Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 82 of 228
Found at i:24338956 original size:24 final size:24
Alignment explanation
Indices: 24338918--24338977 Score: 104
Period size: 24 Copynumber: 2.5 Consensus size: 24
24338908 ATTCTCTCTA
*
24338918 TTCTAA-CAAATTAAAGATAAACC
1 TTCTAACCCAATTAAAGATAAACC
24338941 TTCTAACCCAATTAAAGATAAACC
1 TTCTAACCCAATTAAAGATAAACC
24338965 TTCTAACCCAATT
1 TTCTAACCCAATT
24338978 TTAAATTATT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
23 6 0.17
24 29 0.83
ACGTcount: A:0.45, C:0.23, G:0.03, T:0.28
Consensus pattern (24 bp):
TTCTAACCCAATTAAAGATAAACC
Found at i:24345595 original size:27 final size:25
Alignment explanation
Indices: 24345563--24345621 Score: 75
Period size: 24 Copynumber: 2.3 Consensus size: 25
24345553 GAAAACAAAA
*
24345563 TGGACAAAATAAAAAACCATGAAATTG
1 TGGACAAAAT--AAAACCATGAAACTG
24345590 TGGAC-AAATAAAACCATGAAACTG
1 TGGACAAAATAAAACCATGAAACTG
*
24345614 TGAACAAA
1 TGGACAAA
24345622 CCATGATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 18 0.62
25 2 0.07
26 4 0.14
27 5 0.17
ACGTcount: A:0.54, C:0.14, G:0.15, T:0.17
Consensus pattern (25 bp):
TGGACAAAATAAAACCATGAAACTG
Found at i:24345602 original size:24 final size:24
Alignment explanation
Indices: 24345575--24345621 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
24345565 GACAAAATAA
* *
24345575 AAAACCATGAAATTGTGGACAAAT
1 AAAACCATGAAACTGTGAACAAAT
24345599 AAAACCATGAAACTGTGAACAAA
1 AAAACCATGAAACTGTGAACAAA
24345622 CCATGATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.53, C:0.15, G:0.15, T:0.17
Consensus pattern (24 bp):
AAAACCATGAAACTGTGAACAAAT
Found at i:24347613 original size:13 final size:13
Alignment explanation
Indices: 24347595--24347659 Score: 61
Period size: 13 Copynumber: 5.5 Consensus size: 13
24347585 TAGGTTTTCT
24347595 TAAATATTATCAC
1 TAAATATTATCAC
*
24347608 TAAATA--ATC-T
1 TAAATATTATCAC
*
24347618 TAAATATTATCAT
1 TAAATATTATCAC
*
24347631 TAAATA--AT-TC
1 TAAATATTATCAC
24347641 TAAATATTATCAC
1 TAAATATTATCAC
24347654 TAAATA
1 TAAATA
24347660 ATTTAAAATT
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
10 12 0.29
11 5 0.12
12 5 0.12
13 20 0.48
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.40
Consensus pattern (13 bp):
TAAATATTATCAC
Found at i:24347668 original size:23 final size:22
Alignment explanation
Indices: 24347594--24347666 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 22
24347584 TTAGGTTTTC
24347594 TTAAATATTATCACTAAATAAT
1 TTAAATATTATCACTAAATAAT
*
24347616 CTTAAATATTATCATTAAATAAT
1 -TTAAATATTATCACTAAATAAT
24347639 TCTAAATATTATCACTAAATAAT
1 T-TAAATATTATCACTAAATAAT
24347662 TTAAA
1 TTAAA
24347667 ATTTAAAAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
22 5 0.11
23 42 0.89
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (22 bp):
TTAAATATTATCACTAAATAAT
Found at i:24358930 original size:29 final size:29
Alignment explanation
Indices: 24358885--24358991 Score: 117
Period size: 29 Copynumber: 3.7 Consensus size: 29
24358875 ATCCACCATA
24358885 GGTACATAGTACCTGATAAATATAACATC
1 GGTACATAGTACCTGATAAATATAACATC
* *
24358914 GGCACATAGTGCCTGATAAATATAACA-C
1 GGTACATAGTACCTGATAAATATAACATC
* * * *
24358942 AGTACAAAGTACCTAATAAATATAACCATG
1 GGTACATAGTACCTGATAAATATAA-CATC
* * *
24358972 GGTACTTAGTGCCTCATAAA
1 GGTACATAGTACCTGATAAA
24358992 CCCTAATGAC
Statistics
Matches: 63, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
28 21 0.33
29 27 0.43
30 15 0.24
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.25
Consensus pattern (29 bp):
GGTACATAGTACCTGATAAATATAACATC
Found at i:24360355 original size:12 final size:12
Alignment explanation
Indices: 24360338--24360362 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24360328 GGTGTTCATT
24360338 CGGTTAACCGAC
1 CGGTTAACCGAC
24360350 CGGTTAACCGAC
1 CGGTTAACCGAC
24360362 C
1 C
24360363 CGAAATAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:24360540 original size:9 final size:9
Alignment explanation
Indices: 24360526--24360619 Score: 116
Period size: 9 Copynumber: 10.4 Consensus size: 9
24360516 TTTGGTTAAA
24360526 AATTAACCG
1 AATTAACCG
24360535 AATTAACCG
1 AATTAACCG
*
24360544 AATTACCCG
1 AATTAACCG
*
24360553 AATTAACCA
1 AATTAACCG
*
24360562 AATTACCCG
1 AATTAACCG
*
24360571 AATTACCCG
1 AATTAACCG
24360580 AATTAACCG
1 AATTAACCG
*
24360589 AATTACCCG
1 AATTAACCG
**
24360598 AATTAACAA
1 AATTAACCG
*
24360607 AATTAACCA
1 AATTAACCG
24360616 AATT
1 AATT
24360620 GAATCACTAC
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 74 1.00
ACGTcount: A:0.45, C:0.24, G:0.07, T:0.23
Consensus pattern (9 bp):
AATTAACCG
Found at i:24360565 original size:27 final size:27
Alignment explanation
Indices: 24360526--24360619 Score: 134
Period size: 27 Copynumber: 3.5 Consensus size: 27
24360516 TTTGGTTAAA
* *
24360526 AATTAACCGAATTAACCGAATTACCCG
1 AATTAACCAAATTACCCGAATTACCCG
24360553 AATTAACCAAATTACCCGAATTACCCG
1 AATTAACCAAATTACCCGAATTACCCG
* * **
24360580 AATTAACCGAATTACCCGAATTAACAA
1 AATTAACCAAATTACCCGAATTACCCG
24360607 AATTAACCAAATT
1 AATTAACCAAATT
24360620 GAATCACTAC
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.45, C:0.24, G:0.07, T:0.23
Consensus pattern (27 bp):
AATTAACCAAATTACCCGAATTACCCG
Found at i:24360766 original size:18 final size:18
Alignment explanation
Indices: 24360726--24360769 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
24360716 TAATTTTATG
**
24360726 ATTGGGTTGGGTTGGGTA
1 ATTGGGTTGGGTTGAATA
24360744 ATTGGGTTGGGTTGAATA
1 ATTGGGTTGGGTTGAATA
*
24360762 CTTGGGTT
1 ATTGGGTT
24360770 TAGATTGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (18 bp):
ATTGGGTTGGGTTGAATA
Found at i:24362451 original size:25 final size:25
Alignment explanation
Indices: 24362384--24362450 Score: 98
Period size: 25 Copynumber: 2.6 Consensus size: 25
24362374 TATATATAAT
*
24362384 ATATATTTGATTAAAAATAAAAAAT
1 ATATATTTGATTAAAAATAAAAAAA
*
24362409 TTATATTTGATTAAAAATAAAAAAA
1 ATATATTTGATTAAAAATAAAAAAA
*
24362434 ATATATTTAATATAAAA
1 ATATATTTGAT-TAAAA
24362451 TTCGGGATGG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
25 32 0.86
26 5 0.14
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (25 bp):
ATATATTTGATTAAAAATAAAAAAA
Found at i:24366321 original size:27 final size:27
Alignment explanation
Indices: 24366290--24366344 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
24366280 AAATAGTTTT
*
24366290 CTTGCATATGGAAAACTAAAATTTTGA
1 CTTGCATATGGAAAACCAAAATTTTGA
24366317 CTTGCATATGGAAAACCAAAATTTTGA
1 CTTGCATATGGAAAACCAAAATTTTGA
24366344 C
1 C
24366345 AATCGAGCTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.31
Consensus pattern (27 bp):
CTTGCATATGGAAAACCAAAATTTTGA
Found at i:24374048 original size:18 final size:18
Alignment explanation
Indices: 24374027--24374075 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
24374017 TTATTATAAC
24374027 TATTTATATATATCATCT
1 TATTTATATATATCATCT
*
24374045 TATTATATATTTAT-ATCT
1 TATT-TATATATATCATCT
24374063 TA-TTATATATATC
1 TATTTATATATATC
24374076 TATATATCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 8 0.30
17 1 0.04
18 10 0.37
19 8 0.30
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (18 bp):
TATTTATATATATCATCT
Found at i:24376984 original size:17 final size:18
Alignment explanation
Indices: 24376962--24377000 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
24376952 GATTATTCTT
24376962 TCATTCTTTCATCCA-AA
1 TCATTCTTTCATCCATAA
*
24376979 TCATTCTTTCATTCATAA
1 TCATTCTTTCATCCATAA
24376997 TCAT
1 TCAT
24377001 ACTGTGCAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.28, C:0.26, G:0.00, T:0.46
Consensus pattern (18 bp):
TCATTCTTTCATCCATAA
Found at i:24377737 original size:8 final size:8
Alignment explanation
Indices: 24377726--24377831 Score: 123
Period size: 8 Copynumber: 13.4 Consensus size: 8
24377716 TCAAAAATAA
24377726 AAAAAATC
1 AAAAAATC
24377734 AAAAAATC
1 AAAAAATC
24377742 AAAAAA--
1 AAAAAATC
*
24377748 ATAAAA--
1 AAAAAATC
24377754 AAAAAATC
1 AAAAAATC
24377762 AAAAAAATC
1 -AAAAAATC
24377771 AAAAAATC
1 AAAAAATC
24377779 AAAAAATC
1 AAAAAATC
24377787 AAAAAAATC
1 -AAAAAATC
24377796 AAAAAAATC
1 -AAAAAATC
24377805 AAAAAATC
1 AAAAAATC
*
24377813 -AAAAATAA
1 AAAAAAT-C
24377821 AAAAAATC
1 AAAAAATC
24377829 AAA
1 AAA
24377832 GTCAAAATAG
Statistics
Matches: 88, Mismatches: 4, Indels: 12
0.85 0.04 0.12
Matches are distributed among these distances:
6 10 0.11
7 6 0.07
8 41 0.47
9 31 0.35
ACGTcount: A:0.79, C:0.09, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAAAATC
Found at i:24377740 original size:17 final size:17
Alignment explanation
Indices: 24377718--24377831 Score: 111
Period size: 17 Copynumber: 7.1 Consensus size: 17
24377708 GTTCAGACTC
24377718 AAAAATAAAAAAAATCA
1 AAAAATAAAAAAAATCA
*
24377735 AAAAATCAAAAAAAT--
1 AAAAATAAAAAAAATCA
24377750 ---AA-AAAAAAAATCA
1 AAAAATAAAAAAAATCA
*
24377763 AAAAA-ATCAAAAAATCA
1 AAAAATA-AAAAAAATCA
*
24377780 AAAAATCAAAAAAATCA
1 AAAAATAAAAAAAATCA
*
24377797 AAAAA-ATCAAAAAATC-
1 AAAAATA-AAAAAAATCA
24377813 AAAAATAAAAAAAATCA
1 AAAAATAAAAAAAATCA
24377830 AA
1 AA
24377832 GTCAAAATAG
Statistics
Matches: 79, Mismatches: 8, Indels: 20
0.74 0.07 0.19
Matches are distributed among these distances:
11 8 0.10
12 2 0.03
16 16 0.20
17 53 0.67
ACGTcount: A:0.80, C:0.09, G:0.00, T:0.11
Consensus pattern (17 bp):
AAAAATAAAAAAAATCA
Found at i:24377827 original size:9 final size:8
Alignment explanation
Indices: 24377718--24377825 Score: 92
Period size: 9 Copynumber: 12.6 Consensus size: 8
24377708 GTTCAGACTC
24377718 AAAAATAAA
1 AAAAAT-AA
*
24377727 AAAAATCA
1 AAAAATAA
24377735 AAAAATCAA
1 AAAAAT-AA
24377744 AAAAATAAAAA
1 AAAAAT---AA
24377755 AAAAATCAA
1 AAAAAT-AA
*
24377764 AAAAATCA
1 AAAAATAA
*
24377772 AAAAATCA
1 AAAAATAA
24377780 AAAAATCAA
1 AAAAAT-AA
24377789 AAAAATCAA
1 AAAAAT-AA
*
24377798 AAAAATCA
1 AAAAATAA
*
24377806 AAAAAT-C
1 AAAAATAA
24377813 AAAAATAA
1 AAAAATAA
24377821 AAAAA
1 AAAAA
24377826 ATCAAAGTCA
Statistics
Matches: 85, Mismatches: 9, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
7 6 0.07
8 34 0.40
9 37 0.44
11 8 0.09
ACGTcount: A:0.81, C:0.08, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAAATAA
Found at i:24377859 original size:21 final size:20
Alignment explanation
Indices: 24377835--24377886 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 20
24377825 AATCAAAGTC
24377835 AAAATAGGA-AAAAAGAAAAAG
1 AAAA-AGGAGAAAAAG-AAAAG
*
24377856 AAAAAAGAAGAAAAAGAAAAG
1 -AAAAAGGAGAAAAAGAAAAG
24377877 AAAAAGGAGA
1 AAAAAGGAGA
24377887 GGTCAAGGCG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 9 0.33
21 8 0.30
22 10 0.37
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (20 bp):
AAAAAGGAGAAAAAGAAAAG
Found at i:24377866 original size:16 final size:15
Alignment explanation
Indices: 24377843--24377880 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 15
24377833 TCAAAATAGG
24377843 AAAAAAGAAAAAGAA
1 AAAAAAGAAAAAGAA
24377858 AAAAGAAGAAAAAGAA
1 AAAA-AAGAAAAAGAA
24377874 AAGAAAA
1 AA-AAAA
