Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 92 of 228
Found at i:26709841 original size:107 final size:107
Alignment explanation
Indices: 26709515--26710002 Score: 520
Period size: 107 Copynumber: 4.4 Consensus size: 107
26709505 TAAAATAATT
26709515 AAAAAAATTTACATTCATAACAAATCACAATAAACACTAAACTAAACACAAACAATTTATAACCT
1 AAAAAAA-TTACATTCATAACAAATCAC-A-AAACACTAAACTAAACACAAACAATTTATAACCT
* * **
26709580 AATCATAAATTACTAATAAAATAAACTTTCAAACAATTAAAAACAAAAAAAC
63 AATCATAAATTACTAACAAAATTAACTTT--AA-AA-T---AATTAAAAAAC
* * *
26709632 AAAAAATTTTACATTCATAAAAAATCACAATAAACATTAAACTAAACACACACAAACAATTTATA
1 AAAAAA-ATTACATTCATAACAAATCAC-A-AAACACTAAACT--A-A-ACACAAACAATTTATA
* * *
26709697 ACCTAACCATAAATTAATAGCAAAA-TAACTTTAAAATAATTTAAAAATAC
59 ACCTAATCATAAATTACTAACAAAATTAACTTTAAAATAA-TTAAAAA-AC
* * *
26709747 AAAAAAATTACATTCATAAGAAATCACAAAACACTAAACTAAACACAAATAATTTATAACATAAT
1 AAAAAAATTACATTCATAACAAATCACAAAACACTAAACTAAACACAAACAATTTATAACCTAAT
*
26709812 CA-AAATTACTAACAAAATTAA-TATAAAATAATTAAGAAAAC
66 CATAAATTACTAACAAAATTAACTTTAAAATAATTAA-AAAAC
* * * *
26709853 -AAAAAATGTAAATTAATAA-AAATTCACAAAACACTAAATTCAACACAAACAATTTATAACCTA
1 AAAAAAAT-TACATTCATAACAAA-TCACAAAACACTAAACTAAACACAAACAATTTATAACCTA
* * *
26709916 AT-AAAACATTACTAACAAAAATAACTTTAAAATAATTAAAAAAT
64 ATCATAA-ATTACTAACAAAATTAACTTTAAAATAATTAAAAAAC
* *
26709960 AAAAAATTTACTTTCATAACAAATCACAAAACACTAAACTAAA
1 AAAAAAATTACATTCATAACAAATCACAAAACACTAAACTAAA
26710003 TAAAAAATTA
Statistics
Matches: 321, Mismatches: 34, Indels: 42
0.81 0.09 0.11
Matches are distributed among these distances:
105 11 0.03
106 55 0.17
107 71 0.22
108 47 0.15
109 1 0.00
110 1 0.00
112 11 0.03
113 3 0.01
114 24 0.07
115 8 0.02
116 1 0.00
117 41 0.13
118 2 0.01
119 1 0.00
120 7 0.02
121 37 0.12
ACGTcount: A:0.60, C:0.15, G:0.01, T:0.24
Consensus pattern (107 bp):
AAAAAAATTACATTCATAACAAATCACAAAACACTAAACTAAACACAAACAATTTATAACCTAAT
CATAAATTACTAACAAAATTAACTTTAAAATAATTAAAAAAC
Found at i:26710071 original size:20 final size:19
Alignment explanation
Indices: 26710042--26710127 Score: 77
Period size: 20 Copynumber: 4.3 Consensus size: 19
26710032 AATTAATTAC
26710042 CTTT-TTTCTTTCTCTTTTT
1 CTTTCTTTC-TTCTCTTTTT
*
26710061 CTTTCTTTCTTCTTCTTTTC
1 CTTTCTTTCTTC-TCTTTTT
26710081 CTTTCTTTCTTCTCCTTCTTCT
1 CTTTCTTTCTTCT-CTT-TT-T
*
26710103 CCTTTCTTTC-CCTCTTTTT
1 -CTTTCTTTCTTCTCTTTTT
*
26710122 TTTTCT
1 CTTTCT
26710128 CACTAGCAAC
Statistics
Matches: 57, Mismatches: 4, Indels: 13
0.77 0.05 0.18
Matches are distributed among these distances:
18 5 0.09
19 9 0.16
20 27 0.47
21 5 0.09
22 2 0.04
23 9 0.16
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (19 bp):
CTTTCTTTCTTCTCTTTTT
Found at i:26710098 original size:23 final size:24
Alignment explanation
Indices: 26710058--26710112 Score: 85
Period size: 23 Copynumber: 2.3 Consensus size: 24
26710048 TCTTTCTCTT
* *
26710058 TTTCTTTCTTTCTTCTTCTTTTCC
1 TTTCTTTCTTTCTCCTTCTTCTCC
26710082 TTTCTTTC-TTCTCCTTCTTCTCC
1 TTTCTTTCTTTCTCCTTCTTCTCC
26710105 TTTCTTTC
1 TTTCTTTC
26710113 CCTCTTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 21 0.72
24 8 0.28
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (24 bp):
TTTCTTTCTTTCTCCTTCTTCTCC
Found at i:26726446 original size:13 final size:13
Alignment explanation
Indices: 26726430--26726482 Score: 97
Period size: 13 Copynumber: 4.1 Consensus size: 13
26726420 TTTAAACCAA
*
26726430 ACTTTTCAAAAGT
1 ACTTTTCAAAAGC
26726443 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
26726456 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
26726469 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
26726482 A
1 A
26726483 ATGAAGAATT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
13 39 1.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.32
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:26729192 original size:19 final size:19
Alignment explanation
Indices: 26729168--26729236 Score: 66
Period size: 19 Copynumber: 3.4 Consensus size: 19
26729158 ATTCCAAAAA
26729168 TAATATTATTTTAATAATT
1 TAATATTATTTTAATAATT
**
26729187 TAATATTAAATTAATACTTATCT
1 TAATATTATTTTAATA---AT-T
* *
26729210 TAATAATATTTTATTAATT
1 TAATATTATTTTAATAATT
26729229 TAATATTA
1 TAATATTA
26729237 AAGTGATTAT
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
19 22 0.56
20 2 0.05
22 2 0.05
23 13 0.33
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (19 bp):
TAATATTATTTTAATAATT
Found at i:26729213 original size:31 final size:30
Alignment explanation
Indices: 26729168--26729236 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 30
26729158 ATTCCAAAAA
*
26729168 TAATATTATTTTAATAAT-TTAATATTAAAT
1 TAATATTATCTTAATAATATT-ATATTAAAT
* *
26729198 TAATACTTATCTTAATAATATTTTATTAATT
1 TAATA-TTATCTTAATAATATTATATTAAAT
26729229 TAATATTA
1 TAATATTA
26729237 AAGTGATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 8 0.24
31 24 0.71
32 2 0.06
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (30 bp):
TAATATTATCTTAATAATATTATATTAAAT
Found at i:26730836 original size:16 final size:18
Alignment explanation
Indices: 26730810--26730842 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
26730800 CTCAACCATA
26730810 ATCACTTTCAT-GATATT
1 ATCACTTTCATAGATATT
26730827 ATCA-TTTCATAGATAT
1 ATCACTTTCATAGATAT
26730843 ATACCTCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.33, C:0.15, G:0.06, T:0.45
Consensus pattern (18 bp):
ATCACTTTCATAGATATT
Found at i:26731870 original size:28 final size:28
Alignment explanation
Indices: 26731830--26731892 Score: 117
Period size: 28 Copynumber: 2.2 Consensus size: 28
26731820 CAGTGACAGT
26731830 ACAGTGTGGGCCTTAGCCCAATACAATA
1 ACAGTGTGGGCCTTAGCCCAATACAATA
*
26731858 ACAGTGTGGGCCTTAGCCCAATACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAATA
26731886 ACAGTGT
1 ACAGTGT
26731893 AGTGCAATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.22
Consensus pattern (28 bp):
ACAGTGTGGGCCTTAGCCCAATACAATA
Found at i:26732274 original size:27 final size:27
Alignment explanation
Indices: 26732254--26732333 Score: 115
Period size: 27 Copynumber: 3.0 Consensus size: 27
26732244 GGGGTATAAT
26732254 AGTAATTTTACCCTATGGGGGTATTTC
1 AGTAATTTTACCCTATGGGGGTATTTC
* * * *
26732281 ATTCATTTTACCTTATGGGAGTATTTC
1 AGTAATTTTACCCTATGGGGGTATTTC
*
26732308 AGTTATTTTACCCTATGGGGGTATTT
1 AGTAATTTTACCCTATGGGGGTATTT
26732334 TTGTCATTTT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.21, C:0.14, G:0.20, T:0.45
Consensus pattern (27 bp):
AGTAATTTTACCCTATGGGGGTATTTC
Found at i:26732342 original size:27 final size:27
Alignment explanation
Indices: 26732258--26732343 Score: 104
Period size: 27 Copynumber: 3.2 Consensus size: 27
26732248 TATAATAGTA
26732258 ATTTTACCCTATGGGGGTATTTCAT-TC
1 ATTTTACCCTATGGGGGTATTT-ATGTC
* * *
26732285 ATTTTACCTTATGGGAGTATTTCA-GTT
1 ATTTTACCCTATGGGGGTATTT-ATGTC
*
26732312 ATTTTACCCTATGGGGGTATTTTTGTC
1 ATTTTACCCTATGGGGGTATTTATGTC
26732339 ATTTT
1 ATTTT
26732344 CATCTATTAG
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.19, C:0.14, G:0.19, T:0.49
Consensus pattern (27 bp):
ATTTTACCCTATGGGGGTATTTATGTC
Found at i:26736166 original size:24 final size:25
Alignment explanation
Indices: 26736139--26736186 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
26736129 GTTAGTGCTA
* *
26736139 AATATGATTTATG-TACGTATGATT
1 AATATGATATATGCTAAGTATGATT
*
26736163 AATATGCTATATGCTAAGTATGAT
1 AATATGATATATGCTAAGTATGAT
26736187 CTGTATTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.35, C:0.06, G:0.17, T:0.42
Consensus pattern (25 bp):
AATATGATATATGCTAAGTATGATT
Found at i:26736231 original size:21 final size:21
Alignment explanation
Indices: 26736172--26736231 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
26736162 TAATATGCTA
*
26736172 TATGCTAAGTATGATCTGTAT
1 TATGCTAAGTATGATTTGTAT
* *
26736193 TATGTTAAGTATGCTTTGTTAT
1 TATGCTAAGTATGATTTG-TAT
*
26736215 T-TGCTAAGCATGATTTG
1 TATGCTAAGTATGATTTG
26736232 AATTCTACAG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 28 0.88
22 4 0.12
ACGTcount: A:0.25, C:0.08, G:0.20, T:0.47
Consensus pattern (21 bp):
TATGCTAAGTATGATTTGTAT
Found at i:26740836 original size:23 final size:22
Alignment explanation
Indices: 26740778--26740853 Score: 89
Period size: 23 Copynumber: 3.3 Consensus size: 22
26740768 AATAAATAAT
*
26740778 TTGCACCGAAGTGCCATTGTCAC
1 TTGCA-CGAAGTGCCACTGTCAC
*
26740801 TTGCACAAGAGTGCCACTGTCAC
1 TTGCACGA-AGTGCCACTGTCAC
* *
26740824 TTGCATCGAAGTGTCACTATCAC
1 TTGCA-CGAAGTGCCACTGTCAC
26740847 TTGCACG
1 TTGCACG
26740854 CATGAAAATT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
22 4 0.09
23 40 0.87
24 2 0.04
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (22 bp):
TTGCACGAAGTGCCACTGTCAC
Found at i:26742785 original size:25 final size:25
Alignment explanation
Indices: 26742751--26742811 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
26742741 CCCATAACTT
* *
26742751 GTGTGAGCATTTACCGTCACAGCTC
1 GTGTGAGCATTTAACGTCACAGATC
* *
26742776 GTGTGAGCATTTAACGTCATAGATT
1 GTGTGAGCATTTAACGTCACAGATC
26742801 GTGTGAGCATT
1 GTGTGAGCATT
26742812 ATTCCCGTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (25 bp):
GTGTGAGCATTTAACGTCACAGATC
Found at i:26742873 original size:13 final size:13
Alignment explanation
Indices: 26742855--26742926 Score: 74
Period size: 13 Copynumber: 5.5 Consensus size: 13
26742845 TCATTAGGTG
26742855 GAAATGGATATAT
1 GAAATGGATATAT
*
26742868 GAAATGGTTATAT
1 GAAATGGATATAT
*
26742881 GAAAATGGATATTT
1 G-AAATGGATATAT
*
26742895 GAAATGGAT-TCTT
1 GAAATGGATAT-AT
* *
26742908 GAAATGGAAATGT
1 GAAATGGATATAT
26742921 GAAATG
1 GAAATG
26742927 TTAAATGAAT
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
12 1 0.02
13 38 0.75
14 12 0.24
ACGTcount: A:0.42, C:0.01, G:0.25, T:0.32
Consensus pattern (13 bp):
GAAATGGATATAT
Found at i:26742892 original size:27 final size:27
Alignment explanation
Indices: 26742856--26742935 Score: 85
Period size: 27 Copynumber: 3.0 Consensus size: 27
26742846 CATTAGGTGG
26742856 AAATGGATATATGAAATGGTTATATGA
1 AAATGGATATATGAAATGGTTATATGA
* *
26742883 AAATGGATATTTGAAATGGATTCT-TG-
1 AAATGGATATATGAAATGG-TTATATGA
* * *
26742909 AAATGGAAATGTGAAAT-GTTAAATGA
1 AAATGGATATATGAAATGGTTATATGA
26742935 A
1 A
26742936 TATGTGATGG
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
24 2 0.05
25 3 0.07
26 16 0.36
27 20 0.45
28 3 0.07
ACGTcount: A:0.44, C:0.01, G:0.23, T:0.33
Consensus pattern (27 bp):
AAATGGATATATGAAATGGTTATATGA
Found at i:26749865 original size:23 final size:22
Alignment explanation
Indices: 26749822--26749865 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
26749812 TTCTAAGTTG
26749822 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
26749845 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
26749866 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:26749979 original size:45 final size:45
Alignment explanation
Indices: 26749912--26750003 Score: 139
