Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 91 of 228
Found at i:26542295 original size:10 final size:9
Alignment explanation
Indices: 26542215--26542294 Score: 60
Period size: 9 Copynumber: 8.7 Consensus size: 9
26542205 GGTTATTTTT
26542215 TAAAAATT-
1 TAAAAATTA
26542223 TAAAAATTGA
1 TAAAAATT-A
26542233 -AAAAAGTTAA
1 TAAAAA-TT-A
26542243 TAAAAATTA
1 TAAAAATTA
*
26542252 TTTTAAAA-T-
1 --TAAAAATTA
26542261 TAAAAATTA
1 TAAAAATTA
*
26542270 TTAAAATGTA
1 TAAAAAT-TA
26542280 TAAAAATTA
1 TAAAAATTA
26542289 TAAAAA
1 TAAAAA
26542295 AATTAATTAA
Statistics
Matches: 58, Mismatches: 5, Indels: 17
0.73 0.06 0.21
Matches are distributed among these distances:
7 5 0.09
8 9 0.16
9 20 0.34
10 14 0.24
11 10 0.17
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (9 bp):
TAAAAATTA
Found at i:26544099 original size:124 final size:126
Alignment explanation
Indices: 26543894--26544210 Score: 460
Period size: 124 Copynumber: 2.5 Consensus size: 126
26543884 GATAAAATCA
* * * * * * * *
26543894 AAGCAGGATGATTTATCAGAAGGATTTTTGAAGTTGCGCCCACGTGTACGCGCTTTTGCTACAAT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * *
26543959 AAGTCCTTGAAAAATAATTTCGAGTTGA-GTTTCTGAGAAAATAGT-TTAAAAAACGCTTC
66 AGGTCCTTGAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTATAAAAAAACGCTGC
26544018 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* *
26544083 AGGTCC-TGAAAAAATAATTTCGAGTTGACGTTTTTGAGCAAATAGTATAAAAAAACGCTGC
66 AGGTCCTTG-AAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTATAAAAAAACGCTGC
* * *
26544144 AAGCAGGATGCTATATGAGAAGAATTTGTGAAATCTCGCCCACGTGGACGTGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
26544209 AG
66 AG
26544211 CATGTTTGGG
Statistics
Matches: 174, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
123 2 0.01
124 81 0.47
125 15 0.09
126 76 0.44
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (126 bp):
AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
AGGTCCTTGAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTATAAAAAAACGCTGC
Found at i:26547408 original size:21 final size:21
Alignment explanation
Indices: 26547382--26547551 Score: 184
Period size: 21 Copynumber: 8.0 Consensus size: 21
26547372 TCAAATTATA
26547382 TTTAAGTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
*
26547403 TTTAAGTTAAGTGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
* *
26547424 TTT-ATTTAAGGGTT-GCGATT
1 TTTAAGTTAAGGGTTAG-GGTT
* * **
26547444 TTAAAGTTATGGGTTACAGTT
1 TTTAAGTTAAGGGTTAGGGTT
26547465 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGG-TTAGGGTT
** * *
26547487 TAAAAGTTAATGGTTATGGTT
1 TTTAAGTTAAGGGTTAGGGTT
26547508 TTTAAGTTAAGGGTTTAGGG-T
1 TTTAAGTTAAGGG-TTAGGGTT
26547529 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGG-TTAGGGTT
26547551 T
1 T
26547552 AGGGTTTTAA
Statistics
Matches: 121, Mismatches: 22, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
19 1 0.01
20 14 0.12
21 83 0.69
22 23 0.19
ACGTcount: A:0.25, C:0.01, G:0.29, T:0.45
Consensus pattern (21 bp):
TTTAAGTTAAGGGTTAGGGTT
Found at i:26547487 original size:22 final size:22
Alignment explanation
Indices: 26547382--26548215 Score: 379
Period size: 22 Copynumber: 37.0 Consensus size: 22
26547372 TCAAATTATA
26547382 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26547403 TTTAAGTTAAGTG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26547424 TTT-ATTTAAGGG-TT-GCGATT
1 TTTAAGTTAAGGGTTTAG-GGTT
* * **
26547444 TTAAAGTTATGGG-TTACAGTT
1 TTTAAGTTAAGGGTTTAGGGTT
26547465 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
** * *
26547487 TAAAAGTTAATGG-TTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
26547508 TTTAAGTTAAGGGTTTAGGG-T
1 TTTAAGTTAAGGGTTTAGGGTT
26547529 TTTAAGTTAAGGGTTTAGGGTTTAGGGT
1 TTTAAGTTAAGGGTTTAGGG--T----T
* * *
26547557 TTTAAGGTTTTAAGGTTTAAGGTT
1 TTTAA-G-TTAAGGGTTTAGGGTT
* * * **
26547581 TTTAATTTAAAGGTATACTGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26547603 TTTAAGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26547625 TTAAAATTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* ***
26547646 TTTAATTTAAGGG-TTACATTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26547667 TTTAAGTTAAGGTTTTAGGATT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26547689 TTAAAGTTAAGGGTTTAGGATT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26547711 TTAAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26547733 TTTAAGTTAAAGGTTTTAAGG--
1 TTTAAGTT-AAGGGTTTAGGGTT
***** *
26547754 TTTAAGGTTTTTAATTTAAAGGTT
1 TTTAA-GTTAAGGGTTT-AGGGTT
* * *
26547778 TACGGTT--TTTAA--GTTAAAGGTT
1 T----TTAAGTTAAGGGTTTAGGGTT
** ** **
26547800 TAGGATTTTTAAGTTAAGAGTTAGGGTT
1 T-TTA-AGTTAAG----GGTTTAGGGTT
* *
26547828 TTTAATTTAAGGGTTTAAGG-T
1 TTTAAGTTAAGGGTTTAGGGTT
* * ** *
26547849 TTTACGGTTTTACAGTTTAAAGGTT
1 TTTA-AG-TTAAGGGTTT-AGGGTT
* *
26547874 TAGGGTT--TTTAAGTTAGGGTTTAGGGTT
1 T----TTAAGTTAAG---GGTT-TAGGGTT
26547902 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26547924 TTTAAGTTAAGGG-TTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26547945 TTTAATTTATA-GATTTAGGG-T
1 TTTAAGTTA-AGGGTTTAGGGTT
* *
26547966 TTTAAGGTTTTAGGGTTTAAGGTT
1 TTTAA-G-TTAAGGGTTTAGGGTT
* *
26547990 TTTAATTTAACGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26548012 TTTAAGTTAAGCGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26548034 TTTAAGTTAAGGGTTT-TGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26548055 TTTAGGGTTTTAA-GGTTTAAGGTT
1 TTTA-AG--TTAAGGGTTTAGGGTT
* *
26548079 TTTAATTTAAGGGTTT-GAAGTT
1 TTTAAGTTAAGGGTTTAG-GGTT
26548101 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26548123 TTTAAGTTAAGAG-TTAGTGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26548144 TTTAAGTTAAGAGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26548166 TTTAAGTTTAGGGTTAGGGTTAGGGTT
1 TTTAAGTTAAGGG-T----TTAGGGTT
* *
26548193 TTTAGGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
26548215 T
1 T
26548216 GTCAATTAAA
Statistics
Matches: 622, Mismatches: 125, Indels: 131
0.71 0.14 0.15
Matches are distributed among these distances:
19 1 0.00
20 14 0.02
21 185 0.30
22 276 0.44
23 38 0.06
24 31 0.05
25 7 0.01
26 12 0.02
27 19 0.03
28 24 0.04
29 4 0.01
30 11 0.02
ACGTcount: A:0.26, C:0.01, G:0.27, T:0.47
Consensus pattern (22 bp):
TTTAAGTTAAGGGTTTAGGGTT
Found at i:26547509 original size:43 final size:42
Alignment explanation
Indices: 26547382--26548186 Score: 457
Period size: 43 Copynumber: 18.5 Consensus size: 42
26547372 TCAAATTATA
*
26547382 TTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGTGTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAAG-GTTAGGGTT
* * * **
26547424 TTT-ATTTAAGGG-TT-GCGATTTTAAAGTTATGGGTTACAGTT
1 TTTAAGTTAAGGGTTTAG-GGTTTTAAAGTTA-AGGTTAGGGTT
* *
26547465 TTTAAGTTAAGGGTTTAGGGTTTAAAAGTTAATGGTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAA-GGTTAGGGTT
26547508 TTTAAGTTAAGGGTTTAGGGTTTT-AAGTTAAGGGTTTAGGGTTTAGGGT
1 TTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAA-GG-TTAGGG--T----T
* * * **
26547557 TTTAAGGTTTTAA-GGTTTAAGGTTTTTAATTTAAAGGTATACTGTT
1 TTTAA-G--TTAAGGGTTTAGGGTTTTAAAGTT-AAGGT-TAGGGTT
* *
26547603 TTTAAGTTAAGGGTTTAAGGTTTTAAAATTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAA-GGTTAGGGTT
* *** * *
26547646 TTTAATTTAAGGG-TTACATTTTTTAAGTTAAGGTTTTAGGATT
1 TTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAAGG--TTAGGGTT
* *
26547689 TTAAAGTTAAGGGTTTAGGATTTTAAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAA-GG-TTAGGGTT
* * * *
26547733 TTTAAGTTAAAGGTTTTAAGGTTTAAGGTTTTTAATTTAAAGGTTTACGGTT
1 TTTAAGTT-AA-G------GGTTTAGGGTTTTAAAGTT-AAGG-TTAGGGTT
* * *
26547785 TTTAAGTTAAAGGTTTAGGATTTTTAAGTTAAGAGTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAAG-GTTAGGGTT
* * ** **
26547828 TTTAATTTAAGGGTTTAAGGTTTTACGGTT----TTACAG--
1 TTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAAGGTTAGGGTT
* *
26547864 TTT-A---AA-GGTTTAGGGTTTTTAAGTTAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAAGG-TTAGGGTT
* *
26547902 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAA-GGTTAGGGTT
* * * * *
26547945 TTTAATTTATA-GATTTAGGGTTTTAAGGTTTTAGGGTTTAAGGTT
1 TTTAAGTTA-AGGGTTTAGGGTTTTAAAG--TTAAGG-TTAGGGTT
* * * *
26547990 TTTAATTTAACGGTTTAGGGTTTTTAAGTTAAGCGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAAG-G-TTAGGGTT
* * ** *
26548034 TTTAAGTTAAGGGTTTTGGTTTTTAGGGTTTTAAGGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTAAAG--TTAAGG-TTAGGGTT
* * *
26548079 TTTAATTTAAGGGTTT-GAAGTTTTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAG-GGTTTTAAAGTTAA-GG-TTAGGGTT
* * * *
26548123 TTTAAGTTAAGAG-TTAGTGTTTTTAAGTTAAGAGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAAG-G-TTAGGGTT
*
26548166 TTTAAGTTTAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
26548187 AGGGTTTTTA
Statistics
Matches: 606, Mismatches: 97, Indels: 119
0.74 0.12 0.14
Matches are distributed among these distances:
31 15 0.02
32 2 0.00
35 1 0.00
36 7 0.01
38 7 0.01
39 1 0.00
40 1 0.00
41 33 0.05
42 37 0.06
43 222 0.37
44 126 0.21
45 69 0.11
46 12 0.02
49 6 0.01
50 2 0.00
51 15 0.02
52 46 0.08
53 4 0.01
ACGTcount: A:0.26, C:0.01, G:0.26, T:0.47
Consensus pattern (42 bp):
TTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAAGGTTAGGGTT
Found at i:26547529 original size:7 final size:7
Alignment explanation
Indices: 26547517--26547581 Score: 51
Period size: 7 Copynumber: 9.0 Consensus size: 7
26547507 TTTTAAGTTA
26547517 AGGGTTT
1 AGGGTTT
26547524 AGGGTTTT
1 AGGG-TTT
* *
26547532 A-AGTTA
1 AGGGTTT
26547538 AGGGTTT
1 AGGGTTT
26547545 AGGGTTT
1 AGGGTTT
26547552 AGGGTTTT
1 AGGG-TTT
*
26547560 AAGGTTTT
1 -AGGGTTT
*
26547568 AAGGTTT
1 AGGGTTT
*
26547575 AAGGTTT
1 AGGGTTT
26547582 TTAATTTAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
6 3 0.06
7 31 0.66
8 10 0.21
9 3 0.06
ACGTcount: A:0.22, C:0.00, G:0.34, T:0.45
Consensus pattern (7 bp):
AGGGTTT
Found at i:26547565 original size:8 final size:8
Alignment explanation
Indices: 26547514--26547582 Score: 58
Period size: 8 Copynumber: 9.2 Consensus size: 8
26547504 GGTTTTTAAG
*
26547514 TTAAGGGT
1 TTAAGGTT
*
26547522 TTAGGGTT
1 TTAAGGTT
26547530 TTAA-G--
1 TTAAGGTT
*
26547535 TTAAGGGT
1 TTAAGGTT
*
26547543 TT-AGGGT
1 TTAAGGTT
*
26547550 TTAGGGTT
1 TTAAGGTT
26547558 TTAAGGTT
1 TTAAGGTT
26547566 TTAAGG-T
1 TTAAGGTT
26547573 TTAAGGTT
1 TTAAGGTT
26547581 TT
1 TT
26547583 TAATTTAAAG
Statistics
Matches: 50, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
5 4 0.08
6 1 0.02
7 15 0.30
8 30 0.60
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.46
Consensus pattern (8 bp):
TTAAGGTT
Found at i:26547565 original size:15 final size:14
Alignment explanation
Indices: 26547514--26547581 Score: 66
Period size: 14 Copynumber: 4.6 Consensus size: 14
26547504 GGTTTTTAAG
26547514 TTAAGGGTTTAGGGTT
1 TTAA-GGTTTAGGG-T
*
26547530 TTAA-GTTAAGGGT
1 TTAAGGTTTAGGGT
*
26547543 TTAGGGTTTAGGGTT
1 TTAAGGTTTAGGG-T
*
