Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 90 of 228
Found at i:26328167 original size:17 final size:17
Alignment explanation
Indices: 26328132--26328265 Score: 86
Period size: 17 Copynumber: 8.0 Consensus size: 17
26328122 TTATTATTAA
26328132 ATATAATTTAATAAAAAT
1 ATATAATTTAAT-AAAAT
26328150 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
*
26328167 ATATAAATTTACTAAAAT
1 ATAT-AATTTAATAAAAT
* * *
26328185 -CATAATAT-ATAATACT
1 ATATAATTTAATAA-AAT
*
26328201 ATA-AAGTATAATTTAAAAT
1 ATATAA-TTTAA--TAAAAT
* *
26328220 -TATTA-TT-AT-TAA-
1 ATATAATTTAATAAAAT
26328232 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
*
26328249 ATATAATTTGATAAAAT
1 ATATAATTTAATAAAAT
26328266 TCTTAGTATT
Statistics
Matches: 90, Mismatches: 13, Indels: 27
0.69 0.10 0.21
Matches are distributed among these distances:
13 6 0.07
14 3 0.03
15 5 0.06
16 11 0.12
17 32 0.36
18 27 0.30
19 3 0.03
20 3 0.03
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:26328214 original size:145 final size:145
Alignment explanation
Indices: 26327763--26328166 Score: 763
Period size: 145 Copynumber: 2.8 Consensus size: 145
26327753 ATGATTATTG
*
26327763 TTATTGTTATTAAATTTTAATAAGATTATTAATATTAGTAATAAATAATTTAATCATATTTTAAC
1 TTATTGTTATTAAATTTTAATAAGATTATTAATATAAGTAATAAATAATTTAATCATATTTTAAC
26327828 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATAT
66 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATAT
26327893 TGTTATATGAATTTA
131 TGTTATATGAATTTA
*
26327908 TTATTGTTATTAAATTTTAATAAGATTATTAATATCAGTAATAAATAATTTAATCATATTTTAAC
1 TTATTGTTATTAAATTTTAATAAGATTATTAATATAAGTAATAAATAATTTAATCATATTTTAAC
26327973 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATAT
66 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATAT
26328038 TGTTATATGAATTTA
131 TGTTATATGAATTTA
*
26328053 TTATTGTTATTAAATTTTAATAAGATTATTAATATAAATAATAAATAATTTAATCATATTTTAAC
1 TTATTGTTATTAAATTTTAATAAGATTATTAATATAAGTAATAAATAATTTAATCATATTTTAAC
* *
26328118 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAAT
66 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAAT
26328167 ATATAAATTT
Statistics
Matches: 254, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
145 254 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (145 bp):
TTATTGTTATTAAATTTTAATAAGATTATTAATATAAGTAATAAATAATTTAATCATATTTTAAC
ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATAT
TGTTATATGAATTTA
Found at i:26335799 original size:13 final size:13
Alignment explanation
Indices: 26335764--26335818 Score: 51
Period size: 13 Copynumber: 4.2 Consensus size: 13
26335754 TCAATCAAAA
*
26335764 AAAATAAAAAATT
1 AAAATAAAAAATC
*
26335777 AAAAT-CAAAATC
1 AAAATAAAAAATC
26335789 AAAATAAAAAA-C
1 AAAATAAAAAATC
*
26335801 AAAAAGAAAAAAATC
1 -AAAA-TAAAAAATC
26335816 AAA
1 AAA
26335819 GTCAAAAGCA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
12 11 0.32
13 13 0.38
14 9 0.26
15 1 0.03
ACGTcount: A:0.78, C:0.07, G:0.02, T:0.13
Consensus pattern (13 bp):
AAAATAAAAAATC
Found at i:26335847 original size:29 final size:27
Alignment explanation
Indices: 26335783--26335854 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
26335773 AATTAAAATC
* *
26335783 AAAATCAAAATAAAAAACAAAAAGAAA
1 AAAATCAAAGTCAAAAACAAAAAGAAA
*
26335810 AAAATCAAAGTCAAAAGCAAAAAGAGAA
1 AAAATCAAAGTCAAAAACAAAAAGA-AA
*
26335838 ATCAATCAAAGTCAAAA
1 A-AAATCAAAGTCAAAA
26335855 TAAAATATGA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 22 0.56
28 3 0.08
29 14 0.36
ACGTcount: A:0.71, C:0.11, G:0.08, T:0.10
Consensus pattern (27 bp):
AAAATCAAAGTCAAAAACAAAAAGAAA
Found at i:26336268 original size:15 final size:15
Alignment explanation
Indices: 26336233--26336280 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
26336223 ATGGATTTAA
26336233 AAAAAAGATGAAAAAT
1 AAAAAA-ATGAAAAAT
*
26336249 --GAAAATGAAAAAT
1 AAAAAAATGAAAAAT
*
26336262 AAAAAAATGAAAAGT
1 AAAAAAATGAAAAAT
26336277 AAAA
1 AAAA
26336281 TGGAGAGGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
13 9 0.33
14 3 0.11
15 15 0.56
ACGTcount: A:0.75, C:0.00, G:0.12, T:0.12
Consensus pattern (15 bp):
AAAAAAATGAAAAAT
Found at i:26337614 original size:87 final size:87
Alignment explanation
Indices: 26337462--26337814 Score: 517
Period size: 87 Copynumber: 4.1 Consensus size: 87
26337452 AGATTAGTGA
* * * *
26337462 AGATCGAAAACAAAGCCTTGCCTCTATCGGTTGCAGTAGAGCTAGTTAAAGATAGCAGATTTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
26337527 CTTCCTGCATTAACAGCGAAGC
66 CTTCCTGCATTAACAGCGAAGC
*
26337549 AGATTGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
26337614 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCATTAACAGCGAAGC
* * * *
26337636 AGATCAAAAACAAAACCTTGCCTCCATCGGTTGCAGTGAAGCTGGTTAAAGATAGCAGATTTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
26337701 CTTCCTGCATTAACAACGAAGC
66 CTTCCTGCATTAACAGCGAAGC
* * * * *
26337723 AGATCGAAAACAAAGCCTTACCTCCATCGGTTACGGTGGAGCTGGTTAAGGATAGCATATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* * ** *
26337788 CCTCCTGCGTCGACAGTGAAGC
66 CTTCCTGCATTAACAGCGAAGC
26337810 AGATC
1 AGATC
26337815 AAAGATTACA
Statistics
Matches: 238, Mismatches: 28, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 238 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (87 bp):
AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
CTTCCTGCATTAACAGCGAAGC
Found at i:26341918 original size:29 final size:31
Alignment explanation
Indices: 26341860--26341920 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 31
26341850 CAAAATGATT
26341860 ATTGAACTATTTAAAAGTTTTCATTTAAGTC
1 ATTGAACTATTTAAAAGTTTTCATTTAAGTC
*
26341891 ATTGAACT-TTTCAAAGTTTT-ATTTAAGTC
1 ATTGAACTATTTAAAAGTTTTCATTTAAGTC
26341920 A
1 A
26341921 CATGGTTGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 10 0.34
30 11 0.38
31 8 0.28
ACGTcount: A:0.34, C:0.10, G:0.10, T:0.46
Consensus pattern (31 bp):
ATTGAACTATTTAAAAGTTTTCATTTAAGTC
Found at i:26344980 original size:15 final size:15
Alignment explanation
Indices: 26344960--26344989 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26344950 AAAAAGAGAG
26344960 AAAAATTAAAATAAA
1 AAAAATTAAAATAAA
*
26344975 AAAAATTAAATTAAA
1 AAAAATTAAAATAAA
26344990 CCAAAAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
AAAAATTAAAATAAA
Found at i:26345761 original size:15 final size:15
Alignment explanation
Indices: 26345741--26345770 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26345731 AAAGAGAGAG
26345741 AAAAATTAAAATAAA
1 AAAAATTAAAATAAA
*
26345756 AAAAATTAAATTAAA
1 AAAAATTAAAATAAA
26345771 CCAAAAAGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
AAAAATTAAAATAAA
Found at i:26351891 original size:21 final size:21
Alignment explanation
Indices: 26351865--26351909 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
26351855 CTGGGCACAT
26351865 GCCCGTATGATTGAGGGACAC
1 GCCCGTATGATTGAGGGACAC
* *
26351886 GCCCGTGTGGTTGAGGGACAC
1 GCCCGTATGATTGAGGGACAC
26351907 GCC
1 GCC
26351910 TGTTTGAGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.38, T:0.18
Consensus pattern (21 bp):
GCCCGTATGATTGAGGGACAC
Found at i:26352031 original size:21 final size:21
Alignment explanation
Indices: 26352007--26352091 Score: 134
Period size: 21 Copynumber: 4.0 Consensus size: 21
26351997 GATACACACT
*
26352007 CGTGTGGACAAGACACATGCC
1 CGTGTGGCCAAGACACATGCC
26352028 CGTGTGGCCAAGACACATGCC
1 CGTGTGGCCAAGACACATGCC
* *
26352049 CGTGTGGCCAAGACACACGCT
1 CGTGTGGCCAAGACACATGCC
*
26352070 CGTGTGGCTAAGACACATGCC
1 CGTGTGGCCAAGACACATGCC
26352091 C
1 C
26352092 ATATGTACAA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 58 1.00
ACGTcount: A:0.25, C:0.32, G:0.28, T:0.15
Consensus pattern (21 bp):
CGTGTGGCCAAGACACATGCC
Found at i:26352040 original size:63 final size:63
Alignment explanation
Indices: 26351969--26352091 Score: 169
Period size: 63 Copynumber: 2.0 Consensus size: 63
26351959 CACGATTGTA
* * *
26351969 TGGCCAAGACACACGCCTGTGTGG-TAAGGATACACACTCGTGTGGAC-AAGACACATGCCCGTG
1 TGGCCAAGACACACGCCCGTGTGGCCAA-GACACACACTCGTGTGG-CTAAGACACATGCCCGTG
* *
26352032 TGGCCAAGACACATGCCCGTGTGGCCAAGACACACGCTCGTGTGGCTAAGACACATGCCC
1 TGGCCAAGACACACGCCCGTGTGGCCAAGACACACACTCGTGTGGCTAAGACACATGCCC
26352092 ATATGTACAA
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
62 1 0.02
63 50 0.94
64 2 0.04
ACGTcount: A:0.26, C:0.30, G:0.28, T:0.16
Consensus pattern (63 bp):
TGGCCAAGACACACGCCCGTGTGGCCAAGACACACACTCGTGTGGCTAAGACACATGCCCGTG
Found at i:26354671 original size:36 final size:35
Alignment explanation
Indices: 26354631--26354700 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
26354621 TGTGAAAGAG
* **
26354631 AATATATATGTATGTTATTCATGTCATGTGACAGTA
1 AATATATAGGTATGTT-TTCATACCATGTGACAGTA
* *
26354667 AATATGTGGGTATGTTTTCATACCATGTGACAGT
1 AATATATAGGTATGTTTTCATACCATGTGACAGT
26354701 GATTATAATG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
35 16 0.55
36 13 0.45
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (35 bp):
AATATATAGGTATGTTTTCATACCATGTGACAGTA
Found at i:26357426 original size:6 final size:6
Alignment explanation
Indices: 26357417--26357445 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
26357407 TATTTTGTTT
26357417 AATATA AATATA AATATA AATATA AATAT
1 AATATA AATATA AATATA AATATA AATAT
26357446 TTCATTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
AATATA
Found at i:26357741 original size:20 final size:20
Alignment explanation
Indices: 26357692--26357745 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
26357682 TCTTTTTATT
**
26357692 TTTATGTATTTTTAAATTTA
1 TTTATGTATTTTTAAAAATA
*
26357712 -TTATTATATTTTTAAAAATA
1 TTTA-TGTATTTTTAAAAATA
26357732 TTTATGTATTTTTA
1 TTTATGTATTTTTA
26357746 TATATTTCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.11
20 22 0.79
21 3 0.11
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (20 bp):
TTTATGTATTTTTAAAAATA
Found at i:26357745 original size:10 final size:10
Alignment explanation
Indices: 26357688--26357752 Score: 53
Period size: 10 Copynumber: 6.5 Consensus size: 10
26357678 ATAATCTTTT
*
26357688 TATTTTTATG
1 TATTTTTATA
26357698 TATTTTTA-A
1 TATTTTTATA
26357707 -ATTTATTATTA
1 TATTT-TTA-TA
*
26357718 TATTTTTAAA
1 TATTTTTATA
* * *
26357728 AATATTTATG
1 TATTTTTATA
26357738 TATTTTTATA
1 TATTTTTATA
26357748 TATTT
1 TATTT
26357753 CTTTAAATTT
Statistics
Matches: 42, Mismatches: 9, Indels: 8
0.71 0.15 0.14
Matches are distributed among these distances:
8 4 0.10
9 3 0.07
10 27 0.64
11 4 0.10
12 4 0.10
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (10 bp):
TATTTTTATA
Found at i:26358180 original size:15 final size:17
Alignment explanation
Indices: 26358160--26358198 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
26358150 AATGTTCTTC
*
26358160 ATATTAATTTTTTTTGA
1 ATATGAATTTTTTTTGA
26358177 ATTATGAATTTTTTTTGA
1 A-TATGAATTTTTTTTGA
26358195 ATAT
1 ATAT
26358199 TTTTATAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (17 bp):
ATATGAATTTTTTTTGA
Found at i:26362015 original size:15 final size:15
Alignment explanation
Indices: 26361995--26362025 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
26361985 ACCTTAATAC
26361995 AAATGAATGAACACG
1 AAATGAATGAACACG
26362010 AAATGAATGAACACG
1 AAATGAATGAACACG
26362025 A
1 A
26362026 CTATCCAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.13, G:0.19, T:0.13
Consensus pattern (15 bp):
AAATGAATGAACACG