Period size: 45 Copynumber: 2.0 Consensus size: 45
26749902 CAGATACTCA
* * * *
26749912 GTGGATTCAGTACATAGTAACCACCTTATTAATCAATGATGTCCG
1 GTGGAATCAATACATAGCAACCACCTTACTAATCAATGATGTCCG
*
26749957 GTGGAATCAATACATAGCAACCACCTTACTAATCAATGATGTTCG
1 GTGGAATCAATACATAGCAACCACCTTACTAATCAATGATGTCCG
26750002 GT
1 GT
26750004 TCACATAGTA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (45 bp):
GTGGAATCAATACATAGCAACCACCTTACTAATCAATGATGTCCG
Found at i:26750068 original size:51 final size:50
Alignment explanation
Indices: 26750009--26750195 Score: 223
Period size: 51 Copynumber: 3.7 Consensus size: 50
26749999 TCGGTTCACA
** *
26750009 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGACACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCA-TACCATCCGGTACGCG
* * * * *
26750060 TAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACATGTGA-CCATACCATCCGGTACGCG
* * *
26750111 TAGTAGCCTGCACATAGTACTGCACATGCGACC-TATCATTCCGGTACGCG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATACCA-TCCGGTACGCG
* *
26750161 TAGTAGCCTGCACATATTACTACACAAGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACATGTGACCAT
26750196 CACTTTCACT
Statistics
Matches: 113, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
49 2 0.02
50 40 0.35
51 69 0.61
52 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATACCATCCGGTACGCG
Found at i:26750215 original size:101 final size:99
Alignment explanation
Indices: 26750006--26750191 Score: 248
Period size: 101 Copynumber: 1.8 Consensus size: 99
26749996 TGTTCGGTTC
*
26750006 ACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGACACACGTAGTAGCCTGC
1 ACATAGTAGCCTGCACATAGTACTACACATGCGACCA-TACCATCCGACACACGTAGTAGCCTGC
* *
26750071 ACATAGTACTACACACGTGATCGAAACTATCCGGT
65 ACATAGTACTACACAAGTGATCCAAACTATCCGGT
* * ** *
26750106 ACGCATAGTAGCCTGCACATAGTACTGCACATGCGACC-TATCATTCCGGTACGCGTAGTAGCCT
1 A--CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCA-TCCGACACACGTAGTAGCCT
*
26750170 GCACATATTACTACACAAGTGA
63 GCACATAGTACTACACAAGTGA
26750192 CCATCACTTT
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
100 5 0.07
101 37 0.49
102 33 0.44
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (99 bp):
ACATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATCCGACACACGTAGTAGCCTGCA
CATAGTACTACACAAGTGATCCAAACTATCCGGT
Found at i:26755368 original size:67 final size:67
Alignment explanation
Indices: 26755260--26755391 Score: 237
Period size: 67 Copynumber: 2.0 Consensus size: 67
26755250 TTTCTAATTC
*
26755260 AGAGAGCACACTCGCGCGAACCTCATTTCTTATAGCGGGATTACCAATCCAGGCTAAATCCCCTG
1 AGAGAGCACACTCCCGCGAACCTCATTTCTTATAGCGGGATTACCAATCCAGGCTAAATCCCCTG
26755325 CA
66 CA
* *
26755327 AGAGAGCACACTCCCGCGAATCTCATTTCTTATAGCGGGATTACCAGTCCAGGCTAAATCCCCTG
1 AGAGAGCACACTCCCGCGAACCTCATTTCTTATAGCGGGATTACCAATCCAGGCTAAATCCCCTG
26755392 TAATATAAAC
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 62 1.00
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.22
Consensus pattern (67 bp):
AGAGAGCACACTCCCGCGAACCTCATTTCTTATAGCGGGATTACCAATCCAGGCTAAATCCCCTG
CA
Found at i:26755606 original size:57 final size:57
Alignment explanation
Indices: 26755513--26755622 Score: 143
Period size: 57 Copynumber: 1.9 Consensus size: 57
26755503 ACCCTAATTC
* *
26755513 AGATTACCCATCCGGGCTAAATCCATTTTCCACATATTCTTCGGAAGGGCTATATCA
1 AGATCACCCATCCGGGCTAAATCCATTTTCCACATATTATTCGGAAGGGCTATATCA
* * *
26755570 AGATCACCCATCCGGGCTAGAT-C-TTTTCCACACATATTATTTGGGAGGGCTAT
1 AGATCACCCATCCGGGCTAAATCCATTTT-C-CACATATTATTCGGAAGGGCTAT
26755623 GTCAGGATAG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
55 4 0.09
56 2 0.04
57 40 0.87
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.30
Consensus pattern (57 bp):
AGATCACCCATCCGGGCTAAATCCATTTTCCACATATTATTCGGAAGGGCTATATCA
Found at i:26765661 original size:21 final size:21
Alignment explanation
Indices: 26765637--26765684 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
26765627 TCTATTCACC
26765637 GAAAGGATGAATGTTTTTGAG
1 GAAAGGATGAATGTTTTTGAG
*
26765658 GAAAAGATGAATGTTTTTGAG
1 GAAAGGATGAATGTTTTTGAG
26765679 GAAAGG
1 GAAAGG
26765685 GGGAATGATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.38, C:0.00, G:0.33, T:0.29
Consensus pattern (21 bp):
GAAAGGATGAATGTTTTTGAG
Found at i:26765690 original size:21 final size:21
Alignment explanation
Indices: 26765645--26765691 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
26765635 CCGAAAGGAT
*
26765645 GAATGTTTTTGAGGAAAAGAT
1 GAATGTTTTTGAGGAAAAGAG
* *
26765666 GAATGTTTTTGAGGAAAGGGG
1 GAATGTTTTTGAGGAAAAGAG
26765687 GAATG
1 GAATG
26765692 ATACATGCAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.36, T:0.30
Consensus pattern (21 bp):
GAATGTTTTTGAGGAAAAGAG
Found at i:26766534 original size:21 final size:19
Alignment explanation
Indices: 26766491--26766541 Score: 66
Period size: 21 Copynumber: 2.6 Consensus size: 19
26766481 TATTTATCCT
26766491 TTATTTTTTAATTTTTTTC
1 TTATTTTTTAATTTTTTTC
* *
26766510 TTATTTTTGTTATTTCTTTTG
1 TTATTTTT-TAATTT-TTTTC
26766531 TTATTTTTTAA
1 TTATTTTTTAA
26766542 ATTTATTTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 8 0.30
20 7 0.26
21 12 0.44
ACGTcount: A:0.16, C:0.04, G:0.04, T:0.76
Consensus pattern (19 bp):
TTATTTTTTAATTTTTTTC
Found at i:26771312 original size:28 final size:29
Alignment explanation
Indices: 26771272--26771406 Score: 188
Period size: 28 Copynumber: 4.8 Consensus size: 29
26771262 TAGTGACAGT
26771272 ACAGTGTGGGCCTTAGCCCAATACA-ATA
1 ACAGTGTGGGCCTTAGCCCAATACAGATA
26771300 ACAGTGTGGGCCTTAGCCCAATACAG-TA
1 ACAGTGTGGGCCTTAGCCCAATACAGATA
*
26771328 ACAATGTGGGCCTTAGCCCAATACAGA-A
1 ACAGTGTGGGCCTTAGCCCAATACAGATA
* * *
26771356 TCAGTATGGGCCTTAACCCAATACAGAT-
1 ACAGTGTGGGCCTTAGCCCAATACAGATA
* *
26771384 TCAGTATGGGCCTTAGCCCAATA
1 ACAGTGTGGGCCTTAGCCCAATA
26771407 TAGTAATAGT
Statistics
Matches: 98, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
28 98 1.00
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.22
Consensus pattern (29 bp):
ACAGTGTGGGCCTTAGCCCAATACAGATA
Found at i:26771548 original size:26 final size:26
Alignment explanation
Indices: 26771519--26771599 Score: 92
Period size: 26 Copynumber: 3.1 Consensus size: 26
26771509 AACACACCAA
26771519 TATCGCAGCAAAGCTGCCAGTAATAG
1 TATCGCAGCAAAGCTGCCAGTAATAG
* * * *
26771545 TATCGTAGTAGAGCTGCCAGT-ATCAA
1 TATCGCAGCAAAGCTGCCAGTAAT-AG
* *
26771571 TATCGCAGCAAAACTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAATAG
26771597 TAT
1 TAT
26771600 ATGTGGCAAA
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
25 2 0.05
26 40 0.93
27 1 0.02
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.22
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTAATAG
Found at i:26771830 original size:27 final size:27
Alignment explanation
Indices: 26771800--26771868 Score: 129
Period size: 27 Copynumber: 2.6 Consensus size: 27
26771790 ACATAAGGCC
*
26771800 ATAACAGTTATTTTATCTCCTAGGGGT
1 ATAACAGTCATTTTATCTCCTAGGGGT
26771827 ATAACAGTCATTTTATCTCCTAGGGGT
1 ATAACAGTCATTTTATCTCCTAGGGGT
26771854 ATAACAGTCATTTTA
1 ATAACAGTCATTTTA
26771869 CCCTATAAGG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (27 bp):
ATAACAGTCATTTTATCTCCTAGGGGT
Found at i:26771880 original size:27 final size:27
Alignment explanation
Indices: 26771820--26771936 Score: 130
Period size: 27 Copynumber: 4.3 Consensus size: 27
26771810 TTTTATCTCC
26771820 TAGGGGTATAACAGTCATTTTATCTCC--
1 TAGGGGTATAACAGTCATTTTA-C-CCTA
26771847 TAGGGGTATAACAGTCATTTTACCCTA
1 TAGGGGTATAACAGTCATTTTACCCTA
* ** *
26771874 TAAGGGTATTTCGGTCATTTTACCCTA
1 TAGGGGTATAACAGTCATTTTACCCTA
* ** *
26771901 TGGGGGTATTTCAGTCATTTTAACCTA
1 TAGGGGTATAACAGTCATTTTACCCTA
26771928 TAGGGGTAT
1 TAGGGGTAT
26771937 TTTGATTATT
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
25 2 0.03
26 1 0.01
27 76 0.96
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (27 bp):
TAGGGGTATAACAGTCATTTTACCCTA
Found at i:26771907 original size:81 final size:81
Alignment explanation
Indices: 26771822--26771990 Score: 198
Period size: 81 Copynumber: 2.1 Consensus size: 81
26771812 TTATCTCCTA
* *
26771822 GGGGTATAACAGTCATTTT-ATCTCCTAGGGGTATAACAG-TCATTTTACCCTATAAGGGTATTT
1 GGGGTATAACAGTCATTTTAACCT-ATAGGGGTAT-ACAGATCATTTTACCCTATAAGGGTATTT
*
26771885 CGGTCATTTTACCCTATG
64 CGATCATTTTACCCTATG
** *** * * *
26771903 GGGGTATTTCAGTCATTTTAACCTATAGGGGTATTTTGATTATTTTACCTTATGAGGGTATTTCG
1 GGGGTATAACAGTCATTTTAACCTATAGGGGTATACAGATCATTTTACCCTATAAGGGTATTTCG
26771968 ATCATTTTACCCTATG
66 ATCATTTTACCCTATG
*
26771984 AGGGTAT
1 GGGGTAT
26771991 TTACCCTATG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
80 1 0.01
81 70 0.95
82 3 0.04
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.40
Consensus pattern (81 bp):
GGGGTATAACAGTCATTTTAACCTATAGGGGTATACAGATCATTTTACCCTATAAGGGTATTTCG
ATCATTTTACCCTATG
Found at i:26771937 original size:27 final size:27
Alignment explanation
Indices: 26771820--26771992 Score: 124
Period size: 27 Copynumber: 6.4 Consensus size: 27
26771810 TTTTATCTCC
** * *
26771820 TAGGGGTATAACAGTCATTTT-ATCTCC
1 TAGGGGTATTTCAGTCATTTTAACCT-A
** *
26771847 TAGGGGTATAACAGTCATTTTACCCTA
1 TAGGGGTATTTCAGTCATTTTAACCTA
* * *
26771874 TAAGGGTATTTCGGTCATTTTACCCTA
1 TAGGGGTATTTCAGTCATTTTAACCTA
*
26771901 TGGGGGTATTTCAGTCATTTTAACCTA
1 TAGGGGTATTTCAGTCATTTTAACCTA
* *
26771928 TAGGGGTATTT-TGATTATTTT-ACCT-
1 TAGGGGTATTTCAG-TCATTTTAACCTA
*
26771953 TATGAGGGTATTTC-GATCATTTTACCCTA
1 TA-G-GGGTATTTCAG-TCATTTTAACCTA
26771982 T-GAGGGTATTT
1 TAG-GGGTATTT
26771993 ACCCTATGGG
Statistics
Matches: 123, Mismatches: 16, Indels: 14
0.80 0.10 0.09
Matches are distributed among these distances:
25 2 0.02
26 6 0.05
27 109 0.89
28 5 0.04
29 1 0.01
ACGTcount: A:0.24, C:0.15, G:0.20, T:0.41
Consensus pattern (27 bp):
TAGGGGTATTTCAGTCATTTTAACCTA
Found at i:26771937 original size:54 final size:54
Alignment explanation
Indices: 26771833--26772182 Score: 253
Period size: 54 Copynumber: 6.6 Consensus size: 54
26771823 GGGTATAACA
** * *
26771833 GTCATTTTATCTCCTA--GGGGTATAACAGTCATTTTACCCTATAAGGGTATTTCG
1 GTCATTTTA-C-CCTATGGGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTTG
*
26771887 GTCATTTTACCCTATGGGGGTATTTCAGTCATTTTAACCTATAGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTTG
* * * * *
26771941 ATTATTTTACCTTATGAGGGTATTTC-GATCATTTTACCCTAT----G-A---GG
1 GTCATTTTACCCTATGGGGGTATTTCAG-TCATTTTACCCTATAGGGGTATTTTG
** *
26771987 GT-A-TTTACCCTATGGGGGTATTTTGGTTATTTTACCCTATTA-GGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTA-TAGGGGTATTTTG
* * ** * * **
26772039 GTCATTTTACCCTATGAGAGTATTTTGGTTATTTTACCCTATGGGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTTG
* * *** * * * *
26772093 GTCATTTT-CATCTATTAGGGGTAAAACAGTCATTTTACCTTTTAAGGGTATTTTA
1 GTCATTTTAC-CCTA-TGGGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTTG
* *
26772148 GTCATTTTACCCTATAGGGGTATTTTAGTCATTTT
1 GTCATTTTACCCTATGGGGGTATTTCAGTCATTTT
26772183 CATCTATTAG
Statistics
Matches: 236, Mismatches: 42, Indels: 36