26547558 TTAAGGTTTTAAGGT
1 TTAAGG-TTTAGGGT
26547573 TTAAGGTTT
1 TTAAGGTTT
26547582 TTAATTTAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
13 4 0.09
14 17 0.39
15 13 0.30
16 10 0.23
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.46
Consensus pattern (14 bp):
TTAAGGTTTAGGGT
Found at i:26547582 original size:15 final size:15
Alignment explanation
Indices: 26547514--26547581 Score: 61
Period size: 15 Copynumber: 4.6 Consensus size: 15
26547504 GGTTTTTAAG
*
26547514 TTAAGGGTTTAGGGTT
1 TTAA-GGTTTAAGGTT
*
26547530 TTAA-G-TTAAGGGT
1 TTAAGGTTTAAGGTT
* *
26547543 TTAGGGTTTAGGGTT
1 TTAAGGTTTAAGGTT
26547558 TTAAGGTTTTAAGG-T
1 TTAAGG-TTTAAGGTT
26547573 TTAAGGTTT
1 TTAAGGTTT
26547582 TTAATTTAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
13 9 0.21
14 5 0.12
15 18 0.43
16 10 0.24
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.46
Consensus pattern (15 bp):
TTAAGGTTTAAGGTT
Found at i:26547620 original size:44 final size:44
Alignment explanation
Indices: 26547547--26548215 Score: 519
Period size: 43 Copynumber: 14.8 Consensus size: 44
26547537 AAGGGTTTAG
26547547 GGTTTAGGG-TTTTAAGGTTTTAA-GGTTTAAGGTTTTTAATTTAAA
1 GGTTTAGGGTTTTTAA-G--TTAAGGGTTTAAGGTTTTTAATTTAAA
* ** * *
26547592 GGTATACTGTTTTTAAGTTAAGGGTTTAAGGTTTTAAAATT-AA
1 GGTTTAGGGTTTTTAAGTTAAGGGTTTAAGGTTTTTAATTTAAA
* * * *
26547635 GGGTTAGGGTTTTTAATTTAAGGG-TTACA-TTTTTTAAGTT-AA
1 GGTTTAGGGTTTTTAAGTTAAGGGTTTA-AGGTTTTTAATTTAAA
* * * * *
26547677 GGTTTTAGGATTTTAAAGTTAAGGGTTT-AGGATTTTAAAGTTAAG
1 GG-TTTAGGGTTTTTAAGTTAAGGGTTTAAGG-TTTTTAATTTAAA
26547722 GGTTTAGGGTTTTTAAGTTAAAGGTTTTAAGGTTTAAGGTTTTTAATTTAAA
1 GGTTTAGGGTTTTTAAGTT-AA-G------GGTTTAAGGTTTTTAATTTAAA
* * *
26547774 GGTTTACGGTTTTTAAGTTAAAGGTTT-AGGATTTTTAAGTT-AA
1 GGTTTAGGGTTTTTAAGTTAAGGGTTTAAGG-TTTTTAATTTAAA
*
26547817 GAG-TTAGGGTTTTTAATTTAAGGGTTTAAGGTTTTACGGTTTTACAGTTTAAA
1 G-GTTTAGGGTTTTTAAGTTAAGGGTTTAAGG---T----TTTTA-A-TTTAAA
* * *
26547870 GGTTTAGGGTTTTTAAGTT-AGGGTTTAGGGTTTTTAAGTTAAG
1 GGTTTAGGGTTTTTAAGTTAAGGGTTTAAGGTTTTTAATTTAAA
*
26547913 GGTTTAGGGTTTTTAAGTTAAGGG-TTAAGGTTTTTAATTTATA
1 GGTTTAGGGTTTTTAAGTTAAGGGTTTAAGGTTTTTAATTTAAA
* * *
26547956 GATTTAGGG-TTTTAAGGTTTTAGGGTTTAAGGTTTTTAATTTAAC
1 GGTTTAGGGTTTTTAA-G-TTAAGGGTTTAAGGTTTTTAATTTAAA
* * * *
26548001 GGTTTAGGGTTTTTAAGTTAAGCGTTTATGGTTTTTAAGTTAAG
1 GGTTTAGGGTTTTTAAGTTAAGGGTTTAAGGTTTTTAATTTAAA
* * *
26548045 GGTTT-TGGTTTTTAGGGTTTTAA-GGTTTAAGGTTTTTAATTTAAG
1 GGTTTAGGGTTTTTA-AG--TTAAGGGTTTAAGGTTTTTAATTTAAA
* * *
26548090 GGTTT-GAAGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTT-AA
1 GGTTTAG-GGTTTTTAAGTTAAGGGTTTAAGGTTTTTAATTTAAA
* * *
26548133 GAG-TTAGTGTTTTTAAGTTAAGAGTTTAAGGTTTTTAAGTTTAGGGTTA
1 G-GTTTAGGGTTTTTAAGTTAAGGGTTTAAGGTTTTTAA-TTTA----AA
* *
26548182 GGGTTAGGGTTTTTAGGTTAAGGGTTTAAGGTTT
1 GGTTTAGGGTTTTTAAGTTAAGGGTTTAAGGTTT
26548216 GTCAATTAAA
Statistics
Matches: 505, Mismatches: 70, Indels: 94
0.75 0.10 0.14
Matches are distributed among these distances:
42 22 0.04
43 162 0.32
44 121 0.24
45 68 0.13
46 25 0.05
48 1 0.00
49 31 0.06
50 5 0.01
51 3 0.01
52 46 0.09
53 21 0.04
ACGTcount: A:0.26, C:0.01, G:0.26, T:0.47
Consensus pattern (44 bp):
GGTTTAGGGTTTTTAAGTTAAGGGTTTAAGGTTTTTAATTTAAA
Found at i:26547737 original size:117 final size:114
Alignment explanation
Indices: 26547612--26548186 Score: 482
Period size: 117 Copynumber: 5.1 Consensus size: 114
26547602 TTTTAAGTTA
* * **
26547612 AGGG-TTTAAGGTTTTAAAATTAAGGGTTAGGGTTTTTAATTTAAGGGTTACATTTTTTAAGTTA
1 AGGGTTTTAAGGTTTTAAATTTAAGGTTTAGGGTTTTTAATTTAAGGGTTACGGTTTTTAAGTTA
* * *
26547676 AGGTTTTAGGATTTTAAAGTTAAGGGTTTAGGATTTTAAAGTTAAGGGTTT
66 AGG-TTTAGGATTTTTAAGTTAAGGGTTTAGG-TTTTTAATTTAAGGGTTT
* *
26547727 AGGGTTTTTAA-G--TTAAAGGTTTTAAGGTTTAAGGTTTTTAATTTAAAGGTTTACGGTTTTTA
1 AGGG-TTTTAAGGTTTTAAA---TTTAAGGTTTAGGGTTTTTAATTT-AAGGGTTACGGTTTTTA
*
26547789 AGTTAAAGGTTTAGGATTTTTAAGTTAAGAG-TTAGGGTTTTTAATTTAAGGGTTT
61 AGTT-AAGGTTTAGGATTTTTAAGTTAAGGGTTTA-GGTTTTTAATTTAAGGGTTT
* * * * *
26547844 AAGGTTTTACGGTTTTACAGTTTAAAGGTTTAGGGTTTTTAAGTT-AGGGTTTAGGGTTTTTAAG
1 AGGGTTTTAAGGTTTTA-AATTT-AAGGTTTAGGGTTTTTAATTTAAGGG-TTACGGTTTTTAAG
* * *
26547908 TTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAAGGTTTTTAATTTATA-GATTT
63 TTAA-GGTTTAGGATTTTTAAGTTAAGGGTTTAGGTTTTTAATTTA-AGGGTTT
* * * *
26547961 AGGGTTTTAAGG---T---TTTAGGGTTTAAGGTTTTTAATTTAACGGTTTAGGGTTTTTAAGTT
1 AGGGTTTTAAGGTTTTAAATTTAAGGTTTAGGGTTTTTAATTTAA-GGGTTACGGTTTTTAAGTT
*
26548020 AAGCGTTTATGG-TTTTTAAGTTAAGGGTTTTGG---TT--TTT-AGGGTTTT
65 AAG-GTTTA-GGATTTTTAAGTTAAGGGTTTAGGTTTTTAATTTAAGGG-TTT
* * * * *
26548066 AAGG-TTTAAGGTTTTTAATTTAAGGGTTT-GAAGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAG
1 AGGGTTTTAAGGTTTTAAATTTAA-GGTTTAG-GGTTTTTAATTTAAGGG-TTACGGTTTTTAAG
*
26548129 TTAAGAG-TTAGTG-TTTTTAAGTTAAGAGTTTAAGGTTTTTAAGTTT-AGGG-TT
63 TTAAG-GTTTAG-GATTTTTAAGTTAAGGGTTT-AGGTTTTTAA-TTTAAGGGTTT
26548181 AGGGTT
1 AGGGTT
26548187 AGGGTTTTTA
Statistics
Matches: 379, Mismatches: 40, Indels: 81
0.76 0.08 0.16
Matches are distributed among these distances:
103 1 0.00
104 8 0.02
105 9 0.02
107 3 0.01
109 20 0.05
110 73 0.19
111 43 0.11
114 8 0.02
115 9 0.02
116 12 0.03
117 123 0.32
118 62 0.16
119 7 0.02
120 1 0.00
ACGTcount: A:0.26, C:0.01, G:0.26, T:0.47
Consensus pattern (114 bp):
AGGGTTTTAAGGTTTTAAATTTAAGGTTTAGGGTTTTTAATTTAAGGGTTACGGTTTTTAAGTTA
AGGTTTAGGATTTTTAAGTTAAGGGTTTAGGTTTTTAATTTAAGGGTTT
Found at i:26547749 original size:15 final size:15
Alignment explanation
Indices: 26547729--26547778 Score: 66
Period size: 15 Copynumber: 3.3 Consensus size: 15
26547719 AAGGGTTTAG
26547729 GGTTTTTAAGTTAAA
1 GGTTTTTAAGTTAAA
*
26547744 GG-TTTTAAGGTTTAA
1 GGTTTTTAA-GTTAAA
*
26547759 GGTTTTTAATTTAAA
1 GGTTTTTAAGTTAAA
26547774 GGTTT
1 GGTTT
26547779 ACGGTTTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
14 6 0.20
15 18 0.60
16 6 0.20
ACGTcount: A:0.28, C:0.00, G:0.22, T:0.50
Consensus pattern (15 bp):
GGTTTTTAAGTTAAA
Found at i:26547763 original size:30 final size:31
Alignment explanation
Indices: 26547717--26547778 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 31
26547707 GATTTTAAAG
*
26547717 TTAAGGGTTTAGGGTTTTTAAGTTAAAGGTT
1 TTAAGGGTTTAAGGTTTTTAAGTTAAAGGTT
*
26547748 TTAA-GGTTTAAGGTTTTTAATTTAAAGGTT
1 TTAAGGGTTTAAGGTTTTTAAGTTAAAGGTT
26547778 T
1 T
26547779 ACGGTTTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 25 0.86
31 4 0.14
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.48
Consensus pattern (31 bp):
TTAAGGGTTTAAGGTTTTTAAGTTAAAGGTT
Found at i:26547832 original size:74 final size:73
Alignment explanation
Indices: 26547695--26548215 Score: 277
Period size: 74 Copynumber: 7.5 Consensus size: 73
26547685 GATTTTAAAG
* * * *
26547695 TTAAGGGTTTA-GGATTTTAAAGTTAAGGGTTTAGGGTTTTTAAGTTAA-AGGTTTTAAGG--TT
1 TTAAAGGTTTACGG-TTTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGA-G-TTTAGGGTTTT
26547756 TAAGGTTTTTAA-T
63 TAA-G--TTTAAGT
*
26547769 TTAAAGGTTTACGGTTTTTAAGTTAAAGGTTTAGGATTTTTAAGTTAAGAG-TTAGGGTTTTTAA
1 TTAAAGGTTTACGGTTTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGAGTTTAGGGTTTTTAA
26547833 -TTTAAGGGT
66 GTTTAA--GT
*
26547842 TT-AAGGTTTTACGG-TTTTACAGTTTAAAGGTTTAGGGTTTTTAAGTT-AGGGTTTAGGGTTTT
1 TTAAAGG-TTTACGGTTTTTA-AG-TTAAAGGTTTAGGGTTTTTAAGTTAAGAGTTTAGGGTTTT
26547904 TAAG-TTAAG-
63 TAAGTTTAAGT
* * * *
26547913 -----GGTTTAGGGTTTTTAAGTT-AAGGGTTAAGGTTTTTAATTTATAGA-TTTAGGG-TTTTA
1 TTAAAGGTTTACGGTTTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTA-AGAGTTTAGGGTTTTTA
26547970 AG-----GT
65 AGTTTAAGT
* * * * * * *
26547974 TTTAGGGTTTAAGGTTTTTAATTTAACGGTTTAGGGTTTTTAAGTTAAGCGTTTATGGTTTTTAA
1 TTAAAGGTTTACGGTTTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGAGTTTAGGGTTTTTAA
26548039 G-TTAAG-
66 GTTTAAGT
* * * * * * *
26548045 -----GGTTT-TGGTTTTTAGGGTTTTAAGGTTTAAGGTTTTTAATTTAAGGGTTT-GAAGTTTT
1 TTAAAGGTTTACGGTTTTTA-AG-TTAAAGGTTTAGGGTTTTTAAGTTAAGAGTTTAG-GGTTTT
26548103 TAAG-TTAAG-
63 TAAGTTTAAGT
* * *
26548112 -----GGTTTAGGGTTTTTAAGTT-AAGAG-TTAGTGTTTTTAAGTTAAGAGTTTAAGGTTTTTA
1 TTAAAGGTTTACGGTTTTTAAGTTAAAG-GTTTAGGGTTTTTAAGTTAAGAGTTTAGGGTTTTTA
* *
26548170 AGTTTAGGG
65 AGTTTAAGT
* * * * *
26548179 TT--AGGGTTAGGGTTTTTAGGTTAAGGGTTTAAGGTTT
1 TTAAAGGTTTACGGTTTTTAAGTTAAAGGTTTAGGGTTT
26548216 GTCAATTAAA
Statistics
Matches: 362, Mismatches: 44, Indels: 85
0.74 0.09 0.17
Matches are distributed among these distances:
60 1 0.00
64 25 0.07
65 49 0.14
66 41 0.11
67 78 0.22
68 15 0.04
70 23 0.06
71 9 0.02
72 16 0.04
73 15 0.04
74 87 0.24
75 3 0.01
ACGTcount: A:0.25, C:0.01, G:0.27, T:0.47
Consensus pattern (73 bp):
TTAAAGGTTTACGGTTTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGAGTTTAGGGTTTTTAA
GTTTAAGT
Found at i:26547993 original size:16 final size:16
Alignment explanation
Indices: 26547958--26547991 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
26547948 AATTTATAGA
26547958 TTTAGGGTTTTAAGGT
1 TTTAGGGTTTTAAGGT
26547974 TTTAGGG-TTTAAGGT
1 TTTAGGGTTTTAAGGT
26547989 TTT
1 TTT
26547992 TAATTTAACG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.18, C:0.00, G:0.29, T:0.53
Consensus pattern (16 bp):
TTTAGGGTTTTAAGGT
Found at i:26548082 original size:89 final size:87
Alignment explanation
Indices: 26547748--26548215 Score: 382
Period size: 89 Copynumber: 5.2 Consensus size: 87
26547738 GTTAAAGGTT
* * * *
26547748 TTAAGGTTTAAGGTTTTTAATTTAAAGGTTTACGGTTTTTAAG-TTAAAGGTTT-AGGATTTTTA
1 TTAAGGTTTAAGGTTTTTAAGTTAAGGGTTTA-GGTTTTTAGGTTTTAAGGTTTAAGG-TTTTTA
* * *
26547811 AGTTAAGAG-TTAGGGTTTTTAAT
64 ATTTAAGGGTTTAGGGTTTTTAAG
* * *
26547834 TTAAGGGTTTAAGGTTTTACGGTTTTACAGTTTAAAGGTTTAGGGTTTTTAAG--TTAGGGTTTA
1 TTAA-GGTTTAAGG---T----TTTTA-AG-TTAAGGGTTTA-GGTTTTTAGGTTTTAAGGTTTA
* *
26547897 GGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAG
55 AGGTTTTTAATTTAAGGGTTTAGGGTTTTTAAG
* * * * *
26547930 TTAAGGGTTAAGGTTTTTAATTTATA-GATTTAGGGTTTTAAGGTTTTAGGGTTTAAGGTTTTTA
1 TTAAGGTTTAAGGTTTTTAAGTTA-AGGGTTTA-GGTTTTTAGGTTTTAAGGTTTAAGGTTTTTA
*
26547994 ATTTAACGGTTTAGGGTTTTTAAG
64 ATTTAAGGGTTTAGGGTTTTTAAG
* *
26548018 TTAAGCGTTTATGGTTTTTAAGTTAAGGGTTTTGGTTTTTAGGGTTTTAAGGTTTAAGGTTTTTA
1 TTAAG-GTTTAAGGTTTTTAAGTTAAGGGTTTAGGTTTTTA-GGTTTTAAGGTTTAAGGTTTTTA
*
26548083 ATTTAAGGGTTT-GAAGTTTTTAAG
64 ATTTAAGGGTTTAG-GGTTTTTAAG
* * *
26548107 TTAAGGGTTTAGGGTTTTTAAGTTAAGAG-TTAGTGTTTTTAAG--TTAAGAGTTTAAGGTTTTT
1 TTAA-GGTTTAAGGTTTTTAAGTTAAGGGTTTAG-GTTTTTAGGTTTTAAG-GTTTAAGGTTTTT
*
26548169 AAGTTT-AGGGTTAGGGTTAGGGTTTTTAGG
63 AA-TTTAAGGG-T----TTAGGGTTTTTAAG
26548199 TTAAGGGTTTAAGGTTT
1 TTAA-GGTTTAAGGTTT
26548216 GTCAATTAAA
Statistics
Matches: 322, Mismatches: 31, Indels: 52
0.80 0.08 0.13
Matches are distributed among these distances:
86 26 0.08
87 30 0.09
88 67 0.21
89 94 0.29
90 2 0.01
92 27 0.08
93 1 0.00
94 5 0.02
95 30 0.09
96 40 0.12
ACGTcount: A:0.25, C:0.01, G:0.27, T:0.48
Consensus pattern (87 bp):
TTAAGGTTTAAGGTTTTTAAGTTAAGGGTTTAGGTTTTTAGGTTTTAAGGTTTAAGGTTTTTAAT
TTAAGGGTTTAGGGTTTTTAAG
Found at i:26548264 original size:9 final size:8
