Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 93 of 228
Found at i:26992873 original size:26 final size:26
Alignment explanation
Indices: 26992844--26992899 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
26992834 AACACTCAAA
26992844 TTTTAAACCA-AACTTTTCAAAAGCAC
1 TTTTAAA-CAGAACTTTTCAAAAGCAC
** *
26992870 TTTTCCACAGCACTTTTCAAAAGCAC
1 TTTTAAACAGAACTTTTCAAAAGCAC
26992896 TTTT
1 TTTT
26992900 CAAAAGTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.34, C:0.25, G:0.05, T:0.36
Consensus pattern (26 bp):
TTTTAAACAGAACTTTTCAAAAGCAC
Found at i:26994516 original size:42 final size:42
Alignment explanation
Indices: 26994447--26994548 Score: 150
Period size: 42 Copynumber: 2.4 Consensus size: 42
26994437 ATAGTGAGAT
* * *
26994447 ACACAGCTTGGACACACGCCCATGTCCTTACCCGTGTGGCTC
1 ACACGGCTTGGACACACGACCAGGTCCTTACCCGTGTGGCTC
*
26994489 ACACGGCTTGGACACACGACCAGGTCCTTGCCCGTGTGGCTC
1 ACACGGCTTGGACACACGACCAGGTCCTTACCCGTGTGGCTC
* *
26994531 ACACGGCCTGGGCACACG
1 ACACGGCTTGGACACACG
26994549 CCTATGTCTT
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 54 1.00
ACGTcount: A:0.19, C:0.37, G:0.26, T:0.18
Consensus pattern (42 bp):
ACACGGCTTGGACACACGACCAGGTCCTTACCCGTGTGGCTC
Found at i:26994607 original size:146 final size:146
Alignment explanation
Indices: 26994342--26994673 Score: 398
Period size: 146 Copynumber: 2.3 Consensus size: 146
26994332 ATTTATATGC
* * * ** *
26994342 CACACGGCTTGGACACA-GGCCTATGTCCTTTCTCGTACGGCTCACACGGCCTGGGCACATGCCC
1 CACACGGCTTGGACACACGACC-ATGTCCTTGCCCGTGTGGCTCACACGGCCTGGGCACACGCCC
** * * * * * *
26994406 ATGTCCCTGTTCGTGTGGTTCTAAATCATAAATAGTGAGATACACAGCTTGGACACACGCCCATG
65 ATGTCCCTGGCCATGTGGTTCTAAAGCATAAACAGTGAGATACACAGCCTAGACACACACCCATG
*
26994471 TCCTTACCCGTGTGGCT
130 TCCTTACCCATGTGGCT
* *
26994488 CACACGGCTTGGACACACGACCAGGTCCTTGCCCGTGTGGCTCACACGGCCTGGGCACACGCCTA
1 CACACGGCTTGGACACACGACCATGTCCTTGCCCGTGTGGCTCACACGGCCTGGGCACACGCCCA
** * * *
26994553 TGTCTTTGGCCATGTGGTTCTAAAGCGTAAACAGTGAGTTACACGGCCTAGACACACACCCATGT
66 TGTCCCTGGCCATGTGGTTCTAAAGCATAAACAGTGAGATACACAGCCTAGACACACACCCATGT
*
26994618 CCTTGCCCATGTGGCT
131 CCTTACCCATGTGGCT
* * *
26994634 CACATGGCCTGGACACAC-ACTCATGTCCTTGGCCGTGTGG
1 CACACGGCTTGGACACACGAC-CATGTCCTTGCCCGTGTGG
26994674 TGTCAACAGT
Statistics
Matches: 157, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
145 2 0.01
146 152 0.97
147 3 0.02
ACGTcount: A:0.20, C:0.32, G:0.25, T:0.23
Consensus pattern (146 bp):
CACACGGCTTGGACACACGACCATGTCCTTGCCCGTGTGGCTCACACGGCCTGGGCACACGCCCA
TGTCCCTGGCCATGTGGTTCTAAAGCATAAACAGTGAGATACACAGCCTAGACACACACCCATGT
CCTTACCCATGTGGCT
Found at i:27017394 original size:4 final size:4
Alignment explanation
Indices: 27017385--27017409 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
27017375 GTCCATCAAT
27017385 TGTA TGTA TGTA TGTA TGTA TGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA T
27017410 TTAATTGAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TGTA
Found at i:27017440 original size:44 final size:40
Alignment explanation
Indices: 27017396--27017475 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
27017386 GTATGTATGT
27017396 ATGTATGTATGTATTTAATTGAGTTGATGCTATAAATTAA
1 ATGTATGTATGTATTTAATTGAGTTGATGCTATAAATTAA
27017436 ATGTATGTATGTATTTAATTGAGTTGATGCTATAAATTAA
1 ATGTATGTATGTATTTAATTGAGTTGATGCTATAAATTAA
27017476 CTCGACATGG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.35, C:0.03, G:0.17, T:0.45
Consensus pattern (40 bp):
ATGTATGTATGTATTTAATTGAGTTGATGCTATAAATTAA
Found at i:27019284 original size:29 final size:30
Alignment explanation
Indices: 27019252--27019310 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
27019242 TTATATCTAT
* * *
27019252 AAATACGTATATATCTATTT-TATTTTTAA
1 AAATACCTAAATACCTATTTATATTTTTAA
*
27019281 AAATGCCTAAATACCTATTTATATTTTTAA
1 AAATACCTAAATACCTATTTATATTTTTAA
27019311 CACATATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 16 0.64
30 9 0.36
ACGTcount: A:0.39, C:0.10, G:0.03, T:0.47
Consensus pattern (30 bp):
AAATACCTAAATACCTATTTATATTTTTAA
Found at i:27019712 original size:16 final size:16
Alignment explanation
Indices: 27019691--27019721 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
27019681 CTTTTTACTC
27019691 AATTTTAAAAATAGAA
1 AATTTTAAAAATAGAA
*
27019707 AATTTTCAAAATAGA
1 AATTTTAAAAATAGA
27019722 GATAATACTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.32
Consensus pattern (16 bp):
AATTTTAAAAATAGAA
Found at i:27025083 original size:44 final size:44
Alignment explanation
Indices: 27024947--27025085 Score: 104
Period size: 44 Copynumber: 3.2 Consensus size: 44
27024937 AGACACCAGC
* * * *
27024947 CTTGCCTCCTTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTCCATAGATTGCAGCGGAGCAGGATAAAAATAGCAGAT
* ** * ** * * *
27024991 CTTGCCTTCCA-ACACCGACAGCGAAGCA-GATCGAAGTCACCAG-C
1 CTTGCC-TCCATAGATTG-CAGCGGAGCAGGATAAAAAT-AGCAGAT
*
27025035 CTTGCCTCCATAGATTGCAGCGGAGCAGGCTAAAAATAGCAGAT
1 CTTGCCTCCATAGATTGCAGCGGAGCAGGATAAAAATAGCAGAT
27025079 CTTGCCT
1 CTTGCCT
27025086 TCCTGCATCG
Statistics
Matches: 66, Mismatches: 23, Indels: 12
0.65 0.23 0.12
Matches are distributed among these distances:
43 17 0.26
44 33 0.50
45 16 0.24
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.21
Consensus pattern (44 bp):
CTTGCCTCCATAGATTGCAGCGGAGCAGGATAAAAATAGCAGAT
Found at i:27025301 original size:88 final size:88
Alignment explanation
Indices: 27024924--27025285 Score: 521
Period size: 88 Copynumber: 4.1 Consensus size: 88
27024914 GTACTGGTTG
* * *
27024924 CGAAGCAGATCAAAGACACCAGCCTTGCCTCCTTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAG
1 CGAAGCAGATCGAAGACACCAGCCTTGCCTCCATGGGTTGCAGCGGAGCAGGCTAAAAATAGCAG
** *
27024989 ATCTTGCCTTCCAACACCGACAG
66 ATCTTGCCTTCCTGCACCGACAA
* * *
27025012 CGAAGCAGATCGAAGTCACCAGCCTTGCCTCCATAGATTGCAGCGGAGCAGGCTAAAAATAGCAG
1 CGAAGCAGATCGAAGACACCAGCCTTGCCTCCATGGGTTGCAGCGGAGCAGGCTAAAAATAGCAG
*
27025077 ATCTTGCCTTCCTGCATCGACAA
66 ATCTTGCCTTCCTGCACCGACAA
* * *
27025100 TGAAACAGATTGAAGACACCAGCCTTGCCTCTC-TGGGTTGCAGCGGAGCAGGCTAAAAATAGCA
1 CGAAGCAGATCGAAGACACCAGCCTTGCCTC-CATGGGTTGCAGCGGAGCAGGCTAAAAATAGCA
* *
27025164 AATCTTGCCTTCTTGCACCGACAA
65 GATCTTGCCTTCCTGCACCGACAA
* * * *
27025188 CGAAGCAGATCGAAGTCACCAGCCTTGCCT-CACTGGGTTGCAACAGAGCAGGCTATAAATAGCA
1 CGAAGCAGATCGAAGACACCAGCCTTGCCTCCA-TGGGTTGCAGCGGAGCAGGCTAAAAATAGCA
27025252 GATCTTGCCTTCCTGCACCGACAA
65 GATCTTGCCTTCCTGCACCGACAA
27025276 CGAAGCAGAT
1 CGAAGCAGAT
27025286 TGATAACCCC
Statistics
Matches: 243, Mismatches: 28, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
86 1 0.00
88 241 0.99
89 1 0.00
ACGTcount: A:0.30, C:0.28, G:0.23, T:0.19
Consensus pattern (88 bp):
CGAAGCAGATCGAAGACACCAGCCTTGCCTCCATGGGTTGCAGCGGAGCAGGCTAAAAATAGCAG
ATCTTGCCTTCCTGCACCGACAA
Found at i:27025410 original size:44 final size:44
Alignment explanation
Indices: 27025301--27026350 Score: 1018
Period size: 44 Copynumber: 24.7 Consensus size: 44
27025291 ACCCCAGCCT
** **
27025301 TATCTCCCTGGTCAGCAGTGGAATAGACTAAAGATTAAAGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATT-GTGAATCC
* *
27025346 TATCTCCTTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
*
27025390 TATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * * *
27025434 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGAGAATTC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* *
27025478 TATCTCCCTAGG-CAGCAGTGGAATAGATTAAAGA----G--CCC
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* *
27025516 TATCTCCCTGGTCAGCGGTGGAATAAGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * * *
27025560 TATCTCCCTAGTCAGCAGTGGAATAGG-CAGAAGATTGAGAATTC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTA-AAGATTGTGAATCC
* *
27025604 TATCTACCTGAG-CAGCAGTGGAATAGATT-AA-A----GAATCC
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* *
27025642 TATCTCCCTGGACAGCAGTAGAATAGGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * *
27025686 TATCTCCCTGGGCAGCAGTGGAATAGATTAAAGA----G--CCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* *
27025724 TATCTCCCTGGTCAGCGGTGGAATAAGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * * *
27025768 TATCTCCCTAGTCAGCAGTGGAATAGG-CAGAAGATTGAGAATTC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTA-AAGATTGTGAATCC
* * *
27025812 TATCTACCTGGGCAGCAGTGGAATAGATTAAAGA---T---TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
** * *
27025850 TATCTCCCTGAACAACAGTAGAATAGGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * * * * *
27025894 TACCTCCCTGGTTAGTAGTGGAATAGGTTGAAGATTGAGAATTC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * * *
27025938 TATCTCCCTGGGCAGCAGTGGAATAGATT-AA-A-T-AG-CT-C
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
*
27025976 TATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* *
27026020 TATCTCCCTGGACAGCATTGGAATAGGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
** * * *
27026064 TATCTCCCTGGTCAGCAGTGGAATAGCCTGAAGATTGAGAATTC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * * *
27026108 TATCTCCTTGGGCAGCAGTAGAATAGATT-AA-A----GAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* *
27026146 TATCTCTCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * *
27026190 TATCTCCCTGGTCAGCAGTGAAATAGGTTGAAGATTGAGAA-CTC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATC-C
* * * * *
27026234 TATCTCTCTGGGT-AGCAGTGGAATAGATTGAAGATTGT-AGGTCT
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTAAAGATTGTGA-ATCC
* * * * *
27026278 TATTTCCTTGGTCAGCAGTGGAATAGGTTGAAGATCGTGAACCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
*
27026322 TATCTCCCTGAG-CAGCAGTGGAGTAGGTT
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTT
27026351 GAAAATAGCA
Statistics
Matches: 827, Mismatches: 127, Indels: 103
0.78 0.12 0.10
Matches are distributed among these distances:
37 3 0.00
38 176 0.21
39 7 0.01
40 7 0.01
41 3 0.00
42 6 0.01
43 14 0.02
44 569 0.69
45 42 0.05
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (44 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
Found at i:27025550 original size:126 final size:127
Alignment explanation
Indices: 27025301--27026353 Score: 1028
Period size: 126 Copynumber: 8.3 Consensus size: 127
27025291 ACCCCAGCCT
* * * * *
27025301 TATCTCCCTGGTCAGCAGTGGAATAGACTAAAGATTAAAGAATCCTATCTCCTTGGACAGCAGTG
1 TATCTCCCTGGTCAGCAGTGGAATAGATTGAAGATT-GAGAATTCTATCTCCCTGG-CAGCAGTG
* *
27025366 GAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTGTGAA
64 GAATAGATTAAAGA---TG-ATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAA
27025431 TCC
125 TCC
* *
27025434 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGAGAATTCTATCTCCCTAGGCAGCAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGATTGAAGATTGAGAATTCTATCTCCCT-GGCAGCAGTGG
* * *
27025499 AATAGATTAAAGA-G-CCCTATCTCCCTGGTCAGCGGTGGAATAAGTTAAAGATTGTGAATCC
65 AATAGATTAAAGATGATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* *** *
27025560 TATCTCCCTAGTCAGCAGTGGAATAGGCAGAAGATTGAGAATTCTATCTACCTGAGCAGCAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGATTGAAGATTGAGAATTCTATCTCCCTG-GCAGCAGTGG
* *
27025625 AATAGATTAAAGA--ATCCTATCTCCCTGGACAGCAGTAGAATAGGTTAAAGATTGTGAATCC
65 AATAGATTAAAGATGATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* ** *
27025686 TATCTCCCTGGGCAGCAGTGGAATAGATT-AA-A--GAG--CCCTATCTCCCTGGTCAGCGGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGATTGAAGATTGAGAATTCTATCTCCCTGG-CAGCAGTGG
* * *