24377881 AGGAGAGGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.19
16 15 0.71
17 2 0.10
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (15 bp):
AAAAAAGAAAAAGAA
Found at i:24377870 original size:11 final size:11
Alignment explanation
Indices: 24377844--24377882 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
24377834 CAAAATAGGA
24377844 AAAAAGAAAAAG
1 AAAAAG-AAAAG
*
24377856 AAAAA-AGAAG
1 AAAAAGAAAAG
24377866 AAAAAGAAAAG
1 AAAAAGAAAAG
24377877 AAAAAG
1 AAAAAG
24377883 GAGAGGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 9 0.38
11 10 0.42
12 5 0.21
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:24378703 original size:9 final size:9
Alignment explanation
Indices: 24378691--24378723 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
24378681 AAAAAAAATG
24378691 ATGAAAAAA
1 ATGAAAAAA
24378700 ATG--AAAA
1 ATGAAAAAA
24378707 ATGAAAAAA
1 ATGAAAAAA
24378716 ATGAAAAA
1 ATGAAAAA
24378724 GTAAAAATGG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 7 0.32
9 15 0.68
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (9 bp):
ATGAAAAAA
Found at i:24378730 original size:16 final size:16
Alignment explanation
Indices: 24378691--24378723 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
24378681 AAAAAAAATG
24378691 ATGAAAAAAATGAAAA
1 ATGAAAAAAATGAAAA
24378707 ATGAAAAAAATGAAAA
1 ATGAAAAAAATGAAAA
24378723 A
1 A
24378724 GTAAAAATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (16 bp):
ATGAAAAAAATGAAAA
Found at i:24380082 original size:88 final size:88
Alignment explanation
Indices: 24379933--24381744 Score: 1969
Period size: 88 Copynumber: 20.9 Consensus size: 88
24379923 AACAGATCAG
* * * *
24379933 TGAAGACAACAGATCTTGCATTCCTTCATTGACAGCGAAGTAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
24379998 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * *
24380021 TGAAGACAAAAGATCTTGCCTTCCTACATTGACAGCGAAGTAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
24380086 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * *
24380109 TGAAGATAAAAGATCTTCCCTTCCTGCATTGACAGCGAAGCAGGTTGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
*
24380174 CTCTCGATTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * *
24380197 TGAAGACAAAATATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
*
24380262 CTCTCGATTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
24380285 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTACCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
24380350 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
*
24380373 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
*
24380438 CTCTCGGTTGTGATGGAGCTGGA
66 CTCTCGGTTGTGATGGAGCTGGT
* *
24380461 TGAAGACAAAAGATTTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
24380526 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
24380549 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAACGAAGCAGGTCGAAG-CACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
24380613 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
24380636 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTTGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
24380701 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * *
24380724 TGAAAACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCTGATCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
24380789 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
*
24380812 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
*
24380877 CTCTCGGTTATGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
24380900 T-AA-A-GAAAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAA-A-ACAAAGCCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA-CCTTGCC
* *
24380960 T-TCATTGGTTG-CAGTGGAGCTGGT
65 TCTC-TCGGTTGTGA-TGGAGCTGGT
* ** * * * * *
24380984 TAAAGA-AGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGAT--AAAAAACAAAGCCATGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA-CCTTGCC
* * *
24381046 T-TCATTGGTTG-CAGTGGAGCTAGT
65 TCTC-TCGGTTGTGA-TGGAGCTGGT
* ** * *
24381070 TAAAGA-AGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAA-A-ACAAAGCCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA-CCTTGCC
* **
24381132 T-TCATTGGTT-ACAGTGGAGCTGGT
65 TCTC-TCGGTTGTGA-TGGAGCTGGT
* ** * * *
24381156 TAAAGA-AGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCG-A-A-A-AAGCCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
* **
24381216 -TCATTGGTT-ACAGTGGAGCTGGT
66 CTC-TCGGTTGTGA-TGGAGCTGGT
* ** * * * *
24381239 TAAAGA-ATCAGATCTTGCCTTCCTGCATTAACAACGAAGTAGATTGAA-A-ACAAAGCCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA-CCTTGCC
* *
24381301 T-TCATTGGTTG-CAGTGGAGCTGGT
65 TCTC-TCGGTTGTGA-TGGAGCTGGT
** * ** * * * *
24381325 CAAAGATAGCATATCTGGCCTTCCTGCGTTAACAGCGAAGCAGATCGAA-A-ACAAAGCCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA-CCTTGCC
* *
24381388 T-TCATTGGTTG-CAGTGGAGCTGGT
65 TCTC-TCGGTTGTGA-TGGAGCTGGT
* ** * * *
24381412 TAAAGA-ATCAGATCTTGCATTACTGCATTAACAGCGAAGCAGATCGAA-A-ACAAAGCCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA-CCTTGCC
* * *
24381474 T-TCATTGGTTG-CAGTGGAACTGGT
65 TCTC-TCGGTTGTGA-TGGAGCTGGT
* ** * *
24381498 TAAAGA-AGCAGATCTTGCCTTCCTGCATTAACAACGAAGCAGATCGAA-A-ACAAAGCCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA-CCTTGCC
* *
24381560 T-TCATTGGTTG-CAGTGGAGCTGGT
65 TCTC-TCGGTTGTGA-TGGAGCTGGT
** * ** * * *
24381584 CAAAGATAGCATATCTTGCCTTCCTGCATTAACAACGAAGCAGATCGAA-A-ACAAAGCCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA-CCTTGCC
* ** *
24381647 T-TCATTGGTTGCAATGGAGCTAGT
65 TCTC-TCGGTTGTGATGGAGCTGGT
* ** * * * *
24381671 TGAAGATAGCAGATATTGCCTTCCTGCGTTAACAACGAAGCAGATCGAA-A-ACAAAGCCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA-CCTTGCC
24381734 TC-CATCGGTTG
65 TCTC-TCGGTTG
24381745 CAGTGGAGTA
Statistics
Matches: 1616, Mismatches: 89, Indels: 39
0.93 0.05 0.02
Matches are distributed among these distances:
83 80 0.05
84 32 0.02
85 47 0.03
86 389 0.24
87 308 0.19
88 760 0.47
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.25
Consensus pattern (88 bp):
TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
CTCTCGGTTGTGATGGAGCTGGT
Found at i:24381558 original size:43 final size:43
Alignment explanation
Indices: 24381511--24381734 Score: 138
Period size: 43 Copynumber: 5.2 Consensus size: 43
24381501 AGAAGCAGAT
*
24381511 CTTGCCTTCCTGCATTAACAACGAAGCAGATCGAAAACAAAGC
1 CTTGCCTTCCTGCGTTAACAACGAAGCAGATCGAAAACAAAGC
* * ** * * * * * *
24381554 CTTGCCTTCATTG-GTT-GCAGTGGAGCTGGTCAAAGATAGCATA-T
1 CTTGCCTTC-CTGCGTTAACAACGAAGCAGATCGAA-A-A-CAAAGC
*
24381598 CTTGCCTTCCTGCATTAACAACGAAGCAGATCGAAAACAAAGC
1 CTTGCCTTCCTGCGTTAACAACGAAGCAGATCGAAAACAAAGC
* * * * * * *
24381641 CTTGCCTTCATTG-GTT-GCAATGGAGCTAG-TTGAAGATAGCAGA-T
1 CTTGCCTTC-CTGCGTTAACAACGAAGC-AGATCGAA-A-A-CAAAGC
*
24381685 ATTGCCTTCCTGCGTTAACAACGAAGCAGATCGAAAACAAAGC
1 CTTGCCTTCCTGCGTTAACAACGAAGCAGATCGAAAACAAAGC
24381728 CTTGCCT
1 CTTGCCT
24381735 CCATCGGTTG
Statistics
Matches: 126, Mismatches: 39, Indels: 32
0.64 0.20 0.16
Matches are distributed among these distances:
42 28 0.22
43 38 0.30
44 32 0.25
45 28 0.22
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.25
Consensus pattern (43 bp):
CTTGCCTTCCTGCGTTAACAACGAAGCAGATCGAAAACAAAGC
Found at i:24381876 original size:44 final size:44
Alignment explanation
Indices: 24381768--24382464 Score: 274
Period size: 44 Copynumber: 15.8 Consensus size: 44
24381758 TGAAGCCAGA
* * * *
24381768 GATCTTATCTCCTTG-AGATTACAGCGGAGCAGATT-AAAGACAC
1 GATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTAAAATACAG
* * * ** *
24381811 TATCCTATCTCCCTAAAGTTACAGTGGAGTGGATTAAAATAAAG
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATACAG
* * * ***
24381855 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGA-TCGTAT-CAG
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATACAG
* * * ** *
24381897 G-TCTTATCTCCTTGAGGTTACAGTGGAGTAGACCAAAGAATTTCA-
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGA-TTAA-AA-TACAG
* * **
24381942 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATT-GAAGCCAG
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATACAG
* * * *
24381985 AGATCTTATCTCCCTG-AGATTACAGCGGAGCAGA-TCAAAGACAC
1 -GATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTAAAATACAG
* * * * * * *
24382029 TATCCTATCTCCCTGAAGTTACAGTGGAACGGATTGAAATAAAA
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATACAG
* * *
24382073 GATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGATTAAAA-CCAAG
1 GATCTTATCTCCCTGAAGTT--A-C--AGT-G---G-AGCAGATTAAAATAC-AG
* * *** *
24382127 GATCTTATCTCTCTGAAGTTACAGTAGAGCAGA-TCGCA-CCAG
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATACAG
* * * **
24382169 G-TCTTATTTCCCTG-AGATTACAGTGGAACAGACTGAAGAATTTTA-
1 GATCTTATCTCCCTGAAG-TTACAGTGGAGCAGA-TTAA-AA-TACAG
* * * *
24382214 GATCTTATCTCCCTGAGGTTACAGCGGAGCAGATT-GAA-GCTAG
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAC-AG
* * * * *
24382257 TAATCCTATCTCCCTG-AGATTATAGTGGAGCGGATTAAAATAAAG
1 -GATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTAAAATACAG
* * * ****
24382302 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGA-TCGTGT-CA-
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATACAG
* * *
24382343 GATCTTATCTCCCTG-AGATTACAGCGGAGCAGATT-GAA-GCTAG
1 GATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTAAAATAC-AG
* * * *
24382386 TAATCCTATCTCCCTG-AGATTACAGTGGAGCGGATTAAAATAAAG
1 -GATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTAAAATACAG
* * *
24382431 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGAT
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGAT
24382465 CGCATCAGGT
Statistics
Matches: 484, Mismatches: 121, Indels: 97
0.69 0.17 0.14
Matches are distributed among these distances:
40 4 0.01
41 79 0.16
42 12 0.02
43 66 0.14
44 206 0.43
45 17 0.04
46 58 0.12
47 2 0.00
49 6 0.01
50 1 0.00
51 1 0.00
52 1 0.00
53 1 0.00
54 30 0.06
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (44 bp):
GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATACAG
Found at i:24381946 original size:87 final size:88
Alignment explanation
Indices: 24381853--24382375 Score: 321
Period size: 87 Copynumber: 5.9 Consensus size: 88
24381843 ATTAAAATAA
* * * * * *
24381853 AGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAGGTCTTATCTCCTTGAGGTTAC
1 AGGATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCGTACCAGATCTTATCTCCCTGAGATTAC
* *
24381918 AGTGGAGTAGACCAAAGAATTTC
66 AGCGGAGCAGACCAAAGAATTTC
* * * *
24381941 A-GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGAT
1 AGGATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCGTA-CC--AGATCTTATCTCCCTGAGAT
*
24382005 TACAGCGGAGCAGATCAAAG-A---C
63 TACAGCGGAGCAGACCAAAGAATTTC
** * * * * * ** *
24382027 ACTATCCTATCTCCCTGAAGTTACAGTGGAACGGATTGAAATAAAAGATCTTATCTCTCTGA-AG
1 AGGATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCG---TACCAGATCTTATCTCCCTGAGA-
* * * *
24382091 TTACAGCAGAGTAGATCGCATCAG-ATTAAAACC