Alignment explanation
Indices: 26548242--26548267 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
26548232 ATTTAATTAT
26548242 AATTTTTA
1 AATTTTTA
26548250 AATTTTTA
1 AATTTTTA
26548258 AATTTTTA
1 AATTTTTA
26548266 AA
1 AA
26548268 AAAAATTAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (8 bp):
AATTTTTA
Found at i:26548496 original size:21 final size:21
Alignment explanation
Indices: 26548458--26548498 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
26548448 TTATCCAGCT
* *
26548458 TCCGGCGGCGGTTGTGGTTCC
1 TCCGGCGGCGATTCTGGTTCC
*
26548479 TCCGGCGGTGATTCTGGTTC
1 TCCGGCGGCGATTCTGGTTC
26548499 TTCCAGTAGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.02, C:0.27, G:0.39, T:0.32
Consensus pattern (21 bp):
TCCGGCGGCGATTCTGGTTCC
Found at i:26548785 original size:18 final size:18
Alignment explanation
Indices: 26548759--26548801 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
26548749 AACTCGAAAA
* *
26548759 AGGAAACATATAAGGGTT
1 AGGAAACATAAAAGGGCT
*
26548777 AGGATACATAAAAGGGCT
1 AGGAAACATAAAAGGGCT
26548795 AGGAAAC
1 AGGAAAC
26548802 GCACCTGGCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.47, C:0.09, G:0.28, T:0.16
Consensus pattern (18 bp):
AGGAAACATAAAAGGGCT
Found at i:26549680 original size:20 final size:20
Alignment explanation
Indices: 26549643--26549680 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
26549633 TTTATTTTTA
*
26549643 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
26549663 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
26549681 TATCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:26550602 original size:51 final size:51
Alignment explanation
Indices: 26550547--26550644 Score: 126
Period size: 51 Copynumber: 1.9 Consensus size: 51
26550537 AATTATTTAA
*
26550547 AAATAGGGATTTAAGAGAAATTTA-AGAGGAACTTGAGAGCAAATTGAAATT
1 AAATAGGGATTTAAGAGAAAATTAGA-AGGAACTTGAGAGCAAATTGAAATT
* * * * *
26550598 AAATATGGATTTGAGAGAAAATTGGAAGGAATTTGAGAGTAAATTGA
1 AAATAGGGATTTAAGAGAAAATTAGAAGGAACTTGAGAGCAAATTGA
26550645 GAGGAAATTT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
51 39 0.98
52 1 0.03
ACGTcount: A:0.46, C:0.02, G:0.26, T:0.27
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAAATTAGAAGGAACTTGAGAGCAAATTGAAATT
Found at i:26550631 original size:22 final size:23
Alignment explanation
Indices: 26550606--26550665 Score: 79
Period size: 22 Copynumber: 2.7 Consensus size: 23
26550596 TTAAATATGG
26550606 ATTTGAGAGAAAATTG-GAAGG-A
1 ATTTGAGAGAAAATTGAG-AGGAA
*
26550628 ATTTGAGAGTAAATTGAGAGGAA
1 ATTTGAGAGAAAATTGAGAGGAA
*
26550651 ATTTGAAAGAAAATT
1 ATTTGAGAGAAAATT
26550666 AGTTTGTGGA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
22 18 0.55
23 15 0.45
ACGTcount: A:0.47, C:0.00, G:0.27, T:0.27
Consensus pattern (23 bp):
ATTTGAGAGAAAATTGAGAGGAA
Found at i:26550664 original size:12 final size:12
Alignment explanation
Indices: 26550606--26550665 Score: 54
Period size: 12 Copynumber: 5.2 Consensus size: 12
26550596 TTAAATATGG
26550606 ATTTGAGAGAAA
1 ATTTGAGAGAAA
* *
26550618 ATTGGA-AG-GA
1 ATTTGAGAGAAA
*
26550628 ATTTGAGAGTAA
1 ATTTGAGAGAAA
*
26550640 A-TTGAGAGGAA
1 ATTTGAGAGAAA
*
26550651 ATTTGAAAGAAA
1 ATTTGAGAGAAA
26550663 ATT
1 ATT
26550666 AGTTTGTGGA
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
10 6 0.16
11 14 0.37
12 18 0.47
ACGTcount: A:0.47, C:0.00, G:0.27, T:0.27
Consensus pattern (12 bp):
ATTTGAGAGAAA
Found at i:26554967 original size:13 final size:13
Alignment explanation
Indices: 26554949--26554973 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26554939 CTGAAACGAG
26554949 TTAGGGATTTCAC
1 TTAGGGATTTCAC
26554962 TTAGGGATTTCA
1 TTAGGGATTTCA
26554974 GATCAGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.40
Consensus pattern (13 bp):
TTAGGGATTTCAC
Found at i:26555913 original size:7 final size:7
Alignment explanation
Indices: 26555901--26555932 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
26555891 CATTAGACCT
26555901 TAAACCC
1 TAAACCC
26555908 TAAACCC
1 TAAACCC
26555915 TAAACCC
1 TAAACCC
*
26555922 TTAACCC
1 TAAACCC
26555929 TAAA
1 TAAA
26555933 TTGACTTGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.44, C:0.38, G:0.00, T:0.19
Consensus pattern (7 bp):
TAAACCC
Found at i:26556163 original size:21 final size:21
Alignment explanation
Indices: 26556122--26556163 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
26556112 ACCCTTAAAC
*
26556122 CCCTAAACCTCTAACCCTTAA
1 CCCTAAACCTCTAAACCTTAA
*
26556143 CCCTAAACACT-TAAACTTTAA
1 CCCTAAAC-CTCTAAACCTTAA
26556164 ACCTCAACTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.26
Consensus pattern (21 bp):
CCCTAAACCTCTAAACCTTAA
Found at i:26556259 original size:14 final size:14
Alignment explanation
Indices: 26556239--26556271 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
26556229 TAAAACATAT
26556239 ATAAACCCTAAATC
1 ATAAACCCTAAATC
*
26556253 CTAAACCCTAAATC
1 ATAAACCCTAAATC
26556267 ATAAA
1 ATAAA
26556272 ACATATATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.52, C:0.27, G:0.00, T:0.21
Consensus pattern (14 bp):
ATAAACCCTAAATC
Found at i:26557128 original size:177 final size:178
Alignment explanation
Indices: 26556820--26557158 Score: 511
Period size: 177 Copynumber: 1.9 Consensus size: 178
26556810 AACAAAAAAC
* * *
26556820 GACGGCGTATGCTTAAAACTTTTTGCGGCGCTTCGTCTGAAGTGCCGCTAAAGATTGACTTCAGC
1 GACGGCGTATGCTTAAAACATTTTGCGGCGCTTCCTCTGAAGCGCCGCTAAAGATTGACTTCAGC
**
26556885 GGCGATTTCTTTAAAGCGCCACTATTGTGCCTAAAACTCAACAAGAAAATGACGTCGTTCGGT-A
66 GGCGATTTCTTTAAAGCGCCACTATTGTGCCTAAAACTCAACAAGAAAACAACGTCGTTCGGTAA
* * *
26556949 AAATCTTTTGTGGCGCTTCAGGAAAGCGCCGCCACTATTGTCCCTAAA
131 AAAACTTTTGTGGCACTTCAGGAAAACGCCGCCACTATTGTCCCTAAA
*
26556997 GACGGCGTATGCTTAAAACATTTT-CTGGCGCTTCCTCTGAAGCGCCGCTAATGATTGACTTCAG
1 GACGGCGTATGCTTAAAACATTTTGC-GGCGCTTCCTCTGAAGCGCCGCTAAAGATTGACTTCAG
* * * * *
26557061 TGGCGCTTTCTTTAAAGCGCCACTATTGTGTCTAAAACTCAACAAGAAAACAAGGTCGTTTGGTA
65 CGGCGATTTCTTTAAAGCGCCACTATTGTGCCTAAAACTCAACAAGAAAACAACGTCGTTCGGTA
**
26557126 AAAAACTTTTGTGGCACTTTGGGAAAACGCCGC
130 AAAAACTTTTGTGGCACTTCAGGAAAACGCCGC
26557159 TAATACATGA
Statistics
Matches: 144, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
176 1 0.01
177 115 0.80
178 28 0.19
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (178 bp):
GACGGCGTATGCTTAAAACATTTTGCGGCGCTTCCTCTGAAGCGCCGCTAAAGATTGACTTCAGC
GGCGATTTCTTTAAAGCGCCACTATTGTGCCTAAAACTCAACAAGAAAACAACGTCGTTCGGTAA
AAAACTTTTGTGGCACTTCAGGAAAACGCCGCCACTATTGTCCCTAAA
Found at i:26559021 original size:23 final size:24
Alignment explanation
Indices: 26558994--26559041 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
26558984 ATTCGTTTAT
* *
26558994 ATGTTTGCAAACATTAAA-CAAAC
1 ATGTTTACAAACAGTAAATCAAAC
*
26559017 ATGTTTACAAATAGTAAATCAAAC
1 ATGTTTACAAACAGTAAATCAAAC
26559041 A
1 A
26559042 AGCGAACAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.50, C:0.15, G:0.08, T:0.27
Consensus pattern (24 bp):
ATGTTTACAAACAGTAAATCAAAC
Found at i:26559952 original size:15 final size:15
Alignment explanation
Indices: 26559932--26559961 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26559922 TCTTTTTGGC
*
26559932 CGATTTGCTTTCTGT
1 CGATTTGCTCTCTGT
26559947 CGATTTGCTCTCTGT
1 CGATTTGCTCTCTGT
26559962 TTTACCCTCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.23, G:0.20, T:0.50
Consensus pattern (15 bp):
CGATTTGCTCTCTGT
Found at i:26561015 original size:19 final size:19
Alignment explanation
Indices: 26560991--26561027 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
26560981 GCATGACCTC
26560991 TATATGCACCTGAACGATG
1 TATATGCACCTGAACGATG
*
26561010 TATATGTACCTGAACGAT
1 TATATGCACCTGAACGAT
26561028 AATATTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (19 bp):
TATATGCACCTGAACGATG
Found at i:26563069 original size:18 final size:17
Alignment explanation
Indices: 26563043--26563077 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26563033 AATATTAAGA
*
26563043 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26563060 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26563078 TTAATAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26563089 original size:120 final size:120
Alignment explanation
Indices: 26562936--26563219 Score: 446
Period size: 120 Copynumber: 2.4 Consensus size: 120
26562926 TAATTGAAAA
* * *
26562936 TATATATTTT-ATTAAATTATATTTAATAATAATTATGTTAAATTATATTTCATAGTATTATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATA
* *
26563000 TTATGATTTTAGAAAATTCATATAAGAATATTTAA-TATTAAGAATTTTATTAAAT
66 TTATGATTTCAGAAAATTAATATAAGAATA-TTAATTATTAAGAATTTTATTAAAT
* * *
26563055 TATATATTTTAATTAAAATATATTTAATAGTAATTATGTTAATTTATATTTTACAGTATCATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATA
*
26563120 TTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
66 TTATGATTTCAGAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
*
26563175 TATATATTTTAATTAAAATATATTTAATAAAAATTATGTTTAAAT
1 TATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
26563220 ATGATTAAAT
Statistics
Matches: 150, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
119 14 0.09
120 131 0.87
121 5 0.03
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (120 bp):
TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATA
TTATGATTTCAGAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
Found at i:26563191 original size:18 final size:17
Alignment explanation
Indices: 26563163--26563197 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26563153 ATTATTAAGA
*
26563163 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26563180 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26563198 TTAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26563197 original size:16 final size:16
Alignment explanation
Indices: 26563163--26563217 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
26563153 ATTATTAAGA
26563163 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
26563180 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
26563196 A-TTTAATAAAAAT-T
1 ATTTTAATTAAAATAT
26563210 ATGTTTAA
1 AT-TTTAA
26563218 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:26563454 original size:16 final size:16
Alignment explanation
Indices: 26563433--26563500 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
26563423 GATTTGCTAT
*
26563433 TACACCTCTAATCTAA
1 TACACCTCTAATCCAA
*
26563449 TACACCTTTAATCCAA
1 TACACCTCTAATCCAA
26563465 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
26563481 TACACCTCTAATTCAA
1 TACACCTCTAATCCAA
26563497 TACA
1 TACA
26563501 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.38, C:0.32, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:26567257 original size:21 final size:21
Alignment explanation
Indices: 26567219--26567265 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
26567209 AATCAGACTC
* *
26567219 TAAATTTTTTTAAAAATAT-A
1 TAAATATTTTAAAAAATATAA