27025745 AATA-AGTTAAAGATTGTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGG-CAGAAGATTGAGA
65 AATAGA-TTAAAGA---TG-ATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTA-AAGATTGTGA
*
27025808 ATTC
124 ATCC
* * * * *
27025812 TATCTACCTGGGCAGCAGTGGAATAGATT--A-A---AG-ATTCCTATCTCCCTGAACAACAGTA
1 TATCTCCCTGGTCAGCAGTGGAATAGATTGAAGATTGAGAATT-CTATCTCCCTG-GCAGCAGTG
* * * * * *
27025870 GAATAGGTTAAAGATTGTGAATCCTACCTCCCTGGTTAGTAGTGGAATAGGTTGAAGATTGAGAA
64 GAATAGATTAAAGA---TG-ATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAA
*
27025935 TTC
125 TCC
* * *
27025938 TATCTCCCTGGGCAGCAGTGGAATAGATT-AA-A-T-AG--CTCTATCTCCCTGGTCAGTAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGATTGAAGATTGAGAATTCTATCTCCCTGG-CAGCAGTGG
* * *
27025997 AATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCATTGGAATAGGTTAAAGATTGTGAAT
65 AATAGATTAAAGA---TG-ATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
27026062 CC
126 CC
** * *
27026064 TATCTCCCTGGTCAGCAGTGGAATAGCCTGAAGATTGAGAATTCTATCTCCTTGGGCAGCAGTAG
1 TATCTCCCTGGTCAGCAGTGGAATAGATTGAAGATTGAGAATTCTATCTCCCT-GGCAGCAGTGG
* *
27026129 AATAGATTAAAGA--ATCCTATCTCTCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCC
65 AATAGATTAAAGATGATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * * * *
27026190 TATCTCCCTGGTCAGCAGTGAAATAGGTTGAAGATTGAGAACTCTATCTCTCTGGGTAGCAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGATTGAAGATTGAGAATTCTATCTCCCT-GGCAGCAGTGG
* * * * * * *
27026255 AATAGATTGAAGATTGTAGGTCTTATTTCCTTGGTCAGCAGTGGAATAGGTTGAAGATCGTGAAC
65 AATAGATTAAAGA-TG-A--TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
27026320 CC
126 CC
* *
27026322 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAA
1 TATCTCCCTG-GTCAGCAGTGGAATAGATTGAA
27026354 AATAGCAGAT
Statistics
Matches: 792, Mismatches: 94, Indels: 69
0.83 0.10 0.07
Matches are distributed among these distances:
119 2 0.00
120 29 0.04
122 3 0.00
124 3 0.00
125 6 0.01
126 568 0.72
127 5 0.01
128 4 0.01
129 1 0.00
130 3 0.00
132 131 0.17
133 37 0.05
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (127 bp):
TATCTCCCTGGTCAGCAGTGGAATAGATTGAAGATTGAGAATTCTATCTCCCTGGCAGCAGTGGA
ATAGATTAAAGATGATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
Found at i:27025563 original size:82 final size:82
Alignment explanation
Indices: 27025430--27026343 Score: 535
Period size: 82 Copynumber: 10.8 Consensus size: 82
27025420 AAGATTGTGA
* * *
27025430 ATCCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGAGAATTCTATCTCCCTAGG-CAGC
1 ATCCTATCTCCCTGGTCAGCAGTGGAATA-GTTAAAGATTGAGAATCCTATCTCCCT-GGTCAGC
27025494 AGTGGAATAGATTAAAGAG
64 AGTGGAATAGATTAAAGAG
* * * *
27025513 -CCCTATCTCCCTGGTCAGCGGTGGAATAAGTTAAAGATTGTGAATCCTATCTCCCTAGTCAGCA
1 ATCCTATCTCCCTGGTCAGCAGTGGAAT-AGTTAAAGATTGAGAATCCTATCTCCCTGGTCAGCA
*
27025577 GTGGAATAGGCA-GAAGATTGAG
65 GTGGAATA-G-ATTAA-A--GAG
* * *
27025599 AATTCTATCTACCTGAG-CAGCAGTGGAATAGATT--A-A---AGAATCCTATCTCCCTGGACAG
1 -ATCCTATCTCCCTG-GTCAGCAGTGGAATAG-TTAAAGATTGAGAATCCTATCTCCCTGGTCAG
* *
27025657 CAGTAGAATAGGTTAAAGATTGTG
63 CAGTGGAATAGATTAAAGA----G
* *
27025681 AATCCTATCTCCCTGGGCAGCAGTGGAATAGATT-AA-A--GAG--CCCTATCTCCCTGGTCAGC
1 -ATCCTATCTCCCTGGTCAGCAGTGGAATAG-TTAAAGATTGAGAATCCTATCTCCCTGGTCAGC
*
27025740 GGTGGAATA-AGTTAAAGATTGTG
64 AGTGGAATAGA-TTAAAGA----G
* ** * * *
27025763 AATCCTATCTCCCTAGTCAGCAGTGGAATAGGCAGAAGATTGAGAATTCTATCTACCTGGGCAGC
1 -ATCCTATCTCCCTGGTCAGCAGTGGAATAGTTA-AAGATTGAGAATCCTATCTCCCTGGTCAGC
27025828 AGTGGAATAGATTAAAGA-
64 AGTGGAATAGATTAAAGAG
* ** * * * * * *
27025846 TTCCTATCTCCCTGAACAACAGTAGAATAGGTTAAAGATTGTGAATCCTACCTCCCTGGTTAGTA
1 ATCCTATCTCCCTGGTCAGCAGTGGAATA-GTTAAAGATTGAGAATCCTATCTCCCTGGTCAGCA
*
27025911 GTGGAATAGGTTGAAGATTGAG
65 GTGGAATAGATT-AA-A--GAG
* * * *
27025933 AATTCTATCTCCCTGGGCAGCAGTGGAATAGATT-AA-A-T-AG-CT-CTATCTCCCTGGTCAGT
1 -ATCCTATCTCCCTGGTCAGCAGTGGAATAG-TTAAAGATTGAGAATCCTATCTCCCTGGTCAGC
*
27025992 AGTGGAATAGGTTAAAGATTGTG
64 AGTGGAATAGATTAAAGA----G
* * *
27026015 AATCCTATCTCCCTGGACAGCATTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGC
1 -ATCCTATCTCCCTGGTCAGCAGTGGAATA-GTTAAAGATTGAGAATCCTATCTCCCTGGTCAGC
* *
27026080 AGTGGAATAGCCTGAAGATTGAG
64 AGTGGAATAG-ATTAA-A--GAG
* * * * * *
27026103 AATTCTATCTCCTTGGGCAGCAGTAGAATAGATT--A-A---AGAATCCTATCTCTCTGGACAGC
1 -ATCCTATCTCCCTGGTCAGCAGTGGAATAG-TTAAAGATTGAGAATCCTATCTCCCTGGTCAGC
*
27026162 AGTGGAATAGGTTAAAGATTGTG
64 AGTGGAATAGATTAAAGA----G
* * *
27026185 AATCCTATCTCCCTGGTCAGCAGTGAAATAGGTTGAAGATTGAGAA-CTCTATCTCTCTGGGT-A
1 -ATCCTATCTCCCTGGTCAGCAGTGGAATA-GTTAAAGATTGAGAATC-CTATCTCCCT-GGTCA
27026248 GCAGTGGAATAGATTGAAGATTGTAG
62 GCAGTGGAATAGATT-AA-A--G-AG
* * * * * * * *
27026274 GTCTTATTTCCTTGGTCAGCAGTGGAATAGGTTGAAGATCGTGAACCCTATCTCCCTGAG-CAGC
1 ATCCTATCTCCCTGGTCAGCAGTGGAATA-GTTAAAGATTGAGAATCCTATCTCCCTG-GTCAGC
27026338 AGTGGA
64 AGTGGA
27026344 GTAGGTTGAA
Statistics
Matches: 665, Mismatches: 93, Indels: 141
0.74 0.10 0.16
Matches are distributed among these distances:
78 6 0.01
80 3 0.00
81 10 0.02
82 359 0.54
83 17 0.03
84 9 0.01
85 5 0.01
86 12 0.02
87 9 0.01
88 218 0.33
89 11 0.02
90 2 0.00
92 3 0.00
93 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (82 bp):
ATCCTATCTCCCTGGTCAGCAGTGGAATAGTTAAAGATTGAGAATCCTATCTCCCTGGTCAGCAG
TGGAATAGATTAAAGAG
Found at i:27025596 original size:170 final size:168
Alignment explanation
Indices: 27025301--27026343 Score: 977
Period size: 170 Copynumber: 6.1 Consensus size: 168
27025291 ACCCCAGCCT
* * *
27025301 TATCTCCCTGGTCAGCAGTGGAATAGACTAAAGATTAAAGAATCCTATCTCCTTGGACAGCAGTG
1 TATCTCCCTGGACAGCAGTGGAATAGATTAAAGA-T---G-ATCCTATCTCCCTGGACAGCAGTG
* *
27025366 GAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGTAGTGGAATAGGTTA-AAGATTGTGA
61 GAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGG-TAGAAGATTGAGA
* * *
27025430 ATCCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGAGAATTC
125 ATCCTATCTCCCTGGTCAGCAGTGGAATAGATT-AA-A-T-AGAATCC
* * *
27025478 TATCTCCCTAGG-CAGCAGTGGAATAGATTAAAGA-G-CCCTATCTCCCTGGTCAGCGGTGGAAT
1 TATCTCCCT-GGACAGCAGTGGAATAGATTAAAGATGATCCTATCTCCCTGGACAGCAGTGGAAT
* * * *
27025540 AAGTTAAAGATTGTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGCAGAAGATTGAGAATTCT
65 AGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTAGAAGATTGAGAATCCT
*
27025605 ATCTACCTGAG-CAGCAGTGGAATAGATT-AA-AGAATCC
130 ATCTCCCTG-GTCAGCAGTGGAATAGATTAAATAGAATCC
* * *
27025642 TATCTCCCTGGACAGCAGTAGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGGCAGCAGTGG
1 TATCTCCCTGGACAGCAGTGGAATAGATTAAAGA---TG-ATCCTATCTCCCTGGACAGCAGTGG
* * * * *
27025707 AATAGATTAAAGA----G--CCCTATCTCCCTGGTCAGCGGTGGAATAAGTTA-AAGATTGTGAA
62 AATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAAT-AGGTAGAAGATTGAGAA
* * *
27025765 TCCTATCTCCCTAGTCAGCAGTGGAATAGGCA-GAAGATTGAGAATTC
126 TCCTATCTCCCTGGTCAGCAGTGGAATA-G-ATTAA-A-T-AGAATCC
* * * * *
27025812 TATCTACCTGGGCAGCAGTGGAATAGATTAAAGAT--TCCTATCTCCCTGAACAACAGTAGAATA
1 TATCTCCCTGGACAGCAGTGGAATAGATTAAAGATGATCCTATCTCCCTGGACAGCAGTGGAATA
* * * * *
27025875 GGTTAAAGATTGTGAATCCTACCTCCCTGGTTAGTAGTGGAATAGGTTGAAGATTGAGAATTCTA
66 GGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTAGAAGATTGAGAATCCTA
* *
27025940 TCTCCCTGGGCAGCAGTGGAATAGATTAAATAG-CT-C
131 TCTCCCTGGTCAGCAGTGGAATAGATTAAATAGAATCC
* * * *
27025976 TATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCATTGG
1 TATCTCCCTGGACAGCAGTGGAATAGATTAAAGA---TG-ATCCTATCTCCCTGGACAGCAGTGG
*
27026041 AATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGCCT-GAAGATTGAGAA
62 AATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAG-GTAGAAGATTGAGAA
* * * *
27026105 TTCTATCTCCTTGGGCAGCAGTAGAATAGATT-AA-AGAATCC
126 TCCTATCTCCCTGGTCAGCAGTGGAATAGATTAAATAGAATCC
* * * *
27026146 TATCTCTCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGA
1 TATCTCCCTGGACAGCAGTGGAATAGATTAAAGA---TG-ATCCTATCTCCCTGGACAGCAGTGG
* * * * *
27026211 AATAGGTTGAAGATTGAGAA-CTCTATCTCTCTGGGT-AGCAGTGGAATAGATTGAAGATTGTAG
62 AATAGGTTAAAGATTGTGAATC-CTATCTCCCT-GGTCAGCAGTGGAATAGGTAGAAGATTG-AG
* * * * * * *
27026274 -GTCTTATTTCCTTGGTCAGCAGTGGAATAGGTTGAAGATCGTGAACCC
124 AATCCTATCTCCCTGGTCAGCAGTGGAATAGATT-AA-AT--AGAATCC
27026322 TATCTCCCT-GAGCAGCAGTGGA
1 TATCTCCCTGGA-CAGCAGTGGA
27026344 GTAGGTTGAA
Statistics
Matches: 729, Mismatches: 90, Indels: 95
0.80 0.10 0.10
Matches are distributed among these distances:
163 3 0.00
164 155 0.21
165 5 0.01
166 5 0.01
167 5 0.01
168 7 0.01
169 12 0.02
170 470 0.64
171 7 0.01
172 2 0.00
173 1 0.00
175 2 0.00
176 23 0.03
177 30 0.04
178 2 0.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (168 bp):
TATCTCCCTGGACAGCAGTGGAATAGATTAAAGATGATCCTATCTCCCTGGACAGCAGTGGAATA
GGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTAGAAGATTGAGAATCCTA
TCTCCCTGGTCAGCAGTGGAATAGATTAAATAGAATCC
Found at i:27026765 original size:44 final size:41
Alignment explanation
Indices: 27026717--27026826 Score: 105
Period size: 40 Copynumber: 2.6 Consensus size: 41
27026707 CCAATAATTC
27026717 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACTACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAAA-T-CAGATCT
* * * *** * *
27026761 TATCTCTCTGAAGTTACAG-AGAGCAGATCGCATCTGGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATAAAATCAGATCT
*
27026801 TATCTCCCTAAAGTTGCAGTGGAGCA
1 TATCTCCCTGAAGTTGCAGTGGAGCA
27026827 AACTGAGTAA
Statistics
Matches: 53, Mismatches: 12, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
40 21 0.40
41 6 0.11
42 2 0.04
43 7 0.13
44 17 0.32
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (41 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATAAAATCAGATCT
Found at i:27026846 original size:44 final size:46
Alignment explanation
Indices: 27026797--27026913 Score: 116
Period size: 44 Copynumber: 2.6 Consensus size: 46
27026787 ATCGCATCTG
* *
27026797 GTCTTATCTCCCT-AAAGTTGCAGTGGAGCAAACTGAGT-AAGAAA
1 GTCTTATCTCCCTAAAAGTTGCAGTGGAGCAAACTGAATGAACAAA
* * * * * *
27026841 GTCTTATCCCCCTGAAA-TTACAGTGGGGCAGATTGAATGAACAAA
1 GTCTTATCTCCCTAAAAGTTGCAGTGGAGCAAACTGAATGAACAAA
* *
27026886 -TCCTATCTCCCTAAAAGTTGTAGTGGAG
1 GTCTTATCTCCCTAAAAGTTGCAGTGGAG
27026914 TGGATTAGAA
Statistics
Matches: 57, Mismatches: 13, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
44 41 0.72
45 16 0.28
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (46 bp):
GTCTTATCTCCCTAAAAGTTGCAGTGGAGCAAACTGAATGAACAAA
Found at i:27028694 original size:29 final size:30
Alignment explanation
Indices: 27028662--27028720 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
27028652 TTATATCTAT
* * *
27028662 AAATACGTATATATCTATTT-TATTTTTAA
1 AAATACCTAAATACCTATTTATATTTTTAA
*
27028691 AAATGCCTAAATACCTATTTATATTTTTAA
1 AAATACCTAAATACCTATTTATATTTTTAA
27028721 CACATATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 16 0.64
30 9 0.36
ACGTcount: A:0.39, C:0.10, G:0.03, T:0.47
Consensus pattern (30 bp):
AAATACCTAAATACCTATTTATATTTTTAA
Found at i:27029122 original size:16 final size:16
Alignment explanation
Indices: 27029101--27029131 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
27029091 TTTTTTACTC
27029101 AATTTTAAAAATAGAA
1 AATTTTAAAAATAGAA
*
27029117 AATTTTCAAAATAGA
1 AATTTTAAAAATAGA
27029132 GATAATACTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.32
Consensus pattern (16 bp):
AATTTTAAAAATAGAA
Found at i:27030922 original size:13 final size:13
Alignment explanation
Indices: 27030904--27030929 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27030894 ATTATGTTAG
27030904 CTATAAAAATTAT