Found at i:26367378 original size:28 final size:26
Alignment explanation
Indices: 26367350--26367415 Score: 75
Period size: 25 Copynumber: 2.5 Consensus size: 26
26367340 TTATAGTAAT
26367350 TTTTTTATTAAATATAATAATTGATAA
1 TTTTTTATTAAA-ATAATAATTGATAA
*
26367377 --TTTTATCTAAAATAATAATTGACAA
1 TTTTTTAT-TAAAATAATAATTGATAA
26367402 TTATTTT-TTAAAAT
1 TT-TTTTATTAAAAT
26367416 TGAATGTGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
25 19 0.56
26 10 0.29
27 1 0.03
28 4 0.12
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (26 bp):
TTTTTTATTAAAATAATAATTGATAA
Found at i:26367391 original size:25 final size:25
Alignment explanation
Indices: 26367352--26367403 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
26367342 ATAGTAATTT
*
26367352 TTTTATTAAATATAATAATTGATAA
1 TTTTATTAAATATAATAATTGACAA
26367377 TTTTATCTAAA-ATAATAATTGACAA
1 TTTTAT-TAAATATAATAATTGACAA
26367402 TT
1 TT
26367404 ATTTTTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (25 bp):
TTTTATTAAATATAATAATTGACAA
Found at i:26369410 original size:23 final size:23
Alignment explanation
Indices: 26369367--26369410 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
26369357 TTTACTTAGA
26369367 TTTTTATGTTCTTTTCAAAATAG
1 TTTTTATGTTCTTTTCAAAATAG
*
26369390 TTTTTAT-TTCTTGTTCTAAAT
1 TTTTTATGTTCTT-TTCAAAAT
26369411 TGGATTCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.23, C:0.09, G:0.07, T:0.61
Consensus pattern (23 bp):
TTTTTATGTTCTTTTCAAAATAG
Found at i:26376510 original size:17 final size:17
Alignment explanation
Indices: 26376488--26376536 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 17
26376478 AAATCTTAGA
*
26376488 TTTTGATACCCATATGT
1 TTTTGATACCCATATCT
*
26376505 TTTTGATACCTATATCT
1 TTTTGATACCCATATCT
* *
26376522 TTCTGATACTCATAT
1 TTTTGATACCCATAT
26376537 ATTTGACTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.24, C:0.18, G:0.08, T:0.49
Consensus pattern (17 bp):
TTTTGATACCCATATCT
Found at i:26378391 original size:3 final size:3
Alignment explanation
Indices: 26378383--26378442 Score: 102
Period size: 3 Copynumber: 20.0 Consensus size: 3
26378373 GATCAAGAAC
* *
26378383 AAT AAT AAT AAC AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
26378431 AAT AAT AAT AAT
1 AAT AAT AAT AAT
26378443 GAAAAGATAA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:26378644 original size:22 final size:22
Alignment explanation
Indices: 26378619--26378661 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
26378609 AAATTATAAA
*
26378619 ATATAA-AAATATATATATGTAC
1 ATATAAGAAAAATATA-ATGTAC
26378641 ATATAAGAAAAATATAATGTA
1 ATATAAGAAAAATATAATGTA
26378662 TGTGAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.58, C:0.02, G:0.07, T:0.33
Consensus pattern (22 bp):
ATATAAGAAAAATATAATGTAC
Found at i:26378663 original size:26 final size:25
Alignment explanation
Indices: 26378623--26378680 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
26378613 TATAAAATAT
26378623 AAAAATATATATATGT-ACA-TATAA
1 AAAAATATATATATGTGA-ATTATAA
*
26378647 GAAAAATATAATGTATGTGAATTATAA
1 -AAAAATAT-ATATATGTGAATTATAA
26378674 AAAAATA
1 AAAAATA
26378681 AAAAATATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 8 0.28
26 15 0.52
27 6 0.21
ACGTcount: A:0.59, C:0.02, G:0.09, T:0.31
Consensus pattern (25 bp):
AAAAATATATATATGTGAATTATAA
Found at i:26386187 original size:29 final size:29
Alignment explanation
Indices: 26386109--26386253 Score: 141
Period size: 29 Copynumber: 5.0 Consensus size: 29
26386099 TGTGCTAAAT
* * * *
26386109 GATGGTTGTAACCATCCCTTTTCTTTAATC
1 GATGGTCGAAACCATCCCTTTTC-ATATTC
* * *
26386139 AATGGTCAAAACCATTCCTTTTCATATTC
1 GATGGTCGAAACCATCCCTTTTCATATTC
*
26386168 GATGGTCGAAATCATCCCTTTTCATATTC
1 GATGGTCGAAACCATCCCTTTTCATATTC
* * *
26386197 GATGGTC-ATCACTAT-CCTTGTTCATATTT
1 GATGGTCGA-AACCATCCCTT-TTCATATTC
*
26386226 GATGATCGAAACCATCCCTTTTCATATT
1 GATGGTCGAAACCATCCCTTTTCATATT
26386254 AGAGGGTTGT
Statistics
Matches: 93, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
28 5 0.05
29 65 0.70
30 23 0.25
ACGTcount: A:0.25, C:0.23, G:0.12, T:0.40
Consensus pattern (29 bp):
GATGGTCGAAACCATCCCTTTTCATATTC
Found at i:26387285 original size:16 final size:16
Alignment explanation
Indices: 26387264--26387317 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
26387254 GTGTGATATG
26387264 AGTTTTAATAGTAGTT
1 AGTTTTAATAGTAGTT
26387280 AGTTTT--TAGT-GATAT
1 AGTTTTAATAGTAG-T-T
26387295 GAGTTTTAATAGTAGTT
1 -AGTTTTAATAGTAGTT
26387312 AGTTTT
1 AGTTTT
26387318 TGGAAATTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 1 0.03
14 5 0.16
15 1 0.03
16 18 0.56
17 1 0.03
18 5 0.16
19 1 0.03
ACGTcount: A:0.28, C:0.00, G:0.20, T:0.52
Consensus pattern (16 bp):
AGTTTTAATAGTAGTT
Found at i:26387292 original size:32 final size:32
Alignment explanation
Indices: 26387256--26387318 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
26387246 TATCACTAGT
26387256 GTGATATGAGTTTTAATAGTAGTTAGTTTTTA
1 GTGATATGAGTTTTAATAGTAGTTAGTTTTTA
26387288 GTGATATGAGTTTTAATAGTAGTTAGTTTTT
1 GTGATATGAGTTTTAATAGTAGTTAGTTTTT
26387319 GGAAATTGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (32 bp):
GTGATATGAGTTTTAATAGTAGTTAGTTTTTA
Found at i:26388265 original size:9 final size:9
Alignment explanation
Indices: 26388251--26388290 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
26388241 AAGTTTAACT
26388251 CTTAATTAA
1 CTTAATTAA
26388260 CTTAATTAA
1 CTTAATTAA
26388269 C-TAA-TAA
1 CTTAATTAA
26388276 -TTAATTAA
1 CTTAATTAA
26388284 CATTAAT
1 C-TTAAT
26388291 CTTAATTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
7 6 0.22
8 6 0.22
9 10 0.37
10 5 0.19
ACGTcount: A:0.47, C:0.10, G:0.00, T:0.42
Consensus pattern (9 bp):
CTTAATTAA
Found at i:26388270 original size:20 final size:21
Alignment explanation
Indices: 26388245--26388300 Score: 64
Period size: 20 Copynumber: 2.8 Consensus size: 21
26388235 TATACTAAGT
26388245 TTAACTCTTAATTAACTT-A-A
1 TTAACTCTTAATTAA-TTAACA
**
26388265 TTAACTAATAATTAATTAACA
1 TTAACTCTTAATTAATTAACA
26388286 TTAA-TCTTAATTAAT
1 TTAACTCTTAATTAAT
26388301 CAATTTGGGG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
19 2 0.07
20 23 0.77
21 5 0.17
ACGTcount: A:0.45, C:0.11, G:0.00, T:0.45
Consensus pattern (21 bp):
TTAACTCTTAATTAATTAACA
Found at i:26389376 original size:42 final size:43
Alignment explanation
Indices: 26389278--26389461 Score: 216
Period size: 40 Copynumber: 4.3 Consensus size: 43
26389268 GCGTTTACAG
*
26389278 AAAAAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGC-TT--A
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTAAA
*
26389318 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCTGCGC-TTAAA
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTAAA
* * *
26389360 AAAAAACGCCGCTAAAGATCATGTTCTTTAGTGGCGCTTTCAT
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTAAA
* * * * *
26389403 CACAAACGTCGCTAAA-AGTAATGTTCTTTAGCGGCGCTTTTATA
1 AAAAAACGCCGCTAAAGA-TCATGTTCTTTAGCGGCGC-TTTAAA
*
26389447 AAAAAACGCCACTAA
1 AAAAAACGCCGCTAA
26389462 TTTTGGAATT
Statistics
Matches: 121, Mismatches: 18, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
40 37 0.31
42 37 0.31
43 33 0.27
44 14 0.12
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.27
Consensus pattern (43 bp):
AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTAAA
Found at i:26389871 original size:21 final size:21
Alignment explanation
Indices: 26389845--26389898 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
26389835 ACTTCTCTTA
26389845 CTGCTTCT-TGCGCTGCAACCT
1 CTGCTTCTCT-CGCTGCAACCT
*
26389866 CTGCTTCTCTCGCTGCAGCCT
1 CTGCTTCTCTCGCTGCAACCT
*
26389887 CTGCTTCCCTCG
1 CTGCTTCTCTCG
26389899 TTGTCGCCTC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 29 0.97
22 1 0.03
ACGTcount: A:0.06, C:0.43, G:0.19, T:0.33
Consensus pattern (21 bp):
CTGCTTCTCTCGCTGCAACCT
Found at i:26389907 original size:21 final size:21
Alignment explanation
Indices: 26389855--26389913 Score: 75
Period size: 21 Copynumber: 2.8 Consensus size: 21
26389845 CTGCTTCTTG
* *
26389855 CGCTGCAACCTCTGCTTCTCT
1 CGCTGCAGCCTCTGCTTCCCT
26389876 CGCTGCAGCCTCTGCTTCCCT
1 CGCTGCAGCCTCTGCTTCCCT
*
26389897 CGTTGTC-GCCTCTGCTT
1 CGCTG-CAGCCTCTGCTT
26389914 TAAGTTTTAG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
21 33 0.97
22 1 0.03
ACGTcount: A:0.05, C:0.42, G:0.19, T:0.34
Consensus pattern (21 bp):
CGCTGCAGCCTCTGCTTCCCT
Found at i:26395437 original size:9 final size:9
Alignment explanation
Indices: 26395420--26395720 Score: 247
Period size: 9 Copynumber: 34.3 Consensus size: 9
26395410 TATGTATTAA
*
26395420 GTAAATTAT
1 GTAAGTTAT
26395429 GTAAGTTAT
1 GTAAGTTAT
26395438 GTACA-TGTAT
1 GTA-AGT-TAT
26395448 GT-A-TTAT
1 GTAAGTTAT
26395455 GTAAGTTAT
1 GTAAGTTAT
*
26395464 GT-A-TTAA
1 GTAAGTTAT
*
26395471 GTAAGCTAT
1 GTAAGTTAT
*
26395480 GTAAGTTGT
1 GTAAGTTAT
26395489 GT-A-TTAT
1 GTAAGTTAT
26395496 GTAAGTTAT
1 GTAAGTTAT
26395505 GTAAGTTAT
1 GTAAGTTAT
** *
26395514 CAAAGTAAT
1 GTAAGTTAT
*
26395523 GTATGTTAT
1 GTAAGTTAT
26395532 GTAAG-T-T
1 GTAAGTTAT
26395539 GTAAGTTAT
1 GTAAGTTAT
*
26395548 -TATGTATTAT
1 GTAAG--TTAT
26395558 GTAAGTTAT
1 GTAAGTTAT
26395567 GTAAGTTAAAT
1 GTAAGTT--AT
*
26395578 -TTA-TTAT
1 GTAAGTTAT
*
26395585 GTAGGTTAT
1 GTAAGTTAT
*
26395594 GTAAGTTGT
1 GTAAGTTAT
*
26395603 GTAAGATAT
1 GTAAGTTAT
*
26395612 TTAAGTTAT
1 GTAAGTTAT
*
26395621 GTAAGTTTT
1 GTAAGTTAT
26395630 GT-A-TTAT
1 GTAAGTTAT
26395637 GTAAGTTAT
1 GTAAGTTAT
26395646 GTAAGTTAT
1 GTAAGTTAT
26395655 GTAAGTTAAAT
1 GTAAGTT--AT
26395666 GT-A-TTAT
1 GTAAGTTAT
*
26395673 GTAGGTTAT
1 GTAAGTTAT
*
26395682 GTAAGTTGT
1 GTAAGTTAT
*
26395691 GTAAGATAT
1 GTAAGTTAT
*
26395700 TTAAGTTAT
1 GTAAGTTAT
26395709 GTAAGTTAT
1 GTAAGTTAT
26395718 GTA
1 GTA
26395721 TACATAATTA
Statistics
Matches: 232, Mismatches: 37, Indels: 46
0.74 0.12 0.15
Matches are distributed among these distances:
7 32 0.14
8 15 0.06
9 163 0.70
10 13 0.06
11 9 0.04
ACGTcount: A:0.33, C:0.01, G:0.21, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:26395440 original size:25 final size:25
Alignment explanation
Indices: 26395409--26395513 Score: 115
Period size: 25 Copynumber: 4.2 Consensus size: 25
26395399 TAATATATAT
26395409 TTATGTATTAAGTAAATTATGTAAG
1 TTATGTATTAAGTAAATTATGTAAG
*
26395434 TTATGTACATGTATGT--ATTATGTAAG
1 TTATGT--AT-TAAGTAAATTATGTAAG
**
26395460 TTATGTATTAAGTAAGCTATGTAAG
1 TTATGTATTAAGTAAATTATGTAAG
* * *
26395485 TTGTGTATTATGTAAGTTATGTAAG
1 TTATGTATTAAGTAAATTATGTAAG
26395510 TTAT
1 TTAT
26395514 CAAAGTAATG
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
23 4 0.06
24 2 0.03
25 39 0.58
26 16 0.24
27 2 0.03
28 4 0.06
ACGTcount: A:0.33, C:0.02, G:0.19, T:0.46
Consensus pattern (25 bp):
TTATGTATTAAGTAAATTATGTAAG
Found at i:26395475 original size:16 final size:16
Alignment explanation
Indices: 26395409--26395482 Score: 69
Period size: 16 Copynumber: 4.4 Consensus size: 16
26395399 TAATATATAT
*
26395409 TTATGTATTAAGTAAA
1 TTATGTATTAAGTAAG
*
26395425 TTATGTAAGTTATGTACA-
1 TTATGT-A-TTAAGTA-AG
*
26395443 TGTATGTATTATGTAAG
1 T-TATGTATTAAGTAAG
26395460 TTATGTATTAAGTAAG
1 TTATGTATTAAGTAAG
*
26395476 CTATGTA
1 TTATGTA
26395483 AGTTGTGTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
16 27 0.54
17 9 0.18
18 8 0.16
19 6 0.12
ACGTcount: A:0.35, C:0.03, G:0.18, T:0.45
Consensus pattern (16 bp):
TTATGTATTAAGTAAG
Found at i:26395552 original size:19 final size:19
