Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 102 of 240
Found at i:31757527 original size:43 final size:43
Alignment explanation
Indices: 31757436--31757651 Score: 323
Period size: 43 Copynumber: 5.0 Consensus size: 43
31757426 AAAAAACGCT
* *
31757436 GCTAAAG-ACAATGCTCTTTAGCGGCG-TTTCTTTCTAAGCGCC
1 GCTAAAGAAC-ATGGTCTTTAGCGGCGTTTTTTTTCTAAGCGCC
*
31757478 GCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTTATAAGCGCC
1 GCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTTCTAAGCGCC
31757521 GCTAAAGAACATGGTCTTTAGCGGCG-TTTTTTTCTAAGCGCC
1 GCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTTCTAAGCGCC
31757563 GCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTT-TAAAGCGCC
1 GCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTTCT-AAGCGCC
* * *
31757606 GCTAAAGAACATGGTCTTTAGTGGCGTTTTTGTTTGTAAACGCC
1 GCTAAAGAACATGGTCTTTAGCGGCGTTTTT-TTTCTAAGCGCC
31757650 GC
1 GC
31757652 AAACATTTGC
Statistics
Matches: 162, Mismatches: 6, Indels: 10
0.91 0.03 0.06
Matches are distributed among these distances:
42 64 0.40
43 86 0.53
44 11 0.07
45 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.34
Consensus pattern (43 bp):
GCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTTCTAAGCGCC
Found at i:31757555 original size:85 final size:85
Alignment explanation
Indices: 31757436--31757636 Score: 343
Period size: 85 Copynumber: 2.4 Consensus size: 85
31757426 AAAAAACGCT
* *
31757436 GCTAAAG-ACAATGCTCTTTAGCGGCGTTTCTTTCTAAGCGCCGCTAAAGAACATGGTCTTTAGC
1 GCTAAAGAAC-ATGGTCTTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTTAGC
31757500 GGCG-TTTTTTTTATAAGCGCC
65 GGCGTTTTTTTTTA-AAGCGCC
31757521 GCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTTAGCG
1 GCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTTAGCG
31757586 GCGTTTTTTTTTAAAGCGCC
66 GCGTTTTTTTTTAAAGCGCC
*
31757606 GCTAAAGAACATGGTCTTTAGTGGCGTTTTT
1 GCTAAAGAACATGGTCTTTAGCGGCGTTTTT
31757637 GTTTGTAAAC
Statistics
Matches: 111, Mismatches: 3, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
85 100 0.90
86 11 0.10
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.34
Consensus pattern (85 bp):
GCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTTAGCG
GCGTTTTTTTTTAAAGCGCC
Found at i:31758851 original size:14 final size:15
Alignment explanation
Indices: 31758832--31758866 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
31758822 TTTAATTTTC
*
31758832 AAAATTTCAAAAA-A
1 AAAATTTAAAAAATA
31758846 AAAATTTAAAAAATA
1 AAAATTTAAAAAATA
31758861 AAAATT
1 AAAATT
31758867 ACTTTTTGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAATTTAAAAAATA
Found at i:31758925 original size:30 final size:30
Alignment explanation
Indices: 31758870--31758962 Score: 118
Period size: 30 Copynumber: 3.1 Consensus size: 30
31758860 AAAAATTACT
*
31758870 TTTTGACCCCTAAACTTT-TCCTAAATTTCA
1 TTTTGACCCCTAAACTTTCT-TTAAATTTCA
*
31758900 TTTTGACCCTTAAACTTTCTTTAAATTTCA
1 TTTTGACCCCTAAACTTTCTTTAAATTTCA
* * *
31758930 TTTAGACCCCT-AACATTCATTAAATTTCA
1 TTTTGACCCCTAAACTTTCTTTAAATTTCA
31758959 TTTT
1 TTTT
31758963 AATCCTAAAT
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
29 19 0.35
30 35 0.64
31 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.03, T:0.46
Consensus pattern (30 bp):
TTTTGACCCCTAAACTTTCTTTAAATTTCA
Found at i:31759350 original size:3 final size:3
Alignment explanation
Indices: 31759342--31759399 Score: 62
Period size: 3 Copynumber: 17.7 Consensus size: 3
31759332 GGTTTTGAAA
*
31759342 AAG AAG AAG AAGG AAG AAG AAG AAG AAG CAG AAAG AAAG AGAG AAG AAG
1 AAG AAG AAG AA-G AAG AAG AAG AAG AAG AAG -AAG -AAG A-AG AAG AAG
31759391 AAAG AAG AA
1 -AAG AAG AA
31759400 AAAAAAAAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
3 34 0.69
4 15 0.31
ACGTcount: A:0.66, C:0.02, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:31759359 original size:10 final size:10
Alignment explanation
Indices: 31759344--31759399 Score: 53
Period size: 10 Copynumber: 5.6 Consensus size: 10
31759334 TTTTGAAAAA
31759344 GAAGAAGAAG
1 GAAGAAGAAG
31759354 GAAGAAGAA-
1 GAAGAAGAAG
*
31759363 GAAGAAGCAG
1 GAAGAAGAAG
*
31759373 AAAGAA-AGAG
1 GAAGAAGA-AG
*
31759383 AGAAGAAGAAA
1 -GAAGAAGAAG
31759394 GAAGAA
1 GAAGAA
31759400 AAAAAAAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
9 8 0.22
10 22 0.59
11 6 0.16
12 1 0.03
ACGTcount: A:0.64, C:0.02, G:0.34, T:0.00
Consensus pattern (10 bp):
GAAGAAGAAG
Found at i:31759490 original size:18 final size:18
Alignment explanation
Indices: 31759453--31759495 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
31759443 AACCGGGTAT
* *
31759453 AACCCAACCCGATCCGGC
1 AACCCAACCCGACCCAGC
*
31759471 AACCCAACCTGACCCAGC
1 AACCCAACCCGACCCAGC
31759489 AAGCCCA
1 AA-CCCA
31759496 TTAGCCAAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.33, C:0.49, G:0.14, T:0.05
Consensus pattern (18 bp):
AACCCAACCCGACCCAGC
Found at i:31759711 original size:8 final size:8
Alignment explanation
Indices: 31759681--31759753 Score: 69
Period size: 8 Copynumber: 8.8 Consensus size: 8
31759671 CCCAGCAGAA
31759681 AAAAAAGG
1 AAAAAAGG
31759689 AAGAAAAAGAAG
1 -A-AAAAAG--G
31759701 AAAAAAGG
1 AAAAAAGG
31759709 AAAAAA-G
1 AAAAAAGG
*
31759716 AAAAAAAG
1 AAAAAAGG
31759724 AAAAAA-G
1 AAAAAAGG
*
31759731 AAAAAAAG
1 AAAAAAGG
31759739 AAAAAAGG
1 AAAAAAGG
31759747 AAGAAAA
1 AA-AAAA
31759754 AGGGGGTTCA
Statistics
Matches: 57, Mismatches: 1, Indels: 12
0.81 0.01 0.17
Matches are distributed among these distances:
7 14 0.25
8 24 0.42
9 5 0.09
10 12 0.21
11 1 0.02
12 1 0.02
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (8 bp):
AAAAAAGG
Found at i:31759718 original size:15 final size:15
Alignment explanation
Indices: 31759693--31759755 Score: 90
Period size: 15 Copynumber: 4.0 Consensus size: 15
31759683 AAAAGGAAGA
*
31759693 AAAAGAAGAAAAAAGG
1 AAAA-AAGAAAAAAAG
31759709 AAAAAAGAAAAAAAG
1 AAAAAAGAAAAAAAG
31759724 AAAAAAGAAAAAAAG
1 AAAAAAGAAAAAAAG
31759739 AAAAAAGGAAGAAAAAG
1 AAAAAA-GAA-AAAAAG
31759756 GGGGTTCAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
15 31 0.70
16 7 0.16
17 6 0.14
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (15 bp):
AAAAAAGAAAAAAAG
Found at i:31759719 original size:23 final size:23
Alignment explanation
Indices: 31759689--31759753 Score: 94
Period size: 23 Copynumber: 2.7 Consensus size: 23
31759679 AAAAAAAAGG
*
31759689 AAGAAAAAGAAGAAAAAAGGAAAA
1 AAGAAAAA-AAGAAAAAAGAAAAA
31759713 AAGAAAAAAAGAAAAAAGAAAAA
1 AAGAAAAAAAGAAAAAAGAAAAA
*
31759736 AAGAAAAAAGGAAGAAAA
1 AAGAAAAAAAGAA-AAAA
31759754 AGGGGGTTCA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
23 26 0.68
24 12 0.32
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (23 bp):
AAGAAAAAAAGAAAAAAGAAAAA
Found at i:31760465 original size:17 final size:17
Alignment explanation
Indices: 31760368--31760465 Score: 90
Period size: 17 Copynumber: 5.6 Consensus size: 17
31760358 CAAAAAATAA
* *
31760368 TTTCGTATTTCAAAAAT
1 TTTCGTGTTTTAAAAAT
**
31760385 TTTCGTGTTTCCAAAAT
1 TTTCGTGTTTTAAAAAT
31760402 TTTGCGTGTTTTAAAAAT
1 TTT-CGTGTTTTAAAAAT
**
31760420 CCTCGTGTTTTCAAAAA-
1 TTTCGTGTTTT-AAAAAT
*
31760437 TTTCAGTGTTTTGAAAAT
1 TTTC-GTGTTTTAAAAAT
*
31760455 TTTTGTGTTTT
1 TTTCGTGTTTT
31760466 TTTTTAAAAT
Statistics
Matches: 67, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
17 39 0.58
18 28 0.42
ACGTcount: A:0.26, C:0.11, G:0.13, T:0.50
Consensus pattern (17 bp):
TTTCGTGTTTTAAAAAT
Found at i:31760465 original size:35 final size:35
Alignment explanation
Indices: 31760366--31760465 Score: 105
Period size: 35 Copynumber: 2.9 Consensus size: 35
31760356 AACAAAAAAT
* * *
31760366 AATTT-CGTATTTCAAAAATTTTCGTGTTTCCAAA
1 AATTTGCGTGTTTTAAAAATTTTCGTGTTTTCAAA
* **
31760400 ATTTTGCGTGTTTTAAAAATCCTCGTGTTTTCAAA
1 AATTTGCGTGTTTTAAAAATTTTCGTGTTTTCAAA
* *
31760435 AATTT-CAGTGTTTTGAAAATTTTTGTGTTTT
1 AATTTGC-GTGTTTTAAAAATTTTCGTGTTTT
31760466 TTTTTAAAAT
Statistics
Matches: 53, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
34 5 0.09
35 48 0.91
ACGTcount: A:0.27, C:0.11, G:0.13, T:0.49
Consensus pattern (35 bp):
AATTTGCGTGTTTTAAAAATTTTCGTGTTTTCAAA
Found at i:31760586 original size:19 final size:18
Alignment explanation
Indices: 31760518--31760600 Score: 66
Period size: 18 Copynumber: 4.7 Consensus size: 18
31760508 AAATAATAAT
* *
31760518 TGTTTTCAAAAATCTTCG
1 TGTTTTCAAAAATTTTCA
*
31760536 TGTTTTC-AAGA-TTTCA
1 TGTTTTCAAAAATTTTCA
*
31760552 -GTGTTTCAAAATTTTTCA
1 TGT-TTTCAAAAATTTTCA
31760570 TGTTTTCAAAAAATTTTC-
1 TGTTTTC-AAAAATTTTCA
*
31760588 TCGTGTTCAAAAA
1 T-GTTTTCAAAAA
31760601 AAAATTTTTC
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
15 2 0.04
16 7 0.13
17 5 0.10
18 22 0.42
19 16 0.31
ACGTcount: A:0.30, C:0.13, G:0.11, T:0.46
Consensus pattern (18 bp):
TGTTTTCAAAAATTTTCA
Found at i:31760656 original size:17 final size:17
Alignment explanation
Indices: 31760630--31760901 Score: 142
Period size: 17 Copynumber: 15.5 Consensus size: 17
31760620 TTTTTAAAAA
*
31760630 AAAAACTTTCGTGTTTC
1 AAAAATTTTCGTGTTTC
31760647 AAAAATTTTCACGT-TTTC
1 AAAAATTTT--CGTGTTTC
** * *
31760665 AAAAATTCCCATG-ATC
1 AAAAATTTTCGTGTTTC
*
31760681 AAAAAAAAATTT-GTGTTTTC
1 ---AAAAATTTTCGTG-TTTC
*
31760701 AAAAAATTTTCATGTTTC
1 -AAAAATTTTCGTGTTTC
31760719 AAAAATTTTCGTGTTTTC
1 AAAAATTTTCGTG-TTTC
31760737 AAAAATTTTCGTGTTTTC
1 AAAAATTTTCGTG-TTTC
* * *
31760755 AACAATTCTCATGTTTC
1 AAAAATTTTCGTGTTTC
** * *
31760772 ACGAATTTTCGCGCTTC
1 AAAAATTTTCGTGTTTC
**
31760789 AAAAA-AATCAG-GTTTTC
1 AAAAATTTTC-GTG-TTTC
** *
31760806 AAAAAAATTCGCGTATTTC
1 --AAAAATTTTCGTGTTTC
*
31760825 -AAAATTGTCGTGTTCTC
1 AAAAATTTTCGTGTT-TC
*
31760842 AAAAATTTTCGTGTTTT
1 AAAAATTTTCGTGTTTC
* *
31760859 AAGAATTTTCGTGTCTC
1 AAAAATTTTCGTGTTTC
* * *
31760876 TAAAATTCTCGTGTTTT
1 AAAAATTTTCGTGTTTC
31760893 AAAAATTTT
1 AAAAATTTT
31760902 TCTTGTCTAA
Statistics
Matches: 191, Mismatches: 46, Indels: 36
0.70 0.17 0.13
Matches are distributed among these distances:
16 18 0.09
17 78 0.41
18 71 0.37
19 21 0.11
20 3 0.02
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.42
Consensus pattern (17 bp):
AAAAATTTTCGTGTTTC
Found at i:31760704 original size:18 final size:19
Alignment explanation
Indices: 31760683--31760903 Score: 113
Period size: 18 Copynumber: 12.6 Consensus size: 19
31760673 CCATGATCAA
*
31760683 AAAAAAATTT-GTGTTTTC
1 AAAAAATTTTCGTGTTTTC
*
31760701 AAAAAATTTTCATG-TTTC
1 AAAAAATTTTCGTGTTTTC
31760719 -AAAAATTTTCGTGTTTTC
1 AAAAAATTTTCGTGTTTTC
31760737 -AAAAATTTTCGTGTTTTC
1 AAAAAATTTTCGTGTTTTC
* * *
31760755 -AACAATTCTCATG-TTTC
1 AAAAAATTTTCGTGTTTTC
** * *
31760772 -ACGAATTTTCGCG-CTTC
1 AAAAAATTTTCGTGTTTTC
*
31760789 AAAAAA--ATCAG-GTTTTC
1 AAAAAATTTTC-GTGTTTTC
* *
31760806 AAAAAA-ATTCGCGTATTTC
1 AAAAAATTTTCGTGT-TTTC
* *
31760825 --AAAATTGTCGTGTTCTC
1 AAAAAATTTTCGTGTTTTC
31760842 -AAAAATTTTCGTGTTTT-
1 AAAAAATTTTCGTGTTTTC
* *
31760859 -AAGAATTTTCGTG-TCTC
1 AAAAAATTTTCGTGTTTTC
* *
31760876 -TAAAATTCTCGTGTTTT-
1 AAAAAATTTTCGTGTTTTC
*
31760893 AAAAATTTTTC
1 AAAAAATTTTC
31760904 TTGTCTAAAA
Statistics
Matches: 158, Mismatches: 32, Indels: 26
0.73 0.15 0.12
Matches are distributed among these distances:
16 5 0.03
17 67 0.42
18 80 0.51
19 6 0.04
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.43
Consensus pattern (19 bp):
AAAAAATTTTCGTGTTTTC
Found at i:31760755 original size:36 final size:36
Alignment explanation
Indices: 31760630--31760901 Score: 161
Period size: 35 Copynumber: 7.8 Consensus size: 36
31760620 TTTTTAAAAA
* **
31760630 AAAAACTTTCGTG-TTTCAAAAATTTTCACGTTTTC
1 AAAAATTTTCGTGTTTTCAAAAATTTTCGTGTTTTC
** * **** *
31760665 AAAAATTCCCATGATCAAAAAAAAATTT-GTGTTTTC
1 AAAAATTTTCGTG-TTTTCAAAAATTTTCGTGTTTTC
*
31760701 AAAAAATTTTCATG-TTTCAAAAATTTTCGTGTTTTC
1 -AAAAATTTTCGTGTTTTCAAAAATTTTCGTGTTTTC
* * *
31760737 AAAAATTTTCGTGTTTTCAACAATTCTCATG-TTTC
1 AAAAATTTTCGTGTTTTCAAAAATTTTCGTGTTTTC
** * * **
31760772 ACGAATTTTCGCG-CTTCAAAAA-AATCAG-GTTTTC
1 AAAAATTTTCGTGTTTTCAAAAATTTTC-GTGTTTTC
** * * *
31760806 AAAAAAATTCGCGTATTTC-AAAATTGTCGTGTTCTC
1 AAAAATTTTCGTGT-TTTCAAAAATTTTCGTGTTTTC
* *
31760842 AAAAATTTTCGTGTTTT-AAGAATTTTCGTG-TCTC
1 AAAAATTTTCGTGTTTTCAAAAATTTTCGTGTTTTC
* *
31760876 TAAAATTCTCGTGTTTT-AAAAATTTT
1 AAAAATTTTCGTGTTTTCAAAAATTTT
31760902 TCTTGTCTAA
Statistics
Matches: 179, Mismatches: 46, Indels: 25
0.72 0.18 0.10
Matches are distributed among these distances:
33 3 0.02
34 47 0.26
35 61 0.34
36 49 0.27
37 19 0.11
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.42
Consensus pattern (36 bp):
AAAAATTTTCGTGTTTTCAAAAATTTTCGTGTTTTC
Found at i:31760915 original size:34 final size:34
Alignment explanation
Indices: 31760808--31760915 Score: 112
Period size: 34 Copynumber: 3.2 Consensus size: 34
31760798 AGGTTTTCAA
* * * *
31760808 AAAAATTCGCGT-ATTTCAAAATTGTCGTGTTCTC
1 AAAAATTCTCGTGTTTTAAAAATTTTCGTG-TCTC
* *
31760842 AAAAATTTTCGTGTTTTAAGAATTTTCGTGTCTC
1 AAAAATTCTCGTGTTTTAAAAATTTTCGTGTCTC
* *
31760876 TAAAATTCTCGTGTTTTAAAAATTTTTCTTGTCT-
1 AAAAATTCTCGTGTTTTAAAAA-TTTTCGTGTCTC
31760910 AAAAAT
1 AAAAAT
31760916 AAAAATAAAA
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
34 38 0.62
35 23 0.38
ACGTcount: A:0.31, C:0.13, G:0.12, T:0.44
Consensus pattern (34 bp):
AAAAATTCTCGTGTTTTAAAAATTTTCGTGTCTC
Found at i:31761008 original size:17 final size:16
Alignment explanation
Indices: 31760943--31761040 Score: 54
Period size: 17 Copynumber: 5.8 Consensus size: 16
31760933 CAAAAAATGT
* *
31760943 TCGTGTTTTAAATTTT
1 TCGTGTTTTAAAATTC
*
31760959 TTGTGTTTTGAATAAATTTC
1 TCGTGTTTT--A-AAA-TTC
* * *
31760979 TCGTGCTTCAAAAGTTG
1 TCGTGTTTTAAAA-TTC
*
31760996 TCGTGTTTTAAAAATTT
1 TCGTGTTTT-AAAATTC
*
31761013 TCATGTTTCTAAAATTC
1 TCGTGTTT-TAAAATTC
31761030 TCGT-TTTTAAA
1 TCGTGTTTTAAA
31761041 GAAATTGTGT
Statistics
Matches: 62, Mismatches: 14, Indels: 13
0.70 0.16 0.15
Matches are distributed among these distances:
15 4 0.06
16 11 0.18
17 30 0.48
18 7 0.11
19 2 0.03
20 8 0.13
ACGTcount: A:0.26, C:0.10, G:0.13, T:0.51
Consensus pattern (16 bp):
TCGTGTTTTAAAATTC
Found at i:31787782 original size:21 final size:21
Alignment explanation
Indices: 31787772--31787817 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
31787762 GTCTTTCTTC
31787772 TTTCTTTCCTTCCGTTTTTCT
1 TTTCTTTCCTTCCGTTTTTCT
* *
31787793 TTTCTTTCCTTTCTGATTTTCT
1 TTTCTTTCC-TTCCGTTTTTCT
31787815 TTT
1 TTT
31787818 TTCATTTGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.02, C:0.24, G:0.04, T:0.70
Consensus pattern (21 bp):
TTTCTTTCCTTCCGTTTTTCT
Found at i:31787852 original size:18 final size:20
Alignment explanation
Indices: 31787810--31787855 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 20
31787800 CCTTTCTGAT
31787810 TTTCTTT-TTTCATTTGTTC
1 TTTCTTTATTTCATTTGTTC
31787829 -TT-TTTATTTC-TTT-TTC
1 TTTCTTTATTTCATTTGTTC
31787845 TTTCTTTATTT
1 TTTCTTTATTT
31787856 GTTATTATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
16 3 0.12
17 8 0.33
18 13 0.54
ACGTcount: A:0.07, C:0.13, G:0.02, T:0.78
Consensus pattern (20 bp):
TTTCTTTATTTCATTTGTTC
Found at i:31790879 original size:19 final size:19
Alignment explanation
Indices: 31790857--31790899 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
31790847 TATTTTTTAT
*
31790857 ATTTTGAATAATTTAAATA
1 ATTTTGAATAATTAAAATA
* *
31790876 ATTTTTAATTATTAAAATA
1 ATTTTGAATAATTAAAATA
*
31790895 GTTTT
1 ATTTT
31790900 TTTATAAATG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (19 bp):
ATTTTGAATAATTAAAATA
Found at i:31795924 original size:11 final size:11
Alignment explanation
Indices: 31795906--31795948 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
31795896 CAATCACATT
31795906 TAATTTTTATA
1 TAATTTTTATA
* *
31795917 TCATTTTTTTA
1 TAATTTTTATA
31795928 TAAATTTATTATA
1 T-AATTT-TTATA
31795941 TAATTTTT
1 TAATTTTT
31795949 TTCTCACATC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 12 0.46
12 9 0.35
13 5 0.19
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (11 bp):
TAATTTTTATA
Found at i:31797195 original size:29 final size:30
Alignment explanation
Indices: 31797145--31797237 Score: 122
Period size: 30 Copynumber: 3.2 Consensus size: 30
31797135 AATAAAAATG
31797145 CATTTTGACCCCTAAACTTTTC-TTAAATTT
1 CATTTTGACCCCTAAAC-TTTCATTAAATTT
* *
31797175 CATTTTGACCCTTAAACTTTCTTTAAATTT
1 CATTTTGACCCCTAAACTTTCATTAAATTT
*
31797205 CA-TTAGACCCCT-AAC-TTCATTAAATTT
1 CATTTTGACCCCTAAACTTTCATTAAATTT
31797232 CATTTT
1 CATTTT
31797238 AATCCTAAAT
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
27 13 0.23
28 5 0.09
29 12 0.21
30 26 0.46
ACGTcount: A:0.28, C:0.23, G:0.03, T:0.46
Consensus pattern (30 bp):
CATTTTGACCCCTAAACTTTCATTAAATTT
Found at i:31797484 original size:17 final size:17
Alignment explanation
Indices: 31797457--31797501 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
31797447 CCCACGAATC
**
31797457 CAAAA-AAAAAAAGTTT
1 CAAAAGAAAAAAAGTAA
31797473 CAAAAGAAAAAAAGTAA
1 CAAAAGAAAAAAAGTAA
*
31797490 AAAAAGAAAAAA
1 CAAAAGAAAAAA
31797502 GGGAGAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
16 5 0.20
17 20 0.80
ACGTcount: A:0.78, C:0.04, G:0.09, T:0.09
Consensus pattern (17 bp):
CAAAAGAAAAAAAGTAA
Found at i:31797598 original size:3 final size:3
Alignment explanation
Indices: 31797590--31797642 Score: 63
Period size: 3 Copynumber: 17.0 Consensus size: 3
31797580 GGCTAGCTTT
31797590 GAA GAA GAA GAA GGAA GAA GAA GAA GAA G-A GAAA GAAA GAA GAA GAA
1 GAA GAA GAA GAA -GAA GAA GAA GAA GAA GAA G-AA G-AA GAA GAA GAA
*
31797637 AAA GAA
1 GAA GAA
31797643 AAAAAAAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
2 2 0.04
3 34 0.76
4 9 0.20
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:31797614 original size:19 final size:19
Alignment explanation
Indices: 31797591--31797636 Score: 71
Period size: 16 Copynumber: 2.6 Consensus size: 19
31797581 GCTAGCTTTG
31797591 AAGAAGAAGAAG-G-AAG-
1 AAGAAGAAGAAGAGAAAGA
31797607 AAGAAGAAGAAGAGAAAGA
1 AAGAAGAAGAAGAGAAAGA
31797626 AAGAAGAAGAA
1 AAGAAGAAGAA
31797637 AAAGAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 12 0.44
17 1 0.04
18 3 0.11
19 11 0.41
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (19 bp):
AAGAAGAAGAAGAGAAAGA
Found at i:31797640 original size:16 final size:16
Alignment explanation
Indices: 31797594--31797643 Score: 66
Period size: 16 Copynumber: 3.1 Consensus size: 16
31797584 AGCTTTGAAG
*
31797594 AAGAAGAAGGAAGAAG-
1 AAGAAGAA-GAAAAAGA
*
31797610 AAGAAGAAGAGAAAGA
1 AAGAAGAAGAAAAAGA
31797626 AAGAAGAAGAAAAAGA
1 AAGAAGAAGAAAAAGA
31797642 AA