62 TTACAGCGGAGCAGA-C-CA-AAGAATT----TC
* * * *
24382124 AAGGATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCGCACCAGGTCTTATTTCCCTGAGATTA
1 -AGGATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCGTACCAGATCTTATCTCCCTGAGATTA
* * ** *
24382189 CAGTGGAACAGACTGAAGAATTTT
65 CAGCGGAGCAGACCAAAGAATTTC
* ** * * * *
24382213 A-GATCTTATCTCCCTGAGGTTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGAT
1 AGGATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCGTA-CCAG--ATCTTATCTCCCTGAGAT
* * * ** **
24382277 TATAGTGGAGCGGA-TTAA-AA-TAA
63 TACAGCGGAGCAGACCAAAGAATTTC
* * **
24382300 AGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTCAGATCTTATCTCCCTGAGATTAC
1 AGGATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCGTACCAGATCTTATCTCCCTGAGATTAC
24382365 AGCGGAGCAGA
66 AGCGGAGCAGA
24382376 TTGAAGCTAG
Statistics
Matches: 331, Mismatches: 79, Indels: 53
0.71 0.17 0.11
Matches are distributed among these distances:
85 28 0.08
86 3 0.01
87 128 0.39
88 38 0.11
89 6 0.02
90 64 0.19
92 2 0.01
93 3 0.01
94 1 0.00
95 26 0.08
96 1 0.00
97 1 0.00
98 30 0.09
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28
Consensus pattern (88 bp):
AGGATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCGTACCAGATCTTATCTCCCTGAGATTAC
AGCGGAGCAGACCAAAGAATTTC
Found at i:24382370 original size:129 final size:129
Alignment explanation
Indices: 24382213--24382528 Score: 506
Period size: 129 Copynumber: 2.4 Consensus size: 129
24382203 GAAGAATTTT
24382213 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
1 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
* **
24382278 ATAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTC
66 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
*
24382342 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
1 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
24382407 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
66 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
* * * * * * * * * *
24382471 AGGTTTTACCTCCCTGTGGTTACAGTGGAGTACATAGAAGCCAGTAATTCTATCTCCC
1 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCC
24382529 AGACATTGCG
Statistics
Matches: 172, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
129 172 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (129 bp):
AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
Found at i:24382659 original size:44 final size:44
Alignment explanation
Indices: 24382567--24382665 Score: 114
Period size: 44 Copynumber: 2.3 Consensus size: 44
24382557 ATGCCTATCT
* * * *
24382567 CCCCT-AAGTTGCAGTGGAGCGGATTAGAACCACAGATCCAATC
1 CCCCTGAAGTTGCAGCGGAGCAGATTAAAACAACAGATCCAATC
*
24382610 TCCCTGAAGTTGCAGCGGAGCAGATTAAAACAAC-GAATCTC-ATC
1 CCCCTGAAGTTGCAGCGGAGCAGATTAAAACAACAG-ATC-CAATC
24382654 CCCCTGAAGTTG
1 CCCCTGAAGTTG
24382666 GTACGAAGAA
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
43 5 0.11
44 41 0.87
45 1 0.02
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.20
Consensus pattern (44 bp):
CCCCTGAAGTTGCAGCGGAGCAGATTAAAACAACAGATCCAATC
Found at i:24384183 original size:18 final size:18
Alignment explanation
Indices: 24384162--24384210 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
24384152 TTATTATAAC
24384162 TATTTATATATATCATCT
1 TATTTATATATATCATCT
*
24384180 TATTATATATTTAT-ATCT
1 TATT-TATATATATCATCT
24384198 TA-TTATATATATC
1 TATTTATATATATC
24384211 TATATATCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 8 0.30
17 1 0.04
18 10 0.37
19 8 0.30
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (18 bp):
TATTTATATATATCATCT
Found at i:24389146 original size:19 final size:19
Alignment explanation
Indices: 24389075--24389147 Score: 60
Period size: 19 Copynumber: 3.7 Consensus size: 19
24389065 ATATATATAA
*
24389075 ATTTTTAAGAATTTACTAAT
1 ATTTTAAAG-ATTTACTAAT
* *
24389095 GTTTTTAATGATTTA-TCAAT
1 -ATTTTAAAGATTTACT-AAT
*
24389115 ATATCTAAA-ATTTACTAAT
1 AT-TTTAAAGATTTACTAAT
24389134 ATTTTAAAGATTTA
1 ATTTTAAAGATTTA
24389148 TCAGTATTTC
Statistics
Matches: 41, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
18 5 0.12
19 17 0.41
20 13 0.32
21 6 0.15
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.49
Consensus pattern (19 bp):
ATTTTAAAGATTTACTAAT
Found at i:24389146 original size:38 final size:39
Alignment explanation
Indices: 24389084--24389160 Score: 111
Period size: 38 Copynumber: 2.0 Consensus size: 39
24389074 AATTTTTAAG
* *
24389084 AATTTACTAATGTTTTTAATGATTTATCAATATATCTAA
1 AATTTACTAATGATTTTAAAGATTTATCAATATATCTAA
* *
24389123 AATTTACTAAT-ATTTTAAAGATTTATCAGTATTTCTAA
1 AATTTACTAATGATTTTAAAGATTTATCAATATATCTAA
24389161 GCTTTTATCA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
38 23 0.68
39 11 0.32
ACGTcount: A:0.39, C:0.08, G:0.05, T:0.48
Consensus pattern (39 bp):
AATTTACTAATGATTTTAAAGATTTATCAATATATCTAA
Found at i:24389213 original size:20 final size:20
Alignment explanation
Indices: 24389098--24389231 Score: 88
Period size: 20 Copynumber: 7.0 Consensus size: 20
24389088 TACTAATGTT
*
24389098 TTTAATGATTTATCAATATA
1 TTTAAAGATTTATCAATATA
*
24389118 TCTAAA-ATTTA-CTAATAT-
1 TTTAAAGATTTATC-AATATA
*
24389136 TTTAAAGATTTATCAGTAT-
1 TTTAAAGATTTATCAATATA
*
24389155 TTCT-AAGCTTTTATCAA-A-A
1 TT-TAAAG-ATTTATCAATATA
** *
24389174 -TTAATCATTTA-CAAAAATA
1 TTTAAAGATTTATC-AATATA
24389193 TTTAAAGATTTATCAATATA
1 TTTAAAGATTTATCAATATA
* *
24389213 TATAAATATTTATCAATAT
1 TTTAAAGATTTATCAATAT
24389232 TTCTAAGACT
Statistics
Matches: 88, Mismatches: 14, Indels: 24
0.70 0.11 0.19
Matches are distributed among these distances:
16 1 0.01
17 7 0.08
18 9 0.10
19 26 0.30
20 44 0.50
21 1 0.01
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.45
Consensus pattern (20 bp):
TTTAAAGATTTATCAATATA
Found at i:24389230 original size:10 final size:10
Alignment explanation
Indices: 24389200--24389233 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
24389190 ATATTTAAAG
24389200 ATTTATCAAT
1 ATTTATCAAT
* *
24389210 ATATATAAAT
1 ATTTATCAAT
24389220 ATTTATCAAT
1 ATTTATCAAT
24389230 ATTT
1 ATTT
24389234 CTAAGACTTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (10 bp):
ATTTATCAAT
Found at i:24405358 original size:23 final size:24
Alignment explanation
Indices: 24405329--24405374 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
24405319 AAAAAAGGTT
24405329 AAAATTTCA-AAAAAATAAAAATA
1 AAAATTTCACAAAAAATAAAAATA
*
24405352 AAAATTTCACAAAATATAAAAAT
1 AAAATTTCACAAAAAATAAAAAT
24405375 TCACAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.24
Consensus pattern (24 bp):
AAAATTTCACAAAAAATAAAAATA
Found at i:24405372 original size:18 final size:17
Alignment explanation
Indices: 24405345--24405385 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
24405335 TCAAAAAAAT
24405345 AAAA-ATAAAAATTTCAC
1 AAAATATAAAAA-TTCAC
24405362 AAAATATAAAAATTCAC
1 AAAATATAAAAATTCAC
24405379 AAAATAT
1 AAAATAT
24405386 TTAGAAAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.70
18 7 0.30
ACGTcount: A:0.66, C:0.10, G:0.00, T:0.24
Consensus pattern (17 bp):
AAAATATAAAAATTCAC
Found at i:24405766 original size:26 final size:27
Alignment explanation
Indices: 24405732--24405789 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 27
24405722 AAACTAAGTT
* *
24405732 TTTTTTAATTTTTAAAAT-TTTTTCAA
1 TTTTTTAATTTATAAAATCTTTTTAAA
*
24405758 TTTTTTAATTTATATAATCTTTTTAAA
1 TTTTTTAATTTATAAAATCTTTTTAAA
24405785 TTTTT
1 TTTTT
24405790 AAGGTTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 16 0.57
27 12 0.43
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.67
Consensus pattern (27 bp):
TTTTTTAATTTATAAAATCTTTTTAAA
Found at i:24408401 original size:9 final size:9
Alignment explanation
Indices: 24408387--24408415 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
24408377 TTTCAAATCA
24408387 CAACCAATT
1 CAACCAATT
24408396 CAACCAATT
1 CAACCAATT
24408405 CAACCAATT
1 CAACCAATT
24408414 CA
1 CA
24408416 TTTCACATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (9 bp):
CAACCAATT
Found at i:24409075 original size:45 final size:44
Alignment explanation
Indices: 24409016--24409175 Score: 194
Period size: 45 Copynumber: 3.4 Consensus size: 44
24409006 ACACCAGTAT
*
24409016 ACAGTAATCAGTAACAGTAACAGTATTCAACACACAAAGTGCTGA
1 ACAGTAA-CAGTAACAGTAACAGTATTCGACACACAAAGTGCTGA
* *
24409061 ACCTGTAACAGTAACAGTAACAGTATTCGACACATAAAGTGCCGAGTCGGTA
1 A-CAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTG-C---T--G-A
*
24409113 ACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGA
1 ACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTGA
24409157 ATCAGTAACAGTAACAGTA
1 A-CAGTAACAGTAACAGTA
24409176 GTCGGCACAT
Statistics
Matches: 100, Mismatches: 6, Indels: 18
0.81 0.05 0.15
Matches are distributed among these distances:
44 2 0.02
45 50 0.50
46 6 0.06
49 1 0.01
50 1 0.01
51 38 0.38
52 2 0.02
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (44 bp):
ACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTGA
Found at i:24409120 original size:51 final size:49
Alignment explanation
Indices: 24409016--24409175 Score: 204
Period size: 51 Copynumber: 3.2 Consensus size: 49
24409006 ACACCAGTAT
*
24409016 ACAGTAATCAGTAACAGTAACAGTATTCAACACACAAAGTG-C--T-G-A
1 ACAGTAA-CAGTAACAGTAACAGTATTCGACACACAAAGTGCCGATCGTA
* *
24409061 ACCTGTAACAGTAACAGTAACAGTATTCGACACATAAAGTGCCGAGTCGGTA
1 A-CAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGA-TC-GTA
24409113 ACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCAGTA
1 ACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCG-ATC-GTA
24409164 ACAGTAACAGTA
1 ACAGTAACAGTA
24409176 GTCGGCACAT
Statistics
Matches: 100, Mismatches: 6, Indels: 12
0.85 0.05 0.10
Matches are distributed among these distances:
45 32 0.32
46 6 0.06
49 1 0.01
51 58 0.58
52 3 0.03
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (49 bp):
ACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGATCGTA
Found at i:24409121 original size:6 final size:6
Alignment explanation
Indices: 24409110--24409136 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
24409100 TGCCGAGTCG
24409110 GTAACA GTAACA GTAACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTA
24409137 TTCGACACAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:24409463 original size:39 final size:40
Alignment explanation
Indices: 24409379--24409464 Score: 104
Period size: 40 Copynumber: 2.2 Consensus size: 40
24409369 TTCTTTACTT
* * * *
24409379 CAGTAATTTCACAATTCAATGCATTATGCATAACAATATT
1 CAGTATTTTCACAATTCAATGCATAATGCAAAACAATATC
*
24409419 CAGTATTTTCACAATTCACT-CAGTAAT-CAAAACAATATC
1 CAGTATTTTCACAATTCAATGCA-TAATGCAAAACAATATC
24409458 CAGTATT
1 CAGTATT
24409465 CCATAATTCG
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
39 19 0.47
40 21 0.52
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.34
Consensus pattern (40 bp):
CAGTATTTTCACAATTCAATGCATAATGCAAAACAATATC
Found at i:24412623 original size:9 final size:9
Alignment explanation
Indices: 24412609--24412634 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