1 CTATAAAAATTAT
27030917 CTATAAAAATTAT
1 CTATAAAAATTAT
27030930 GGTAGAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (13 bp):
CTATAAAAATTAT
Found at i:27032623 original size:13 final size:12
Alignment explanation
Indices: 27032596--27032631 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 12
27032586 AAAACAAAAC
27032596 AAAACTTAAAATT
1 AAAA-TTAAAATT
27032609 AAAATTAAAACTT
1 AAAATTAAAA-TT
27032622 AAAATTAAAA
1 AAAATTAAAA
27032632 ACTTTTTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 6 0.27
13 16 0.73
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.28
Consensus pattern (12 bp):
AAAATTAAAATT
Found at i:27032632 original size:7 final size:6
Alignment explanation
Indices: 27032596--27032631 Score: 54
Period size: 6 Copynumber: 5.7 Consensus size: 6
27032586 AAAACAAAAC
27032596 AAAACTT AAAATT AAAATT AAAACTT AAAATT AAAA
1 AAAA-TT AAAATT AAAATT AAAA-TT AAAATT AAAA
27032632 ACTTTTTCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 18 0.64
7 10 0.36
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.28
Consensus pattern (6 bp):
AAAATT
Found at i:27043378 original size:105 final size:105
Alignment explanation
Indices: 27043196--27043397 Score: 291
Period size: 105 Copynumber: 1.9 Consensus size: 105
27043186 CTTAATATTG
* * *
27043196 TCACGTATAATATATTGATCAATGCACATTGCAAGGATGGGATGATTGTTGATGCTGTAAATATT
1 TCACGTATAATATATTGATCAATGCACATTGCAAGGAAGGGATGATTGTTGAAGCTGAAAATATT
* *
27043261 GTTGGCACAATGAGAAAGCGAGGCATTGAGCCTGATGTTA
66 GTTGACACAATGAGAAAGCAAGGCATTGAGCCTGATGTTA
* ** *
27043301 TCACGTATAATATATTGGTTGATGCACATTGC-AGAGAAGGGATGGTT-TCTGAAGCTGAAAATA
1 TCACGTATAATATATTGATCAATGCACATTGCAAG-GAAGGGATGATTGT-TGAAGCTGAAAATA
27043364 TTGTTGACACAATGAGAAAGCAAGGCATTGAGCC
64 TTGTTGACACAATGAGAAAGCAAGGCATTGAGCC
27043398 AAATGTTGTT
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
104 3 0.03
105 83 0.97
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.29
Consensus pattern (105 bp):
TCACGTATAATATATTGATCAATGCACATTGCAAGGAAGGGATGATTGTTGAAGCTGAAAATATT
GTTGACACAATGAGAAAGCAAGGCATTGAGCCTGATGTTA
Found at i:27043436 original size:105 final size:105
Alignment explanation
Indices: 27043196--27043437 Score: 238
Period size: 105 Copynumber: 2.3 Consensus size: 105
27043186 CTTAATATTG
* * * * * * * * *
27043196 TCACGTATAATATATTGATCAATGCACATTGCA-AGGATGGGATGATTGT-TGATGCTGTAAATA
1 TCACCTATAATACATTAATAAAAGCACATTGCAGA-GAAGGGATGGTT-TCTGAAGCTGAAAATA
* * **
27043259 TTGTTGGCACAATGAGAAAGCGAGGCATTGAGCCTGATGTTA
64 TTGTTGACACAATGAGAAAGCAAGGCATTGAGCCAAATGTTA
* * ** ** *
27043301 TCACGTATAATATATTGGTTGATGCACATTGCAGAGAAGGGATGGTTTCTGAAGCTGAAAATATT
1 TCACCTATAATACATTAATAAAAGCACATTGCAGAGAAGGGATGGTTTCTGAAGCTGAAAATATT
*
27043366 GTTGACACAATGAGAAAGCAAGGCATTGAGCCAAATGTTG
66 GTTGACACAATGAGAAAGCAAGGCATTGAGCCAAATGTTA
*
27043406 TTACCTATAATACATTAATAAAAG-ACCATTGC
1 TCACCTATAATACATTAATAAAAGCA-CATTGC
27043438 TTGCGAGATA
Statistics
Matches: 114, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
104 2 0.02
105 111 0.97
106 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.29
Consensus pattern (105 bp):
TCACCTATAATACATTAATAAAAGCACATTGCAGAGAAGGGATGGTTTCTGAAGCTGAAAATATT
GTTGACACAATGAGAAAGCAAGGCATTGAGCCAAATGTTA
Found at i:27047773 original size:10 final size:10
Alignment explanation
Indices: 27047758--27047782 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
27047748 TGTACATGTA
27047758 TATATATATG
1 TATATATATG
27047768 TATATATATG
1 TATATATATG
27047778 TATAT
1 TATAT
27047783 TTGAAAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (10 bp):
TATATATATG
Found at i:27049339 original size:20 final size:19
Alignment explanation
Indices: 27049314--27049357 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
27049304 TTATGTGATT
27049314 AATATAAAT-AACTATTATAA
1 AATATAAATAAAC--TTATAA
*
27049334 AATATAATTAAACTTATAA
1 AATATAAATAAACTTATAA
27049353 AATAT
1 AATAT
27049358 TCTAGAAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 11 0.50
20 8 0.36
21 3 0.14
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (19 bp):
AATATAAATAAACTTATAA
Found at i:27049388 original size:18 final size:17
Alignment explanation
Indices: 27049327--27049388 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 17
27049317 ATAAATAACT
*
27049327 ATTATAAAATATAATTAA
1 ATTATAAAATAT-TTTAA
*
27049345 ACTTATAAAATATTCTAGA
1 A-TTATAAAATATTTTA-A
**
27049364 AGAATAAAATATTTTCAA
1 ATTATAAAATATTTT-AA
27049382 ATTATAA
1 ATTATAA
27049389 CTAATGTAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 20 0.59
19 14 0.41
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.37
Consensus pattern (17 bp):
ATTATAAAATATTTTAA
Found at i:27056133 original size:27 final size:27
Alignment explanation
Indices: 27056102--27056279 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
27056092 TAAATTGTAC
27056102 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
27056129 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
27056155 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
27056183 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
27056211 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
27056238 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
27056265 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
27056280 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:27056216 original size:82 final size:81
Alignment explanation
Indices: 27056103--27056258 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
27056093 AAATTGTACA
* *
27056103 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
27056167 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
27056184 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
27056249 TGCGAGTTGA
65 TGCGAATTGA
27056259 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:27056270 original size:82 final size:81
Alignment explanation
Indices: 27056099--27056279 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
27056089 GATTAAATTG
* *
27056099 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
27056164 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
27056180 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
27056244 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
27056262 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
27056280 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:27063433 original size:27 final size:27
Alignment explanation
Indices: 27063402--27063579 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
27063392 TAAATTGTAC
*
27063402 AGCACTAAGTGTGTGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
27063429 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
27063455 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
27063483 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
27063511 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
27063538 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
27063565 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
27063580 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:27063516 original size:82 final size:81
Alignment explanation
Indices: 27063403--27063558 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
27063393 AAATTGTACA
* * *
27063403 GCACTAAGTGTGTGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
27063467 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
27063484 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
27063549 TGCGAGTTGA
65 TGCGAATTGA
27063559 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 14 0.21
82 51 0.77
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:27063570 original size:82 final size:81
Alignment explanation
Indices: 27063399--27063579 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
27063389 GATTAAATTG
* * *
27063399 TACAGCACTAAGTGTGTGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
27063464 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
27063480 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
27063544 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
27063562 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
27063580 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 17 0.20
82 66 0.80
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:27081174 original size:27 final size:27
Alignment explanation
Indices: 27081143--27081320 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
27081133 TAAATTGTAC
*
27081143 AGCACTAAATGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
27081170 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
27081196 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
27081224 GGCACAAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
27081252 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
27081279 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
27081306 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
27081321 GACTCAATAT
Statistics
Matches: 126, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.83
28 22 0.17
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:27081257 original size:82 final size:81
Alignment explanation
Indices: 27081144--27081299 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
27081134 AAATTGTACA
* *
27081144 GCACTAAATGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAATGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
27081208 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
27081225 GCAC-AAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGT
1 GCACTAAA-TGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGT
*
27081289 GTGCGAGTTGA
64 GTGCGAATTGA
27081300 TTATATAGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
80 3 0.05
81 11 0.17
82 51 0.77
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAATGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:27081317 original size:82 final size:81
Alignment explanation
Indices: 27081140--27081320 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
27081130 GATTAAATTG
* * *
27081140 TACAGCACTAAATGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
27081205 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
27081221 TGCGGCACAAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
27081285 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
27081303 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
27081321 GACTCAATAT
Statistics
Matches: 81, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
81 16 0.20
82 65 0.80
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:27088477 original size:27 final size:27
Alignment explanation
Indices: 27088446--27088623 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
27088436 TAAATTGTAC
*
27088446 AGCACTAAGTGTGTGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
27088473 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
27088499 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
27088527 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
27088555 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
27088582 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
27088609 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
27088624 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:27088560 original size:82 final size:81
Alignment explanation
Indices: 27088447--27088602 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