1 AA
31797644 AAAAAAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
15 5 0.17
16 25 0.83
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (16 bp):
AAGAAGAAGAAAAAGA
Found at i:31797748 original size:12 final size:12
Alignment explanation
Indices: 31797731--31797760 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
31797721 GCAGCCCAAG
*
31797731 AAAAAACAACAA
1 AAAAAAAAACAA
31797743 AAAAAAAAACAA
1 AAAAAAAAACAA
31797755 AAAAAA
1 AAAAAA
31797761 GAAAAAGCCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAAAACAA
Found at i:31797751 original size:15 final size:15
Alignment explanation
Indices: 31797731--31797779 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
31797721 GCAGCCCAAG
31797731 AAAAAACAACAAAAA
1 AAAAAACAACAAAAA
31797746 AAAAAACAA-AAAAA
1 AAAAAACAACAAAAA
*
31797760 AGAAAAAGC-CCAAAAA
1 A-AAAAA-CAACAAAAA
31797776 AAAA
1 AAAA
31797780 GAGCGCAGGC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
14 6 0.20
15 17 0.57
16 7 0.23
ACGTcount: A:0.84, C:0.12, G:0.04, T:0.00
Consensus pattern (15 bp):
AAAAAACAACAAAAA
Found at i:31797912 original size:11 final size:11
Alignment explanation
Indices: 31797896--31797954 Score: 64
Period size: 11 Copynumber: 5.1 Consensus size: 11
31797886 TTGGCCCAGC
31797896 AGAAAAAAAAA
1 AGAAAAAAAAA
*
31797907 AGAAAAGAAAA
1 AGAAAAAAAAA
* *
31797918 AGAAGAAAAAG
1 AGAAAAAAAAA
31797929 AGAAGAAAAAAGA
1 AGAA-AAAAAA-A
31797942 AGAAAAAAGAAA
1 AGAAAAAA-AAA
31797954 A
1 A
31797955 AAGAGGTTCA
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
11 22 0.56
12 11 0.28
13 6 0.15
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (11 bp):
AGAAAAAAAAA
Found at i:31797923 original size:9 final size:10
Alignment explanation
Indices: 31797902--31797956 Score: 76
Period size: 10 Copynumber: 5.4 Consensus size: 10
31797892 CAGCAGAAAA
*
31797902 AAAAAAGAAA
1 AAAAAAGAAG
31797912 AGAAAAAGAAG
1 A-AAAAAGAAG
31797923 AAAAAGAGAAG
1 AAAAA-AGAAG
31797934 AAAAAAGAAG
1 AAAAAAGAAG
31797944 AAAAAAGAA-
1 AAAAAAGAAG
31797953 AAAA
1 AAAA
31797957 GAGGTTCAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
9 4 0.10
10 19 0.45
11 19 0.45
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (10 bp):
AAAAAAGAAG
Found at i:31797926 original size:22 final size:21
Alignment explanation
Indices: 31797896--31797956 Score: 79
Period size: 22 Copynumber: 2.9 Consensus size: 21
31797886 TTGGCCCAGC
*
31797896 AGAAAAAAAAAAGAAAAGAAAA
1 AGAAGAAAAAAAGAAAA-AAAA
* *
31797918 AGAAGAAAAAGAGAAGAAAAA
1 AGAAGAAAAAAAGAAAAAAAA
31797939 AGAAG-AAAAAAGAAAAAA
1 AGAAGAAAAAAAGAAAAAA
31797957 GAGGTTCAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
20 11 0.32
21 9 0.26
22 14 0.41
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (21 bp):
AGAAGAAAAAAAGAAAAAAAA
Found at i:31798123 original size:17 final size:17
Alignment explanation
Indices: 31798090--31798138 Score: 73
Period size: 17 Copynumber: 2.8 Consensus size: 17
31798080 TTTATGCATT
31798090 TTTATATTTATATTTTTAA
1 TTTA-ATTTA-ATTTTTAA
31798109 TTTAATTTAATTTTTAA
1 TTTAATTTAATTTTTAA
31798126 TTTAATTT-ATTTT
1 TTTAATTTAATTTT
31798139 AAATAATTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
16 5 0.17
17 16 0.53
18 5 0.17
19 4 0.13
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTAATTTAATTTTTAA
Found at i:31798124 original size:12 final size:12
Alignment explanation
Indices: 31798109--31798133 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
31798099 ATATTTTTAA
31798109 TTTAATTTAATT
1 TTTAATTTAATT
31798121 TTTAATTTAATT
1 TTTAATTTAATT
31798133 T
1 T
31798134 ATTTTAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTAATTTAATT
Found at i:31798328 original size:20 final size:20
Alignment explanation
Indices: 31798299--31798338 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
31798289 CTCGGGTTTG
*
31798299 AAATTTTCGTGTCTTCAAAA
1 AAATTCTCGTGTCTTCAAAA
*
31798319 AAATTCTCGTGTTTTCAAAA
1 AAATTCTCGTGTCTTCAAAA
31798339 TAAGTAACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (20 bp):
AAATTCTCGTGTCTTCAAAA
Found at i:31798510 original size:18 final size:18
Alignment explanation
Indices: 31798449--31798829 Score: 179
Period size: 17 Copynumber: 22.0 Consensus size: 18
31798439 AGAAAATTTT
31798449 TCGTGTTTTCAAAAATTC
1 TCGTGTTTTCAAAAATTC
* *
31798467 -CGTG-TTGCAAAAATTT
1 TCGTGTTTTCAAAAATTC
*
31798483 TCATGTTTTTCAAAAATTC
1 TCGTG-TTTTCAAAAATTC
*
31798502 TCGTGTTTTAAAAAAATTC
1 TCGTGTTTT-CAAAAATTC
** *
31798521 -C-AATTTTC-AAAATTT
1 TCGTGTTTTCAAAAATTC
31798536 TCGTGTTTTCTAAAAACTTC
1 TCGTGTTTTC-AAAAA-TTC
*
31798556 T-GTG-TTTCAAAAATTT
1 TCGTGTTTTCAAAAATTC
* *
31798572 TCGTG-TTTCTAAAATTT
1 TCGTGTTTTCAAAAATTC
* *
31798589 TCGT-ATTTCAAAAATTT
1 TCGTGTTTTCAAAAATTC
* ** *
31798606 TCTTGTTTTC-AAGTTTT
1 TCGTGTTTTCAAAAATTC
* * *
31798623 TCGT-ATTTAAAAAATCC
1 TCGTGTTTTCAAAAATTC
31798640 TCGTGTTTTC-AAAATTC
1 TCGTGTTTTCAAAAATTC
* *
31798657 -CGTG-TTTCAAAATTTT
1 TCGTGTTTTCAAAAATTC
31798673 TCGTG-TTTCAAAAAAAATTC
1 TCGTGTTTTC---AAAAATTC
*
31798693 -C-CGTTTTCAAAAACTT-
1 TCGTGTTTTCAAAAA-TTC
31798709 TCGTGTTTT-AAGAAATTGAC
1 TCGTGTTTTCAA-AAATT--C
* *
31798729 -CGTG-TTTCATAAATTT
1 TCGTGTTTTCAAAAATTC
*
31798745 TCGTG-TTTCAAAGAAATC
1 TCGTGTTTTCAAA-AATTC
31798763 TCGTG-TTTC-AAAATT-
1 TCGTGTTTTCAAAAATTC
*
31798778 TCGTGTTTTTTAAAAATT-
1 TCGTG-TTTTCAAAAATTC
*
31798796 T-GTG-TTTCTAAAATTC
1 TCGTGTTTTCAAAAATTC
* * *
31798812 TTGTATTTTAAAAAATTC
1 TCGTGTTTTCAAAAATTC
31798830 GTGTTTAAAA
Statistics
Matches: 278, Mismatches: 49, Indels: 72
0.70 0.12 0.18
Matches are distributed among these distances:
15 24 0.09
16 35 0.13
17 109 0.39
18 62 0.22
19 39 0.14
20 9 0.03
ACGTcount: A:0.30, C:0.13, G:0.11, T:0.46
Consensus pattern (18 bp):
TCGTGTTTTCAAAAATTC
Found at i:31798821 original size:32 final size:33
Alignment explanation
Indices: 31798650--31798840 Score: 110
Period size: 36 Copynumber: 5.5 Consensus size: 33
31798640 TCGTGTTTTC
**
31798650 AAAATTCCGTGTTTCAAAATTTTTCGTGT-TTCAAAA
1 AAAATT-CGTGTTTCAAAA--TTTCGTGTATT-TTAA
31798686 AAAATTCCCGT-TTTCAAAAACTTTCGTG--TTTTAA
1 AAAATT--CGTGTTTC-AAAA-TTTCGTGTATTTTAA
* *
31798720 GAAATTGACCGTGTTTCATAAATTTTCGTG--TTTCAA
1 AAAATT---CGTGTTTCA-AAA-TTTCGTGTATTTTAA
*
31798756 AGAAATCTCGTGTTTCAAAATTTCGTGT-TTTTTA
1 A-AAAT-TCGTGTTTCAAAATTTCGTGTATTTTAA
* *
31798790 AAAATTTGTGTTTCTAAAA-TTCTTGTATTTTAA
1 AAAATTCGTGTTTC-AAAATTTCGTGTATTTTAA
*
31798823 AAAATTCGTGTTTAAAAA
1 AAAATTCGTGTTTCAAAA
31798841 AAAAGGAAAA
Statistics
Matches: 130, Mismatches: 15, Indels: 24
0.77 0.09 0.14
Matches are distributed among these distances:
32 18 0.14
33 32 0.25
34 15 0.12
35 16 0.12
36 36 0.28
37 12 0.09
38 1 0.01
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.43
Consensus pattern (33 bp):
AAAATTCGTGTTTCAAAATTTCGTGTATTTTAA
Found at i:31798838 original size:15 final size:15
Alignment explanation
Indices: 31798744--31798841 Score: 61
Period size: 15 Copynumber: 6.0 Consensus size: 15
31798734 TTCATAAATT
31798744 TTCGTGTTTCAAAGAAA
1 TTCGTGTTT-AAA-AAA
* *
31798761 TCTCGTGTTTCAAAAT
1 T-TCGTGTTTAAAAAA
*
31798777 TTCGTGTTTTTTAAAAA
1 TTCGTG--TTTAAAAAA
* **
31798794 TTTGTGTTTCTAAAA
1 TTCGTGTTTAAAAAA
*
31798809 TTCTTGTATTTTAAAAAA
1 TTC--GT-GTTTAAAAAA
31798827 TTCGTGTTTAAAAAA
1 TTCGTGTTTAAAAAA
31798842 AAAGGAAAAA
Statistics
Matches: 63, Mismatches: 12, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
15 23 0.37
16 5 0.08
17 17 0.27
18 18 0.29
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (15 bp):
TTCGTGTTTAAAAAA
Found at i:31807713 original size:54 final size:54
Alignment explanation
Indices: 31807649--31807854 Score: 160
Period size: 54 Copynumber: 3.5 Consensus size: 54
31807639 TTTTAAATTG
31807649 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
** * *** ***
31807703 ACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTAA
1 ACTCATATTGCGAGAGGTGAGTTAAGCCT---------TTTA---ATTTTT-GTTT-T-TCAAAA
**
31807768 ATTG
51 ATCA
31807772 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
* *
31807826 ACTCATATTGCAAGAGGTGAGTTGAGCCT
1 ACTCATATTGCGAGAGGTGAGTTAAGCCT
31807855 CGGCTCACAT
Statistics
Matches: 113, Mismatches: 24, Indels: 30
0.68 0.14 0.18
Matches are distributed among these distances:
54 58 0.51
55 1 0.01
56 4 0.04
57 6 0.05
60 1 0.01
63 1 0.01
66 6 0.05
67 4 0.04
68 1 0.01
69 31 0.27
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (54 bp):
ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
Found at i:31807716 original size:123 final size:123
Alignment explanation
Indices: 31807572--31807857 Score: 545
Period size: 123 Copynumber: 2.3 Consensus size: 123
31807562 ATTTTTTTAA
31807572 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
31807637 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
66 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
*
31807695 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
31807760 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
66 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
* *
31807818 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGG
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGG
31807858 CTCACATGCT
Statistics
Matches: 159, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 159 1.00
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (123 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
Found at i:31807754 original size:194 final size:194
Alignment explanation
Indices: 31806925--31807732 Score: 1543
Period size: 194 Copynumber: 4.2 Consensus size: 194
31806915 ATTGCTTTCT
*
31806925 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATACGTTGAGGTATTTTTAAATTTTTT
1 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTT
31806990 TAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
66 TAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
*
31807055 TTTATGTTTTAAATTGACTCATATTGCGAGATGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
131 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
31807119 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAA-TTTTT
1 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTT
*
31807183 T--AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGGGCACGCCGAGGTATTTTTAG
66 TAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
31807246 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
131 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
31807310 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTT
1 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTT
31807375 TAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
66 TAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
*
31807440 TTTATGTTTTAAATTGACTCATATTGCGAAAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
131 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
31807504 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTT
1 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTT
31807569 T-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
66 TAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
31807633 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAA
131 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC-AA
31807698 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
1 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
31807733 GGGGCACGCC
Statistics
Matches: 604, Mismatches: 6, Indels: 8
0.98 0.01 0.01
Matches are distributed among these distances:
191 183 0.30
192 6 0.01
193 130 0.22
194 285 0.47
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.36
Consensus pattern (194 bp):
AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTT
TAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
Found at i:31807778 original size:385 final size:382
Alignment explanation
Indices: 31806925--31807800 Score: 1504
Period size: 385 Copynumber: 2.3 Consensus size: 382
31806915 ATTGCTTTCT
*
31806925 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATACGTTGAGGTATTTTTAAATTTTTT
1 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTT
31806990 TAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
66 T---AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
* *
31807055 TTTATGTTTTAAATTGACTCATATTGCGAGATGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAA
128 TTTATGTTTTAAATTGACTCATATTGCGAAAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAA
31807120 ATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTA
193 ATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTA
*
31807185 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGGGCACGCCGAGGTATTTTTAGTTTA
258 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
31807250 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
323 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
31807310 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTT
1 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTT
31807375 TAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
66 T---AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
31807440 TTTATGTTTTAAATTGACTCATATTGCGAAAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAA
128 TTTATGTTTTAAATTGACTCATATTGCGAAAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAA
31807505 ATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTT
193 ATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAA-TTTTTT
31807570 AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTT
257 -AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTT
31807635 TATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAA
321 TATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC-AA
** * ** *
31807698 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT-AGTTTATG
1 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTT-T-
* ** * *
31807762 TTT-TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
64 TTTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
31807801 TTTAATTTTT
Statistics
Matches: 471, Mismatches: 15, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
385 281 0.60
386 6 0.01
387 127 0.27
388 54 0.11
389 3 0.01
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (382 bp):
AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTT
TAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTT
ATGTTTTAAATTGACTCATATTGCGAAAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATC
AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTAAAA
AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGT
TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
Found at i:31808018 original size:85 final size:87
Alignment explanation
Indices: 31807819--31808062 Score: 255
Period size: 91 Copynumber: 2.8 Consensus size: 87
31807809 TTGTTTTTCA
*
31807819 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGGGGTATTTTCAATT
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGC-CAC--GCTGAGGTATTTTCAATT
* ** **
31807883 TATATTTTTTTCAATCTATGCTTCTC
63 TCTGCTTTACTCAATCTA-GCTTCTC
* *
31807909 AAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CACGCTGAGGTATTTTCAATTT
1 -AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-AGGCCACGCTGAGGTATTTTCAATTT
*
31807973 CTGCTTTACT-AATTCTA-CTTTTC
64 CTGCTTTACTCAA-TCTAGCTTCTC
* * * *
31807996 -AAATCAACTCATATTGTAAGAGGTGAGTTGAGTCTCAGGCCACACGCTGAGGTCTTTTCAAATT
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGG-C-CACGCTGAGGTATTTTCAATTT
31808060 CTG
64 CTG
31808063 TTTTTAATTT
Statistics
Matches: 132, Mismatches: 15, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
84 3 0.02
85 32 0.24
87 28 0.21
88 2 0.02
89 27 0.20
91 38 0.29
93 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (87 bp):
AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCCACGCTGAGGTATTTTCAATTTCT
GCTTTACTCAATCTAGCTTCTC
Found at i:31808071 original size:85 final size:87
Alignment explanation
Indices: 31807819--31808071 Score: 268
Period size: 85 Copynumber: 2.9 Consensus size: 87
31807809 TTGTTTTTCA
* *
31807819 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGGGGTATTTTCAATT
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGC-CACACGCTGAGGTATTTTCAA-T
* *
31807883 TATATTTTTTTCAA-TCTATGCTTCTC
64 T-TCTGTTTTT-AATTCTA-GCTTCTC
* *
31807909 AAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAGG---CACGCTGAGGTATTTTCAAT
1 -AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-AGGCCACACGCTGAGGTATTTTCAAT
* *
31807971 TTCTGCTTTACTAATTCTA-CTTTTC
64 TTCTG-TTT-TTAATTCTAGCTTCTC
* * * *
31807996 -AAATCAACTCATATTGTAAGAGGTGAGTTGAGTCTCAGGCCACACGCTGAGGTCTTTTCAAATT
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCCACACGCTGAGGTATTTTCAATTT
31808060 CTGTTTTTAATT
66 CTGTTTTTAATT
31808072 TATGTTTTTT
Statistics
Matches: 139, Mismatches: 15, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
84 3 0.02
85 37 0.27
86 3 0.02
87 30 0.22
88 7 0.05
89 22 0.16
91 35 0.25
93 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (87 bp):
AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCCACACGCTGAGGTATTTTCAATTT
CTGTTTTTAATTCTAGCTTCTC
Found at i:31808317 original size:30 final size:30
Alignment explanation
Indices: 31808281--31808342 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
31808271 CAACTCATAT
31808281 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
31808311 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
31808341 TG
1 TG
31808343 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:31808495 original size:88 final size:88
Alignment explanation
Indices: 31808345--31808559 Score: 224
Period size: 88 Copynumber: 2.5 Consensus size: 88
31808335 AATTTCTGTT
* *
31808345 TTTC-AAAAATCAACTCATATTGCGA-AAGGTGAGTTGAACCTTCAGTCACATATCGAGGTATTT
1 TTTCAAAAAATCAACTCATATTGCGAGAA-GTGAGTTGAGCCTTCAGTCACATATCGAGCTATTT
* *
31808408 TCAAAATCTGCTTTTCATGT-TAAG
65 TCAAAATCTACTTTTAATGTCT-AG
* * *
31808432 TTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTT-GGCTCACGT-GCTGAGCTATT
1 TTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTCAG-TCACATATC-GAGCTATT
** *
31808495 TTCAATTTCTATTTTTAATGTCTAG
64 TTCAAAATCTACTTTTAATGTCTAG
* * * * *
31808520 TTTTAAAGAGTCAATTCATATTGCGAGAAATGAGTTGAGC
1 TTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
31808560 TCAGGATCAC
Statistics
Matches: 108, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
87 6 0.06
88 99 0.92
89 3 0.03
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (88 bp):
TTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTCAGTCACATATCGAGCTATTTT
CAAAATCTACTTTTAATGTCTAG
Found at i:31808778 original size:30 final size:30
Alignment explanation
Indices: 31808744--31808845 Score: 143
Period size: 30 Copynumber: 3.4 Consensus size: 30
31808734 AAAAAAATAA
*
31808744 AAATTGCATTTTGACCCCTAAACTTTTC-TT
1 AAATTTCATTTTGACCCCTAAAC-TTTCATT
* *
31808774 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTCATT
* *
31808804 AAATTTCATTTAGACCCCTAAACATTCATT
1 AAATTTCATTTTGACCCCTAAACTTTCATT
31808834 AAATTTCATTTT
1 AAATTTCATTTT
31808846 AATCCTAAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
29 4 0.06
30 60 0.94
ACGTcount: A:0.30, C:0.21, G:0.04, T:0.45
Consensus pattern (30 bp):
AAATTTCATTTTGACCCCTAAACTTTCATT
Found at i:31809222 original size:3 final size:3
Alignment explanation
Indices: 31809214--31809254 Score: 64
Period size: 3 Copynumber: 13.0 Consensus size: 3
31809204 GCTCGGTTTT
31809214 GAA GAA GAA GAA GAA GGAA GAA GAA GAA GAA GAAA GAA GAA
1 GAA GAA GAA GAA GAA -GAA GAA GAA GAA GAA G-AA GAA GAA
31809255 AAAAAAGAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
3 30 0.83
4 6 0.17
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:31809235 original size:13 final size:12
Alignment explanation
Indices: 31809214--31809254 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 12
31809204 GCTCGGTTTT
31809214 GAAGAAGAAGAA
1 GAAGAAGAAGAA
31809226 GAAGGAAGAAGAA
1 GAA-GAAGAAGAA
31809239 GAAGAAGAAAGAA
1 GAAGAAG-AAGAA
31809252 GAA
1 GAA
31809255 AAAAAAGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.26
13 20 0.74
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAGAA
Found at i:31809238 original size:19 final size:19
Alignment explanation
Indices: 31809214--31809254 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
31809204 GCTCGGTTTT
*
31809214 GAAGAAGAAGAAGAAGGAA
1 GAAGAAGAAGAAGAAAGAA
31809233 GAAGAAGAAGAAGAAAGAA
1 GAAGAAGAAGAAGAAAGAA
31809252 GAA
1 GAA
31809255 AAAAAAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (19 bp):
GAAGAAGAAGAAGAAAGAA
Found at i:31809262 original size:16 final size:16
Alignment explanation
Indices: 31809215--31809264 Score: 73
Period size: 16 Copynumber: 3.1 Consensus size: 16
31809205 CTCGGTTTTG
*
31809215 AAGAAGAAGAAGAAGG
1 AAGAAGAAGAAGAAGA
31809231 AAGAAGAAGAAGAAGA
1 AAGAAGAAGAAGAAGA
* *
31809247 AAGAAGAAAAAAAAGA
1 AAGAAGAAGAAGAAGA
31809263 AA
1 AA
31809265 AAAAATTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (16 bp):
AAGAAGAAGAAGAAGA
Found at i:31809262 original size:19 final size:19
Alignment explanation
Indices: 31809221--31809263 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
31809211 TTTGAAGAAG
* * *
31809221 AAGAAGAAGGAAGAAGAAG
1 AAGAAGAAAGAAGAAAAAA
31809240 AAGAAGAAAGAAGAAAAAA
1 AAGAAGAAAGAAGAAAAAA
31809259 AAGAA
1 AAGAA
31809264 AAAAAATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (19 bp):
AAGAAGAAAGAAGAAAAAA
Found at i:31809554 original size:23 final size:22
Alignment explanation
Indices: 31809528--31809605 Score: 79
Period size: 23 Copynumber: 3.3 Consensus size: 22
31809518 GCAGCCCAGC
31809528 AGAAAAAA-AAAGGAAGAAAAAGA
1 AGAAAAAAGAAA--AAGAAAAAGA
31809551 AGAAAAAAGGAAAAAGAAAAA-A
1 AGAAAAAA-GAAAAAGAAAAAGA
31809573 AGAAAAAAGAAAAAAAGAAAAAAGGA
1 AGAAAAAAG--AAAAAG-AAAAA-GA
31809599 AGAAAAA
1 AGAAAAA
31809606 GGGGGTTCAA
Statistics
Matches: 48, Mismatches: 0, Indels: 11
0.81 0.00 0.19
Matches are distributed among these distances:
21 1 0.02
22 9 0.19
23 22 0.46
24 5 0.10
25 3 0.06
26 8 0.17
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (22 bp):
AGAAAAAAGAAAAAGAAAAAGA
Found at i:31809563 original size:8 final size:8
Alignment explanation
Indices: 31809533--31809604 Score: 60
Period size: 8 Copynumber: 8.8 Consensus size: 8
31809523 CCAGCAGAAA
31809533 AAAAAAGG
1 AAAAAAGG
31809541 AAGAAAAAGAAG
1 -A-AAAAAG--G
31809553 AAAAAAGG
1 AAAAAAGG
31809561 -AAAAA-G
1 AAAAAAGG
*
31809567 AAAAAAAG
1 AAAAAAGG
31809575 AAAAAA-G
1 AAAAAAGG
*
31809582 AAAAAAAG
1 AAAAAAGG
31809590 AAAAAAGG
1 AAAAAAGG
31809598 AAGAAAA
1 AA-AAAA
31809605 AGGGGGTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 14
0.79 0.01 0.20
Matches are distributed among these distances:
6 1 0.02
7 17 0.31
8 18 0.33
9 5 0.09
10 12 0.22
11 1 0.02
12 1 0.02
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (8 bp):
AAAAAAGG
Found at i:31809566 original size:7 final size:7
Alignment explanation
Indices: 31809545--31809596 Score: 68
Period size: 7 Copynumber: 7.0 Consensus size: 7
31809535 AAAAGGAAGA
31809545 AAAAGAAG
1 AAAA-AAG
31809553 AAAAAAG
1 AAAAAAG
*
31809560 GAAAAAG
1 AAAAAAG
31809567 AAAAAAAG
1 -AAAAAAG
31809575 AAAAAAG
1 AAAAAAG
31809582 AAAAAAAG
1 -AAAAAAG
31809590 AAAAAAG
1 AAAAAAG
31809597 GAAGAAAAAG
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
7 23 0.57
8 17 0.43
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:31809573 original size:15 final size:15
Alignment explanation
Indices: 31809543--31809607 Score: 76
Period size: 15 Copynumber: 4.1 Consensus size: 15
31809533 AAAAAAGGAA
31809543 GAAAAAGAAGAAAAAAG
1 GAAAAAG-A-AAAAAAG
31809560 GAAAAAGAAAAAAAG
1 GAAAAAGAAAAAAAG
*
31809575 AAAAAAGAAAAAAAG
1 GAAAAAGAAAAAAAG
*
31809590 AAAAAAGGAAGAAAAAG
1 GAAAAA-GAA-AAAAAG
31809607 G
1 G
31809608 GGGTTCAATT
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
15 27 0.61
16 4 0.09
17 13 0.30
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (15 bp):
GAAAAAGAAAAAAAG
Found at i:31809591 original size:37 final size:37
Alignment explanation
Indices: 31809528--31809599 Score: 110
Period size: 37 Copynumber: 1.9 Consensus size: 37
31809518 GCAGCCCAGC
**
31809528 AGAAAAAAAAAGGAAGAAAAAGAAGAAAAAAGGAAAA
1 AGAAAAAAAAAAAAAGAAAAAGAAGAAAAAAGGAAAA
31809565 AGAAAAAAAGAAAAAAGAAAAA-AAGAAAAAAGGAA
1 AGAAAAAAA-AAAAAAGAAAAAGAAGAAAAAAGGAA
31809600 GAAAAAGGGG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
37 22 0.69
38 10 0.31
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (37 bp):
AGAAAAAAAAAAAAAGAAAAAGAAGAAAAAAGGAAAA
Found at i:31810250 original size:18 final size:17
Alignment explanation
Indices: 31810221--31810288 Score: 73
Period size: 18 Copynumber: 3.9 Consensus size: 17
31810211 AAAAATAATT
*
31810221 TCGTATTTCAAAAATCC
1 TCGTGTTTCAAAAATCC
* **
31810238 TCGTGTTTCCAAAATTT
1 TCGTGTTTCAAAAATCC
*
31810255 TGCGTGTTTTAAAAATCC
1 T-CGTGTTTCAAAAATCC
31810273 TCGTGTTTTCAAAAAT
1 TCGTG-TTTCAAAAAT
31810289 TTCAGTGTTT
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
17 18 0.45
18 22 0.55
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (17 bp):
TCGTGTTTCAAAAATCC
Found at i:31810299 original size:18 final size:18
Alignment explanation
Indices: 31810226--31810288 Score: 76
Period size: 17 Copynumber: 3.6 Consensus size: 18
31810216 TAATTTCGTA
31810226 TTTCAAAAATCCTCGTG-
1 TTTCAAAAATCCTCGTGT
* **
31810243 TTTCCAAAATTTTGCGTGT
1 TTTCAAAAATCCT-CGTGT
31810262 TTT-AAAAATCCTCGTGT
1 TTTCAAAAATCCTCGTGT
31810279 TTTCAAAAAT
1 TTTCAAAAAT
31810289 TTCAGTGTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
17 18 0.49
18 16 0.43
19 3 0.08
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.41
Consensus pattern (18 bp):
TTTCAAAAATCCTCGTGT
Found at i:31810316 original size:35 final size:35
Alignment explanation
Indices: 31810217--31810305 Score: 110
Period size: 35 Copynumber: 2.6 Consensus size: 35
31810207 AAAAAAAAAT
* * *
31810217 AATTT-CGTATTTCAAAAATCCTCGTGTTTCCAAA
1 AATTTGCGTGTTTTAAAAATCCTCGTGTTTTCAAA
*
31810251 ATTTTGCGTGTTTTAAAAATCCTCGTGTTTTCAAA
1 AATTTGCGTGTTTTAAAAATCCTCGTGTTTTCAAA
*
31810286 AATTT-CAGTGTTTTGAAAAT
1 AATTTGC-GTGTTTTAAAAAT
31810306 TTTTGTGTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
34 5 0.11
35 42 0.89
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.43
Consensus pattern (35 bp):
AATTTGCGTGTTTTAAAAATCCTCGTGTTTTCAAA
Found at i:31810325 original size:21 final size:21
Alignment explanation
Indices: 31810296--31810336 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
31810286 AATTTCAGTG
* *
31810296 TTTTGAAAATTTTTGTGTTTT
1 TTTTGAAAAATCTTGTGTTTT
*
31810317 TTTTTAAAAATCTTGTGTTT
1 TTTTGAAAAATCTTGTGTTT
31810337 CATAAATTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.22, C:0.02, G:0.12, T:0.63
Consensus pattern (21 bp):
TTTTGAAAAATCTTGTGTTTT
Found at i:31810391 original size:18 final size:17
Alignment explanation
Indices: 31810370--31810433 Score: 60
Period size: 18 Copynumber: 3.7 Consensus size: 17
31810360 AAATAATAAT
31810370 TGTTTTCAAAAATCTTCG
1 TGTTTTCAAAAAT-TTCG
*
31810388 TGTTTTC-AAGATTTCG
1 TGTTTTCAAAAATTTCG
* *
31810404 -GTGTTTCAAAATTTTTCA
1 TGT-TTTCAAAA-ATTTCG
31810422 TGTTTTCAAAAA
1 TGTTTTCAAAAA
31810434 ATTTTCTCGT
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
15 2 0.05
16 8 0.22
17 6 0.16
18 19 0.51
19 2 0.05
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.47
Consensus pattern (17 bp):
TGTTTTCAAAAATTTCG
Found at i:31810507 original size:17 final size:17
Alignment explanation
Indices: 31810481--31810695 Score: 123
Period size: 17 Copynumber: 12.4 Consensus size: 17
31810471 TTAAAAAAAA
*
31810481 AAAAACTTTCGTGTTTC
1 AAAAATTTTCGTGTTTC
31810498 AAAAATTTTCACGT-TTTC
1 AAAAATTTT--CGTGTTTC
31810516 AAAAATTTTCGTGTTTTC
1 AAAAATTTTCGTG-TTTC
* * *
31810534 AACAATTCTCATGTTTC
1 AAAAATTTTCGTGTTTC
** * *
31810551 ACGAATTTTCGCGCTTC
1 AAAAATTTTCGTGTTTC
***
31810568 AAAAAAAATCAG-GTTTTC
1 AAAAATTTTC-GTG-TTTC
** *
31810586 AAAAAAATTCGCGTATTTC
1 --AAAAATTTTCGTGTTTC
*
31810605 -AAAATTGTCGTGTTCTC
1 AAAAATTTTCGTGTT-TC
*
31810622 AAAAATTTTCGTGTTTT
1 AAAAATTTTCGTGTTTC
* *
31810639 AAGAATTTTCGTGTCTC
1 AAAAATTTTCGTGTTTC
* * *
31810656 TAAAATTCTCGTGTTTT
1 AAAAATTTTCGTGTTTC
*
31810673 AAAAATTTTTCTTGTTT-
1 AAAAA-TTTTCGTGTTTC
31810690 AAAAAT
1 AAAAAT
31810696 AAAAATAAAA
Statistics
Matches: 149, Mismatches: 37, Indels: 25
0.71 0.18 0.12
Matches are distributed among these distances:
16 15 0.10
17 67 0.45
18 53 0.36
19 8 0.05
20 6 0.04
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42
Consensus pattern (17 bp):
AAAAATTTTCGTGTTTC
Found at i:31810520 original size:36 final size:36
Alignment explanation
Indices: 31810481--31810549 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
31810471 TTAAAAAAAA
*
31810481 AAAAACTTTCGTG-TTTCAAAAATTTTCACGTTTTC
1 AAAAACTTTCGTGTTTTCAAAAATTCTCACGTTTTC
* * *
31810516 AAAAATTTTCGTGTTTTCAACAATTCTCATGTTT
1 AAAAACTTTCGTGTTTTCAAAAATTCTCACGTTT
31810550 CACGAATTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 12 0.41
36 17 0.59
ACGTcount: A:0.30, C:0.16, G:0.09, T:0.45
Consensus pattern (36 bp):
AAAAACTTTCGTGTTTTCAAAAATTCTCACGTTTTC
Found at i:31810548 original size:18 final size:18
Alignment explanation
Indices: 31810481--31810681 Score: 83
Period size: 18 Copynumber: 11.5 Consensus size: 18
31810471 TTAAAAAAAA
* *
31810481 AAAAACTTTCGTG-TTTC
1 AAAAATTTTCATGTTTTC
*
31810498 AAAAATTTTCACGTTTTC
1 AAAAATTTTCATGTTTTC
*
31810516 AAAAATTTTCGTGTTTTC
1 AAAAATTTTCATGTTTTC
* *
31810534 AACAATTCTCATG-TTTC
1 AAAAATTTTCATGTTTTC
** ** *
31810551 ACGAATTTTCGCG-CTTC
1 AAAAATTTTCATGTTTTC
*** *
31810568 AAAAAAAATCAGGTTTTC
1 AAAAATTTTCATGTTTTC
** **
31810586 AAAAAAATTCGCGTATTTC
1 AAAAATTTTCATGT-TTTC
* * *
31810605 -AAAATTGTCGTGTTCTC
1 AAAAATTTTCATGTTTTC
*
31810622 AAAAATTTTCGTGTTTT-
1 AAAAATTTTCATGTTTTC
* * *
31810639 AAGAATTTTCGTG-TCTC
1 AAAAATTTTCATGTTTTC
* * *
31810656 TAAAATTCTCGTGTTTT-
1 AAAAATTTTCATGTTTTC
31810673 AAAAATTTT
1 AAAAATTTT
31810682 TCTTGTTTAA
Statistics
Matches: 138, Mismatches: 40, Indels: 12
0.73 0.21 0.06
Matches are distributed among these distances:
16 2 0.01
17 63 0.46
18 69 0.50
19 4 0.03
ACGTcount: A:0.31, C:0.15, G:0.11, T:0.42
Consensus pattern (18 bp):
AAAAATTTTCATGTTTTC
Found at i:31810551 original size:35 final size:35
Alignment explanation
Indices: 31810481--31810695 Score: 136
Period size: 35 Copynumber: 6.2 Consensus size: 35
31810471 TTAAAAAAAA
* *
31810481 AAAAACTTTCGTG-TTTCAAAAATTTTCACGTTTTC
1 AAAAATTTTCGTGTTTTCAAAAATTTTCATG-TTTC
* *
31810516 AAAAATTTTCGTGTTTTCAACAATTCTCATGTTTC
1 AAAAATTTTCGTGTTTTCAAAAATTTTCATGTTTC
** * * *** *
31810551 ACGAATTTTCGCG-CTTCAAAAAAAATCAGGTTTTC
1 AAAAATTTTCGTGTTTTCAAAAATTTTCATG-TTTC
** * * *
31810586 AAAAAAATTCGCGTATTTC-AAAATTGTCGTGTTCTC
1 AAAAATTTTCGTGT-TTTCAAAAATTTTCATGTT-TC
* * *
31810622 AAAAATTTTCGTGTTTT-AAGAATTTTCGTGTCTC
1 AAAAATTTTCGTGTTTTCAAAAATTTTCATGTTTC
* * *
31810656 TAAAATTCTCGTGTTTT-AAAAATTTTTCTTGTTT-
1 AAAAATTTTCGTGTTTTCAAAAA-TTTTCATGTTTC
31810690 AAAAAT
1 AAAAAT
31810696 AAAAATAAAA
Statistics
Matches: 138, Mismatches: 35, Indels: 15
0.73 0.19 0.08
Matches are distributed among these distances:
34 37 0.27
35 64 0.46
36 34 0.25
37 3 0.02
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42
Consensus pattern (35 bp):
AAAAATTTTCGTGTTTTCAAAAATTTTCATGTTTC
Found at i:31811787 original size:16 final size:16
Alignment explanation
Indices: 31811766--31811820 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
31811756 AGTTTGGTTC
31811766 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
*
31811782 GCTGTAATTGAATAGA
1 GCTGTAATGGAATAGA
* *
31811798 GCTGTAATGGGATAAA
1 GCTGTAATGGAATAGA
31811814 GCTGTAA
1 GCTGTAA
31811821 ACAGTAATTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.36, C:0.07, G:0.29, T:0.27
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:31813907 original size:26 final size:26
Alignment explanation
Indices: 31813875--31814243 Score: 452
Period size: 26 Copynumber: 14.2 Consensus size: 26
31813865 GTGTTGACCA
*
31813875 AAATACCCTCGATGGGTAAATTACCA
1 AAATACCCTCGATGGGTAAATTACCG
* *
31813901 AAATACCCTTGATGGGTAAATTACTG
1 AAATACCCTCGATGGGTAAATTACCG
* *
31813927 AAATACCCTCAATGGGTAAATTACAG
1 AAATACCCTCGATGGGTAAATTACCG
* * *
31813953 AAATATCCTCAATGGGTATATTACCG
1 AAATACCCTCGATGGGTAAATTACCG
*
31813979 AAATACCCTCGATGGGTAAATTATCG
1 AAATACCCTCGATGGGTAAATTACCG
*
31814005 AAATACCCTCGATGGGTAAATTACTG
1 AAATACCCTCGATGGGTAAATTACCG
* *
31814031 AAATACCCTCAATCGGTAAATTACCG
1 AAATACCCTCGATGGGTAAATTACCG
** * *
31814057 AAATACCCTTAATAGGTAAATTATCG
1 AAATACCCTCGATGGGTAAATTACCG
* *
31814083 AATTACCCTCGAT-GGTAAATTGCCG
1 AAATACCCTCGATGGGTAAATTACCG
* *
31814108 AAATACCCTCGATAGGTAAATTACCA
1 AAATACCCTCGATGGGTAAATTACCG
* * *
31814134 AAATACCCTCAATGGGTAAAGTATCG
1 AAATACCCTCGATGGGTAAATTACCG
** * *
31814160 AAATACCCTTAATGGGTAAAGTGCCG
1 AAATACCCTCGATGGGTAAATTACCG
* *
31814186 AAATATCCTTGATGGGTAAATTACCG
1 AAATACCCTCGATGGGTAAATTACCG
* *
31814212 AAATACCCCCGATGGGTAAATTACTG
1 AAATACCCTCGATGGGTAAATTACCG
31814238 AAATAC
1 AAATAC
31814244 GCCCAAAAGG
Statistics
Matches: 297, Mismatches: 45, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
25 22 0.07
26 275 0.93
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (26 bp):
AAATACCCTCGATGGGTAAATTACCG
Found at i:31820624 original size:28 final size:28
Alignment explanation
Indices: 31820550--31820615 Score: 114
Period size: 28 Copynumber: 2.3 Consensus size: 28
31820540 TCAAGGAAGT
31820550 GGGAGAGTATGGGAGTGTGGTGCCGTTTGG
1 GGGAG-GT-TGGGAGTGTGGTGCCGTTTGG
31820580 GGGAGGTTGGGAGTGTGGTGCCGTTTGG
1 GGGAGGTTGGGAGTGTGGTGCCGTTTGG
31820608 GGGAGGTT
1 GGGAGGTT
31820616 TTGCTTGTGT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
28 29 0.81
29 2 0.06
30 5 0.14
ACGTcount: A:0.11, C:0.06, G:0.56, T:0.27
Consensus pattern (28 bp):
GGGAGGTTGGGAGTGTGGTGCCGTTTGG
Found at i:31821631 original size:26 final size:26
Alignment explanation
Indices: 31821603--31821833 Score: 304
Period size: 26 Copynumber: 8.9 Consensus size: 26
31821593 GTGTTGATTA
*
31821603 AAATACCCTCGATGGGTAAATTATCA
1 AAATACCCTCGATGGGTAAATTATCG
**
31821629 AAATACATTCGATGGGTAAATTATCG
1 AAATACCCTCGATGGGTAAATTATCG
* *
31821655 AAATACCTTCGATGGGTAAATTACCG
1 AAATACCCTCGATGGGTAAATTATCG
*
31821681 CAATACCCTCGATGGGTAAATTATCG
1 AAATACCCTCGATGGGTAAATTATCG
* * *
31821707 AAATACCCTCAATGGGTAAATTACCA
1 AAATACCCTCGATGGGTAAATTATCG
* * *
31821733 AAATACCTTCAATGGGTAAATTATTG
1 AAATACCCTCGATGGGTAAATTATCG
* *
31821759 AAATACCCTCGATTGGTAAATTACCG
1 AAATACCCTCGATGGGTAAATTATCG
31821785 AAATACCCTCGATGGGTAAATTA-CTG
1 AAATACCCTCGATGGGTAAATTATC-G
31821811 AAATACCC-CTGATGGGTAAATTA
1 AAATACCCTC-GATGGGTAAATTA
31821834 CTAAAATACC
Statistics
Matches: 181, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
25 2 0.01
26 179 0.99
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (26 bp):
AAATACCCTCGATGGGTAAATTATCG
Found at i:31821667 original size:52 final size:52
Alignment explanation
Indices: 31821603--31821844 Score: 335
Period size: 52 Copynumber: 4.7 Consensus size: 52
31821593 GTGTTGATTA
* **
31821603 AAATACCCTCGATGGGTAAATTATCAAAATACATTCGATGGGTAAATTATCG
1 AAATACCCTCGATGGGTAAATTACCAAAATACCCTCGATGGGTAAATTATCG
* **
31821655 AAATACCTTCGATGGGTAAATTACCGCAATACCCTCGATGGGTAAATTATCG
1 AAATACCCTCGATGGGTAAATTACCAAAATACCCTCGATGGGTAAATTATCG
* * * *
31821707 AAATACCCTCAATGGGTAAATTACCAAAATACCTTCAATGGGTAAATTATTG
1 AAATACCCTCGATGGGTAAATTACCAAAATACCCTCGATGGGTAAATTATCG
* *
31821759 AAATACCCTCGATTGGTAAATTACCGAAATACCCTCGATGGGTAAATTA-CTG
1 AAATACCCTCGATGGGTAAATTACCAAAATACCCTCGATGGGTAAATTATC-G
*
31821811 AAATACCC-CTGATGGGTAAATTACTAAAATACCC
1 AAATACCCTC-GATGGGTAAATTACCAAAATACCC
31821845 CAGAAGGGTA
Statistics
Matches: 166, Mismatches: 22, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
51 1 0.01
52 165 0.99
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.27
Consensus pattern (52 bp):
AAATACCCTCGATGGGTAAATTACCAAAATACCCTCGATGGGTAAATTATCG
Found at i:31821834 original size:26 final size:26
Alignment explanation
Indices: 31821603--31821871 Score: 287
Period size: 26 Copynumber: 10.3 Consensus size: 26
31821593 GTGTTGATTA
*
31821603 AAATACCCTCGATGGGTAAATTA-TCA
1 AAATACCCTCGATGGGTAAATTACT-G
**
31821629 AAATACATTCGATGGGTAAATTA-TCG
1 AAATACCCTCGATGGGTAAATTACT-G
* *
31821655 AAATACCTTCGATGGGTAAATTACCG
1 AAATACCCTCGATGGGTAAATTACTG
*
31821681 CAATACCCTCGATGGGTAAATTA-TCG
1 AAATACCCTCGATGGGTAAATTACT-G
* **
31821707 AAATACCCTCAATGGGTAAATTACCA
1 AAATACCCTCGATGGGTAAATTACTG
* * *
31821733 AAATACCTTCAATGGGTAAATTATTG
1 AAATACCCTCGATGGGTAAATTACTG
* *
31821759 AAATACCCTCGATTGGTAAATTACCG
1 AAATACCCTCGATGGGTAAATTACTG
31821785 AAATACCCTCGATGGGTAAATTACTG
1 AAATACCCTCGATGGGTAAATTACTG
*
31821811 AAATACCC-CTGATGGGTAAATTACTA
1 AAATACCCTC-GATGGGTAAATTACTG
* *
31821837 AAATACCC-CAGAAGGGTAGATTGACTG
1 AAATACCCTC-GATGGGTAAATT-ACTG
*
31821864 ATATACCC
1 AAATACCC
31821872 CTAGTAGATG
Statistics
Matches: 209, Mismatches: 29, Indels: 9
0.85 0.12 0.04
Matches are distributed among these distances:
25 1 0.00
26 198 0.95
27 10 0.05
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (26 bp):
AAATACCCTCGATGGGTAAATTACTG
Found at i:31822620 original size:21 final size:22
Alignment explanation
Indices: 31822596--31822639 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 22
31822586 TACAAATAAG
31822596 TTTTCACA-ACAAACAC-TATTT
1 TTTTCA-AGACAAACACGTATTT
31822617 TTTTCAAGACAAACACGTATTT
1 TTTTCAAGACAAACACGTATTT
31822639 T
1 T
31822640 CAATTACAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 1 0.05
21 14 0.67
22 6 0.29
ACGTcount: A:0.36, C:0.20, G:0.05, T:0.39
Consensus pattern (22 bp):
TTTTCAAGACAAACACGTATTT
Found at i:31823253 original size:142 final size:146
Alignment explanation
Indices: 31823079--31823360 Score: 419
Period size: 146 Copynumber: 2.0 Consensus size: 146
31823069 TCCAAATCAC
* * * * *
31823079 ATTTTATAGATCTATTATTAAGAAATGGGTTTTAGTTT-TAGTTTTTTTGT-TT-TCTTC-TGTA
1 ATTTTACAGATCTATTATTAAGAAATGAGTTTTAGTTTAAAATTTTTTTGTATTATCTTCTTGGA
*
31823140 AATTGATTGAGAGTTGAAACTGTTGAGAAATGAATTTTTATTCTTTCTTGTTGTGTTCTACAAAT
66 AATTGATTGAGAGTTGAAACTGTTGAGAAATGAATTTTTATTCTTTCTTGTTATGTTCTACAAAT
31823205 TCATGGAGAGAAGAGA
131 TCATGGAGAGAAGAGA
*
31823221 ATTTTACAGATCTATTATTAAGAAATGAGTTTTAGTTTAAAATTTTTTTTTATTATCTTCTTGGA
1 ATTTTACAGATCTATTATTAAGAAATGAGTTTTAGTTTAAAATTTTTTTGTATTATCTTCTTGGA
* * * * *
31823286 AATTGATTGAGAGTTGAAAGTGTTGAGAAATGATTTTTTTTTCTTTCTTGTTATGTTGTAGAAAT
66 AATTGATTGAGAGTTGAAACTGTTGAGAAATGAATTTTTATTCTTTCTTGTTATGTTCTACAAAT
*
31823351 TGATGGAGAG
131 TCATGGAGAG
31823361 TAGAAGAGAA
Statistics
Matches: 123, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
142 36 0.29
143 9 0.07
144 2 0.02
145 5 0.04
146 71 0.58
ACGTcount: A:0.29, C:0.05, G:0.19, T:0.47
Consensus pattern (146 bp):
ATTTTACAGATCTATTATTAAGAAATGAGTTTTAGTTTAAAATTTTTTTGTATTATCTTCTTGGA
AATTGATTGAGAGTTGAAACTGTTGAGAAATGAATTTTTATTCTTTCTTGTTATGTTCTACAAAT
TCATGGAGAGAAGAGA
Found at i:31824025 original size:23 final size:24
Alignment explanation
Indices: 31823981--31824026 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
31823971 AATATAATTT
31823981 TTAAATATTTTTAAGAAATTAATA
1 TTAAATATTTTTAAGAAATTAATA
* *
31824005 TTAATTATTTTTAA-AATTTAAT
1 TTAAATATTTTTAAGAAATTAAT
31824027 TTGAACGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (24 bp):
TTAAATATTTTTAAGAAATTAATA
Found at i:31844983 original size:4 final size:4
Alignment explanation
Indices: 31844974--31844999 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
31844964 GTTTATCAGT
31844974 TTAA TTAA TTAA TTAA TTAA TTAA TT
1 TTAA TTAA TTAA TTAA TTAA TTAA TT
31845000 TCTTTATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (4 bp):
TTAA
Found at i:31854874 original size:182 final size:181
Alignment explanation
Indices: 31854539--31854901 Score: 636
Period size: 182 Copynumber: 2.0 Consensus size: 181
31854529 ATAAAGTGTA
*
31854539 AATATAGTATTTTTGTGTGAATATATGATGCTAAGATTTAAGAATAATTTATATGAATGAATGAT
1 AATATAGTATTTTTGTGTGAATATATGATGCTAAGATTTAAGAATAAGTTATATGAATGAATGAT
*
31854604 TAGCGATGTCACACTAGTTATCCTTTATGTCCCAAAATTTAAGAAAGTTAGGATTAAATTGAATG
66 TAGCGATGTCACACTAATTATCCTTTATGTCCCAAAATTTAAGAAAGTTAGGATTAAATTGAATG
31854669 GATTGGCGAATTGTCGGGCTCCACTGAGAATTTTAGAAATTTTAGTGGTTG
131 GATTGGCGAATTGTCGGGCTCCACTGAGAATTTTAGAAATTTTAGTGGTTG
* * *
31854720 AATATGGTATTTTTGTGTGAATATATGATGCTAAGATTTGAGAATAAGTTGTATGAATGAATGAT
1 AATATAGTATTTTTGTGTGAATATATGATGCTAAGATTTAAGAATAAGTTATATGAATGAATGAT
**
31854785 TAGCGATGTCACACCTAATTATCCTTTATGTCCTTAAATTTAAGAAAGTTAGGATTAAATTGAAT
66 TAGCGATGTCACA-CTAATTATCCTTTATGTCCCAAAATTTAAGAAAGTTAGGATTAAATTGAAT
* *
31854850 GGATTGGTGAATTGTTGGGCTCCACTGAGAATTTTAGAAATTTTAGTGGTTG
130 GGATTGGCGAATTGTCGGGCTCCACTGAGAATTTTAGAAATTTTAGTGGTTG
31854902 GTTTGTGATT
Statistics
Matches: 172, Mismatches: 9, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
181 74 0.43
182 98 0.57
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (181 bp):
AATATAGTATTTTTGTGTGAATATATGATGCTAAGATTTAAGAATAAGTTATATGAATGAATGAT
TAGCGATGTCACACTAATTATCCTTTATGTCCCAAAATTTAAGAAAGTTAGGATTAAATTGAATG
GATTGGCGAATTGTCGGGCTCCACTGAGAATTTTAGAAATTTTAGTGGTTG
Found at i:31855987 original size:68 final size:70
Alignment explanation
Indices: 31855877--31856062 Score: 225
Period size: 70 Copynumber: 2.7 Consensus size: 70
31855867 AGGTTTGTGG
* * * *
31855877 TGTAAGACCATAGCTC-ACTATGATAACCAATAGAGTCCGCTAGGA-AA-ATAAACATGAGGTTA
1 TGTAAGACCATAGCTCGACTATGACAACAAATAGAGTCCGCTAGGACAACAAAAACAAGAGGTTA
31855939 CATTA
66 CATTA
* * * * *
31855944 TGTAAGACCATGGCTCGGCCATGACAACAAATAGAGTCTGCTAGGACAACAAAAACAAGGGGTTA
1 TGTAAGACCATAGCTCGACTATGACAACAAATAGAGTCCGCTAGGACAACAAAAACAAGAGGTTA
*
31856009 CATTG
66 CATTA
* * *
31856014 TGTAAAACCATAGCTCGACTATGGCAACAAATAAAAGTCCGCTAGGACA
1 TGTAAGACCATAGCTCGACTATGACAACAAAT-AGAGTCCGCTAGGACA
31856063 GTGAACCAGG
Statistics
Matches: 98, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
67 15 0.15
68 24 0.24
69 2 0.02
70 43 0.44
71 14 0.14
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (70 bp):
TGTAAGACCATAGCTCGACTATGACAACAAATAGAGTCCGCTAGGACAACAAAAACAAGAGGTTA
CATTA
Found at i:31858269 original size:13 final size:13
Alignment explanation
Indices: 31858251--31858314 Score: 92
Period size: 13 Copynumber: 4.9 Consensus size: 13
31858241 AGTTCTTCAT
31858251 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
31858264 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
31858277 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
* *
31858290 TACTTTTGAGAAG
1 TGCTTTTGAAAAG
31858303 TGCTTTTGAAAA
1 TGCTTTTGAAAA
31858315 TTTTGTGTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 43 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:31860441 original size:72 final size:72
Alignment explanation
Indices: 31860351--31860518 Score: 205
Period size: 72 Copynumber: 2.3 Consensus size: 72
31860341 AAAATCACAT
* * * *
31860351 ATAAACAACTATTGATAAAACTA-ATTTAGTA-AAAAATAAGTAGAATATAAATTCAATATCTAA
1 ATAAACAACTATTAATAAAACTAGA-TTA-CACAAAAATAAGTAGAACATAAATTCAATATCCAA
*
31860414 AGACCAAAC
64 AAACCAAAC
* *
31860423 ATAAACAACTTTTAATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
1 ATAAACAACTATTAATAAAACTAGATTACACAAAAATAAGTAGAACATAAATTCAATATCCAAAA
31860488 ACCAAAC
66 ACCAAAC
* * * *
31860495 ATAAATAATTATTGATAAACCTAG
1 ATAAACAACTATTAATAAAACTAG
31860519 TTTAGCATTG
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
71 1 0.01
72 80 0.98
73 1 0.01
ACGTcount: A:0.55, C:0.13, G:0.06, T:0.26
Consensus pattern (72 bp):
ATAAACAACTATTAATAAAACTAGATTACACAAAAATAAGTAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:31860964 original size:18 final size:18
Alignment explanation
Indices: 31860947--31861011 Score: 87
Period size: 18 Copynumber: 3.7 Consensus size: 18
31860937 TCCATCAATT
*
31860947 TGAACATCATTTGAAATT
1 TGAACATCATTTGAAATG
* *
31860965 TGAACACCATTAGAAATG
1 TGAACATCATTTGAAATG
*
31860983 TGAACATCATAT-AAATG
1 TGAACATCATTTGAAATG
31861000 TGAACATCATTT
1 TGAACATCATTT
31861012 CTCATATTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
17 16 0.40
18 24 0.60
ACGTcount: A:0.42, C:0.14, G:0.12, T:0.32
Consensus pattern (18 bp):
TGAACATCATTTGAAATG
Found at i:31863496 original size:19 final size:19
Alignment explanation
Indices: 31863472--31863595 Score: 86
Period size: 19 Copynumber: 6.9 Consensus size: 19
31863462 GGTGGAGAAA
*
31863472 AGGAACAAAGCACCAGCAG
1 AGGAACAAAGAACCAGCAG
* *
31863491 AGGAACAAATAACCAACAG
1 AGGAACAAAGAACCAGCAG
* *
31863510 AGGAAAAAAGAACCAGCACC
1 AGGAACAAAGAACCAGCA-G
31863530 A-G--CAGAAGAA-CA--A-
1 AGGAACA-AAGAACCAGCAG
* *
31863543 A-GAAC-CAGCACCAGCAG
1 AGGAACAAAGAACCAGCAG
* *
31863560 AGGATCAAAGAAGCAGCAG
1 AGGAACAAAGAACCAGCAG
31863579 AGGAACAAAGAACCAGC
1 AGGAACAAAGAACCAGC
31863596 GATTAGAAAA
Statistics
Matches: 79, Mismatches: 16, Indels: 20
0.69 0.14 0.17
Matches are distributed among these distances:
13 5 0.06
14 2 0.03
15 2 0.03
16 1 0.01
17 4 0.05
18 8 0.10
19 56 0.71
20 1 0.01
ACGTcount: A:0.52, C:0.23, G:0.23, T:0.02
Consensus pattern (19 bp):
AGGAACAAAGAACCAGCAG
Found at i:31863530 original size:25 final size:25
Alignment explanation
Indices: 31863480--31863595 Score: 112
Period size: 25 Copynumber: 5.1 Consensus size: 25
31863470 AAAGGAACAA
*
31863480 AGCACCAGCAGAGGAACAAATAA-C
1 AGCACCAGCAGAGGAACAAAGAACC
*
31863504 --CA--A-CAGAGGAAAAAAGAACC
1 AGCACCAGCAGAGGAACAAAGAACC
*
31863524 AGCACCAGCAGAAGAACAAAGAACC
1 AGCACCAGCAGAGGAACAAAGAACC
*
31863549 AGCACCAGCAGAGGATCAAAG-A--
1 AGCACCAGCAGAGGAACAAAGAACC
31863571 AG---CAGCAGAGGAACAAAGAACC
1 AGCACCAGCAGAGGAACAAAGAACC
31863593 AGC
1 AGC
31863596 GATTAGAAAA
Statistics
Matches: 75, Mismatches: 7, Indels: 21
0.73 0.07 0.20
Matches are distributed among these distances:
19 28 0.37
20 3 0.04
22 8 0.11
24 2 0.03
25 34 0.45
ACGTcount: A:0.51, C:0.24, G:0.23, T:0.02
Consensus pattern (25 bp):
AGCACCAGCAGAGGAACAAAGAACC
Found at i:31867783 original size:29 final size:30
Alignment explanation
Indices: 31867723--31867792 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 30
31867713 ACAGATACAA
* *
31867723 CCACAAAGACTCTTCATATAACAGAATCAG
1 CCACAAAGGCTCTTCATACAACAGAATCAG
* *
31867753 CCTCAAAGGCTCTT-ATACAACAGAATTAG
1 CCACAAAGGCTCTTCATACAACAGAATCAG
*
31867782 CCACGAAGGCT
1 CCACAAAGGCT
31867793 TTACTTTAAC
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 22 0.65
30 12 0.35
ACGTcount: A:0.39, C:0.27, G:0.14, T:0.20
Consensus pattern (30 bp):
CCACAAAGGCTCTTCATACAACAGAATCAG
Found at i:31875531 original size:23 final size:23
Alignment explanation
Indices: 31875500--31875544 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
31875490 TACAATCAAC
31875500 ATTACACATATC-AACAAGTCATA
1 ATTACACAT-TCAAACAAGTCATA
*
31875523 ATTAGACATTCAAAACAAGTCA
1 ATTACACATTC-AAACAAGTCA
31875545 AAATAAGTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 2 0.11
23 8 0.42
24 9 0.47
ACGTcount: A:0.49, C:0.20, G:0.07, T:0.24
Consensus pattern (23 bp):
ATTACACATTCAAACAAGTCATA
Found at i:31876629 original size:24 final size:24
Alignment explanation
Indices: 31876597--31876647 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
31876587 TACTTGGGTA
*
31876597 ATTTGCCGTCAATTCAACCTTTAC
1 ATTTGCCGTCAATTCAACCATTAC
* *
31876621 ATTTTCCGTCAATTCATCCATTAC
1 ATTTGCCGTCAATTCAACCATTAC
31876645 ATT
1 ATT
31876648 CGTAGTGCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.27, G:0.06, T:0.41
Consensus pattern (24 bp):
ATTTGCCGTCAATTCAACCATTAC
Found at i:31878690 original size:11 final size:11
Alignment explanation
Indices: 31878674--31878720 Score: 58
Period size: 11 Copynumber: 4.1 Consensus size: 11
31878664 TTTTATACTA
31878674 AATAAAATAAT
1 AATAAAATAAT
31878685 AATAAAATATAT
1 AATAAAATA-AT
* *
31878697 CATTAAAATATT
1 -AATAAAATAAT
31878709 AATAAAATAAT
1 AATAAAATAAT
31878720 A
1 A
31878721 TTTATCTAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
11 19 0.63
12 3 0.10
13 8 0.27
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:31879579 original size:27 final size:27
Alignment explanation
Indices: 31879531--31879587 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
31879521 CATCCTGACT
* *
31879531 ATTTGGATTATTATTGCAACCAAGACC
1 ATTTGGATTATCATTGAAACCAAGACC
*
31879558 ATTTGGATTATCATT-AAGACCAAGATC
1 ATTTGGATTATCATTGAA-ACCAAGACC
31879585 ATT
1 ATT
31879588 CCGATTTCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (27 bp):
ATTTGGATTATCATTGAAACCAAGACC
Found at i:31881707 original size:13 final size:13
Alignment explanation
Indices: 31881689--31881718 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
31881679 TTTCAATGAC
31881689 TTAATTAATGGAA
1 TTAATTAATGGAA
*
31881702 TTAATTAATGTAA
1 TTAATTAATGGAA
31881715 TTAA
1 TTAA
31881719 AAGATTTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.43
Consensus pattern (13 bp):
TTAATTAATGGAA
Found at i:31883478 original size:17 final size:17
Alignment explanation
Indices: 31883419--31883478 Score: 61
Period size: 15 Copynumber: 3.4 Consensus size: 17
31883409 AAAGAGTGAG
31883419 AAGTAAAAGTTTAGGCGGA
1 AAGTAAAAGTTT-GG-GGA
*
31883438 AAATAAAAAGTTTTGGGG-
1 AAGT-AAAAG-TTTGGGGA
31883456 AA-TAAAAGTTTGGGGA
1 AAGTAAAAGTTTGGGGA
31883472 AAGTAAA
1 AAGTAAA
31883479 TAGGGGAAGT
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
15 7 0.19
16 7 0.19
17 5 0.14
18 2 0.06
19 5 0.14
20 7 0.19
21 3 0.08
ACGTcount: A:0.47, C:0.02, G:0.28, T:0.23
Consensus pattern (17 bp):
AAGTAAAAGTTTGGGGA
Found at i:31883849 original size:9 final size:9
Alignment explanation
Indices: 31883831--31883867 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
31883821 TATAGTTTGA
*
31883831 TATTCAAAT
1 TATTCGAAT
31883840 TATTCGAAT
1 TATTCGAAT
*
31883849 TATTCGAGT
1 TATTCGAAT
31883858 TATTCGAAT
1 TATTCGAAT
31883867 T
1 T
31883868 CGAAAATTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:31887267 original size:64 final size:65
Alignment explanation
Indices: 31887187--31887315 Score: 206
Period size: 65 Copynumber: 2.0 Consensus size: 65
31887177 ATAACCATTC
* *
31887187 AAATTGGGACGAAATGGA-TGTCATACAAAACTACCCAGCCAAATTGCCTTGCAAAAATTTGATT
1 AAATTGGGACGAAATGGACTATCATACAAAACTACCCAGCCAAATTGCCCTGCAAAAATTTGATT
* * *
31887251 AAATTGGGATGAAATGGACTATCATGCCAAACTACCCAGCCAAATTGCCCTGCAAAAATTTGATT
1 AAATTGGGACGAAATGGACTATCATACAAAACTACCCAGCCAAATTGCCCTGCAAAAATTTGATT
31887316 GAATGCACTT
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
64 17 0.29
65 42 0.71
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (65 bp):
AAATTGGGACGAAATGGACTATCATACAAAACTACCCAGCCAAATTGCCCTGCAAAAATTTGATT
Found at i:31887430 original size:100 final size:101
Alignment explanation
Indices: 31887251--31888149 Score: 646
Period size: 101 Copynumber: 9.3 Consensus size: 101
31887241 AAATTTGATT
* * * * *
31887251 AAATTGGGATGAAATGGACTATCATGCCAAACTACCCAGCCAAATTGCCCTGCAAAAATTTGATT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATT
** * * *
31887316 GAATGC-ACTTTAAGATGACATTTTTATAAGTATTC
66 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * *
31887351 AAATTGGGGCGAAATAGACTGTCATGCAAAACTACCTAGCCAAACTGCCCTACCAAAA-TTGATT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATT
* * * *
31887415 GAAAGCAAAAATAAGAGGATATTTCTATAAGCAATC
66 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
** * ** * *
31887451 AAATTGAAACAAAATGGGTTGTCATGCTAAACTACCCCTA-CCAAACTCCCCTGCCAAAATTTGA
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTA--CCTAGCCAAACTGCCCTGCCAAAATTTGA
* * *
31887515 TTTAATGTAAAATTAAGAGGACATTTCTATAAGTATTC
64 TTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * * * * *
31887553 AATTTGGGACGAAATGGACTGTCTTGTCAAACGAACCT-GCTAAACTGCCCTGCCAATATTTGCT
1 AAATTGGGACGAAATGGACTGTCATGCCAAAC-TACCTAGCCAAACTGCCCTGCCAAAATTTGAT
* * * *
31887617 TGAATGCAAAATTAAGAGGTCATTTCTGTTAGCATTT
65 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * *
31887654 AAATTGGAACAAAATAGACTATCATGCCAAACTA--T--------T---CTGCCAAAATTTGATT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATT
* * * * *
31887706 TAATGAAAAATTAAGAGGATATTTTTATAAGCACTC
66 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * * *
31887742 AAATTGGGACAAAATTGACTG---T-------TA---AGTCAAACTGTCCTGCTAAAATTT-ATT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATT
** * *
31887793 GAATGATAAATTAAAAGGACAGTTCTATAA-CTATTC
66 GAATGCAAAATTAAGAGGACATTTCTATAAGC-ATTC
* * * * * * * *
31887829 AAATTAGGACAAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTACCAAAAATTGGTT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATT
* ** * * *
31887894 AAATATAAATTTAAAAGGACATTTTTATAAGCATTC
66 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
31887930 AAATTGGGACGAAATGGACTGTCATGCCAAACTA-C---CC-AA--------CCAAAATTTGATT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATT
31887982 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
66 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * ** * * * * * *
31888018 AATTTGGGACAAAATGGGTTGTCATGTCAAACTACCTTGCCAAACTACCCTGCTAATATTTGCTT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATT
* *
31888083 GAATGCAAAATTAAGAGAACATTTCTATTAGCATTC
66 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * * * *
31888119 ATATTAGGACGACATGAACTGTTATACCAAA
1 AAATTGGGACGAAATGGACTGTCATGCCAAA
31888150 TTGCTCAAAA
Statistics
Matches: 618, Mismatches: 135, Indels: 91
0.73 0.16 0.11
Matches are distributed among these distances:
78 2 0.00
85 2 0.00
86 1 0.00
87 48 0.08
88 140 0.23
89 1 0.00
90 1 0.00
91 1 0.00
92 2 0.00
93 2 0.00
96 2 0.00
97 4 0.01
98 1 0.00
99 11 0.02
100 117 0.19
101 219 0.35
102 63 0.10
103 1 0.00
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (101 bp):
AAATTGGGACGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATT
GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
Found at i:31887746 original size:88 final size:87
Alignment explanation
Indices: 31887601--31887872 Score: 271
Period size: 88 Copynumber: 3.1 Consensus size: 87
31887591 GCTAAACTGC
* * * * * *
31887601 CCTGCCAATATTTGCTTGAATGCAAAATTAAGAGG-TCATTTCTGTTAGCATTTAAATTGGAACA
1 CCTGCCAAAATTTGATTGAATGAAAAATTAAGAGGAT-ATTTCTATAAGCATTCAAATTGG-ACA
31887665 AAATAGACTATCATGCCAAACTAT
64 AAATAGACTATCATGCCAAACTAT
* * * *
31887689 TCTGCCAAAATTTGATTTAATGAAAAATTAAGAGGATATTTTTATAAGCACTCAAATTGGGACAA
1 CCTGCCAAAATTTGATTGAATGAAAAATTAAGAGGATATTTCTATAAGCATTCAAATT-GGACAA
* * * * * *
31887754 AATTGACTGTTAAGTCAAACTGT
65 AATAGACTATCATGCCAAACTAT
* * * * *
31887777 CCTGCTAAAATTT-ATTGAATGATAAATTAAAAGGACAGTTCTATAA-CTATTCAAATTAGGACA
1 CCTGCCAAAATTTGATTGAATGAAAAATTAAGAGGATATTTCTATAAGC-ATTCAAATT-GGACA
*
31887840 AAATAGACTATCATGCCAAACTAC
64 AAATAGACTATCATGCCAAACTAT
*
31887864 CCAGCCAAA
1 CCTGCCAAA
31887873 CTGCCCTACC
Statistics
Matches: 146, Mismatches: 35, Indels: 7
0.78 0.19 0.04
Matches are distributed among these distances:
86 1 0.01
87 64 0.44
88 78 0.53
89 3 0.02
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30
Consensus pattern (87 bp):
CCTGCCAAAATTTGATTGAATGAAAAATTAAGAGGATATTTCTATAAGCATTCAAATTGGACAAA
ATAGACTATCATGCCAAACTAT
Found at i:31887860 original size:87 final size:87
Alignment explanation
Indices: 31887601--31888032 Score: 256
Period size: 88 Copynumber: 4.8 Consensus size: 87
31887591 GCTAAACTGC
* * * * * * * * * *
31887601 CCTGCCAATATTTGCTTGAATGCAAAATTAAGAGGTCATTTCTGTTAGCATTTAAATTGGAACAA
1 CCTGCCAAAATTTGATTGAATGAAAAATTAAAAGGACAGTTCTATAAGCACTCAAATTGG-ACAA
31887666 AATAGACTATCATGCCAAACTAT
65 AATAGACTATCATGCCAAACTAT
* * * * * *
31887689 TCTGCCAAAATTTGATTTAATGAAAAATTAAGAGGATATTTTTATAAGCACTCAAATTGGGACAA