24412599 TTTCAAGCCA
24412609 AAGCCAGAT
1 AAGCCAGAT
24412618 AAGCCAGAT
1 AAGCCAGAT
24412627 AAGCCAGA
1 AAGCCAGA
24412635 AGAGCTAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.23, G:0.23, T:0.08
Consensus pattern (9 bp):
AAGCCAGAT
Found at i:24414949 original size:20 final size:20
Alignment explanation
Indices: 24414924--24414966 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
24414914 AAATGCTAGT
24414924 GAACCAACACTGTATGTCAA
1 GAACCAACACTGTATGTCAA
24414944 GAACCAACACTGTATGTCAA
1 GAACCAACACTGTATGTCAA
24414964 GAA
1 GAA
24414967 GAATCAAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.42, C:0.23, G:0.16, T:0.19
Consensus pattern (20 bp):
GAACCAACACTGTATGTCAA
Found at i:24436598 original size:24 final size:24
Alignment explanation
Indices: 24436565--24436615 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
24436555 TCCTTTCTGT
*
24436565 TTTTGCTTTGGTTCTTCTGTC-TTG
1 TTTTGCTTTGGTTCCTC-GTCTTTG
* *
24436589 TTTTGTTTTGTTTCCTCGTCTTTG
1 TTTTGCTTTGGTTCCTCGTCTTTG
24436613 TTT
1 TTT
24436616 GCTGCCAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 3 0.13
24 20 0.87
ACGTcount: A:0.00, C:0.16, G:0.18, T:0.67
Consensus pattern (24 bp):
TTTTGCTTTGGTTCCTCGTCTTTG
Found at i:24438106 original size:16 final size:15
Alignment explanation
Indices: 24438087--24438120 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
24438077 TATAAATATT
24438087 ATATTTAATTTTTTAA
1 ATATTTAA-TTTTTAA
*
24438103 ATATTTTATTTTTAA
1 ATATTTAATTTTTAA
24438118 ATA
1 ATA
24438121 CATTAATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
ATATTTAATTTTTAA
Found at i:24438117 original size:23 final size:22
Alignment explanation
Indices: 24438060--24438113 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
24438050 TTACATGTTT
* *
24438060 AATATT-TAATTAGTTTTTATA
1 AATATTATATTTAATTTTTATA
24438081 AATATTATATTTAATTTTT-TA
1 AATATTATATTTAATTTTTATA
*
24438102 AATATTTTATTT
1 AATATTATATTT
24438114 TTAAATACAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 19 0.66
22 10 0.34
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
AATATTATATTTAATTTTTATA
Found at i:24439001 original size:19 final size:20
Alignment explanation
Indices: 24438951--24439002 Score: 54
Period size: 19 Copynumber: 2.6 Consensus size: 20
24438941 TGATGTTTGT
24438951 GATATTTTTAATTATTTAATTA
1 GATA-TTTT-ATTATTTAATTA
**
24438973 GATA-AATATTATTTAATTA
1 GATATTTTATTATTTAATTA
24438992 -ATATTTTATTA
1 GATATTTTATTA
24439003 AGATTTTTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
18 3 0.12
19 17 0.68
20 1 0.04
22 4 0.16
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (20 bp):
GATATTTTATTATTTAATTA
Found at i:24456402 original size:21 final size:22
Alignment explanation
Indices: 24456350--24456403 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
24456340 TTACATGTTT
* *
24456350 AATA-TTTAATTAGTTTTTTTA
1 AATATTTTATTTAGTTTTTATA
*
24456371 AATATTATATTTAG-TTTTATA
1 AATATTTTATTTAGTTTTTATA
24456392 AATATTTTATTT
1 AATATTTTATTT
24456404 TTAAATACAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 21 0.75
22 7 0.25
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (22 bp):
AATATTTTATTTAGTTTTTATA
Found at i:24465151 original size:25 final size:25
Alignment explanation
Indices: 24465101--24465151 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
24465091 TATAAATACT
* *
24465101 AAATCCCTAAATAAAAGATTTCAAA
1 AAATCCCTAAATAAAAAATATCAAA
24465126 AAATCCCTAAATAAAATAATAT-AAA
1 AAATCCCTAAATAAAA-AATATCAAA
24465151 A
1 A
24465152 TATCTTAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 20 0.87
26 3 0.13
ACGTcount: A:0.61, C:0.14, G:0.02, T:0.24
Consensus pattern (25 bp):
AAATCCCTAAATAAAAAATATCAAA
Found at i:24465844 original size:16 final size:15
Alignment explanation
Indices: 24465814--24465845 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
24465804 AAACGAAAAC
24465814 AAAAAGGAAAGAAAG
1 AAAAAGGAAAGAAAG
24465829 AAAAAGAGAAAGAAAG
1 AAAAAG-GAAAGAAAG
24465845 A
1 A
24465846 CGCAAAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (15 bp):
AAAAAGGAAAGAAAG
Found at i:24466636 original size:7 final size:7
Alignment explanation
Indices: 24466624--24466663 Score: 80
Period size: 7 Copynumber: 5.7 Consensus size: 7
24466614 TATCGAGTTG
24466624 ATTGAAT
1 ATTGAAT
24466631 ATTGAAT
1 ATTGAAT
24466638 ATTGAAT
1 ATTGAAT
24466645 ATTGAAT
1 ATTGAAT
24466652 ATTGAAT
1 ATTGAAT
24466659 ATTGA
1 ATTGA
24466664 GTCGGATATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.42
Consensus pattern (7 bp):
ATTGAAT
Found at i:24467249 original size:17 final size:17
Alignment explanation
Indices: 24467199--24467237 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
24467189 GTGGATTTTA
* *
24467199 AATATTCAATTGTGTTT
1 AATATTTAATTGTGTCT
24467216 AATATTTAATTGTGTCT
1 AATATTTAATTGTGTCT
24467233 AATAT
1 AATAT
24467238 ATTATTTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.51
Consensus pattern (17 bp):
AATATTTAATTGTGTCT
Found at i:24467655 original size:13 final size:13
Alignment explanation
Indices: 24467637--24467662 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24467627 TGAATGATGT
24467637 TTTGATAATATAA
1 TTTGATAATATAA
24467650 TTTGATAATATAA
1 TTTGATAATATAA
24467663 AGTACCAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (13 bp):
TTTGATAATATAA
Found at i:24472842 original size:17 final size:18
Alignment explanation
Indices: 24472820--24472853 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
24472810 ACAGTTGTAA
24472820 TTTAAAT-TCTAATTATT
1 TTTAAATGTCTAATTATT
*
24472837 TTTAAATGTGTAATTAT
1 TTTAAATGTCTAATTAT
24472854 CACAACTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.56
Consensus pattern (18 bp):
TTTAAATGTCTAATTATT
Found at i:24472894 original size:18 final size:17
Alignment explanation
Indices: 24472865--24472898 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
24472855 ACAACTTCTA
24472865 TTAAATTATAATTATTT
1 TTAAATTATAATTATTT
24472882 TTAAATCTATAATTATT
1 TTAAAT-TATAATTATT
24472899 GTAACTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (17 bp):
TTAAATTATAATTATTT
Found at i:24475442 original size:32 final size:32
Alignment explanation
Indices: 24475382--24475442 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
24475372 TAAATTTATA
* *
24475382 ATTTTGAAAAATAATTAAGAGAATAAAATAAT
1 ATTTTAAAAAATAATAAAGAGAATAAAATAAT
*
24475414 ATTTTAAAAAATAATGAAAGTGAA-AAAAT
1 ATTTTAAAAAATAAT-AAAGAGAATAAAAT
24475443 GGTAAATCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
32 19 0.76
33 6 0.24
ACGTcount: A:0.61, C:0.00, G:0.10, T:0.30
Consensus pattern (32 bp):
ATTTTAAAAAATAATAAAGAGAATAAAATAAT
Found at i:24476626 original size:29 final size:30
Alignment explanation
Indices: 24476572--24476635 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 30
24476562 CATAAACTAT
* *
24476572 AATTTAATACATGAACTTTAATTTTA-TGC
1 AATTTAATACATGAACTCTAAATTTAGTGC
* *
24476601 AATTTGATACATGAA-TACTAAATTTAGTTC
1 AATTTAATACATGAACT-CTAAATTTAGTGC
24476631 AATTT
1 AATTT
24476636 TCATAAATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 1 0.03
29 21 0.72
30 7 0.24
ACGTcount: A:0.39, C:0.09, G:0.08, T:0.44
Consensus pattern (30 bp):
AATTTAATACATGAACTCTAAATTTAGTGC
Found at i:24483150 original size:41 final size:41
Alignment explanation
Indices: 24483093--24483454 Score: 444
Period size: 41 Copynumber: 8.8 Consensus size: 41
24483083 TTTTTTAAAC
*
24483093 CTTTAGCGGCGTTTTTGTGTAAGCGCCGCTAATGCTCGGAT
1 CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGGAT
*
24483134 CTTTAGCGGCGTTTTTGTCTAGGCGCCGCTAATGCTC-GAGT
1 CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGGA-T
* * * *
24483175 CTTTAGCGGCGTTTTCGTGTAGGCGCCACTAATGCTCGGAT
1 CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGGAT
* *
24483216 CTTTAGCGGCGTTTTTGTCTAGGTGCCGCTAATGCTC-GAGT
1 CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGGA-T
* * *
24483257 CTTTAGCGGCGTTTTCGTGTAGGCGCCGCTAATGCTCGGAT
1 CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGGAT
* *
24483298 CTTTAGCGGCGTTTTTGTCTATGCGCCTCTAATGCTCGGAT
1 CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGGAT
* *
24483339 CTTTAGCGGCGTTTTTATAC-AAGCGCCGCTAATACTCGGAT
1 CTTTAGCGGCGTTTTTGT-CTAAGCGCCGCTAATGCTCGGAT
* ** * * * *
24483380 CTTTAACGGCGTTTTTAACTGAGCGCCACTAATTCTCTTG-T
1 CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTC-GGAT
* *
24483421 CTTCAGCGGCGTTTGTGTCTAAGCGCCGCTAATG
1 CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATG
24483455 TATTGACCTT
Statistics
Matches: 280, Mismatches: 34, Indels: 14
0.85 0.10 0.04
Matches are distributed among these distances:
40 5 0.02
41 269 0.96
42 6 0.02
ACGTcount: A:0.15, C:0.24, G:0.27, T:0.34
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGGAT
Found at i:24485376 original size:9 final size:8
Alignment explanation
Indices: 24485315--24485413 Score: 52
Period size: 7 Copynumber: 13.0 Consensus size: 8
24485305 AAAATTTGAT
24485315 GTTTAGGG
1 GTTTAGGG
24485323 G-TTAGGGG
1 GTTTA-GGG
24485331 GATTTA-GG
1 G-TTTAGGG
*
24485339 GTTTAAGG
1 GTTTAGGG
*
24485347 G-TTA-TG
1 GTTTAGGG
*
24485353 CTTTAGGG
1 GTTTAGGG
24485361 G-TTAGGG
1 GTTTAGGG
24485368 GATTTAGGG
1 G-TTTAGGG
*
24485377 G-TAAGGG
1 GTTTAGGG
24485384 G-TTAGGG
1 GTTTAGGG
* *
24485391 GGTTATGG
1 GTTTAGGG
*
24485399 ATTT-GGG
1 GTTTAGGG
24485406 GTTTAGGG
1 GTTTAGGG
24485414 TTTCAACGGT
Statistics
Matches: 70, Mismatches: 11, Indels: 20
0.69 0.11 0.20
Matches are distributed among these distances:
6 1 0.01
7 37 0.53
8 22 0.31
9 7 0.10
10 3 0.04
ACGTcount: A:0.17, C:0.01, G:0.47, T:0.34
Consensus pattern (8 bp):
GTTTAGGG
Found at i:24488324 original size:23 final size:23
Alignment explanation
Indices: 24488293--24488339 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
24488283 TATTATACAT
24488293 AACTGACAACTTACATAACTTAC
1 AACTGACAACTTACATAACTTAC
*
24488316 AACTTACAACTTACATAACTTAC
1 AACTGACAACTTACATAACTTAC
24488339 A
1 A
24488340 TTTTTTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.45, C:0.26, G:0.02, T:0.28
Consensus pattern (23 bp):
AACTGACAACTTACATAACTTAC
Found at i:24488335 original size:16 final size:16
Alignment explanation
Indices: 24488288--24488340 Score: 65
Period size: 16 Copynumber: 3.3 Consensus size: 16
24488278 ATTAATATTA
*
24488288 TACATAACTGACAACT
1 TACATAACTTACAACT
24488304 TACATAACTTACAACT
1 TACATAACTTACAACT
24488320 TAC--AACTTACATAACT
1 TACATAACTTAC--AACT
24488336 TACAT
1 TACAT
24488341 TTTTTAATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
14 7 0.22
16 25 0.78
ACGTcount: A:0.43, C:0.25, G:0.02, T:0.30
Consensus pattern (16 bp):
TACATAACTTACAACT
Found at i:24488428 original size:65 final size:64
Alignment explanation
Indices: 24488326--24488852 Score: 483
Period size: 65 Copynumber: 8.1 Consensus size: 64
24488316 AACTTACAAC
* * *
24488326 TTACATAACTTACATTTT-TTAATTATTCATAAATTACATAACATACATTAATATTATACATAAA
1 TTACATAACTTA-ATTTTATTTATTATACATAAATTACATAACTTACATTAATATTATACATAAA
* *
24488390 TTACATAACTTAATTTTA--T-GT-T-C-T-TA-TACATAACTTACATTAATATTATACATAAA