27088437 AAATTGTACA
* * *
27088447 GCACTAAGTGTGTGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
27088511 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
27088528 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
27088593 TGCGAGTTGA
65 TGCGAATTGA
27088603 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 14 0.21
82 51 0.77
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:27088614 original size:82 final size:81
Alignment explanation
Indices: 27088443--27088623 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
27088433 GATTAAATTG
* * *
27088443 TACAGCACTAAGTGTGTGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
27088508 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
27088524 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
27088588 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
27088606 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
27088624 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 17 0.20
82 66 0.80
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:27092185 original size:20 final size:21
Alignment explanation
Indices: 27092156--27092194 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
27092146 ACCCTTTCAA
27092156 ATTTTCTTACTTT-CATTTAC
1 ATTTTCTTACTTTCCATTTAC
*
27092176 ATTTTGTTACTTTCCATTT
1 ATTTTCTTACTTTCCATTT
27092195 TATTTACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.18, C:0.18, G:0.03, T:0.62
Consensus pattern (21 bp):
ATTTTCTTACTTTCCATTTAC
Found at i:27103429 original size:22 final size:23
Alignment explanation
Indices: 27103401--27103445 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
27103391 ATTCAATCTT
*
27103401 AGATATGA-TATGCAATCTTAGA
1 AGATATGATTATGCAATATTAGA
*
27103423 AGATATGATTATGTAATATTAGA
1 AGATATGATTATGCAATATTAGA
27103446 GATTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.42, C:0.04, G:0.18, T:0.36
Consensus pattern (23 bp):
AGATATGATTATGCAATATTAGA
Found at i:27104047 original size:35 final size:37
Alignment explanation
Indices: 27103973--27104047 Score: 84
Period size: 37 Copynumber: 2.1 Consensus size: 37
27103963 CATACATACG
* *
27103973 TTTTATAATATATACATATACGTACACATTTTTTAATT
1 TTTTATAATATATACATACACGTA-ACATTTTATAATT
*
27104011 TTTTATAA-ATATATATACACGT-AC-TTTTATATATT
1 TTTTATAATATATACATACACGTAACATTTTATA-ATT
27104046 TT
1 TT
27104048 CTATGTTTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
34 6 0.18
35 7 0.21
37 12 0.36
38 8 0.24
ACGTcount: A:0.36, C:0.09, G:0.03, T:0.52
Consensus pattern (37 bp):
TTTTATAATATATACATACACGTAACATTTTATAATT
Found at i:27106282 original size:4 final size:4
Alignment explanation
Indices: 27106273--27106298 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
27106263 AAAAGAAAAG
27106273 AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AA
27106299 TAGAAGGTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:27108032 original size:105 final size:105
Alignment explanation
Indices: 27107857--27108087 Score: 311
Period size: 105 Copynumber: 2.2 Consensus size: 105
27107847 CAATATTTCA
* * * *
27107857 CTTGATATTGTCACGTATGATATATTGGTTGATGCGCATTGCAAGGATGGGAAGAATTCTAAAGC
1 CTTGATGTTGTTACGTATAATATATTGGTTGATGCGCATTGCAAGGAAGGGAAGAATTCTAAAGC
27107922 AATAGATACCATTGACACAATGA-AAAAGCAAGGCATTGAG
66 AATAGATACCATTGACACAATGATAAAA-CAAGGCATTGAG
* * ** * *
27107962 CTTGATGTTGTTACGTATAATATATTGGTTGATGCGCATTGCAGGGAAGGGATGGTTTTTGAAGC
1 CTTGATGTTGTTACGTATAATATATTGGTTGATGCGCATTGCAAGGAAGGGAAGAATTCTAAAGC
* * *
27108027 CATAGATACCGTTGACACAATGATAAAACAAGTCATTGAG
66 AATAGATACCATTGACACAATGATAAAACAAGGCATTGAG
* *
27108067 CCTAATGTTGTTACGTATAAT
1 CTTGATGTTGTTACGTATAAT
27108088 GCATTAATTA
Statistics
Matches: 110, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
105 106 0.96
106 4 0.04
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (105 bp):
CTTGATGTTGTTACGTATAATATATTGGTTGATGCGCATTGCAAGGAAGGGAAGAATTCTAAAGC
AATAGATACCATTGACACAATGATAAAACAAGGCATTGAG
Found at i:27111752 original size:105 final size:105
Alignment explanation
Indices: 27111563--27111768 Score: 245
Period size: 105 Copynumber: 2.0 Consensus size: 105
27111553 CTTAATATTT
* * * * *
27111563 TCACGTATAATATATTGATTGATGCACACTGCAAGGATGGAAAGATTTTTGAAGCACCAGATACC
1 TCACATATAATATATTGATTGATGCACACTGCAAGGAAGGAAAGATTTCTAAAGCACAAGATACC
*
27111628 GTTGATACAATGAAGAAGCA-AGGCATTGAGCCTAATTTAG
66 GTTGACACAATGAAGAAGCATA-GCATTGAGCCTAATTTAG
* * * * * ** **
27111668 TCACATATAATATATTGGTTGATGCGCATTGCAAGGAAGGGAAGGTTTCTAAAGCTGAAGATATT
1 TCACATATAATATATTGATTGATGCACACTGCAAGGAAGGAAAGATTTCTAAAGCACAAGATACC
27111733 GTTGACACAATGATA-AAGCATAGCATTGAGCCTAAT
66 GTTGACACAATGA-AGAAGCATAGCATTGAGCCTAAT
27111769 GTTGTTACCT
Statistics
Matches: 84, Mismatches: 15, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
105 82 0.98
106 2 0.02
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (105 bp):
TCACATATAATATATTGATTGATGCACACTGCAAGGAAGGAAAGATTTCTAAAGCACAAGATACC
GTTGACACAATGAAGAAGCATAGCATTGAGCCTAATTTAG
Found at i:27118421 original size:98 final size:99
Alignment explanation
Indices: 27118314--27118555 Score: 317
Period size: 102 Copynumber: 2.4 Consensus size: 99
27118304 AACAGATACC
* *
27118314 GTTGACACAATGAAAAAGCAAGGCATTGAGCCTGATGTTGTT-ATATATTGGTTGATGCGTATTG
1 GTTGACACAATGATAAAGCAAGGCATTGAGCCTGATGTTGTTAATATATTGGTTGATGCGCATTG
* * *
27118378 TAAGGAAGGAATGGTTTCTGAAGCTAAAGATGTT
66 CAAGGAAGGAATGGTTTCTGAAACTAAAGATATT
* * *
27118412 GTTGGCACAATGATAAAGCAAGGCATTGAGCCTGATGTTACATATAATATATTGGTTGTTGCGCA
1 GTTGACACAATGATAAAGCAAGGCATTGAGCCTGATGTT--GT-TAATATATTGGTTGATGCGCA
* *
27118477 TTGCAGGGAAGGAATGGTTTCTGAAACTGAAGATATT
63 TTGCAAGGAAGGAATGGTTTCTGAAACTAAAGATATT
* * *
27118514 GTTGACGCAATGATAAAGCATA-ACATTGAGCCTAATGTTGTT
1 GTTGACACAATGATAAAGCA-AGGCATTGAGCCTGATGTTGTT
27118556 GCCTATAGTG
Statistics
Matches: 124, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
98 37 0.30
99 1 0.01
100 2 0.02
101 1 0.01
102 82 0.66
103 1 0.01
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.31
Consensus pattern (99 bp):
GTTGACACAATGATAAAGCAAGGCATTGAGCCTGATGTTGTTAATATATTGGTTGATGCGCATTG
CAAGGAAGGAATGGTTTCTGAAACTAAAGATATT
Found at i:27132194 original size:221 final size:220
Alignment explanation
Indices: 27131737--27132398 Score: 1184
Period size: 221 Copynumber: 3.0 Consensus size: 220
27131727 AGATGCAATA
* * * *
27131737 ATAATTTTAGCAATTGGAGATAAAATTATTTGCAAAGAAGAGATGAAAAAGTAAAGGAGAAAGAA
1 ATAATTTTAGCAGTTGGAGAGAAAATTATTTGCAAAGAAAAGATGAAAAAGAAAAGGAGAAAGAA
*
27131802 ATAGGGAAAAAGAAAGCAAAATTTTAGTTTAATTGGAAAGAAAGCTATAGTTCTTTTGTGATCAG
66 ATAGGGAAAAAGAAAGCAAAATTTTAGTTTAATTGAAAAGAAAGCTATAGTTCTTTTGTGATCAG
*
27131867 GAAAATAGATTAAATACCTAGAC-TTTCTAAATTTGAGGGGTCTGGATGAAAAATTACCCTTTTT
131 GAAAAGAGATTAAATACCTAGACTTTTCTAAATTTGAGGGGTCTGGATGAAAAATTACCCTTTTT
* *
27131931 TCTAAAAATAAAAGGAAAATGGAGG
196 GCTGAAAATAAAAGGAAAATGGAGG
27131956 ATAATTTTAGCAGTTGGAGAGAAAATTATTTGCAAAGAAAAGATGAAAAAGAAAAGGAGAAAGAA
1 ATAATTTTAGCAGTTGGAGAGAAAATTATTTGCAAAGAAAAGATGAAAAAGAAAAGGAGAAAGAA
27132021 ATAGGGAAAAAGAAAGCAAAATTTTAGTTTAATTAGAAAAGAAAGCTATAGTTCTTTTGTGATCA
66 ATAGGGAAAAAGAAAGCAAAATTTTAGTTTAATT-GAAAAGAAAGCTATAGTTCTTTTGTGATCA
*
27132086 GGAAAAGAGATTAAATACCTAGACTTTTCTAAATTTGAGGGGTTTGGATGAAAAATTACCCTTTT
130 GGAAAAGAGATTAAATACCTAGACTTTTCTAAATTTGAGGGGTCTGGATGAAAAATTACCCTTTT
27132151 TGCTGAAAATAAAAGGAAAATGGAGG
195 TGCTGAAAATAAAAGGAAAATGGAGG
27132177 ATAATTTTAGCAGTTGGAGAGAAAATTATTTGCAAAGAAAAGATGAAAAAGAAAAGGAGAAAGAA
1 ATAATTTTAGCAGTTGGAGAGAAAATTATTTGCAAAGAAAAGATGAAAAAGAAAAGGAGAAAGAA
*
27132242 ATAAGGAAAAAGAAAGCAAAATTTTAGTTTAATTGGAAAAGAAAGCTATAGTTCTTTTGTGATCA
66 ATAGGGAAAAAGAAAGCAAAATTTTAGTTTAATT-GAAAAGAAAGCTATAGTTCTTTTGTGATCA
* *
27132307 GGAAAAGAGATTAAATACCTAGACTTTTCTAAATTTGAGGGGTCTAGATGAAACATTA-CCTTTT
130 GGAAAAGAGATTAAATACCTAGACTTTTCTAAATTTGAGGGGTCTGGATGAAAAATTACCCTTTT
27132371 TGCTGAAAATAAAAGGAAAATGGAGG
195 TGCTGAAAATAAAAGGAAAATGGAGG
27132397 AT
1 AT
27132399 TTTAGCATGA
Statistics
Matches: 427, Mismatches: 14, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
219 95 0.22
220 86 0.20
221 246 0.58
ACGTcount: A:0.45, C:0.07, G:0.21, T:0.27
Consensus pattern (220 bp):
ATAATTTTAGCAGTTGGAGAGAAAATTATTTGCAAAGAAAAGATGAAAAAGAAAAGGAGAAAGAA
ATAGGGAAAAAGAAAGCAAAATTTTAGTTTAATTGAAAAGAAAGCTATAGTTCTTTTGTGATCAG
GAAAAGAGATTAAATACCTAGACTTTTCTAAATTTGAGGGGTCTGGATGAAAAATTACCCTTTTT
GCTGAAAATAAAAGGAAAATGGAGG
Found at i:27132823 original size:19 final size:22
Alignment explanation
Indices: 27132799--27132847 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
27132789 CTGCATTTTT
27132799 GAAAATAAC-T-T-GGTCAACG
1 GAAAATAACTTATAGGTCAACG
* *
27132818 GAAAATGACTTATAGGTTAACG
1 GAAAATAACTTATAGGTCAACG
27132840 GAAAATAA
1 GAAAATAA
27132848 GTCATTTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 8 0.33
20 1 0.04
21 1 0.04
22 14 0.58
ACGTcount: A:0.47, C:0.10, G:0.20, T:0.22
Consensus pattern (22 bp):
GAAAATAACTTATAGGTCAACG
Found at i:27133033 original size:15 final size:13
Alignment explanation
Indices: 27132998--27133022 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27132988 TAAAATTTGA
27132998 AAATATTAAAATC
1 AAATATTAAAATC
27133011 AAATATTAAAAT
1 AAATATTAAAAT
27133023 TTCCAATATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
AAATATTAAAATC
Found at i:27139340 original size:13 final size:13
Alignment explanation
Indices: 27139322--27139346 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27139312 GCAAAACCTA
27139322 CAACTATCATTTG
1 CAACTATCATTTG
27139335 CAACTATCATTT
1 CAACTATCATTT
27139347 TTCCAGCAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.24, G:0.04, T:0.40
Consensus pattern (13 bp):
CAACTATCATTTG
Found at i:27143465 original size:25 final size:25
Alignment explanation
Indices: 27143421--27143510 Score: 94
Period size: 25 Copynumber: 3.6 Consensus size: 25
27143411 ACATGTATGT
27143421 TCATACGAGCT--ATAAACGGTAAGC
1 TCATACGAGCTGAAT-AACGGTAAGC
* *
27143445 TCCTTCGAGCTGAATAACGGTAAGC
1 TCATACGAGCTGAATAACGGTAAGC
* * *
27143470 TCATACGAGCTGAGTATCAGTAAGC
1 TCATACGAGCTGAATAACGGTAAGC
*
27143495 TCATAAGAGCTAGAAT
1 TCATACGAGCT-GAAT
27143511 TGGTAACCTT
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
24 9 0.17
25 40 0.74
26 5 0.09
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.23
Consensus pattern (25 bp):
TCATACGAGCTGAATAACGGTAAGC
Found at i:27152441 original size:54 final size:54
Alignment explanation
Indices: 27152357--27152595 Score: 288
Period size: 54 Copynumber: 4.4 Consensus size: 54
27152347 ATCATAACCT
* * * *
27152357 AAATACCCCCATAGGATAAAATGATCGAAATACCCTCATAGGGTAAAATTATCA
1 AAATACCCCTATAGGGTAAAATGATCGAAATACCCTCATAGGGTAAAATGACCA
* ** ** * *
27152411 AAATACCCCTATAGGGTAAAATGATTGAAATATTCTCATAGAATAGAATGACCG
1 AAATACCCCTATAGGGTAAAATGATCGAAATACCCTCATAGGGTAAAATGACCA
*
27152465 AAATACCCCTATAGGGTAAAATGATCGAAATACCCT-ACAGGGTAAAATGACCA
1 AAATACCCCTATAGGGTAAAATGATCGAAATACCCTCATAGGGTAAAATGACCA
* * *
27152518 AAATACCCCCATAGGGTAAAATGA-CTGAAATACCC-CTATAGGTTAAAATGACCG
1 AAATACCCCTATAGGGTAAAATGATC-GAAATACCCTC-ATAGGGTAAAATGACCA
27152572 AAATA-CCCTCATAGGGTAAAATGA
1 AAATACCCCT-ATAGGGTAAAATGA
27152596 CTGTTATACC
Statistics
Matches: 157, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
52 1 0.01
53 47 0.30
54 109 0.69
ACGTcount: A:0.43, C:0.19, G:0.16, T:0.22
Consensus pattern (54 bp):
AAATACCCCTATAGGGTAAAATGATCGAAATACCCTCATAGGGTAAAATGACCA
Found at i:27152547 original size:107 final size:108