0.75 0.13 0.11
Matches are distributed among these distances:
44 30 0.13
45 3 0.01
46 2 0.01
48 1 0.00
49 2 0.01
50 1 0.00
52 7 0.03
53 5 0.02
54 147 0.62
55 37 0.16
56 1 0.00
ACGTcount: A:0.22, C:0.15, G:0.19, T:0.44
Consensus pattern (54 bp):
GTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTTG
Found at i:26771995 original size:17 final size:17
Alignment explanation
Indices: 26771973--26772009 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
26771963 TTTCGATCAT
26771973 TTTACCCTATGAGGGTA
1 TTTACCCTATGAGGGTA
*
26771990 TTTACCCTATGGGGGTA
1 TTTACCCTATGAGGGTA
26772007 TTT
1 TTT
26772010 TGGTTATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.19, C:0.16, G:0.24, T:0.41
Consensus pattern (17 bp):
TTTACCCTATGAGGGTA
Found at i:26772007 original size:44 final size:44
Alignment explanation
Indices: 26771946--26772036 Score: 128
Period size: 44 Copynumber: 2.1 Consensus size: 44
26771936 TTTTGATTAT
*
26771946 TTTACCTTATGAGGGTATTTCGATCATTTTACCCTATGAGGGTA
1 TTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGAGGGTA
* * * * *
26771990 TTTACCCTATGGGGGTATTTTGGTTATTTTACCCTATTAGGGTA
1 TTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGAGGGTA
26772034 TTT
1 TTT
26772037 TGGTCATTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.20, C:0.14, G:0.21, T:0.45
Consensus pattern (44 bp):
TTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGAGGGTA
Found at i:26772044 original size:71 final size:71
Alignment explanation
Indices: 26771919--26772063 Score: 218
Period size: 71 Copynumber: 2.0 Consensus size: 71
26771909 TTTCAGTCAT
*
26771919 TTTAACCTATAGGGGTATTTTGATTATTTTACCTTATGAGGGTATTTCGATCATTTTACCCTATG
1 TTTAACCTATAGGGGTATTTTGATTATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATG
*
26771984 AGGGTA
66 AGAGTA
* * * * * *
26771990 TTTACCCTATGGGGGTATTTTGGTTATTTTACCCTATTAGGGTATTTTGGTCATTTTACCCTATG
1 TTTAACCTATAGGGGTATTTTGATTATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATG
26772055 AGAGTA
66 AGAGTA
26772061 TTT
1 TTT
26772064 TGGTTATTTT
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
71 66 1.00
ACGTcount: A:0.21, C:0.13, G:0.20, T:0.46
Consensus pattern (71 bp):
TTTAACCTATAGGGGTATTTTGATTATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATG
AGAGTA
Found at i:26772062 original size:98 final size:98
Alignment explanation
Indices: 26771892--26772090 Score: 274
Period size: 98 Copynumber: 2.0 Consensus size: 98
26771882 TTTCGGTCAT
* *
26771892 TTTACCCTATGGGGGTATTTCAGTCATTTTAACCTATAGGGGTATTTTGATTATTTTACCTTATG
1 TTTACCCTATGGGGGTATTTCAGTCATTTTAACCTATAGGGGTATTTTGATCATTTTACCCTATG
*
26771957 AGGGTATTTCGATCATTTTACCCTATGAGGGTA
66 AGAGTATTTCGATCATTTTACCCTATGAGGGTA
** * * *
26771990 TTTACCCTATGGGGGTATTTTGGTTATTTTACCCTATTA-GGGTATTTTGGTCATTTTACCCTAT
1 TTTACCCTATGGGGGTATTTCAGTCATTTTAACCTA-TAGGGGTATTTTGATCATTTTACCCTAT
* * * *
26772054 GAGAGTATTTTGGTTATTTTACCCTATGGGGGTA
65 GAGAGTATTTCGATCATTTTACCCTATGAGGGTA
26772088 TTT
1 TTT
26772091 CAGTCATTTT
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
98 86 0.98
99 2 0.02
ACGTcount: A:0.20, C:0.14, G:0.21, T:0.45
Consensus pattern (98 bp):
TTTACCCTATGGGGGTATTTCAGTCATTTTAACCTATAGGGGTATTTTGATCATTTTACCCTATG
AGAGTATTTCGATCATTTTACCCTATGAGGGTA
Found at i:26772087 original size:125 final size:125
Alignment explanation
Indices: 26771865--26772100 Score: 323
Period size: 125 Copynumber: 1.9 Consensus size: 125
26771855 TAACAGTCAT
*
26771865 TTTACCCTATAAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCAGTCATTTTAACCTATA
1 TTTACCCTATAAGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCAGTCATTTTAACCTATA
* *
26771930 GGGGTATTTTGATTATTTTACCTTATGAGGGTATTTC-GATCATTTTACCCTATGAGGGTA
66 GGAGTATTTTGATTATTTTACCCTATGAGGGTATTTCAG-TCATTTTACCCTATGAGGGTA
** * * * ** *
26771990 TTTACCCTATGGGGGTATTTTGGTTATTTTACCCTATTAGGGTATTTTGGTCATTTTACCCTAT-
1 TTTACCCTATAAGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCAGTCATTTTAACCTATA
* *
26772054 GAGAGTATTTTGGTTATTTTACCCTATGGGGGTATTTCAGTCATTTT
66 G-GAGTATTTTGATTATTTTACCCTATGAGGGTATTTCAGTCATTTT
26772101 CATCTATTAG
Statistics
Matches: 96, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
124 1 0.01
125 94 0.98
126 1 0.01
ACGTcount: A:0.20, C:0.14, G:0.20, T:0.45
Consensus pattern (125 bp):
TTTACCCTATAAGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCAGTCATTTTAACCTATA
GGAGTATTTTGATTATTTTACCCTATGAGGGTATTTCAGTCATTTTACCCTATGAGGGTA
Found at i:26772099 original size:27 final size:27
Alignment explanation
Indices: 26771990--26772182 Score: 176
Period size: 27 Copynumber: 7.1 Consensus size: 27
26771980 TATGAGGGTA
* * *
26771990 TTTACCCTATGGGGGTATTTTGGTTAT
1 TTTACCCTATAGGGGTATTTTAGTCAT
*
26772017 TTTACCCTATTA-GGGTATTTTGGTCAT
1 TTTACCCTA-TAGGGGTATTTTAGTCAT
* * *
26772044 TTTACCCTAT-GAGAGTATTTTGGTTAT
1 TTTACCCTATAG-GGGTATTTTAGTCAT
* *
26772071 TTTACCCTATGGGGGTATTTCAGTCAT
1 TTTACCCTATAGGGGTATTTTAGTCAT
* ****
26772098 TTT-CATCTATTAGGGGTAAAACAGTCAT
1 TTTAC-CCTA-TAGGGGTATTTTAGTCAT
* * *
26772126 TTTACCTTTTAAGGGTATTTTAGTCAT
1 TTTACCCTATAGGGGTATTTTAGTCAT
26772153 TTTACCCTATAGGGGTATTTTAGTCAT
1 TTTACCCTATAGGGGTATTTTAGTCAT
26772180 TTT
1 TTT
26772183 CATCTATTAG
Statistics
Matches: 135, Mismatches: 24, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.01
27 112 0.83
28 20 0.15
29 1 0.01
ACGTcount: A:0.21, C:0.13, G:0.19, T:0.46
Consensus pattern (27 bp):
TTTACCCTATAGGGGTATTTTAGTCAT
Found at i:26772161 original size:82 final size:81
Alignment explanation
Indices: 26772039--26772239 Score: 285
Period size: 82 Copynumber: 2.5 Consensus size: 81
26772029 GGGTATTTTG
* * * *
26772039 GTCATTTTACCCTATGAGAGTATTTTGGTTATTTTACCCTATGGGGGTATTTCAGTCATTTTCAT
1 GTCATTTTA-CCTTTAAGGGTATTTTGGTTATTTTACCCTATAGGGGTATTTCAGTCATTTTCAT
26772104 CTATTAGGGGTAAAACA
65 CTATTAGGGGTAAAACA
* * *
26772121 GTCATTTTACCTTTTAAGGGTATTTTAGTCATTTTACCCTATAGGGGTATTTTAGTCATTTTCAT
1 GTCATTTTACC-TTTAAGGGTATTTTGGTTATTTTACCCTATAGGGGTATTTCAGTCATTTTCAT
*
26772186 CTATTAGGGGTAAAATA
65 CTATTAGGGGTAAAACA
* * *
26772203 GTCATTTTATCTTTCAGGTTATTTTGGTTATTTTACC
1 GTCATTTTACCTTTAAGGGTATTTTGGTTATTTTACC
26772240 TATTTTGGGG
Statistics
Matches: 105, Mismatches: 13, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
81 24 0.23
82 81 0.77
ACGTcount: A:0.23, C:0.13, G:0.17, T:0.46
Consensus pattern (81 bp):
GTCATTTTACCTTTAAGGGTATTTTGGTTATTTTACCCTATAGGGGTATTTCAGTCATTTTCATC
TATTAGGGGTAAAACA
Found at i:26772189 original size:27 final size:26
Alignment explanation
Indices: 26771996--26772214 Score: 118
Period size: 27 Copynumber: 8.1 Consensus size: 26
26771986 GGTATTTACC
* * * *
26771996 CTATGGGGGTATTTTGGTTATTTTACC
1 CTATAGGGGTATTTTAGTCATTTTA-T
* *
26772023 CTATTA-GGGTATTTTGGTCATTTTACC
1 CTA-TAGGGGTATTTTAGTCATTTTA-T
* * * *
26772050 CTAT-GAGAGTATTTTGGTTATTTTACC
1 CTATAG-GGGTATTTTAGTCATTTTA-T
* *
26772077 CTATGGGGGTATTTCAGTCATTTTCAT
1 CTATAGGGGTATTTTAGTCATTTT-AT
**** *
26772104 CTATTAGGGGTAAAACAGTCATTTTAC
1 CTA-TAGGGGTATTTTAGTCATTTTAT
* * *
26772131 CTTTTAAGGGTATTTTAGTCATTTTACC
1 C-TATAGGGGTATTTTAGTCATTTTA-T
26772159 CTATAGGGGTATTTTAGTCATTTTCAT
1 CTATAGGGGTATTTTAGTCATTTT-AT
***
26772186 CTATTAGGGGTAAAATAGTCATTTTAT
1 CTA-TAGGGGTATTTTAGTCATTTTAT
26772213 CT
1 CT
26772215 TTCAGGTTAT
Statistics
Matches: 156, Mismatches: 26, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
26 1 0.01
27 113 0.72
28 42 0.27
ACGTcount: A:0.23, C:0.13, G:0.19, T:0.45
Consensus pattern (26 bp):
CTATAGGGGTATTTTAGTCATTTTAT
Found at i:26772491 original size:17 final size:18
Alignment explanation
Indices: 26772469--26772503 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
26772459 TATCCGTATA
26772469 GGGCCCACA-AGCCCATT
1 GGGCCCACACAGCCCATT
26772486 GGGCCCACACAGCCCATT
1 GGGCCCACACAGCCCATT
26772504 TCAGCCCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.23, C:0.43, G:0.23, T:0.11
Consensus pattern (18 bp):
GGGCCCACACAGCCCATT
Found at i:26772510 original size:19 final size:19
Alignment explanation
Indices: 26772471--26772529 Score: 52
Period size: 20 Copynumber: 3.2 Consensus size: 19
26772461 TCCGTATAGG
**
26772471 GCCCACA-AGCCCA-TTGG
1 GCCCACACAGCCCATTTCA
26772488 GCCCACACAGCCCATTTCA
1 GCCCACACAGCCCATTTCA
*
26772507 GCCCA-ACGTGGCCCATTTCA
1 GCCCACAC--AGCCCATTTCA
26772527 GCC
1 GCC
26772530 TAAGCCCATG
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
17 7 0.20
18 8 0.23
19 7 0.20
20 13 0.37
ACGTcount: A:0.22, C:0.44, G:0.19, T:0.15
Consensus pattern (19 bp):
GCCCACACAGCCCATTTCA
Found at i:26775944 original size:26 final size:26
Alignment explanation
Indices: 26775899--26775974 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 26
26775889 TCACATCCTT
*
26775899 ATTTTACCC-CAGTAAAATTTTGATG
1 ATTTTACCCTCGGTAAAATTTTGATG
26775924 ATTTTACCCTCGGTAAAATTTTTGATG
1 ATTTTACCCTCGGTAAAA-TTTTGATG
*
26775951 AATTTA-CCTCTGGTAAAATTTTGA
1 ATTTTACCCTC-GGTAAAATTTTGA
26775975 AAAAATATAT
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
25 9 0.20
26 17 0.37
27 20 0.43
ACGTcount: A:0.30, C:0.14, G:0.13, T:0.42
Consensus pattern (26 bp):
ATTTTACCCTCGGTAAAATTTTGATG
Found at i:26790506 original size:22 final size:22
Alignment explanation
Indices: 26790438--26790518 Score: 76
Period size: 24 Copynumber: 3.7 Consensus size: 22
26790428 ACCCAACTTC
*
26790438 TCCTTGATT-TC-CTAATATGT
1 TCCTTGATTCTCTCTAGTATGT
* *
26790458 TCCTTGATTCTCTCCCAGTGATTT
1 TCCTTGATTCTCT-CTAGT-ATGT
*
26790482 TCCTTGATTCTCTCTAGTAGGT
1 TCCTTGATTCTCTCTAGTATGT
* *
26790504 TCCTTCATTTTCTCT
1 TCCTTGATTCTCTCT
26790519 TCCTCCAAGC
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
20 9 0.18
21 2 0.04
22 15 0.31
23 7 0.14
24 16 0.33
ACGTcount: A:0.14, C:0.26, G:0.11, T:0.49
Consensus pattern (22 bp):
TCCTTGATTCTCTCTAGTATGT
Found at i:26794102 original size:2 final size:2
Alignment explanation
Indices: 26794095--26794128 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
26794085 TTTATGGTTA
26794095 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
26794129 GGTGGGTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:26797253 original size:86 final size:87
Alignment explanation
Indices: 26797106--26797268 Score: 247
Period size: 86 Copynumber: 1.9 Consensus size: 87
26797096 CTATAACCTT
* *
26797106 CCTTTTCTCTTCTCTTTGAGGACAACTAACCTTCCTGTTCACTCAGGGCCTCCAAGAAACACATC
1 CCTTTTCTCTTCTCTTT-AGGACAACTAACCTTCCTGTTCACTCAAGGCCTCCAAGAAACACATA
26797171 CAAATATCACACTGGACAGTAAC
65 CAAATATCACACTGGACAGTAAC
* * * * *
26797194 CCTTTTCTCTTCTCTTT-GGACAAGTAACCTTCCTGTTCTCTCAATGCTTCCATGAAACACATAC
1 CCTTTTCTCTTCTCTTTAGGACAACTAACCTTCCTGTTCACTCAAGGCCTCCAAGAAACACATAC
26797258 AAATATCACAC
66 AAATATCACAC
26797269 CAGACAGGGC
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
86 51 0.75
88 17 0.25
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (87 bp):
CCTTTTCTCTTCTCTTTAGGACAACTAACCTTCCTGTTCACTCAAGGCCTCCAAGAAACACATAC
AAATATCACACTGGACAGTAAC
Found at i:26798827 original size:9 final size:9