1 CCTGCCAAAATTTGATTGAATGAAAAATTAAAAGGACAGTTCTATAAGCACTCAAATT-GGACAA
* * * * * *
31887754 AATTGACTGTTAAGTCAAACTGT
65 AATAGACTATCATGCCAAACTAT
* * *
31887777 CCTGCTAAAATTT-ATTGAATGATAAATTAAAAGGACAGTTCTATAA-CTATTCAAATTAGGACA
1 CCTGCCAAAATTTGATTGAATGAAAAATTAAAAGGACAGTTCTATAAGC-ACTCAAATT-GGACA
*
31887840 AAATAGACTATCATGCCAAACTAC
64 AAATAGACTATCATGCCAAACTAT
* * ** ** * * * *
31887864 CCAGCCAAACTGCCCTACCAAAAATTGGTTAAATATAAATTTAAAAGGACATTTTTATAAGCATT
1 CCTGCCAAAAT----T-----TGATTGAATGAA---AAA-TTAAAAGGACAGTTCTATAAGCACT
* * * *
31887929 CAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
53 CAAATT-GGACAAAATAGACTATCATGCCAAACTAT
** * * * * *
31887965 CCAACCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGGGACAA
1 CCTGCCAAAATTTGATTGAATGAAAAATTAAAAGGACAGTTCTATAAGCACTCAAATT-GGACAA
31888030 AAT
65 AAT
31888033 GGGTTGTCAT
Statistics
Matches: 266, Mismatches: 61, Indels: 34
0.74 0.17 0.09
Matches are distributed among these distances:
86 1 0.00
87 65 0.24
88 115 0.43
89 5 0.02
91 1 0.00
92 6 0.02
97 7 0.03
100 3 0.01
101 62 0.23
102 1 0.00
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.29
Consensus pattern (87 bp):
CCTGCCAAAATTTGATTGAATGAAAAATTAAAAGGACAGTTCTATAAGCACTCAAATTGGACAAA
ATAGACTATCATGCCAAACTAT
Found at i:31888016 original size:88 final size:88
Alignment explanation
Indices: 31887867--31888053 Score: 239
Period size: 88 Copynumber: 2.1 Consensus size: 88
31887857 AAACTACCCA
* * * * * *
31887867 GCCAAACTGCCCTACCAAAAATTGGTTAAATATAAATTTAAAAGGACATTTTTATAAGCATTCAA
1 GCCAAACTACCCAACCAAAAATTGATTAAATACAAAATTAAAAGGACATTTCTATAAGCATTCAA
*
31887932 ATTGGGACGAAATGGACTGTCAT
66 ATTGGGACAAAATGGACTGTCAT
* * * *
31887955 GCCAAACTACCCAACCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
1 GCCAAACTACCCAACCAAAAATTGATTAAATACAAAATTAAAAGGACATTTCTATAAGCATTCAA
* **
31888020 TTTGGGACAAAATGGGTTGTCAT
66 ATTGGGACAAAATGGACTGTCAT
*
31888043 GTCAAACTACC
1 GCCAAACTACC
31888054 TTGCCAAACT
Statistics
Matches: 84, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
88 84 1.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (88 bp):
GCCAAACTACCCAACCAAAAATTGATTAAATACAAAATTAAAAGGACATTTCTATAAGCATTCAA
ATTGGGACAAAATGGACTGTCAT
Found at i:31888027 original size:276 final size:277
Alignment explanation
Indices: 31887500--31888032 Score: 647
Period size: 276 Copynumber: 1.9 Consensus size: 277
31887490 ACCAAACTCC
* * * * * * *
31887500 CCTGCCAAAATTTGATTTAATGTAAAATTAAGAGGACATTTCTATAAGTATTCAATTTGGGACGA
1 CCTGCCAAAATTTGATTGAATGTAAAATTAAAAGGACAGTTCTATAACTATTCAAATTAGGACAA
* * * * * * * * * * *
31887565 AATGGACTGTCTTGTCAAACGAACCTGCTAAACTGCCCTGCCAATATTTGCTTGAATGCAAAATT
66 AATAGACTATCATGCCAAACGAACCAGCCAAACTGCCCTACCAAAAATTGCTTAAATACAAAATT
* * * * * ** **
31887630 AAGAGGTCATTTCTGTTAGCATTTAAATTGGAACAAAATAGACTATCATGCCAAACTATTCTGCC
131 AAAAGGACATTTCTATAAGCATTCAAATTGGAACAAAATAGACTATCATGCCAAACTACCCAACC
* * *
31887695 AAAATTTGATTTAATGAAAAATTAAGAGGATATTTTTATAAGCACTCAAATTGGGACAAAATTGA
196 AAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCACTCAAATTGGGACAAAATTGA
31887760 CTGTTAAGTCAAACTGT
261 CTGTTAAGTCAAACTGT
*
31887777 CCTGCTAAAATTT-ATTGAATG-ATAAATTAAAAGGACAGTTCTATAACTATTCAAATTAGGACA
1 CCTGCCAAAATTTGATTGAATGTA-AAATTAAAAGGACAGTTCTATAACTATTCAAATTAGGACA
* * * * *
31887840 AAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTACCAAAAATTGGTTAAATATAAATT
65 AAATAGACTATCATGCCAAACGAACCAGCCAAACTGCCCTACCAAAAATTGCTTAAATACAAAAT
* * * * *
31887905 TAAAAGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAAC
130 TAAAAGGACATTTCTATAAGCATTCAAATTGGAACAAAATAGACTATCATGCCAAACTACCCAAC
* * *
31887970 CAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGGGACAAAAT
195 CAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCACTCAAATTGGGACAAAAT
31888033 GGGTTGTCAT
Statistics
Matches: 211, Mismatches: 44, Indels: 3
0.82 0.17 0.01
Matches are distributed among these distances:
275 1 0.00
276 198 0.94
277 12 0.06
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.30
Consensus pattern (277 bp):
CCTGCCAAAATTTGATTGAATGTAAAATTAAAAGGACAGTTCTATAACTATTCAAATTAGGACAA
AATAGACTATCATGCCAAACGAACCAGCCAAACTGCCCTACCAAAAATTGCTTAAATACAAAATT
AAAAGGACATTTCTATAAGCATTCAAATTGGAACAAAATAGACTATCATGCCAAACTACCCAACC
AAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCACTCAAATTGGGACAAAATTGA
CTGTTAAGTCAAACTGT
Found at i:31888052 original size:189 final size:188
Alignment explanation
Indices: 31887712--31888215 Score: 517
Period size: 189 Copynumber: 2.7 Consensus size: 188
31887702 GATTTAATGA
* * * * * * *
31887712 AAAATTAAGAGGATATTTTTATAAGCACTCAAATTGGGACAAAATTGACTGTTAAGTCAAACTGT
1 AAAATTAAGAGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTGTTATGCCAAACTGC
** * * *
31887777 CCTGCTAAAATTT-ATTGAATGATAAATTAAAAGGACAGTTCTATAA-CTATTCAAATTAGGACA
66 CCAACAAAAATTTGATTGAATGA-AAATTAAGAGGACATTTCTATAAGC-ATTCAAATTAGGACA
* * *
31887840 AAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTACCAAAAATTGGTTAAATAT
129 AAATAGACTATCATGCCAAACTACCCAGCCAAACTACCCTACCAAAAATTGCTTAAATAC
* * * *
31887900 AAATTTAAAAGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
1 AAAATTAAGAGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTGTTATGCCAAACTGC
* * *
31887965 CCAACCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGGGACAA
66 CCAACAAAAATTTGATTGAATG-AAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACAA
* ** * * ** * * * * * *
31888030 AATGGGTTGTCATGTCAAACTACCTTGCCAAACTACCCTGCTAATATTTGCTTGAATGC
130 AATAGACTATCATGCCAAACTACCCAGCCAAACTACCCTACCAAAAATTGCTTAAATAC
* * * * * * * * *
31888089 AAAATTAAGAGAACATTTCTATTAGCATTCATATTAGGACGACATGAACTGTTATACCAAATTGC
1 AAAATTAAGAGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTGTTATGCCAAACTGC
* * * * *
31888154 TCAAAAAAAATTTGATTGAATGAAAAATTAAGAGAACATTTCTGTAAGCATTAAAATTAGGA
66 CCAACAAAAATTTGATTGAATG-AAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGA
31888216 TGAAATGAAC
Statistics
Matches: 257, Mismatches: 56, Indels: 5
0.81 0.18 0.02
Matches are distributed among these distances:
188 64 0.25
189 191 0.74
190 2 0.01
ACGTcount: A:0.41, C:0.16, G:0.15, T:0.29
Consensus pattern (188 bp):
AAAATTAAGAGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTGTTATGCCAAACTGC
CCAACAAAAATTTGATTGAATGAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACAAA
ATAGACTATCATGCCAAACTACCCAGCCAAACTACCCTACCAAAAATTGCTTAAATAC
Found at i:31888233 original size:42 final size:42
Alignment explanation
Indices: 31888187--31888270 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
31888177 AAAATTAAGA
31888187 GAACATTTCTGTAAGCATTAAAATTAGGATGAAATGAACTGT
1 GAACATTTCTGTAAGCATTAAAATTAGGATGAAATGAACTGT
31888229 GAACATTTCTGTAAGCATTAAAATTAGGATGAAATGAACTGT
1 GAACATTTCTGTAAGCATTAAAATTAGGATGAAATGAACTGT
31888271 ACTGCCAAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.40, C:0.10, G:0.19, T:0.31
Consensus pattern (42 bp):
GAACATTTCTGTAAGCATTAAAATTAGGATGAAATGAACTGT
Found at i:31888566 original size:101 final size:101
Alignment explanation
Indices: 31888285--31888567 Score: 397
Period size: 101 Copynumber: 2.8 Consensus size: 101
31888275 CCAAATTTCC
* * * **
31888285 CAGCCAAACTACTCTGCCAAAATAAGATTGAATGCAAAATTAAGAAGACATTTATATAAGCATTC
1 CAGCCAAACTGCCCTACCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTATATAAGCATTC
* *
31888350 AAATTCGGACGAAAAGGAATGTCATGCCAAACTACT
66 AAATTCGGACGAAATGGAATGCCATGCCAAACTACT
* * * *
31888386 CAGCCAAACTGCCCTACCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTC
1 CAGCCAAACTGCCCTACCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTATATAAGCATTC
* * *
31888451 AAATTGGGACGAAATGGACTGCCATGCGAAACTAC-
66 AAATTCGGACGAAATGGAATGCCATGCCAAACTACT
* *
31888486 CTAGCCAAACTGCCCTACCAAAATTTGATTGAATGCAAAATTAAGAAGATATTTCTATAAGCATT
1 C-AGCCAAACTGCCCTACCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTATATAAGCATT
*
31888551 CAATTTCGGACGAAATG
65 CAAATTCGGACGAAATG
31888568 TACGTCATGT
Statistics
Matches: 160, Mismatches: 21, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
100 1 0.01
101 159 0.99
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.25
Consensus pattern (101 bp):
CAGCCAAACTGCCCTACCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTATATAAGCATTC
AAATTCGGACGAAATGGAATGCCATGCCAAACTACT
Found at i:31888650 original size:86 final size:87
Alignment explanation
Indices: 31888489--31888822 Score: 275
Period size: 87 Copynumber: 3.8 Consensus size: 87
31888479 AAACTACCTA
* *** * * *
31888489 GCCAAACTGCCCTACCAAAATTTGATTGAATGCAAAATTAAGAAGATATTTCTATAAGCATTCAA
1 GCCAAACTACCCTACTTCAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAA
* *
31888554 TTTCGGACGAAAT-GTAC-GTCAT
66 ATT-GGACGAAATAG-ACTCTCAT
* * * * * *
31888576 GTCAAACTACCCTA-TT-AATATTGCTTGAATGCACAGTTAAGAGGACATTTCTATTAGAATTTA
1 GCCAAACTACCCTACTTCAAT-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCA
31888639 AATTGGAACGAAATAGACTCTCAT
65 AATTGG-ACGAAATAGACTCTCAT
* * * *
31888663 GCCAAACTACTCTACTTCAATTTGATTTATTGCAAAATTAAGAGGACATTTCTATAAGTATTCAA
1 GCCAAACTACCCTACTTCAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAA
* * * * *
31888728 ATTGAGACAAAATTGATTGTCAA
66 ATTG-GACGAAATAGACTCTCAT
* * * * * * * *
31888751 GCCAAACTACCCTGC-TAAAATTGATTGAGTG-ATAAATTAAGAGAAAATTTCAATAAGCATTCA
1 GCCAAACTACCCTACTTCAATTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGAATTCA
31888814 AATTTGGAC
65 AA-TTGGAC
31888823 ATTTTTAAGA
Statistics
Matches: 199, Mismatches: 39, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
85 5 0.03
86 48 0.24
87 72 0.36
88 70 0.35
89 4 0.02
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (87 bp):
GCCAAACTACCCTACTTCAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAA
ATTGGACGAAATAGACTCTCAT
Found at i:31888714 original size:88 final size:84
Alignment explanation
Indices: 31888507--31888822 Score: 251
Period size: 88 Copynumber: 3.6 Consensus size: 84
31888497 GCCCTACCAA
* * * * *
31888507 AATTTGATTGAATGCAAAATTAAGAAGATATTTCTATAAGCATTCAATTTCGGACGAAATGTACG
1 AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAAATT-GGACGAAATGTACC
*
31888572 TCATGTCAAACTACCCTATT
65 TCATGCCAAACTACCCTATT
* * * * *
31888592 AATATTGCTTGAATGCACAGTTAAGAGGACATTTCTATTAGAATTTAAATTGGAACGAAATAG-A
1 AAT-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAAATTGG-ACGAAAT-GTA
*
31888656 CTCTCATGCCAAACTACTCTACTT
63 C-CTCATGCCAAACTACCCTA-TT
* * * *
31888680 CAATTTGATTTATTGCAAAATTAAGAGGACATTTCTATAAGTATTCAAATTGAGACAAAAT-TGA
1 -AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAAATTG-GACGAAATGT-A
** * * *
31888744 TTGTCAAGCCAAACTACCCTGCTA
63 -CCTCATGCCAAACTACCCT-ATT
* * * * * *
31888768 AAATTGATTGAGTG-ATAAATTAAGAGAAAATTTCAATAAGCATTCAAATTTGGAC
1 AATTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGAATTCAAA-TTGGAC
31888823 ATTTTTAAGA
Statistics
Matches: 184, Mismatches: 34, Indels: 24
0.76 0.14 0.10
Matches are distributed among these distances:
85 5 0.03
86 48 0.26
87 59 0.32
88 68 0.37
89 4 0.02
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32
Consensus pattern (84 bp):
AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAAATTGGACGAAATGTACCT
CATGCCAAACTACCCTATT
Found at i:31889074 original size:101 final size:100
Alignment explanation
Indices: 31888931--31889220 Score: 321
Period size: 101 Copynumber: 2.9 Consensus size: 100
31888921 CAAGCTACCT
* * * * *
31888931 AGCCAAACTGTCCTGCTAATATTTTGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAA-AATTTGTTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCA
*
31888996 AATTGGAACAAAATGGACTATCATG-CAAAACTAACC
65 AATTGGAACGAAATGGACTATCATGTC-AAACTAACC
* * * * *
31889032 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATGAGTAATCA
1 AGCCAAACTGCCCTGCCAAAATTTG-TTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCA
* * * * **
31889097 ATTTGGAATGAAATGGATTGTCATGTCAAACTTCCC
65 AATTGGAACGAAATGGACTATCATGTCAAACTAACC
* * * * * * *
31889133 TGACAAACTGCCTTGCCAATATTTGCTTCAATGCAAAATTAAGAGCACATTTATATTAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTG-TTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCA
31889198 AATTGGAACGAAATGGACTATCA
65 AATTGGAACGAAATGGACTATCA
31889221 CTACTCTACC
Statistics
Matches: 155, Mismatches: 32, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
100 5 0.03
101 149 0.96
102 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30
Consensus pattern (100 bp):
AGCCAAACTGCCCTGCCAAAATTTGTTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCAA
ATTGGAACGAAATGGACTATCATGTCAAACTAACC
Found at i:31889591 original size:100 final size:101
Alignment explanation
Indices: 31889302--31891944 Score: 1232
Period size: 101 Copynumber: 27.0 Consensus size: 101
31889292 TTGATAGTCA
* *
31889302 AGCCAAACTGCCCTG-CTAAACTTGATTGAATG-ATAAATTAAGAGGACATTTCTATAAGCATTC
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGCATTC
* * **
31889365 AAATT-GAGACGAAATGAACTGTCTTGTTAAACTACCC
65 AAATTGGA-ACGAAATGGACTGTCATGCCAAACTACCC
* * *
31889402 AACCAAACTGCCCTGCCAAAATTTTG-TTGAATG-AAAATTTAAGAGGGCATTTTTATAAGCATT
1 AGCCAAACTGCCCTGCCAAAA-TTTGATTGAATGCAAAA-TTAAGAGGACATTTCTATAAGCATT
* * *
31889465 TAAATT-GAGACGAAATAGACTGTCATGCCAAACTACCT
64 CAAATTGGA-ACGAAATGGACTGTCATGCCAAACTACCC
* ** * *
31889503 AGCCAAATTGCCCTGCCAAAATTTGATTGAATGC-ACTTTAAGAGGACATTTTTATAGGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* *
31889567 AATTGGAATGAAATGGACTATCATGCCAAACTACCC
66 AATTGGAACGAAATGGACTGTCATGCCAAACTACCC
* * * * * * **
31889603 AGCAAAACTGCGCTACCAAAA-TTAATTGAATGCAAAAATAATAGGGTATTTCTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * * *
31889667 AATTGGGACAAAATGG---GCCATGCAAAACTACCC
66 AATTGGAACGAAATGGACTGTCATGCCAAACTACCC
* * * * * *
31889700 AACCAAACTACCTTGTCAAAATTTGATTGAATGCAAAATTAACAGGACATTTCTATAAGTATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* *
31889765 ATTTGGCAA-GAAATGGACTGTCATGTCAAACTACCC
66 AATTGG-AACGAAATGGACTGTCATGCCAAACTACCC
* * * * * * * * * *
31889801 TGCCAAATTGCCCT-TCAAATATTTGCTTGAGTGCAAAATTAAGATGACATTTTTATTAGCTTTT
1 AGCCAAACTGCCCTGCCAAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* *
31889865 AAATTAGAACGATATGGACTGTCATGCCAAACT----
65 AAATTGGAACGAAATGGACTGTCATGCCAAACTACCC
* * *
31889898 ------ACT---CTGCCAAAATTTGATTTAATGCAAAATTAAGAGAACATTTCTATAAGTATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * *
31889954 AA-TGTGAACTAAAT----TG-AATG-----TTA---
66 AATTG-GAACGAAATGGACTGTCATGCCAAACTACCC
* *** *
31889977 AGCCAAACTGCCCTGCTAAAA-TTGATTGAATAATAAATTAAGAGCACATTTCTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
*
31890041 AATTGGGAA-AAAATGGAC-GATCATGCCAAACTACCC
66 AATT-GGAACGAAATGGACTG-TCATGCCAAACTACCC
*** * * *
31890077 AGCCAAACTGTAATGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * * * * *
31890142 AATTGGGATGAAATGGATTGTCATGCAAAACTTCCT
66 AATTGGAACGAAATGGACTGTCATGCCAAACTACCC
* * * * * * *
31890178 AGCCAAACTGCCTTGCCAAAA-TTGATTCAAAGCAAAATTAAGAAGAGATTTATATAAACATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * *
31890242 AATTGTG-ACAAAATGGACAGTCATGCAAAACTACCC
66 AATTG-GAACGAAATGGACTGTCATGCCAAACTACCC
* * * * * *** * * * * * *
31890278 AACAAAACTACCCAG-CATTAAATTTGGGA-TGAAATGGATTCTCACGA-CAAACTTCCCTACCA
1 AGCCAAACTGCCCTGCCA--AAATTT--GATTG-AATGCAAAATTAAGAGGACA-TT-TCTA-TA
* *** * ** * * * * *
31890340 A-TATT-TTCTT-GAATGCAAATTTAATAGAACAAT-CC-TATTA-GC
58 AGCATTCAAATTGGAACG-AAATGGACT-G-TC-ATGCCAAACTACCC
** * * * * * * *
31890382 ATTCAAATTG---GGACAAAA--TGAATTGTTATTTCAAACCACTT-TGCA--ACAATTT-TGT-
1 AGCCAAACTGCCCTGCCAAAATTTG-ATTG--AATGCAAA--A-TTAAG-AGGAC-ATTTCTATA
* * ** ** * * *
31890437 TGAATGAATAATTAAGAGAAC-ATTTCGGTAAGCAT-TAAAATTGGGGCGAAA-TGGACTGTC
58 AGCATTCA-AATT--G-GAACGAAAT-GG--A-C-TGT--CA-T---GCCAAACT--AC--CC
* * * * * *
31890497 ATTCCAAACTACTCTGACAAAATATGATTTAATGC---------A--ACATTTCTATAAGCATTC
1 A-GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
*
31890551 AAATT-GAGACAAAATGGACTGTCATGCCAAACTACCC
65 AAATTGGA-ACGAAATGGACTGTCATGCCAAACTACCC
* * * * * * * *
31890588 AGCCAAATTACCCTG-CAATATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGAATTTA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * * *
31890652 AATGGGATA--AAATAGTCTGTCATTCCAAACTACCC
66 AATTGGA-ACGAAATGGACTGTCATGCCAAACTACCC
* * * * * *
31890687 AGCCAAATTGCCCTACCAAAA-TTGATTGAAAGTAAAAATAAGAGGACATTTATATCAA-CATTC
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTAT-AAGCATTC
* * *
31890750 AAATTGCG-ACAAAATGGACTATCATGCAAAACTACCC
65 AAATTG-GAACGAAATGGACTGTCATGCCAAACTACCC
* * * *
31890787 TA-CCAAACTGCCCTGCCAAAATTTAATTAAATGGAAAATTAAGAGGGCATTTCTATAAGCATTC
1 -AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * * * *
31890851 -AATTTGAGACGAAATGGATTGTTATGTCATACTGCCC
65 AAATTGGA-ACGAAATGGACTGTCATGCCAAACTACCC
* * * ** * **
31890888 TA-ACAAATTGCCCTGCCAATATTTTCTTGAATGCAAAATAAAGAAAACATTTCTATTAA-CATT
1 -AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA-TAAGCATT
* *
31890951 CAAATTGGAACGAAATGGACTGTTATGTC--A-T----
64 CAAATTGGAACGAAATGGACTGTCATGCCAAACTACCC
* * *
31890982 A--C-TA-T-TCCT-CCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
*
31891041 AATTGGGAA-AAAATGGACT-T--T----AA-T----
66 AATT-GGAACGAAATGGACTGTCATGCCAAACTACCC
* * * * * * *
31891065 -GCCAAGCTACCCTGCCAATATTTGGTTGAATGCAAATTTAAAAGGACATTTTTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * *
31891129 AATTGGGACAAAATGGA-TAGTCATGCAAAACTACCC
66 AATTGGAACGAAATGGACT-GTCATGCCAAACTACCC
* * *
31891165 AACCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGTATTC-
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * * *
31891229 AATTTGAGACGAAATGGATTGTCATGTCAAACTAGCC
66 AATTGGA-ACGAAATGGACTGTCATGCCAAACTACCC
* * * * * *
31891266 TGCCAAATTGCCCTGCCAACATTTGCTTGAACT-CAAAATTAAGAGAACATTTCTATTAGCATTC
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAA-TGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * *
31891330 AAATTGGGACGAAATAGACTGTTATGCCAAA-T----
65 AAATTGGAACGAAATGGACTGTCATGCCAAACTACCC
* * * * *
31891362 -----TACT---CTACCAAAAATTTGATTTAATGAAAAATTAAAAGGACATTTCTATAAGCATTC
1 AGCCAAACTGCCCTGCC-AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
*
31891419 AAATTGGGAA-GAAATTGAC--T-AT------C-A---
65 AAATT-GGAACGAAATGGACTGTCATGCCAAACTACCC
* * * * ** * *
31891443 AGCCAAACTGTCTTGCTAAAA-TTGGTTGAATGTTAAATTAATAGGACATTTCTATAAACATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * * *
31891507 AATTGGGACGAAAAGGACTGTCAAGTCAAACTACTCC
66 AATTGGAACGAAATGGACTGTCATGCCAAACTAC-CC
* * *
31891544 -TCCAAACTGCACTGCCAAAATTTTG-TTGAATG-ATAAATTAAAAGGACATTTCTATAAGCATT
1 AGCCAAACTGCCCTGCCAAAA-TTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGCATT
* * *