1 TTACATAACTTAATTTTATTTATTATACATAAATTACATAACTTACATTAATATTATACATAAA
*
24488446 TTACATAACTTAATTTTATGTTATTATACATAACTTACATAACTTACATTAATATTATACATAAA
1 TTACATAACTTAATTTTAT-TTATTATACATAAATTACATAACTTACATTAATATTATACATAAA
* * * *
24488511 TTACATAACTTAA--TTAATTAATATACATAAGTTACATAACTTACATTAATATGATACATAAA
1 TTACATAACTTAATTTTATTTATTATACATAAATTACATAACTTACATTAATATTATACATAAA
* * ** *
24488573 TTACATAACTTAGTTAATTA-ATATTATACATATGTTACATAACTTACATTAATATGATACATAA
1 TTACATAACTTAATT--TTATTTATTATACATAAATTACATAACTTACATTAATATTATACATAA
24488637 A
64 A
* * * *
24488638 TTACATAACTTAGTTAATTAATATTATACATAACTTACAACTTACATAACTTACAACTTACA-AC
1 TTACATAACTTAATT--TT-AT-TTAT-TAT-ACATA-AA-TTACATAACTTAC-A-TTA-ATAT
*
24488702 T-TACATAAC
55 TATACATAAA
* * *
24488711 TTACATAACTTACATTTT-TTTAATTATTCATAAATTACATAACTTA-ATTAGTTAATATACATA
1 TTACATAACTTA-ATTTTATTT-ATTATACATAAATTACATAACTTACATTA-ATATTATACATA
24488774 AA
63 AA
*
24488776 TTACATAACTTAATTAATTAATTAATATTATACATAAATTACATAACTTAGTTAATTAATATTAT
1 TTACATAACTTAATT--TT-ATT--TATTATACATAAATTACATAACTTA---CATTAATATTAT
*
24488841 ACATAAC
58 ACATAAA
24488848 TTACA
1 TTACA
24488853 ACTTACATAA
Statistics
Matches: 390, Mismatches: 35, Indels: 68
0.79 0.07 0.14
Matches are distributed among these distances:
56 47 0.12
57 1 0.00
58 1 0.00
59 2 0.01
60 2 0.01
61 2 0.01
62 55 0.14
63 12 0.03
64 18 0.05
65 123 0.32
66 18 0.05
67 2 0.01
68 8 0.02
69 29 0.07
70 8 0.02
72 31 0.08
73 24 0.06
74 6 0.02
75 1 0.00
ACGTcount: A:0.45, C:0.13, G:0.02, T:0.41
Consensus pattern (64 bp):
TTACATAACTTAATTTTATTTATTATACATAAATTACATAACTTACATTAATATTATACATAAA
Found at i:24488486 original size:9 final size:9
Alignment explanation
Indices: 24488472--24488904 Score: 128
Period size: 9 Copynumber: 49.7 Consensus size: 9
24488462 TATGTTATTA
24488472 TACATAACT
1 TACATAACT
24488481 TACATAACT
1 TACATAACT
*
24488490 TACATTAATATT
1 TACA-T-A-ACT
*
24488502 ATACATAAAT
1 -TACATAACT
24488512 TACATAACT
1 TACATAACT
24488521 TA-ATTAA-T
1 TACA-TAACT
24488529 TA-AT-A--
1 TACATAACT
*
24488534 TACATAAGT
1 TACATAACT
24488543 TACATAACT
1 TACATAACT
*
24488552 TACATTAATAT
1 TACA-TAA-CT
*
24488563 GATACATAAAT
1 --TACATAACT
24488574 TACATAACT
1 TACATAACT
**
24488583 TAGTTAA-T
1 TACATAACT
*
24488591 TA-AT-ATT
1 TACATAACT
**
24488598 ATACATATGT
1 -TACATAACT
24488608 TACATAACT
1 TACATAACT
*
24488617 TACATTAATAT
1 TACA-TAA-CT
*
24488628 GATACATAAAT
1 --TACATAACT
24488639 TACATAACT
1 TACATAACT
**
24488648 TAGTTAA-T
1 TACATAACT
*
24488656 TA-AT-ATT
1 TACATAACT
24488663 ATACATAACT
1 -TACATAACT
24488673 TAC--AACT
1 TACATAACT
24488680 TACATAACT
1 TACATAACT
24488689 TAC--AACT
1 TACATAACT
24488696 TAC--AACT
1 TACATAACT
24488703 TACATAACT
1 TACATAACT
24488712 TACATAACT
1 TACATAACT
***
24488721 TACATTTTTT
1 TACA-TAACT
*
24488731 TA-ATTA-T
1 TACATAACT
*
24488738 T-CATAAAT
1 TACATAACT
24488746 TACATAACT
1 TACATAACT
* *
24488755 TA-ATTAGT
1 TACATAACT
24488763 TA-AT-A--
1 TACATAACT
*
24488768 TACATAAAT
1 TACATAACT
24488777 TACATAACT
1 TACATAACT
24488786 TA-ATTAA-T
1 TACA-TAACT
*
24488794 TA-ATTAATATT
1 TACA-T-A-ACT
*
24488805 ATACATAAAT
1 -TACATAACT
24488815 TACATAACT
1 TACATAACT
**
24488824 TAGTTAA-T
1 TACATAACT
*
24488832 TA-AT-ATT
1 TACATAACT
24488839 ATACATAACT
1 -TACATAACT
24488849 TAC--AACT
1 TACATAACT
24488856 TACATAACT
1 TACATAACT
24488865 TAC--AACT
1 TACATAACT
24488872 TACATAACT
1 TACATAACT
* ** *
24488881 TATACGACA
1 TACATAACT
24488890 TACATAACT
1 TACATAACT
24488899 TACATA
1 TACATA
24488905 GCATAATTTG
Statistics
Matches: 331, Mismatches: 42, Indels: 102
0.70 0.09 0.21
Matches are distributed among these distances:
5 4 0.01
6 8 0.02
7 50 0.15
8 39 0.12
9 174 0.53
10 21 0.06
11 10 0.03
12 12 0.04
13 13 0.04
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.38
Consensus pattern (9 bp):
TACATAACT
Found at i:24488507 original size:22 final size:22
Alignment explanation
Indices: 24488481--24488643 Score: 66
Period size: 22 Copynumber: 7.6 Consensus size: 22
24488471 ATACATAACT
*
24488481 TACATAACTTACATTAATATTA
1 TACATAAATTACATTAATATTA
*
24488503 TACATAAATTACA-T-A-ACT-
1 TACATAAATTACATTAATATTA
* *
24488521 TA-ATTAATTA-ATATACATAAGT-
1 TACATAAATTACAT-TA-AT-ATTA
* *
24488543 TACATAACTTACATTAATATGA
1 TACATAAATTACATTAATATTA
24488565 TACATAAATTACA-TAACTTAGTTA
1 TACATAAATTACATTAA--TA-TTA
*
24488589 -A-TTAATATT--A-TACATATGT-
1 TACATAA-ATTACATTA-ATAT-TA
* *
24488608 TACATAACTTACATTAATATGA
1 TACATAAATTACATTAATATTA
24488630 TACATAAATTACAT
1 TACATAAATTACAT
24488644 AACTTAGTTA
Statistics
Matches: 105, Mismatches: 15, Indels: 42
0.65 0.09 0.26
Matches are distributed among these distances:
16 1 0.01
17 7 0.07
18 3 0.03
19 3 0.03
20 8 0.08
21 11 0.10
22 52 0.50
23 16 0.15
24 4 0.04
ACGTcount: A:0.47, C:0.12, G:0.03, T:0.39
Consensus pattern (22 bp):
TACATAAATTACATTAATATTA
Found at i:24488599 original size:127 final size:123
Alignment explanation
Indices: 24488326--24488676 Score: 448
Period size: 127 Copynumber: 2.9 Consensus size: 123
24488316 AACTTACAAC
** * *
24488326 TTACATAACTTACATTTTTTA-ATTATTCATAAATTACATAACATACATTAATATTATACATAAA
1 TTACATAACTTA-ATTTTAGATATTATACATAAATTACATAACTTACATTAATATTATACATAAA
* * * *
24488390 TTACATAACTTAATT--TT-ATGTTCTTATACATAACTTACATTAATATTATACATAAA
65 TTACATAACTTAATTAATTAATATACTAATACATAACTTACATTAATATGATACATAAA
* *
24488446 TTACATAACTTAATTTTATGTTATTATACATAACTTACATAACTTACATTAATATTATACATAAA
1 TTACATAACTTAATTTTA-GATATTATACATAAATTACATAACTTACATTAATATTATACATAAA
24488511 TTACATAACTTAATTAATTAATATACATAAGTTACATAACTTACATTAATATGATACATAAA
65 TTACATAACTTAATTAATTAATATAC-TAA--TACATAACTTACATTAATATGATACATAAA
* ** *
24488573 TTACATAACTTAGTTAATTA-ATATTATACATATGTTACATAACTTACATTAATATGATACATAA
1 TTACATAACTTAATT--TTAGATATTATACATAAATTACATAACTTACATTAATATTATACATAA
*
24488637 ATTACATAACTTAGTTAATTAATAT--T-ATACATAACTTACA
64 ATTACATAACTTAATTAATTAATATACTAATACATAACTTACA
24488677 ACTTACATAA
Statistics
Matches: 205, Mismatches: 16, Indels: 19
0.85 0.07 0.08
Matches are distributed among these distances:
119 5 0.02
120 12 0.06
121 68 0.33
123 3 0.01
124 5 0.02
125 2 0.01
127 107 0.52
129 3 0.01
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.41
Consensus pattern (123 bp):
TTACATAACTTAATTTTAGATATTATACATAAATTACATAACTTACATTAATATTATACATAAAT
TACATAACTTAATTAATTAATATACTAATACATAACTTACATTAATATGATACATAAA
Found at i:24488681 original size:7 final size:7
Alignment explanation
Indices: 24488669--24488706 Score: 58
Period size: 7 Copynumber: 5.1 Consensus size: 7
24488659 TATTATACAT
24488669 AACTTAC
1 AACTTAC
24488676 AACTTAC
1 AACTTAC
24488683 ATAACTTAC
1 --AACTTAC
24488692 AACTTAC
1 AACTTAC
24488699 AACTTAC
1 AACTTAC
24488706 A
1 A
24488707 TAACTTACAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 22 0.76
9 7 0.24
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.29
Consensus pattern (7 bp):
AACTTAC
Found at i:24488685 original size:16 final size:16
Alignment explanation
Indices: 24488664--24488724 Score: 90
Period size: 16 Copynumber: 3.8 Consensus size: 16
24488654 ATTAATATTA
24488664 TACATAACTTACAACT
1 TACATAACTTACAACT
24488680 TACATAACTTACAACT
1 TACATAACTTACAACT
24488696 TAC--AACTTACATAACT
1 TACATAACTTAC--AACT
24488712 TACATAACTTACA
1 TACATAACTTACA
24488725 TTTTTTTAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
14 7 0.17
16 27 0.66
18 7 0.17
ACGTcount: A:0.44, C:0.25, G:0.00, T:0.31
Consensus pattern (16 bp):
TACATAACTTACAACT
Found at i:24488699 original size:23 final size:24
Alignment explanation
Indices: 24488664--24488724 Score: 97
Period size: 23 Copynumber: 2.5 Consensus size: 24
24488654 ATTAATATTA
24488664 TACATAACTTACAACTTACATAACT
1 TACA-AACTTACAACTTACATAACT
24488689 TAC-AACTTACAACTTACATAACT
1 TACAAACTTACAACTTACATAACT
24488712 TACATAACTTACA
1 TACA-AACTTACA
24488725 TTTTTTTAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
23 23 0.68
25 11 0.32
ACGTcount: A:0.44, C:0.25, G:0.00, T:0.31
Consensus pattern (24 bp):
TACAAACTTACAACTTACATAACT
Found at i:24488836 original size:34 final size:34
Alignment explanation
Indices: 24488428--24488852 Score: 368
Period size: 34 Copynumber: 12.7 Consensus size: 34
24488418 CATAACTTAC
24488428 ATTAATATTATACATAAATTACATAACTTAATT-
1 ATTAATATTATACATAAATTACATAACTTAATTA
* * *
24488461 -TTATGTTATTATACATAACTTACATAACTT-A--C
1 ATTA--ATATTATACATAAATTACATAACTTAATTA
24488493 ATTAATATTATACATAAATTACATAACTTAATTA
1 ATTAATATTATACATAAATTACATAACTTAATTA
* *
24488527 ATT-A-A-TATACATAAGTTACATAACTT-A--C
1 ATTAATATTATACATAAATTACATAACTTAATTA
* *
24488555 ATTAATATGATACATAAATTACATAACTTAGTTA
1 ATTAATATTATACATAAATTACATAACTTAATTA
** *
24488589 ATTAATATTATACATATGTTACATAACTT-A--C
1 ATTAATATTATACATAAATTACATAACTTAATTA
* *
24488620 ATTAATATGATACATAAATTACATAACTTAGTTA
1 ATTAATATTATACATAAATTACATAACTTAATTA
* * *
24488654 ATTAATATTATACATAACTTACAACTTACATAACTTACA
1 ATTAATATTATACATAAATTAC-A-TAACTTAA-TT--A
* * *
24488693 ACTTACA-ACT-TACATAACTTACATAACTTACATTT
1 A-TTA-ATATTATACATAAATTACATAACTTA-ATTA
* * *
24488728 TTTTA-ATTATTCATAAATTACATAACTTAATTA
1 ATTAATATTATACATAAATTACATAACTTAATTA
*
24488761 GTT-A-A-TATACATAAATTACATAACTTAATTAATTA
1 ATTAATATTATACATAAATTACATAAC----TTAATTA
*
24488796 ATTAATATTATACATAAATTACATAACTTAGTTA
1 ATTAATATTATACATAAATTACATAACTTAATTA
*
24488830 ATTAATATTATACATAACTTACA
1 ATTAATATTATACATAAATTACA
24488853 ACTTACATAA
Statistics
Matches: 319, Mismatches: 41, Indels: 63
0.75 0.10 0.15
Matches are distributed among these distances:
28 3 0.01
29 1 0.00
30 2 0.01
31 106 0.33
32 7 0.02
33 13 0.04
34 120 0.38
35 10 0.03
36 6 0.02
37 10 0.03
38 21 0.07
39 14 0.04
40 5 0.02
41 1 0.00
ACGTcount: A:0.45, C:0.12, G:0.02, T:0.40
Consensus pattern (34 bp):
ATTAATATTATACATAAATTACATAACTTAATTA
Found at i:24488861 original size:16 final size:16
Alignment explanation
Indices: 24488840--24488902 Score: 90
Period size: 16 Copynumber: 3.8 Consensus size: 16
24488830 ATTAATATTA
24488840 TACATAACTTACAACT
1 TACATAACTTACAACT
24488856 TACATAACTTACAACT
1 TACATAACTTACAACT
* *
24488872 TACATAACTTATACGACA
1 TACATAAC-T-TACAACT
24488890 TACATAACTTACA
1 TACATAACTTACA
24488903 TAGCATAATT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
16 27 0.64
17 2 0.05
18 13 0.31
ACGTcount: A:0.44, C:0.24, G:0.02, T:0.30
Consensus pattern (16 bp):
TACATAACTTACAACT
Found at i:24488957 original size:26 final size:25
Alignment explanation
Indices: 24488906--24488962 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
24488896 ACTTACATAG
* *
24488906 CATAATTTGACTAATACACAACTTA
1 CATAATTCGACTAATAAACAACTTA
* *
24488931 CATAATTCGACATAATAAATAATTTA
1 CATAATTCGAC-TAATAAACAACTTA
24488957 CATAAT
1 CATAAT
24488963 ACATAACTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
25 10 0.37
26 17 0.63
ACGTcount: A:0.47, C:0.16, G:0.04, T:0.33
Consensus pattern (25 bp):
CATAATTCGACTAATAAACAACTTA
Found at i:24488961 original size:16 final size:16
Alignment explanation
Indices: 24488940--24488973 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
24488930 ACATAATTCG
*
24488940 ACATAATAAATAATTT