Alignment explanation
Indices: 26798798--26798834 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
26798788 TGAGTTTTTG
26798798 AATTCGAAT
1 AATTCGAAT
*
26798807 AACTCGAAT
1 AATTCGAAT
26798816 AATTCGAAT
1 AATTCGAAT
*
26798825 AATTCTAAT
1 AATTCGAAT
26798834 A
1 A
26798835 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.46, C:0.14, G:0.08, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:26799080 original size:30 final size:31
Alignment explanation
Indices: 26799046--26799105 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
26799036 AAACCTTTTA
*
26799046 TTTTCTCCC-AAAATTTTTACTCCC-TCCCAC
1 TTTTC-CCCTAAAACTTTTACTCCCTTCCCAC
*
26799076 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCTAAAACTTTTACTCCCTTCCCA
26799106 TCCCACCTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 3 0.12
30 18 0.69
31 5 0.19
ACGTcount: A:0.20, C:0.38, G:0.00, T:0.42
Consensus pattern (31 bp):
TTTTCCCCTAAAACTTTTACTCCCTTCCCAC
Found at i:26800152 original size:20 final size:20
Alignment explanation
Indices: 26800127--26800212 Score: 84
Period size: 20 Copynumber: 4.2 Consensus size: 20
26800117 TATTTTTAGT
26800127 GATTTACCAAAATTTATAAA
1 GATTTACCAAAATTTATAAA
* *
26800147 GCTTTACCAAAAAATTAT-AA
1 GATTTACC-AAAATTTATAAA
* * *
26800167 GAATTTACCAATACTTCTAAA
1 G-ATTTACCAAAATTTATAAA
* *
26800188 GATTTACCAATATTTTTAAA
1 GATTTACCAAAATTTATAAA
26800208 GATTT
1 GATTT
26800213 TCTTGGTGCC
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
20 38 0.69
21 17 0.31
ACGTcount: A:0.44, C:0.13, G:0.06, T:0.37
Consensus pattern (20 bp):
GATTTACCAAAATTTATAAA
Found at i:26800314 original size:19 final size:19
Alignment explanation
Indices: 26800252--26800315 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
26800242 CATTTTGGCA
*
26800252 TACCAAAATTCCTAAAGATT
1 TACCAAAATT-CTAAGGATT
*
26800272 TACCAAAAATTATAAGG-TT
1 TACC-AAAATTCTAAGGATT
*
26800291 ATACCAGAATTCTAAGGATT
1 -TACCAAAATTCTAAGGATT
26800311 TACCA
1 TACCA
26800316 TATAATACCT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
19 17 0.46
20 14 0.38
21 6 0.16
ACGTcount: A:0.44, C:0.17, G:0.09, T:0.30
Consensus pattern (19 bp):
TACCAAAATTCTAAGGATT
Found at i:26803951 original size:26 final size:26
Alignment explanation
Indices: 26803896--26803969 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 26
26803886 TCTCATCCCT
* *
26803896 ATTTTACCCCTAGCAAAATTTTGAAG
1 ATTTTACCCCTAGTAAAATTTTGAAC
*
26803922 ATTTTACCCCTAGTAAAATTTTGACC
1 ATTTTACCCCTAGTAAAATTTTGAAC
* **
26803948 ATTTTTCCTTTAGTAAAATTTT
1 ATTTTACCCCTAGTAAAATTTT
26803970 AAGAAAACAT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.31, C:0.18, G:0.08, T:0.43
Consensus pattern (26 bp):
ATTTTACCCCTAGTAAAATTTTGAAC
Found at i:26809723 original size:24 final size:26
Alignment explanation
Indices: 26809699--26809748 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
26809689 ACAACTCATT
26809699 AATTAAAAATATT-TTTAAATAATTAA
1 AATTAAAAATATTATTTAAATAATT-A
*
26809725 AATTAAAAATATTATTTTAATAAT
1 AATTAAAAATATTATTTAAATAAT
26809749 ATTACATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (26 bp):
AATTAAAAATATTATTTAAATAATTA
Found at i:26809896 original size:64 final size:64
Alignment explanation
Indices: 26809816--26809936 Score: 233
Period size: 64 Copynumber: 1.9 Consensus size: 64
26809806 AAATAAAATA
*
26809816 AAAATTTGATCATTAGATATAATCAAGTAAACAACTTGATTAAAAAACAAATATTCAATATATT
1 AAAATTGGATCATTAGATATAATCAAGTAAACAACTTGATTAAAAAACAAATATTCAATATATT
26809880 AAAATTGGATCATTAGATATAATCAAGTAAACAACTTGATTAAAAAACAAATATTCA
1 AAAATTGGATCATTAGATATAATCAAGTAAACAACTTGATTAAAAAACAAATATTCA
26809937 TTGTTATTAT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.52, C:0.10, G:0.07, T:0.31
Consensus pattern (64 bp):
AAAATTGGATCATTAGATATAATCAAGTAAACAACTTGATTAAAAAACAAATATTCAATATATT
Found at i:26813194 original size:47 final size:47
Alignment explanation
Indices: 26813138--26813373 Score: 181
Period size: 47 Copynumber: 5.1 Consensus size: 47
26813128 ATAAGAACAT
* *
26813138 TTTATTATTAAGAAATTTATGAAATTATATATCATTATTAAATTATA
1 TTTAATATTAAGAAATTTATGAAATTATATATAATTATTAAATTATA
** * *
26813185 TTTAATATTAA-TTATTT-T-AAATTGTATA-AATTCATATAAGA--AAA
1 TTTAATATTAAGAAATTTATGAAATTATATATAATT-AT-TAA-ATTATA
* * * *
26813229 TTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TTTAATATTAAGAAATTTATGAAATTATATATAATTATTAAATTATA
** *
26813276 TTTAATATTAA-TTATTT-T-AAATTATATA-AATTCATATAAGA--AAA
1 TTTAATATTAAGAAATTTATGAAATTATATATAATT-AT-TAA-ATTATA
* * * *
26813320 TTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TTTAATATTAAGAAATTTATGAAATTATATATAATTATTAAATTATA
26813367 TTTAATA
1 TTTAATA
26813374 ATAATTATTT
Statistics
Matches: 142, Mismatches: 29, Indels: 36
0.69 0.14 0.17
Matches are distributed among these distances:
43 6 0.04
44 45 0.32
45 16 0.11
46 17 0.12
47 52 0.37
48 6 0.04
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.48
Consensus pattern (47 bp):
TTTAATATTAAGAAATTTATGAAATTATATATAATTATTAAATTATA
Found at i:26813248 original size:91 final size:91
Alignment explanation
Indices: 26813119--26813409 Score: 510
Period size: 91 Copynumber: 3.2 Consensus size: 91
26813109 ATGATTTTAG
* * *
26813119 TAAATTCATATAAGAACATTTTATTATTAAGAAATTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
*
26813184 ATTTAATATTAATTATTTTAAATTGTA
65 ATTTAATATTAATTATTTTAAATTATA
26813211 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
26813276 TTTAATATTAATTATTTTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
*
26813302 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
*
26813367 TTTAATAATAATTATTTTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
*
26813393 CAAATTCATATAAGAAA
1 TAAATTCATATAAGAAA
26813410 CTTATTAGTT
Statistics
Matches: 192, Mismatches: 7, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
91 176 0.92
92 16 0.08
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TTTAATATTAATTATTTTAAATTATA
Found at i:26813556 original size:120 final size:120
Alignment explanation
Indices: 26813432--26813849 Score: 712
Period size: 120 Copynumber: 3.5 Consensus size: 120
26813422 AATTATTTTA
* *
26813432 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTT
*
26813496 TATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
65 TATAGTATCATATATTATGATTTCAGTAAATTCATATAAGAATATTGATTATTAAG
*
26813552 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
* * * *
26813617 ATAGTAGCATATATTATGATTTCAGTAAATTCATATAATAAAATTAATTATTAAG
66 ATAGTATCATATATTATGATTTCAGTAAATTCATATAAGAATATTGATTATTAAG
*
26813672 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
*
26813737 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTCAGTAAATTCATATAAGAATATTGATTATTAAG
*
26813792 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
26813850 ATGATTAAAT
Statistics
Matches: 281, Mismatches: 15, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
120 273 0.97
121 8 0.03
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
ATAGTATCATATATTATGATTTCAGTAAATTCATATAAGAATATTGATTATTAAG
Found at i:26813581 original size:18 final size:17
Alignment explanation
Indices: 26813553--26813587 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26813543 ATTATTAAGA
*
26813553 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26813570 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26813588 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26813707 original size:16 final size:16
Alignment explanation
Indices: 26813686--26813732 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
26813676 TTATTAAATT
26813686 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
26813702 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
26813717 AT-TATGTTAAATTATA
1 ATATAT-TTTAATTATA
26813733 TTTTATAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.42
16 13 0.50
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:26813827 original size:16 final size:16
Alignment explanation
Indices: 26813806--26813847 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
26813796 TTATTAAATT
*
26813806 ATATATTTTAATTATA
1 ATATATTTTAATAATA
26813822 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
26813837 AT-TATGTTTAA
1 ATATAT-TTTAA
26813848 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:26813832 original size:15 final size:15
Alignment explanation
Indices: 26813797--26813838 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
26813787 TTAAGAATTT
*
26813797 TATTAAATTAT-ATA
1 TATTTAATTATAATA
26813811 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
26813825 TATTTAATAATAAT
1 TATTTAATTATAAT
26813839 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:26814073 original size:45 final size:44
Alignment explanation
Indices: 26813993--26814083 Score: 130
Period size: 45 Copynumber: 2.0 Consensus size: 44
26813983 ACCTCTATTC
*
26813993 CATTCAACCAAACACAAGAATACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGAATACTATTACGCCTCTATTCCAATA
* *
26814037 CATTCAACCAAACA-ATAGATTTGCTATTACGCCTCTATTCCAATA
1 CATTCAACCAAACACA-AGA-ATACTATTACGCCTCTATTCCAATA
26814082 CA
1 CA
26814084 GCGAACTAAC
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
43 1 0.02
44 17 0.40
45 24 0.57
ACGTcount: A:0.37, C:0.29, G:0.05, T:0.29
Consensus pattern (44 bp):
CATTCAACCAAACACAAGAATACTATTACGCCTCTATTCCAATA
Found at i:26815511 original size:63 final size:63
Alignment explanation
Indices: 26815392--26815512 Score: 165
Period size: 63 Copynumber: 1.9 Consensus size: 63
26815382 GCACTTCTTC
* ** *
26815392 CATGTCCTGCTTGTTGAATGCATTTGAAAGGGAGTGCACTTGGTCCTGTCTCTATAATGTTGT
1 CATGTCCTGCTTGTTGAATGCATTTGAAAGGGAGTGCACTTGGTACTGAATATATAATGTTGT
*
26815455 CATGTCCTGCTTGTTGAATGCATTTGAAAGGGAGTG-AC-TGGTTAGTGAAATATATAAT
1 CATGTCCTGCTTGTTGAATGCATTTGAAAGGGAGTGCACTTGG-TACTG-AATATATAAT
26815513 TTCAACCTCT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
61 3 0.06
62 5 0.10
63 43 0.84
ACGTcount: A:0.24, C:0.14, G:0.26, T:0.36
Consensus pattern (63 bp):
CATGTCCTGCTTGTTGAATGCATTTGAAAGGGAGTGCACTTGGTACTGAATATATAATGTTGT
Found at i:26821132 original size:120 final size:120
Alignment explanation
Indices: 26820935--26821797 Score: 1663
Period size: 120 Copynumber: 7.2 Consensus size: 120
26820925 TTTTCAAGTT
26820935 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
26821000 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
26821055 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
26821120 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
26821175 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
26821240 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
*
26821295 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
26821360 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
*
26821415 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
26821480 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
*
26821535 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