Alignment explanation
Indices: 27152357--27152595 Score: 331
Period size: 107 Copynumber: 2.2 Consensus size: 108
27152347 ATCATAACCT
* * * * * *
27152357 AAATACCCCCATAGGATAAAATGATCGAAATACCCTCATAGGGTAAAATTATCAAAATACCCCTA
1 AAATACCCCTATAGGGTAAAATGATCGAAATACCCTCACAGGGTAAAATGACCAAAATACCCCCA
* ** *
27152422 TAGGGTAAAATGATTGAAATA-TTCTCATAGAATAGAATGACCG
66 TAGGGTAAAATGACTGAAATACCCCT-ATAGAATAAAATGACCG
27152465 AAATACCCCTATAGGGTAAAATGATCGAAATACCCT-ACAGGGTAAAATGACCAAAATACCCCCA
1 AAATACCCCTATAGGGTAAAATGATCGAAATACCCTCACAGGGTAAAATGACCAAAATACCCCCA
**
27152529 TAGGGTAAAATGACTGAAATACCCCTATAGGTTAAAATGACCG
66 TAGGGTAAAATGACTGAAATACCCCTATAGAATAAAATGACCG
27152572 AAATA-CCCTCATAGGGTAAAATGA
1 AAATACCCCT-ATAGGGTAAAATGA
27152596 CTGTTATACC
Statistics
Matches: 117, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
106 4 0.03
107 77 0.66
108 36 0.31
ACGTcount: A:0.43, C:0.19, G:0.16, T:0.22
Consensus pattern (108 bp):
AAATACCCCTATAGGGTAAAATGATCGAAATACCCTCACAGGGTAAAATGACCAAAATACCCCCA
TAGGGTAAAATGACTGAAATACCCCTATAGAATAAAATGACCG
Found at i:27152596 original size:27 final size:27
Alignment explanation
Indices: 27152357--27152596 Score: 254
Period size: 27 Copynumber: 8.9 Consensus size: 27
27152347 ATCATAACCT
* * *
27152357 AAATACCCCCATAGGATAAAATGATCG
1 AAATACCCTCATAGGGTAAAATGACCG
* * *
27152384 AAATACCCTCATAGGGTAAAATTATCA
1 AAATACCCTCATAGGGTAAAATGACCG
**
27152411 AAATACCC-CTATAGGGTAAAATGATTG
1 AAATACCCTC-ATAGGGTAAAATGACCG
** ** *
27152438 AAATATTCTCATAGAATAGAATGACCG
1 AAATACCCTCATAGGGTAAAATGACCG
*
27152465 AAATACCC-CTATAGGGTAAAATGATCG
1 AAATACCCTC-ATAGGGTAAAATGACCG
* *
27152492 AAATACCCT-ACAGGGTAAAATGACCA
1 AAATACCCTCATAGGGTAAAATGACCG
* *
27152518 AAATACCCCCATAGGGTAAAATGACTG
1 AAATACCCTCATAGGGTAAAATGACCG
*
27152545 AAATACCC-CTATAGGTTAAAATGACCG
1 AAATACCCTC-ATAGGGTAAAATGACCG
27152572 AAATACCCTCATAGGGTAAAATGAC
1 AAATACCCTCATAGGGTAAAATGAC
27152597 TGTTATACCT
Statistics
Matches: 176, Mismatches: 30, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
26 25 0.14
27 149 0.85
28 2 0.01
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.22
Consensus pattern (27 bp):
AAATACCCTCATAGGGTAAAATGACCG
Found at i:27155079 original size:16 final size:15
Alignment explanation
Indices: 27155054--27155087 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
27155044 AAAGTTGATA
*
27155054 ATAATTAATATATATT
1 ATAATAAATATA-ATT
27155070 ATAATAAATATAATT
1 ATAATAAATATAATT
27155085 ATA
1 ATA
27155088 TACTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:27155211 original size:30 final size:31
Alignment explanation
Indices: 27155153--27155212 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
27155143 CACCTTTGAA
* *
27155153 AATATTTACAAAAAAGAGACATCTAATTTTT
1 AATATTTACAAAAAAGAGACACCAAATTTTT
27155184 AATATTTAC-AAAAAGAG-CAACCAAATTTT
1 AATATTTACAAAAAAGAGAC-ACCAAATTTT
27155213 GAAAATAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 1 0.04
30 16 0.62
31 9 0.35
ACGTcount: A:0.50, C:0.12, G:0.07, T:0.32
Consensus pattern (31 bp):
AATATTTACAAAAAAGAGACACCAAATTTTT
Found at i:27163464 original size:3 final size:3
Alignment explanation
Indices: 27163456--27163482 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
27163446 TTTATGTCAT
27163456 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
27163483 ACATCATGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:27164102 original size:14 final size:15
Alignment explanation
Indices: 27164063--27164105 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
27164053 ATAAAATGAA
*
27164063 ATTCGAGTTGAATTG
1 ATTCGAGTTAAATTG
* *
27164078 AATCCAGTTAAATTG
1 ATTCGAGTTAAATTG
27164093 -TTCGAGTTAAATT
1 ATTCGAGTTAAATT
27164106 AAAAAATTAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (15 bp):
ATTCGAGTTAAATTG
Found at i:27164386 original size:18 final size:18
Alignment explanation
Indices: 27164364--27164399 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
27164354 AAATTTTAGA
*
27164364 ATTTTTATAAAT-ATTTT
1 ATTTTTAAAAATCATTTT
27164381 ATTTTTAAAAATCATTTT
1 ATTTTTAAAAATCATTTT
27164399 A
1 A
27164400 AATTATTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (18 bp):
ATTTTTAAAAATCATTTT
Found at i:27166962 original size:10 final size:9
Alignment explanation
Indices: 27166947--27166991 Score: 54
Period size: 10 Copynumber: 4.6 Consensus size: 9
27166937 AATTAACTAC
27166947 TTAAATTAAA
1 TTAAATT-AA
27166957 TTAAATTAA
1 TTAAATTAA
27166966 TTATAATTAA
1 TTA-AATTAA
27166976 TTAAATGTTAA
1 TTAAA--TTAA
27166987 TTAAA
1 TTAAA
27166992 GTATAAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
9 7 0.22
10 16 0.50
11 9 0.28
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (9 bp):
TTAAATTAA
Found at i:27168475 original size:25 final size:25
Alignment explanation
Indices: 27168446--27168495 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
27168436 TTTTTGTTGA
27168446 GAAAGAAACCAATTTGCTTATTTTC
1 GAAAGAAACCAATTTGCTTATTTTC
27168471 GAAAGAAACCAATTTGCTTATTTTC
1 GAAAGAAACCAATTTGCTTATTTTC
27168496 AAACTTGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (25 bp):
GAAAGAAACCAATTTGCTTATTTTC
Found at i:27171487 original size:22 final size:22
Alignment explanation
Indices: 27171460--27171505 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
27171450 TTTATTAACC
*
27171460 AAAATTAAATTGTA-TATAAATT
1 AAAATT-AATTATATTATAAATT
27171482 AAAATTAATTATATTATAAATT
1 AAAATTAATTATATTATAAATT
27171504 AA
1 AA
27171506 TAAATATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (22 bp):
AAAATTAATTATATTATAAATT
Found at i:27172564 original size:21 final size:20
Alignment explanation
Indices: 27172540--27172657 Score: 87
Period size: 21 Copynumber: 5.7 Consensus size: 20
27172530 AGAGTGTAAA
*
27172540 CAGGGGCACGTAAGTGCAATT
1 CAGGGGTACG-AAGTGCAATT
* *
27172561 CAGGGGTATCGAAGTACAA-A
1 CAGGGGTA-CGAAGTGCAATT
27172581 CAGGGGTACGCAAGTGCAATT
1 CAGGGGTACG-AAGTGCAATT
* * *
27172602 CTGGGGTACCGAAGTACAA-A
1 CAGGGGTA-CGAAGTGCAATT
* * *
27172622 CAGGGGCACATAAGTGTAATT
1 CAGGGGTAC-GAAGTGCAATT
27172643 CAGGGGTACCGAAGT
1 CAGGGGTA-CGAAGT
27172658 ACAGGCAGGG
Statistics
Matches: 74, Mismatches: 16, Indels: 14
0.71 0.15 0.13
Matches are distributed among these distances:
19 3 0.04
20 27 0.36
21 39 0.53
22 5 0.07
ACGTcount: A:0.32, C:0.18, G:0.32, T:0.18
Consensus pattern (20 bp):
CAGGGGTACGAAGTGCAATT
Found at i:27172698 original size:21 final size:21
Alignment explanation
Indices: 27172673--27172732 Score: 52
Period size: 20 Copynumber: 2.9 Consensus size: 21
27172663 CAGGGGCACG
27172673 CATGTGCAATTTAGGGGTAT-
1 CATGTGCAATTTAGGGGTATA
* * *
27172693 CAATGTACAA-ATAGGGGCATA
1 C-ATGTGCAATTTAGGGGTATA
* *
27172714 CATATGCAATTCAGGGGTA
1 CATGTGCAATTTAGGGGTA
27172733 CCGAAGTACA
Statistics
Matches: 29, Mismatches: 8, Indels: 5
0.69 0.19 0.12
Matches are distributed among these distances:
20 15 0.52
21 14 0.48
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.27
Consensus pattern (21 bp):
CATGTGCAATTTAGGGGTATA
Found at i:27172736 original size:123 final size:123
Alignment explanation
Indices: 27172537--27172808 Score: 368
Period size: 123 Copynumber: 2.2 Consensus size: 123
27172527 ACCAGAGTGT
* * *
27172537 AAACAGGGGCACGTAAGTGCAATTCAGGGGTATCGAAGTACAAACAGGGGTACGCAAGTGCAATT
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTATCGAAGTACAAACAGGGGCACACAAGTGCAATT
* *
27172602 CTGGGGTACCGAAGTACAAACAGGGGCACATAAGTGTAATTCAGGGGTACCGAAGTAC
66 CAGGGGTACCGAAGTACAAACAGGGGCACATAAGTGCAATTCAGGGGTACCGAAGTAC
** * * * *
27172660 AGGCAGGGGCACGCATGTGCAATTTAGGGGTATC-AATGTACAAATAGGGGCATACATA-TGCAA
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTATCGAA-GTACAAACAGGGGCACACA-AGTGCAA
* * * *
27172723 TTCAGGGGTACCGAAGTACAAACAGGGTCACGTATGTGCAATTCATGGGTACCGAAGTAC
64 TTCAGGGGTACCGAAGTACAAACAGGGGCACATAAGTGCAATTCAGGGGTACCGAAGTAC
*
27172783 AAACAGGGGCACGTATGCGCAATTCA
1 AAACAGGGGCACGTATGTGCAATTCA
27172809 TAGAATAATT
Statistics
Matches: 127, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
122 2 0.02
123 124 0.98
124 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.30, T:0.19
Consensus pattern (123 bp):
AAACAGGGGCACGTATGTGCAATTCAGGGGTATCGAAGTACAAACAGGGGCACACAAGTGCAATT
CAGGGGTACCGAAGTACAAACAGGGGCACATAAGTGCAATTCAGGGGTACCGAAGTAC
Found at i:27172809 original size:41 final size:41
Alignment explanation
Indices: 27172537--27172808 Score: 330
Period size: 41 Copynumber: 6.6 Consensus size: 41
27172527 ACCAGAGTGT
* *
27172537 AAACAGGGGCACGTAAGTGCAATTCAGGGGTATCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTAC
* * * *
27172578 AAACAGGGGTACGCAAGTGCAATTCTGGGGTACCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTAC
* * *
27172619 AAACAGGGGCACATAAGTGTAATTCAGGGGTACCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTAC
** * * *
27172660 AGGCAGGGGCACGCATGTGCAATTTAGGGGTATC-AATGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTACCGAA-GTAC
* *** *
27172701 AAATAGGGGCATACATATGCAATTCAGGGGTACCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTAC
* *
27172742 AAACAGGGTCACGTATGTGCAATTCATGGGTACCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTAC
*
27172783 AAACAGGGGCACGTATGCGCAATTCA
1 AAACAGGGGCACGTATGTGCAATTCA
27172809 TAGAATAATT
Statistics
Matches: 195, Mismatches: 34, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
40 2 0.01
41 191 0.98
42 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.30, T:0.19
Consensus pattern (41 bp):
AAACAGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTAC
Found at i:27202795 original size:20 final size:20
Alignment explanation
Indices: 27202770--27202810 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
27202760 GTTTGCATTA
27202770 TAGAAATACAAACCGTAAAC
1 TAGAAATACAAACCGTAAAC
27202790 TAGAAATACAAACCGTAAAC
1 TAGAAATACAAACCGTAAAC
27202810 T
1 T
27202811 CCGAGCAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.54, C:0.20, G:0.10, T:0.17
Consensus pattern (20 bp):
TAGAAATACAAACCGTAAAC
Found at i:27203692 original size:5 final size:5
Alignment explanation
Indices: 27203682--27203718 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
27203672 ATTGTGTTAG
27203682 TTTAT TTTAT TTTAT TTTA- TTT-T TTTATT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTA-T TTTAT TTT
27203719 TCCCAAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
4 6 0.21
5 18 0.62
6 5 0.17
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (5 bp):
TTTAT
Found at i:27203715 original size:14 final size:14
Alignment explanation
Indices: 27203682--27203719 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 14
27203672 ATTGTGTTAG
27203682 TTTATTTTATTTTAT
1 TTTATTTT-TTTTAT
27203697 TTTA-TTTTTTTATT
1 TTTATTTTTTTTA-T
27203711 TTTATTTTT
1 TTTATTTTT
27203720 CCCAAATTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 5 0.24
14 8 0.38
15 8 0.38
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTATTTTTTTTAT
Found at i:27204399 original size:33 final size:32
Alignment explanation
Indices: 27204353--27204428 Score: 98
Period size: 32 Copynumber: 2.3 Consensus size: 32
27204343 TTTCACACGC
* *
27204353 CCATGTGGACCACATGGGCTAGGCCAATTTAGG
1 CCATGTGGGCCACATGGGC-AAGCCAATTTAGG
* *
27204386 CCATGTGGGCCACATGGGCAAGCCATTTTGGG
1 CCATGTGGGCCACATGGGCAAGCCAATTTAGG
*
27204418 CCGTGTGGGCC
1 CCATGTGGGCC
27204429 CAAATTTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
32 20 0.53
33 18 0.47
ACGTcount: A:0.18, C:0.26, G:0.34, T:0.21
Consensus pattern (32 bp):
CCATGTGGGCCACATGGGCAAGCCAATTTAGG