Alignment explanation
Indices: 26395528--26395566 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
26395518 GTAATGTATG
26395528 TTATGTAAGT-TGTAAGTTA
1 TTATGT-AGTATGTAAGTTA
*
26395547 TTATGTATTATGTAAGTTA
1 TTATGTAGTATGTAAGTTA
26395566 T
1 T
26395567 GTAAGTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (19 bp):
TTATGTAGTATGTAAGTTA
Found at i:26397276 original size:37 final size:37
Alignment explanation
Indices: 26397235--26397315 Score: 101
Period size: 39 Copynumber: 2.1 Consensus size: 37
26397225 AGCAAACATT
* *
26397235 TAAAACATA-ATTGCGGCGTTTACCAAAAAAATGCCAC
1 TAAAACATACATTGCGGCGTTTAAC-AAAAAACGCCAC
*
26397272 TAAAACATACCTATTGCGGCGTTTAACGAAAAACGCCAC
1 TAAAACATA-C-ATTGCGGCGTTTAACAAAAAACGCCAC
26397311 TAAAA
1 TAAAA
26397316 ACGCAAACAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
37 9 0.24
39 15 0.39
40 14 0.37
ACGTcount: A:0.43, C:0.22, G:0.14, T:0.21
Consensus pattern (37 bp):
TAAAACATACATTGCGGCGTTTAACAAAAAACGCCAC
Found at i:26397482 original size:114 final size:114
Alignment explanation
Indices: 26397213--26397506 Score: 313
Period size: 115 Copynumber: 2.6 Consensus size: 114
26397203 GAAGATAAAT
* * * * * *
26397213 ACGACACCGTTTAGCAAACATTTAAAACATAATTGCGGCGTTTACCAAAAAAATGCCACTAAAAC
1 ACGACAGCGTTTAGCAAAGACTTAAAACATAATTGCGGCGTTTATC-AAAAAACGCCACAAAAAC
** **
26397278 ATACCTATTGCGGCGTTTAACGAAAAACGCCACTAAAAACGCAAACAAAA
65 ATAAATATTGCGGCGCATAACGAAAAACGCCACTAAAAACGCAAACAAAA
** ** *
26397328 ACGATTGCGTTTAGCGCAGACTTAAAACATAACTGCGGCGTTTATCATAAAAACGCCACAAAAAC
1 ACGACAGCGTTTAGCAAAGACTTAAAACATAATTGCGGCGTTTATCA-AAAAACGCCACAAAAAC
* * * ***
26397393 CTAAATTTTGCGGCGCATAA-GAAAAAACGCCACT-ACAACGCAATTTAAA
65 ATAAATATTGCGGCGCATAACG-AAAAACGCCACTAAAAACGCAAACAAAA
* * * *
26397442 ACGACAGTGTTTAGCAAAGACTTAAAACATAATTGTGGCGTTTATGAAGAAACGCCACTAAAAAC
1 ACGACAGCGTTTAGCAAAGACTTAAAACATAATTGCGGCGTTTATCAAAAAACGCCAC-AAAAAC
26397507 GGAAATTAAA
Statistics
Matches: 146, Mismatches: 30, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
113 10 0.07
114 58 0.40
115 78 0.53
ACGTcount: A:0.42, C:0.22, G:0.15, T:0.21
Consensus pattern (114 bp):
ACGACAGCGTTTAGCAAAGACTTAAAACATAATTGCGGCGTTTATCAAAAAACGCCACAAAAACA
TAAATATTGCGGCGCATAACGAAAAACGCCACTAAAAACGCAAACAAAA
Found at i:26397814 original size:103 final size:103
Alignment explanation
Indices: 26397666--26397878 Score: 399
Period size: 103 Copynumber: 2.1 Consensus size: 103
26397656 TTACCATAAT
26397666 CCTAAACCCTAAAATATAAAATTTAAACCCTAAACCATATACCCTCTTAACCCATATACCCTATG
1 CCTAAACCCTAAAATATAAAATTTAAACCCTAAACCATATACCCTCTTAACCCATATACCCTATG
* *
26397731 CCCATATTAATCCTTAAACTCTAAGCTACTATCTAAAC
66 CCCATATTAATCCCTAAACTCTAAGCTACTAGCTAAAC
*
26397769 CCTAAACCCTAAAATATAAAATTTAAACCCTAAACCATATGCCCTCTTAACCCATATACCCTATG
1 CCTAAACCCTAAAATATAAAATTTAAACCCTAAACCATATACCCTCTTAACCCATATACCCTATG
26397834 CCCATATTAATCCCTAAACTCTAAGCTACTAGCTAAAC
66 CCCATATTAATCCCTAAACTCTAAGCTACTAGCTAAAC
26397872 CCTAAAC
1 CCTAAAC
26397879 AATAAACAAT
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 107 1.00
ACGTcount: A:0.39, C:0.31, G:0.03, T:0.27
Consensus pattern (103 bp):
CCTAAACCCTAAAATATAAAATTTAAACCCTAAACCATATACCCTCTTAACCCATATACCCTATG
CCCATATTAATCCCTAAACTCTAAGCTACTAGCTAAAC
Found at i:26397876 original size:7 final size:7
Alignment explanation
Indices: 26397866--26398067 Score: 74
Period size: 7 Copynumber: 29.0 Consensus size: 7
26397856 AAGCTACTAG
26397866 CTAAACC
1 CTAAACC
*
26397873 CTAAACA
1 CTAAACC
* *
26397880 ATAAACA
1 CTAAACC
* *
26397887 ATAAACA
1 CTAAACC
26397894 CTAAACC
1 CTAAACC
*
26397901 ATAAACC
1 CTAAACC
*
26397908 C-ACACC
1 CTAAACC
*
26397914 CTACACC
1 CTAAACC
26397921 CTAAACC
1 CTAAACC
* *
26397928 ATAAACA
1 CTAAACC
*
26397935 CTAAATC
1 CTAAACC
* *
26397942 ATAAACTG
1 CTAAAC-C
* *
26397950 C-ATACT
1 CTAAACC
*
26397956 TTAAACC
1 CTAAACC
*
26397963 ATAAA-C
1 CTAAACC
*
26397969 CTACACC
1 CTAAACC
*
26397976 CTAAATC
1 CTAAACC
* *
26397983 GTAAACA
1 CTAAACC
*
26397990 CTAAACT
1 CTAAACC
*
26397997 GTAAA-C
1 CTAAACC
*
26398003 CAATAACC
1 CTA-AACC
26398011 CTTAAACC
1 C-TAAACC
*
26398019 CT-AAGC
1 CTAAACC
*
26398025 CGATAA-C
1 CTA-AACC
26398032 CTAAACC
1 CTAAACC
26398039 CTTAAACC
1 C-TAAACC
26398047 CTAAACC
1 CTAAACC
26398054 CTAAACC
1 CTAAACC
*
26398061 TTAAACC
1 CTAAACC
26398068 TATAAAGCAC
Statistics
Matches: 143, Mismatches: 41, Indels: 22
0.69 0.20 0.11
Matches are distributed among these distances:
6 16 0.11
7 110 0.77
8 16 0.11
9 1 0.01
ACGTcount: A:0.47, C:0.33, G:0.02, T:0.18
Consensus pattern (7 bp):
CTAAACC
Found at i:26397906 original size:103 final size:103
Alignment explanation
Indices: 26397666--26397907 Score: 362
Period size: 103 Copynumber: 2.3 Consensus size: 103
26397656 TTACCATAAT
** *
26397666 CCTAAACCCTAAAATATAAAATTTAAACCCTAAACCATATACCCTCTTAACCCATATACCCTATG
1 CCTAAACAATAAAATATAAAATCTAAACCCTAAACCATATACCCTCTTAACCCATATACCCTATG
* *
26397731 CCCATATTAATCCTTAAACTCTAAGCTACTATCTAAAC
66 CCCATATTAATCCCTAAACTCTAAGCTACTAGCTAAAC
** * *
26397769 CCTAAACCCTAAAATATAAAATTTAAACCCTAAACCATATGCCCTCTTAACCCATATACCCTATG
1 CCTAAACAATAAAATATAAAATCTAAACCCTAAACCATATACCCTCTTAACCCATATACCCTATG
26397834 CCCATATTAATCCCTAAACTCTAAGCTACTAGCTAAAC
66 CCCATATTAATCCCTAAACTCTAAGCTACTAGCTAAAC
*
26397872 CCTAAACAATAAACA-ATAAACA-CTAAACCATAAACC
1 CCTAAACAATAAA-ATATAAA-ATCTAAACCCTAAACC
26397908 CACACCCTAC
Statistics
Matches: 130, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
103 128 0.98
104 2 0.02
ACGTcount: A:0.42, C:0.30, G:0.02, T:0.25
Consensus pattern (103 bp):
CCTAAACAATAAAATATAAAATCTAAACCCTAAACCATATACCCTCTTAACCCATATACCCTATG
CCCATATTAATCCCTAAACTCTAAGCTACTAGCTAAAC
Found at i:26397916 original size:41 final size:41
Alignment explanation
Indices: 26397870--26397947 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
26397860 TACTAGCTAA
26397870 ACCCTAAACAATAAACAATAAACACTAAACCATAAACCCAC
1 ACCCTAAACAATAAACAATAAACACTAAACCATAAACCCAC
* ** * *
26397911 ACCCTACACCCTAAACCATAAACACTAAATCATAAAC
1 ACCCTAAACAATAAACAATAAACACTAAACCATAAAC
26397948 TGCATACTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.53, C:0.33, G:0.00, T:0.14
Consensus pattern (41 bp):
ACCCTAAACAATAAACAATAAACACTAAACCATAAACCCAC
Found at i:26398060 original size:28 final size:28
Alignment explanation
Indices: 26397984--26398067 Score: 80
Period size: 29 Copynumber: 2.9 Consensus size: 28
26397974 CCCTAAATCG
* ** *
26397984 TAAACACTAAACTGTAAACCAATAACCCT
1 TAAACCCTAAACCCTAAACCTA-AACCCT
* *
26398013 TAAACCCT-AAGCCGATAACCTAAACCCT
1 TAAACCCTAAACCCTA-AACCTAAACCCT
26398041 TAAACCCTAAACCCTAAACCTTAAACC
1 TAAACCCTAAACCCTAAACC-TAAACC
26398068 TATAAAGCAC
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
28 21 0.48
29 23 0.52
ACGTcount: A:0.44, C:0.33, G:0.04, T:0.19
Consensus pattern (28 bp):
TAAACCCTAAACCCTAAACCTAAACCCT
Found at i:26398152 original size:22 final size:21
Alignment explanation
Indices: 26398114--26398182 Score: 77
Period size: 22 Copynumber: 3.2 Consensus size: 21
26398104 CTTTTGATTA
*
26398114 AACCC-TAAACCATAAGCCACT
1 AACCCATAAACCCTAAGCC-CT
*
26398135 AACCCATAGACCCTAAGCCCAT
1 AACCCATAAACCCTAAGCCC-T
*
26398157 AACCCCTAAACCCTAAGCTCCT
1 AACCCATAAACCCTAAGC-CCT
26398179 AACC
1 AACC
26398183 TTTACACACT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
21 6 0.15
22 33 0.80
23 2 0.05
ACGTcount: A:0.38, C:0.42, G:0.06, T:0.14
Consensus pattern (21 bp):
AACCCATAAACCCTAAGCCCT
Found at i:26398645 original size:113 final size:115
Alignment explanation
Indices: 26398391--26398726 Score: 498
Period size: 113 Copynumber: 2.9 Consensus size: 115
26398381 CAACTATTTG
*
26398391 AGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCGTCATTG
1 AGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCC-AAAGCTCAGAAAACGGCGTCGTTG
* * * *
26398456 GGCTTAGGTTTTTTTGCGACGCTTTCTCAAAAACGCCGCTAAAAAGCCTTG
65 GGCTTAGGTTTTTTTGCGGCGCTTTCACAAAAACGCCGCTAAAAAGCCCTA
* * * *
26398507 AGCATTAGAGGCGCTTTCTTAAAAACGCGGCTAAATCACCAAAGCTCAGAAAACAGCGTCGTTGG
1 AGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAGCTCAGAAAACGGCGTCGTTGG
* *
26398572 GCTTAAG-TTTTTTGCGGCGCTTTCACAAAAACGTCGCT-AAAAGCCCTA
66 GCTTAGGTTTTTTTGCGGCGCTTTCACAAAAACGCCGCTAAAAAGCCCTA
**
26398620 AGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAGCTCAGAAAACGGCGTCGTCAG
1 AGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAGCTCAGAAAACGGCGTCGTTGG
* *
26398685 GCTTAGGTTTTTTTGCGGCGCTTT-ATTAAAAACGCCACTAAA
66 GCTTAGGTTTTTTTGCGGCGCTTTCA-CAAAAACGCCGCTAAA
26398727 TCCCCAAAGC
Statistics
Matches: 196, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
113 74 0.38
114 54 0.28
115 31 0.16
116 37 0.19
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (115 bp):
AGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAGCTCAGAAAACGGCGTCGTTGG
GCTTAGGTTTTTTTGCGGCGCTTTCACAAAAACGCCGCTAAAAAGCCCTA
Found at i:26398714 original size:72 final size:72
Alignment explanation
Indices: 26398627--26398798 Score: 299
Period size: 72 Copynumber: 2.4 Consensus size: 72
26398617 CTAAGCATTA
26398627 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAGCTCAGAAAACGGCGTCGTCAGGCTTAGG
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAGCTCAGAAAACGGCGTCGTCAGGCTTAGG
26398692 TTTTTTT
66 TTTTTTT
* * **
26398699 GCGGCGCTTTATTAAAAACGCCACTAAATCCCCAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGG
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAGCTCAGAAAACGGCGTCGTCAGGCTTAGG
26398764 TTTTTTT
66 TTTTTTT
*
26398771 GCGGCGCTTTCTTAAAAATGCCGCTAAA
1 GCGGCGCTTTCTTAAAAACGCCGCTAAA
26398799 GCCCTGAGCA
Statistics
Matches: 93, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 93 1.00
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (72 bp):
GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAGCTCAGAAAACGGCGTCGTCAGGCTTAGG
TTTTTTT
Found at i:26398899 original size:113 final size:113
Alignment explanation
Indices: 26398701--26398911 Score: 307
Period size: 113 Copynumber: 1.9 Consensus size: 113
26398691 GTTTTTTTGC
* * * *
26398701 GGCGCTTTATTAAAAACGCCACTAAATCCCCAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTT
1 GGCGCTCTATTAAAAACGCCACCAAATCCCCAAAGCTCAGAAAACAGCATCGTTGGGCTTAGGTT
*
26398766 TTTTTGCGGCGCTTTCTTAAAAATGCCGCTAAAGCCCTGAGCATTAGT
66 TTTTTGCGGCGCTTTCTTAAAAACGCCGCTAAAGCCCTGAGCATTAGT
* * *
26398814 GGCGCTCTCTTAAAAACGCCGCCAAATCCCCGAAATCTCAGAAAACAGCATCGTTGGGCTTA-GT
1 GGCGCTCTATTAAAAACGCCACCAAATCCCC-AAAGCTCAGAAAACAGCATCGTTGGGCTTAGGT
* * *
26398878 TTTTTTGTGGCGCTTTTTTAAAAACGCTGCTAAA
65 TTTTTTGCGGCGCTTTCTTAAAAACGCCGCTAAA
26398912 TCTCCTAAAG
Statistics
Matches: 86, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
113 59 0.69
114 27 0.31
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (113 bp):
GGCGCTCTATTAAAAACGCCACCAAATCCCCAAAGCTCAGAAAACAGCATCGTTGGGCTTAGGTT
TTTTTGCGGCGCTTTCTTAAAAACGCCGCTAAAGCCCTGAGCATTAGT
Found at i:26398930 original size:72 final size:71
Alignment explanation
Indices: 26398812--26398976 Score: 204
Period size: 72 Copynumber: 2.3 Consensus size: 71
26398802 CTGAGCATTA
* *
26398812 GTGGCGCTCTCTTAAAAACGCCGCCAAATCCCCGAAATCTCAGAAAACAGCATCGTTGGGCTTAG
1 GTGGCGCTTTCTTAAAAACGCCGCCAAATCCCCGAAAGCTCAGAAAACAGCATCGTTGGGCTTAG
*
26398877 TTTTTTT
66 -GTTTTT
* * * * * * * *
26398884 GTGGCGCTTTTTTAAAAACGCTGCTAAATCTCCTAAAGCTCCGAAAACGGCTTCGTTGGGCTTAG
1 GTGGCGCTTTCTTAAAAACGCCGCCAAATCCCCGAAAGCTCAGAAAACAGCATCGTTGGGCTTAG
26398949 GTTTTT
66 GTTTTT
* *