26821600 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
26821655 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
26821720 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
26821775 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
26821798 TAAATATGAT
Statistics
Matches: 736, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 736 1.00
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (120 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
Found at i:26821294 original size:18 final size:17
Alignment explanation
Indices: 26821266--26821300 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26821256 ATTATTAAGA
*
26821266 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26821283 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26821301 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26821654 original size:18 final size:17
Alignment explanation
Indices: 26821626--26821660 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26821616 ATTATTAAGA
*
26821626 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26821643 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26821661 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26821774 original size:18 final size:17
Alignment explanation
Indices: 26821746--26821780 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26821736 ATTATTAAGA
*
26821746 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26821763 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26821781 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26821971 original size:39 final size:40
Alignment explanation
Indices: 26821922--26822030 Score: 121
Period size: 44 Copynumber: 2.6 Consensus size: 40
26821912 AGTTTTTTCC
26821922 ATTATGCTATTACACCTCTATTCCATTCAACCAAACACAAG
1 ATTA-GCTATTACACCTCTATTCCATTCAACCAAACACAAG
* **
26821963 ATTA-CTATTACGCCTCTATTCCATTACATTCAACCAAACAGTAG
1 ATTAGCTATTACACCTCTATT-C----CATTCAACCAAACACAAG
*
26822007 ATTAGCTATTACACCTCTAATCCA
1 ATTAGCTATTACACCTCTATTCCA
26822031 ATACACCTCT
Statistics
Matches: 57, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
39 15 0.26
40 3 0.05
41 4 0.07
44 21 0.37
45 14 0.25
ACGTcount: A:0.35, C:0.28, G:0.06, T:0.31
Consensus pattern (40 bp):
ATTAGCTATTACACCTCTATTCCATTCAACCAAACACAAG
Found at i:26822009 original size:44 final size:45
Alignment explanation
Indices: 26821945--26822035 Score: 130
Period size: 45 Copynumber: 2.0 Consensus size: 45
26821935 ACCTCTATTC
* * *
26821945 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
**
26821989 CATTCAACCAAACAGTAGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
26822034 CA
1 CA
26822036 CCTCTAATCC
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 20 0.49
45 21 0.51
ACGTcount: A:0.38, C:0.29, G:0.05, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:26822037 original size:16 final size:16
Alignment explanation
Indices: 26822016--26822084 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
26822006 GATTAGCTAT
26822016 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
26822032 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
*
26822049 TACACCTCTAATGCAA
1 TACACCTCTAATCCAA
26822065 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
26822081 TACA
1 TACA
26822085 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.38, C:0.36, G:0.01, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:26822058 original size:33 final size:32
Alignment explanation
Indices: 26822016--26822084 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
26822006 GATTAGCTAT
26822016 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
26822049 TACACCTCTAATGCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
26822081 TACA
1 TACA
26822085 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.38, C:0.36, G:0.01, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:26822337 original size:50 final size:49
Alignment explanation
Indices: 26822261--26822382 Score: 145
Period size: 50 Copynumber: 2.4 Consensus size: 49
26822251 GTTATTAGTT
* * * * *
26822261 TATTTTGTACTAGTATTAATTAGATTCTATTTTATAGTTGCTCGAACATA
1 TATTTTGTATTAGT-TTGATTTGATTCTATTTTATAGTTACTCAAACATA
* *
26822311 TATTTTGGTATTAGTTTGATTTGATTCTATTTTATAGTTATTCAAATATA
1 TATTTT-GTATTAGTTTGATTTGATTCTATTTTATAGTTACTCAAACATA
*
26822361 TATTTTAGTATTAATTTGATTT
1 TATTTT-GTATTAGTTTGATTT
26822383 TATTTAATAT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
50 55 0.89
51 7 0.11
ACGTcount: A:0.29, C:0.06, G:0.11, T:0.54
Consensus pattern (49 bp):
TATTTTGTATTAGTTTGATTTGATTCTATTTTATAGTTACTCAAACATA
Found at i:26822410 original size:45 final size:46
Alignment explanation
Indices: 26822271--26822410 Score: 122
Period size: 50 Copynumber: 3.0 Consensus size: 46
26822261 TATTTTGTAC
* * *
26822271 TAGTATTAATTAGATTCTATTTTATA-GTTGCTCGAACATATATTT
1 TAGTATTAATTTGATTTTATTTAATATGTTGCTCGAACATATATTT
* * * * ** * *
26822316 TGGTATTAGTTTGATTTGATTCTATTTTATAGTTATTCAAATATATATTT
1 TAGTATTAATTTGATTTTATT-TA--ATAT-GTTGCTCGAACATATATTT
*
26822366 TAGTATTAATTTGATTTTATTTAATATG-TGCTCGAACATGTATTT
1 TAGTATTAATTTGATTTTATTTAATATGTTGCTCGAACATATATTT
26822411 ATAATCTTAC
Statistics
Matches: 70, Mismatches: 20, Indels: 10
0.70 0.20 0.10
Matches are distributed among these distances:
45 28 0.40
46 2 0.03
47 3 0.04
48 2 0.03
49 2 0.03
50 33 0.47
ACGTcount: A:0.29, C:0.06, G:0.12, T:0.52
Consensus pattern (46 bp):
TAGTATTAATTTGATTTTATTTAATATGTTGCTCGAACATATATTT
Found at i:26823527 original size:30 final size:30
Alignment explanation
Indices: 26823471--26823530 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
26823461 GGGATGTGTC
*
26823471 AGCAAATCGCGTCCTCGTAGGAGCGATTTG
1 AGCAAATCGCGTCCACGTAGGAGCGATTTG
26823501 AGCAAATCGCG-CCGACGT-GGATGCGATTTG
1 AGCAAATCGCGTCC-ACGTAGGA-GCGATTTG
26823531 CTGACACGTC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 5 0.19
30 22 0.81
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.22
Consensus pattern (30 bp):
AGCAAATCGCGTCCACGTAGGAGCGATTTG
Found at i:26831879 original size:52 final size:52
Alignment explanation
Indices: 26831801--26831906 Score: 185
Period size: 52 Copynumber: 2.0 Consensus size: 52
26831791 GCATTCATTA
* *
26831801 TGCCTTCGAATATATAGGAAGAAAATTGATATGGAAATAACACTTAAAAGTT
1 TGCCTTCGAATATATAAGAAGAAAATTGAAATGGAAATAACACTTAAAAGTT
*
26831853 TGCCTTCGAATATATAAGAAGAAAATTGAAATGGAAATAACACTTACAAGTT
1 TGCCTTCGAATATATAAGAAGAAAATTGAAATGGAAATAACACTTAAAAGTT
26831905 TG
1 TG
26831907 TTTTTATAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.44, C:0.10, G:0.17, T:0.28
Consensus pattern (52 bp):
TGCCTTCGAATATATAAGAAGAAAATTGAAATGGAAATAACACTTAAAAGTT
Found at i:26837810 original size:20 final size:20
Alignment explanation
Indices: 26837760--26837811 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
26837750 TTGGAACATG
* *
26837760 AATATCGATACCTTAGGAAA
1 AATATCGATACTTTAAGAAA
* * *
26837780 TATGTCAATACTTTAAGAAA
1 AATATCGATACTTTAAGAAA
26837800 AATATCGATACT
1 AATATCGATACT
26837812 GGATCGATAC
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.44, C:0.13, G:0.12, T:0.31
Consensus pattern (20 bp):
AATATCGATACTTTAAGAAA
Found at i:26838137 original size:17 final size:17
Alignment explanation
Indices: 26838117--26838151 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
26838107 AATAACAGAG
* *
26838117 GTAATGTAATAGGTAAA
1 GTAATGCAATAGATAAA
26838134 GTAATGCAATAGATAAA
1 GTAATGCAATAGATAAA
26838151 G
1 G
26838152 AATTACCTGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.49, C:0.03, G:0.23, T:0.26
Consensus pattern (17 bp):
GTAATGCAATAGATAAA
Found at i:26842974 original size:61 final size:56
Alignment explanation
Indices: 26842907--26843043 Score: 150
Period size: 58 Copynumber: 2.3 Consensus size: 56
26842897 TTTTTATAAT
* * *
26842907 ATTATATATTATGATTTTTTAATTCATATTTTAATAATTATTATATTAAGAATGTTATTAA
1 ATTATATATTAT-ATTTTTAAATT-ATA-TTTAATAATAATTATATTAAAAATG--ATTAA
*
26842968 ATTATATATTAT-TTTATTAAATTATATTTAATAATAATTATGTTAAAAATGATTAA
1 ATTATATATTATATTT-TTAAATTATATTTAATAATAATTATATTAAAAATGATTAA
* *
26843024 ATTATTTATTTTTATTTTTA
1 ATTATATA-TTATATTTTTA
26843044 TTAAAATATA
Statistics
Matches: 67, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
56 12 0.18
57 6 0.09
58 25 0.37
59 6 0.09
60 6 0.09
61 12 0.18
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.55
Consensus pattern (56 bp):
ATTATATATTATATTTTTAAATTATATTTAATAATAATTATATTAAAAATGATTAA
Found at i:26842982 original size:58 final size:56
Alignment explanation
Indices: 26842907--26843059 Score: 155
Period size: 60 Copynumber: 2.6 Consensus size: 56
26842897 TTTTTATAAT
* * *
26842907 ATTATATATTATGATTT-TTTAATTCATATTTTAATAATTATTATATTAAGAATGTTATTAA
1 ATTATATATTAT--TTTATTAAATT-ATA-TTTAATAATAATTATATTAAAAATG--ATTAA
*
26842968 ATTATATATTATTTTATTAAATTATATTTAATAATAATTATGTTAAAAATGATTAA
1 ATTATATATTATTTTATTAAATTATATTTAATAATAATTATATTAAAAATGATTAA
* *
26843024 ATTATTTATTTTTATTTTTATTAAAATATATTTAAT
1 ATTA--TA-TATTA-TTTTATTAAATTATATTTAAT
26843060 TTGTAATCTT
Statistics
Matches: 81, Mismatches: 6, Indels: 11
0.83 0.06 0.11
Matches are distributed among these distances:
56 9 0.11
58 24 0.30
59 10 0.12
60 26 0.32
61 12 0.15
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (56 bp):
ATTATATATTATTTTATTAAATTATATTTAATAATAATTATATTAAAAATGATTAA
Found at i:26843272 original size:16 final size:16
Alignment explanation
Indices: 26843253--26843298 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
26843243 CGATTACAGT
* * *
26843253 TCTATTCTATTATAGC
1 TCTATTCAATTACAAC
*
26843269 TCTATTCCATTACAAC
1 TCTATTCAATTACAAC
26843285 TCTATTCAATTACA
1 TCTATTCAATTACA
26843299 GTGAACCAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.30, C:0.24, G:0.02, T:0.43
Consensus pattern (16 bp):
TCTATTCAATTACAAC
Found at i:26846631 original size:16 final size:16
Alignment explanation
Indices: 26846609--26846677 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
26846599 TTTGGTTCGC
26846609 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
26846625 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
26846641 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
26846658 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
26846674 TGTA
1 TGTA
26846678 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:26846655 original size:33 final size:32
Alignment explanation
Indices: 26846609--26846677 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
26846599 TTTGGTTCGC
26846609 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
*
26846641 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGCGTATTGGATTAGAGG
26846674 TGTA
1 TGTA
26846678 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.17
33 29 0.83
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTAGAGG
Found at i:26846742 original size:44 final size:45
Alignment explanation
Indices: 26846658--26846748 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
26846648 GGATTAGAGG
* * *