31891606 CAAATT-GAGACGAAAAGGACTGTTATGCCAAACTACTC
64 CAAATTGGA-ACGAAATGGACTGTCATGCCAAACTACCC
** * * *
31891644 AGCCAAACTGCTTTGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * * *
31891709 AATTGGGACAAAATTGACTGTCATGCGAAACTACCC
66 AATTGGAACGAAATGGACTGTCATGCCAAACTACCC
* * *
31891745 AGCCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAATTAATAAGACATTTCTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * * * * * *
31891810 ATTTCGTACAAAATGTACTATCATGTCAAACTACCC
66 AATTGGAACGAAATGGACTGTCATGCCAAACTACCC
* * *** * * * * * * *
31891846 TGCCAAACTACCCTATTAATATTTGCTTGAATGCAAAGTTAAAAGGACATTTCTATTAGAATTTA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* *
31891911 AATTGGGACGAAATGGACTCTCATGCCAAACTAC
66 AATTGGAACGAAATGGACTGTCATGCCAAACTAC
31891945 TCTACTTAAA
Statistics
Matches: 1922, Mismatches: 427, Indels: 387
0.70 0.16 0.14
Matches are distributed among these distances:
78 1 0.00
83 5 0.00
84 3 0.00
85 4 0.00
86 9 0.00
87 104 0.05
88 175 0.09
89 81 0.04
90 17 0.01
91 8 0.00
92 4 0.00
93 3 0.00
94 5 0.00
95 3 0.00
96 3 0.00
97 33 0.02
98 57 0.03
99 93 0.05
100 330 0.17
101 846 0.44
102 37 0.02
103 8 0.00
104 30 0.02
105 15 0.01
106 14 0.01
107 7 0.00
110 2 0.00
111 1 0.00
112 1 0.00
115 2 0.00
116 6 0.00
118 3 0.00
119 7 0.00
120 3 0.00
121 2 0.00
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.29
Consensus pattern (101 bp):
AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
AATTGGAACGAAATGGACTGTCATGCCAAACTACCC
Found at i:31890069 original size:87 final size:87
Alignment explanation
Indices: 31889816--31890083 Score: 220
Period size: 88 Copynumber: 3.0 Consensus size: 87
31889806 AATTGCCCTT
* * * * * * * ** * *
31889816 CAAATATTTGCTTGAGTGCAAAATTAAGATG-ACATTTTTATTAGCTTTTAAATTAGAACGATAT
1 CAAA-ATTTGATTGAATGAAAAATTAAGA-GAACATTTCTATAAGCATTCAAATGGGAACAAAAT
*
31889880 GGACTGTCATGCCAAACTACTCTGC
64 GGAC-GTCATGCCAAACTACCCTGC
* * * * *
31889905 CAAAATTTGATTTAATGCAAAATTAAGAGAACATTTCTATAAGTATTCAAATGTGAACTAAATTG
1 CAAAATTTGATTGAATGAAAAATTAAGAGAACATTTCTATAAGCATTCAAATGGGAAC-AAAATG
* * * * *
31889970 AATGTTAAGCCAAACTGCCCTGC
65 GACGTCATGCCAAACTACCCTGC
* *
31889993 TAAAA-TTGATTGAAT-AATAAATTAAGAGCACATTTCTATAAGCATTCAAATTGGGAA-AAAAT
1 CAAAATTTGATTGAATGAA-AAATTAAGAGAACATTTCTATAAGCATTCAAA-TGGGAACAAAAT
*
31890055 GGACGATCATGCCAAACTACCCAGC
64 GGACG-TCATGCCAAACTACCCTGC
31890080 CAAA
1 CAAA
31890084 CTGTAATGCC
Statistics
Matches: 141, Mismatches: 33, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
86 8 0.06
87 58 0.41
88 67 0.48
89 8 0.06
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.30
Consensus pattern (87 bp):
CAAAATTTGATTGAATGAAAAATTAAGAGAACATTTCTATAAGCATTCAAATGGGAACAAAATGG
ACGTCATGCCAAACTACCCTGC
Found at i:31890285 original size:13 final size:13
Alignment explanation
Indices: 31890267--31890291 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31890257 GACAGTCATG
31890267 CAAAACTACCCAA
1 CAAAACTACCCAA
31890280 CAAAACTACCCA
1 CAAAACTACCCA
31890292 GCATTAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.40, G:0.00, T:0.08
Consensus pattern (13 bp):
CAAAACTACCCAA
Found at i:31891088 original size:88 final size:89
Alignment explanation
Indices: 31890898--31891145 Score: 283
Period size: 88 Copynumber: 2.8 Consensus size: 89
31890888 TAACAAATTG
** * **
31890898 CCCTGCCAATATTTTCTTGAATGCAAAATAAAGAAAACATTTCTATTAA-CATTCAAATT-GGAA
1 CCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTA-TAAGCATTCAAATTGGGAA
* *
31890961 CGAAATGGACTGTTATGTCATACTAT
65 -AAAATGGACTGTTATGCCATACTAT
* * *
31890987 TCCT-CCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAAA
1 CCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAAA
31891051 AAATGGACT-TTAATGCCA-AGCTA-
66 AAATGGACTGTT-ATGCCATA-CTAT
* * * * *
31891074 CCCTGCCAATATTTGGTTGAATGCAAATTTAAAAGGACATTTTTATAAGCATTCAAATTGGGACA
1 CCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAAA
31891139 AAATGGA
66 AAATGGA
31891146 TAGTCATGCA
Statistics
Matches: 136, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
87 9 0.07
88 120 0.88
89 7 0.05
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (89 bp):
CCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAAA
AAATGGACTGTTATGCCATACTAT
Found at i:31891182 original size:378 final size:377
Alignment explanation
Indices: 31890687--31893208 Score: 1212
Period size: 378 Copynumber: 6.6 Consensus size: 377
31890677 CAAACTACCC
* * * * * * * *
31890687 AGCCAAATTGCCCTACCAAAATTGATTGAAAGTAAAAATAAGAGGACATTTATATCAACATTCAA
1 AGCCAAACTACCCTGCCAAAATTGGTTGAATGTCAAATTAAAAGGACATTTATAT-AACATTCAA
* *
31890752 ATTGCGACAAAATGGACTA-TCATGCAAAACTACCCTACCAAACTGCCCTGCCAAAATTTAATTA
65 ATTGGGACAAAATGGACTAGTCATGCAAAACTACCC-ACCAAACTGCCCTGCCAAAATTTAATTG
* *
31890816 AATGGAAAATTAAGAGGGCATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGTCAT
129 AATGGAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGTCAA
* *
31890881 ACT-GCCCTAACAAATTGCCCTGCCAATATTTTCTTGAA-TGCAAAATAAAGAAAACATTTCTAT
194 ACTAG-CCTAACAAATTGCCCTGCCAACATTTGCTTGAACT-CAAAATAAAGAAAACATTTCTAT
* * * *
31890944 TAACATTCAAATTGGAACGAAATGGACTGTTATGTCATACTATTCCT-CC-AAAATTTGATTGAA
257 TAACATTCAAATTGGAACGAAATAGACTGTTATGCCAAACTACT-CTACCAAAAATTTGATTGAA
* *
31891007 TGAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGGACT-TTA
321 TGAAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGGACTATCA
* * *
31891063 ATGCCAAGCTACCCTGCCAATATTTGGTTGAATG-CAAATTTAAAAGGACATTTTTATAAGCATT
1 A-GCCAAACTACCCTGCCAA-AATTGGTTGAATGTCAAA-TTAAAAGGACATTTATATAA-CATT
* *
31891127 CAAATTGGGACAAAATGGA-TAGTCATGCAAAACTACCCAACCAAACTACCCTGCCAAAATTTGA
62 CAAATTGGGACAAAATGGACTAGTCATGCAAAACTACCC-ACCAAACTGCCCTGCCAAAATTTAA
* * *
31891191 TTGAATGCAAAATTAAGAGGACATTTCTATAAGTATTCAATTTGAGACGAAATGGATTGTCATGT
126 TTGAATGGAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGT
** * *
31891256 CAAACTAGCCTGCCAAATTGCCCTGCCAACATTTGCTTGAACTCAAAATTAAGAGAACATTTCTA
191 CAAACTAGCCTAACAAATTGCCCTGCCAACATTTGCTTGAACTCAAAATAAAGAAAACATTTCTA
* * * *
31891321 TTAGCATTCAAATTGGGACGAAATAGACTGTTATGCCAAATTACTCTACCAAAAATTTGATTTAA
256 TTAACATTCAAATTGGAACGAAATAGACTGTTATGCCAAACTACTCTACCAAAAATTTGATTGAA
* *
31891386 TGAAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGAAGAAATTGACTATCA
321 TGAAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGGACTATCA
** * * * * *
31891443 AGCCAAACTGTCTTGCTAAAATTGGTTGAATGTTAAATTAATAGGACATTTCTATAAACATTCAA
1 AGCCAAACTACCCTGCCAAAATTGGTTGAATGTCAAATTAAAAGGACATTTATAT-AACATTCAA
* * * **
31891508 ATTGGGACGAAAA-GGACT-GTCAAGTC-AAACTACTCCTCCAAACTGCACTGCCAAAATTTTGT
65 ATTGGGAC-AAAATGGACTAGTCATG-CAAAACTAC-CCACCAAACTGCCCTGCCAAAATTTAAT
* * * * *
31891570 TGAAT-GATAAATTAAAAGGACATTTCTATAAGCATTCAAATTGAGACGAAAAGGACTGTTATGC
127 TGAATGGA-AAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGT
* * ** * * * * **
31891634 CAAACTA--CTCAGCCAAACTGCTTTGCCAAAATTTGGTTGAA-TGCAAATTTAAGAGGACATTT
191 CAAACTAGCCT-A-ACAAATTGCCCTGCCAACATTTGCTTGAACT-CAAAATAAAGAAAACATTT
* * * * * * *
31891696 TTA-TAAGCATTCAAATTGGGACAAAATTGACTGTCATGCGAAACTAC-CCAGCCAAACTGCCCT
253 CTATTAA-CATTCAAATTGGAACGAAATAGACTGTTATGCCAAACTACTCTA-CC-AA-------
* * * * *
31891759 GCCCAAATTTGATTGAATGCAAAATTAATAA-GACATTTCTATAAGCATTCAATTTCGTACAAAA
308 ----AAATTTGATTGAATGAAAAATTAA-AAGGACATTTCTATAAGCATTCAAATTGGGAAAAAA
*
31891823 TGTACTATCA
368 TGGACTATCA
* * *
31891833 TGTCAAACTACCCTGCCAAACTACCCTATTAATATTTGCTTGAATG-CAAAGTTAAAAGGACATT
1 AGCCAAACTACCCTG---------CC-A--AA-A-TTGGTTGAATGTCAAA-TTAAAAGGACATT
* * * * * * *
31891897 TCTATTAGA-ATTTAAATTGGGACGAAATGGACT-CTCATGCCAAACTA--C-TC-TACT----T
51 TATA-TA-ACATTCAAATTGGGACAAAATGGACTAGTCATGCAAAACTACCCACCAAACTGCCCT
* * ** * * * * *
31891952 ----AAATTTGATTTAATACAAAATTAAGAAGACAATTCTATAAGTATTCAAATTGGGACG-AA-
114 GCCAAAATTTAATTGAATGGAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAAT
* * * * * ** * *
31892011 --ATTGAT-TGTC--A--AG-C---CAAACTGCCTTGCTAA-AATTAATTGAA-TGATAAATTAA
179 GGATTGTTATGTCAAACTAGCCTAACAAATTGCCCTGCCAACATTTGCTTGAACTCA-AAATAAA
* * * *
31892063 GAGAAA-ATTTCTA-TAAGCATTCAAATTGGGACGAAATTGACTGTCATGCCAAACTAC-CAAGC
243 GA-AAACATTTCTATTAA-CATTCAAATTGGAACGAAATAGACTGTTATGCCAAACTACTCTA-C
* * * * * *
31892125 CAAACTGCCCTGCTAATATTTGGTTGAATGCAAATTTAAGAGGATATTTTTATAAGCATTCAAAT
305 C-AA----------AA-ATTTGATTGAATGAAAAATTAAAAGGACATTTCTATAAGCATTCAAAT
* *
31892190 TGGGACAAAATTGACTGTCATGCGAAACTACCC
358 TGGG--AAAA---A-----ATG-G--ACTATCA
* * * * *
31892223 AGTCAAACTGCCCTGCCCAAATTTGATTGAATG-CAAAATTAATAA-GACATTTCTATAAGCATT
1 AGCCAAACTACCCTG-CCAAAATTGGTTGAATGTC-AAATTAA-AAGGACATTTATATAA-CATT
* * * * * * *** * *
31892286 CAATTTCGTACAAAATGTACTA-TCATGTC-AAACTACCCTGCCAAACTACCCTATTAATATTTG
62 CAAATTGGGACAAAATGGACTAGTCATG-CAAAACTACCC-ACCAAACTGCCCTGCCAAAATTTA
* * * * * * * * * * * *
31892349 CTTGAATGCAAAGTTAAAAGGACATTTCTATTAGAATTTAAATTGGGACGAAATGGACTCTCATG
125 ATTGAATGGAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATG
* * * * * *
31892414 CCAAACTA-CTCT-AC----T----T---AA-ATTTGATTTAA-TACAAAATTAAGAAGACAATT
190 TCAAACTAGC-CTAACAAATTGCCCTGCCAACATTTGCTTGAACT-CAAAATAAAGAAAACATTT
* * * * * * * ** * *
31892464 CTA-TAAGTATTCAAATTGGGACGAAATTGATTGTCAAGCCAAACTGC-CTTGCTAAAA-TTAAT
253 CTATTAA-CATTCAAATTGGAACGAAATAGACTGTTATGCCAAACTACTCTACCAAAAATTTGAT
* * * * *
31892526 TAAATGATAAATTAAGAGAAAATTTCTATAAGCATTCAAATTGGGACGAAATTGACTGTCATGCC
317 TGAATGAAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGA--AAA---A-----ATG--
* *
31892591 AAACTACCA
370 -GACTATCA
* * * * * * *
31892600 AGCCAAACTGCCCTGCTAATATTTGGTTGAATG-CAAATTTAAGAGGAAATTTTTATAAGTATTC
1 AGCCAAACTACCCTGCCAA-AATTGGTTGAATGTCAAA-TTAAAAGGACATTTATATAA-CATTC
* * ** * * *
31892664 ATATTGGAATGAAATGGACT-GT-ATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGAT
63 AAATTGGGACAAAATGGACTAGTCATGCAAAACTACCCA-CCAAACTGCCCTGCCAAAATTTAAT
* * * * *
31892727 TGAATGCAAAATTAAGAGGACATTTCTATGAGTAATCAATTTG-GAACGAAATGGATTGTCATGT
127 TGAATGGAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGAG-ACGAAATGGATTGTTATGT
* ** * * * * **
31892791 C-AA-TATTCTCTAGGAAACTGCCCTGCCAATATTTGCTTCAA-TACAAAATTAAGAGCACATTT
191 CAAACTA-GC-CTAACAAATTGCCCTGCCAACATTTGCTTGAACT-CAAAATAAAGAAAACATTT
** * * * * *
31892853 CTATTAGTATTCAAATTGGGACGGAAA-GGACTGTCATGCCAAATTACTCTGCC-AAAATTTGAT
253 CTATTAACATTCAAATTGGAAC-GAAATAGACTGTTATGCCAAACTACTCTACCAAAAATTTGAT
* * * * ** *
31892916 TTAAT-ACAAAATTAAGAGGACATTTCTATAAGCATTTAAAATGGGACGAAATTGA-TAGTCA
317 TGAATGA-AAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGGACTA-TCA
* * * * * *
31892977 AGCCAAACTGCTCTGCTAAAATTGATTGAATGAT-AAATTAAGAGGACATTTCTATAAGCATTCA
1 AGCCAAACTACCCTGCCAAAATTGGTTGAATG-TCAAATTAAAAGGACATTTATATAA-CATTCA
* * * *
31893041 AATTGAGG-CGAAATGGACTA-TCTTGCCAAAA-TACCCAACCAAACTGTCCTGCCAAAATTTTA
64 AATTG-GGACAAAATGGACTAGTCATG-CAAAACTACCC-ACCAAACTGCCCTGCCAAAATTTAA
* * * * * * * * *
31893103 TTGACTGCAAATTTAAGAGGACATTTTTATAAGAATT-TATATTGAGATGAAATGGACTGTCATG
126 TTGAATGGAAAATTAAGAGGACATTTCTATAAGCATTCAAT-TTGAGACGAAATGGATTGTTATG
* * * *
31893167 CCAAACTA-AC-AAGCCAAATTGCCCTGCCAAAATTTGATTGAA
190 TCAAACTAGCCTAA--CAAATTGCCCTGCCAACATTTGCTTGAA
31893209 TGCACTTTAA
Statistics
Matches: 1704, Mismatches: 290, Indels: 303
0.74 0.13 0.13
Matches are distributed among these distances:
374 2 0.00
375 7 0.00
376 161 0.09
377 448 0.26
378 490 0.29
379 103 0.06
380 5 0.00
381 3 0.00
382 8 0.00
383 1 0.00
384 1 0.00
385 2 0.00
386 4 0.00
387 7 0.00
388 3 0.00
389 66 0.04
390 188 0.11
391 117 0.07
392 2 0.00
394 3 0.00
395 4 0.00
397 1 0.00
398 1 0.00
399 5 0.00
400 3 0.00
401 1 0.00
402 3 0.00
403 8 0.00
404 55 0.03
405 2 0.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.29
Consensus pattern (377 bp):
AGCCAAACTACCCTGCCAAAATTGGTTGAATGTCAAATTAAAAGGACATTTATATAACATTCAAA
TTGGGACAAAATGGACTAGTCATGCAAAACTACCCACCAAACTGCCCTGCCAAAATTTAATTGAA
TGGAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGTCAAAC
TAGCCTAACAAATTGCCCTGCCAACATTTGCTTGAACTCAAAATAAAGAAAACATTTCTATTAAC
ATTCAAATTGGAACGAAATAGACTGTTATGCCAAACTACTCTACCAAAAATTTGATTGAATGAAA
AATTAAAAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGGACTATCA
Found at i:31892008 original size:88 final size:87
Alignment explanation
Indices: 31891846--31892120 Score: 281
Period size: 88 Copynumber: 3.1 Consensus size: 87
31891836 CAAACTACCC
* * * * *
31891846 TGCCAAACTACCCTA-TTAATATTTGCTTGAATGCAAAGTTAA-AAGGACATTTCTATTAGAATT
1 TGCCAAACTA-CCTACTTAA-ATTTGATTGAATACAAAATTAAGAA-GACAATTCTATAAGAATT
* * *
31891909 TAAATTGGGACGAAATGGACTCTCA
63 CAAATTGGGACGAAATTGACTGTCA
* *
31891934 TGCCAAACTACTCTACTTAAATTTGATTTAATACAAAATTAAGAAGACAATTCTATAAGTATTCA
1 TGCCAAACTAC-CTACTTAAATTTGATTGAATACAAAATTAAGAAGACAATTCTATAAGAATTCA
*
31891999 AATTGGGACGAAATTGATTGTCA
65 AATTGGGACGAAATTGACTGTCA
* * * * * * * *
31892022 AGCCAAACTGCCTTGC-TAAAATTAATTGAATGA-TAAATTAAG-AGAAAATTTCTATAAGCATT
1 TGCCAAACTACC-TACTTAAATTTGATTGAAT-ACAAAATTAAGAAGACAA-TTCTATAAGAATT
31892084 CAAATTGGGACGAAATTGACTGTCA
63 CAAATTGGGACGAAATTGACTGTCA
31892109 TGCCAAACTACC
1 TGCCAAACTACC
31892121 AAGCCAAACT
Statistics
Matches: 158, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
86 5 0.03
87 68 0.43
88 79 0.50
89 6 0.04
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.31
Consensus pattern (87 bp):
TGCCAAACTACCTACTTAAATTTGATTGAATACAAAATTAAGAAGACAATTCTATAAGAATTCAA
ATTGGGACGAAATTGACTGTCA
Found at i:31892151 original size:478 final size:475
Alignment explanation
Indices: 31890625--31899451 Score: 4645
Period size: 478 Copynumber: 18.5 Consensus size: 475
31890615 GAATGCAAAT
* * * ** * * * *
31890625 TTAAGAGGACATTTTTATAAGAATTTAAA-TGGGATAAAATAGTCTGTCATTCCAAACTACCCAG
1 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCAAG
* * * * ** *
31890689 CCAAATTGCCCTACCAAAA-TTGATTGAAAGTAAAAATAAGAGGACATTTATATCAA-CATTCAA
66 CCAAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAGGACATTTTTAT-AAGCATTCAA
* * * * *
31890752 ATTGCGACAAAATGGACTATCATGCAAAACTACCCTA-CCAAACTGCCCTGCCAAAATTTAATTA
130 ATTGGGACGAAATGGACTGTCATGC-AAACTACCC-AGCCAAACTGCCCTGCC-AAATTTGATTG
* * * * * * * * *
31890816 AATGGAAAATTAAGAGGGCATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGTCAT
192 AATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAA
* ** * * * **
31890881 ACTGCCCTAACAAATTGCCCTGCCAATATTTTCTTGAATGCAAAA-TAAAGAAAACATTTCTATT
257 ACTACCCTGCCAAACTGCCCTACCAATATTTGCTTGAATGCAAAATTAAA-AGGACATTTCTATT
* * * * * * * *
31890945 AACATTCAAATTGGAACGAAATGGACTGTTATGTCATACTATTCCTCCAAAATTTGATTGAATGA
321 AGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACT-CTGCTAAATTTGATTGAAT-A
** *
31891010 -AAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGGACTT-T-AATGCCAAGC
384 CAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGA-TTGTCAA-GCCAAAC
* * * * * *
31891072 TACCCTGCCAATATTTGGTTGAATGCA-AAT
447 TGCCTTGCTAA-AATTGATTGAATG-ATAAA
* * * *
31891102 TTAAAAGGACATTTTTATAAGCATTCAAATTGGGACAAAATGGA-TAGTCATGCAAAACTACCCA
1 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACT-GTCATGCCAAACTA-CCA
* * * *
31891166 A-CCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGTATTCA
64 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCA
* * * * * * *
31891230 ATTTGAGACGAAATGGATTGTCATGTCAAACTAGCCTGCCAAATTGCCCTGCCAACATTTGCTTG
129 AATTGGGACGAAATGGACTGTCATG-CAAACTACCCAGCCAAACTGCCCTGCCAA-ATTTGATTG
* * *
31891295 AACT-CAAAATTAAG-AGAACATTTCTATTAGCATTCAAATTGGGACGAAATAGACTGTTATGCC
192 AA-TGCAAAATTAAGAAG-ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCC
* * * *
31891358 AAA-T----T-----ACT---CTACCAAAAATTTGATTTAATGAAAAATTAAAAGGACATTTCTA
255 AAACTACCCTGCCAAACTGCCCTACC-AATATTTGCTTGAATGCAAAATTAAAAGGACATTTCTA
* * * * * * * *
31891410 TAAGCATTCAAATTGGGAAGAAATTGACTATCAAGCCAAACT-GTCTTGCTAAAATTGGTTGAAT
319 TTAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTC-TGCTAAATTTGATTGAAT
*** * * * * *
31891474 GTTAAATTAATAGGACATTTCTATAAACATTCAAATTGGGACGAAAAGGACTGTCAAGTCAAACT
383 ACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGATTGTCAAGCCAAACT
*
31891539 ACTCCTCCAAACTGCACTGCCAAAATTTTG-TTGAATGATAAA
448 --GCCT------TG--CT---AAAA--TTGATTGAATGATAAA
* * * *
31891581 TTAAAAGGACATTTCTATAAGCATTCAAATTGAGACGAAAAGGACTGTTATGCCAAACTACTC-A
1 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTAC-CAA
** *
31891645 GCCAAACTGCTTTGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAA
65 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAA
* *
31891710 ATTGGGACAAAATTGACTGTCATGCGAAACTACCCAGCCAAACTGCCCTGCCCAAATTTGATTGA
130 ATTGGGACGAAATGGACTGTCATGC-AAACTACCCAGCCAAACTGCCCTG-CCAAATTTGATTGA
* * * * * * * *
31891775 ATGCAAAATTAATAAGACATTTCTATAAGCATTCAATTTCGTACAAAATGTACTATCATGTCAAA
193 ATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAA
* ** *
31891840 CTACCCTGCCAAACTACCCTATTAATATTTGCTTGAATGCAAAGTTAAAAGGACATTTCTATTAG
258 CTACCCTGCCAAACTGCCCTACCAATATTTGCTTGAATGCAAAATTAAAAGGACATTTCTATTAG
* * * * *
31891905 AATTTAAATTGGGACGAAATGGACTCTCATGCCAAACTACTCTACTTAAATTTGATTTAATACAA
323 CATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTCTGC-TAAATTTGATTGAATACAA
* * * *
31891970 AATTAAGAAGACAATTCTATAAGTATTCAAATTGGGACGAAATTGATTGTCAAGCCAAACTGCCT
387 AATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGATTGTCAAGCCAAACTGCCT
*
31892035 TGCTAAAATTAATTGAATGATAAA
452 TGCTAAAATTGATTGAATGATAAA
* * *
31892059 TTAAGAGAAAATTTCTATAAGCATTCAAATTGGGACGAAATTGACTGTCATGCCAAACTACCAAG
1 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCAAG
* * * *
31892124 CCAAACTGCCCTGCTAATATTTGGTTGAATGCAAATTTAAGAGGATATTTTTATAAGCATTCAAA
66 CCAAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAA
* * *
31892189 TTGGGACAAAATTGACTGTCATGCGAAACTACCCAGTCAAACTGCCCTGCCCAAATTTGATTGAA
131 TTGGGACGAAATGGACTGTCATGC-AAACTACCCAGCCAAACTGCCCTG-CCAAATTTGATTGAA
* * * * * * * *
31892254 TGCAAAATTAATAAGACATTTCTATAAGCATTCAATTTCGTACAAAATGTACTATCATGTCAAAC
194 TGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAAC
* ** * *
31892319 TACCCTGCCAAACTACCCTATTAATATTTGCTTGAATGCAAAGTTAAAAGGACATTTCTATTAGA
259 TACCCTGCCAAACTGCCCTACCAATATTTGCTTGAATGCAAAATTAAAAGGACATTTCTATTAGC
* * * *
31892384 ATTTAAATTGGGACGAAATGGACTCTCATGCCAAACTACTCTACTTAAATTTGATTTAATACAAA
324 ATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTCTGC-TAAATTTGATTGAATACAAA
* * * *
31892449 ATTAAGAAGACAATTCTATAAGTATTCAAATTGGGACGAAATTGATTGTCAAGCCAAACTGCCTT
388 ATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGATTGTCAAGCCAAACTGCCTT
* *
31892514 GCTAAAATTAATTAAATGATAAA
453 GCTAAAATTGATTGAATGATAAA
* * *
31892537 TTAAGAGAAAATTTCTATAAGCATTCAAATTGGGACGAAATTGACTGTCATGCCAAACTACCAAG
1 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCAAG
* * * * * *
31892602 CCAAACTGCCCTGCTAATATTTGGTTGAATGCAAATTTAAGAGGAAATTTTTATAAGTATTCATA
66 CCAAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAA
* * *
31892667 TTGGAATGAAATGGACTGT-ATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATTGAA
131 TTGGGACGAAATGGACTGTCATG-CAAACTACCCAGCCAAACTGCCCTGCC-AAATTTGATTGAA
* * * * * * * *
31892731 TGCAAAATTAAGAGGACATTTCTATGAGTAATCAATTTGGAACGAAATGGATTGTCATGTCAATA
194 TGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAA-A
* * * * * * * *
31892796 -TTCTCTAG-GAAACTGCCCTGCCAATATTTGCTTCAATACAAAATTAAGAGCACATTTCTATTA
258 CTACCCT-GCCAAACTGCCCTACCAATATTTGCTTGAATGCAAAATTAAAAGGACATTTCTATTA
* * * *
31892859 GTATTCAAATTGGGACGGAAA-GGACTGTCATGCCAAATTACTCTGCCAAAATTTGATTTAATAC
322 GCATTCAAATTGGGAC-GAAATGGACTGTCATGCCAAACTACTCTG-CTAAATTTGATTGAATAC
* * * *
31892923 AAAATTAAGAGGACATTTCTATAAGCATTTAAAATGGGACGAAATTGATAGTCAAGCCAAACTG-
385 AAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGATTGTCAAGCCAAACTGC
31892987 CTCTGCTAAAATTGATTGAATGATAAA
450 CT-TGCTAAAATTGATTGAATGATAAA
* * *
31893014 TTAAGAGGACATTTCTATAAGCATTCAAATTGAGG-CGAAATGGACTATCTTGCCAAAATACCCA
1 TTAAGAGGACATTTCTATAAGCATTCAAATTG-GGACGAAATGGACTGTCATGCCAAACTA-CCA
* * * * *
31893078 A-CCAAACTGTCCTGCCAAAATTTTATTGACTGCAAATTTAAGAGGACATTTTTATAAGAATTTA
64 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCA
* * * * * *
31893142 TATTGAGATGAAATGGACTGTCATGCCAAACTAACAAGCCAAATTGCCCTGCCAAAATTTGATTG
129 AATTGGGACGAAATGGACTGTCATG-CAAACTACCCAGCCAAACTGCCCTGCC-AAATTTGATTG
** * * * * * *
31893207 AATGC-ACTTTAATATGACACTTT-TATAGGCATTCAAATTAGGATGAAATAGACTGTCATGCCA
192 AATGCAAAATTAAGAAGACA-TTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCA
* * * * * ** **
31893270 AACTACCCAGCCAAACTGCGCTACCAA-A-ATGAATTGAATGCAAAAATAATTGGGTATTTCTAT
256 AACTACCCTGCCAAACTGCCCTACCAATATTTG-CTTGAATGCAAAATTAAAAGGACATTTCTAT
* * * * * *
31893333 AAGCATTCACATTGGGACAAAATGGGCTGTCATGCAAAACTACCCAACCAAACTGCCTTGTCAAA
320 TAGCATTCAAATTGGGACGAAATGGACTGTCATGC----C-A---AA-C-TACT--C-TG-CTAA
* * * * * *
31893398 ATTTGATTGAATAGAAAATTAACAGGATATTTCTATAAGCATTCAATTTGGCAAGAAATGGATTG
371 ATTTGATTGAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGATTG
* * ** * * *
31893463 TCATGTCGAACTACCCTGCCAAACTACCCAACAAATATTTGCTTGAGTGCA-AAA
436 TCAAG-CCAA--A--CTG-C---CT-TGC--TAAA-A-TTGATTGAATG-ATAAA
* * * * * *
31893517 TTAAAACGACATTTCTATTAGCATTTAAATTGGAACGAAATGGACTGCCATGCCAAACT------
1 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCAAG
* * * * * * * *
31893576 ----ACT---TTGGCAAAATTTGATTTAATTCAAAATTAAGACGACATTTCTATAAGTATTCAAA
66 CCAAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAA
* * * *
31893634 TTTGGACGAAATTGACTG---T-----C-A---AGCCAAACTGCCCTGCTAAAATTGATTGAATG
131 TTGGGACGAAATGGACTGTCATGCAAACTACCCAGCCAAACTGCCCTGCCAAATTTGATTGAATG
* * *
31893687 -ATAAATTAA-AAGGACATTTCTATAAGCATTCAATTTGGGACGAAATGGACGGTTATGCCAAAC
196 CA-AAATTAAGAA-GACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAAC
* * * * * * * * *
31893750 TACCCAGCCAAACTGTCCTGCCAAAATTTGGTTGAATGCAAATTTAAGAGAACATTT-TTTTAAG
259 TACCCTGCCAAACTGCCCTACCAATATTTGCTTGAATGCAAAATTAAAAGGACATTTCTATT-AG
* ** * * * * * *
31893814 CATTCAAATTTGGTTGAAATAGACTATTATACAAAACTAC-CAAGCTAAATTGCCTTGCCAAAAT
323 CATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTC-TGCTAAA-T---TTG-----AT
* * * * * * * * *
31893878 TGATTAAAAGCAAAACTAAGAGGCCATTTATATAAGCGTTCAAATTGTGACAAAATCGACTGTCA
378 TG---AATA-CAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGATTGTC-
* * * *
31893943 TGGAAAACTACCCAACCAGACTGCCCTGCCAAAATTTGATTAAATTGA-AAA
438 ------A--AGCC-A--A-ACTGCCTTGCTAAAA-TTGATTGAA-TGATAAA
* * * * * * *
31893994 TTGAGAGGACATTTCTATAAGCAAT-AAATTTGCGACAAAATGGATTGTCATGCTAAACTACCAT
1 TTAAGAGGACATTTCTATAAGCATTCAAA-TTGGGACGAAATGGACTGTCATGCCAAACTACCAA
* * * ** * * * * *
31894058 GCCAAAACTACCCTGCTAATATTTTCTTAAATGCAAAATTCAGAGAACATTTCTATTAA-CATTC
65 GCC-AAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAGGACATTTTTA-TAAGCATTC
* * *
31894122 AAATTGGAACGAAATGGAC--T-AT-----C-A--CA-CCAAACTACTCTGCCAAATTTGATTGA
128 AAATTGGGACGAAATGGACTGTCATGCAAACTACCCAGCCAAACTGCCCTGCCAAATTTGATTGA
* * * * * *
31894175 ATGAAAAATTAAG-AGAACATTTCTATACGTATTAAAATTGGGATGAAATGGACTGTAATGCCAA
193 ATGCAAAATTAAGAAG-ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAA
* * * * * * *
31894239 ACTACCCAGCCAAACCGCCCTGCCAAAATTAGATTGAATGCAAAATTAATAA-GACATTTCTATA
257 ACTACCCTGCCAAACTGCCCTACCAATATTTGCTTGAATGCAAAATTAA-AAGGACATTTCTATT
* * * * * * * * * *
31894303 AGCATTCAAATTAGGAGGGAATTGATTGTCAGGCCAAACTGC-CTTGCTAAAATTCATTGAATGC
321 AGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTC-TGCTAAATTTGATTGAATAC
*
31894367 AAAATTAAGAGGACATTTCTCTAAGCATTCAAATTGGGACGAAATGGACTATCTTGCCAAACTAC
385 AAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGG---A--TTG------T-C
* * * * * * * *
31894432 TCATCCAAACTTCCCTACCAAAATTTGGTTGAATGCA-AAT
438 -AAGCCAAACTGCCTTGCTAAAA-TTGATTGAATG-ATAAA
** * ** * * *
31894472 TTTTGAGGACATTTTTATAATTATTCAAATTGGGACGAAATGAACTGTCATTCCAAACTACCTAG
1 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCAAG
* * ** * *
31894537 -CAAACAGCCCTGCCAAAA-TTGATTGAAAGCAAAAATAAGAGGACGTTTATATAAGCATTCAAA
66 CCAAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAA
* * * * * * * * *
31894600 TTGCGACAAAATGG-CATATCATGGAAAACTACCTAACCAAACTACTCC-GCCAAAATTTGCTTA
131 TTGGGACGAAATGGAC-TGTCAT-GCAAACTACCCAGCCAAACTGC-CCTGCC-AAATTTGATTG
* * * * * * *
31894663 AATGGAAAATTAAGAGGACATTTTTATAAGCATTCAATTTGGGACGAAATGGATTGCCATGACAA
192 AATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAA
* * * ** * *
31894728 ACTGCCCTGCCAAACTACCC-AGCCAATATTTGCCTGAATGCAAAA-TAAAGAAAAAATGTCTAT
257 ACTACCCTGCCAAACTGCCCTA-CCAATATTTGCTTGAATGCAAAATTAAA-AGGACATTTCTAT
* * ** * *
31894791 TAGCATTCAAATTGGAACAAAATAAACTGTCATG-C---C-A-------AAATTTGATTTAATGC
320 TAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTCTGCTAAATTTGATTGAATAC
* * * *
31894844 AAAATTATA-AGGACATTTATATAAGCATTCAAATTGGGATGAAATTG-TCTGTTAAGCCAAACT
385 AAAATTA-AGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAT-TGTCAAGCCAAACT
* *
31894907 GCCCTGCTAAAAGTGATTGAATGATAAA
448 GCCTTGCTAAAATTGATTGAATGATAAA
* * * * ** * *
31894935 TTAAGAGGACGTTTATATAAGAATTCAAATTGGGATGAAATGGGTTG-CAATGACAAACTACCCA
1 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTC-ATGCCAAACTACCAA
* * *
31894999 GCCAAACTGCCATGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAATCATTCAA
65 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAA
* * * * * *
31895064 ATTGAGACGAAATGGACTATTATTCCAAACTACCCAGCCAAACTGCTCTGCCAAAATTGATTGAA
130 ATTGGGACGAAATGGACTGTCA-TGCAAACTACCCAGCCAAACTGCCCTGCCAAATTTGATTGAA
* * * * * ** ** *
31895129 AGCAAAAATAAGAGGAAATTTATATAAATATTCAAATTGTAAC-AAATAGACTGTCATG-CAAA-
194 TGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAAC
* * * *
31895191 -A--CTG-----C-G--CTGCCAATATTTGCGTGAGA-GCAAAATTAAAAGGACATTTTTACTAG
259 TACCCTGCCAAACTGCCCTACCAATATTTGCTTGA-ATGCAAAATTAAAAGGACATTTCTATTAG
* * * * * * *
31895244 CATTTAAATTGGAACGAAATGGACTGTCATGCCAAACTACTTTGCCAAAATTTGATTCAATGCAG
323 CATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTCTG-CTAAATTTGATTGAATACAA
* * * ** * *
31895309 AATTAATAGGACAATTCTATAAGCATTCAAATTGGGATGAAATTAACTGTCAAGCCAAACTACCT
387 AATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGATTGTCAAGCCAAACTGCCT
**
31895374 TAATAAAATTGATTGAATGATAAA
452 TGCTAAAATTGATTGAATGATAAA
* *
31895398 TTAAGAGGACATTTCTATAAGCAATCAAATTGCGACGAAATGGACTGTCATGCCAAACTAACC-A
1 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACT-ACCAA
* * *
31895462 GCTAAACTGCCCTGCTAAAATTTTG-TTCAATGCAAATTTAAGAGGACATTTTTATAAGCATTCA
65 GCCAAACTGCCCTGCCAAAA-TTTGATTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCA
* * *
31895526 AATTGGGACGAAATGGACTGTCAAT-CTAAACTATCCAGCCAAACTGCCCTGCC-AATATTAATC
129 AATTGGGACGAAATGGACTGTC-ATGC-AAACTACCCAGCCAAACTGCCCTGCCAAAT-TTGATT
* * * * * * ** * *
31895589 AAAAGC-AAA--AATAAGACATTTATATAAGGATTCAAATTGTGAAAAAATAGACTGTCATGCAA
191 GAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCA
** * * * * * * * *
31895651 AACTACCCAACCAAACTGCCTTGCCAAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATA
256 AACTACCCTGCCAAACTGCCCTACCAATATTTGCTTGAATGCAAAATTAAAAGGACATTTCTATT
* * * * * * * * ** *
31895716 AGCATACAATTTGGGATGAAATGGATTGTCATGTCAACCTACCCTGCCAAGATTTTCTTGAATGC
321 AGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTCTGCTAA-ATTTGATTGAATAC
* * * * *
31895781 AAAATAAAGAGAACATTTCTATTAGCATTCAAATTGGAACGAAATGGACTT-TCATGCCAAACT-
385 AAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGA-TTGTCAAGCCAAACTG
* * * *
31895844 ACTCTGCCAATATTTGATTGAATGAAAAA
449 CCT-TGCTAA-AATTGATTGAATGATAAA
* * * * ** *
31895873 TTAAGAGGACATTTTTGTAAGCATTCAGATTGGGACGAAATGGACTGTAATGGAAAACTACCCAG
1 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCAAG
* * * *
31895938 CCAAACCGCCCTGCCAAAATATGAATT-AATGC-ACTTTAAGAGAACATTTTTATAAGCATTCAA
66 CCAAACTGCCCTGCCAAAATTTG-ATTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAA
* * * * * *
31896001 ATTGGGATGAAATGGACTATAATGAAAAACTACCCAGCCAAACTGCCATGCCAAAATTGATTGAA
130 ATTGGGACGAAATGGACTGTCATG-CAAACTACCCAGCCAAACTGCCCTGCCAAATTTGATTGAA
* * * * * * ** *
31896066 TGCAAAAAT-AGAAGAATATTTATATAAGCTTTCAAATTGAGACAAAATGGGTTGTCATGCAAAA
194 TGCAAAATTAAGAAG-ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAA
** * * * * ** *
31896130 CTACCCAACCAAACTGCCCTATCAAAATTTGATTGAATGTAAAATTATGAGGACATTTCTATAAG
258 CTACCCTGCCAAACTGCCCTACCAATATTTGCTTGAATGCAAAATTAAAAGGACATTTCTATTAG
* * * * *
31896195 CATTCAATTTGGGAAGAAATGGACTATCATGTCAAACTACCTTGCCAAACTTCCCTGCCAATATT
323 CATTCAAATTGGGACGAAATGG---A-C-TGT----C-A---TGCCAAACTACTCTGCTAA-ATT
* * * * * * * * * *
31896260 TGCTTGAGTGCAAAATTAAGAGGACTTTTCCATTAA-CATTTAAATTGGAACGAAATAGACTATC
374 TGATTGAATACAAAATTAAGAGGACATTTCTA-TAAGCATTCAAATTGGGACGAAATGGATTGTC
* * * *
31896324 ATGCCAAACT-ACTCTGCCAAAATTTGATTTAATGCA-AAA
438 AAGCCAAACTGCCT-TGCTAAAA-TTGATTGAATG-ATAAA
* * * *
31896363 TTAAGAAGACATTTCTATAAGCATTCAAATTGGGATGAAACT-GACTGACAAGCC-AA--ACC-A
1 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA-TGGACTGTCATGCCAAACTACCAA
* * * ** *
31896423 --C---CT----TGCTAAAA-TTGATTGATTG-ATAAATTAAGATAACATTTTTACAAGCATTCA
65 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCA-AATTTAAGAGGACATTTTTATAAGCATTCA
* * * * * * * *
31896477 AATTGGGACAAAATGGACTGTAATGCCAAACAACCTAGTCTAATTGCCCTGCCAATATTTGCTTG
129 AATTGGGACGAAATGGACTGTCATG-CAAACTACCCAGCCAAACTGCCCTGCCAA-ATTTGATTG
* * * * * * * * *
31896542 AGTGTAAAATTAAAAAAGGACATTTTTATTAGCATTTAAATTGGAATGAAATGGACTATCATGCC
192 AATGCAAAATT-AAGAA-GACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCC
* * * *
31896607 AAACTA--CT------CTG-GC-A--AA-ATTTGATTTAATGCAAAATTAAGAGGACATTTCTAT
255 AAACTACCCTGCCAAACTGCCCTACCAATATTTGCTTGAATGCAAAATTAAAAGGACATTTCTAT
* * * * * * *
31896659 AAGCATTCAAATTGGGACAAAATTGTCTGTCAAGCCAAACTGC-CTTGCTAAA-TTGAATG-AT-
320 TAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTC-TGCTAAATTTGATTGAATA
* * *
31896720 --AAATTAAGAGGACATTTCTACAAGCATTCAAATTGGGATGAAATGGGCTGTCATGCCAAACTA
384 CAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT-GG--AT--TG------T-
* * * * * *
31896783 CCAAGCCAAACAGCCCTGCCAAAATTTTG-TTCAAT-ACGAAT
437 -CAAGCCAAACTGCCTTGCTAAAA--TTGATTGAATGA-TAAA
* * * * * *
31896824 TTAAGAGGACATTTTTATAAGCATTCAAATTAGGACAAAATGGACTGTCTTTCCAAATTACCCAA
1 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTA-CCAA
** *
31896889 -CCAAACT----TGATAGAAA---GA---AA---AAA--TAAGAGGACATTTATATAAGCATTCA
65 GCCAAACTGCCCTGCCA-AAATTTGATTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCA
* * * * * * *
31896938 AATTGCGACAAAATGGAATGTCATGCAAAACTGCCAAACCAAACTGCCCTGCCGAAATTTGATTA
129 AATTGGGACGAAATGGACTGTCATGC-AAACTACCCAGCCAAACTGCCCTGCC-AAATTTGATTG
* * * * * *
31897003 AATGGAAAATTAAGATGACATTTCTATAAGCATTCAATTTAGGACTAAATGGATTGTCATG----
192 AATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAA
* * * *
31897064 -------T--CAAACTGCCCTGCCAATATTTGCTTGGATG-AAAAATAAAGAGAACATTTCTATT
257 ACTACCCTGCCAAACTGCCCTACCAATATTTGCTTGAATGCAAAATTAAA-AGGACATTTCTATT
* * * * * *
31897119 AGCATTAAAATTGGAACGAAATAGACTTTCATGCCAAACTACTCCGCCAATATTTGATTGAATGA
321 AGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTCTGCTAA-ATTTGATTGAAT-A
* * * *
31897184 -AAAGTTAAGAGGACATTTCTGTAAGCATTTAAATTGGGACGAAATGGATTGT-AATGCAAAACT
384 CAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGATTGTCAA-GC-CAA--
* * *
31897247 ACCTAGCCAAACCGCTCTGCGAAAATTAGAGTGAAT-ACAAAA
445 A-CT-G------C-CT-TGCTAAAATT-GATTGAATGA-TAAA
* * * * *
31897289 TTAAGAAGACATTCCTATAAGCATTCAAATTGGGAGGGAATTGACTGTCA-G------------G
1 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCAAG
* * * * * * *
31897341 CCAAAGTGCCCTGCTAAAA-TTCATTTAAAGCAAAATTAATAGGACATTTTTATAAGCATTCAAA
66 CCAAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAA
* * * * *
31897405 TTGGGACTAAATGGATTGTCATGCAAAACTACCCAGCCTAATTTCCCTGCCACAATTTGATTGAA
131 TTGGGACGAAATGGACTGTCATGC-AAACTACCCAGCCAAACTGCCCTGCCA-AATTTGATTGAA
** * * * * * * * * * * *
31897470 TGC-ACTTTAAGAGGACATTTTTATCAGCATTCAGATTGAGACGAAATAGACTATAAAGCAAAAT
194 TGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAAC
** * * * * * ** * * *
31897534 TATGCAGCCAACCTGCCCTGCCAA-AATTGATTGAATGCAAAGA-TAGGAGAATATTTCTATAAG
259 TACCCTGCCAAACTGCCCTACCAATATTTGCTTGAATGCAAA-ATTAAAAGGACATTTCTATTAG
* * *
31897597 CATTCAAATTGGGACAAAATGGGCTGTCATGCAAAACTACTCAACCAAATTGCCTTGTCAAAATT
323 CATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACT----C----TG-C---T--AAATT
* * * * *
31897662 TGATTGTATGCAAAATTAAGAGGACATTTTTATAAGCATTC-AATTCGGGAAGAAATGGTCTGTC
374 TGATTGAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAATT-GGGACGAAATGG---AT-
* * * * *
31897726 ATGTCAAACTACCCTGCCAAACTGCCCTGCCAATATTTGCTTGAGTG-TAAAA
434 -TGTC--A--A----GCCAAACTGCCTTGCTAA-AATTGATTGAATGAT-AAA
* *
31897778 TTAAGAGAACATTTCTATTAATG-ATT-AAATTGGAACGAAATGGA-----ATG------T--CA
1 TTAAGAGGACATTTCTA-TAA-GCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCA
* * * * * * * *
31897828 AGCCAAACTACTCTGTCAAAATTTGATTTAATGCAAAATTAAAAAGACATTTCTATAAGCATTCA
64 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCA
** * * * * * *
31897893 AATTGGGAC-AACATTTACTGT-A-G---------C-GCCAAGCCGCCCTACTAAAATTAATTGA
129 AATTGGGACGAA-ATGGACTGTCATGCAAACTACCCAGCCAAACTGCCCTGCCAAATTTGATTGA
* *
31897945 TTG-ATAAATTAA-AATGACATTTCAATAAGCATTCAAAATTGGGACGAAATGGACTGTCATGCC
193 ATGCA-AAATTAAGAA-GACATTTCTATAAGCATTC-AAATTGGGACGAAATGGACTGTCATGCC
** * * * * * *
31898008 AAACTACCAAGCCAAGCTGCCCTACTAATATTTGGTTGAATGCAAATTTAAGAGGACATTTTTAT
255 AAACTACCCTGCCAAACTGCCCTACCAATATTTGCTTGAATGCAAAATTAAAAGGACATTTCTAT
* * * * * *
31898073 AAGTATTCAAATTGGAATGAAATGGGCTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAA
320 TAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACT----------ACT---CTG-CTAA
*** ** * * * * *
31898138 ATTTGATTGAACGTAAAATTAAGAGGATGTTTCTATGAGTAATCAATTTGGAACGAAATGGATTG
371 ATTTGATTGAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGATTG
* * * * * *
31898203 TCATGTTAAACTTCCCTAGCAAACTGCCCTGCCAATATT-TTCCTCAATG-TAAAA
436 TC------AA----GC---CAAACTGCCTTGCTAAAATTGAT--TGAATGAT-AAA
* * * * * *
31898257 TTAAGAGCACATTTCTATTAGGATTCAAATTGGGACAAAATGCACTATCATGCC-AACT------
1 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCAAG
* * * * *
31898315 ----ACT---CTGCCAAAATTTGATTTAATGCAAAATTAAGAGAACAATTCTATAAGCATTCAAA
66 CCAAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAA
* ** * * * * * *
31898373 TTGGGACAAAATTAATTGTTAAGCTAAACTACCCAACCAAACTGCCCTGCCAAAATTGATTGAAA
131 TTGGGACGAAATGGACTGTCATGC-AAACTACCCAGCCAAACTGCCCTGCCAAATTTGATTGAAT
* * * * * * ** * * * *
31898438 GTAAAAATAAGAGGAAATTTATATCAGCATTCAAATTGCAACAAAATGAACTGTCACGCAAAACT
195 GCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACT
** * * * * * *
31898503 ACCCAACCAAACTGCCCCTACCAATGTTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGC
260 ACCCTGCCAAACTG-CCCTACCAATATTTGCTTGAATGCAAAATTAAAAGGACATTTCTATTAGC
* * * * ** * *
31898568 ATTTAATTTGGGACGAAATGGATTCTCATATCAAACTACCCTG-TCAATATTT-ACTTGAATGCA
324 ATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTCTGCT-AA-ATTTGA-TTGAATACA
* * * ** * * * **
31898631 CAATAAAGAGAACATTTCTATTTGCATTCAAATTGGAACGAAATAGATTGTCATGCCAAACT-AT
386 AAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGATTGTCAAGCCAAACTGCC
* * *
31898695 TTCACCAAAATTTGATTGAATGAAAAA
451 TT-GCTAAAA-TTGATTGAATGATAAA
* * *
31898722 TTAAGAGGACATTTTTGTAAGCATTCAAATTGGGA-AAAATGGACTG---T----AA-T-----G
1 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCAAG
* * *
31898773 CCAAACTGCCCTGCCAAAATTAGATTGAATGC-AATATTAAGAAGACATTTCTATAAGCATTCAA
66 CCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAT-TTAAGAGGACATTTTTATAAGCATTCAA
* * * * * * *
31898837 ATTGGGAGGGAATTGAC--T-AT-C--A-GA---A--CAAACTGCCCTGCTAAAATTCATTGAAT
130 ATTGGGACGAAATGGACTGTCATGCAAACTACCCAGCCAAACTGCCCTGCCAAATTTGATTGAAT
* * * * * * *
31898890 GAAAAATTAAGAGGACATTTATATAAGCATTCAAATTAGGATGAAATGGACTGTCATTCGAAACT
195 GCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACT
* ** * * * * ** * * *
31898955 ATCAAGCCAAATTGCCCTGCCAAAATTTGATTGAATG-AACTTTAAGAGGATATTT-TATAAGCA
260 ACCCTGCCAAACTGCCCTACCAATATTTGCTTGAATGCAAAATTAAAAGGACATTTCTATTAGCA
* * * * *
31899018 TTCAAATTAGGACAAAATGGACTGTCATGCCAAACGACCCAACCAAACTACCCTGCCAAACTTGA
325 TTCAAATTGGGACGAAATGGACTGTCAT-------G------CCAAACTACTCTGCTAAATTTGA
* * * * * * *
31899083 TTGAATGCAAAAATAAGAGGTCATTTCTATAAGCATTTAAATTGGGACAAAATGGATGGTCATGC
377 TTGAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGATTGTCAAGC
31899148 CAAACTACCCAGCCAAATTGCCATTCTAAAATTGATTGAATGATAAA
442 CAAACT-----GCC---TTG-----CTAAAATTGATTGAATGATAAA
* ** * *
31899195 TTAAGAGGACATCTCTATAAGCATTCAAATTTTGTCGAAATGGATTGTCATG-CAACACTACCCA
1 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAA-ACTA-CCA
* * * * * * * * **
31899259 A-CCAAATTGACCAGCTAAAA-TCGATTGAATGCAAAATTCAGAGGACATTTCTATAATAATTCA
64 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCA
* * * * *
31899322 AATTTGGACAAAATGGACTGTCATGCCAAACTACCAAGCCAAACTATCCC--ACAAATATTGATT
129 AATTGGGACGAAATGGACTGTCATG-CAAACTACCCAGCCAAACT-GCCCTGCCAAAT-TTGATT
* * * * ** *
31899385 AAACGCAAAATTAATAAGACATTTGTATAAG-AGTTTTAATTGGGACGAAATAGACTGTCATGCC
191 GAATGCAAAATTAAGAAGACATTTCTATAAGCA-TTCAAATTGGGACGAAATGGACTGTCATGCC
31899449 AAA
255 AAA
31899452 TTATCCAGCA
Statistics
Matches: 6545, Mismatches: 1257, Indels: 1074
0.74 0.14 0.12
Matches are distributed among these distances:
447 2 0.00
448 35 0.01
449 31 0.00
450 74 0.01
451 28 0.00
452 100 0.02
453 6 0.00
454 20 0.00
455 6 0.00
456 5 0.00