26398955 GCGGCGCTTTCTCAAAAACGCC
1 GTGGCGCTTTCTTAAAAACGCC
26398977 ACTAAAAAGC
Statistics
Matches: 78, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
71 23 0.29
72 55 0.71
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.29
Consensus pattern (71 bp):
GTGGCGCTTTCTTAAAAACGCCGCCAAATCCCCGAAAGCTCAGAAAACAGCATCGTTGGGCTTAG
GTTTTT
Found at i:26398932 original size:186 final size:184
Alignment explanation
Indices: 26398516--26399097 Score: 837
Period size: 185 Copynumber: 3.1 Consensus size: 184
26398506 GAGCATTAGA
* * *
26398516 GGCGCTTTCTTAAAAACGCGGCTAAATCACCAAAGCTCAGAAAACAGCGTCGTTGGGCTTAAGTT
1 GGCGCTTTCTTAAAAACGCTGCTAAATC-CCAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTT
* * *
26398581 TTTTGCGGCGCTTTCACAAAAACGTCGCTAAAAGCCCTAAGCATTAGCGGCGCTTTCTTAAAAAC
65 TTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAC
**
26398646 GCCGCTAAATCCCCAAAGCTCAGAAAACGGCGTCGTCAGGCTTAGGTTTTTTTGC
130 GCCGCTAAATCCCCAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGC
* **
26398701 GGCGCTTTATTAAAAACGCCACTAAATCCCCAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTT
1 GGCGCTTTCTTAAAAACGCTGCTAAAT-CCCAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGG-T
* * * *
26398766 TTTTTGCGGCGCTTTCTTAAAAATGCCGCT-AAAGCCCTGAGCATTAGTGGCGCTCTCTTAAAAA
64 TTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAA
* * * * *
26398830 CGCCGCCAAATCCCCGAAATCTCAGAAAACAGCATCGTTGGGCTTA-GTTTTTTTGT
129 CGCCGCTAAATCCCC-AAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGC
* * *
26398886 GGCGCTTTTTTAAAAACGCTGCTAAATCTCCTAAAGCTCCGAAAACGGCTTCGTTGGGCTTAGG-
1 GGCGCTTTCTTAAAAACGCTGCTAAATC-CC-AAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGT
* * *
26398950 TTTTTGCGGCGCTTTCTCAAAAACGCCACTAAAAAGCCCTGAGCATTAGCAGCGCTTTATTAAAA
64 TTTTTGCGGCGCTTTCTCAAAAACGCCGCT-AAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAA
26399015 ACGCCGCTAAATCCCCAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGC
128 ACGCCGCTAAATCCCCAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGC
*
26399072 GGCGCTTTCTCAAAAACGCTGCTAAA
1 GGCGCTTTCTTAAAAACGCTGCTAAA
26399098 GCCCTGAGCA
Statistics
Matches: 351, Mismatches: 38, Indels: 15
0.87 0.09 0.04
Matches are distributed among these distances:
184 28 0.08
185 163 0.46
186 160 0.46
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.26
Consensus pattern (184 bp):
GGCGCTTTCTTAAAAACGCTGCTAAATCCCAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTT
TTTGCGGCGCTTTCTCAAAAACGCCGCTAAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACG
CCGCTAAATCCCCAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGC
Found at i:26399011 original size:299 final size:300
Alignment explanation
Indices: 26398702--26399266 Score: 970
Period size: 299 Copynumber: 1.9 Consensus size: 300
26398692 TTTTTTTGCG
26398702 GCGCTTTATTAAAAACGCCACTAAATCCCCAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTT
1 GCGCTTTATTAAAAACGCCACTAAATCCCCAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTT
* *
26398767 TTTTGCGGCGCTTTCTTAAAAATGCCGCTAAAGCCCTGAGCATTAGTGGCGCTCTCTTAAAAACG
66 TTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGTGGCGCTCTCTTAAAAACG
* * *
26398832 CCGCCAAATCCCCGAAATCTCAGAAAACAGCATCGTTGGGCTTA-GTTTTTTTGTGGCGCTTTTT
131 CCGCCAAATCCCCGAAAGCTCAGAAAACAGCATCGTTGGGCTTAGGTTTTTTTGTGGCACTTTCT
* * *
26398896 TAAAAACGCTGCTAAATCTCCTAAAGCTCCGAAAACGGCTTCGTTGGGCTTAGGTTTTTGCGGCG
196 TAAAAACGCCGCTAAATCTCCGAAAGCTCCGAAAACGGCGTCGTTGGGCTTAGGTTTTTGCGGCG
26398961 CTTTCTCAAAAACGCCACTAAAAAGCCCTGAGCATTAGCA
261 CTTTCTCAAAAACGCCACTAAAAAGCCCTGAGCATTAGCA
*
26399001 GCGCTTTATTAAAAACGCCGCTAAATCCCCAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTT
1 GCGCTTTATTAAAAACGCCACTAAATCCCCAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTT
*
26399066 TTTTGCGGCGCTTTCTCAAAAACGCTGCTAAAGCCCTGAGCATTAGTGGCGCTCTCTTAAAAACG
66 TTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGTGGCGCTCTCTTAAAAACG
* ** * *
26399131 TCGTTAAATCCTCGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTTTTTTTGTGGCACTTTCT
131 CCGCCAAATCCCCGAAAGCTCAGAAAACAGCATCGTTGGGCTTAGGTTTTTTTGTGGCACTTTCT
* *
26399196 TAAAAATGCCGCTAAATCTCCGAAAGCTCCGAAAACGGCGTCGTTGGGCTTAGGTTTTTGCGGGG
196 TAAAAACGCCGCTAAATCTCCGAAAGCTCCGAAAACGGCGTCGTTGGGCTTAGGTTTTTGCGGCG
26399261 CTTTCT
261 CTTTCT
26399267 GGAAAACATC
Statistics
Matches: 248, Mismatches: 17, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
299 164 0.66
300 84 0.34
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.28
Consensus pattern (300 bp):
GCGCTTTATTAAAAACGCCACTAAATCCCCAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTT
TTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGTGGCGCTCTCTTAAAAACG
CCGCCAAATCCCCGAAAGCTCAGAAAACAGCATCGTTGGGCTTAGGTTTTTTTGTGGCACTTTCT
TAAAAACGCCGCTAAATCTCCGAAAGCTCCGAAAACGGCGTCGTTGGGCTTAGGTTTTTGCGGCG
CTTTCTCAAAAACGCCACTAAAAAGCCCTGAGCATTAGCA
Found at i:26399062 original size:113 final size:111
Alignment explanation
Indices: 26398887--26399181 Score: 401
Period size: 113 Copynumber: 2.6 Consensus size: 111
26398877 TTTTTTTGTG
* * * * *
26398887 GCGCTTTTTTAAAAACGCTGCTAAATCTCCTAAAGCTCCGAAAACGGCTTCGTTGGGCTTAGGTT
1 GCGCTTTATTAAAAACGCCGCTAAATC-CCCAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTT
26398952 TTTGCGGCGCTTTCTCAAAAACGCCACTAAAAAGCCCTGAGCATTAGCA
65 TTTGCGGCGCTTTCTCAAAAACGCCACT--AAAGCCCTGAGCATTAGCA
*
26399001 GCGCTTTATTAAAAACGCCGCTAAATCCCCAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTT
1 GCGCTTTATTAAAAACGCCGCTAAATCCCCAAAGCTCAGAAAACGGCATCGTTGGGCTTAGG--T
** **
26399066 TTTTGCGGCGCTTTCTCAAAAACGCTGCTAAAGCCCTGAGCATTAGTG
64 TTTTGCGGCGCTTTCTCAAAAACGCCACTAAAGCCCTGAGCATTAGCA
* * * * *
26399114 GCGCTCTCTTAAAAACGTCGTTAAATCCTCGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTT
1 GCGCTTTATTAAAAACGCCGCTAAATCC-CCAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTT
26399179 TTT
65 TTT
26399182 TTGTGGCACT
Statistics
Matches: 163, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
112 5 0.03
113 73 0.45
114 57 0.35
115 28 0.17
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.27
Consensus pattern (111 bp):
GCGCTTTATTAAAAACGCCGCTAAATCCCCAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTTT
TTGCGGCGCTTTCTCAAAAACGCCACTAAAGCCCTGAGCATTAGCA
Found at i:26399068 original size:114 final size:115
Alignment explanation
Indices: 26398887--26399211 Score: 433
Period size: 114 Copynumber: 2.8 Consensus size: 115
26398877 TTTTTTTGTG
* * * * *
26398887 GCGCTTTTTTAAAAACGCTGCTAAATCTCCTAAAGCTCCGAAAACGGCTTCGTTGGGCTTAGG--
1 GCGCTTTATTAAAAACGCCGCTAAATC-CCCAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTT
*
26398950 TTTTTGCGGCGCTTTCTCAAAAACGCCACTAAAAAGCCCTGAGCATTAGCA
65 TTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAAAGCCCTGAGCATTAGCA
*
26399001 GCGCTTTATTAAAAACGCCGCTAAATCCCCAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTT
1 GCGCTTTATTAAAAACGCCGCTAAATCCCCAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTTT
* **
26399066 TTTTGCGGCGCTTTCTCAAAAACGCTGCT--AAAGCCCTGAGCATTAGTG
66 TTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAAAGCCCTGAGCATTAGCA
* * * * *
26399114 GCGCTCTCTTAAAAACGTCGTTAAATCCTCGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTT
1 GCGCTTTATTAAAAACGCCGCTAAATCC-CCAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTT
* * * *
26399179 TTTTTGTGGCACTTTCTTAAAAATGCCGCTAAA
65 TTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAA
26399212 TCTCCGAAAG
Statistics
Matches: 186, Mismatches: 20, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
113 73 0.39
114 84 0.45
115 28 0.15
116 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (115 bp):
GCGCTTTATTAAAAACGCCGCTAAATCCCCAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTTT
TTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAAAGCCCTGAGCATTAGCA
Found at i:26399212 original size:73 final size:73
Alignment explanation
Indices: 26399111--26399254 Score: 209
Period size: 73 Copynumber: 2.0 Consensus size: 73
26399101 CTGAGCATTA
* * *
26399111 GTGGCGCTCTCTTAAAAACGTCGTTAAATC-CTCGAAAGCTCAGAAAACGGCATCGTTGGGCTTA
1 GTGGCACTCTCTTAAAAACGCCGCTAAATCTC-CGAAAGCTCAGAAAACGGCATCGTTGGGCTTA
26399175 GGTTTTTTT
65 GGTTTTTTT
* * * *
26399184 GTGGCACTTTCTTAAAAATGCCGCTAAATCTCCGAAAGCTCCGAAAACGGCGTCGTTGGGCTTAG
1 GTGGCACTCTCTTAAAAACGCCGCTAAATCTCCGAAAGCTCAGAAAACGGCATCGTTGGGCTTAG
26399249 GTTTTT
66 GTTTTT
26399255 GCGGGGCTTT
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
73 62 0.98
74 1 0.02
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.31
Consensus pattern (73 bp):
GTGGCACTCTCTTAAAAACGCCGCTAAATCTCCGAAAGCTCAGAAAACGGCATCGTTGGGCTTAG
GTTTTTTT
Found at i:26402976 original size:18 final size:18
Alignment explanation
Indices: 26402935--26402976 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
26402925 CCTATATCCA
* *
26402935 CCTCTACCTCTACCTGTT
1 CCTCTTCCTCTACCTCTT
*
26402953 CCTCTTCCTCTGCCTCTT
1 CCTCTTCCTCTACCTCTT
26402971 CCTCTT
1 CCTCTT
26402977 GCACCAAAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.05, C:0.48, G:0.05, T:0.43
Consensus pattern (18 bp):
CCTCTTCCTCTACCTCTT
Found at i:26408520 original size:20 final size:20
Alignment explanation
Indices: 26408495--26408536 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
26408485 AGGCTAAAAG
26408495 TAGAAAAATAAGCAAGACCA
1 TAGAAAAATAAGCAAGACCA
26408515 TAGAAAAATAAGCAAGACCA
1 TAGAAAAATAAGCAAGACCA
26408535 TA
1 TA
26408537 AACTTGCAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.60, C:0.14, G:0.14, T:0.12
Consensus pattern (20 bp):
TAGAAAAATAAGCAAGACCA
Found at i:26413652 original size:16 final size:16
Alignment explanation
Indices: 26413631--26413661 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
26413621 TCCCTCCTTA
26413631 TATTAATGTATTTTTG
1 TATTAATGTATTTTTG
26413647 TATTAATGTATTTTT
1 TATTAATGTATTTTT
26413662 TTAGTAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.10, T:0.65
Consensus pattern (16 bp):
TATTAATGTATTTTTG
Found at i:26414232 original size:3 final size:3
Alignment explanation
Indices: 26414224--26414270 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
26414214 TAACATAAAC
*
26414224 AAT AAT AAT AAT AAT AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
26414271 CAAGAACAAG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:26414483 original size:3 final size:3
Alignment explanation
Indices: 26414456--26414513 Score: 66
Period size: 3 Copynumber: 18.7 Consensus size: 3
26414446 GTGCAATTTG
26414456 TAA TAA -AA TACA TAAA TAGA TAA TAA TAA TAA TAGA TAA -AA TAA TAA
1 TAA TAA TAA TA-A T-AA TA-A TAA TAA TAA TAA TA-A TAA TAA TAA TAA
26414503 TAA TAA TAA TA
1 TAA TAA TAA TA
26414514 GTAGTAGTAG
Statistics
Matches: 49, Mismatches: 0, Indels: 12
0.80 0.00 0.20
Matches are distributed among these distances:
2 4 0.08
3 34 0.69
4 10 0.20
5 1 0.02
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:26414494 original size:24 final size:24
Alignment explanation
Indices: 26414456--26414514 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
26414446 GTGCAATTTG
*
26414456 TAATAA-AATACAT-AAATAGATAA
1 TAATAATAATAGATAAAATA-ATAA
26414479 TAATAATAATAGATAAAATAATAA
1 TAATAATAATAGATAAAATAATAA
26414503 TAATAATAATAG
1 TAATAATAATAG
26414515 TAGTAGTAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
23 6 0.18
24 22 0.67
25 5 0.15
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (24 bp):