26846658 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
26846703 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
26846747 TG
1 TG
26846749 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:26846934 original size:18 final size:17
Alignment explanation
Indices: 26846913--26846947 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26846903 TTATTATTAA
*
26846913 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
26846931 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
26846948 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:26846975 original size:51 final size:51
Alignment explanation
Indices: 26846920--26847096 Score: 138
Period size: 51 Copynumber: 3.1 Consensus size: 51
26846910 TAAATATATT
26846920 TTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATA
1 TTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATA
* * * *
26846971 TTAATTTACTGAAATCATAATATATGATACTATAAAATATAAATTAACATAATTATTATTAAATA
1 TTAA-TTA---AAAT-AT-ATA-AT-TTA--ATAAAAT-T--CTT-A-ATAATTAATATT--CT-
*
26847036 TATT
48 TATA
*
26847040 TTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAATATTCTTATA
1 TTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATA
26847091 TTAATT
1 TTAATT
26847097 TACTGAAATC
Statistics
Matches: 97, Mismatches: 11, Indels: 36
0.67 0.08 0.25
Matches are distributed among these distances:
51 13 0.13
52 4 0.04
54 11 0.11
55 5 0.05
56 4 0.04
57 3 0.03
58 3 0.03
59 9 0.09
61 9 0.09
62 3 0.03
63 3 0.03
64 4 0.04
65 4 0.04
66 11 0.11
68 4 0.04
69 7 0.07
ACGTcount: A:0.48, C:0.05, G:0.01, T:0.46
Consensus pattern (51 bp):
TTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATA
Found at i:26847109 original size:120 final size:120
Alignment explanation
Indices: 26846896--26847757 Score: 1663
Period size: 120 Copynumber: 7.2 Consensus size: 120
26846886 ATCATATTTA
*
26846896 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
*
26846961 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
26847016 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
26847081 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
* *
26847136 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
26847201 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
26847256 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
26847321 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
* *
26847376 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
26847441 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGT-AAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
26847495 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
26847560 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
26847615 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
26847680 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
26847735 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
26847758 AACTTGAAAA
Statistics
Matches: 731, Mismatches: 10, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
119 117 0.16
120 614 0.84
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:26847451 original size:37 final size:37
Alignment explanation
Indices: 26847410--26847584 Score: 97
Period size: 38 Copynumber: 4.5 Consensus size: 37
26847400 TTAATTAAAA
26847410 TATATAATTTAATGAAATTCTTAATAATTAATATTCT
1 TATATAATTTAATGAAATTCTTAATAATTAATATTCT
* * * * *
26847447 TATATTAATTTACTGAAA-TCATAAT-ATATGATACTGT
1 TATA-TAATTTAATGAAATTCTTAATAAT-TAATATTCT
* * * **
26847484 AAATATAAATTAACAT-AATTATTATTAAATATATTTTAATTAAAC-
1 -TATAT-AATTTA-ATGAA--ATTCTT-AATA-A--TTAA-TATTCT
*
26847529 TATATAATTTAATAAAATTCTTAATAATTAATATTCT
1 TATATAATTTAATGAAATTCTTAATAATTAATATTCT
*
26847566 TATATTAATTTACTGAAAT
1 TATA-TAATTTAATGAAAT
26847585 CATAATATAT
Statistics
Matches: 100, Mismatches: 21, Indels: 33
0.65 0.14 0.21
Matches are distributed among these distances:
36 5 0.05
37 25 0.25
38 34 0.34
39 2 0.02
40 5 0.05
41 7 0.07
42 5 0.05
43 7 0.07
44 5 0.05
45 2 0.02
46 3 0.03
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.46
Consensus pattern (37 bp):
TATATAATTTAATGAAATTCTTAATAATTAATATTCT
Found at i:26851056 original size:8 final size:9
Alignment explanation
Indices: 26851036--26851070 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
26851026 ATATTGCAAC
26851036 AAAAATTTA
1 AAAAATTTA
26851045 AAAAATTTA
1 AAAAATTTA
26851054 AAAAATTT-
1 AAAAATTTA
26851062 AAAAATTTA
1 AAAAATTTA
26851071 GAAGAGTGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 8 0.32
9 17 0.68
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (9 bp):
AAAAATTTA
Found at i:26851059 original size:18 final size:17
Alignment explanation
Indices: 26851036--26851070 Score: 61
Period size: 17 Copynumber: 2.0 Consensus size: 17
26851026 ATATTGCAAC
26851036 AAAAATTTAAAAAATTTA
1 AAAAATTT-AAAAATTTA
26851054 AAAAATTTAAAAATTTA
1 AAAAATTTAAAAATTTA
26851071 GAAGAGTGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AAAAATTTAAAAATTTA
Found at i:26856264 original size:41 final size:43
Alignment explanation
Indices: 26856145--26856277 Score: 139
Period size: 45 Copynumber: 3.0 Consensus size: 43
26856135 AGGATTTTCG
* *
26856145 ATATGTGTTCTCGTGTAAGACCAC-GTCTGGAACGATGGCATCGAT
1 ATATGTGAT-TCGTGTAAGACC-CTGTCTGGGAC-ATGGCATCGAT
* *
26856190 ATATGTGATTACGTGTAAGACCATGTCTAGGACATTGGCATCG-T
1 ATATGTGATT-CGTGTAAGACCCTGTCTGGGACA-TGGCATCGAT
*
26856234 AT-T-TGATTCGTGTAAGACCCTGTCCGGGACAGTGGCATCGAT
1 ATATGTGATTCGTGTAAGACCCTGTCTGGGACA-TGGCATCGAT
26856276 AT
1 AT
26856278 GAGATAGCAT
Statistics
Matches: 76, Mismatches: 8, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
41 28 0.37
42 8 0.11
43 1 0.01
44 5 0.07
45 34 0.45
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (43 bp):
ATATGTGATTCGTGTAAGACCCTGTCTGGGACATGGCATCGAT
Found at i:26858389 original size:35 final size:35
Alignment explanation
Indices: 26858343--26858413 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
26858333 GAATAGAAGA
26858343 TAAGATGAATGGCAAAGCATACACATGTTTTGTAC
1 TAAGATGAATGGCAAAGCATACACATGTTTTGTAC
*
26858378 TAAGATGAATGGGAAAGCATACACATGTTTTGTAC
1 TAAGATGAATGGCAAAGCATACACATGTTTTGTAC
26858413 T
1 T
26858414 TAAATGGGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.30
Consensus pattern (35 bp):
TAAGATGAATGGCAAAGCATACACATGTTTTGTAC
Found at i:26858423 original size:31 final size:32
Alignment explanation
Indices: 26858350--26858423 Score: 96
Period size: 35 Copynumber: 2.2 Consensus size: 32
26858340 AGATAAGATG
* *
26858350 AATGGCAAAGCATACACATGTTTTGTACTAAGATG
1 AATGGGAAAGCATACACATGTTTTGTACT---ATA
26858385 AATGGGAAAGCATACACATGTTTTGTACT-TA
1 AATGGGAAAGCATACACATGTTTTGTACTATA
26858416 AATGGGAA
1 AATGGGAA
26858424 GTTAGGCATG
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
31 9 0.24
35 28 0.76
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.28
Consensus pattern (32 bp):
AATGGGAAAGCATACACATGTTTTGTACTATA
Found at i:26859313 original size:44 final size:44
Alignment explanation
Indices: 26859250--26859426 Score: 282
Period size: 44 Copynumber: 4.0 Consensus size: 44
26859240 AGGAAAGTAA
*
26859250 GATTCGCAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAG
1 GATTCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAG
*
26859294 GATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAG
1 GATTCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAG
* * *
26859338 GATTCACAATCTTCAGCCTATTCCACTGCTGACCGGGGAGATAG
1 GATTCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAG
* * *
26859382 GATTCACAATCTTCAGCCTATTCCACTACTATCCAGGGAGATAG
1 GATTCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAG
26859426 G
1 G
26859427 GTTGGGGTTA
Statistics
Matches: 125, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 125 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (44 bp):
GATTCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAG
Found at i:26859586 original size:88 final size:88
Alignment explanation
Indices: 26859440--26860097 Score: 768
Period size: 88 Copynumber: 7.5 Consensus size: 88
26859430 GGGGTTATCG
* * * *
26859440 ATCTGCTTCACTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTTCGCTGCAACCCA
1 ATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCGCTGCCACCCA
* * *
26859505 AGGAGGCAAGGCTGGTGTCTTCG
66 GGGAGGCAAGGCTAGTGTCTTCA
* * * * * *
26859528 ATCTGCTTCGCTATC-GATGCAGGAAGGCAAGATTTGCTATTTTTAACCTGCTCCGCTGCAACCC
1 ATCTGCTTCACTGTCAG-TACAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCGCTGCCACCC
26859592 AGGGAGGCAAGGCTAGTGTCTTCA
65 AGGGAGGCAAGGCTAGTGTCTTCA
*
26859616 ATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCGCTGCCACCGA
1 ATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCGCTGCCACCCA
26859681 GGGAGGCAAGGCTAGTGTCTTCA
66 GGGAGGCAAGGCTAGTGTCTTCA
* * *
26859704 ATCTGCTTCACTGTTAGTACAGGAAGGCAAGATCTGCTATCTTTAACCTACTCCGCTGCCACCGA
1 ATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCGCTGCCACCCA
*
26859769 GAGAGGCAAGGCTAGTGTCTTCA
66 GGGAGGCAAGGCTAGTGTCTTCA
* * * *
26859792 ATCTGCTTTACTGTCAGTACAGGAAGGCAAGATTTGCTATCTTTAATCTGCTCCGCTGCCACCGA
1 ATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCGCTGCCACCCA
26859857 GGGAGGCAAGGCTAGTGTCTTCA
66 GGGAGGCAAGGCTAGTGTCTTCA
* * * *
26859880 ATCTGCTTCACTGTCAGTACA-GAACGGCATGATCTGCTATCTTTAACCTGCTCCACTACCACCG
1 ATCTGCTTCACTGTCAGTACAGGAA-GGCAAGATCTGCTATCTTTAACCTGCTCCGCTGCCACCC
** * *
26859944 AGGGAAACAAGGCTAATGTCTTCG
65 AGGGAGGCAAGGCTAGTGTCTTCA
* * * * * * * ** * * * *
26859968 ATTTACTCCACT-ACTGCT-TAGGGAGATAAGATCTGCAAT-TTTCAACCTACTCTGCTGCAACC
1 ATCTGCTTCACTGTCAG-TACAGGAAGGCAAGATCTGCTATCTTT-AACCTGCTCCGCTGCCACC
* **
26860030 CAGGGAGGCAAGGCTGGTGTCTTTG
64 CAGGGAGGCAAGGCTAGTGTCTTCA
* * * ** * *
26860055 ATCTGCTTCGCTATCGGTGTAGGAAGGTAAGATCTGTTATCTT
1 ATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGCTATCTT
26860098 CACTGATTTG
Statistics
Matches: 496, Mismatches: 65, Indels: 17
0.86 0.11 0.03
Matches are distributed among these distances:
86 3 0.01
87 60 0.12
88 430 0.87
89 3 0.01
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (88 bp):
ATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCGCTGCCACCCA
GGGAGGCAAGGCTAGTGTCTTCA
Found at i:26859842 original size:45 final size:45
Alignment explanation
Indices: 26859440--26859936 Score: 173
Period size: 44 Copynumber: 11.3 Consensus size: 45
26859430 GGGGTTATCG
* * * *
26859440 ATCTGCTTCACTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTTA
1 ATCTGCTTCACTGTCAGTACAGGAAGGCAAGATTTGCTATCTTCA
* * *** ** * * *
26859485 ACCTGCTTCGCTG-CAACCCAAGG-AGGCAAG-GCTGGTGTCTTCG
1 ATCTGCTTCACTGTCAGTAC-AGGAAGGCAAGATTTGCTATCTTCA
* * * * *
26859528 ATCTGCTTCGCTATC-GATGCAGGAAGGCAAGATTTGCTATTTTTA
1 ATCTGCTTCACTGTCAG-TACAGGAAGGCAAGATTTGCTATCTTCA
* * * *** * ** * *
26859573 ACCTGCTCCGCTG-CAACCCAGGGAGGCAAGGCTAG-TGTCTTCA
1 ATCTGCTTCACTGTCAGTACAGGAAGGCAAGATTTGCTATCTTCA
* *
26859616 ATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTA
1 ATCTGCTTCACTGTCAGTACAGGAAGGCAAGATTTGCTATCTTCA
* * * * * * ** * *
26859661 ACCTGCTCCGCTGCCA--CCGAGGGAGGCAAGGCTAG-TGTCTTCA
1 ATCTGCTTCACTGTCAGTAC-AGGAAGGCAAGATTTGCTATCTTCA
* * *
26859704 ATCTGCTTCACTGTTAGTACAGGAAGGCAAGATCTGCTATCTTTA
1 ATCTGCTTCACTGTCAGTACAGGAAGGCAAGATTTGCTATCTTCA
* * * * * * ** * *
26859749 ACCTACTCCGCTG-C--CACCGAGAGAGGCAAGGCTAG-TGTCTTCA
1 ATCTGCTTCACTGTCAGTACAG-GA-AGGCAAGATTTGCTATCTTCA
* *
26859792 ATCTGCTTTACTGTCAGTACAGGAAGGCAAGATTTGCTATCTTTA
1 ATCTGCTTCACTGTCAGTACAGGAAGGCAAGATTTGCTATCTTCA
* * * * * ** * *
26859837 ATCTGCTCCGCTGCCA--CCGAGGGAGGCAAGGCTAG-TGTCTTCA
1 ATCTGCTTCACTGTCAGTAC-AGGAAGGCAAGATTTGCTATCTTCA
* * *
26859880 ATCTGCTTCACTGTCAGTACA-GAACGGCATGATCTGCTATCTTTA
1 ATCTGCTTCACTGTCAGTACAGGAA-GGCAAGATTTGCTATCTTCA
* *
26859925 ACCTGCTCCACT
1 ATCTGCTTCACT
26859937 ACCACCGAGG
Statistics
Matches: 305, Mismatches: 124, Indels: 46
0.64 0.26 0.10
Matches are distributed among these distances:
42 3 0.01
43 92 0.30
44 106 0.35
45 101 0.33
46 3 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (45 bp):
ATCTGCTTCACTGTCAGTACAGGAAGGCAAGATTTGCTATCTTCA
Found at i:26862243 original size:26 final size:25
Alignment explanation
Indices: 26862208--26862275 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 25
26862198 GAAGAAAATC
**
26862208 CAAAA-GAATGAAAGAATAATTATTT
1 CAAAATGAATGAAAGAAT-ATTAGCT
*
26862233 CAAAATGAATGAAAAAATATTAGCT
1 CAAAATGAATGAAAGAATATTAGCT
26862258 CAAAAATGAATGCAAAGA
1 C-AAAATGAATG-AAAGA
26862276 TGTATTTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
25 11 0.31
26 21 0.58
27 4 0.11
ACGTcount: A:0.57, C:0.07, G:0.13, T:0.22
Consensus pattern (25 bp):
CAAAATGAATGAAAGAATATTAGCT
Found at i:26884781 original size:3 final size:3
Alignment explanation
Indices: 26884767--26884828 Score: 54
Period size: 3 Copynumber: 21.0 Consensus size: 3
26884757 CTTGAGCTTC
* * * * * *
26884767 ATT ATT ACT ATT ATT ATT GTT AAT ATT ATT ATT ATT ACT ACT ACT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
26884815 ATT A-T ATT TTT ATT
1 ATT ATT ATT ATT ATT
26884829 GATCTAACCT
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
2 2 0.04
3 46 0.96
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:26884814 original size:15 final size:15
Alignment explanation
Indices: 26884767--26884828 Score: 72
Period size: 15 Copynumber: 4.2 Consensus size: 15
26884757 CTTGAGCTTC
26884767 ATTATTACTATTATT
1 ATTATTACTATTATT
* *
26884782 ATTGTTAATATTATT
1 ATTATTACTATTATT
* *
26884797 ATTATTACTACTACT
1 ATTATTACTATTATT
*
26884812 ATTATTA-TATTTTT
1 ATTATTACTATTATT
26884826 ATT
1 ATT
26884829 GATCTAACCT
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
14 7 0.18
15 31 0.82
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (15 bp):
ATTATTACTATTATT
Found at i:26887457 original size:24 final size:24
Alignment explanation
Indices: 26887399--26887457 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 24
26887389 GATAATTAAT
26887399 TTAATCTTTTATATTTTATTTATTA
1 TTAAT-TTTTATATTTTATTTATTA
* *
26887424 TTAGTGTTTATTATTTTA-TTATTA
1 TTAATTTTTA-TATTTTATTTATTA
26887448 TTAATTTTTA
1 TTAATTTTTA
26887458 ATTAATCTCC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 18 0.62
25 11 0.38
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.68
Consensus pattern (24 bp):
TTAATTTTTATATTTTATTTATTA
Found at i:26889093 original size:31 final size:31
Alignment explanation
Indices: 26889058--26889120 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
26889048 AAATGGTGAC
26889058 ACGTATTCTTTTTAATTTTAATGAACATTTT
1 ACGTATTCTTTTTAATTTTAATGAACATTTT
26889089 ACGTATTCTTTTTAATTTTAATGAACATTTT
1 ACGTATTCTTTTTAATTTTAATGAACATTTT
26889120 A
1 A
26889121 TATTTTATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.30, C:0.10, G:0.06, T:0.54
Consensus pattern (31 bp):
ACGTATTCTTTTTAATTTTAATGAACATTTT
Found at i:26895949 original size:24 final size:24
Alignment explanation
Indices: 26895872--26895949 Score: 66
Period size: 24 Copynumber: 3.1 Consensus size: 24
26895862 ATGTTACAAT
* * *
26895872 ATTCGGCCCAGCATTAAACTGAAT
1 ATTCGGCCCATCATTAAATTGAAC
* * **
26895896 ATTCGACCCATGAGAAGAATGTTGAAC
1 ATTCGGCCCATCATTA-AA--TTGAAC
26895923 ATTCGGCCCATCATTAAATTGAAC
1 ATTCGGCCCATCATTAAATTGAAC
26895947 ATT
1 ATT
26895950 TGGTCCATGG
Statistics
Matches: 40, Mismatches: 11, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
24 20 0.50
25 2 0.05
26 2 0.05
27 16 0.40
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.27
Consensus pattern (24 bp):
ATTCGGCCCATCATTAAATTGAAC
Found at i:26902898 original size:79 final size:79
Alignment explanation
Indices: 26902765--26902918 Score: 182
Period size: 79 Copynumber: 1.9 Consensus size: 79
26902755 CACAGGCACA
* * * * ****
26902765 GTTATAAATTAGAATCAATAACAATCAGTCTAACCTATTCAGATATTGTGTATTCCTCATCAACA
1 GTTATAAATCAGAATCAATAACAATCAATCTAACATAATCAGATATCACATATTCCTCATCAACA
26902830 AAGTAACGTAAAGG
66 AAGTAACGTAAAGG
* * * * *
26902844 GTTATAAATCAGAATCAGTAACAATCAATCTAACATAATCAGATGTCACATATTCTTCATTAATA
1 GTTATAAATCAGAATCAATAACAATCAATCTAACATAATCAGATATCACATATTCCTCATCAACA
*
26902909 GAGTAACGTA
66 AAGTAACGTA
26902919 GAGGCGTACC
Statistics
Matches: 61, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
79 61 1.00
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.31
Consensus pattern (79 bp):
GTTATAAATCAGAATCAATAACAATCAATCTAACATAATCAGATATCACATATTCCTCATCAACA
AAGTAACGTAAAGG
Found at i:26908645 original size:16 final size:16
Alignment explanation
Indices: 26908624--26908655 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26908614 GTTTTGTTGC
*
26908624 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
26908640 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
26908656 CTTTTAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:26919943 original size:488 final size:490
Alignment explanation
Indices: 26919024--26920003 Score: 1937
Period size: 488 Copynumber: 2.0 Consensus size: 490
26919014 ATCCGACATG
26919024 CCTTAGGATGTTTCAAATTCCTCGTACAAAAGAAGGAGGCGGTAGTTTCTCAATAACTTTTATTT
1 CCTTAGGATGTTTCAAATTCCTCGTACAAAAGAAGGAGGCGGTAGTTTCTCAATAACTTTTATTT
26919089 CCAAATTTCCCTAGCATTTGGAAAAAAATATCCCTATAAACCGAGAAACCATCCATGAAGACATC
66 CCAAATTTCCCTAGCATTTGG-AAAAAATATCCCTATAAACCGAGAAACCATCCATGAAGACATC
26919154 CAAACCCTCTTCAATCATATTTGAAAAGGTAGAAGTCATACATCACATAAAAGTGGCAGGAGCAT
130 CAAACCCTCTTCAATCATATTTGAAAAGGTAGAAGTCATACATCACATAAAAGTGGCAGGAGCAT
26919219 TACATAGCCAAAGAGGCATCCTACATAAAGCATAAGTACCAAAAGGACAAGTGAAGGTGGTCTTC
195 TACATAGCCAAAGAGGCATCCTACATAAAGCATAAGTACCAAAAGGACAAGTGAAGGTGGTCTTC
26919284 TTTTGATCATCCAGATGGATCAAAATCTAATGATACTTAGAATACCCATCAAGGAAGCAGTAAAA
260 TTTTGATCATCCAGATGGATCAAAATCTAATGATACTTAGAATACCCATCAAGGAAGCAGTAAAA
26919349 TTATTTATGTTGGCTATAGTCCACCCAATGGATTTCTTATGAGCCTTTAACACTTGAAGAAAAGC
325 TTATTTATGTTGGCTATAGTCCACCCAATGGATTTCTTATGAGCCTTTAACACTTGAAGAAAAGC
26919414 CAATTCTCTTGCCAAAGTTAAGCATGCCGAGATGATAACTGACAATAAATTGTTCTTTCCTAAAT
390 CAATTCTCTTGCCAAAGTTAAGCATGCCGAGATGATAACTGACAATAAATTGTTCTTTCCTAAAT
26919479 ATCCGTATTTCAATCCCTTGCGAAAGGATTTCTATT
455 ATCCGTATTTCAATCCCTTGCGAAAGGATTTCTATT
26919515 CCTTAGGATGTTTCAAATTCCTCGTACAAAAGAAGGAGGCGGTAGTTTCTCAATAACTTTTATTT
1 CCTTAGGATGTTTCAAATTCCTCGTACAAAAGAAGGAGGCGGTAGTTTCTCAATAACTTTTATTT
26919580 CCAAATTTCCCTAGCATTTGG-AAAAATATCCCTATAAACCGAGAAACCATCCATGAAGACATCC
66 CCAAATTTCCCTAGCATTTGGAAAAAATATCCCTATAAACCGAGAAACCATCCATGAAGACATCC
26919644 AAACCCTCTTCAATCATATTTG-AAAGGTAGAAGTCATACATCACATAAAAGTGGCAGGAGCATT
131 AAACCCTCTTCAATCATATTTGAAAAGGTAGAAGTCATACATCACATAAAAGTGGCAGGAGCATT
26919708 ACATAGCCAAAGAGGCATCCTACATAAAGCATAAGTACCAAAAGGACAAGTGAAGGTGGTCTTCT
196 ACATAGCCAAAGAGGCATCCTACATAAAGCATAAGTACCAAAAGGACAAGTGAAGGTGGTCTTCT
26919773 TTTGATCATCCAGATGGATCAAAATCTAATGATACTTAGAATACCCATCAAGGAAGCAGTAAAAT
261 TTTGATCATCCAGATGGATCAAAATCTAATGATACTTAGAATACCCATCAAGGAAGCAGTAAAAT
26919838 TATTTATGTTGGCTATAGTCCACCCAATGGATTTCTTATGAGCCTTTAACACTTGAAGAAAAGCC
326 TATTTATGTTGGCTATAGTCCACCCAATGGATTTCTTATGAGCCTTTAACACTTGAAGAAAAGCC
26919903 AATTCTCTTGCCAAAGTTAAGCATGCCGAGATGATAACTGACAATAAATTGTTCTTTCCTAAATA
391 AATTCTCTTGCCAAAGTTAAGCATGCCGAGATGATAACTGACAATAAATTGTTCTTTCCTAAATA
26919968 TCCGTATTTCAATCCCTTGCGAAAGGATTTCTATT
456 TCCGTATTTCAATCCCTTGCGAAAGGATTTCTATT
26920003 C
1 C
26920004 TAACTCTGGC
Statistics
Matches: 489, Mismatches: 0, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
488 338 0.69
489 65 0.13
491 86 0.18
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.28
Consensus pattern (490 bp):
CCTTAGGATGTTTCAAATTCCTCGTACAAAAGAAGGAGGCGGTAGTTTCTCAATAACTTTTATTT
CCAAATTTCCCTAGCATTTGGAAAAAATATCCCTATAAACCGAGAAACCATCCATGAAGACATCC
AAACCCTCTTCAATCATATTTGAAAAGGTAGAAGTCATACATCACATAAAAGTGGCAGGAGCATT
ACATAGCCAAAGAGGCATCCTACATAAAGCATAAGTACCAAAAGGACAAGTGAAGGTGGTCTTCT
TTTGATCATCCAGATGGATCAAAATCTAATGATACTTAGAATACCCATCAAGGAAGCAGTAAAAT
TATTTATGTTGGCTATAGTCCACCCAATGGATTTCTTATGAGCCTTTAACACTTGAAGAAAAGCC
AATTCTCTTGCCAAAGTTAAGCATGCCGAGATGATAACTGACAATAAATTGTTCTTTCCTAAATA
TCCGTATTTCAATCCCTTGCGAAAGGATTTCTATT
Found at i:26922799 original size:21 final size:21
Alignment explanation
Indices: 26922775--26922826 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
26922765 CGTGCAATAT
26922775 GCCCATGTGTGGCACAAACCA
1 GCCCATGTGTGGCACAAACCA
26922796 GCCCATGTGTGGCACAAACCA
1 GCCCATGTGTGGCACAAACCA
* *
26922817 ACCCGTGTGT
1 GCCCATGTGT
26922827 TCCTAAAAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.25, C:0.33, G:0.25, T:0.17
Consensus pattern (21 bp):
GCCCATGTGTGGCACAAACCA
Found at i:26923661 original size:20 final size:20
Alignment explanation
Indices: 26923611--26923677 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 20
26923601 ATCGACTGTT
* *
26923611 ATTTCCATTACAAATAACCA
1 ATTTCCATTTCATATAACCA
* *
26923631 ATTTCCGTTTCATCTAACCA
1 ATTTCCATTTCATATAACCA
* *
26923651 TTTTCCATTTCATATATCCA
1 ATTTCCATTTCATATAACCA
*
26923671 GTTTCCA
1 ATTTCCA
26923678 CCCGATGAAC
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.30, C:0.27, G:0.03, T:0.40
Consensus pattern (20 bp):
ATTTCCATTTCATATAACCA
Found at i:26931492 original size:27 final size:27
Alignment explanation
Indices: 26931462--26931516 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
26931452 AATATAATAT
*
26931462 AATTA-TAAAATAATTAAATTTTACTTA
1 AATTATTAAAAT-ATTAAATTTTAATTA
*
26931489 AATTATTAACATATTAAATTTTAATTA
1 AATTATTAAAATATTAAATTTTAATTA
26931516 A
1 A
26931517 TTTTATAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 20 0.80
28 5 0.20
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (27 bp):
AATTATTAAAATATTAAATTTTAATTA
Found at i:26946263 original size:147 final size:147
Alignment explanation
Indices: 26945991--26946293 Score: 552
Period size: 147 Copynumber: 2.1 Consensus size: 147
26945981 TATTGAAACC
*
26945991 GGTACCCCATGCAGTCTCACTATCTCAGACACATACAATTTAGCCAGCTTCTGCAGAGAGTAGTT
1 GGTAACCCATGCAGTCTCACTATCTCAGACACATACAATTTAGCCAGCTTCTGCAGAGAGTAGTT
* *
26946056 AGTACGAACCGCTATGAAGTGGGTGGATTTGATCAATCGATCCACGATGACCCATACAGAATCCT