1 ACATAATAAATAACTT
*
24488956 ACATAATACATAACTT
1 ACATAATAAATAACTT
24488972 AC
1 AC
24488974 GTAGCTTAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.53, C:0.15, G:0.00, T:0.32
Consensus pattern (16 bp):
ACATAATAAATAACTT
Found at i:24494514 original size:21 final size:21
Alignment explanation
Indices: 24494488--24494552 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 21
24494478 TAAAGCAGAT
24494488 GCGGCAGCAAGAGAAGTAGAG
1 GCGGCAGCAAGAGAAGTAGAG
* * * *
24494509 GCGGCAACGAGAGAAGTACAA
1 GCGGCAGCAAGAGAAGTAGAG
* * *
24494530 GCTGCAGCAAGGGAAGCAGAG
1 GCGGCAGCAAGAGAAGTAGAG
24494551 GC
1 GC
24494553 TAAAGCGAGG
Statistics
Matches: 33, Mismatches: 11, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.37, C:0.18, G:0.40, T:0.05
Consensus pattern (21 bp):
GCGGCAGCAAGAGAAGTAGAG
Found at i:24494563 original size:21 final size:21
Alignment explanation
Indices: 24494539--24494592 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
24494529 AGCTGCAGCA
24494539 AGGGAAGCAGAGGCTAAAGCG
1 AGGGAAGCAGAGGCTAAAGCG
**
24494560 AGGGAAGCAGAGGCTGCAGCG
1 AGGGAAGCAGAGGCTAAAGCG
24494581 AGGGAAGCAGAG
1 AGGGAAGCAGAG
24494593 AAGCTTCAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.35, C:0.15, G:0.46, T:0.04
Consensus pattern (21 bp):
AGGGAAGCAGAGGCTAAAGCG
Found at i:24494964 original size:43 final size:42
Alignment explanation
Indices: 24494889--24495139 Score: 139
Period size: 43 Copynumber: 5.9 Consensus size: 42
24494879 ATCTGCCAAA
** * * * *
24494889 TTTAGTGGCGTTT-TTTTAAAAAACGCCACTAAAGGTGTTGGCC
1 TTTAGTGGCGTTTATGGT-AAAAGCGCCACTAAAGATCTT-GTC
* * * * *
24494932 TTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGACCCTTATC
1 TTTAGTGGCGTTTATGGTAAAAGCGCCACTAAAGA-TCTTGTC
* * *
24494975 TTTAGCGGCGTTTATGGAAAAAGCGCCACTAAAGATCATAGTC
1 TTTAGTGGCGTTTATGGTAAAAGCGCCACTAAAGATC-TTGTC
* * * **
24495018 TTTAGTGGCGTTTATGGTCAAAGCGCCGCTATAGATCAGGGTC
1 TTTAGTGGCGTTTATGGTAAAAGCGCCACTAAAGATC-TTGTC
* ** * * *
24495061 TATT-GGGGCGTTTGA-GGGGAAAGCGCCGCTAAAGACCCTGATC
1 T-TTAGTGGCGTTT-ATGGTAAAAGCGCCACTAAAGATCTTG-TC
* * * * *
24495104 TTTAGTGGTGTTTTTGGGAGAAGCGCCGCTAAAGAT
1 TTTAGTGGCGTTTATGGTAAAAGCGCCACTAAAGAT
24495140 AAGGGTCTTT
Statistics
Matches: 162, Mismatches: 38, Indels: 16
0.75 0.18 0.07
Matches are distributed among these distances:
42 4 0.02
43 151 0.93
44 7 0.04
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.29
Consensus pattern (42 bp):
TTTAGTGGCGTTTATGGTAAAAGCGCCACTAAAGATCTTGTC
Found at i:24495071 original size:86 final size:86
Alignment explanation
Indices: 24494931--24495152 Score: 236
Period size: 86 Copynumber: 2.6 Consensus size: 86
24494921 AGGTGTTGGC
* ****
24494931 CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGACCCTTATCTTTAGCGGCGTTT-ATGGAAA
1 CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGA-GGAAA
*
24494995 AAGCGCCACTAAAGATCAT-AGT
65 AAGCGCCACTAAAGACCATGA-T
* * * **
24495017 CTTTAGTGGCGTTTATGGTCAAAGCGCCGCTATAGATCAGGGTCTATT-GGGGCGTTTGAGGGGA
1 CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATCAGGGTCT-TTAGCGGCGTTTGAGGAAA
* *
24495081 AAGCGCCGCTAAAGACCCTGAT
65 AAGCGCCACTAAAGACCATGAT
* * *
24495103 CTTTAGTGGTGTTTTTGG-GAGAAGCGCCGCTAAAGATAAGGGTCTTTAGC
1 CTTTAGTGGCGTTTTTGGTCA-AAGCGCCGCTAAAGATCAGGGTCTTTAGC
24495153 AAGCGCCGCT
Statistics
Matches: 112, Mismatches: 19, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
85 3 0.03
86 105 0.94
87 4 0.04
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (86 bp):
CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGAGGAAAA
AGCGCCACTAAAGACCATGAT
Found at i:24495149 original size:43 final size:43
Alignment explanation
Indices: 24494931--24495151 Score: 162
Period size: 43 Copynumber: 5.1 Consensus size: 43
24494921 AGGTGTTGGC
* * * ****
24494931 CTTTAGTGGCGTTTTTGGTCA-AAGCGCCGCTAAAGACCCTTAT
1 CTTTAGTGGCGTTTATGG-GAGAAGCGCCGCTAAAGATCAGGGT
* * * * **
24494974 CTTTAGCGGCGTTTATGGAAAAAGCGCCACTAAAGATCATAGT
1 CTTTAGTGGCGTTTATGGGAGAAGCGCCGCTAAAGATCAGGGT
* *
24495017 CTTTAGTGGCGTTTATGGTCA-AAGCGCCGCTATAGATCAGGGT
1 CTTTAGTGGCGTTTATGG-GAGAAGCGCCGCTAAAGATCAGGGT
* * * ** *
24495060 CTATT-GGGGCGTTTGAGGGGA-AAGCGCCGCTAAAGACCCTGAT
1 CT-TTAGTGGCGTTT-ATGGGAGAAGCGCCGCTAAAGATCAGGGT
* * *
24495103 CTTTAGTGGTGTTTTTGGGAGAAGCGCCGCTAAAGATAAGGGT
1 CTTTAGTGGCGTTTATGGGAGAAGCGCCGCTAAAGATCAGGGT
24495146 CTTTAG
1 CTTTAG
24495152 CAAGCGCCGC
Statistics
Matches: 141, Mismatches: 31, Indels: 12
0.77 0.17 0.07
Matches are distributed among these distances:
42 7 0.05
43 128 0.91
44 6 0.04
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.29
Consensus pattern (43 bp):
CTTTAGTGGCGTTTATGGGAGAAGCGCCGCTAAAGATCAGGGT
Found at i:24514367 original size:9 final size:9
Alignment explanation
Indices: 24514353--24514383 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
24514343 GTTAAACGAA
24514353 TCGAGTTAT
1 TCGAGTTAT
*
24514362 TCGAGTTAA
1 TCGAGTTAT
24514371 TCGAGTTAT
1 TCGAGTTAT
24514380 TCGA
1 TCGA
24514384 ATCAACCCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:24514456 original size:9 final size:9
Alignment explanation
Indices: 24514437--24514473 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
24514427 TGAGTTTTCG
24514437 AATTCGAAT
1 AATTCGAAT
24514446 AACTT-GAAT
1 AA-TTCGAAT
24514455 AATTCGAAT
1 AATTCGAAT
24514464 AATTCGAAT
1 AATTCGAAT
24514473 A
1 A
24514474 TCAAACTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 2 0.08
9 22 0.85
10 2 0.08
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:24514825 original size:20 final size:19
Alignment explanation
Indices: 24514800--24514875 Score: 70
Period size: 19 Copynumber: 4.1 Consensus size: 19
24514790 TTTTTAATAT
24514800 TTTCCCTCTAAACTATTTAC
1 TTTCCCTCTAAACT-TTTAC
24514820 TTTCCCTC-AAACTTTTA-
1 TTTCCCTCTAAACTTTTAC
* * *
24514837 -TTCTC-CAAAACTTTTTAT
1 TTTCCCTCTAAAC-TTTTAC
*
24514855 TTTCCCCCTAAACTTTTAC
1 TTTCCCTCTAAACTTTTAC
24514874 TT
1 TT
24514876 CTCACCCTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
15 1 0.02
16 8 0.17
17 5 0.11
18 4 0.09
19 16 0.34
20 13 0.28
ACGTcount: A:0.24, C:0.29, G:0.00, T:0.47
Consensus pattern (19 bp):
TTTCCCTCTAAACTTTTAC
Found at i:24514859 original size:35 final size:37
Alignment explanation
Indices: 24514809--24514878 Score: 99
Period size: 35 Copynumber: 1.9 Consensus size: 37
24514799 TTTTCCCTCT
*
24514809 AAACTATTTACTTTCCCTC-AAACTTTTA-TTCTCCA
1 AAACTATTTACTTTCCCCCTAAACTTTTACTTCTCCA
* *
24514844 AAACTTTTTATTTTCCCCCTAAACTTTTACTTCTC
1 AAACTATTTACTTTCCCCCTAAACTTTTACTTCTC
24514879 ACCCTTTACT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
35 16 0.53
36 9 0.30
37 5 0.17
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.46
Consensus pattern (37 bp):
AAACTATTTACTTTCCCCCTAAACTTTTACTTCTCCA
Found at i:24516266 original size:36 final size:36
Alignment explanation
Indices: 24516192--24516269 Score: 111
Period size: 36 Copynumber: 2.2 Consensus size: 36
24516182 TACTCAATAT
* ** *
24516192 ATACATACCTTTGCCTAGTCTCTTTATCATTTCTTA
1 ATACATACCTTTGCCTAGTCACTTTATCATCACCTA
*
24516228 ATACATACCTTTGCTTAGTCACTTTATCATCACCTA
1 ATACATACCTTTGCCTAGTCACTTTATCATCACCTA
24516264 ATACAT
1 ATACAT
24516270 CCATACCTGT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.27, C:0.26, G:0.05, T:0.42
Consensus pattern (36 bp):
ATACATACCTTTGCCTAGTCACTTTATCATCACCTA
Found at i:24523963 original size:11 final size:11
Alignment explanation
Indices: 24523949--24524032 Score: 57
Period size: 11 Copynumber: 7.3 Consensus size: 11
24523939 TTTTTCTTTC
24523949 TTTTTATTTG-
1 TTTTTATTTGT
* *
24523959 TTTTTCTTTAT
1 TTTTTATTTGT
24523970 TTCCTTT-TTTAGT
1 TT--TTTATTT-GT
24523983 TTTTTATTTGTTT
1 TTTTTATTTG--T
24523996 TTCTTTATTT-T
1 TT-TTTATTTGT
24524007 TTTATTATTTGT
1 TTT-TTATTTGT
*
24524019 TTATTATTTGT
1 TTTTTATTTGT
24524030 TTT
1 TTT
24524033 ATAATATTTT
Statistics
Matches: 59, Mismatches: 5, Indels: 19
0.71 0.06 0.23
Matches are distributed among these distances:
10 9 0.15
11 25 0.42
12 9 0.15
13 9 0.15
14 7 0.12
ACGTcount: A:0.11, C:0.05, G:0.06, T:0.79
Consensus pattern (11 bp):
TTTTTATTTGT
Found at i:24523992 original size:34 final size:36
Alignment explanation
Indices: 24523949--24524032 Score: 118
Period size: 34 Copynumber: 2.4 Consensus size: 36
24523939 TTTTTCTTTC
24523949 TTTTTATTTGTTTTTCTTTATTTCCTT-TT-TTAGT
1 TTTTTATTTGTTTTTCTTTATTTCCTTATTATTAGT
** *
24523983 TTTTTATTTGTTTTTCTTTATTTTTTTATTATTTGT
1 TTTTTATTTGTTTTTCTTTATTTCCTTATTATTAGT
*
24524019 TTATTATTTGTTTT
1 TTTTTATTTGTTTT
24524033 ATAATATTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
34 25 0.57
35 2 0.05
36 17 0.39
ACGTcount: A:0.11, C:0.05, G:0.06, T:0.79
Consensus pattern (36 bp):
TTTTTATTTGTTTTTCTTTATTTCCTTATTATTAGT
Found at i:24524032 original size:25 final size:25
Alignment explanation
Indices: 24523982--24524041 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
24523972 CCTTTTTTAG
* *
24523982 TTTT-TTATTTGTTTTTCTTTATTT
1 TTTTATTATTTGTTTTTATTTAGTT
24524006 TTTTATTATTTGTTTATTATTT-GTT
1 TTTTATTATTTGTTT-TTATTTAGTT
* *
24524031 TTATAATATTT
1 TTTTATTATTT
24524042 TAAATCTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 4 0.13
25 21 0.70
26 5 0.17
ACGTcount: A:0.17, C:0.02, G:0.05, T:0.77
Consensus pattern (25 bp):
TTTTATTATTTGTTTTTATTTAGTT
Found at i:24524041 original size:14 final size:12
Alignment explanation
Indices: 24523981--24524034 Score: 60
Period size: 11 Copynumber: 4.6 Consensus size: 12
24523971 TCCTTTTTTA
24523981 GTTTT-TTATTT
1 GTTTTATTATTT
*
24523992 GTTTTTCTTTATTT
1 G-TTTT-ATTATTT
24524006 -TTTTATTATTT
1 GTTTTATTATTT
24524017 G-TTTATTATTT
1 GTTTTATTATTT
24524028 GTTTTAT
1 GTTTTAT
24524035 AATATTTTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
11 18 0.49
12 13 0.35
14 6 0.16
ACGTcount: A:0.13, C:0.02, G:0.07, T:0.78
Consensus pattern (12 bp):
GTTTTATTATTT
Found at i:24524043 original size:22 final size:22
Alignment explanation
Indices: 24524000--24524043 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
24523990 TTGTTTTTCT
* *
24524000 TTATTTTTTTATTATTTGTTTA
1 TTATTTTTTTATAATATGTTTA
24524022 TTATTTGTTTTATAATAT-TTTA
1 TTATTT-TTTTATAATATGTTTA
24524044 AATCTTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.73
Consensus pattern (22 bp):
TTATTTTTTTATAATATGTTTA
Found at i:24524079 original size:22 final size:22
Alignment explanation
Indices: 24524032--24524099 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
24524022 TTATTTGTTT
* *
24524032 TATAATATTTTAAATCTTTTATAA
1 TATAATTTTTTAAA-ATTTTA-AA
*
24524056 TATTATTTTTTAAAATTTTAAA
1 TATAATTTTTTAAAATTTTAAA
* *
24524078 TATAATTTTTTAATATTATAAA
1 TATAATTTTTTAAAATTTTAAA
24524100 ACATTTAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
22 21 0.55
23 5 0.13
24 12 0.32
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.56
Consensus pattern (22 bp):
TATAATTTTTTAAAATTTTAAA
Found at i:24524198 original size:15 final size:15
Alignment explanation
Indices: 24524178--24524216 Score: 55
Period size: 13 Copynumber: 2.7 Consensus size: 15
24524168 CGATTTAAAA
24524178 TTTAAAATATTATTT