Found at i:27206100 original size:27 final size:27
Alignment explanation
Indices: 27206068--27206133 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 27
27206058 TCTCTTTCGC
*
27206068 TTGTTTTTCTCTCCTCCATTCTCTTAT
1 TTGTTTTTCCCTCCTCCATTCTCTTAT
*
27206095 TTGTTTTTCCCTCTTCCATTCTCTTAT
1 TTGTTTTTCCCTCCTCCATTCTCTTAT
27206122 TTGTTTTTCCCT
1 TTGTTTTTCCCT
27206134 TTTTCTTGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.06, C:0.29, G:0.05, T:0.61
Consensus pattern (27 bp):
TTGTTTTTCCCTCCTCCATTCTCTTAT
Found at i:27210936 original size:7 final size:7
Alignment explanation
Indices: 27210884--27210921 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
27210874 CCCGTTTAGA
27210884 GTTCAAG
1 GTTCAAG
*
27210891 ATTCAAG
1 GTTCAAG
*
27210898 GTTCGAG
1 GTTCAAG
27210905 GTTCAAG
1 GTTCAAG
27210912 GTTCAAG
1 GTTCAAG
27210919 GTT
1 GTT
27210922 AGGTTTCAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (7 bp):
GTTCAAG
Found at i:27210941 original size:21 final size:20
Alignment explanation
Indices: 27210884--27210941 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 20
27210874 CCCGTTTAGA
27210884 GTTCAAGATTCAAGGTTCGAG
1 GTTCAAGATTCAAGGTTC-AG
*
27210905 GTTCAAGGTTCAAGGTT-AG
1 GTTCAAGATTCAAGGTTCAG
*
27210924 GTTTCAAGCTTCAGAGGT
1 G-TTCAAGATTCA-AGGT
27210942 CGGGGTTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.09
20 10 0.30
21 20 0.61
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (20 bp):
GTTCAAGATTCAAGGTTCAG
Found at i:27211333 original size:2 final size:2
Alignment explanation
Indices: 27211326--27211359 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
27211316 AACTATAAAA
*
27211326 AT AT AT AT AT AT AG AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
27211360 TAGATTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:27213457 original size:19 final size:19
Alignment explanation
Indices: 27213433--27213470 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
27213423 GTGTAATTTT
27213433 TAATG-ATTTCATTAAATTG
1 TAATGAATTT-ATTAAATTG
27213452 TAATGAAATTTATTAAATT
1 TAATG-AATTTATTAAATT
27213471 TGAAAAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 5 0.29
20 8 0.47
21 4 0.24
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.47
Consensus pattern (19 bp):
TAATGAATTTATTAAATTG
Found at i:27215962 original size:10 final size:11
Alignment explanation
Indices: 27215938--27215963 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
27215928 AGATACCAAC
27215938 AAAATTAAATA
1 AAAATTAAATA
27215949 AAAATTAAATA
1 AAAATTAAATA
27215960 AAAA
1 AAAA
27215964 ACAAATAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (11 bp):
AAAATTAAATA
Found at i:27218270 original size:41 final size:40
Alignment explanation
Indices: 27218215--27218380 Score: 170
Period size: 41 Copynumber: 4.0 Consensus size: 40
27218205 AAAGTACATC
*
27218215 CAGGGATACCGAAGTACAAACAGGGGCACGTATGTGCAATT
1 CAGGG-TACCGAAGTACAAACAGGGGCAAGTATGTGCAATT
* * ***
27218256 CAGAGGTACTGAAGTGCAAACAGGGGCAAGTATGCATAATT
1 CAG-GGTACCGAAGTACAAACAGGGGCAAGTATGTGCAATT
* * *
27218297 TAGGGGTACCGAAGTGCAAATAGGGGCAAGTATGTGCAATT
1 CA-GGGTACCGAAGTACAAACAGGGGCAAGTATGTGCAATT
* * * * *
27218338 TATGGGTGCCAAAGTACAAACAGGAGCACGTATGTGCAATT
1 CA-GGGTACCGAAGTACAAACAGGGGCAAGTATGTGCAATT
27218379 CA
1 CA
27218381 AAAATATTCT
Statistics
Matches: 103, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
41 100 0.97
42 3 0.03
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (40 bp):
CAGGGTACCGAAGTACAAACAGGGGCAAGTATGTGCAATT
Found at i:27218358 original size:82 final size:82
Alignment explanation
Indices: 27218216--27218371 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 82
27218206 AAGTACATCC
* ** * *
27218216 AGGGATACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAGAGGTACTGAAGTGCAAACAGGG
1 AGGGATACCGAAGTACAAACAGGGGCAAGTATGTGCAATTCAGAGGTACCAAAGTACAAACAGGA
27218281 GCAAGTATGCATAATTT
66 GCAAGTATGCATAATTT
* * * * *
27218298 AGGGGTACCGAAGTGCAAATAGGGGCAAGTATGTGCAATTTATG-GGTGCCAAAGTACAAACAGG
1 AGGGATACCGAAGTACAAACAGGGGCAAGTATGTGCAATTCA-GAGGTACCAAAGTACAAACAGG
*
27218362 AGCACGTATG
65 AGCAAGTATG
27218372 TGCAATTCAA
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
82 61 0.98
83 1 0.02
ACGTcount: A:0.35, C:0.15, G:0.31, T:0.19
Consensus pattern (82 bp):
AGGGATACCGAAGTACAAACAGGGGCAAGTATGTGCAATTCAGAGGTACCAAAGTACAAACAGGA
GCAAGTATGCATAATTT
Found at i:27226246 original size:66 final size:66
Alignment explanation
Indices: 27226135--27226264 Score: 179
Period size: 66 Copynumber: 2.0 Consensus size: 66
27226125 GTTCTTATCC
* * * *
27226135 GGACAGCTATCAGGTGCGGCGACAATTCTGGACACAATTTGGAATTAACCCATGCAGCGACATTG
1 GGACAGCTATCAGGTGCGGCGACAATTCTGAACACAATCTAGAATTAACCCATACAGCGACATTG
27226200 T
66 T
* * * * *
27226201 GGACATCTGTCAGGTGCGGCGACAATTCTGAACGCAATCTAGAATTAACTCATATAGCGACATT
1 GGACAGCTATCAGGTGCGGCGACAATTCTGAACACAATCTAGAATTAACCCATACAGCGACATT
27226265 AATGCAATAA
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
66 55 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (66 bp):
GGACAGCTATCAGGTGCGGCGACAATTCTGAACACAATCTAGAATTAACCCATACAGCGACATTG
T
Found at i:27226684 original size:41 final size:41
Alignment explanation
Indices: 27226631--27226745 Score: 142
Period size: 41 Copynumber: 2.8 Consensus size: 41
27226621 CATACATGGG
* * * *
27226631 TACC-AAAGTACAAACAGGAGCATGTATTTGCAATTTAGGGA
1 TACCGAAA-TACAAATAGGGGCATGTATATGCAATTCAGGGA
* *
27226672 TACCGAAATACAAATAGGGGCAAGTATATGCAATTCAGGGG
1 TACCGAAATACAAATAGGGGCATGTATATGCAATTCAGGGA
* *
27226713 TACCGAAGTACAAATAGGGGCATGTATGTGCAA
1 TACCGAAATACAAATAGGGGCATGTATATGCAA
27226746 GTCAACAATA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
41 61 0.95
42 3 0.05
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (41 bp):
TACCGAAATACAAATAGGGGCATGTATATGCAATTCAGGGA
Found at i:27232922 original size:17 final size:17
Alignment explanation
Indices: 27232900--27232934 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
27232890 GACTGTGTGC
27232900 CTACATACAACCCGTTG
1 CTACATACAACCCGTTG
27232917 CTACATACAACCCGTTG
1 CTACATACAACCCGTTG
27232934 C
1 C
27232935 CTTAAAGTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.37, G:0.11, T:0.23
Consensus pattern (17 bp):
CTACATACAACCCGTTG
Found at i:27235029 original size:3 final size:3
Alignment explanation
Indices: 27235021--27235048 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
27235011 TATAAATTTA
27235021 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
27235049 TATAGATCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:27237612 original size:12 final size:12
Alignment explanation
Indices: 27237595--27237621 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
27237585 CAAAATTCAA
27237595 ATTTTAAAAAAT
1 ATTTTAAAAAAT
27237607 ATTTTAAAAAAT
1 ATTTTAAAAAAT
27237619 ATT
1 ATT
27237622 ACAAAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
ATTTTAAAAAAT
Found at i:27237674 original size:17 final size:17
Alignment explanation
Indices: 27237640--27237674 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
27237630 ATTGACAATT
* *
27237640 TAAAAAAATTATTTAAA
1 TAAAAAAATTACTAAAA
27237657 TAAAAAAATTACTAAAA
1 TAAAAAAATTACTAAAA
27237674 T
1 T
27237675 TTTCCAAAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (17 bp):
TAAAAAAATTACTAAAA
Found at i:27237756 original size:16 final size:17
Alignment explanation
Indices: 27237721--27237765 Score: 60
Period size: 15 Copynumber: 2.8 Consensus size: 17
27237711 AATAATCAGA
27237721 AAAAATAA-AATACATT
1 AAAAATAATAATACATT
27237737 -AAAATAATAA-ACATT
1 AAAAATAATAATACATT
27237752 AAAAATATATAATA
1 AAAAATA-ATAATA
27237766 TTCTTACCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 12 0.48
16 8 0.32
17 4 0.16
18 1 0.04
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (17 bp):
AAAAATAATAATACATT
Found at i:27242768 original size:14 final size:15
Alignment explanation
Indices: 27242740--27242768 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
27242730 TTTATTTTAT
27242740 TATATCATAGTTAGA
1 TATATCATAGTTAGA
27242755 TATATCAT-GTTAGA
1 TATATCATAGTTAGA
27242769 GGGTGTGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41
Consensus pattern (15 bp):
TATATCATAGTTAGA
Found at i:27244020 original size:64 final size:64
Alignment explanation
Indices: 27243952--27244163 Score: 180
Period size: 64 Copynumber: 3.3 Consensus size: 64
27243942 ATCATTAAGA
*
27243952 TTAGCTGATTTAATATCGTAACCTAAGTTCATTTGATTTAAGATCATGAAAAATTTTATTTGAG
1 TTAGCTGATTTAATATCGCAACCTAAGTTCATTTGATTTAAGATCATGAAAAATTTTATTTGAG
* ** * * * * **
27244016 TTAGCTGATTTAATATCGCAACTCCAAACAACTCA-CTAATTTAAGATC--G-CAACTGATATCA
1 TTAGCTGATTTAATATCGCAA--CC-TA-AGTTCATTTGATTTAAGATCATGAAAAATTTTAT--
*
27244077 TTAAGG
60 TTGA-G
* * * * *
27244083 TTAGTTGATTTAATATCGCAATCTAAGTTCGTTTGATTCAAGATCATGAACAATTTTATTTGAG
1 TTAGCTGATTTAATATCGCAACCTAAGTTCATTTGATTTAAGATCATGAAAAATTTTATTTGAG
*
27244147 TTAGTTGATTTAATATC
1 TTAGCTGATTTAATATC
27244164 ATAGCTCTGA
Statistics
Matches: 111, Mismatches: 26, Indels: 22
0.70 0.16 0.14
Matches are distributed among these distances:
63 3 0.03
64 55 0.50
65 5 0.05
66 6 0.05
67 38 0.34
68 4 0.04
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.39
Consensus pattern (64 bp):
TTAGCTGATTTAATATCGCAACCTAAGTTCATTTGATTTAAGATCATGAAAAATTTTATTTGAG
Found at i:27244190 original size:131 final size:131
Alignment explanation
Indices: 27243863--27244163 Score: 449
Period size: 131 Copynumber: 2.3 Consensus size: 131
27243853 TATTTTATCT
* * *
27243863 ATCATGAACAATTTTATTTGAGTTAACTGATTTAAGATCGCATCTCCGAACAACTCGCTGATTTA
1 ATCATGAACAATTTTATTTGAGTTAGCTGATTTAATATCGCAACTCCGAACAACTCGCTGATTTA
* * * * *
27243928 ATATTGCAGCTGATATCATTAAGATTAGCTGATTTAATATCGTAACCTAAGTTCATTTGATTTAA
66 AGATCGCAACTGATATCATTAAGATTAGCTGATTTAATATCGCAACCTAAGTTCATTTGATTCAA
27243993 G
131 G
* * * *
27243994 ATCATGAAAAATTTTATTTGAGTTAGCTGATTTAATATCGCAACTCCAAACAACTCACTAATTTA
1 ATCATGAACAATTTTATTTGAGTTAGCTGATTTAATATCGCAACTCCGAACAACTCGCTGATTTA
* * * *
27244059 AGATCGCAACTGATATCATTAAGGTTAGTTGATTTAATATCGCAATCTAAGTTCGTTTGATTCAA
66 AGATCGCAACTGATATCATTAAGATTAGCTGATTTAATATCGCAACCTAAGTTCATTTGATTCAA
27244124 G
131 G
*
27244125 ATCATGAACAATTTTATTTGAGTTAGTTGATTTAATATC
1 ATCATGAACAATTTTATTTGAGTTAGCTGATTTAATATC
27244164 ATAGCTCTGA
Statistics
Matches: 152, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
131 152 1.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (131 bp):
ATCATGAACAATTTTATTTGAGTTAGCTGATTTAATATCGCAACTCCGAACAACTCGCTGATTTA
AGATCGCAACTGATATCATTAAGATTAGCTGATTTAATATCGCAACCTAAGTTCATTTGATTCAA
G
Found at i:27244254 original size:95 final size:95
Alignment explanation
Indices: 27244088--27244291 Score: 275
Period size: 95 Copynumber: 2.1 Consensus size: 95
27244078 TAAGGTTAGT
** * *
27244088 TGATTTAATATCGCAATCTAAGTTCGTTTGATTCAAGATCATGAACAATTTTATTTGAGTTAGTT
1 TGATTTAATATCATAACCTAAGTTCATTTGATTCAAGATCATGAACAATTTTATTTGAGTTAGTT
* * * *
27244153 GATTTAATATCATAGCTCTGAATAGCTCGC
66 GATTTAAGATCACAACTCCGAATAGCTCGC
* *
27244183 TGGTTTAATATCATAACCTAAGTTCATTT-AGTTTAAGATCATGAACAATTTTATTTGAGTTAGT
1 TGATTTAATATCATAACCTAAGTTCATTTGA-TTCAAGATCATGAACAATTTTATTTGAGTTAGT
* *
27244247 TGATTTAAGATCGCAACTCCGGATAGCTCGC
65 TGATTTAAGATCACAACTCCGAATAGCTCGC
*
27244278 TGATTTAAGATCAT
1 TGATTTAATATCAT
27244292 GACTGATGTC
Statistics
Matches: 94, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
94 1 0.01
95 93 0.99
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (95 bp):