66 AGTACGAACCGCTACGAAGTAGGTGGATTTGATCAATCGATCCACGATGACCCATACAGAATCCT
*
26946121 TCTTGTTAGGTGTGAGG
131 TCTTGGTAGGTGTGAGG
26946138 GGTAACCCATGCAGTCTCACTATCTCAGACACATACAATTTAGCCAGCTTCTGCAGAGAGTAGTT
1 GGTAACCCATGCAGTCTCACTATCTCAGACACATACAATTTAGCCAGCTTCTGCAGAGAGTAGTT
* *
26946203 AGTACGAACCGGTACGAAGTAGGTGGATTTGGTCAATCGATCCACGATGACCCATACAGAATCCT
66 AGTACGAACCGCTACGAAGTAGGTGGATTTGATCAATCGATCCACGATGACCCATACAGAATCCT
26946268 TCTTGGTAGGTGTGAGG
131 TCTTGGTAGGTGTGAGG
26946285 GGTAACCCA
1 GGTAACCCA
26946294 CCAACGAAGT
Statistics
Matches: 150, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
147 150 1.00
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (147 bp):
GGTAACCCATGCAGTCTCACTATCTCAGACACATACAATTTAGCCAGCTTCTGCAGAGAGTAGTT
AGTACGAACCGCTACGAAGTAGGTGGATTTGATCAATCGATCCACGATGACCCATACAGAATCCT
TCTTGGTAGGTGTGAGG
Found at i:26961849 original size:94 final size:93
Alignment explanation
Indices: 26961674--26961930 Score: 268
Period size: 94 Copynumber: 2.7 Consensus size: 93
26961664 AAATGAGGTT
* * ** * *
26961674 TAATGTGTAAGACTATGGTTTGGCTATGATAGCATATAGAGCCCATCGGGACAATAAACATGAGG
1 TAATGTGTAAGACCATGG-TTCGCTATGGCAGCATATAGAGTCCATCGGGACAATAAACACGAGG
*
26961739 TTGTCCTCCAGAACATTAAACATAGGGAA
65 TAGTCCTCCAGAACATTAAACATAGGGAA
* * ** *
26961768 TAATGTGTAAGACCATGGTTCAGCTATGGCAACATATGGAGTCCATCGGGACAATAAGTACGGGG
1 TAATGTGTAAGACCATGGTTC-GCTATGGCAGCATATAGAGTCCATCGGGACAATAAACACGAGG
* * *
26961833 TAGT-CTACCTGGACATTAAACATGGGGAA
65 TAGTCCT-CCAGAACATTAAACATAGGGAA
* * * *
26961862 TAATATGTAAGACCAT-GTCTCGACTATGGCAGCATATAGAGTCC-TCTGGGATACTAAACACGG
1 TAATGTGTAAGACCATGGT-TCG-CTATGGCAGCATATAGAGTCCATC-GGGACAATAAACACGA
26961925 GGTAGT
63 GGTAGT
26961931 TCGCCAGGAC
Statistics
Matches: 136, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
93 9 0.07
94 127 0.93
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (93 bp):
TAATGTGTAAGACCATGGTTCGCTATGGCAGCATATAGAGTCCATCGGGACAATAAACACGAGGT
AGTCCTCCAGAACATTAAACATAGGGAA
Found at i:26964003 original size:15 final size:17
Alignment explanation
Indices: 26963968--26964005 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
26963958 TGTATAACAT
26963968 AATTATGAAATGTCTTG
1 AATTATGAAATGTCTTG
26963985 -ATTAT-AAATG-CTTG
1 AATTATGAAATGTCTTG
26963999 AATTATG
1 AATTATG
26964006 GTGTAATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 5
0.79 0.00 0.21
Matches are distributed among these distances:
14 4 0.21
15 10 0.53
16 5 0.26
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (17 bp):
AATTATGAAATGTCTTG
Found at i:26965586 original size:137 final size:139
Alignment explanation
Indices: 26965411--26965664 Score: 379
Period size: 137 Copynumber: 1.8 Consensus size: 139
26965401 TGAGGCTCGA
* * *
26965411 GTTCGATTTCTCTCTTACTCACATTTGTAATTTTTATTTCATGTTGCTTCAAGCTTTTTAAA-TT
1 GTTCGATTTCTCTCATACTCACATTTATAATTTTTATTTCATGTTGCTTCAAGCTTTTAAAATTT
* * *** *
26965475 TTAATTAAT-TTTTTTAACATGTTAGTTTTTTGGTTGGATGGTTAGATAGTTGCAACTTCATCTT
66 TTAATTAATGTTGTTTAACATGTTAGTTCTTTCACTAGATGGTTAGATAGTTGCAACTTCATCTT
26965539 TGAGTTCGT
131 TGAGTTCGT
*
26965548 GTTCGA-TTCTTCTCATACTCATATTTATAATTTTTATTTCATGTTGCTTCAAGCTTTTAAAATT
1 GTTCGATTTC-TCTCATACTCACATTTATAATTTTTATTTCATGTTGCTTCAAGCTTTTAAAATT
*
26965612 TTTAATTAATGTTGTTTAACATTTTAGTTCTTTCACTAGATGGTTAGATAGTT
65 TTTAATTAATGTTGTTTAACATGTTAGTTCTTTCACTAGATGGTTAGATAGTT
26965665 AGATAGATGT
Statistics
Matches: 103, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
136 3 0.03
137 54 0.52
138 11 0.11
139 35 0.34
ACGTcount: A:0.23, C:0.12, G:0.13, T:0.52
Consensus pattern (139 bp):
GTTCGATTTCTCTCATACTCACATTTATAATTTTTATTTCATGTTGCTTCAAGCTTTTAAAATTT
TTAATTAATGTTGTTTAACATGTTAGTTCTTTCACTAGATGGTTAGATAGTTGCAACTTCATCTT
TGAGTTCGT
Found at i:26966060 original size:16 final size:16
Alignment explanation
Indices: 26966039--26966096 Score: 53
Period size: 16 Copynumber: 3.2 Consensus size: 16
26966029 TAATGTGGTT
26966039 ATAAAAATAATTAAAA
1 ATAAAAATAATTAAAA
26966055 ATAAAAAAATACATTAGTTAAAA
1 AT--AAAAAT--A--A-TTAAAA
26966078 ATAAAAATAATTAAAA
1 ATAAAAATAATTAAAA
26966094 ATA
1 ATA
26966097 TCATCAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 14
0.71 0.00 0.29
Matches are distributed among these distances:
16 11 0.31
17 1 0.03
18 6 0.17
19 1 0.03
20 1 0.03
21 6 0.17
22 1 0.03
23 8 0.23
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.26
Consensus pattern (16 bp):
ATAAAAATAATTAAAA
Found at i:26966343 original size:136 final size:136
Alignment explanation
Indices: 26966182--26966572 Score: 398
Period size: 143 Copynumber: 2.8 Consensus size: 136
26966172 ACAACCTCAT
* * * * * * *
26966182 ACTCAAGGATGTAATCACGATTATCTGACCACCTAAAGAAATGAGCTAATATGTTAAAAATATTA
1 ACTCAAGGATGTAATTACAACTATCTAACCATCTAACGAAA-GAACTAATATGTTAAAAATATTA
* * *
26966247 ATT-AAAAAAAACTTGAAGCAACATGAAATAAAAAAAATATAAATCTAAGT-AGTACAGGAATCA
65 ATTAAAAAAAAACTTGAAGCAACATGAAATAAAAAAAATACAAATATAAGTAAG-ACAAGAATCA
* *
26966310 AACTCGAG
129 AACTCAAA
26966318 AC-CTAAGGATGTAATTACAACTATCTAACCATCTAACGAAAGAACTAATATGTTAAAAAATATT
1 ACTC-AAGGATGTAATTACAACTATCTAACCATCTAACGAAAGAACTAATATGTT--AAAA-A-T
* * *
26966382 AATTAAAATTTTAAAAAAAAACTTGAAGTAACATGAAAT--AAAAAATACAAATATGAGTAAGAG
61 -ATT--AA--TTAAAAAAAAACTTGAAGCAACATGAAATAAAAAAAATACAAATATAAGTAAGAC
26966445 AAGAATCAAACTCAAA
121 AAGAATCAAACTCAAA
* * * * *
26966461 ACTCAAAGATATAGTTGCAACTATCTAACCATCTAACCAAAGAACTAATATGTTAAAAA-ATTAA
1 ACTCAAGGATGTAATTACAACTATCTAACCATCTAACGAAAGAACTAATATGTTAAAAATATTAA
*
26966525 TTAAAAATTTTAAAAACTTGAAGCAGCATGAAATAAAAAAAATACAAA
66 TT-AAAA----AAAAACTTGAAGCAACATGAAATAAAAAAAATACAAA
26966573 CGTGAGTAGG
Statistics
Matches: 213, Mismatches: 22, Indels: 36
0.79 0.08 0.13
Matches are distributed among these distances:
133 2 0.01
134 4 0.02
135 15 0.07
136 33 0.15
137 7 0.03
138 22 0.10
139 1 0.00
140 16 0.08
141 4 0.02
142 2 0.01
143 77 0.36
144 5 0.02
145 25 0.12
ACGTcount: A:0.53, C:0.13, G:0.10, T:0.24
Consensus pattern (136 bp):
ACTCAAGGATGTAATTACAACTATCTAACCATCTAACGAAAGAACTAATATGTTAAAAATATTAA
TTAAAAAAAAACTTGAAGCAACATGAAATAAAAAAAATACAAATATAAGTAAGACAAGAATCAAA
CTCAAA
Found at i:26966482 original size:143 final size:142
Alignment explanation
Indices: 26966248--26966591 Score: 423
Period size: 143 Copynumber: 2.4 Consensus size: 142
26966238 AAAATATTAA
* * * *
26966248 TTAAAAAAAACTTGAAGCAACATGAAATAAAAAAAATATAAATCTAAGT-AGTACAGGAATCAAA
1 TTAAAAAAAACTTGAAGCAACATGAAAT-AAAAAAATACAAATATGAGTAAG-AGAGGAATCAAA
* * * * *
26966312 CTCGAGACCTAAGGATGTAATTACAACTATCTAACCATCTAACGAAAGAACTAATATGTTAAAAA
64 CTCAAAACCTAAAGATATAATTACAACTATCTAACCATCTAACCAAAGAACTAATATGTT-AAAA
26966377 ATATTAATT-AAAATT
128 A-ATTAATTAAAAATT
* *
26966392 TTAAAAAAAAACTTGAAGTAACATGAAAT-AAAAAATACAAATATGAGTAAGAGAAGAATCAAAC
1 TT-AAAAAAAACTTGAAGCAACATGAAATAAAAAAATACAAATATGAGTAAGAGAGGAATCAAAC
* *
26966456 TCAAAA-CTCAAAGATATAGTTGCAACTATCTAACCATCTAACCAAAGAACTAATATGTTAAAAA
65 TCAAAACCT-AAAGATATAATTACAACTATCTAACCATCTAACCAAAGAACTAATATGTTAAAAA
26966520 ATTAATTAAAAATT
129 ATTAATTAAAAATT
* ** *
26966534 TT---AAAAACTTGAAGCAGCATGAAATAAAAAAAATACAAACGTGAGTAGGAGAGGAATC
1 TTAAAAAAAACTTGAAGCAACATGAAAT-AAAAAAATACAAATATGAGTAAGAGAGGAATC
26966592 GAATGTGGGA
Statistics
Matches: 175, Mismatches: 19, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
138 21 0.12
140 27 0.15
141 7 0.04
142 15 0.09
143 76 0.43
144 4 0.02
145 25 0.14
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.23
Consensus pattern (142 bp):
TTAAAAAAAACTTGAAGCAACATGAAATAAAAAAATACAAATATGAGTAAGAGAGGAATCAAACT
CAAAACCTAAAGATATAATTACAACTATCTAACCATCTAACCAAAGAACTAATATGTTAAAAAAT
TAATTAAAAATT
Found at i:26968367 original size:29 final size:31
Alignment explanation
Indices: 26968333--26968391 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 31
26968323 CAATTAGAGT
* *
26968333 TTCATGTGTATAATT-C-CATCAAATTAAAA
1 TTCATGTATACAATTACACATCAAATTAAAA
*
26968362 TTCATGTATACAATTACACATTAAATTAAA
1 TTCATGTATACAATTACACATCAAATTAAA
26968392 GTTCGTATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 13 0.52
30 1 0.04
31 11 0.44
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.37
Consensus pattern (31 bp):
TTCATGTATACAATTACACATCAAATTAAAA
Found at i:26973005 original size:19 final size:18
Alignment explanation
Indices: 26972977--26973017 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
26972967 ATTTAAGAGG
*
26972977 GAATTGAGAGAGATTTGA
1 GAATTGAGAGAGAATTGA
26972995 GAATGTGAGAGAGAATTGA
1 GAAT-TGAGAGAGAATTGA
26973014 -AATT
1 GAATT
26973018 TAATTGGAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 1 0.05
18 7 0.33
19 13 0.62
ACGTcount: A:0.41, C:0.00, G:0.32, T:0.27
Consensus pattern (18 bp):
GAATTGAGAGAGAATTGA
Found at i:26980541 original size:21 final size:21
Alignment explanation
Indices: 26980515--26980555 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26980505 ATCTGCTCAA
* *
26980515 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
26980536 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
26980556 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:26983405 original size:36 final size:36
Alignment explanation
Indices: 26983332--26983413 Score: 103
Period size: 36 Copynumber: 2.2 Consensus size: 36
26983322 TGGTGGTTGT
* **
26983332 CATTATTGATTGTCTCCCATTAATGTTAATGGCAAC
1 CATTATTAATTGTCTCCCATTAATGTTAATCACAAC
*
26983368 CATTATTAATTGTCTTCCATTAATGTTAA-CACAAAC
1 CATTATTAATTGTCTCCCATTAATGTTAATCAC-AAC
26983404 CATTACTTAA
1 CATTA-TTAA
26983414 ATGCAGGGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
35 1 0.03
36 35 0.88
37 4 0.10
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.39
Consensus pattern (36 bp):
CATTATTAATTGTCTCCCATTAATGTTAATCACAAC
Found at i:26983764 original size:15 final size:15
Alignment explanation
Indices: 26983744--26983774 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
26983734 GCAGCATCTG
26983744 AAAATTCACCAAACT
1 AAAATTCACCAAACT
26983759 AAAATTCACCAAACT
1 AAAATTCACCAAACT
26983774 A
1 A
26983775 CCTATCTCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
AAAATTCACCAAACT
Found at i:26984714 original size:8 final size:8
Alignment explanation
Indices: 26984701--26984728 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
26984691 AGTGAGTGTA
26984701 TGTATATG
1 TGTATATG
26984709 TGTATATG
1 TGTATATG
26984717 TGTATATG
1 TGTATATG
26984725 TGTA
1 TGTA
26984729 AGTGCATGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (8 bp):
TGTATATG
Found at i:26992871 original size:13 final size:13
Alignment explanation
Indices: 26992855--26992905 Score: 84
Period size: 13 Copynumber: 3.9 Consensus size: 13
26992845 TTTAAACCAA
26992855 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
26992868 ACTTTTCCACAGC
1 ACTTTTCAAAAGC
26992881 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
26992894 ACTTTTCAAAAG
1 ACTTTTCAAAAG
26992906 TAATGAAGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.35, C:0.25, G:0.08, T:0.31
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Done.