1 TTTAAAATATTATTT
24524193 TTT-AAA-ATTATTT
1 TTTAAAATATTATTT
*
24524206 TTAAAAATATT
1 TTTAAAATATT
24524217 CAAACATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 9 0.43
14 6 0.29
15 6 0.29
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TTTAAAATATTATTT
Found at i:24530620 original size:28 final size:29
Alignment explanation
Indices: 24530552--24530627 Score: 91
Period size: 30 Copynumber: 2.6 Consensus size: 29
24530542 TTGGTGGTTG
24530552 GTCTGGGTGATATGAACTCGAACCGCCCAT
1 GTCTGGGTGATATGAACTCGAACCG-CCAT
*** * *
24530582 GTCCAAGTGATATGAACTCGAACTG-TAT
1 GTCTGGGTGATATGAACTCGAACCGCCAT
24530610 GTCTGGGTGATATGAACT
1 GTCTGGGTGATATGAACT
24530628 ACTTTGCGAC
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 17 0.45
30 21 0.55
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (29 bp):
GTCTGGGTGATATGAACTCGAACCGCCAT
Found at i:24533470 original size:21 final size:22
Alignment explanation
Indices: 24533446--24533491 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
24533436 CAACTTTCAC
* *
24533446 TTTTTT-TTCTCATTTTTTTTA
1 TTTTTTATCCTCAGTTTTTTTA
*
24533467 TTTTTTATCCTCCGTTTTTTTA
1 TTTTTTATCCTCAGTTTTTTTA
24533489 TTT
1 TTT
24533492 CTATTAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.09, C:0.13, G:0.02, T:0.76
Consensus pattern (22 bp):
TTTTTTATCCTCAGTTTTTTTA
Found at i:24535633 original size:19 final size:19
Alignment explanation
Indices: 24535609--24535646 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
24535599 AGTGGCTAGT
24535609 TATGTTTTAG-TTAATTAAA
1 TATG-TTTAGTTTAATTAAA
24535628 TATGTTTAGTTTAATTAAA
1 TATGTTTAGTTTAATTAAA
24535647 CATAATTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.53
Consensus pattern (19 bp):
TATGTTTAGTTTAATTAAA
Found at i:24535678 original size:22 final size:24
Alignment explanation
Indices: 24535638--24535681 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
24535628 TATGTTTAGT
24535638 TTAATTAAACATAATTAATTAAGG
1 TTAATTAAACATAATTAATTAAGG
*
24535662 TTAA-TAAA-ATACTTAATTAA
1 TTAATTAAACATAATTAATTAA
24535682 AGTATAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 11 0.58
23 4 0.21
24 4 0.21
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.39
Consensus pattern (24 bp):
TTAATTAAACATAATTAATTAAGG
Found at i:24541708 original size:40 final size:40
Alignment explanation
Indices: 24541626--24541713 Score: 115
Period size: 40 Copynumber: 2.2 Consensus size: 40
24541616 TTACTGAAAC
* *
24541626 AAACGCCGCTATAGATCAAGCATTAGCGGTGCTTTTCAAA
1 AAACGCCGCTATAGATCAAGCATTAGCGGCGATTTTCAAA
* * *
24541666 AAATGCCGCTATAGATCGAGCATTAGCGGCGAATTTT-GAA
1 AAACGCCGCTATAGATCAAGCATTAGCGGCG-ATTTTCAAA
24541706 AAACGCCG
1 AAACGCCG
24541714 TAAAAAAGTT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
40 37 0.90
41 4 0.10
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.23
Consensus pattern (40 bp):
AAACGCCGCTATAGATCAAGCATTAGCGGCGATTTTCAAA
Found at i:24541774 original size:66 final size:72
Alignment explanation
Indices: 24541685--24541858 Score: 198
Period size: 66 Copynumber: 2.4 Consensus size: 72
24541675 TATAGATCGA
** * *
24541685 GCATTAGCGGCGAATTTTGAAAAACGCCGTAAAAAAGTTGAGCAAAAC-A-CG-TTG-G-TGAGC
1 GCATTAGCGGCGCTTTTTAAAAAACGCCGCAAAAAAGTTGAGCAAAACGACCGTTTGTGTTGAGC
24541745 -TTAGTG
66 TTTAGTG
* *
24541751 GCATTAGCGGCGCTTTTTAAAAAATGTCGCAAAAAAGTTGAGCAAAACGACGTCGTTTGTTGTTG
1 GCATTAGCGGCGCTTTTTAAAAAACGCCGCAAAAAAGTTGAGCAAAACGAC--CGTTTG-TGTTG
24541816 AGCTTTAGTG
63 AGCTTTAGTG
* *
24541826 CCATTAGCGGCGCTTTTTAAAAAAATGCCGCAA
1 GCATTAGCGGCGCTTTTT-AAAAAACGCCGCAA
24541859 TAGATCGAGA
Statistics
Matches: 90, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
66 42 0.47
67 1 0.01
70 2 0.02
71 3 0.03
73 1 0.01
74 5 0.06
75 23 0.26
76 13 0.14
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (72 bp):
GCATTAGCGGCGCTTTTTAAAAAACGCCGCAAAAAAGTTGAGCAAAACGACCGTTTGTGTTGAGC
TTTAGTG
Found at i:24541996 original size:7 final size:7
Alignment explanation
Indices: 24541984--24542044 Score: 50
Period size: 7 Copynumber: 8.6 Consensus size: 7
24541974 ATCATTTTAT
24541984 TTTAGGG
1 TTTAGGG
24541991 TTTAGGG
1 TTTAGGG
**
24541998 TTTAGTA
1 TTTAGGG
*
24542005 TTTAAGG
1 TTTAGGG
**
24542012 TTTAATG
1 TTTAGGG
* *
24542019 TCTATGG
1 TTTAGGG
24542026 TTTAGGG
1 TTTAGGG
24542033 TTTTAGGG
1 -TTTAGGG
24542041 TTTA
1 TTTA
24542045 TGATATAATG
Statistics
Matches: 42, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
7 35 0.83
8 7 0.17
ACGTcount: A:0.20, C:0.02, G:0.30, T:0.49
Consensus pattern (7 bp):
TTTAGGG
Found at i:24542119 original size:21 final size:21
Alignment explanation
Indices: 24542070--24542121 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
24542060 TATTTTGGTA
* *
24542070 TTAGAGTTTTGAGTTTAGGGT
1 TTAGGGTTTAGAGTTTAGGGT
* *
24542091 TTATGGTTTAGAGTTTATGGT
1 TTAGGGTTTAGAGTTTAGGGT
*
24542112 TTGGGGTTTA
1 TTAGGGTTTA
24542122 TTATTTTATA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (21 bp):
TTAGGGTTTAGAGTTTAGGGT
Found at i:24542120 original size:14 final size:14
Alignment explanation
Indices: 24541984--24542122 Score: 68
Period size: 14 Copynumber: 9.9 Consensus size: 14
24541974 ATCATTTTAT
*
24541984 TTTAGGGTTTAGGG
1 TTTAGGGTTTATGG
** *
24541998 TTTAGTATTTAAGG
1 TTTAGGGTTTATGG
** *
24542012 TTTAATGTCTATGG
1 TTTAGGGTTTATGG
*
24542026 TTTAGGGTTTTAGGG
1 TTTAGGG-TTTATGG
* * *
24542041 TTTATGATATAAT-G
1 TTTAGGGT-TTATGG
***
24542055 TTTATTATTT-TGG
1 TTTAGGGTTTATGG
*
24542068 TATTAGAGTTT-TGAG
1 T-TTAGGGTTTATG-G
24542083 TTTAGGGTTTATGG
1 TTTAGGGTTTATGG
*
24542097 TTTAGAGTTTATGG
1 TTTAGGGTTTATGG
*
24542111 TTTGGGGTTTAT
1 TTTAGGGTTTAT
24542123 TATTTTATAG
Statistics
Matches: 95, Mismatches: 24, Indels: 12
0.73 0.18 0.09
Matches are distributed among these distances:
12 1 0.01
13 3 0.03
14 75 0.79
15 16 0.17
ACGTcount: A:0.20, C:0.01, G:0.28, T:0.51
Consensus pattern (14 bp):
TTTAGGGTTTATGG
Found at i:24547973 original size:22 final size:20
Alignment explanation
Indices: 24547929--24547973 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
24547919 GAAATAAAAC
* *
24547929 AAAAATTAAATAAAATAGTA
1 AAAAATAAAATAAAATAGAA
24547949 AAAAATAATAATAATAATAGAA
1 AAAAATAA-AATAA-AATAGAA
24547971 AAA
1 AAA
24547974 TAAAAATGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 7 0.33
21 5 0.24
22 9 0.43
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.22
Consensus pattern (20 bp):
AAAAATAAAATAAAATAGAA
Found at i:24555783 original size:43 final size:43
Alignment explanation
Indices: 24555736--24555862 Score: 144
Period size: 43 Copynumber: 3.1 Consensus size: 43
24555726 ACGGTACTTT
*
24555736 TAGCGGCGTTTGTGATAAAAGTGCCGCTAAAGGTCATGTTCTA
1 TAGCGGCGTTTGTGATAAAAGTGTCGCTAAAGGTCATGTTCTA
* * *
24555779 TA---GC----G-GATAAAAGCGTCGCTAAAGGTCATGCTCTT
1 TAGCGGCGTTTGTGATAAAAGTGTCGCTAAAGGTCATGTTCTA
* *
24555814 TAGCGGCGTTTGTGATAAAAGTGTTGTTAAAGGTCATGTTCTA
1 TAGCGGCGTTTGTGATAAAAGTGTCGCTAAAGGTCATGTTCTA
24555857 TAGCGG
1 TAGCGG
24555863 TATTTTTGTC
Statistics
Matches: 67, Mismatches: 9, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
35 28 0.42
36 1 0.01
38 2 0.03
40 2 0.03
42 1 0.01
43 33 0.49
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (43 bp):
TAGCGGCGTTTGTGATAAAAGTGTCGCTAAAGGTCATGTTCTA
Found at i:24555799 original size:35 final size:35
Alignment explanation
Indices: 24555749--24555819 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
24555739 CGGCGTTTGT
* *
24555749 GATAAAAGTGCCGCTAAAGGTCATGTTCTATAGCG
1 GATAAAAGCGCCGCTAAAGGTCATGCTCTATAGCG
* *
24555784 GATAAAAGCGTCGCTAAAGGTCATGCTCTTTAGCG
1 GATAAAAGCGCCGCTAAAGGTCATGCTCTATAGCG
24555819 G
1 G
24555820 CGTTTGTGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (35 bp):
GATAAAAGCGCCGCTAAAGGTCATGCTCTATAGCG
Found at i:24557436 original size:110 final size:109
Alignment explanation
Indices: 24557272--24557706 Score: 671
Period size: 110 Copynumber: 4.0 Consensus size: 109
24557262 AAGATTTAGG
* * *
24557272 AGGATATTTGGCTATCTGGTCGAACGAG--AAATCGAAACCCTGCACATTAGGGCACGTTTTCTC
1 AGGATATTTGCCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
*
24557335 GAATTTTCAAACGCAAAACATTGCCTTATTTTGAAAATTTTTAAA
66 GAATTTCCAAACGCAAAACATTGCCTTATTTTG-AAATTTTTAAA
*
24557380 AGGATACTTGCCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
1 AGGATATTTGCCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
* *
24557445 GAATTTCCAAATGCAAAACATTGCCTTATTTTGAAATTTTTGAA
66 GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTAAA
24557489 AGGATATTTGGCC-ATTTGGTCGAACGAGAAAAAATCGAAACCCAGCACATTAGGGCACGTTTTC
1 AGGATATTT-GCCTATTTGGTCGAACGAG-AAAAATCGAAACCCAGCACATTAGGGCACGTTTTC
24557553 TCGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTAAA
64 TCGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTAAA
* * *
24557599 AGGATATTTG-GTCATTTGGTTGAACGAGAAAAATCGAAACCCAGCATATTAGGGCACGTTTTTC
1 AGGATATTTGCCT-ATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACG-TTTTC
* * *
24557663 TCGAATTTCCAAACGCAAAATATTCCCTTATTTAGAAAATTTTT
64 TCGAATTTCCAAACGCAAAACATTGCCTTATTTTG-AAATTTTT
24557707 TCTTTTTGAA
Statistics
Matches: 303, Mismatches: 16, Indels: 13
0.91 0.05 0.04
Matches are distributed among these distances:
108 25 0.08
109 63 0.21
110 207 0.68
111 8 0.03
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (109 bp):
AGGATATTTGCCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTAAA
Found at i:24558354 original size:3 final size:3
Alignment explanation
Indices: 24558346--24558381 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
24558336 AAAATGAGCA
24558346 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
24558382 TTGAAAATAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:24558484 original size:12 final size:13
Alignment explanation
Indices: 24558458--24558486 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
24558448 ATATATAACA
24558458 AAAATAAACAAAT
1 AAAATAAACAAAT
24558471 AAAATAAA-AAAT
1 AAAATAAACAAAT
24558483 AAAA
1 AAAA
24558487 AGTAATCCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.14
Consensus pattern (13 bp):
AAAATAAACAAAT
Found at i:24563007 original size:2 final size:2
Alignment explanation
Indices: 24563002--24563026 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
24562992 CTAAACACAC
24563002 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
24563027 AAGACCTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:24570931 original size:26 final size:24
Alignment explanation
Indices: 24570902--24570961 Score: 66
Period size: 26 Copynumber: 2.4 Consensus size: 24
24570892 TAAACCAAAT
24570902 TTTTTAAAATCACTTCTCAAAAGTA
1 TTTTTAAAA-CACTTCTCAAAAGTA
* * *
24570927 CTTTTTCACAACACTTTTTAAAAGTA
1 -TTTTT-AAAACACTTCTCAAAAGTA
24570953 TTTTTAAAA
1 TTTTTAAAA
24570962 GCATTGTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
24 3 0.10
25 5 0.17
26 18 0.62
27 3 0.10
ACGTcount: A:0.38, C:0.15, G:0.03, T:0.43
Consensus pattern (24 bp):
TTTTTAAAACACTTCTCAAAAGTA
Found at i:24571098 original size:16 final size:16
Alignment explanation
Indices: 24571065--24571103 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