TAATAATAATAGATAAAATAATAA
Found at i:26416269 original size:44 final size:43
Alignment explanation
Indices: 26416216--26417148 Score: 164
Period size: 44 Copynumber: 20.3 Consensus size: 43
26416206 CTTTAAGGAA
26416216 ATAAGATTTGTAGCTTTAATTTGCTCCACTGCAACTTCAGGGAG
1 ATAAGATTTGTA-CTTTAATTTGCTCCACTGCAACTTCAGGGAG
* *
26416260 ATGAA-ATTTG-ACTTTAATCTT-TTCCACTGCTACTTCAGGGAG
1 AT-AAGATTTGTACTTTAAT-TTGCTCCACTGCAACTTCAGGGAG
* * * * **
26416302 ATAAGATTCGTAACTTCAATATGCTCAACTGCAACTTCAGAAAG
1 ATAAGATTTGT-ACTTTAATTTGCTCCACTGCAACTTCAGGGAG
* * * *
26416346 ATAAGATTAGT--TTTCCAATCTGCTCTACTGCAACTTC-GAAGAG
1 ATAAGATTTGTACTTT--AATTTGCTCCACTGCAACTTCAG-GGAG
* * * * *
26416389 ATGAGATTCGCCATAATGACTTCAA--TCCATCCTACTGCAACTTAAGGG-G
1 ATAAGATT-----T-GT-ACTTTAATTTGC-TCC-ACTGCAACTTCAGGGAG
* * * * * * *
26416438 TATAGGATTTGTGATTTTTAACTTTAAACTATTCCACTACAACTTCAAGAAA
1 -ATAAGATTTGT-A-CTTTAA-TTT--GC---TCCACTGCAACTTCAGGGAG
*** * ** ***
26416490 ATAAGATTCACATCTTCAACCTGCTCCACTATGACTTCAGGGAG
1 ATAAGATTTGTA-CTTTAATTTGCTCCACTGCAACTTCAGGGAG
* * *
26416534 ATAAAATTTGTAGCTTTAATTTGCTCCACTGCCACTTTAGGGAG
1 ATAAGATTTGTA-CTTTAATTTGCTCCACTGCAACTTCAGGGAG
* * *
26416578 ATAAGATTTGCCACGATGACTTCAATCTG-TCCCACTGTAACTTCAGGGGTATAGG
1 ATAAGATTT-----G-T-ACTTTAATTTGCT-CCACTGCAACTTCA-GGG---A-G
* * * ** * * *
26416633 ATTTATGGTTTGTAGCTTTAATCTATTCCACTGTATCTTCAGGGAA
1 A--TAAGATTTGTA-CTTTAATTTGCTCCACTGCAACTTCAGGGAG
* * * * * *
26416679 ATAAGATTCGCTATCTTCAATCTGCTCCACTGCATCTTTAAGGAG
1 ATAAGATTTG-TA-CTTTAATTTGCTCCACTGCAACTTCAGGGAG
* * ** *
26416724 ATAAAATTTGTAACTTGTAGCTTTAATTTGTTCCACTGCAACTTCAAAGAA
1 AT--AA---G--ATTTGTA-CTTTAATTTGCTCCACTGCAACTTCAGGGAG
* * * *
26416775 ATAAGATTCGCTA-TATTCAATCTGCTCTACTGCAATTTCAGGGAG
1 ATAAGATTTG-TACT-TT-AATTTGCTCCACTGCAACTTCAGGGAG
* * * * * * * **
26416820 ATAAGACTTATAGTTTTAATCTACTCTACTGCAATTTCAGAAAG
1 ATAAGATTTGTA-CTTTAATTTGCTCCACTGCAACTTCAGGGAG
* * * * * *
26416864 ATAAGATTTGTTATCTTCAATCTACTCCATTGCATCTTTAGGGAG
1 ATAAGATTTG-TA-CTTTAATTTGCTCCACTGCAACTTCAGGGAG
* * *
26416909 ATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAA
1 ATAAGA----T---TTGTA-CTTTAATTTGCTCCACTGCAACTTCAGGGAG
* * * * * **
26416960 ATAAGATTCGCTA-TATTCAATCTGCTCCAATACAAATTTTGGGAG
1 ATAAGATTTG-TACT-TT-AATTTGCTCCACTGCAACTTCAGGGAG
* * * * * * *
26417005 ATAAGACTTATAGCTTTGATCTGCTCTACTACAACTTCAGAGAG
1 ATAAGATTTGTA-CTTTAATTTGCTCCACTGCAACTTCAGGGAG
* * * *
26417049 ATAAGATTTGCTATCTTCAATCTGCTCCGCTGCAACTTTAGGGAG
1 ATAAGATTTG-TA-CTTTAATTTGCTCCACTGCAACTTCAGGGAG
* * * * *
26417094 ATAAAATTTGTGACTTTAATCT-CTTCCATTGCCATTTCAGGGAG
1 ATAAGATTTGT-ACTTTAATTTGC-TCCACTGCAACTTCAGGGAG
*
26417138 ATAAGTTTTGT
1 ATAAGATTTGT
26417149 CACGGTGACC
Statistics
Matches: 646, Mismatches: 166, Indels: 154
0.67 0.17 0.16
Matches are distributed among these distances:
41 4 0.01
42 33 0.05
43 36 0.06
44 210 0.33
45 163 0.25
46 4 0.01
47 5 0.01
48 3 0.00
49 10 0.02
50 51 0.08
51 105 0.16
52 13 0.02
54 1 0.00
55 2 0.00
57 6 0.01
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (43 bp):
ATAAGATTTGTACTTTAATTTGCTCCACTGCAACTTCAGGGAG
Found at i:26416661 original size:189 final size:190
Alignment explanation
Indices: 26416386--26416735 Score: 454
Period size: 189 Copynumber: 1.8 Consensus size: 190
26416376 CAACTTCGAA
* * * *
26416386 GAGATGAGATTCGCCATAATGACTTCAATCCATCCTACTGCAACTTAAGGGGTATAGGATTTGTG
1 GAGATAAGATTCGCCACAATGACTTCAATCCATCCCACTGCAACTTAAGGGGTATAGGATTTATG
*
26416451 ATTTTTAACTTTAAACTATTCCACTACAACTTCAAGAAAATAAGATTCAC-ATCTTCAACCTGCT
66 ATTTGTAACTTTAAACTATTCCACTACAACTTCAAGAAAATAAGATTCACTATCTTCAACCTGCT
*
26416515 CCACT--ATGACTTCAGGGAGATAAAATTTGTAGCTTTAATTTGCTCCACTGCCACTTTAGG
131 CCACTGCAT--CTTCAAGGAGATAAAATTTGTAGCTTTAATTTGCTCCACTGCCACTTTAGG
* * ** * *
26416575 GAGATAAGATTTGCCACGATGACTTCAATCTGTCCCACTGTAACTTCAGGGGTATAGGATTTATG
1 GAGATAAGATTCGCCACAATGACTTCAATCCATCCCACTGCAACTTAAGGGGTATAGGATTTATG
* * * ** * * * * *
26416640 GTTTGTAGCTTTAATCTATTCCACTGTATCTTCAGGGAAATAAGATTCGCTATCTTCAATCTGCT
66 ATTTGTAACTTTAAACTATTCCACTACAACTTCAAGAAAATAAGATTCACTATCTTCAACCTGCT
*
26416705 CCACTGCATCTTTAAGGAGATAAAATTTGTA
131 CCACTGCATCTTCAAGGAGATAAAATTTGTA
26416736 ACTTGTAGCT
Statistics
Matches: 135, Mismatches: 23, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
189 95 0.70
190 38 0.28
192 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (190 bp):
GAGATAAGATTCGCCACAATGACTTCAATCCATCCCACTGCAACTTAAGGGGTATAGGATTTATG
ATTTGTAACTTTAAACTATTCCACTACAACTTCAAGAAAATAAGATTCACTATCTTCAACCTGCT
CCACTGCATCTTCAAGGAGATAAAATTTGTAGCTTTAATTTGCTCCACTGCCACTTTAGG
Found at i:26416758 original size:96 final size:95
Alignment explanation
Indices: 26416642--26417109 Score: 451
Period size: 96 Copynumber: 5.0 Consensus size: 95
26416632 GATTTATGGT
* * *
26416642 TTGTAGCTTTAATCTATTCCACTGTATCTTCAGGGAAATAAGATTCGCTATCTTCAATCTGCTCC
1 TTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAATCTGCTCC
*
26416707 ACTGCATCTTTAAGGAGATAAAATTTGTAAC
66 ACTGCATCTTTAGGGAGATAAAATTTGT-AC
* ** * *
26416738 TTGTAGCTTTAATTTGTTCCACTGCAACTTCAAAGAAATAAGATTCGCTATATTCAATCTGCTCT
1 TTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAATCTGCTCC
*
26416803 ACTGCAAT-TTCAGGGAGAT--AA---G-AC
66 ACTGC-ATCTTTAGGGAGATAAAATTTGTAC
* * ** * * * * * *
26416827 TTATAGTTTTAATCTACTCTACTGCAATTTCA-GAAAGATAAGATTTGTTATCTTCAATCTACTC
1 TTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAA-ATAAGATTCGCTATCTTCAATCTGCTC
* *
26416891 CATTGCATCTTTAGGGAGATAAGATTTGTAAC
65 CACTGCATCTTTAGGGAGATAAAATTTGT-AC
*
26416923 TTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATATTCAATCTGCTCC
1 TTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAATCTGCTCC
* * ** *
26416988 AATACAAATTTTGGGAGAT--AA---G-AC
66 ACTGCATCTTTAGGGAGATAAAATTTGTAC
* * * * * * * *
26417012 TTATAGCTTTGATCTGCTCTACTACAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCC
1 TTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAATCTGCTCC
* *
26417077 GCTGCAACTTTAGGGAGATAAAATTTGTGAC
66 ACTGCATCTTTAGGGAGATAAAATTTGT-AC
26417108 TT
1 TT
26417110 TAATCTCTTC
Statistics
Matches: 296, Mismatches: 58, Indels: 36
0.76 0.15 0.09
Matches are distributed among these distances:
88 4 0.01
89 136 0.46
91 5 0.02
94 5 0.02
96 141 0.48
97 5 0.02
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36
Consensus pattern (95 bp):
TTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAATCTGCTCC
ACTGCATCTTTAGGGAGATAAAATTTGTAC
Found at i:26416900 original size:185 final size:185
Alignment explanation
Indices: 26416679--26417109 Score: 648
Period size: 185 Copynumber: 2.3 Consensus size: 185
26416669 CTTCAGGGAA
* *
26416679 ATAAGATTCGCTATCTTCAATCTGCTCCACTGCATCTTTAAGGAGATAAAATTTGTAACTTGTAG
1 ATAAGATTTGCTATCTTCAATCTGCTCCACTGCATCTTTAGGGAGATAAAATTTGTAACTTGTAG
* * * *
26416744 CTTTAATTTGTTCCACTGCAACTTCAAAGAAATAAGATTCGCTATATTCAATCTGCTCTACTGC-
66 CTTTAATCTGTTCCACTGCAACTTCAAAGAAATAAGATTCGCTATATTCAATCTGCTCCAATACA
* * *
26416808 AATTTCAGGGAGATAAGACTTATAGTTTTAATCTACTCTACTGCAATTTCAGAAAG
131 AATTT-AGGGAGATAAGACTTATAGCTTTAATCTACTCTACTACAACTTCAGAAAG
* * * *
26416864 ATAAGATTTGTTATCTTCAATCTACTCCATTGCATCTTTAGGGAGATAAGATTTGTAACTTGTAG
1 ATAAGATTTGCTATCTTCAATCTGCTCCACTGCATCTTTAGGGAGATAAAATTTGTAACTTGTAG
**
26416929 CTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATATTCAATCTGCTCCAATACA
66 CTTTAATCTGTTCCACTGCAACTTCAAAGAAATAAGATTCGCTATATTCAATCTGCTCCAATACA
* * * *
26416994 AATTTTGGGAGATAAGACTTATAGCTTTGATCTGCTCTACTACAACTTCAGAGAG
131 AATTTAGGGAGATAAGACTTATAGCTTTAATCTACTCTACTACAACTTCAGAAAG
* * *
26417049 ATAAGATTTGCTATCTTCAATCTGCTCCGCTGCAACTTTAGGGAGATAAAATTTGTGACTT
1 ATAAGATTTGCTATCTTCAATCTGCTCCACTGCATCTTTAGGGAGATAAAATTTGTAACTT
26417110 TAATCTCTTC
Statistics
Matches: 219, Mismatches: 26, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
185 214 0.98
186 5 0.02
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.35
Consensus pattern (185 bp):
ATAAGATTTGCTATCTTCAATCTGCTCCACTGCATCTTTAGGGAGATAAAATTTGTAACTTGTAG
CTTTAATCTGTTCCACTGCAACTTCAAAGAAATAAGATTCGCTATATTCAATCTGCTCCAATACA
AATTTAGGGAGATAAGACTTATAGCTTTAATCTACTCTACTACAACTTCAGAAAG
Found at i:26416907 original size:89 final size:89
Alignment explanation
Indices: 26416679--26417097 Score: 358
Period size: 89 Copynumber: 4.6 Consensus size: 89
26416669 CTTCAGGGAA
* * * * *
26416679 ATAAGATTCGCTATCTTCAATCTGCTCCACTGCATCTTTAAGGAGATAAAATTTGTAACTTGTAG
1 ATAAGATTTGCTATCTTCAATCTGCTCCAATGCAACTTTAGGGAGAT--AA---G--ACTTATAG
* * * *
26416744 CTTTAATTTGTTCCACTGCAACTTCA-AAGAA
59 CTTTAATCTGCTCTACTGCAACTTCAGAA-AG
* * * * *
26416775 ATAAGATTCGCTATATTCAATCTGCTCTACTGCAA-TTTCAGGGAGATAAGACTTATAGTTTTAA
1 ATAAGATTTGCTATCTTCAATCTGCTCCAATGCAACTTT-AGGGAGATAAGACTTATAGCTTTAA
* *
26416839 TCTACTCTACTGCAATTTCAGAAAG
65 TCTGCTCTACTGCAACTTCAGAAAG
* * * * *
26416864 ATAAGATTTGTTATCTTCAATCTACTCCATTGCATCTTTAGGGAGATAAGATTTGTAACTTGTAG
1 ATAAGATTTGCTATCTTCAATCTGCTCCAATGCAACTTTAGGGAGAT-A-A---G--ACTTATAG
* * *
26416929 CTTTAATCTGTTCCACTGCAACTTCAGGGAA-
59 CTTTAATCTGCTCTACTGCAACTTCA-GAAAG
* * * * * *
26416960 ATAAGATTCGCTATATTCAATCTGCTCCAATACAAATTTTGGGAGATAAGACTTATAGCTTTGAT
1 ATAAGATTTGCTATCTTCAATCTGCTCCAATGCAACTTTAGGGAGATAAGACTTATAGCTTTAAT
* *
26417025 CTGCTCTACTACAACTTCAGAGAG
66 CTGCTCTACTGCAACTTCAGAAAG
**
26417049 ATAAGATTTGCTATCTTCAATCTGCTCCGCTGCAACTTTAGGGAGATAA
1 ATAAGATTTGCTATCTTCAATCTGCTCCAATGCAACTTTAGGGAGATAA
26417098 AATTTGTGAC
Statistics
Matches: 262, Mismatches: 49, Indels: 31
0.77 0.14 0.09
Matches are distributed among these distances:
88 2 0.01
89 135 0.52
90 6 0.02
91 3 0.01
94 4 0.02
95 4 0.02
96 105 0.40
97 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.35
Consensus pattern (89 bp):
ATAAGATTTGCTATCTTCAATCTGCTCCAATGCAACTTTAGGGAGATAAGACTTATAGCTTTAAT
CTGCTCTACTGCAACTTCAGAAAG
Found at i:26423838 original size:3 final size:3
Alignment explanation
Indices: 26423830--26423916 Score: 86
Period size: 3 Copynumber: 28.7 Consensus size: 3
26423820 TAACAATTTG
** * * * * *
26423830 ATA ATA ATA ATA ATA GCA ATA ATTA TTA ATC ATC ATA ATA TTA A-C
1 ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA
26423875 ATAA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
26423917 GAGGGTGACA
Statistics
Matches: 69, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
2 1 0.01
3 64 0.93
4 4 0.06
ACGTcount: A:0.60, C:0.05, G:0.01, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:26423994 original size:4 final size:4
Alignment explanation
Indices: 26423985--26424021 Score: 56
Period size: 4 Copynumber: 9.2 Consensus size: 4
26423975 AAGGACAAGG
* *
26423985 AAAT AAAT AAAT AAAT AAAT ACAT AAAT AATT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
26424022 TAGAGGAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (4 bp):
AAAT
Found at i:26424127 original size:24 final size:23
Alignment explanation
Indices: 26424089--26424137 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
26424079 GTGCAATTTG
26424089 TAATAAAATACAT-AAATAGATAA
1 TAATAAAATACATAAAATA-ATAA
*
26424112 TAATAATAATAGATAAAATAATAA
1 TAATAA-AATACATAAAATAATAA
26424136 TA
1 TA
26424138 GTAAGAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 6 0.26
24 12 0.52
25 5 0.22
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (23 bp):
TAATAAAATACATAAAATAATAA
Found at i:26424131 original size:15 final size:15
Alignment explanation
Indices: 26424091--26424138 Score: 69
Period size: 15 Copynumber: 3.0 Consensus size: 15
26424081 GCAATTTGTA