TGATTTAATATCATAACCTAAGTTCATTTGATTCAAGATCATGAACAATTTTATTTGAGTTAGTT
GATTTAAGATCACAACTCCGAATAGCTCGC
Found at i:27244358 original size:226 final size:226
Alignment explanation
Indices: 27243955--27244485 Score: 704
Period size: 226 Copynumber: 2.3 Consensus size: 226
27243945 ATTAAGATTA
27243955 GCTGATTTAATATCGTAACCTAAGTTCATTTGATTTAAGATCATGAAAAATTTTATTTGAGTTAG
1 GCTGATTTAATATCGTAACCTAAGTTCATTTGATTTAAGATCATGAAAAATTTTATTTGAGTTAG
* *
27244020 CTGATTTAATATCGCAACTCCAAACAACTCACTAATTTAAGATCGCAACTGATATCATTAAGGTT
66 CTGATTTAAGATCGCAACTCCAAACAACTCACTAATTTAAGATCACAACTGATATCATTAAGGTT
* * * * * * *
27244085 AGTTGATTTAATATCGCAATCTAAGTTCGTTTGATTCAAGATCATGAACAATTTTATTTGAGTTA
131 AGCTAATTTAAGATCGCAACCTAAGTTCATTTGATTCAAGATCATGAACAATTTCACTTGAGTTA
* * * * *
27244150 GTTGATTTAATATCATAGCTCTGAATAGCTC
196 GTTGATTTAAGATCACAACTCCGAACAGCTC
* * *
27244181 GCTGGTTTAATATCATAACCTAAGTTCATTT-AGTTTAAGATCATGAACAATTTTATTTGAGTTA
1 GCTGATTTAATATCGTAACCTAAGTTCATTTGA-TTTAAGATCATGAAAAATTTTATTTGAGTTA
* ** * * * * ** *
27244245 GTTGATTTAAGATCGCAACTCCGGATAGCTCGCTGATTTAAGATCATGACTGATGTCATTAAGGT
65 GCTGATTTAAGATCGCAACTCCAAACAACTCACTAATTTAAGATCACAACTGATATCATTAAGGT
* * *
27244310 TAGCTAATTTAAGATCGCAACCTAATTTCATTTGATTTAAGCTCATGAACAATTTCACTTGAGTT
130 TAGCTAATTTAAGATCGCAACCTAAGTTCATTTGATTCAAGATCATGAACAATTTCACTTGAGTT
* *
27244375 AGTTGATTTAAGATCGCAACTCCGAACAGTTC
195 AGTTGATTTAAGATCACAACTCCGAACAGCTC
* * * * * *
27244407 GTTGATTTAAGATCGTAACCTAAGTTCATTTGATTTAAGACCATGAATAATTTTATTTAAGCTAG
1 GCTGATTTAATATCGTAACCTAAGTTCATTTGATTTAAGATCATGAAAAATTTTATTTGAGTTAG
27244472 CTGATTTAAGATCG
66 CTGATTTAAGATCG
27244486 TAGCTAATAT
Statistics
Matches: 262, Mismatches: 41, Indels: 4
0.85 0.13 0.01
Matches are distributed among these distances:
225 1 0.00
226 260 0.99
227 1 0.00
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (226 bp):
GCTGATTTAATATCGTAACCTAAGTTCATTTGATTTAAGATCATGAAAAATTTTATTTGAGTTAG
CTGATTTAAGATCGCAACTCCAAACAACTCACTAATTTAAGATCACAACTGATATCATTAAGGTT
AGCTAATTTAAGATCGCAACCTAAGTTCATTTGATTCAAGATCATGAACAATTTCACTTGAGTTA
GTTGATTTAAGATCACAACTCCGAACAGCTC
Found at i:27245211 original size:12 final size:12
Alignment explanation
Indices: 27245181--27245212 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
27245171 CCTATGTAAC
*
27245181 TTTTCAACCTCT
1 TTTTCAGCCTCT
27245193 TTTTCAGCCTCT
1 TTTTCAGCCTCT
27245205 TTTTCAGC
1 TTTTCAGC
27245213 AAAGGTGAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.31, G:0.06, T:0.50
Consensus pattern (12 bp):
TTTTCAGCCTCT
Found at i:27248587 original size:13 final size:13
Alignment explanation
Indices: 27248569--27248594 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27248559 AACTTAGCCG
27248569 TTCCTTCTGTTTC
1 TTCCTTCTGTTTC
27248582 TTCCTTCTGTTTC
1 TTCCTTCTGTTTC
27248595 AGTTTAGCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.31, G:0.08, T:0.62
Consensus pattern (13 bp):
TTCCTTCTGTTTC
Found at i:27251063 original size:91 final size:91
Alignment explanation
Indices: 27250907--27251114 Score: 292
Period size: 91 Copynumber: 2.3 Consensus size: 91
27250897 GAATCCTTAG
* *
27250907 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
* *
27250972 ATTTAAT-ATTAATTATTTTAAATTGTA
65 ATGTAATAATT-ATTATTTTAAATTATA
* *
27250999 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTATA
*
27251064 TGTAATAATTATTTTTTTAAATTATA
66 TGTAATAATTATTATTTTAAATTATA
* * * *
27251090 CAAATTCATAAAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
27251115 GTTATAATTA
Statistics
Matches: 104, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
91 85 0.82
92 19 0.18
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTATA
TGTAATAATTATTATTTTAAATTATA
Found at i:27251291 original size:15 final size:15
Alignment explanation
Indices: 27251256--27251297 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
27251246 TTAAGAATTT
*
27251256 TATTAAATTAT-ATA
1 TATTTAATTATAATA
27251270 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
27251284 TATTTAATAATAAT
1 TATTTAATTATAAT
27251298 TATGTTAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:27251329 original size:59 final size:58
Alignment explanation
Indices: 27251265--27251663 Score: 201
Period size: 61 Copynumber: 6.7 Consensus size: 58
27251255 TTATTAAATT
27251265 ATATATTTTAATTATAATATATTTAATAATAATTATGTTAGTTTATATTTTACAGTATC
1 ATATATTTTAATTATAATATATTTAATAATAATTATGTTA-TTTATATTTTACAGTATC
* * * * * * * * * *
27251324 ATATATTATGATTTGAGTAA-ATTCATATAAGAAT-ATTA-ATTATTAAGAATTTTATTA-AATT
1 ATATATT-TTAATT-A-TAATA-T-ATTTAATAATAATTATGTTATTTA-TATTTTA-CAGTATC
* *
27251385 ATATATTTTAATTAAAATATATTTAATAATAATTGTGTTAATTTATATTTTACAGTATC
1 ATATATTTTAATTATAATATATTTAATAATAATTATGTT-ATTTATATTTTACAGTATC
* * * * * * * * * *
27251444 ATATATTATGATTTGAGTAA-ATTCATATAAGAAT-ATTA-ATTATTAAGAATTTTATTA-AATT
1 ATATATT-TTAATT-A-TAATA-T-ATTTAATAATAATTATGTTATTTA-TATTTTA-CAGTATC
*
27251505 ATATATTTTAATTATAATATATTTAATAAAAATTATGTTAATTTATATTTTACAGTATC
1 ATATATTTTAATTATAATATATTTAATAATAATTATGTT-ATTTATATTTTACAGTATC
* * * * * * * * * *
27251564 ATATATTATGATTTGAGTAA-ATTCATATAAGAAT-ATTA-ATTATTAAGAATTTTATTA-AATT
1 ATATATT-TTAATT-A-TAATA-T-ATTTAATAATAATTATGTTATTTA-TATTTTA-CAGTATC
27251625 ATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 ATATATTTTAATTATAATATATTTAATAATAATTATGTT
27251664 TAACTATGAT
Statistics
Matches: 245, Mismatches: 61, Indels: 68
0.66 0.16 0.18
Matches are distributed among these distances:
57 23 0.09
58 24 0.10
59 49 0.20
60 43 0.18
61 58 0.24
62 25 0.10
63 23 0.09
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (58 bp):
ATATATTTTAATTATAATATATTTAATAATAATTATGTTATTTATATTTTACAGTATC
Found at i:27251389 original size:61 final size:61
Alignment explanation
Indices: 27251324--27251631 Score: 251
Period size: 61 Copynumber: 5.1 Consensus size: 61
27251314 TTACAGTATC
27251324 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * ** * * * * * * * * * *
27251385 ATATATTTTAATTAAAATATATTTA-ATAATAAT-TGT-GTTAATTTA-TATTTTA-CAGTATC
1 ATATATTATGATTTGAGTAAATTCATATAAGAATAT-TAATT-ATTAAGAATTTTATTA-AATT
27251444 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * * * * * *
27251505 ATATATTTTAATTAT-AATATATTTA-ATAA-AA-ATTATGTTAATTTA-TATTTTA-CAGTATC
1 ATATATTATGATT-TGAGTAAATTCATATAAGAATATTA-ATT-ATTAAGAATTTTATTA-AATT
27251564 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
27251625 ATATATT
1 ATATATT
27251632 TTAATTATAA
Statistics
Matches: 179, Mismatches: 50, Indels: 36
0.68 0.19 0.14
Matches are distributed among these distances:
58 7 0.04
59 59 0.33
60 40 0.22
61 66 0.37
62 7 0.04
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.48
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:27251400 original size:18 final size:17
Alignment explanation
Indices: 27251372--27251406 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
27251362 ATTATTAAGA
*
27251372 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
27251389 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
27251407 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:27251407 original size:120 final size:120
Alignment explanation
Indices: 27251130--27251663 Score: 930
Period size: 120 Copynumber: 4.4 Consensus size: 120
27251120 AATTATTTTA
* * *
27251130 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTT-TCA-
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT--AATTTAT-AT
* *
27251192 TTTATAGTATCATATATTATGATTTGAGAAAATTCATATATAGAATATTAATTATTAAG
63 TTTACAGTATCATATATTATGATTTGAGTAAATTCATATA-AGAATATTAATTATTAAG
*
27251251 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAGTTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
27251316 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
27251371 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTGTGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
27251436 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
27251491 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAAAAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
27251556 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
27251611 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
27251664 TAACTATGAT
Statistics
Matches: 397, Mismatches: 13, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
120 309 0.78
121 86 0.22
122 2 0.01
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:27251646 original size:16 final size:16
Alignment explanation
Indices: 27251625--27251666 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
27251615 TTATTAAATT
*
27251625 ATATATTTTAATTATA
1 ATATATTTTAATAATA
27251641 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
27251656 AT-TATGTTTAA
1 ATATAT-TTTAA
27251667 CTATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:27251651 original size:15 final size:15
Alignment explanation
Indices: 27251616--27251657 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
27251606 TTAAGAATTT
*
27251616 TATTAAATTAT-ATA
1 TATTTAATTATAATA
27251630 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
27251644 TATTTAATAATAAT
1 TATTTAATTATAAT
27251658 TATGTTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:27251778 original size:157 final size:157
Alignment explanation
Indices: 27251600--27251916 Score: 562
Period size: 157 Copynumber: 2.0 Consensus size: 157
27251590 ATAAGAATAT
*
27251600 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
* *
27251665 AACTATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAAAAATAACAA
66 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAAAAATAACAA
*
27251730 TAATAATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTATGC
27251757 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
* *
27251822 AAATATGATTAAATTATTTATTATTGATAATAATAATTTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAAAAATAACAA
* *
27251887 TAATCATTTACTAAAACAAATTTATGC
131 TAATAATTTACCAAAACAAATTTATGC
27251914 TAA
1 TAA
27251917 GGGTATTCTA
Statistics
Matches: 152, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
157 152 1.00
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.45
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAAAAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:27251797 original size:18 final size:17
Alignment explanation
Indices: 27251769--27251803 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
27251759 ATTATTAAGA
*
27251769 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
27251786 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
27251804 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:27251837 original size:75 final size:75
Alignment explanation
Indices: 27251601--27251839 Score: 189
Period size: 75 Copynumber: 3.1 Consensus size: 75
27251591 TAAGAATATT
*
27251601 AATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
*
27251666 ACTATGATTA
66 AATATGATTA
* ** * * * * **
27251676 AATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAAAA-ATA-ACAATAATAATT-
1 AATTATTAAGAATT-TTATT-A-AA--TTA-TATATTTTAATTAAAATATATTTAATAATAATTA
**** * * *
27251738 TACCAAAACAAAT-TTCTGCT
60 T-GTTTAA-ATATGAT-T--A
27251758 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
27251823 AATATGATTA
66 AATATGATTA
27251833 AATTATT
1 AATTATT
27251840 TATTATTGAT
Statistics
Matches: 115, Mismatches: 34, Indels: 30
0.64 0.19 0.17
Matches are distributed among these distances:
75 18 0.16
76 17 0.15
77 11 0.10
78 16 0.14
79 16 0.14
80 10 0.09