26567239 TAAATATTTTAAAATAATATAA
1 TAAATATTTTAAAA-AATATAA
26567261 TAAAT
1 TAAAT
26567266 TTGAATTCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 12 0.52
21 5 0.22
22 6 0.26
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TAAATATTTTAAAAAATATAA
Found at i:26567318 original size:5 final size:5
Alignment explanation
Indices: 26567308--26567355 Score: 69
Period size: 5 Copynumber: 9.2 Consensus size: 5
26567298 TAAAAAAAGG
*
26567308 CCCTC CCCTC CCCTC CCCTC CCCTC CCCTC CCCAC CCCGTC CCTCTC C
1 CCCTC CCCTC CCCTC CCCTC CCCTC CCCTC CCCTC CCC-TC CC-CTC C
26567356 TTCTTCCTCT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
5 32 0.82
6 6 0.15
7 1 0.03
ACGTcount: A:0.02, C:0.77, G:0.02, T:0.19
Consensus pattern (5 bp):
CCCTC
Found at i:26567664 original size:11 final size:10
Alignment explanation
Indices: 26567649--26567678 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
26567639 TTTTTTGAAA
26567649 ATTTTTATAT
1 ATTTTTATAT
26567659 ATTTTTATAT
1 ATTTTTATAT
26567669 ATTTTT-TAT
1 ATTTTTATAT
26567678 A
1 A
26567679 ACGTTTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 4 0.20
10 16 0.80
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
ATTTTTATAT
Found at i:26573780 original size:18 final size:18
Alignment explanation
Indices: 26573733--26573780 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 18
26573723 TAAACCAACA
* *
26573733 ATAATTAAATAAATAATT
1 ATAAATAAATAAAAAATT
* **
26573751 AAAAATTCATAAAAAATT
1 ATAAATAAATAAAAAATT
26573769 ATAAATAAATAA
1 ATAAATAAATAA
26573781 TTTTATTAAA
Statistics
Matches: 22, Mismatches: 8, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (18 bp):
ATAAATAAATAAAAAATT
Found at i:26584982 original size:2 final size:2
Alignment explanation
Indices: 26584975--26585000 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
26584965 CTCAACTCCT
26584975 AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC
26585001 TCACTCTCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:26585009 original size:2 final size:2
Alignment explanation
Indices: 26585004--26585034 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
26584994 CACACACTCA
26585004 CT CT CT CT CT CT CT CT CT CT CT CT C- CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
26585035 TTGCTTTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:26588847 original size:17 final size:17
Alignment explanation
Indices: 26588825--26588882 Score: 62
Period size: 17 Copynumber: 3.4 Consensus size: 17
26588815 AAAGAAGCCC
26588825 TTAAATTATTTTTATAG
1 TTAAATTATTTTTATAG
* * * **
26588842 TTAAATAAGTATCTATCT
1 TTAAATTA-TTTTTATAG
26588860 TTAAATTATTTTTATAG
1 TTAAATTATTTTTATAG
26588877 TTAAAT
1 TTAAAT
26588883 AAGCATCTAT
Statistics
Matches: 30, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
17 18 0.60
18 12 0.40
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.53
Consensus pattern (17 bp):
TTAAATTATTTTTATAG
Found at i:26588871 original size:35 final size:35
Alignment explanation
Indices: 26588825--26588895 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
26588815 AAAGAAGCCC
*
26588825 TTAAATTATTTTTATAGTTAAATAAGTATCTATCT
1 TTAAATTATTTTTATAGTTAAATAAGCATCTATCT
26588860 TTAAATTATTTTTATAGTTAAATAAGCATCTATCT
1 TTAAATTATTTTTATAGTTAAATAAGCATCTATCT
26588895 T
1 T
26588896 ATGATCTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.07, G:0.06, T:0.51
Consensus pattern (35 bp):
TTAAATTATTTTTATAGTTAAATAAGCATCTATCT
Found at i:26589610 original size:19 final size:20
Alignment explanation
Indices: 26589586--26589624 Score: 62
Period size: 19 Copynumber: 1.9 Consensus size: 20
26589576 CATATTTAAA
26589586 TTGATAAAA-TAAATTATTT
1 TTGATAAAATTAAATTATTT
26589605 TTGATAAAATTTAAATTATT
1 TTGATAAAA-TTAAATTATT
26589625 GAATCCTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.50
21 9 0.50
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (20 bp):
TTGATAAAATTAAATTATTT
Found at i:26589739 original size:27 final size:27
Alignment explanation
Indices: 26589686--26589763 Score: 81
Period size: 26 Copynumber: 2.9 Consensus size: 27
26589676 GATACTTATT
26589686 TTTTAATCCTATTTTTATTAAAATAATA
1 TTTTAAT-CTATTTTTATTAAAATAATA
*
26589714 TTTTAAT-TATTTTTATTACAACTAATA
1 TTTTAATCTATTTTTATTA-AAATAATA
*
26589741 --TTAATGTATTTTTAAATTAAAAT
1 TTTTAATCTATTTTT--ATTAAAAT
26589764 TAATTAATTA
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
25 5 0.11
26 18 0.41
27 10 0.23
28 11 0.25
ACGTcount: A:0.40, C:0.05, G:0.01, T:0.54
Consensus pattern (27 bp):
TTTTAATCTATTTTTATTAAAATAATA
Found at i:26589790 original size:16 final size:16
Alignment explanation
Indices: 26589747--26589804 Score: 68
Period size: 16 Copynumber: 3.8 Consensus size: 16
26589737 AATATTAATG
26589747 TATTT-TTAAATTAAA
1 TATTTATTAAATTAAA
* *
26589762 -ATTAATT-AATTAAT
1 TATTTATTAAATTAAA
*
26589776 TTTTTATTAAATTAAA
1 TATTTATTAAATTAAA
26589792 TATTTATTAAATT
1 TATTTATTAAATT
26589805 TATCTATTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
14 9 0.26
15 7 0.21
16 18 0.53
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TATTTATTAAATTAAA
Found at i:26593014 original size:22 final size:22
Alignment explanation
Indices: 26592989--26593083 Score: 73
Period size: 22 Copynumber: 4.3 Consensus size: 22
26592979 TACTATGCGG
*
26592989 ACCCTACATGTTATTTATGTGA
1 ACCCTACATGTTATATATGTGA
* * * **
26593011 ACCCAATATGTTTAAATATACGA
1 ACCCTACATG-TTATATATGTGA
* * * *
26593034 ACCCTATATATTGTTTATGTGA
1 ACCCTACATGTTATATATGTGA
**
26593056 ACCCTACATGTGGTATATGTGA
1 ACCCTACATGTTATATATGTGA
26593078 ACCCTA
1 ACCCTA
26593084 TTTATTGATT
Statistics
Matches: 55, Mismatches: 17, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
22 39 0.71
23 16 0.29
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (22 bp):
ACCCTACATGTTATATATGTGA
Found at i:26593096 original size:22 final size:21
Alignment explanation
Indices: 26593032--26593096 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
26593022 TTAAATATAC
*
26593032 GAACCCTATATATTGTTTATGT
1 GAACCCTAT-TATTGATTATGT
* *
26593054 GAACCCTA-CATGTGGTATATGT
1 GAACCCTATTAT-TGAT-TATGT
26593076 GAACCCTATTTATTGATTATG
1 GAACCCTA-TTATTGATTATG
26593097 CAAACTATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
20 2 0.06
21 3 0.09
22 25 0.71
23 3 0.09
24 2 0.06
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (21 bp):
GAACCCTATTATTGATTATGT
Found at i:26593157 original size:14 final size:14
Alignment explanation
Indices: 26593138--26593181 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
26593128 AACCTTAGAT
26593138 GTGCGAACCCCTAG
1 GTGCGAACCCCTAG
*
26593152 GTGCGAACCCAC-AT
1 GTGCGAACCC-CTAG
26593166 GTGCGAA-CCCTAG
1 GTGCGAACCCCTAG
26593179 GTG
1 GTG
26593182 TGTACCCTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 1 0.04
13 6 0.23
14 18 0.69
15 1 0.04
ACGTcount: A:0.23, C:0.32, G:0.30, T:0.16
Consensus pattern (14 bp):
GTGCGAACCCCTAG
Found at i:26593188 original size:27 final size:28
Alignment explanation
Indices: 26593124--26593205 Score: 94
Period size: 28 Copynumber: 2.9 Consensus size: 28
26593114 CCCTAATGCA
* *
26593124 TGCGAACCTTAGATGTGCGAACCCCTAGG
1 TGCGAACCCTACATGTGCGAA-CCCTAGG
26593153 TGCGAACCC-ACATGTGCGAACCCTAGG
1 TGCGAACCCTACATGTGCGAACCCTAGG
* * * *
26593180 TGTGTACCCTATATATGCGAACCCTA
1 TGCGAACCCTACATGTGCGAACCCTA
26593206 TTTATGTATG
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 14 0.30
28 24 0.52
29 8 0.17
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (28 bp):
TGCGAACCCTACATGTGCGAACCCTAGG
Found at i:26594597 original size:28 final size:28
Alignment explanation
Indices: 26594556--26594613 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
26594546 AGTAAGTCTT
*
26594556 TATTCAGTCCGAAGAATCAGATGTTAGG
1 TATTCAGTCCGAAGAATCAGATGTCAGG
*
26594584 TATTCAGTCTGAAGAATCAGATGTCAGG
1 TATTCAGTCCGAAGAATCAGATGTCAGG
26594612 TA
1 TA
26594614 CTGTAGAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (28 bp):
TATTCAGTCCGAAGAATCAGATGTCAGG
Found at i:26598325 original size:14 final size:14
Alignment explanation
Indices: 26598284--26598334 Score: 57
Period size: 14 Copynumber: 3.4 Consensus size: 14
26598274 TGCCCAGCCC
26598284 AAAAAACAAATAGA
1 AAAAAACAAATAGA
*
26598298 AAATAAATCAAATATA
1 AAA-AAA-CAAATAGA
*
26598314 AAAAACCAAATAGA
1 AAAAAACAAATAGA
26598328 TAAAAAA
1 -AAAAAA
26598335 AAGTTAAAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
14 10 0.33
15 10 0.33
16 10 0.33
ACGTcount: A:0.75, C:0.08, G:0.04, T:0.14
Consensus pattern (14 bp):
AAAAAACAAATAGA
Found at i:26598330 original size:16 final size:15
Alignment explanation
Indices: 26598284--26598334 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 15
26598274 TGCCCAGCCC
26598284 AAAAAACAAATAGA-
1 AAAAAACAAATAGAT
26598298 AAATAAATCAAAT--AT
1 AAA-AAA-CAAATAGAT
26598313 AAAAAACCAAATAGAT
1 AAAAAA-CAAATAGAT
26598329 AAAAAA
1 AAAAAA
26598335 AAGTTAAAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
14 12 0.39
15 6 0.19
16 13 0.42
ACGTcount: A:0.75, C:0.08, G:0.04, T:0.14
Consensus pattern (15 bp):
AAAAAACAAATAGAT
Found at i:26605382 original size:52 final size:51
Alignment explanation
Indices: 26605322--26605427 Score: 153
Period size: 52 Copynumber: 2.1 Consensus size: 51
26605312 CTTTTTACTA
* *
26605322 ATATATAATTTATTAGTGAAAGCGTACATA-AAATCAATGT-GATACAAATTTG
1 ATATATAATTTATTAGTGAAAGAGTACATATAAA--AA-GTACATACAAATTTG
26605374 ATATATAATTTATTAGTGAAAGAGTACATATAAAAAGTACATACAAATTTG
1 ATATATAATTTATTAGTGAAAGAGTACATATAAAAAGTACATACAAATTTG
26605425 ATA
1 ATA
26605428 CTAATATATA
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
50 2 0.04
51 16 0.32
52 29 0.58
53 3 0.06
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.34
Consensus pattern (51 bp):
ATATATAATTTATTAGTGAAAGAGTACATATAAAAAGTACATACAAATTTG
Found at i:26605497 original size:20 final size:20
Alignment explanation
Indices: 26605435--26605497 Score: 51
Period size: 20 Copynumber: 3.1 Consensus size: 20
26605425 ATACTAATAT
26605435 ATAATTATGTTCAACCTTTA
1 ATAATTATGTTCAACCTTTA
* *
26605455 ATTGATATTA--TTCAA-ATAATA
1 A-T-A-ATTATGTTCAACCT-TTA
26605476 ATAATTATGTTCAACCTTTA
1 ATAATTATGTTCAACCTTTA
26605496 AT
1 AT
26605498 TATGTTCAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 14
0.64 0.08 0.28
Matches are distributed among these distances:
18 4 0.12
19 1 0.03
20 12 0.38
21 10 0.31
22 1 0.03
23 4 0.12
ACGTcount: A:0.40, C:0.11, G:0.05, T:0.44
Consensus pattern (20 bp):
ATAATTATGTTCAACCTTTA
Found at i:26605610 original size:41 final size:41
Alignment explanation
Indices: 26605565--26605686 Score: 114
Period size: 41 Copynumber: 3.1 Consensus size: 41
26605555 TTGTACATGT
26605565 AAATACAATACTAGATTTCAATATTTTCCAATCATAATTGC
1 AAATACAATACTAGATTTCAATATTTTCCAATCATAATTGC
* * ** *
26605606 AAATACAATACT--A-TT-AATAATAATT--ATTTGTACA-TGT
1 AAATACAATACTAGATTTCAAT-AT-TTTCCAATCATA-ATTGC
*
26605643 AAATACAATACTAGATTTCAATCTTTTCCAATCATAATTGC
1 AAATACAATACTAGATTTCAATATTTTCCAATCATAATTGC
26605684 AAA
1 AAA
26605687 ATTAATCAAT