26424091 ATAAAATACATAAATAG
1 ATAAAATA-AT-AATAG
26424108 ATAATAATAATAATAG
1 ATAA-AATAATAATAG
26424124 ATAAAATAATAATAG
1 ATAAAATAATAATAG
26424139 TAAGAAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
15 11 0.37
16 9 0.30
17 6 0.20
18 4 0.13
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (15 bp):
ATAAAATAATAATAG
Found at i:26424147 original size:18 final size:18
Alignment explanation
Indices: 26424091--26424137 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
26424081 GCAATTTGTA
26424091 ATAAAATACAT-A-AATAG
1 ATAAAATA-ATAATAATAG
26424108 AT--AATAATAATAATAG
1 ATAAAATAATAATAATAG
26424124 ATAAAATAATAATA
1 ATAAAATAATAATA
26424138 GTAAGAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
14 2 0.08
15 5 0.19
16 7 0.27
17 2 0.08
18 10 0.38
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (18 bp):
ATAAAATAATAATAATAG
Found at i:26430964 original size:23 final size:21
Alignment explanation
Indices: 26430912--26430965 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 21
26430902 AGCATGATTT
26430912 TAAAAAATACTCATATTTATA
1 TAAAAAATACTCATATTTATA
* *
26430933 TAATTAAAATATTCGTAATTTACTA
1 TAA--AAAATACTCAT-ATTTA-TA
26430958 TAAAAAAT
1 TAAAAAAT
26430966 TTATTATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
21 3 0.11
23 14 0.52
24 5 0.19
25 5 0.19
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.39
Consensus pattern (21 bp):
TAAAAAATACTCATATTTATA
Found at i:26431118 original size:33 final size:33
Alignment explanation
Indices: 26431085--26431145 Score: 92
Period size: 30 Copynumber: 1.9 Consensus size: 33
26431075 GTAAAATTTA
26431085 TTATTAAAAT--TAAATTAAA-TATTAAATAAT
1 TTATTAAAATAATAAATTAAATTATTAAATAAT
*
26431115 TTATTAAAATAATAGATTAAATTATTAAATA
1 TTATTAAAATAATAAATTAAATTATTAAATA
26431146 TAAATAATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 10 0.37
32 8 0.30
33 9 0.33
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (33 bp):
TTATTAAAATAATAAATTAAATTATTAAATAAT
Found at i:26431148 original size:22 final size:21
Alignment explanation
Indices: 26431115--26431158 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 21
26431105 ATTAAATAAT
26431115 TTATTAAAAT-AATAGATTAAA
1 TTATTAAAATAAATA-ATTAAA
26431136 TTATTAAATATAAATAATTAAA
1 TTATTAAA-ATAAATAATTAAA
26431158 T
1 T
26431159 ATGTTTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 8 0.38
22 9 0.43
23 4 0.19
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (21 bp):
TTATTAAAATAAATAATTAAA
Found at i:26431168 original size:33 final size:35
Alignment explanation
Indices: 26431131--26431204 Score: 134
Period size: 33 Copynumber: 2.2 Consensus size: 35
26431121 AAATAATAGA
26431131 TTAAATTATTAAATATAAATAATTAAATATGT-T-
1 TTAAATTATTAAATATAAATAATTAAATATGTATG
26431164 TTAAATTATTAAATATAAATAATTAAATATGTATG
1 TTAAATTATTAAATATAAATAATTAAATATGTATG
26431199 TTAAAT
1 TTAAAT
26431205 AATATTGAAC
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 32 0.82
34 1 0.03
35 6 0.15
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (35 bp):
TTAAATTATTAAATATAAATAATTAAATATGTATG
Found at i:26431183 original size:47 final size:46
Alignment explanation
Indices: 26431092--26431207 Score: 121
Period size: 47 Copynumber: 2.5 Consensus size: 46
26431082 TTATTATTAA
*
26431092 AATTAAAT-TAAATATTAAATAATTTATTAAAATAATAGATTAAAT
1 AATTAAATATAAATATTAAATAATTTATTAAAATAATAAATTAAAT
* * *
26431137 TATTAAATATAAATAATTAAAT-ATGTT-TTAAATTATTAAATATAAAT
1 AATTAAATATAAAT-ATTAAATAAT-TTATTAAAATAATAAAT-TAAAT
** *
26431184 AATTAAATATGTATGTTAAATAAT
1 AATTAAATATAAATATTAAATAAT
26431208 ATTGAACATT
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
45 7 0.12
46 24 0.41
47 27 0.47
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.42
Consensus pattern (46 bp):
AATTAAATATAAATATTAAATAATTTATTAAAATAATAAATTAAAT
Found at i:26431192 original size:8 final size:8
Alignment explanation
Indices: 26431097--26431192 Score: 51
Period size: 8 Copynumber: 12.1 Consensus size: 8
26431087 ATTAAAATTA
26431097 AATTAAAT
1 AATTAAAT
26431105 -ATTAAAT
1 AATTAAAT
* *
26431112 AATTTATT
1 AATTAAAT
*
26431120 AA-AATAAT
1 AATTA-AAT
26431128 AGATTAAAT
1 A-ATTAAAT
*
26431137 TATTAAAT
1 AATTAAAT
26431145 -A-TAAAT
1 AATTAAAT
26431151 AATTAAAT
1 AATTAAAT
*
26431159 ATGTTTTAAAT
1 A---ATTAAAT
*
26431170 TATTAAAT
1 AATTAAAT
26431178 -A-TAAAT
1 AATTAAAT
26431184 AATTAAAT
1 AATTAAAT
26431192 A
1 A
26431193 TGTATGTTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 22
0.68 0.10 0.22
Matches are distributed among these distances:
6 10 0.15
7 11 0.16
8 35 0.52
9 4 0.06
10 1 0.01
11 6 0.09
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (8 bp):
AATTAAAT
Found at i:26433291 original size:3 final size:3
Alignment explanation
Indices: 26433285--26433353 Score: 68
Period size: 3 Copynumber: 23.3 Consensus size: 3
26433275 AAAAGAAAAA
* * * *
26433285 AAG AAG AAG AAG AAG -AG GAG GAG GAG GAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
* * *
26433332 AAG AAA AAA AAG AAG GAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG A
26433354 GACAAGTTGA
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
2 2 0.03
3 58 0.97
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:26438523 original size:50 final size:50
Alignment explanation
Indices: 26438448--26438551 Score: 208
Period size: 50 Copynumber: 2.1 Consensus size: 50
26438438 AATAACAATA
26438448 ACACCTATGAAATAACGGAAAAAGACTTGCTTGGATCACCCTTTGGAACC
1 ACACCTATGAAATAACGGAAAAAGACTTGCTTGGATCACCCTTTGGAACC
26438498 ACACCTATGAAATAACGGAAAAAGACTTGCTTGGATCACCCTTTGGAACC
1 ACACCTATGAAATAACGGAAAAAGACTTGCTTGGATCACCCTTTGGAACC
26438548 ACAC
1 ACAC
26438552 TGCTCACATC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 54 1.00
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.21
Consensus pattern (50 bp):
ACACCTATGAAATAACGGAAAAAGACTTGCTTGGATCACCCTTTGGAACC
Found at i:26438821 original size:39 final size:39
Alignment explanation
Indices: 26438778--26438908 Score: 174
Period size: 39 Copynumber: 3.4 Consensus size: 39
26438768 TTTAAGCATG
* * *
26438778 TATCACATTACACATATAAACACATAACATTCAAGTATA
1 TATCACAATACTCATATAATCACATAACATTCAAGTATA
* *
26438817 TATCACAATACTCATATAATCACATAAGATTTAA-TCATA
1 TATCACAATACTCATATAATCACATAACATTCAAGT-ATA
* *
26438856 TATCACAATATTCATATAATCACATAACATTCAAGCATA
1 TATCACAATACTCATATAATCACATAACATTCAAGTATA
*
26438895 TATCAAAATACTCA
1 TATCACAATACTCA
26438909 AAAACATGTT
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
38 1 0.01
39 78 0.99
ACGTcount: A:0.47, C:0.20, G:0.02, T:0.31
Consensus pattern (39 bp):
TATCACAATACTCATATAATCACATAACATTCAAGTATA
Found at i:26442633 original size:30 final size:30
Alignment explanation
Indices: 26442599--26442657 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
26442589 TCAATAAAGG
26442599 TAGGCAACAACCAAACAATTTAATACAACA
1 TAGGCAACAACCAAACAATTTAATACAACA
**
26442629 TAGGCAATGACCAAACAATTTAATACAAC
1 TAGGCAACAACCAAACAATTTAATACAAC
26442658 GTGAAAAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.51, C:0.22, G:0.08, T:0.19
Consensus pattern (30 bp):
TAGGCAACAACCAAACAATTTAATACAACA
Found at i:26442989 original size:14 final size:14
Alignment explanation
Indices: 26442940--26442983 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
26442930 TGCAAATGGC
* *
26442940 AAACATATTTGAAC
1 AAACATATTTAAAT
*
26442954 ACACAATATTTAAAT
1 AAAC-ATATTTAAAT
26442969 AAACATATTTAAAT
1 AAACATATTTAAAT
26442983 A
1 A
26442984 CTCATAAATC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
14 14 0.56
15 11 0.44
ACGTcount: A:0.55, C:0.11, G:0.02, T:0.32
Consensus pattern (14 bp):
AAACATATTTAAAT
Found at i:26443235 original size:16 final size:16
Alignment explanation
Indices: 26443214--26443256 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
26443204 TTTCAAATTT
*
26443214 TAAATCTAAACAACCC
1 TAAATCAAAACAACCC
*
26443230 TAAATCAAAATAACCC
1 TAAATCAAAACAACCC
26443246 TAAATCCAAAA
1 TAAAT-CAAAA
26443257 AAGTAAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 19 0.79
17 5 0.21
ACGTcount: A:0.56, C:0.26, G:0.00, T:0.19
Consensus pattern (16 bp):
TAAATCAAAACAACCC
Found at i:26447771 original size:37 final size:37
Alignment explanation
Indices: 26447694--26447772 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
26447684 TTATTACGAA
* * * * *
26447694 GTCTTACCCGGATATAATCTCCACATGAAGTTATCAG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
* *
26447731 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
26447768 GTCTT
1 GTCTT
26447773 TAGAGCTCGG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
Found at i:26447969 original size:47 final size:47
Alignment explanation
Indices: 26447891--26448305 Score: 661
Period size: 47 Copynumber: 8.7 Consensus size: 47
26447881 CCCTTCGGGA
* * * * * *
26447891 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26447938 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26447985 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26448032 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26448079 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26448126 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26448173 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26448222 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26448271 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
26448306 AGAATCCTAA
Statistics
Matches: 348, Mismatches: 17, Indels: 6
0.94 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 252 0.72
49 95 0.27
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26455871 original size:48 final size:48
Alignment explanation
Indices: 26455800--26455898 Score: 189
Period size: 48 Copynumber: 2.1 Consensus size: 48
26455790 GTTATAATTG
26455800 TAATATTGTGATAAGAAAGACAAAGGGAGAACAAAATGATAGTTTTAT
1 TAATATTGTGATAAGAAAGACAAAGGGAGAACAAAATGATAGTTTTAT
*
26455848 TAATATTGTGATAAGAAAGACAAATGGAGAACAAAATGATAGTTTTAT
1 TAATATTGTGATAAGAAAGACAAAGGGAGAACAAAATGATAGTTTTAT
26455896 TAA
1 TAA
26455899 AAAGATTGAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.48, C:0.04, G:0.19, T:0.28
Consensus pattern (48 bp):
TAATATTGTGATAAGAAAGACAAAGGGAGAACAAAATGATAGTTTTAT
Found at i:26457222 original size:26 final size:26
Alignment explanation
Indices: 26457177--26457249 Score: 105
Period size: 26 Copynumber: 2.8 Consensus size: 26
26457167 CTCTCACCCC
* *
26457177 AATTTTAACCCT-ATAAAATTTTGAT
1 AATTTTACCCCTGGTAAAATTTTGAT
26457202 AATTTTACCTCC-GGTAAAATTTTGAT
1 AATTTTACC-CCTGGTAAAATTTTGAT
26457228 AATTTTACCCCTGGTAAAATTT
1 AATTTTACCCCTGGTAAAATTT
26457250 CGAGAAAATT
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
25 10 0.23
26 33 0.77
ACGTcount: A:0.34, C:0.15, G:0.08, T:0.42
Consensus pattern (26 bp):
AATTTTACCCCTGGTAAAATTTTGAT
Found at i:26457430 original size:6 final size:6
Alignment explanation
Indices: 26457393--26457417 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
26457383 GGATTGCAAG
26457393 TTAATT TTAATT TTAATT TTAATT T
1 TTAATT TTAATT TTAATT TTAATT T
26457418 CCATTTTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TTAATT
Found at i:26460007 original size:28 final size:26
Alignment explanation
Indices: 26459966--26460050 Score: 89
Period size: 26 Copynumber: 3.2 Consensus size: 26
26459956 AGAAATTTGG
** *
26459966 CATTAGAGAGTCCTGGTAGACTTCCA
1 CATTAGATCGTCCTGATAGACTTCCA
*
26459992 CAGTTAGGATCGTCCTGATGGACTTCCA