24571055 CTATTAATTT
*
24571065 TTTTATTTAATCACTA
1 TTTTATTTAATCAATA
24571081 TTTT-TTTAATCAAATA
1 TTTTATTTAATC-AATA
24571097 TTTTATT
1 TTTTATT
24571104 CACTTTCCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 7 0.35
16 11 0.55
17 2 0.10
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTTATTTAATCAATA
Found at i:24571500 original size:20 final size:20
Alignment explanation
Indices: 24571466--24571507 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
24571456 AACTATTTAA
** *
24571466 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
24571486 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
24571506 AT
1 AT
24571508 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:24576569 original size:21 final size:21
Alignment explanation
Indices: 24576543--24576585 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
24576533 CACTCCAGAT
24576543 ATGTCATGCTTGAGTTGTGAC
1 ATGTCATGCTTGAGTTGTGAC
24576564 ATGTCATGCTTGAGTTGTGAC
1 ATGTCATGCTTGAGTTGTGAC
24576585 A
1 A
24576586 AAGCCAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.21, C:0.14, G:0.28, T:0.37
Consensus pattern (21 bp):
ATGTCATGCTTGAGTTGTGAC
Found at i:24577163 original size:13 final size:13
Alignment explanation
Indices: 24577145--24577184 Score: 50
Period size: 11 Copynumber: 3.3 Consensus size: 13
24577135 CGGCCCGCCC
24577145 ATATTAATTTTTT
1 ATATTAATTTTTT
24577158 ATATT-A-TTTTT
1 ATATTAATTTTTT
*
24577169 ATA-TAATTTTTA
1 ATATTAATTTTTT
24577181 ATAT
1 ATAT
24577185 ATATAATACA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
10 1 0.04
11 9 0.39
12 8 0.35
13 5 0.22
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
ATATTAATTTTTT
Found at i:24577392 original size:11 final size:11
Alignment explanation
Indices: 24577359--24577399 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
24577349 ACAATAACCA
24577359 TAAAATAGTAG
1 TAAAATAGTAG
* *
24577370 TAACATAATAG
1 TAAAATAGTAG
*
24577381 TAAAATGGTAG
1 TAAAATAGTAG
24577392 TAAAATAG
1 TAAAATAG
24577400 GGAAAAAAAC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.54, C:0.02, G:0.17, T:0.27
Consensus pattern (11 bp):
TAAAATAGTAG
Found at i:24587508 original size:46 final size:46
Alignment explanation
Indices: 24587435--24587527 Score: 141
Period size: 46 Copynumber: 2.0 Consensus size: 46
24587425 TAGAGAAACT
* * * *
24587435 GAATCGGGTTGTATCATATAATTGAGTACTGGGTCAAAAAGGCCAA
1 GAATCGAGTTGGATCACATAATAGAGTACTGGGTCAAAAAGGCCAA
*
24587481 GAATCGAGTTGGATCACATAATAGAGTACTGGGTTAAAAAGGCCAA
1 GAATCGAGTTGGATCACATAATAGAGTACTGGGTCAAAAAGGCCAA
24587527 G
1 G
24587528 GAAGTACTCG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.24
Consensus pattern (46 bp):
GAATCGAGTTGGATCACATAATAGAGTACTGGGTCAAAAAGGCCAA
Found at i:24592096 original size:21 final size:21
Alignment explanation
Indices: 24592024--24592098 Score: 69
Period size: 21 Copynumber: 3.6 Consensus size: 21
24592014 TACGTTGTGG
*
24592024 TGTCGCGACATCCCTAGGTGA
1 TGTCGCGACATCCCTGGGTGA
* * * *
24592045 TATTGCAACATCCCTGGGTTA
1 TGTCGCGACATCCCTGGGTGA
* * * *
24592066 TTTTGTGACATTCCTGGGTGA
1 TGTCGCGACATCCCTGGGTGA
24592087 TGTCGCGACATC
1 TGTCGCGACATC
24592099 AAGAGAAGAT
Statistics
Matches: 40, Mismatches: 14, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.19, C:0.24, G:0.25, T:0.32
Consensus pattern (21 bp):
TGTCGCGACATCCCTGGGTGA
Found at i:24597154 original size:220 final size:218
Alignment explanation
Indices: 24596773--24597189 Score: 683
Period size: 220 Copynumber: 1.9 Consensus size: 218
24596763 AGAAAAAGGA
* * *
24596773 AAAAAAAATACAGAAACTATCAGAAATAGGAAAAAATTCCTTTTCTTGACTATCATAGTCTGTTT
1 AAAAAAAATACAGAAACTATCAGAAATAGGAAAAAATTACTTTTCTTGACTATCATACTCTCTTT
*
24596838 TATTTTGCTGTTAATTCATTTCAATTTCGTGTTCTTCGCGGTGATCTTGAGGTGGGTTTCTGGGT
66 TATTTTGCTATTAATTCATTTCAATTTCGTGTTCTTCGCGGTGATCTTGAGGTGGGTTTCTGGGT
* * *
24596903 TTTTTTTCATCAATGGAGATTATACCCAACATTTCAAAACTTTATTTTTTTTCTTTTAAAATTTC
131 TTTTTTTCATCAAAGGAGATTATACCCAACATTTCAAAACTCTA-TTTTTCTCTTTTAAAATTTC
24596968 TCTCTTTGAATTTATAAATTATGG
195 TCTCTTTGAATTTATAAATTATGG
* * * * *
24596992 AAAAAAATTACAGAAACTATTAGAAATAGGAAAAAAATTATTTTTCTTGACTATTATACTTTCTT
1 AAAAAAAATACAGAAACTATCAGAAATAGG-AAAAAATTACTTTTCTTGACTATCATACTCTCTT
24597057 TTATTTTGCTATTAATTCATTTCAATTTCGTGTTCTTCGCGGTGATCTTGAGGTGGGTTTCTAGG
65 TTATTTTGCTATTAATTCATTTCAATTTCGTGTTCTTCGCGGTGATCTTGAGGTGGGTTTCT-GG
*
24597122 TTTTTTTTTCATCAAAGGAGATTATA-CCAACATTTCAAAACTCTATTTTTCTCTTTTAAAATTT
129 GTTTTTTTTCATCAAAGGAGATTATACCCAACATTTCAAAACTCTATTTTTCTCTTTTAAAATTT
24597186 CTCT
194 CTCT
24597190 ATTTTTTCAT
Statistics
Matches: 183, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
219 50 0.27
220 107 0.58
221 26 0.14
ACGTcount: A:0.29, C:0.14, G:0.13, T:0.44
Consensus pattern (218 bp):
AAAAAAAATACAGAAACTATCAGAAATAGGAAAAAATTACTTTTCTTGACTATCATACTCTCTTT
TATTTTGCTATTAATTCATTTCAATTTCGTGTTCTTCGCGGTGATCTTGAGGTGGGTTTCTGGGT
TTTTTTTCATCAAAGGAGATTATACCCAACATTTCAAAACTCTATTTTTCTCTTTTAAAATTTCT
CTCTTTGAATTTATAAATTATGG
Found at i:24597899 original size:47 final size:47
Alignment explanation
Indices: 24597845--24597935 Score: 164
Period size: 47 Copynumber: 1.9 Consensus size: 47
24597835 ATTTAAGAGA
24597845 TTAAAAAGGAAAAATAAATCAAATTTGATTATGGGTAATTAGCTAGC
1 TTAAAAAGGAAAAATAAATCAAATTTGATTATGGGTAATTAGCTAGC
* *
24597892 TTAAAAAGGAAGAATAAATCAAATTTTATTATGGGTAATTAGCT
1 TTAAAAAGGAAAAATAAATCAAATTTGATTATGGGTAATTAGCT
24597936 CGCTCCGGTA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.46, C:0.05, G:0.16, T:0.32
Consensus pattern (47 bp):
TTAAAAAGGAAAAATAAATCAAATTTGATTATGGGTAATTAGCTAGC
Found at i:24607046 original size:21 final size:21
Alignment explanation
Indices: 24607020--24607063 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
24607010 CTAAGTTGGG
24607020 TCACATGACCAAGCCACACAC
1 TCACATGACCAAGCCACACAC
24607041 TCACATGACCAAGCCACACAC
1 TCACATGACCAAGCCACACAC
24607062 TC
1 TC
24607064 GTTTGCCAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.36, C:0.43, G:0.09, T:0.11
Consensus pattern (21 bp):
TCACATGACCAAGCCACACAC
Found at i:24608133 original size:35 final size:35
Alignment explanation
Indices: 24608093--24608208 Score: 169
Period size: 35 Copynumber: 3.3 Consensus size: 35
24608083 AATCACTCCA
24608093 AAACACACCAATGCTCATAAGAGCTAGTCCAACAG
1 AAACACACCAATGCTCATAAGAGCTAGTCCAACAG
* ** *
24608128 AAACACACCAATTCTCATAAGAGCTAGTCCCTCCG
1 AAACACACCAATGCTCATAAGAGCTAGTCCAACAG
* *
24608163 AAACACACCAATGCTCATAAGAGCTAGTCTAACTG
1 AAACACACCAATGCTCATAAGAGCTAGTCCAACAG
*
24608198 AAACATACCAA
1 AAACACACCAA
24608209 ACAGAGAATA
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 71 1.00
ACGTcount: A:0.41, C:0.29, G:0.12, T:0.17
Consensus pattern (35 bp):
AAACACACCAATGCTCATAAGAGCTAGTCCAACAG
Found at i:24610910 original size:16 final size:18
Alignment explanation
Indices: 24610881--24610916 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
24610871 GAATTAATTT
24610881 AAATAAATTAA-TTTCTC
1 AAATAAATTAATTTTCTC
24610898 AAATAAA-TAATTTTCTC
1 AAATAAATTAATTTTCTC
24610915 AA
1 AA
24610917 CCCAATTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 3 0.17
17 15 0.83
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (18 bp):
AAATAAATTAATTTTCTC
Found at i:24611180 original size:16 final size:18
Alignment explanation
Indices: 24611151--24611186 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
24611141 CAATTAATTT
24611151 AAATAAATTAA-TTTCTC
1 AAATAAATTAATTTTCTC
24611168 AAATAAA-TAATTTTCTC
1 AAATAAATTAATTTTCTC
24611185 AA
1 AA
24611187 CCCAATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 3 0.17
17 15 0.83
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (18 bp):
AAATAAATTAATTTTCTC
Found at i:24611235 original size:270 final size:270
Alignment explanation
Indices: 24610754--24611839 Score: 1886
Period size: 270 Copynumber: 4.0 Consensus size: 270
24610744 CATCCATTGT
*
24610754 ATTTTTTCTTGTACTGGATCCAATTATATGTACTTCTTGAACTTTAACCCAACACTCTATAATTT
1 ATTTTTTCTTGTACTGGATCCAATTATATGTACTTCTTGGACTTTAACCCAACACTCTATAATTT
* * * *
24610819 ATTTCAACCCAATACAAGTTTTTTCTATTTCCCAAATTAAATATTATTTGTTGAATTAATTTAAA
66 ATTCCAACCCAATACATGTTTTTTCTATTTCCCAAATTAAATATTATTTGCTCAATTAATTTAAA
24610884 TAAATTAATTTCTCAAATAAATAATTTTCTCAACCCAATTCTAATTCTGTTAAAATTATGACAAC
131 TAAATTAATTTCTCAAATAAATAATTTTCTCAACCCAATTCTAATTCTGTTAAAATTATGACAAC
*
24610949 TTTACCATAAAAGAATCTATGAGAAAATGTATTTAAATTTTTTTTACATTAAATTAGATTCACAA
196 TTTACCATAAAAGAATCTATGAGAAAATATATTTAAATTTTTTTTACATTAAATTAGATTCACAA
24611014 TAACCAATTA
261 TAACCAATTA
24611024 ATTTTTTCTTGTACTGGATCCAATTATATGTACTTCTTGGACTTTAACCCAACACTCTATAATTT
1 ATTTTTTCTTGTACTGGATCCAATTATATGTACTTCTTGGACTTTAACCCAACACTCTATAATTT
*
24611089 ATTCCAATCCAATACATGTTTTTTCTATTTCCCAAATTAAATATTATTTGCTCAATTAATTTAAA
66 ATTCCAACCCAATACATGTTTTTTCTATTTCCCAAATTAAATATTATTTGCTCAATTAATTTAAA
*
24611154 TAAATTAATTTCTCAAATAAATAATTTTCTCAACCCAATTTTAATTCTGTTAAAATTATGACAAC
131 TAAATTAATTTCTCAAATAAATAATTTTCTCAACCCAATTCTAATTCTGTTAAAATTATGACAAC
* *
24611219 TTTACTATAAAAGAATCTATGAGAAAATATATTTAAAATTTTTTTACATTAAATTAGATTCACAA
196 TTTACCATAAAAGAATCTATGAGAAAATATATTTAAATTTTTTTTACATTAAATTAGATTCACAA
*
24611284 TAACAAATTA
261 TAACCAATTA
* *
24611294 TTTTTTTCCTGTACTGGATCCAATTATATGTACTTCTTGGACTTTAACCCAACACTCTATAATTT
1 ATTTTTTCTTGTACTGGATCCAATTATATGTACTTCTTGGACTTTAACCCAACACTCTATAATTT
* *
24611359 ATTCCAATCCAATACATGTTTTTTCTATTTCCCAAATTAAATATTATTTGCGCAATTAATTTAAA
66 ATTCCAACCCAATACATGTTTTTTCTATTTCCCAAATTAAATATTATTTGCTCAATTAATTTAAA
*
24611424 TAAATTAATTTCTCAAATAAATAATTTTCTCAACCCAATTCTAATTCTATTAAAATTATGACAAC
131 TAAATTAATTTCTCAAATAAATAATTTTCTCAACCCAATTCTAATTCTGTTAAAATTATGACAAC
* * *
24611489 TTTACTATAAAAGAATCTATGAGAAAATATATTTAATTTTTTTTTACACTAAATTAGATTCACAA
196 TTTACCATAAAAGAATCTATGAGAAAATATATTTAAATTTTTTTTACATTAAATTAGATTCACAA
*
24611554 TAACTAATTA
261 TAACCAATTA
* *
24611564 ATTTTTTCTTGTACTGGATTCAATTATATGTACTTCTTAGACTTTAACCCAACACTCTATAATTT
1 ATTTTTTCTTGTACTGGATCCAATTATATGTACTTCTTGGACTTTAACCCAACACTCTATAATTT
* *
24611629 ATTCCAACCCAACACATGTTTTTTTTTCTATTTTCCAAATTAAATATTATTTGCTCAATTAATTT
66 ATTCCAACCCAATACATG---TTTTTTCTATTTCCCAAATTAAATATTATTTGCTCAATTAATTT
24611694 AAATAAATTAATTTCTCAAATAAATAATTTTCTCAACCCAATTCTAATTCTGTTAAAATTATGAC
128 AAATAAATTAATTTCTCAAATAAATAATTTTCTCAACCCAATTCTAATTCTGTTAAAATTATGAC
* * * *
24611759 AACATTACCATAAAAGAATCTATGAGAAAATATATTT-AATTTTTTCTACATTAAATTGGATTTA
193 AACTTTACCATAAAAGAATCTATGAGAAAATATATTTAAATTTTTTTTACATTAAATTAGATTCA
24611823 CAATAACCAATTA
258 CAATAACCAATTA
24611836 ATTT
1 ATTT
24611840 AAATCCATTT
Statistics
Matches: 776, Mismatches: 37, Indels: 4
0.95 0.05 0.00
Matches are distributed among these distances:
270 597 0.77
272 38 0.05
273 141 0.18
ACGTcount: A:0.37, C:0.15, G:0.05, T:0.42
Consensus pattern (270 bp):
ATTTTTTCTTGTACTGGATCCAATTATATGTACTTCTTGGACTTTAACCCAACACTCTATAATTT
ATTCCAACCCAATACATGTTTTTTCTATTTCCCAAATTAAATATTATTTGCTCAATTAATTTAAA
TAAATTAATTTCTCAAATAAATAATTTTCTCAACCCAATTCTAATTCTGTTAAAATTATGACAAC
TTTACCATAAAAGAATCTATGAGAAAATATATTTAAATTTTTTTTACATTAAATTAGATTCACAA
TAACCAATTA
Done.