Statistics
Matches: 60, Mismatches: 11, Indels: 20
0.66 0.12 0.22
Matches are distributed among these distances:
37 21 0.35
38 5 0.08
39 6 0.10
40 4 0.07
41 24 0.40
ACGTcount: A:0.43, C:0.15, G:0.05, T:0.37
Consensus pattern (41 bp):
AAATACAATACTAGATTTCAATATTTTCCAATCATAATTGC
Found at i:26605949 original size:15 final size:15
Alignment explanation
Indices: 26605929--26605964 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
26605919 CAAATACCAA
26605929 CAATTAATTTTAGGT
1 CAATTAATTTTAGGT
26605944 CAATTAATTTTAGGT
1 CAATTAATTTTAGGT
26605959 CAATTA
1 CAATTA
26605965 TACATATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.36, C:0.08, G:0.11, T:0.44
Consensus pattern (15 bp):
CAATTAATTTTAGGT
Found at i:26606209 original size:11 final size:11
Alignment explanation
Indices: 26606193--26606230 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
26606183 TAGAAATTAG
26606193 TTTGTGAAACT
1 TTTGTGAAACT
*
26606204 TTTGTGAAATT
1 TTTGTGAAACT
*
26606215 TTTGTGAGACT
1 TTTGTGAAACT
26606226 TTTGT
1 TTTGT
26606231 ATTGATTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.21, C:0.05, G:0.21, T:0.53
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:26607789 original size:25 final size:24
Alignment explanation
Indices: 26607761--26607818 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
26607751 TATTATCAAG
* *
26607761 AATTTTATGAAATTATATATTATTA
1 AATTATATGAAATAATA-ATTATTA
*
26607786 AATTATATGTAATAATAATTATTTTA
1 AATTATATGAAATAATAATTA--TTA
26607812 AATTATA
1 AATTATA
26607819 CAAATTCATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 4 0.14
25 14 0.50
26 10 0.36
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (24 bp):
AATTATATGAAATAATAATTATTA
Found at i:26607810 original size:88 final size:91
Alignment explanation
Indices: 26607639--26607843 Score: 299
Period size: 88 Copynumber: 2.3 Consensus size: 91
26607629 TTGATTTTAG
* *
26607639 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
26607704 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
*
26607731 TAAATTCGTATAAGAAAATTTATTATCAAGAATTTTATGAAA-T-TATAT-ATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
26607793 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* * *
26607819 CAAATTCATATAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
26607844 GTTATAATTA
Statistics
Matches: 103, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
88 58 0.56
89 5 0.05
90 1 0.01
91 24 0.23
92 15 0.15
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:26607885 original size:47 final size:49
Alignment explanation
Indices: 26607761--26607886 Score: 123
Period size: 47 Copynumber: 2.6 Consensus size: 49
26607751 TATTATCAAG
* *
26607761 AATTTTATGAAATTATATATTATTAAATTATATGTAATAATAATTATTTTA
1 AATTTTATCAAATCATATATT-TT-AATTATATGTAATAATAATTATTTTA
* * * * *
26607812 AATTATA-CAAATTCATATAATATAATT-TAT-TAGTTATAATTATTTTA
1 AATTTTATCAAA-TCATATATTTTAATTATATGTAATAATAATTATTTTA
* *
26607859 TATTTTATTAAATCATATATTTTAATTA
1 AATTTTATCAAATCATATATTTTAATTA
26607887 AAATATATTT
Statistics
Matches: 60, Mismatches: 12, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
47 33 0.55
48 6 0.10
49 4 0.07
50 4 0.07
51 13 0.22
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (49 bp):
AATTTTATCAAATCATATATTTTAATTATATGTAATAATAATTATTTTA
Found at i:26607894 original size:16 final size:16
Alignment explanation
Indices: 26607857--26607896 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 16
26607847 ATAATTATTT
26607857 TATATTTTATTAAATCA
1 TATATTTTATTAAA-CA
26607874 TATATTTTAATTAAA-A
1 TATATTTT-ATTAAACA
26607890 TATATTT
1 TATATTT
26607897 AATATTAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 8 0.36
17 8 0.36
18 6 0.27
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (16 bp):
TATATTTTATTAAACA
Found at i:26607984 original size:120 final size:120
Alignment explanation
Indices: 26607860--26608872 Score: 1902
Period size: 120 Copynumber: 8.4 Consensus size: 120
26607850 ATTATTTTAT
* * * *
26607860 ATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTTT
1 ATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AATTTATCTTTT
26607924 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
65 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
* *
26607980 ATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATGTGTCTTTTA
1 ATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTTA
26608045 TAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
66 TAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
26608100 ATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTTA
1 ATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTTA
26608165 TAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
66 TAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
*
26608220 ATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTA
1 ATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTTA
26608285 TAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
66 TAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
*
26608340 ATTTTGTTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTTA
1 ATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTTA
26608405 TAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
66 TAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
*
26608460 ATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTA
1 ATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTTA
26608525 TAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
66 TAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
*
26608580 ATTTTGTTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTTA
1 ATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTTA
26608645 TAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
66 TAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
*
26608700 ATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTA
1 ATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTTA
26608765 TAGTATCATATATTATGATTTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
66 TAGTATCATATATTATGA-TTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
26608821 ATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 ATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
26608873 TAAATATGAT
Statistics
Matches: 874, Mismatches: 17, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
120 783 0.90
121 91 0.10
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (120 bp):
ATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTTA
TAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
Found at i:26608019 original size:15 final size:15
Alignment explanation
Indices: 26607984--26608034 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
26607974 TTAAGAATTT
*
26607984 TATTAAATTAT-ATA
1 TATTTAATTATAATA
26607998 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
26608012 TATTTAATAATAAT-
1 TATTTAATTATAATA
26608026 TATGTTAAT
1 TAT-TTAAT
26608035 GTGTCTTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:26608139 original size:15 final size:15
Alignment explanation
Indices: 26608104--26608155 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
26608094 TTAAGAATTT
*
26608104 TATTAAATTAT-ATA
1 TATTTAATTATAATA
26608118 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
26608132 TATTTAATAATAAT-
1 TATTTAATTATAATA
26608146 TATGTTAATT
1 TAT-TTAATT
26608156 TATCTTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:26608259 original size:15 final size:15
Alignment explanation
Indices: 26608224--26608275 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
26608214 TTAAGAATTT
*
26608224 TATTAAATTAT-ATA
1 TATTTAATTATAATA
26608238 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
26608252 TATTTAATAATAAT-
1 TATTTAATTATAATA
26608266 TATGTTAATT
1 TAT-TTAATT
26608276 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:26608379 original size:15 final size:15
Alignment explanation
Indices: 26608349--26608395 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
26608339 AATTTTGTTA
26608349 AATTAT-ATAT-TTT
1 AATTATAATATATTT
26608362 AATTATAATATATTT
1 AATTATAATATATTT
*
26608377 AATAATAAT-TATGTT
1 AATTATAATATAT-TT
26608392 AATT
1 AATT
26608396 TATCTTTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 6 0.21
14 7 0.24
15 16 0.55
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (15 bp):
AATTATAATATATTT
Found at i:26608499 original size:15 final size:15
Alignment explanation
Indices: 26608464--26608515 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
26608454 TTAAGAATTT
*
26608464 TATTAAATTAT-ATA
1 TATTTAATTATAATA
26608478 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
26608492 TATTTAATAATAAT-
1 TATTTAATTATAATA
26608506 TATGTTAATT
1 TAT-TTAATT
26608516 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:26608619 original size:15 final size:15
Alignment explanation
Indices: 26608589--26608635 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
26608579 AATTTTGTTA
26608589 AATTAT-ATAT-TTT
1 AATTATAATATATTT
26608602 AATTATAATATATTT
1 AATTATAATATATTT
*
26608617 AATAATAAT-TATGTT
1 AATTATAATATAT-TT
26608632 AATT
1 AATT
26608636 TATCTTTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 6 0.21
14 7 0.24
15 16 0.55
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (15 bp):
AATTATAATATATTT
Found at i:26608711 original size:38 final size:39
Alignment explanation
Indices: 26607932--26608838 Score: 189
Period size: 38 Copynumber: 22.7 Consensus size: 39
26607922 TTATAGTATC
* * *
26607932 ATATATTATG-ATTTGAGTAAATTCATATAAGAATAT-TA
1 ATATATTAAGAATTTTATTAAATT-ATATAAGAATATATA
**
26607970 AT-TATTAAGAATTTTATTAAATTATATATTTTAAT-TATA
1 ATATATTAAGAATTTTATTAAATTATATA--AGAATATATA
* * * * * *** *
26608009 ATATATTTAATAATAATTATGTTAATGTGTCT-TTTATAGTATC
1 ATATA-TTAAGAAT-TTTAT-TAAAT-TATATAAGAATA-TATA
* * *
26608052 ATATATTATG-ATTTGAGTAAATTCATATAAGAATAT-TA
1 ATATATTAAGAATTTTATTAAATT-ATATAAGAATATATA
**
26608090 AT-TATTAAGAATTTTATTAAATTATATATTTTAAT-TATA
1 ATATATTAAGAATTTTATTAAATTATATA--AGAATATATA
* * * **** *
26608129 ATATATTTAATAATAATTATGTTAATT-TATCTTTTATAGTATC
1 ATATA-TTAAGAAT-TTTAT-TAAATTATAT-AAGAATA-TATA
* * *
26608172 ATATATTATG-ATTTGAGTAAATTCATATAAGAATAT-TA
1 ATATATTAAGAATTTTATTAAATT-ATATAAGAATATATA
**
26608210 AT-TATTAAGAATTTTATTAAATTATATATTTTAAT-TATA
1 ATATATTAAGAATTTTATTAAATTATATA--AGAATATATA
* * * *** *
26608249 ATATATTTAATAATAATTATGTTAATT-TATATTTTATAGTATC
1 ATATA-TTAAGAAT-TTTAT-TAAATTATATA-AGAATA-TATA
* * *
26608292 ATATATTATG-ATTTGAGTAAATTCATATAAGAATAT-TA
1 ATATATTAAGAATTTTATTAAATT-ATATAAGAATATATA
* **
26608330 AT-TATTAAGAATTTTGTTAAATTATATATTTTAAT-TATA
1 ATATATTAAGAATTTTATTAAATTATATA--AGAATATATA
* * * **** *
26608369 ATATATTTAATAATAATTATGTTAATT-TATCTTTTATAGTATC
1 ATATA-TTAAGAAT-TTTAT-TAAATTATAT-AAGAATA-TATA
* * *
26608412 ATATATTATG-ATTTGAGTAAATTCATATAAGAATAT-TA
1 ATATATTAAGAATTTTATTAAATT-ATATAAGAATATATA