1 CA-TTA-GATCGTCCTGATAGACTTCCA
* * *
26460020 CATTAGATCGTCATGACAGAATTCCA
1 CATTAGATCGTCCTGATAGACTTCCA
26460046 CATTA
1 CATTA
26460051 AGGGTAATGC
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
26 24 0.49
27 6 0.12
28 19 0.39
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
CATTAGATCGTCCTGATAGACTTCCA
Found at i:26467167 original size:17 final size:17
Alignment explanation
Indices: 26467126--26467169 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
26467116 TTTATATCTA
*
26467126 TATACATTTTCTATTTT
1 TATATATTTTCTATTTT
*
26467143 TATTTATTTTCTTATTTT
1 TATATATTTTC-TATTTT
26467161 T-TATATTTT
1 TATATATTTT
26467170 TTCAAACACA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 16 0.70
18 7 0.30
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (17 bp):
TATATATTTTCTATTTT
Found at i:26469059 original size:33 final size:30
Alignment explanation
Indices: 26469014--26469116 Score: 104
Period size: 30 Copynumber: 3.4 Consensus size: 30
26469004 AGTAATAGTC
* *
26469014 TGGGCCTGAGCCCTATTCAGTAGCAGTACAGTG
1 TGGGCCTTAGCCCAATTCAGTAGCAGT---GTG
26469047 TGGGCCTTAGCCCAATAT-AGTAGCAGTGTG
1 TGGGCCTTAGCCCAAT-TCAGTAGCAGTGTG
* * *
26469077 TGGGCCTTAGCCCAATACAGTAACA--GAG
1 TGGGCCTTAGCCCAATTCAGTAGCAGTGTG
26469105 TGGGCCTTAGCC
1 TGGGCCTTAGCC
26469117 GAAGATAGTA
Statistics
Matches: 63, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
28 14 0.22
30 25 0.40
33 23 0.37
34 1 0.02
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.23
Consensus pattern (30 bp):
TGGGCCTTAGCCCAATTCAGTAGCAGTGTG
Found at i:26469080 original size:30 final size:30
Alignment explanation
Indices: 26469044--26469131 Score: 117
Period size: 30 Copynumber: 3.0 Consensus size: 30
26469034 TAGCAGTACA
*
26469044 GTGTGGGCCTTAGCCCAATATAGTAGCAGT
1 GTGTGGGCCTTAGCCCAATATAGTAACAGT
*
26469074 GTGTGGGCCTTAGCCCAATACAGTAACA--
1 GTGTGGGCCTTAGCCCAATATAGTAACAGT
* * *
26469102 GAGTGGGCCTTAGCCGAAGATAGTAACAGT
1 GTGTGGGCCTTAGCCCAATATAGTAACAGT
26469132 ACAATGCAGT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
28 24 0.48
30 26 0.52
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (30 bp):
GTGTGGGCCTTAGCCCAATATAGTAACAGT
Found at i:26469116 original size:28 final size:28
Alignment explanation
Indices: 26469037--26469131 Score: 111
Period size: 28 Copynumber: 3.4 Consensus size: 28
26469027 TATTCAGTAG
26469037 CAGT-ACAGTGTGGGCCTTAGCCCAATA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
* *
26469064 TAGTAGCAGTGTGTGGGCCTTAGCCCAATA
1 CAGTAACA--GTGTGGGCCTTAGCCCAATA
* * *
26469094 CAGTAACAGAGTGGGCCTTAGCCGAAGA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
*
26469122 TAGTAACAGT
1 CAGTAACAGT
26469132 ACAATGCAGT
Statistics
Matches: 56, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
27 3 0.05
28 27 0.48
30 26 0.46
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.22
Consensus pattern (28 bp):
CAGTAACAGTGTGGGCCTTAGCCCAATA
Found at i:26469276 original size:26 final size:26
Alignment explanation
Indices: 26469238--26469308 Score: 97
Period size: 26 Copynumber: 2.7 Consensus size: 26
26469228 CACCAATATC
*
26469238 GCAACAAAGCTGCCAGTAATAATGAT
1 GCAACAAAGCTGCCAGTAATAATAAT
* * *
26469264 GCAGCAACGCTGCCAGTAATAGTAAT
1 GCAACAAAGCTGCCAGTAATAATAAT
*
26469290 GCAACAAAGCTGCAAGTAA
1 GCAACAAAGCTGCCAGTAA
26469309 CAGTGTATGT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.41, C:0.21, G:0.21, T:0.17
Consensus pattern (26 bp):
GCAACAAAGCTGCCAGTAATAATAAT
Found at i:26469534 original size:27 final size:27
Alignment explanation
Indices: 26469504--26469818 Score: 346
Period size: 27 Copynumber: 11.7 Consensus size: 27
26469494 ATGCTTTGGA
*
26469504 GGTATTTCGGCCATTTTACCCTTCGAG
1 GGTATTTCGGTCATTTTACCCTTCGAG
** * *
26469531 GGTATTTCAATTATTTTACCCTTCAAG
1 GGTATTTCGGTCATTTTACCCTTCGAG
** * *
26469558 GGTATTTCATTCATTTTACCTTTCAAG
1 GGTATTTCGGTCATTTTACCCTTCGAG
* ** * *
26469585 GATATTTTAGTCATTTTACCTTTTGAG
1 GGTATTTCGGTCATTTTACCCTTCGAG
* * *
26469612 GGTATTTCAGTCATTTTATCCTTCGGG
1 GGTATTTCGGTCATTTTACCCTTCGAG
* *
26469639 GGTATTTCGATCATTTTACCGTTCG-G
1 GGTATTTCGGTCATTTTACCCTTCGAG
* *
26469665 GAGTATTTCGTTCATTTTACCCTTTGAG
1 G-GTATTTCGGTCATTTTACCCTTCGAG
**
26469693 GGTATTTTAGTCATTTTACCCTTCGAG
1 GGTATTTCGGTCATTTTACCCTTCGAG
26469720 GGTATTTCGGTCATTTTACCCTTCGAG
1 GGTATTTCGGTCATTTTACCCTTCGAG
* *
26469747 GGTATTTCGATCATTTTACCTTTCGAG
1 GGTATTTCGGTCATTTTACCCTTCGAG
* *
26469774 GGTATTTTGGTCATTTCACCCTTCG-G
1 GGTATTTCGGTCATTTTACCCTTCGAG
*
26469800 GGCTATTTTGGTCATTTTA
1 GG-TATTTCGGTCATTTTA
26469819 GACCCATTCC
Statistics
Matches: 246, Mismatches: 39, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
26 5 0.02
27 239 0.97
28 2 0.01
ACGTcount: A:0.18, C:0.19, G:0.19, T:0.45
Consensus pattern (27 bp):
GGTATTTCGGTCATTTTACCCTTCGAG
Found at i:26474296 original size:27 final size:27
Alignment explanation
Indices: 26474266--26474357 Score: 116
Period size: 27 Copynumber: 3.4 Consensus size: 27
26474256 GGTATAACGA
26474266 TAATTTTACCCTTCGAGGGTATTTTGG
1 TAATTTTACCCTTCGAGGGTATTTTGG
**
26474293 TAATTTTA-CCTTTTAGGGGTATTTTGG
1 TAATTTTACCCTTCGA-GGGTATTTTGG
*
26474320 TAATTTT-CCCTTCGAGGGTATTTCGG
1 TAATTTTACCCTTCGAGGGTATTTTGG
* *
26474346 TCATTCTACCCT
1 TAATTTTACCCT
26474358 ATGGGGGTAT
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
26 20 0.36
27 35 0.64
ACGTcount: A:0.17, C:0.17, G:0.20, T:0.46
Consensus pattern (27 bp):
TAATTTTACCCTTCGAGGGTATTTTGG
Found at i:26474394 original size:80 final size:80
Alignment explanation
Indices: 26474270--26474480 Score: 228
Period size: 80 Copynumber: 2.6 Consensus size: 80
26474260 TAACGATAAT
* * * * * * * * * *
26474270 TTTACCCT-TCGAGGGTATTTTGGTAATTTTACCTTTTAGGGGTATTTTGGTAATTTTCCCTTCG
1 TTTACCCTAT-GAGGGTATTTCGATCATTCTACCCTATAGGGGTATTTTAGTAATTCTACCTTAG
26474334 AG-GGTATTTCGGTCA
65 AGAGGTATTTCGGTCA
* * * *
26474349 TTCTACCCTATGGGGGTATTTCGATCATTCTACCCTATAGGGGTATTTCAGTTATTCTACCTTAT
1 TT-TACCCTATGAGGGTATTTCGATCATTCTACCCTATAGGGGTATTTTAGTAATTCTACCTTAG
*
26474414 AGATGTATTTCGGTCA
65 AGAGGTATTTCGGTCA
* * *
26474430 TTTACCCTATGAGGGTATTTTGGTCCTTCTACCCTATAGGGGTATTTTAGT
1 TTTACCCTATGAGGGTATTTCGATCATTCTACCCTATAGGGGTATTTTAGT
26474481 GCAGATACAA
Statistics
Matches: 109, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
79 2 0.02
80 92 0.84
81 15 0.14
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.43
Consensus pattern (80 bp):
TTTACCCTATGAGGGTATTTCGATCATTCTACCCTATAGGGGTATTTTAGTAATTCTACCTTAGA
GAGGTATTTCGGTCA
Found at i:26474397 original size:54 final size:53
Alignment explanation
Indices: 26474252--26474476 Score: 195
Period size: 53 Copynumber: 4.2 Consensus size: 53
26474242 TTTCATCTCC
** * * * * * *
26474252 TAGGGGTATAACGATAATTTTACCCT-TCGAGGGTATTTTGGTAATTTTACCTTT
1 TAGGGGTATTTCGATCA-TTTACCCTAT-GAGGGTATTTCGGTCATTCTACCCTA
* * * *
26474306 TAGGGGTATTTTGGTAATTTTCCCT-TCGAGGGTATTTCGGTCATTCTACCCTA
1 TAGGGGTATTTCGATCATTTACCCTAT-GAGGGTATTTCGGTCATTCTACCCTA
* * * *
26474359 TGGGGGTATTTCGATCATTCTACCCTAT-AGGGGTATTTCAGTTATTCTACCTTA
1 TAGGGGTATTTCGATCATT-TACCCTATGA-GGGTATTTCGGTCATTCTACCCTA
** * * *
26474413 TAGATGTATTTCGGTCATTTACCCTATGAGGGTATTTTGGTCCTTCTACCCTA
1 TAGGGGTATTTCGATCATTTACCCTATGAGGGTATTTCGGTCATTCTACCCTA
26474466 TAGGGGTATTT
1 TAGGGGTATTT
26474477 TAGTGCAGAT
Statistics
Matches: 138, Mismatches: 29, Indels: 9
0.78 0.16 0.05
Matches are distributed among these distances:
53 82 0.59
54 55 0.40
55 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.42
Consensus pattern (53 bp):
TAGGGGTATTTCGATCATTTACCCTATGAGGGTATTTCGGTCATTCTACCCTA
Found at i:26474477 original size:27 final size:27
Alignment explanation
Indices: 26474282--26474476 Score: 182
Period size: 27 Copynumber: 7.3 Consensus size: 27
26474272 TACCCTTCGA
* * * * *
26474282 GGGTATTTTGGTAATTTTACCTTTTAG
1 GGGTATTTCGGTCATTCTACCCTATAG
* * * *
26474309 GGGTATTTTGGTAATT-TTCCCT-TCG
1 GGGTATTTCGGTCATTCTACCCTATAG
*
26474334 AGGGTATTTCGGTCATTCTACCCTATGG
1 -GGGTATTTCGGTCATTCTACCCTATAG
*
26474362 GGGTATTTCGATCATTCTACCCTATAG
1 GGGTATTTCGGTCATTCTACCCTATAG
* * *
26474389 GGGTATTTCAGTTATTCTACCTTATAG
1 GGGTATTTCGGTCATTCTACCCTATAG
**
26474416 ATGTATTTCGGTCATT-TACCCTAT-G
1 GGGTATTTCGGTCATTCTACCCTATAG
* *
26474441 AGGGTATTTTGGTCCTTCTACCCTATAG
1 -GGGTATTTCGGTCATTCTACCCTATAG
26474469 GGGTATTT
1 GGGTATTT
26474477 TAGTGCAGAT
Statistics
Matches: 140, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
25 3 0.02
26 37 0.26
27 97 0.69
28 3 0.02
ACGTcount: A:0.18, C:0.17, G:0.22, T:0.43
Consensus pattern (27 bp):
GGGTATTTCGGTCATTCTACCCTATAG
Found at i:26480208 original size:17 final size:17
Alignment explanation
Indices: 26480186--26480220 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
26480176 TGCACTAACC
*
26480186 TAAAAATGTAATGAAAA
1 TAAAAATGGAATGAAAA
26480203 TAAAAATGGAATGAAAA
1 TAAAAATGGAATGAAAA
26480220 T
1 T
26480221 GTATACTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.14, T:0.23
Consensus pattern (17 bp):
TAAAAATGGAATGAAAA
Found at i:26486155 original size:21 final size:21
Alignment explanation
Indices: 26486116--26486155 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26486106 TACATCAAAT
**
26486116 TTTGGTGTGGATGTGTCTGGC
1 TTTGGTGTGGATGCATCTGGC
*
26486137 TTTGTTGTGGATGCATCTG
1 TTTGGTGTGGATGCATCTG
26486156 AGTGTGCGGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.07, C:0.10, G:0.38, T:0.45
Consensus pattern (21 bp):
TTTGGTGTGGATGCATCTGGC
Found at i:26500098 original size:26 final size:26
Alignment explanation
Indices: 26500049--26500099 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26500039 CCTATAATAG
26500049 TTTTAGAATATCATAACATATATCAA
1 TTTTAGAATATCATAACATATATCAA
* *
26500075 TTTTAGAATATCATAGCATGTATCA
1 TTTTAGAATATCATAACATATATCA
26500100 GTTTCAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.41, C:0.12, G:0.08, T:0.39
Consensus pattern (26 bp):
TTTTAGAATATCATAACATATATCAA
Found at i:26506252 original size:102 final size:102
Alignment explanation
Indices: 26506063--26506260 Score: 283
Period size: 102 Copynumber: 1.9 Consensus size: 102
26506053 TGACAAAATC
* * * *
26506063 TCAATACCAAACTCAACCTCCCTATCTGAAGGCATACCCAGCAACTTCTCGGGAAAAGCATTTGA
1 TCAATACCAAACTCAACCTCCCTATCTGAAGCCATACCCAGCAACTTCTCGAGAAAAACATTCGA
*
26506128 AAATTCTCTAATTGTCAAAATATCCACAACAAAAGAT
66 AAATTCTCAAATTGTCAAAATATCCACAACAAAAGAT
26506165 TCAATACCAAACTCAACCTCCCTAAT-TGAAGCCA-ACCCCAGCAACTTCTCGAGAAAAACATTC
1 TCAATACCAAACTCAACCTCCCT-ATCTGAAGCCATA-CCCAGCAACTTCTCGAGAAAAACATTC
* * * *
26506228 GAAAATTCTCAAATTTTTAGAATATCCCCAACA
64 GAAAATTCTCAAATTGTCAAAATATCCACAACA
26506261 GAAAAGTCCA
Statistics
Matches: 85, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
101 1 0.01
102 82 0.96
103 2 0.02
ACGTcount: A:0.39, C:0.28, G:0.09, T:0.23
Consensus pattern (102 bp):
TCAATACCAAACTCAACCTCCCTATCTGAAGCCATACCCAGCAACTTCTCGAGAAAAACATTCGA
AAATTCTCAAATTGTCAAAATATCCACAACAAAAGAT
Found at i:26509441 original size:29 final size:29
Alignment explanation
Indices: 26509408--26509523 Score: 153
Period size: 29 Copynumber: 4.0 Consensus size: 29
26509398 TAGCACACGA
* *
26509408 TCTCACACACGCCTGTGTGGCCTACATGG
1 TCTCACACATGCCCGTGTGGCCTACATGG
** * *
26509437 TCTCACACATGTTCGTGTAGCCCACATGG
1 TCTCACACATGCCCGTGTGGCCTACATGG
*
26509466 TCTCACACATGCCCGTATGGTCC-ACATGG
1 TCTCACACATGCCCGTGTGG-CCTACATGG
26509495 TCTCACACATGCCCGTGTGGCCTACATGG
1 TCTCACACATGCCCGTGTGGCCTACATGG
26509524 CCCAATTAAC