81 16 0.14
82 11 0.10
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.47
Consensus pattern (75 bp):
AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
AATATGATTA
Found at i:27258480 original size:20 final size:19
Alignment explanation
Indices: 27258448--27258489 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
27258438 TAAAAAATTC
27258448 AAAATTTCAAAAATTATGAA
1 AAAATTTCAAAAATTAT-AA
27258468 AAAATCTTC-AAAATTATAA
1 AAAAT-TTCAAAAATTATAA
27258487 AAA
1 AAA
27258490 TATATTAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.24
20 13 0.62
21 3 0.14
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.29
Consensus pattern (19 bp):
AAAATTTCAAAAATTATAA
Found at i:27265557 original size:24 final size:26
Alignment explanation
Indices: 27265530--27265592 Score: 64
Period size: 25 Copynumber: 2.5 Consensus size: 26
27265520 ATTAACTTGC
27265530 ATGAGCTTCTCGATT-A-CGGCTCT-T
1 ATGAGCTTCTCGATTAATC-GCTCTCT
*
27265554 ATGAG-TTGCCCGATTAATCGCTCTCT
1 ATGAGCTT-CTCGATTAATCGCTCTCT
27265580 A-GAGCTTCTCGAT
1 ATGAGCTTCTCGAT
27265593 ATTTGGCTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
23 2 0.06
24 11 0.34
25 14 0.44
26 5 0.16
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (26 bp):
ATGAGCTTCTCGATTAATCGCTCTCT
Found at i:27265630 original size:24 final size:25
Alignment explanation
Indices: 27265596--27265647 Score: 79
Period size: 24 Copynumber: 2.1 Consensus size: 25
27265586 TCTCGATATT
* *
27265596 TGGCTCTCTTGAGCTTCCCGTT-TA
1 TGGCTCGCTTGAGCTTCCCCTTATA
27265620 TGGCTCGCTTGAGCTTCCCCTTATA
1 TGGCTCGCTTGAGCTTCCCCTTATA
27265645 TGG
1 TGG
27265648 AACACATGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 20 0.80
25 5 0.20
ACGTcount: A:0.10, C:0.29, G:0.23, T:0.38
Consensus pattern (25 bp):
TGGCTCGCTTGAGCTTCCCCTTATA
Found at i:27268408 original size:27 final size:27
Alignment explanation
Indices: 27268284--27268407 Score: 135
Period size: 27 Copynumber: 4.6 Consensus size: 27
27268274 ATTCATGGGC
**
27268284 AAATGATAGAAATAATCTCGAAGGGTA
1 AAATGATAGAAATACCCTCGAAGGGTA
27268311 AAATGACT-GAAATACCCTCGAAGGGTA
1 AAATGA-TAGAAATACCCTCGAAGGGTA
* * * *
27268338 AAAT-AAAAAAATACCCTCAAAGGATA
1 AAATGATAGAAATACCCTCGAAGGGTA
* * *
27268364 AAATGATTGAAATACCCCCGAAGGGTG
1 AAATGATAGAAATACCCTCGAAGGGTA
*
27268391 AAATGATCGAAATACCC
1 AAATGATAGAAATACCC
27268408 CTATAGTGTA
Statistics
Matches: 80, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
26 21 0.26
27 58 0.73
28 1 0.01
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.19
Consensus pattern (27 bp):
AAATGATAGAAATACCCTCGAAGGGTA
Found at i:27268869 original size:28 final size:28
Alignment explanation
Indices: 27268816--27268878 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
27268806 CCCACATTAC
*
27268816 ACTGTTACTGCTTAGGGATAAGGCCCAG
1 ACTGTTACTGCTTAAGGATAAGGCCCAG
*
27268844 ACTGTTACTGCTTAAGGCTCAA-GCCCAG
1 ACTGTTACTGCTTAAGGAT-AAGGCCCAG
*
27268872 GCTGTTA
1 ACTGTTA
27268879 TTGCATGTCG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
28 29 0.94
29 2 0.06
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (28 bp):
ACTGTTACTGCTTAAGGATAAGGCCCAG
Found at i:27275738 original size:25 final size:26
Alignment explanation
Indices: 27275710--27275871 Score: 99
Period size: 25 Copynumber: 6.5 Consensus size: 26
27275700 GCTTTTATGT
27275710 GCTTCCCGATTA-ATGGCTCTCTAGA
1 GCTTCCCGATTATATGGCTCTCTAGA
* * *
27275735 GCTTCCCGA-TATTTGGCTCTATTGA
1 GCTTCCCGATTATATGGCTCTCTAGA
*
27275760 GCTTCCCG-TT-TATGGCTC-GTATGA
1 GCTTCCCGATTATATGGCTCTCTA-GA
** * * *
27275784 GCTTTTCGATAAT-TGGCTCGCAAGA
1 GCTTCCCGATTATATGGCTCTCTAGA
* * *
27275809 GCTTCCCGGTTATATGGCACAC-ATGA
1 GCTTCCCGATTATATGGCTCTCTA-GA
* **
27275835 GCTTCCC-ATTACATGGCT-TGAAAGA
1 GCTTCCCGATTATATGGCTCT-CTAGA
27275860 GCTTCCCGATTA
1 GCTTCCCGATTA
27275872 CATGCTTGTA
Statistics
Matches: 104, Mismatches: 22, Indels: 21
0.71 0.15 0.14
Matches are distributed among these distances:
23 1 0.01
24 17 0.16
25 64 0.62
26 22 0.21
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (26 bp):
GCTTCCCGATTATATGGCTCTCTAGA
Found at i:27276343 original size:17 final size:17
Alignment explanation
Indices: 27276321--27276363 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
27276311 TTATAGTAAC
27276321 TTGGAAGCTCATTAAGG
1 TTGGAAGCTCATTAAGG
*
27276338 TTGGAAGCTCGTTAAGG
1 TTGGAAGCTCATTAAGG
27276355 TTGGAAGCT
1 TTGGAAGCT
27276364 GGTCGAAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.26, C:0.12, G:0.33, T:0.30
Consensus pattern (17 bp):
TTGGAAGCTCATTAAGG
Found at i:27283160 original size:5 final size:5
Alignment explanation
Indices: 27283136--27283186 Score: 50
Period size: 5 Copynumber: 10.2 Consensus size: 5
27283126 TCTTTTGAAC
* * * *
27283136 TTTTA -TTTC TTTTA TGTTA TTTTA TGTTA TTTTA TGTTA TTTTA TTATTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT-TTA
27283186 T
1 T
27283187 AAAAACCCTT
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
4 3 0.08
5 29 0.81
6 4 0.11
ACGTcount: A:0.20, C:0.02, G:0.06, T:0.73
Consensus pattern (5 bp):
TTTTA
Found at i:27283160 original size:10 final size:10
Alignment explanation
Indices: 27283136--27283180 Score: 74
Period size: 10 Copynumber: 4.6 Consensus size: 10
27283126 TCTTTTGAAC
*
27283136 TTTTAT-TTC
1 TTTTATGTTA
27283145 TTTTATGTTA
1 TTTTATGTTA
27283155 TTTTATGTTA
1 TTTTATGTTA
27283165 TTTTATGTTA
1 TTTTATGTTA
27283175 TTTTAT
1 TTTTAT
27283181 TATTATAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
9 6 0.18
10 28 0.82
ACGTcount: A:0.18, C:0.02, G:0.07, T:0.73
Consensus pattern (10 bp):
TTTTATGTTA
Found at i:27285595 original size:33 final size:33
Alignment explanation
Indices: 27285558--27285665 Score: 146
Period size: 33 Copynumber: 3.2 Consensus size: 33
27285548 TATACTATTT
*
27285558 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
1 TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
*
27285591 TTGGTGTGATGGTTGGTTTAGCTCTTATGAGCA
1 TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
* * *
27285624 TTGGTGTGATGGATGGATTGGCTC-GAGTGAGCA
1 TTGGTGTGATGGTTGGATTAGCTCTTA-TGAGCA
27285657 TCTGGTGTG
1 T-TGGTGTG
27285666 TTTGATTGGT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
32 1 0.01
33 59 0.88
34 7 0.10
ACGTcount: A:0.15, C:0.09, G:0.37, T:0.39
Consensus pattern (33 bp):
TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
Found at i:27286261 original size:15 final size:15
Alignment explanation
Indices: 27286241--27286276 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
27286231 CATTTGGATT
* *
27286241 ATCATTGATACCATG
1 ATCATTGAGACCAGG
27286256 ATCATTGAGACCAGG
1 ATCATTGAGACCAGG
27286271 ATCATT
1 ATCATT
27286277 CCCTTCCCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (15 bp):
ATCATTGAGACCAGG
Found at i:27287590 original size:24 final size:23
Alignment explanation
Indices: 27287546--27287590 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
27287536 TGCTACCTTC
*
27287546 TATTTTTGCCTAAGGATTTTTTT
1 TATTTTTGCCTAAGGACTTTTTT
27287569 TATTGTTTGCCTAAAGG-CTTTT
1 TATT-TTTGCCT-AAGGACTTTT
27287591 ACAATCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 4 0.21
24 11 0.58
25 4 0.21
ACGTcount: A:0.18, C:0.11, G:0.16, T:0.56
Consensus pattern (23 bp):
TATTTTTGCCTAAGGACTTTTTT
Found at i:27289081 original size:47 final size:47
Alignment explanation
Indices: 27289027--27289139 Score: 135
Period size: 47 Copynumber: 2.4 Consensus size: 47
27289017 AATGTGGAAG
* * *
27289027 TTATTGGCAGTTTATCTGC-A-ATTGTTGTGGTTTGTCCACGATTTTGA
1 TTATTGGCAGTTTATCTACGATATTG--GTGGCTTGTCCACAATTTTGA
27289074 TTATTGGCA-TTATATCTACGATATTGGTGGCTTGTCCACAATTTTGA
1 TTATTGGCAGTT-TATCTACGATATTGGTGGCTTGTCCACAATTTTGA
27289121 TTATTGG-AGATTTATCTAC
1 TTATTGGCAG-TTTATCTAC
27289140 ATTACTGTAA
Statistics
Matches: 58, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
46 3 0.05
47 48 0.83
48 3 0.05
49 4 0.07
ACGTcount: A:0.21, C:0.13, G:0.20, T:0.45
Consensus pattern (47 bp):
TTATTGGCAGTTTATCTACGATATTGGTGGCTTGTCCACAATTTTGA
Found at i:27310599 original size:5 final size:5
Alignment explanation
Indices: 27310575--27310625 Score: 50
Period size: 5 Copynumber: 10.2 Consensus size: 5
27310565 TCTTTTGAAC
* * * *
27310575 TTTTA -TTTC TTTTA TGTTA TTTTA TGTTA TTTTA TGTTA TTTTA TTATTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT-TTA
27310625 T
1 T
27310626 AAAAACCCTT
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
4 3 0.08
5 29 0.81
6 4 0.11
ACGTcount: A:0.20, C:0.02, G:0.06, T:0.73
Consensus pattern (5 bp):
TTTTA
Found at i:27310599 original size:10 final size:10
Alignment explanation
Indices: 27310575--27310619 Score: 74
Period size: 10 Copynumber: 4.6 Consensus size: 10
27310565 TCTTTTGAAC
*
27310575 TTTTAT-TTC
1 TTTTATGTTA
27310584 TTTTATGTTA
1 TTTTATGTTA
27310594 TTTTATGTTA
1 TTTTATGTTA
27310604 TTTTATGTTA
1 TTTTATGTTA
27310614 TTTTAT
1 TTTTAT
27310620 TATTATAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
9 6 0.18
10 28 0.82
ACGTcount: A:0.18, C:0.02, G:0.07, T:0.73
Consensus pattern (10 bp):
TTTTATGTTA
Found at i:27313029 original size:33 final size:33
Alignment explanation
Indices: 27312992--27313099 Score: 146
Period size: 33 Copynumber: 3.2 Consensus size: 33
27312982 TATACTATTT
*
27312992 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
1 TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
*
27313025 TTGGTGTGATGGTTGGTTTAGCTCTTATGAGCA
1 TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
* * *
27313058 TTGGTGTGATGGATGGATTGGCTC-GAGTGAGCA
1 TTGGTGTGATGGTTGGATTAGCTCTTA-TGAGCA
27313091 TCTGGTGTG
1 T-TGGTGTG
27313100 TTTGATTGGT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
32 1 0.01
33 59 0.88
34 7 0.10
ACGTcount: A:0.15, C:0.09, G:0.37, T:0.39
Consensus pattern (33 bp):
TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
Found at i:27313695 original size:15 final size:15
Alignment explanation
Indices: 27313675--27313710 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
27313665 CATTTGGATT
* *
27313675 ATCATTGATACCATG
1 ATCATTGAGACCAGG
27313690 ATCATTGAGACCAGG
1 ATCATTGAGACCAGG
27313705 ATCATT
1 ATCATT
27313711 CCCTTCCCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (15 bp):
ATCATTGAGACCAGG
Found at i:27316517 original size:47 final size:47
Alignment explanation
Indices: 27316463--27316575 Score: 135
Period size: 47 Copynumber: 2.4 Consensus size: 47
27316453 AATGTGGAAG
* * *
27316463 TTATTGGCAGTTTATCTGC-A-ATTGTTGTGGTTTGTCCACGATTTTGA
1 TTATTGGCAGTTTATCTACGATATTG--GTGGCTTGTCCACAATTTTGA
27316510 TTATTGGCA-TTATATCTACGATATTGGTGGCTTGTCCACAATTTTGA
1 TTATTGGCAGTT-TATCTACGATATTGGTGGCTTGTCCACAATTTTGA
27316557 TTATTGG-AGATTTATCTAC
1 TTATTGGCAG-TTTATCTAC
27316576 ATTACTGTAA
Statistics
Matches: 58, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
46 3 0.05
47 48 0.83
48 3 0.05
49 4 0.07
ACGTcount: A:0.21, C:0.13, G:0.20, T:0.45
Consensus pattern (47 bp):
TTATTGGCAGTTTATCTACGATATTGGTGGCTTGTCCACAATTTTGA
Found at i:27324647 original size:26 final size:26
Alignment explanation
Indices: 27324588--27324649 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
27324578 TACCTACAGT
*
27324588 AGTTTCAAAATATCATAACATATATC
1 AGTTTCAGAATATCATAACATATATC
* *
27324614 AGTTTCAGAATATCATAGCATGTATC
1 AGTTTCAGAATATCATAACATATATC
27324640 AGTTTCAGAA
1 AGTTTCAGAA
27324650 CACTTACAGG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.34
Consensus pattern (26 bp):
AGTTTCAGAATATCATAACATATATC
Done.