**
26608450 AT-TATTAAGAATTTTATTAAATTATATATTTTAAT-TATA
1 ATATATTAAGAATTTTATTAAATTATATA--AGAATATATA
* * * *** *
26608489 ATATATTTAATAATAATTATGTTAATT-TATATTTTATAGTATC
1 ATATA-TTAAGAAT-TTTAT-TAAATTATATA-AGAATA-TATA
* * *
26608532 ATATATTATG-ATTTGAGTAAATTCATATAAGAATAT-TA
1 ATATATTAAGAATTTTATTAAATT-ATATAAGAATATATA
* **
26608570 AT-TATTAAGAATTTTGTTAAATTATATATTTTAAT-TATA
1 ATATATTAAGAATTTTATTAAATTATATA--AGAATATATA
* * * **** *
26608609 ATATATTTAATAATAATTATGTTAATT-TATCTTTTATAGTATC
1 ATATA-TTAAGAAT-TTTAT-TAAATTATAT-AAGAATA-TATA
* * *
26608652 ATATATTATG-ATTTGAGTAAATTCATATAAGAATAT-TA
1 ATATATTAAGAATTTTATTAAATT-ATATAAGAATATATA
**
26608690 AT-TATTAAGAATTTTATTAAATTATATATTTTAAT-TATA
1 ATATATTAAGAATTTTATTAAATTATATA--AGAATATATA
* * * *** *
26608729 ATATATTTAATAATAATTATGTTAATT-TATATTTTATAGTATC
1 ATATA-TTAAGAAT-TTTAT-TAAATTATATA-AGAATA-TATA
* *
26608772 ATATATTATG-ATTTTGAGTAAATTCATATAAGAATAT-TA
1 ATATATTAAGAATTTT-ATTAAATT-ATATAAGAATATATA
26608811 AT-TATTAAGAATTTTATTAAATTATATA
1 ATATATTAAGAATTTTATTAAATTATATA
26608839 TTTTAATTAT
Statistics
Matches: 624, Mismatches: 155, Indels: 181
0.65 0.16 0.19
Matches are distributed among these distances:
37 82 0.13
38 116 0.19
39 94 0.15
40 52 0.08
41 115 0.18
42 72 0.12
43 90 0.14
44 3 0.00
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (39 bp):
ATATATTAAGAATTTTATTAAATTATATAAGAATATATA
Found at i:26608739 original size:15 final size:15
Alignment explanation
Indices: 26608704--26608755 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
26608694 TTAAGAATTT
*
26608704 TATTAAATTAT-ATA
1 TATTTAATTATAATA
26608718 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
26608732 TATTTAATAATAAT-
1 TATTTAATTATAATA
26608746 TATGTTAATT
1 TAT-TTAATT
26608756 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:26608855 original size:16 final size:16
Alignment explanation
Indices: 26608834--26608875 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
26608824 TTATTAAATT
*
26608834 ATATATTTTAATTATA
1 ATATATTTTAATAATA
26608850 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
26608865 AT-TATGTTTAA
1 ATATAT-TTTAA
26608876 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:26608860 original size:15 final size:15
Alignment explanation
Indices: 26608825--26608866 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
26608815 TTAAGAATTT
*
26608825 TATTAAATTAT-ATA
1 TATTTAATTATAATA
26608839 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
26608853 TATTTAATAATAAT
1 TATTTAATTATAAT
26608867 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:26609106 original size:45 final size:44
Alignment explanation
Indices: 26609016--26609110 Score: 120
Period size: 45 Copynumber: 2.1 Consensus size: 44
26609006 TTACACCTCT
* *
26609016 ATTACATTCAACCAAACACAAGAATACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACACAAGAATACTATTACACCTCTAATCC
* * *
26609060 ATTACATTCAACCAAACA-ATTGATTTGCTATTACACCTCTAATCC
1 ATTACATTCAACCAAACACA-AGA-ATACTATTACACCTCTAATCC
26609105 ATTACA
1 ATTACA
26609111 CCTCTATTCC
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
43 1 0.02
44 20 0.45
45 23 0.52
ACGTcount: A:0.38, C:0.27, G:0.04, T:0.31
Consensus pattern (44 bp):
ATTACATTCAACCAAACACAAGAATACTATTACACCTCTAATCC
Found at i:26609110 original size:16 final size:16
Alignment explanation
Indices: 26609089--26609137 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
26609079 TTGATTTGCT
*
26609089 ATTACACCTCTAATCC
1 ATTACACCTCTATTCC
26609105 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
26609121 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
26609137 A
1 A
26609138 ATAGAGCGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.27, C:0.37, G:0.02, T:0.35
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:26617291 original size:12 final size:12
Alignment explanation
Indices: 26617274--26617298 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26617264 AATTATTGAA
26617274 TGCATTGTTGTG
1 TGCATTGTTGTG
26617286 TGCATTGTTGTG
1 TGCATTGTTGTG
26617298 T
1 T
26617299 TGAACTTCCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.32, T:0.52
Consensus pattern (12 bp):
TGCATTGTTGTG
Found at i:26631030 original size:16 final size:16
Alignment explanation
Indices: 26630994--26631024 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26630984 GTTACATCTA
26630994 TATTACAGCTCTATTC
1 TATTACAGCTCTATTC
*
26631010 TATTATAGCTCTATT
1 TATTACAGCTCTATT
26631025 ACATTACAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.19, G:0.06, T:0.48
Consensus pattern (16 bp):
TATTACAGCTCTATTC
Found at i:26631758 original size:25 final size:25
Alignment explanation
Indices: 26631730--26631789 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
26631720 TTTCCTAAGT
26631730 TCTAAGAGTA-AGTTTTCTTACTTGA
1 TCTAAGA-TACAGTTTTCTTACTTGA
*
26631755 TCTATGATACAGTTTTCTTACTTGA
1 TCTAAGATACAGTTTTCTTACTTGA
*
26631780 TCTATGATAC
1 TCTAAGATAC
26631790 TTTGCAAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
24 2 0.06
25 31 0.94
ACGTcount: A:0.27, C:0.15, G:0.13, T:0.45
Consensus pattern (25 bp):
TCTAAGATACAGTTTTCTTACTTGA
Found at i:26632217 original size:17 final size:17
Alignment explanation
Indices: 26632195--26632244 Score: 82
Period size: 17 Copynumber: 2.9 Consensus size: 17
26632185 ATAGAAAGTC
26632195 AAAGATATGGGTATCAG
1 AAAGATATGGGTATCAG
* *
26632212 AAAGATATAGGTATAAG
1 AAAGATATGGGTATCAG
26632229 AAAGATATGGGTATCA
1 AAAGATATGGGTATCA
26632245 AAATCTGAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.46, C:0.04, G:0.26, T:0.24
Consensus pattern (17 bp):
AAAGATATGGGTATCAG
Found at i:26635802 original size:17 final size:17
Alignment explanation
Indices: 26635780--26635821 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
26635770 ATAGAAAGTC
26635780 AAAGATATAAGTATCAG
1 AAAGATATAAGTATCAG
*
26635797 AAAGATATAGGTATCAG
1 AAAGATATAAGTATCAG
26635814 AAAGATAT
1 AAAGATAT
26635822 GGGTTTCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.52, C:0.05, G:0.19, T:0.24
Consensus pattern (17 bp):
AAAGATATAAGTATCAG
Found at i:26650848 original size:41 final size:41
Alignment explanation
Indices: 26650773--26651006 Score: 239
Period size: 40 Copynumber: 5.8 Consensus size: 41
26650763 TGAGTTTTCG
* * ***
26650773 AGGGCTTTAGTGGCTTTTTTG-AAAAGCGTTGCTAATG-T-
1 AGGGCTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTC
*
26650811 ATGGGCCTTTAGTGGCGTTTTTGAAAAAGCACCGCTAATGCTC
1 A-GGG-CTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTC
* *
26650854 AGGGCTTTAGCGGCGTTTTTGAAAAATCACCACTAATGCTC
1 AGGGCTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTC
* * *
26650895 AAGGC-TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATACTC
1 AGGGCTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTC
* *
26650935 AGGGTTTTAGCGGCGTTTCT-AAAAAGCACCGCTAATGCTC
1 AGGGCTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTC
** * *
26650975 TA--TTTTTAGCGGCATTTTTGAAAAAGCGCCGC
1 -AGGGCTTTAGCGGCGTTTTTGAAAAAGCACCGC
26651007 AAAAAATATT
Statistics
Matches: 167, Mismatches: 21, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.01
39 17 0.10
40 79 0.47
41 65 0.39
42 4 0.02
43 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (41 bp):
AGGGCTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTC
Found at i:26650909 original size:81 final size:80
Alignment explanation
Indices: 26650819--26651006 Score: 259
Period size: 81 Copynumber: 2.3 Consensus size: 80
26650809 GTATGGGCCT
* * * * *
26650819 TTAGTGGCGTTTTTGAAAAAGCACCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGAAAAATCAC
1 TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATACTCAGGGCTTTAGCGGCGTTTCT-AAAAAGCAC
26650884 CACTAATGCTCAAGGC
65 CACTAATGCTCAAGGC
*
26650900 TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATACTCAGGGTTTTAGCGGCGTTTCTAAAAAGCACC
1 TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATACTCAGGGCTTTAGCGGCGTTTCTAAAAAGCACC
* * ***
26650965 GCTAATGCTCTATTT
66 ACTAATGCTCAAGGC
*
26650980 TTAGCGGCATTTTTGAAAAAGCGCCGC
1 TTAGCGGCGTTTTTGAAAAAGCGCCGC
26651007 AAAAAATATT
Statistics
Matches: 95, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
80 45 0.47
81 50 0.53
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (80 bp):
TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATACTCAGGGCTTTAGCGGCGTTTCTAAAAAGCACC
ACTAATGCTCAAGGC
Found at i:26651346 original size:28 final size:30
Alignment explanation
Indices: 26651308--26651384 Score: 74
Period size: 28 Copynumber: 2.6 Consensus size: 30
26651298 ATTAATTATC
26651308 ACTATAGTTTAAGGTTTTTGGTTTAGG-G-T
1 ACTAT-GTTTAAGGTTTTTGGTTTAGGAGTT
**
26651337 A-TATGGTTT-AGAGTTTAAGGTTTAGGAGTT
1 ACTAT-GTTTAAG-GTTTTTGGTTTAGGAGTT
26651367 ACTAT-TTTAAGGTTTTTG
1 ACTATGTTTAAGGTTTTTG
26651385 TAGATTTTTG
Statistics
Matches: 38, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
27 2 0.05
28 19 0.50
29 10 0.26
30 4 0.11
31 3 0.08
ACGTcount: A:0.23, C:0.03, G:0.26, T:0.48
Consensus pattern (30 bp):
ACTATGTTTAAGGTTTTTGGTTTAGGAGTT
Found at i:26652050 original size:21 final size:21
Alignment explanation
Indices: 26652022--26652071 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
26652012 AGGACAGTTA
26652022 TAAGGGTT-GGGGTTTAAGGGT
1 TAAGGGTTAGGGG-TTAAGGGT
*
26652043 TATGGGTTAGGGGTTAAGGGT
1 TAAGGGTTAGGGGTTAAGGGT
26652064 TAAGGGTT
1 TAAGGGTT
26652072 TACGATTTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.20, C:0.00, G:0.46, T:0.34
Consensus pattern (21 bp):
TAAGGGTTAGGGGTTAAGGGT
Found at i:26652051 original size:7 final size:7
Alignment explanation
Indices: 26652022--26652071 Score: 57
Period size: 7 Copynumber: 7.1 Consensus size: 7
26652012 AGGACAGTTA
26652022 TAAGGGT
1 TAAGGGT
*
26652029 T-GGGGTT
1 TAAGGG-T
26652036 TAAGGGT
1 TAAGGGT
*
26652043 TATGGGT
1 TAAGGGT
*
26652050 TAGGGGT
1 TAAGGGT
26652057 TAAGGGT
1 TAAGGGT
26652064 TAAGGGT
1 TAAGGGT
26652071 T
1 T
26652072 TACGATTTAG
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
6 3 0.08
7 30 0.83
8 3 0.08
ACGTcount: A:0.20, C:0.00, G:0.46, T:0.34
Consensus pattern (7 bp):
TAAGGGT
Found at i:26652106 original size:7 final size:7
Alignment explanation
Indices: 26652025--26652107 Score: 51
Period size: 7 Copynumber: 11.7 Consensus size: 7
26652015 ACAGTTATAA
26652025 GGGTT-G
1 GGGTTAG
*
26652031 GGGTTTAA
1 GGG-TTAG
*
26652039 GGGTTAT
1 GGGTTAG
26652046 GGGTTAG
1 GGGTTAG
*
26652053 GGGTTAA
1 GGGTTAG
26652060 GGGTTAAG
1 GGGTT-AG
* *
26652068 GGTTTAC
1 GGGTTAG
**
26652075 GATTTAG
1 GGGTTAG
**
26652082 GATTTAG
1 GGGTTAG
*
26652089 GGGATAG
1 GGGTTAG
26652096 GGGTTAG
1 GGGTTAG
26652103 GGGTT
1 GGGTT
26652108 TAAGGTTTAA
Statistics
Matches: 61, Mismatches: 13, Indels: 5
0.77 0.16 0.06
Matches are distributed among these distances:
6 3 0.05
7 50 0.82
8 8 0.13
ACGTcount: A:0.19, C:0.01, G:0.46, T:0.34
Consensus pattern (7 bp):
GGGTTAG
Found at i:26652114 original size:7 final size:7
Alignment explanation
Indices: 26652104--26652130 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