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
28 2 0.03
29 70 0.95
30 2 0.03
ACGTcount: A:0.19, C:0.34, G:0.22, T:0.25
Consensus pattern (29 bp):
TCTCACACATGCCCGTGTGGCCTACATGG
Found at i:26510742 original size:19 final size:18
Alignment explanation
Indices: 26510696--26510742 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
26510686 TATTTTATAT
26510696 ATTATTATG-AGATTTAAA
1 ATTA-TATGTAGATTTAAA
* *
26510714 ATTTTTTGTAGATTTTAAA
1 ATTATATGTAGA-TTTAAA
26510733 ATTATATGTA
1 ATTATATGTA
26510743 TCATAGGTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
17 3 0.13
18 6 0.26
19 14 0.61
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (18 bp):
ATTATATGTAGATTTAAA
Found at i:26510812 original size:30 final size:30
Alignment explanation
Indices: 26510775--26510859 Score: 100
Period size: 30 Copynumber: 2.8 Consensus size: 30
26510765 TAACCTCGAT
26510775 ATAATGTCAGCTTGTGTGAGCAACTCT-AC
1 ATAATGTCAGCTTGTGTGAGCAACTCTGAC
* * *
26510804 GGTAATGTCAGGTTGTGTGAGCAACCCTGAC
1 -ATAATGTCAGCTTGTGTGAGCAACTCTGAC
* * *
26510835 ATACTATCAGCTTGTGTGAGTAACT
1 ATAATGTCAGCTTGTGTGAGCAACT
26510860 TATTCCCGAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
30 43 0.96
31 2 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31
Consensus pattern (30 bp):
ATAATGTCAGCTTGTGTGAGCAACTCTGAC
Found at i:26518267 original size:13 final size:14
Alignment explanation
Indices: 26518231--26518267 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
26518221 TTCATTTAAT
26518231 TAATATTTTTTACA
1 TAATATTTTTTACA
*
26518245 -AATATATTTTACA
1 TAATATTTTTTACA
26518258 TAAT-TTTTTT
1 TAATATTTTTT
26518268 CATTCGTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
13 17 0.85
14 3 0.15
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (14 bp):
TAATATTTTTTACA
Found at i:26528472 original size:50 final size:51
Alignment explanation
Indices: 26528397--26528497 Score: 177
Period size: 50 Copynumber: 2.0 Consensus size: 51
26528387 CTCCAGAACC
* *
26528397 ATAAACATGAGAAAATGCCAGTGTGGC-TATATGTGGAATGACTATGATCA
1 ATAAACAAGAGAAAATGCCAGTGTGGCATATATGTAGAATGACTATGATCA
26528447 ATAAACAAGAGAAAATGCCAGTGTGGCATATATGTAGAATGACTATGATCA
1 ATAAACAAGAGAAAATGCCAGTGTGGCATATATGTAGAATGACTATGATCA
26528498 TGATACATTT
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
50 26 0.54
51 22 0.46
ACGTcount: A:0.41, C:0.12, G:0.23, T:0.25
Consensus pattern (51 bp):
ATAAACAAGAGAAAATGCCAGTGTGGCATATATGTAGAATGACTATGATCA
Found at i:26528726 original size:49 final size:50
Alignment explanation
Indices: 26528623--26528849 Score: 255
Period size: 49 Copynumber: 4.6 Consensus size: 50
26528613 CAAACACGAC
* * *
26528623 ATTATCTAGGAAGCCTTTGTGGCTAATCTTTTGAAAACCCTCTGTGGCGC
1 ATTATTTAGGAAGCCTTTGTGGCTAATCTTTTGAAAAGCCTCTGTGGCGT
* * * *
26528673 ATTATTTGGGAAGCCTTTGCGGCTAAT-GTTTGAAAAGCCTCTGTGGTGT
1 ATTATTTAGGAAGCCTTTGTGGCTAATCTTTTGAAAAGCCTCTGTGGCGT
* * * * * * * *
26528722 ATTATCTGGGAAGCCTTTGTTGTTAATCTTTTAAAAAGACTTTGTGGTGCT
1 ATTATTTAGGAAGCCTTTGTGGCTAATCTTTTGAAAAGCCTCTGTGGCG-T
*
26528773 -TT-TTCTAGGAAGCATTTGTGGCTAATC-TTTGAAAAGCCTCTGTGGCGT
1 ATTATT-TAGGAAGCCTTTGTGGCTAATCTTTTGAAAAGCCTCTGTGGCGT
*
26528821 ATTATTTAGGAAGCCTTTTTGGCTAATCT
1 ATTATTTAGGAAGCCTTTGTGGCTAATCT
26528850 CCTTAAAATC
Statistics
Matches: 145, Mismatches: 26, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
48 1 0.01
49 80 0.55
50 63 0.43
51 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.23, T:0.39
Consensus pattern (50 bp):
ATTATTTAGGAAGCCTTTGTGGCTAATCTTTTGAAAAGCCTCTGTGGCGT
Found at i:26528796 original size:99 final size:99
Alignment explanation
Indices: 26528623--26528849 Score: 294
Period size: 99 Copynumber: 2.3 Consensus size: 99
26528613 CAAACACGAC
* * * *
26528623 ATTATCTAGGAAGCCTTTGTGGCTAATCTTTTGAAAACCCTCTGTGGCGCATTATTTGGGAAGCC
1 ATTATCTAGGAAGCCTTTGTGGCTAATCTTTTAAAAACACTCTGTGGCGCATTATTTAGGAAGCA
* *
26528688 TTTGCGGCTAATGTTTGAAAAGCCTCTGTGGTGT
66 TTTGCGGCTAATCTTTGAAAAGCCTCTGTGGCGT
* * * * * * *
26528722 ATTATCTGGGAAGCCTTTGTTGTTAATCTTTTAAAAAGACTTTGTGGTGC-TTTTTCTAGGAAGC
1 ATTATCTAGGAAGCCTTTGTGGCTAATCTTTTAAAAACACTCTGTGGCGCATTATT-TAGGAAGC
*
26528786 ATTTGTGGCTAATCTTTGAAAAGCCTCTGTGGCGT
65 ATTTGCGGCTAATCTTTGAAAAGCCTCTGTGGCGT
* *
26528821 ATTATTTAGGAAGCCTTTTTGGCTAATCT
1 ATTATCTAGGAAGCCTTTGTGGCTAATCT
26528850 CCTTAAAATC
Statistics
Matches: 108, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
98 4 0.04
99 104 0.96
ACGTcount: A:0.22, C:0.16, G:0.23, T:0.39
Consensus pattern (99 bp):
ATTATCTAGGAAGCCTTTGTGGCTAATCTTTTAAAAACACTCTGTGGCGCATTATTTAGGAAGCA
TTTGCGGCTAATCTTTGAAAAGCCTCTGTGGCGT
Found at i:26535257 original size:20 final size:20
Alignment explanation
Indices: 26535234--26535282 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
26535224 ATTGCTTCAA
26535234 GTATCGATATACGACTTGAT
1 GTATCGATATACGACTTGAT
* * *
26535254 GTATCGATATATGATTTTAT
1 GTATCGATATACGACTTGAT
26535274 GTATCGATA
1 GTATCGATA
26535283 CATTTGTGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (20 bp):
GTATCGATATACGACTTGAT
Found at i:26535546 original size:13 final size:14
Alignment explanation
Indices: 26535528--26535557 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
26535518 TAATATATTT
26535528 TTATTTTAAATA-A
1 TTATTTTAAATAGA
26535541 TTATTTTAAATAGA
1 TTATTTTAAATAGA
26535555 TTA
1 TTA
26535558 GTCGAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (14 bp):
TTATTTTAAATAGA
Found at i:26537088 original size:24 final size:22
Alignment explanation
Indices: 26537049--26537105 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 22
26537039 CGAGGATATA
26537049 CAATCTT--AGATATGATATATG
1 CAATCTTAAAGATATGAT-TATG
*
26537070 CAATCTTAGAAGATATGATTTTG
1 CAATCTTA-AAGATATGATTATG
*
26537093 TAATCTTAAAGAT
1 CAATCTTAAAGAT
26537106 TTAATTTGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
21 7 0.23
22 5 0.16
23 10 0.32
24 9 0.29
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.39
Consensus pattern (22 bp):
CAATCTTAAAGATATGATTATG
Found at i:26537115 original size:21 final size:23
Alignment explanation
Indices: 26537056--26537115 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 23
26537046 ATACAATCTT
* *
26537056 AGATATGATATATGCAATCTTAGA
1 AGATATGA-ATTTGTAATCTTAGA
*
26537080 AGATATGATTTTGTAATCTTA-A
1 AGATATGAATTTGTAATCTTAGA
*
26537102 AGAT-TTAATTTGTA
1 AGATATGAATTTGTA
26537116 GATACCCTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 8 0.26
22 5 0.16
23 10 0.32
24 8 0.26
ACGTcount: A:0.38, C:0.05, G:0.15, T:0.42
Consensus pattern (23 bp):
AGATATGAATTTGTAATCTTAGA
Found at i:26537300 original size:19 final size:21
Alignment explanation
Indices: 26537276--26537314 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
26537266 ACTGTTTTCT
*
26537276 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
26537295 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
26537315 TTAAAAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:26537556 original size:3 final size:3
Alignment explanation
Indices: 26537536--26537578 Score: 52
Period size: 3 Copynumber: 14.3 Consensus size: 3
26537526 ATTAATTTTG
* *
26537536 TTA TTT TTA TTT TTA TTA TTA -TA TTA TATA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA T
26537579 ACCTACATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
2 2 0.06
3 29 0.85
4 3 0.09
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:26537834 original size:10 final size:10
Alignment explanation
Indices: 26537821--26537966 Score: 58
Period size: 12 Copynumber: 14.4 Consensus size: 10
26537811 TTTTACATAC
26537821 TTTTTT-AAT
1 TTTTTTAAAT
26537830 TTTTTTAAA-
1 TTTTTTAAAT
*
26537839 -TTTTAAAAT
1 TTTTTTAAAT
*
26537848 ATTTTTAAAAT
1 -TTTTTTAAAT
*
26537859 ACTTTTTTTAAT
1 --TTTTTTAAAT
26537871 TTTTTT-AA-
1 TTTTTTAAAT
*
26537879 -TTTTAAAAT
1 TTTTTTAAAT
*
26537888 ATTTTTAAAAT
1 -TTTTTTAAAT
26537899 ACTTTTTT-AAT
1 --TTTTTTAAAT
*
26537910 TTTTTTTAA-
1 TTTTTTAAAT
*
26537919 -TTTTAAAAT
1 TTTTTTAAAT
*
26537928 ATTTTTAAAAT
1 -TTTTTTAAAT
26537939 ACTTTTTTAAAT
1 --TTTTTTAAAT
26537951 ACTTTTTTAAAT
1 --TTTTTTAAAT
26537963 TTTT
1 TTTT
26537967 AAAAAATTTT
Statistics
Matches: 111, Mismatches: 11, Indels: 29
0.74 0.07 0.19
Matches are distributed among these distances:
7 4 0.04
8 15 0.14
9 14 0.13
10 14 0.13
11 30 0.27
12 34 0.31
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (10 bp):
TTTTTTAAAT
Found at i:26537848 original size:40 final size:39
Alignment explanation
Indices: 26537789--26537982 Score: 273
Period size: 40 Copynumber: 4.8 Consensus size: 39
26537779 AAATATATTT
* * *
26537789 ATTTTTTTAATTTTCAAATATTTTTTACATACTTTTTTA
1 ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTA
26537828 ATTTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTTA
1 ATTTTTTT-AATTTTAAAATATTTTTAAAATAC-TTTTTTA
26537869 ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTA
1 ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTA
26537908 ATTTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTAA
1 A-TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTT-A
*
26537949 ATACTTTTTTAAATTTTTAAAA-AATTTTAAAATA
1 AT--TTTTTT-AA-TTTTAAAATATTTTTAAAATA
26537983 AAAATGGGCC
Statistics
Matches: 143, Mismatches: 4, Indels: 12
0.90 0.03 0.08
Matches are distributed among these distances:
39 16 0.11
40 83 0.58
41 17 0.12
42 6 0.04
43 13 0.09
44 8 0.06
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (39 bp):
ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTA
Found at i:26537853 original size:11 final size:11
Alignment explanation
Indices: 26537839--26537982 Score: 80
Period size: 11 Copynumber: 13.9 Consensus size: 11
26537829 TTTTTTTAAA
26537839 TTTTAAAATAT
1 TTTTAAAATAT
26537850 TTTTAAAATACT
1 TTTTAAAATA-T
**
26537862 TTTTTTAAT-T
1 TTTTAAAATAT
*
26537872 TTTT----TAA
1 TTTTAAAATAT
26537879 TTTTAAAATAT
1 TTTTAAAATAT
26537890 TTTTAAAATACT
1 TTTTAAAATA-T
*
26537902 TTTT-TAAT-T
1 TTTTAAAATAT
* *
26537911 TTTT---TTAA
1 TTTTAAAATAT
26537919 TTTTAAAATAT
1 TTTTAAAATAT
26537930 TTTTAAAATACT
1 TTTTAAAATA-T
*
26537942 TTTTTAAATACT
1 TTTTAAAATA-T
*
26537954 TTTT-TAA-AT
1 TTTTAAAATAT
*
26537963 TTTTAAAA-AA
1 TTTTAAAATAT
26537973 TTTTAAAATA
1 TTTTAAAATA
26537983 AAAATGGGCC
Statistics
Matches: 106, Mismatches: 13, Indels: 28
0.72 0.09 0.19
Matches are distributed among these distances:
6 1 0.01
7 5 0.05
8 4 0.04
9 10 0.09
10 17 0.16
11 40 0.38
12 29 0.27
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:26537950 original size:12 final size:12
Alignment explanation
Indices: 26537919--26537962 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 12
26537909 TTTTTTTTAA
26537919 TTTTAAAATA-T
1 TTTTAAAATACT
26537930 TTTTAAAATACT
1 TTTTAAAATACT
*
26537942 TTTTTAAATACT
1 TTTTAAAATACT
*
26537954 TTTTTAAAT
1 TTTTAAAAT
26537963 TTTTAAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
11 10 0.32
12 21 0.68
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.57
Consensus pattern (12 bp):
TTTTAAAATACT
Found at i:26539960 original size:15 final size:16
Alignment explanation
Indices: 26539940--26539972 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26539930 CATTTTTTGT
26539940 TTCGA-TTATAATTAC
1 TTCGATTTATAATTAC
*
26539955 TTCGATTTGTAATTAC
1 TTCGATTTATAATTAC
26539971 TT
1 TT
26539973 TATTGGTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.27, C:0.12, G:0.09, T:0.52
Consensus pattern (16 bp):
TTCGATTTATAATTAC
Done.