26652094 AGGGGTTAGG
26652104 GGTTTAA
1 GGTTTAA
26652111 GGTTTAA
1 GGTTTAA
26652118 GGTTTAA
1 GGTTTAA
26652125 GGTTTA
1 GGTTTA
26652131 CATTAATTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.30, T:0.44
Consensus pattern (7 bp):
GGTTTAA
Found at i:26652838 original size:23 final size:24
Alignment explanation
Indices: 26652810--26652854 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
26652800 TCACTTAACT
26652810 AAAAATTGTTAGCAGA-CAAAATA
1 AAAAATTGTTAGCAGAGCAAAATA
*
26652833 AAAAATTTTTAGCAGAGCAAAA
1 AAAAATTGTTAGCAGAGCAAAA
26652855 CGGCGTCATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.56, C:0.09, G:0.13, T:0.22
Consensus pattern (24 bp):
AAAAATTGTTAGCAGAGCAAAATA
Found at i:26655023 original size:11 final size:11
Alignment explanation
Indices: 26655007--26655031 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26654997 ATTTAGTAGG
26655007 CCCCACTTAAT
1 CCCCACTTAAT
26655018 CCCCACTTAAT
1 CCCCACTTAAT
26655029 CCC
1 CCC
26655032 GTGTTTAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.52, G:0.00, T:0.24
Consensus pattern (11 bp):
CCCCACTTAAT
Found at i:26661645 original size:26 final size:28
Alignment explanation
Indices: 26661591--26661651 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
26661581 TATTATCAAG
* *
26661591 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
26661619 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
26661645 AATTATA
1 AATTATA
26661652 CAAATTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:26661651 original size:44 final size:43
Alignment explanation
Indices: 26661509--26661651 Score: 121
Period size: 44 Copynumber: 3.2 Consensus size: 43
26661499 GAATTTTATG
* *
26661509 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTT
1 AAATTATATATTATTATTAAATTATA-TTAATAATAATTATTTT
* ** * *
26661553 AAATTGTATAAATTCATATAAGAAAATT-TATT-ATCAAGAATT-TTATG
1 AAA-T-TATATATT-AT-T-ATTAAATTATATTAAT-AATAATTATT-TT
26661600 AAATTATATATTATTATTAAATTATATGTAATAATAATTATTTT
1 AAATTATATATTATTATTAAATTATAT-TAATAATAATTATTTT
26661644 AAATTATA
1 AAATTATA
26661652 CAAATTCATA
Statistics
Matches: 76, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
42 6 0.08
43 4 0.05
44 21 0.28
45 12 0.16
46 11 0.14
47 13 0.17
48 3 0.04
49 6 0.08
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.48
Consensus pattern (43 bp):
AAATTATATATTATTATTAAATTATATTAATAATAATTATTTT
Found at i:26661695 original size:91 final size:91
Alignment explanation
Indices: 26661488--26661676 Score: 315
Period size: 91 Copynumber: 2.1 Consensus size: 91
26661478 CATATAACAT
* * *
26661488 TTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATATTTAATATTAATTATTTT
1 TTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATATGTAATAATAATTATTTT
* *
26661553 AAATTGTATAAATTCATATAAGAAAA
66 AAATTATACAAATTCATATAAGAAAA
*
26661579 TTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATATGTAATAATAATTATTTT
1 TTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATATGTAATAATAATTATTTT
*
26661644 AAATTATACAAATTCATATAAGATAA
66 AAATTATACAAATTCATATAAGAAAA
26661670 TTTATTA
1 TTTATTA
26661677 GTTATAATTA
Statistics
Matches: 91, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
91 91 1.00
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.48
Consensus pattern (91 bp):
TTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATATGTAATAATAATTATTTT
AAATTATACAAATTCATATAAGAAAA
Found at i:26661893 original size:59 final size:57
Alignment explanation
Indices: 26661826--26662133 Score: 159
Period size: 59 Copynumber: 5.2 Consensus size: 57
26661816 TTTTATTAAG
26661826 TCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTTATAGTA
1 TCATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTAT-TTTTATAGTA
* * **
26661885 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTA-TTAAGATT-TTTATTA-A--
1 TCATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTAA-ATTATTT-TTATAGT
26661945 A
57 A
* * *
26661946 TTATATATTTTAATTATAATATATTTAATAATT-ATTATGTTAATTTATATTTTATAGTA
1 TCATATATTTTAATTAAAATATATTTAAT-ATTAATTAT-TTAAATTAT-TTTTATAGTA
* * ** * * *
26662005 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATT-TTATTA-A--A
1 TCATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTA-AATTATTTTTATAGTA
* * * *
26662066 TTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTA
1 TCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTAT-TTTTATAGTA
*
26662125 TTATATATT
1 TCATATATT
26662134 ATGATTTGAG
Statistics
Matches: 186, Mismatches: 31, Indels: 64
0.66 0.11 0.23
Matches are distributed among these distances:
54 20 0.11
55 16 0.09
56 14 0.08
57 8 0.04
59 30 0.16
60 16 0.09
61 20 0.11
63 9 0.05
64 12 0.06
65 19 0.10
66 22 0.12
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (57 bp):
TCATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATTTTTATAGTA
Found at i:26662011 original size:120 final size:121
Alignment explanation
Indices: 26661692--26662231 Score: 865
Period size: 120 Copynumber: 4.5 Consensus size: 121
26661682 AATTATTTTA
* * * *
26661692 AATTTTATTAAGTCATATATTTTAATTAAAATATATTTAAT-ATAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTCAAATTATATTT
26661755 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATAATTATTAAG
66 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATA-T--TAATTATTAAG
* * * * *
26661814 AATTTTATTAAGTCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTCAAATTATATTT
26661878 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* * *
26661934 ATTTTTATTAAATTATATATTTTAATTATAATATATTTAATAATTATTATGTT-AATTTATATTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTCAAATTATATTT
*
26661998 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
26662054 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AATTTATATTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTCAAATTATATTT
* *
26662118 TATAGTATTATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
26662174 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTCAAAT
26662232 ATGATTAAAT
Statistics
Matches: 401, Mismatches: 14, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
120 289 0.72
121 5 0.01
122 42 0.10
123 65 0.16
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (121 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTCAAATTATATTT
TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:26662094 original size:15 final size:15
Alignment explanation
Indices: 26662059--26662110 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
26662049 TTAAGAATTT
*
26662059 TATTAAATTAT-ATA
1 TATTTAATTATAATA
26662073 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
26662087 TATTTAATAATAAT-
1 TATTTAATTATAATA
26662101 TATGTTAATT
1 TAT-TTAATT
26662111 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:26662209 original size:16 final size:16
Alignment explanation
Indices: 26662188--26662229 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
26662178 TTATTAAATT
*
26662188 ATATATTTTAATTATA
1 ATATATTTTAATAATA
26662204 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
26662219 AT-TATGTTTAA
1 ATATAT-TTTAA
26662230 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:26662214 original size:15 final size:15
Alignment explanation
Indices: 26662179--26662220 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
26662169 TTAAGAATTT
*
26662179 TATTAAATTAT-ATA
1 TATTTAATTATAATA
26662193 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
26662207 TATTTAATAATAAT
1 TATTTAATTATAAT
26662221 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:26662464 original size:16 final size:16
Alignment explanation
Indices: 26662443--26662496 Score: 90
Period size: 16 Copynumber: 3.4 Consensus size: 16
26662433 TTGATTTGCT
26662443 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
26662459 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
26662475 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
*
26662491 AATACA
1 ATTACA
26662497 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.28, C:0.35, G:0.02, T:0.35
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:26663923 original size:42 final size:43
Alignment explanation
Indices: 26663867--26663959 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 43
26663857 TTCTTTATAA
* * **
26663867 TGGTAAAAGTGTCGCTAAAAGTCATGAT-TTTAGCGGCGTTTG
1 TGGTAGAAGCGTCGCTAAAAGTCATGATCTTTAGCAACGTTTG
* * *
26663909 TGGTAGAAGCGTCGCTAAAGGTTATGGTCTTTAGCAACGTTTG
1 TGGTAGAAGCGTCGCTAAAAGTCATGATCTTTAGCAACGTTTG
*
26663952 TGATAGAA
1 TGGTAGAA
26663960 TATTAATTTT
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 23 0.55
43 19 0.45
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.32
Consensus pattern (43 bp):
TGGTAGAAGCGTCGCTAAAAGTCATGATCTTTAGCAACGTTTG
Found at i:26664002 original size:19 final size:20
Alignment explanation
Indices: 26663954--26664002 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
26663944 AACGTTTGTG
26663954 ATAGAA-TATTAATTTTAAAT
1 ATAGAATTA-TAATTTTAAAT
26663974 ATAGAATTATAATTTTAAAT
1 ATAGAATTATAATTTTAAAT
26663994 ATA-AATTAT
1 ATAGAATTAT
26664003 TTGTAAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.21
20 20 0.71
21 2 0.07
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (20 bp):
ATAGAATTATAATTTTAAAT
Found at i:26676800 original size:3 final size:3
Alignment explanation
Indices: 26676786--26676817 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
26676776 ATGAATTAAA
*
26676786 AAT AAA AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
26676818 GCTTGAAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:26678163 original size:23 final size:23
Alignment explanation
Indices: 26678118--26678170 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
26678108 ATGTTCAATC
* *
26678118 ATGTTCGCAAACAAGTATGCTTA
1 ATGTTTGCAAACAAGTATACTTA
26678141 ATGTTTGCAAACAAGT-TCACTTA
1 ATGTTTGCAAACAAGTAT-ACTTA
*
26678164 CTGTTTG
1 ATGTTTG
26678171 AATATAGCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 1 0.04
23 25 0.96
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (23 bp):
ATGTTTGCAAACAAGTATACTTA
Found at i:26678562 original size:49 final size:48
Alignment explanation
Indices: 26678478--26678577 Score: 121
Period size: 49 Copynumber: 2.1 Consensus size: 48
26678468 GGGAAAAGGT
* * **
26678478 TTACGGAAGGTGGTAAAGTGGCATTGCTCTCAGACACCTGAGGAGAGGC
1 TTACGGAAGGTGATAAAGTGGCACTGCTCTCAGACA-CAAAGGAGAGGC
* *
26678527 TTACGGAAGGTGATAAAGTGGCCCTGTTC-CTAGACACAAAGGAGAGGC
1 TTACGGAAGGTGATAAAGTGGCACTGCTCTC-AGACACAAAGGAGAGGC
26678575 TTA
1 TTA
26678578 AAGAAGGTAG
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
48 14 0.32
49 30 0.68
ACGTcount: A:0.29, C:0.18, G:0.32, T:0.21
Consensus pattern (48 bp):
TTACGGAAGGTGATAAAGTGGCACTGCTCTCAGACACAAAGGAGAGGC
Found at i:26678704 original size:96 final size:96
Alignment explanation
Indices: 26678523--26678744 Score: 318
Period size: 96 Copynumber: 2.3 Consensus size: 96
26678513 ACCTGAGGAG
* * *
26678523 AGGCTTACGGAAGGTGATAAAGTGGCCCTGTTCCTAGACACAAAGGAGAGGCTTAAAGAAGGTAG
1 AGGCTTACAGAAGGTGGTAAAGTGGCCCTGTTCCAAGACACAAAGGAGAGGCTTAAAGAAGGTAG
26678588 TAGAGTGACCTACTCCCACACGCATGGGAAA
66 TAGAGTGACCTACTCCCACACGCATGGGAAA
* * * * * * * *
26678619 AGGTTTACAGAATGTGGTAAAGTGGTCTTGTTCCAAGACGCATAGGAGAGGCTTATAGAAGGTGG
1 AGGCTTACAGAAGGTGGTAAAGTGGCCCTGTTCCAAGACACAAAGGAGAGGCTTAAAGAAGGTAG
*
26678684 TAGAGTGACCTACTCCCACACGCATGGGGAA
66 TAGAGTGACCTACTCCCACACGCATGGGAAA
* *
26678715 AGGCTTACGGAAGGTGGTAAAGTGACCCTG
1 AGGCTTACAGAAGGTGGTAAAGTGGCCCTG
26678745 CTCCTAGATG
Statistics
Matches: 108, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
96 108 1.00
ACGTcount: A:0.31, C:0.18, G:0.31, T:0.20
Consensus pattern (96 bp):
AGGCTTACAGAAGGTGGTAAAGTGGCCCTGTTCCAAGACACAAAGGAGAGGCTTAAAGAAGGTAG
TAGAGTGACCTACTCCCACACGCATGGGAAA
Found at i:26678719 original size:48 final size:48
Alignment explanation
Indices: 26678453--26678741 Score: 177
Period size: 48 Copynumber: 6.0 Consensus size: 48
26678443 CCAAATGTCT
* * * * *
26678453 TACTCCCACACGCATGGGAAAAGGTTTACGGAAGGTGGTAAAGTGGCAT
1 TACTCCCACACGCATGGGGAAAGGCTTACAGAAGGTGGTAAAGTGAC-C
* * * * * * * * * *
26678502 TGCTCTCAGACACCTGAGGAGAGGCTTACGGAAGGTGATAAAGTGGCCC
1 TACTCCCACACGCATGGGGAAAGGCTTACAGAAGGTGGTAAAGT-GACC
** * * * ** * * * *
26678551 TGTTCCTAGACACA-AAGGAGAGGCTTAAAGAAGGTAGTAGAGTGACC
1 TACTCCCACACGCATGGGGAAAGGCTTACAGAAGGTGGTAAAGTGACC
* * * * *
26678598 TACTCCCACACGCATGGGAAAAGGTTTACAGAATGTGGTAAAGTGGTCT
1 TACTCCCACACGCATGGGGAAAGGCTTACAGAAGGTGGTAAAGT-GACC
** * * * * * *
26678647 TGTTCCAAGACGCAT-AGGAGAGGCTTATAGAAGGTGGTAGAGTGACC
1 TACTCCCACACGCATGGGGAAAGGCTTACAGAAGGTGGTAAAGTGACC
*
26678694 TACTCCCACACGCATGGGGAAAGGCTTACGGAAGGTGGTAAAGTGACC
1 TACTCCCACACGCATGGGGAAAGGCTTACAGAAGGTGGTAAAGTGACC
26678742 CTGCTCCTAG
Statistics
Matches: 175, Mismatches: 61, Indels: 9
0.71 0.25 0.04
Matches are distributed among these distances:
47 25 0.14
48 91 0.52
49 57 0.33
50 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.31, T:0.20
Consensus pattern (48 bp):
TACTCCCACACGCATGGGGAAAGGCTTACAGAAGGTGGTAAAGTGACC
Found at i:26695972 original size:14 final size:14
Alignment explanation
Indices: 26695955--26696000 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
26695945 AATATATATG
*
26695955 ATTTAAGGTTTAGT
1 ATTTAAAGTTTAGT
26695969 ATTTAATA-TTTAG-
1 ATTTAA-AGTTTAGT
*
26695982 ATTTAAAGTTTATT
1 ATTTAAAGTTTAGT
26695996 ATTTA
1 ATTTA
26696001 TTTATAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
12 1 0.04
13 10 0.37
14 16 0.59
ACGTcount: A:0.35, C:0.00, G:0.11, T:0.54
Consensus pattern (14 bp):
ATTTAAAGTTTAGT
Found at i:26695992 original size:27 final size:28
Alignment explanation
Indices: 26695943--26696000 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 28
26695933 TATCTTTAAA
*
26695943 TTAATATATATGATTTAAGGTTTAGTAT
1 TTAATATATATGATTTAAAGTTTAGTAT
* *
26695971 TTAATATTTA-GATTTAAAGTTTATTAT
1 TTAATATATATGATTTAAAGTTTAGTAT
26695998 TTA
1 TTA
26696001 TTTATAATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 18 0.67
28 9 0.33
ACGTcount: A:0.36, C:0.00, G:0.10, T:0.53
Consensus pattern (28 bp):
TTAATATATATGATTTAAAGTTTAGTAT
Found at i:26696743 original size:16 final size:17
Alignment explanation
Indices: 26696708--26696745 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
26696698 TTATCTCTAT
*
26696708 ATTTAATTTTTGACATA
1 ATTTAATATTTGACATA
*
26696725 ATTTAATATTT-ATATA
1 ATTTAATATTTGACATA
26696741 ATTTA
1 ATTTA
26696746 CATAATAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (17 bp):
ATTTAATATTTGACATA
Found at i:26698726 original size:24 final size:25
Alignment explanation
Indices: 26698686--26698752 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 25
26698676 TTTTAATATA
*
26698686 TAAAATATAAATTTTAAATATTTTT
1 TAAAATATAAATATTAAATATTTTT
* *
26698711 TAAAA-ATAAATATTAATTA-TTTA
1 TAAAATATAAATATTAAATATTTTT
*
26698734 TAAAAT-TTAAT-TTAAATAT
1 TAAAATATAAATATTAAATAT
26698753 ATAAACTAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
22 6 0.17
23 12 0.34
24 12 0.34
25 5 0.14
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (25 bp):
TAAAATATAAATATTAAATATTTTT
Found at i:26698757 original size:20 final size:21
Alignment explanation
Indices: 26698669--26698778 Score: 75
Period size: 20 Copynumber: 5.1 Consensus size: 21
26698659 ATAATTTATT
26698669 ATTAATATTTT-AATATATAAA
1 ATTAA-ATTTTAAATATATAAA
*
26698690 ATATAAATTTTAAATATTTTTTAAA
1 AT-TAAATTTTAAATA---TATAAA
* * *
26698715 AATAAATATTAATTATTTATAAA
1 ATTAAATTTTAA--ATATATAAA
*
26698738 ATTTAA-TTTAAATATAT-AA
1 ATTAAATTTTAAATATATAAA
*
26698757 ACTAAATTTTAAATATA-AAA
1 ATTAAATTTTAAATATATAAA
26698777 AT
1 AT
26698779 ATAACCAATA
Statistics
Matches: 68, Mismatches: 12, Indels: 19
0.69 0.12 0.19
Matches are distributed among these distances:
19 6 0.09
20 18 0.26
21 7 0.10
22 11 0.16
23 9 0.13
24 9 0.13
25 6 0.09
26 2 0.03
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (21 bp):
ATTAAATTTTAAATATATAAA
Found at i:26700924 original size:14 final size:15
Alignment explanation
Indices: 26700905--26700936 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
26700895 ATTAAATACC
26700905 TTTTTTCATATA-TA
1 TTTTTTCATATATTA
26700919 TTTTTTCATATATTA
1 TTTTTTCATATATTA
26700934 TTT
1 TTT
26700937 AGTTAAGCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTTTTCATATATTA
Found at i:26701046 original size:20 final size:21
Alignment explanation
Indices: 26701021--26701061 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
26701011 TGTATATATA
26701021 TGTATA-TATAATGTTAAATT
1 TGTATATTATAATGTTAAATT
* *
26701041 TGTATATTATTATTTTAAATT
1 TGTATATTATAATGTTAAATT
26701062 GCTTCATAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (21 bp):
TGTATATTATAATGTTAAATT
Found at i:26701081 original size:25 final size:25
Alignment explanation
Indices: 26701046--26701110 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 25
26701036 AAATTTGTAT
*
26701046 ATTATTATTTTAAATTGCTTCATAG
1 ATTATTATTTTAAATTACTTCATAG
* * * *
26701071 ATTATTGTTTTAAGTTACTTTATAT
1 ATTATTATTTTAAATTACTTCATAG
26701096 ATTATTTTATTTTAA
1 ATTA--TTATTTTAA
26701111 GTTATTTTAC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
25 24 0.75
27 8 0.25
ACGTcount: A:0.31, C:0.05, G:0.06, T:0.58
Consensus pattern (25 bp):
ATTATTATTTTAAATTACTTCATAG
Found at i:26701134 original size:27 final size:27
Alignment explanation
Indices: 26701078--26701134 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
26701068 TAGATTATTG
* * *
26701078 TTTTAAGTTACTTTATATATTATTTTA
1 TTTTAAGTTACTTTACATATTACTTAA
*
26701105 TTTTAAGTTATTTTACATATTACTTAA
1 TTTTAAGTTACTTTACATATTACTTAA
26701132 TTT
1 TTT
26701135 AAAATTAACC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.30, C:0.05, G:0.04, T:0.61
Consensus pattern (27 bp):
TTTTAAGTTACTTTACATATTACTTAA
Found at i:26706832 original size:29 final size:29
Alignment explanation
Indices: 26706789--26706861 Score: 137
Period size: 29 Copynumber: 2.5 Consensus size: 29
26706779 AAAAAATAAA
26706789 ATTAATAACTGAAATGGCATGCCCACAAG
1 ATTAATAACTGAAATGGCATGCCCACAAG
*
26706818 ATTAATAACTAAAATGGCATGCCCACAAG
1 ATTAATAACTGAAATGGCATGCCCACAAG
26706847 ATTAATAACTGAAAT
1 ATTAATAACTGAAAT
26706862 TTTCCATTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.45, C:0.18, G:0.14, T:0.23
Consensus pattern (29 bp):
ATTAATAACTGAAATGGCATGCCCACAAG
Found at i:26706934 original size:32 final size:32
Alignment explanation
Indices: 26706887--26706949 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
26706877 TAAACAAACC
* *
26706887 TTAAATGTGGCTAATTGCTTTATAAGCCCTCT
1 TTAAATGTGACTAATTGCCTTATAAGCCCTCT
* *
26706919 TTAAATGTGATTAATTGCCTTGTAAGCCCTC
1 TTAAATGTGACTAATTGCCTTATAAGCCCTC
26706950 CTTATTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (32 bp):
TTAAATGTGACTAATTGCCTTATAAGCCCTCT
Found at i:26707017 original size:27 final size:27
Alignment explanation
Indices: 26706987--26707040 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
26706977 CTTCAACTCA
26706987 CTATATTGTGT-TTAAACAAGCCCTTAC
1 CTAT-TTGTGTATTAAACAAGCCCTTAC
* *
26707014 CTATTTTTGTAGTTAAATAAGCCCTTA
1 CTATTTGTGTA-TTAAACAAGCCCTTA
26707041 ACTTATGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 5 0.22
27 4 0.17
28 14 0.61
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.41
Consensus pattern (27 bp):
CTATTTGTGTATTAAACAAGCCCTTAC
Found at i:26709089 original size:11 final size:12
Alignment explanation
Indices: 26709062--26709091 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26709052 CGCGAGTAAC
*
26709062 AAAAAACACAGT
1 AAAAAACACAAT
26709074 AAAAAACACAAT
1 AAAAAACACAAT
26709086 AAAAAA
1 AAAAAA
26709092 ATCTCATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.77, C:0.13, G:0.03, T:0.07
Consensus pattern (12 bp):
AAAAAACACAAT
Found at i:26709559 original size:102 final size:101
Alignment explanation
Indices: 26709443--26710002 Score: 491
Period size: 107 Copynumber: 5.2 Consensus size: 101
26709433 ATTAATTTAA
*
26709443 AAAATACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTTTAA
1 AAAACACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTTTAA
26709508 AATAATTA-AAAAAATTTACATTCATAACAAATCAC
66 AATAATTACAAAAAATTTACATTCATAACAAATCAC
*
26709543 AATAAACACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAATAAAATAAACTT
1 -A-AAACACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACAAAAT-AACTT
** *
26709608 TCAAACAATTAAAAACAAAAAAACAAAAAATTTTACATTCATAAAAAATCAC
63 T--AA-AA-T--------AATTACAAAAAA-TTTACATTCATAACAAATCAC
* * * *
26709660 AATAAACATTAAACTAAACACACACAAACAATTTATAACCTAACCATAAATTAATAGCAAAATAA
1 -A-AAACACTAAACT--A-A-ACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATAA
* *
26709725 CTTTAAAATAATTTAAAAATACAAAAAAATTACATTCATAAGAAATCAC
60 CTTTAAAATAA--T-----TACAAAAAATTTACATTCATAACAAATCAC
* * *
26709774 AAAACACTAAACTAAACACAAATAATTTATAACATAATCA-AAATTACTAACAAAATTAA-TATA
1 AAAACACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACAAAA-TAACTTTA
* * *
26709837 AAATAATTAAGAAAACAAAAAATGTAAATTAATAA-AAATTCAC
65 AAATAATT------ACAAAAAATTTACATTCATAACAAA-TCAC
* * *
26709880 AAAACACTAAATTCAACACAAACAATTTATAACCTAAT-AAAACATTACTAACAAAAATAACTTT
1 AAAACACTAAACTAAACACAAACAATTTATAACCTAATCATAA-ATTACTAAC-AAAATAACTTT
* *
26709944 AAAATAATTAAAAAATAAAAAATTTACTTTCATAACAAATCAC
64 AAAATAATT-----ACAAAAAATTTACATTCATAACAAATCAC
26709987 AAAACACTAAACTAAA
1 AAAACACTAAACTAAA
26710003 TAAAAAATTA
Statistics
Matches: 381, Mismatches: 38, Indels: 74
0.77 0.08 0.15
Matches are distributed among these distances:
100 1 0.00
101 1 0.00
102 54 0.14
103 6 0.02
105 7 0.02
106 59 0.15
107 73 0.19
108 45 0.12
109 1 0.00
110 1 0.00
112 11 0.03
113 1 0.00
114 19 0.05
115 11 0.03
116 7 0.02
117 36 0.09
118 2 0.01
119 1 0.00
120 7 0.02
121 38 0.10
ACGTcount: A:0.59, C:0.15, G:0.01, T:0.25
Consensus pattern (101 bp):
AAAACACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTTTAA
AATAATTACAAAAAATTTACATTCATAACAAATCAC
Done.