457 5 0.00
458 16 0.00
459 97 0.01
460 38 0.01
461 231 0.04
462 50 0.01
463 331 0.05
464 150 0.02
465 363 0.06
466 76 0.01
467 116 0.02
468 14 0.00
469 5 0.00
470 11 0.00
471 6 0.00
472 7 0.00
473 57 0.01
474 242 0.04
475 147 0.02
476 178 0.03
477 971 0.15
478 1081 0.17
479 539 0.08
480 65 0.01
481 13 0.00
482 13 0.00
483 2 0.00
484 18 0.00
485 8 0.00
486 53 0.01
487 27 0.00
488 30 0.00
489 313 0.05
490 313 0.05
491 408 0.06
492 82 0.01
493 4 0.00
494 7 0.00
497 3 0.00
498 6 0.00
499 68 0.01
500 3 0.00
501 5 0.00
502 5 0.00
503 60 0.01
504 1 0.00
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (475 bp):
TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCAAG
CCAAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAA
TTGGGACGAAATGGACTGTCATGCAAACTACCCAGCCAAACTGCCCTGCCAAATTTGATTGAATG
CAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTA
CCCTGCCAAACTGCCCTACCAATATTTGCTTGAATGCAAAATTAAAAGGACATTTCTATTAGCAT
TCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTCTGCTAAATTTGATTGAATACAAAATT
AAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGATTGTCAAGCCAAACTGCCTTGCT
AAAATTGATTGAATGATAAA
Found at i:31892194 original size:101 final size:100
Alignment explanation
Indices: 31892020--31894829 Score: 1786
Period size: 101 Copynumber: 29.0 Consensus size: 100
31892010 AATTGATTGT
* * * * * *
31892020 CAAGCCAAACTGCCTTGCTAAAATTAATTGAATG-ATAAATTAAGAGAAAATTTCTATAAGCATT
1 CAAGCCAAACTGCCCTGCCAAATTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGCATT
*
31892084 CAAATTGGGACGAAATTGACTGTCATGCCAAACTAC
65 CAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* * * * *
31892120 CAAGCCAAACTGCCCTGCTAATATTTGGTTGAATGCAAATTTAAGAGGATATTTTTATAAGCATT
1 CAAGCCAAACTGCCCTGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
* * *
31892185 CAAATTGGGACAAAATTGACTGTCATGCGAAACTAC
65 CAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* * * *
31892221 CCAGTCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAATTAATAAGACATTTCTATAAGCATT
1 CAAGCCAAACTGCCCTG-CCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
* * * * * * *
31892286 CAATTTCGTACAAAATGTACTATCATGTCAAACTAC
65 CAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
** * *** * * * * *
31892322 CCTGCCAAACTACCCTATTAATATTTGCTTGAATGCAAAGTTAAAAGGACATTTCTATTAGAATT
1 CAAGCCAAACTGCCCTGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
* *
31892387 TAAATTGGGACGAAATGGACTCTCATGCCAAACTA-
65 CAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* * * * * * *
31892422 C---TC-TACT----T---AAATTTGATTTAATACAAAATTAAGAAGACAATTCTATAAGTATTC
1 CAAGCCAAACTGCCCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
*
31892476 AAATTGGGACGAAATTGA---T--TG------T--
66 AAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* * * * * * *
31892498 CAAGCCAAACTGCCTTGCTAAAATTAATTAAATG-ATAAATTAAGAGAAAATTTCTATAAGCATT
1 CAAGCCAAACTGCCCTGCCAAATTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGCATT
*
31892562 CAAATTGGGACGAAATTGACTGTCATGCCAAACTAC
65 CAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* * * * * *
31892598 CAAGCCAAACTGCCCTGCTAATATTTGGTTGAATGCAAATTTAAGAGGAAATTTTTATAAGTATT
1 CAAGCCAAACTGCCCTGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
* * *
31892663 CATATTGGAATGAAATGGACTGT-ATGCCAAACTAC
65 CAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* * * *
31892698 CTAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATGAGTAAT
1 CAAGCCAAACTGCCCTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
* * * * *
31892763 CAATTTGGAACGAAATGGATTGTCATGTCAATA-TTC
65 CAAATTGGGACGAAATGGACTGTCATGCCAA-ACTAC
* * * * * * * *
31892799 TCTAG-GAAACTGCCCTGCCAATATTTGCTTCAATACAAAATTAAGAGCACATTTCTATTAGTAT
1 -CAAGCCAAACTGCCCTGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCAT
31892863 TCAAATTGGGACGGAAA-GGACTGTCATGCCAAA-T--
64 TCAAATTGGGAC-GAAATGGACTGTCATGCCAAACTAC
* * *
31892897 -------TACT---CTGCCAAAATTTGATTTAATACAAAATTAAGAGGACATTTCTATAAGCATT
1 CAAGCCAAACTGCCCTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
* * *
31892952 TAAAATGGGACGAAAT----TG--AT-----AGT--
65 CAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* * *
31892975 CAAGCCAAACTGCTCTGCTAAAATTGATTGAATG-ATAAATTAAGAGGACATTTCTATAAGCATT
1 CAAGCCAAACTGCCCTGCCAAATTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGCATT
* * *
31893039 CAAATTGAGG-CGAAATGGACTATCTTGCCAAAATACC
65 CAAATTG-GGACGAAATGGACTGTCATGCCAAACTA-C
* * * * * *
31893076 CAA-CCAAACTGTCCTGCCAAAATTTTATTGACTGCAAATTTAAGAGGACATTTTTATAAGAATT
1 CAAGCCAAACTGCCCTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
* * * * *
31893140 TATATTGAGATGAAATGGACTGTCATGCCAAACTAA
65 CAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* ** * * *
31893176 CAAGCCAAATTGCCCTGCCAAAATTTGATTGAATGC-ACTTTAATATGACACTTT-TATAGGCAT
1 CAAGCCAAACTGCCCTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACA-TTTCTATAAGCAT
* * *
31893239 TCAAATTAGGATGAAATAGACTGTCATGCCAAACTAC
64 TCAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* * * * * ** **
31893276 CCAGCCAAACTGCGCTACCAAA-ATGAATTGAATGCAAAAATAATTGGGTATTTCTATAAGCATT
1 CAAGCCAAACTGCCCTGCCAAATTTG-ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
* * * *
31893340 CACATTGGGACAAAATGGGCTGTCATGCAAAACTACC
65 CAAATTGGGACGAAATGGACTGTCATGCCAAACTA-C
* * * *
31893377 CAA-CCAAACTGCCTTGTCAAAATTTGATTGAATAG-AAAATTAACAGGATATTTCTATAAGCAT
1 CAAGCCAAACTGCCCTG-CCAAATTTGATTGAAT-GCAAAATTAAGAGGACATTTCTATAAGCAT
* * * * * *
31893440 TCAATTTGGCAAGAAATGGATTGTCATGTCGAACTAC
64 TCAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
** * ** * * * * * *
31893477 CCTGCCAAACTACCCAACAAATATTTGCTTGAGTGCAAAATTAAAACGACATTTCTATTAGCATT
1 CAAGCCAAACTGCCCTGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
* * *
31893542 TAAATTGGAACGAAATGGACTGCCATGCCAAACT--
65 CAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
** * * * * *
31893576 --A--C--TTTG----GCAAAATTTGATTTAATTCAAAATTAAGACGACATTTCTATAAGTATTC
1 CAAGCCAAACTGCCCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* *
31893631 AAATTTGGACGAAAT----TGAC-TG------T--
66 AAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* * *
31893653 CAAGCCAAACTGCCCTGCTAAAATTGATTGAATG-ATAAATTAAAAGGACATTTCTATAAGCATT
1 CAAGCCAAACTGCCCTGCCAAATTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGCATT
* * *
31893717 CAATTTGGGACGAAATGGACGGTTATGCCAAACTAC
65 CAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* * * * * * *
31893753 CCAGCCAAACTGTCCTGCCAAAATTTGGTTGAATGCAAATTTAAGAGAACATTTTTTTAAGCATT
1 CAAGCCAAACTGCCCTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
* ** * * * * *
31893818 CAAATTTGGTTGAAATAGACTATTATACAAAACTAC
65 CAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* * * * * * * * * *
31893854 CAAGCTAAATTGCCTTGCCAAAATTGATTAAAAGCAAAACTAAGAGGCCATTTATATAAGCGTTC
1 CAAGCCAAACTGCCCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * **
31893919 AAATTGTGACAAAATCGACTGTCATGGAAAACTACC
66 AAATTGGGACGAAATGGACTGTCATGCCAAACTA-C
* * * *
31893955 CAA-CCAGACTGCCCTGCCAAAATTTGATTAAATTG-AAAATTGAGAGGACATTTCTATAAGCAA
1 CAAGCCAAACTGCCCTGCC-AAATTTGATTGAA-TGCAAAATTAAGAGGACATTTCTATAAGCAT
* * * *
31894018 T-AAATTTGCGACAAAATGGATTGTCATGCTAAACTAC
64 TCAAA-TTGGGACGAAATGGACTGTCATGCCAAACTAC
* * * ** * * *
31894055 CATGCCAAAACTACCCTGCTAATATTTTCTTAAATGCAAAATTCAGAGAACATTTCTATTAA-CA
1 CAAGCC-AAACTGCCCTGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTA-TAAGCA
*
31894119 TTCAAATTGGAACGAAATGGAC--T-AT------C-A-
63 TTCAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* * * * * * *
31894146 C-A-CCAAACTACTCTGCCAAATTTGATTGAATGAAAAATTAAGAGAACATTTCTATACGTATTA
1 CAAGCCAAACTGCCCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* *
31894209 AAATTGGGATGAAATGGACTGTAATGCCAAACTAC
66 AAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* * * * *
31894244 CCAGCCAAACCGCCCTGCCAAAATTAGATTGAATGCAAAATTAATAAGACATTTCTATAAGCATT
1 CAAGCCAAACTGCCCTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
* * * *
31894309 CAAATTAGGAGGGAATTGA---T--TG------T--
65 CAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* * * * * *
31894332 CAGGCCAAACTGCCTTGCTAAAATTCATTGAATGCAAAATTAAGAGGACATTTCTCTAAGCATTC
1 CAAGCCAAACTGCCCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* *
31894397 AAATTGGGACGAAATGGACTATCTTGCCAAACTAC
66 AAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* * * * * ** * **
31894432 TC-ATCCAAACTTCCCTACCAAAATTTGGTTGAATGCAAATTTTTGAGGACATTTTTATAATTAT
1 -CAAGCCAAACTGCCCTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCAT
* *
31894496 TCAAATTGGGACGAAATGAACTGTCATTCCAAACTAC
64 TCAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* * * * * * *
31894533 CTAG-CAAACAGCCCTGCCAAAATTGATTGAAAGCAAAAATAAGAGGACGTTTATATAAGCATTC
1 CAAGCCAAACTGCCCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * **
31894597 AAATTGCGACAAAATGG-CATATCATGGAAAACTAC
66 AAATTGGGACGAAATGGAC-TGTCATGCCAAACTAC
* * * * *
31894632 CTAA-CCAAACTACTCC-GCCAAAATTTGCTTAAATGGAAAATTAAGAGGACATTTTTATAAGCA
1 C-AAGCCAAACTGC-CCTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA
* * * * *
31894695 TTCAATTTGGGACGAAATGGATTGCCATGACAAACTGC
63 TTCAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
** * * ** * ** * * *
31894733 CCTGCCAAACTACCCAGCCAATATTTGCCTGAATGCAAAATAAAGAAAAAATGTCTATTAGCATT
1 CAAGCCAAACTGCCCTGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
* * **
31894798 CAAATTGGAACAAAATAAACTGTCATGCCAAA
65 CAAATTGGGACGAAATGGACTGTCATGCCAAA
31894830 ATTTGATTTA
Statistics
Matches: 2104, Mismatches: 449, Indels: 313
0.73 0.16 0.11
Matches are distributed among these distances:
76 1 0.00
77 3 0.00
78 1 0.00
79 2 0.00
80 3 0.00
81 1 0.00
82 2 0.00
83 6 0.00
84 6 0.00
85 4 0.00
86 5 0.00
87 265 0.13
88 185 0.09
89 11 0.01
90 5 0.00
91 6 0.00
92 8 0.00
93 3 0.00
95 1 0.00
96 6 0.00
97 2 0.00
98 10 0.00
99 80 0.04
100 415 0.20
101 994 0.47
102 73 0.03
103 6 0.00
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.28
Consensus pattern (100 bp):
CAAGCCAAACTGCCCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
AAATTGGGACGAAATGGACTGTCATGCCAAACTAC
Found at i:31892486 original size:88 final size:87
Alignment explanation
Indices: 31892324--31892598 Score: 272
Period size: 88 Copynumber: 3.1 Consensus size: 87
31892314 CAAACTACCC
* * * * * *
31892324 TGCCAAACTACCCTA-TTAATATTTGCTTGAATGCAAAGTTAA-AAGGACATTTCTATTAGAATT
1 TGCCAAACTA-CCTACTTAA-ATTTGATTAAATACAAAATTAAGAA-GACAATTCTATAAGAATT
* * *
31892387 TAAATTGGGACGAAATGGACTCTCA
63 CAAATTGGGACGAAATTGACTGTCA
* *
31892412 TGCCAAACTACTCTACTTAAATTTGATTTAATACAAAATTAAGAAGACAATTCTATAAGTATTCA
1 TGCCAAACTAC-CTACTTAAATTTGATTAAATACAAAATTAAGAAGACAATTCTATAAGAATTCA
*
31892477 AATTGGGACGAAATTGATTGTCA
65 AATTGGGACGAAATTGACTGTCA
* * * * * * * *
31892500 AGCCAAACTGCCTTGC-TAAAATTAATTAAATGA-TAAATTAAG-AGAAAATTTCTATAAGCATT
1 TGCCAAACTACC-TACTTAAATTTGATTAAAT-ACAAAATTAAGAAGACAA-TTCTATAAGAATT
31892562 CAAATTGGGACGAAATTGACTGTCA
63 CAAATTGGGACGAAATTGACTGTCA
31892587 TGCCAAACTACC
1 TGCCAAACTACC
31892599 AAGCCAAACT
Statistics
Matches: 158, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
86 5 0.03
87 68 0.43
88 79 0.50
89 6 0.04
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.31
Consensus pattern (87 bp):
TGCCAAACTACCTACTTAAATTTGATTAAATACAAAATTAAGAAGACAATTCTATAAGAATTCAA
ATTGGGACGAAATTGACTGTCA
Found at i:31892886 original size:201 final size:202
Alignment explanation
Indices: 31892500--31894829 Score: 555
Period size: 201 Copynumber: 12.0 Consensus size: 202
31892490 TTGATTGTCA
* * *
31892500 AGCCAAACTGCCTTGCTAAAATTAATTAAATGATAAATTAAGAGAAAATTTCTATAAGCATTCAA
1 AGCCAAACTGCCCTGCCAAAATTAATTAAATGATAAATTAAGAGAAAATTTCTATAAGCAATCAA
* * * * *
31892565 ATTGGGACGAAATTGACTGTCATGCCAAACTACCAAGCCAAACTGCCCTGCTAATATTTGGTTGA
66 ATTGGAACGAAATGGACTGTCATGCCAAACTACCAAGCCAAACTGCCCTGCCAATATTTGCTTCA
* * * * * *
31892630 ATGCAAATTTAAGAGGAAATTTTTATAAGTATTCATATTGGAATGAAATGGACTGT-ATGCCAAA
131 ATACAAAATTAAGAGCAAATTTCTATAAGTATTCAAATTGGAAGGAAATGGACTGTCATGCCAAA
31892694 CTAC-CT
196 CTACTCT
* * * * * *
31892700 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCA-AAATTAAGAGGACATTTCTATGAGTAATC
1 AGCCAAACTGCCCTGCCAAAA-TTAATTAAATG-ATAAATTAAGAGAAAATTTCTATAAGCAATC
* * * * * *
31892764 AATTTGGAACGAAATGGATTGTCATGTCAATA-TTCTCTAG-GAAACTGCCCTGCCAATATTTGC
64 AAATTGGAACGAAATGGACTGTCATGCCAA-ACTAC-CAAGCCAAACTGCCCTGCCAATATTTGC
* * *
31892827 TTCAATACAAAATTAAGAGCACATTTCTATTAGTATTCAAATTGGGACGGAAA-GGACTGTCATG
127 TTCAATACAAAATTAAGAGCAAATTTCTATAAGTATTCAAATT-GGAAGGAAATGGACTGTCATG
*
31892891 CCAAATTACTCT
191 CCAAACTACTCT
* * * * * * * *
31892903 -GCCAAAAT---TTG----ATTTAA-T--A-CA-AAATTAAGAGGACATTTCTATAAGCATTTAA
1 AGCCAAACTGCCCTGCCAAAATTAATTAAATGATAAATTAAGAGAAAATTTCTATAAGCAATCAA
* * * * * * * *
31892955 AATGGGACGAAAT----TG--AT-----AGT--CAAGCCAAACTGCTCTGCTAA-AATTGATTGA
66 ATTGGAACGAAATGGACTGTCATGCCAAACTACCAAGCCAAACTGCCCTGCCAATATTTGCTTCA
* * * * * * *
31893006 ATGA-TAAATTAAGAGGACATTTCTATAAGCATTCAAATT-GAGGCGAAATGGACTATCTTGCCA
131 AT-ACAAAATTAAGAGCAAATTTCTATAAGTATTCAAATTGGAAG-GAAATGGACTGTCATGCCA
* *
31893069 AAATAC-CC
194 AACTACTCT
* * * * * * * * *
31893077 AACCAAACTGTCCTGCCAAAATTTTATTGACTGCA-AATTTAAGAGGACATTTTTATAAG-AATT
1 AGCCAAACTGCCCTGCCAAAA-TTAATTAAATG-ATAAATTAAGAGAAAATTTCTATAAGCAA-T
* * * * * * *
31893140 TATATT-GAGATGAAATGGACTGTCATGCCAAACTAACAAGCCAAATTGCCCTGCCAAAATTTGA
63 CAAATTGGA-ACGAAATGGACTGTCATGCCAAACTACCAAGCCAAACTGCCCTGCCAATATTTGC
* * ** * * * * * *
31893204 TTGAATGC-ACTTTAATATG-ACACTTT-TATAGGCATTCAAATTAGG-ATGAAATAGACTGTCA
127 TTCAATACAAAATTAAGA-GCA-AATTTCTATAAGTATTCAAATT-GGAAGGAAATGGACTGTCA
*
31893265 TGCCAAACTAC-CC
189 TGCCAAACTACTCT
* * * * * ** *** *
31893278 AGCCAAACTGCGCTACCAAAATGAATTGAATGCA-AAAATAATTGGGTATTTCTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTAATTAAATG-ATAAATTAAGAGAAAATTTCTATAAGCAATCA
* * * * * * * * *
31893342 CATTGGGACAAAATGGGCTGTCATGCAAAACTACCCAA-CCAAACTGCCTTGTCAAAATTTGATT
65 AATTGGAACGAAATGGACTGTCATGCCAAACTA-CCAAGCCAAACTGCCCTGCCAATATTTGCTT
* * * * * * * * *
31893406 GAATAGAAAATTAACAGGATATTTCTATAAGCATTCAATTTGGCAA-GAAATGGATTGTCATGTC
129 CAATACAAAATTAAGAGCAAATTTCTATAAGTATTCAAATTGG-AAGGAAATGGACTGTCATGCC
* *
31893470 GAACTACCCT
193 AAACTACTCT
* ** ** * * * * * *
31893480 -GCCAAACTACCC-AACAAATATTTGCTTGAGTGCA-AAATTAAAACG-ACATTTCTATTAGCAT
1 AGCCAAACTGCCCTGCCAAA-A-TTAATTAAATG-ATAAATTAAGA-GAAAATTTCTATAAGCAA
* * * * * *
31893541 TTAAATTGGAACGAAATGGACTGCCATGCCAAACT----------ACT---TTGGCAAAATTTGA
62 TCAAATTGGAACGAAATGGACTGTCATGCCAAACTACCAAGCCAAACTGCCCTGCCAATATTTGC
* * * * *
31893593 TTTAATTCAAAATTAAGA-CGACATTTCTATAAGTATTCAAATTTGG-ACGAAATTGACTG---T
127 TTCAATACAAAATTAAGAGC-AAATTTCTATAAGTATTCAAA-TTGGAAGGAAATGGACTGTCAT
31893653 ------C-A----
190 GCCAAACTACTCT
* * * * * * *
31893655 AGCCAAACTGCCCTGCTAAAATTGATTGAATGATAAATTAAAAGGACATTTCTATAAGCATTCAA
1 AGCCAAACTGCCCTGCCAAAATTAATTAAATGATAAATTAAGAGAAAATTTCTATAAGCAATCAA
* * * * * * * * *
31893720 TTTGGGACGAAATGGACGGTTATGCCAAACTACCCAGCCAAACTGTCCTGCCAAAATTTGGTTGA
66 ATTGGAACGAAATGGACTGTCATGCCAAACTACCAAGCCAAACTGCCCTGCCAATATTTGCTTCA
* * * * * ** * * * * *
31893785 ATGCAAATTTAAGAG-AACATTTTTTTAAGCATTCAAATTTGG-TTGAAATAGACTATTATACAA
131 ATACAAAATTAAGAGCAA-ATTTCTATAAGTATTCAAA-TTGGAAGGAAATGGACTGTCATGCCA
*
31893848 AACTAC-CA
194 AACTACTCT
* * * * * * *** * **
31893856 AGCTAAATTGCCTTGCCAAAATTGATTAAAAGCA-AAACTAAGAGGCCATTTATATAAGCGTTCA
1 AGCCAAACTGCCCTGCCAAAATTAATTAAATG-ATAAATTAAGAGAAAATTTCTATAAGCAATCA
* * ** * * *
31893920 AATTGTG-ACAAAATCGACTGTCATGGAAAACTACCCAA-CCAGACTGCCCTGCCAAAATTTGAT
65 AATTG-GAACGAAATGGACTGTCATGCCAAACTA-CCAAGCCAAACTGCCCTGCCAATATTTGCT
* ** * * * * * *
31893983 TAAATTGAAAATTGAGAGGACATTTCTATAAGCAAT-AAATTTGCGACA--AAATGGATTGTCAT
128 TCAATACAAAATTAAGAGCAAATTTCTATAAGTATTCAAA-TTG-GA-AGGAAATGGACTGTCAT
*
31894045 GCTAAACTAC-C-
190 GCCAAACTACTCT
* * * ** * *
31894056 ATGCCAAAACTACCCTGCTAATATTTTCTTAAATGCA-AAATTCAGAGAACATTTCTATTAA-CA
1 A-GCC-AAACTGCCCTGCCAA-AATTAATTAAATG-ATAAATTAAGAGAAAATTTCTA-TAAGCA
* * *
31894119 TTCAAATTGGAACGAAATGGAC--T-AT------C-A-C-A-CCAAACTACTCTGCCAA-ATTTG
61 ATCAAATTGGAACGAAATGGACTGTCATGCCAAACTACCAAGCCAAACTGCCCTGCCAATATTTG
* * * * * * *
31894170 ATTGAATGA-AAAATTAAGAG-AACATTTCTATACGTATTAAAATTGGGATGAAATGGACTGTAA
126 CTTCAAT-ACAAAATTAAGAGCAA-ATTTCTATAAGTATTCAAATTGGAAGGAAATGGACTGTCA
*
31894233 TGCCAAACTAC-CC
189 TGCCAAACTACTCT
* * * * *
31894246 AGCCAAACCGCCCTGCCAAAATTAGATTGAATGCA-AAATTAATA-AGACATTTCTATAAGCATT
1 AGCCAAACTGCCCTGCCAAAATTA-ATTAAATG-ATAAATTAAGAGA-AAATTTCTATAAGCAAT
* * * * * * *
31894309 CAAATTAGG-AGGGAATTGA---T--TG------T--CAGGCCAAACTGCCTTGCTAA-AATT-C
63 CAAATT-GGAACGAAATGGACTGTCATGCCAAACTACCAAGCCAAACTGCCCTGCCAATATTTGC
* * * * * * * * * *
31894358 ATTGAATGCAAAATTAAGAGGACATTTCTCTAAGCATTCAAATTGGGACGAAATGGACTATCTTG
127 -TTCAATACAAAATTAAGAGCAAATTTCTATAAGTATTCAAATTGGAAGGAAATGGACTGTCATG
31894423 CCAAACTACTC-
191 CCAAACTACTCT
* * * ** * * ** * * * ** *
31894434 ATCCAAACTTCCCTACCAAAATTTGGTTGAATGCA-AATTTTTGAGGACATTTTTATAATTATTC
1 AGCCAAACTGCCCTGCCAAAA-TTAATTAAATG-ATAAATTAAGAGAAAATTTCTATAAGCAATC
* * * * * * *
31894498 AAATTGGGACGAAATGAACTGTCATTCCAAACTACCTAG-CAAACAGCCCTGCCAA-AATTGATT
64 AAATTGGAACGAAATGGACTGTCATGCCAAACTACCAAGCCAAACTGCCCTGCCAATATTTGCTT
* * * ** * * *
31894561 GAA-AGCAAAAATAAGAGGACGTTTATATAAGCATTCAAATTGCGACA--AAATGG-CATATCAT
129 CAATA-CAAAATTAAGAGCAAATTTCTATAAGTATTCAAATTG-GA-AGGAAATGGAC-TGTCAT
**
31894622 GGAAAACTAC-CT
190 GCCAAACTACTCT
* * ** * * * *
31894634 AACCAAACTACTCC-GCCAAAATTTGCTTAAATGGA-AAATTAAGAGGACATTTTTATAAGCATT
1 AGCCAAACTGC-CCTGCCAAAA-TTAATTAAAT-GATAAATTAAGAGAAAATTTCTATAAGCAAT
* * * * * * ** * * *
31894697 CAATTTGGGACGAAATGGATTGCCATGACAAACTGCCCTGCCAAACTACCCAGCCAATATTTGCC
63 CAAATTGGAACGAAATGGACTGTCATGCCAAACTACCAAGCCAAACTGCCCTGCCAATATTTGCT
* * * ** * * * ** **
31894762 TGAATGCAAAATAAAGAAAAAATGTCTATTAGCATTCAAATTGGAACAAAATAAACTGTCATGCC
128 TCAATACAAAATTAAGAGCAAATTTCTATAAGTATTCAAATTGGAAGGAAATGGACTGTCATGCC
31894827 AAA
193 AAA
31894830 ATTTGATTTA
Statistics
Matches: 1616, Mismatches: 360, Indels: 306
0.71 0.16 0.13
Matches are distributed among these distances:
173 3 0.00
174 7 0.00
175 128 0.08
176 26 0.02
177 4 0.00
178 3 0.00
179 1 0.00
180 1 0.00
182 1 0.00
183 5 0.00
184 1 0.00
185 5 0.00
186 3 0.00
187 14 0.01
188 279 0.17
189 159 0.10
190 23 0.01
191 4 0.00
192 5 0.00
193 3 0.00
194 6 0.00
195 1 0.00
197 1 0.00
198 1 0.00
199 7 0.00
200 275 0.17
201 426 0.26
202 171 0.11
203 50 0.03
204 3 0.00
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (202 bp):
AGCCAAACTGCCCTGCCAAAATTAATTAAATGATAAATTAAGAGAAAATTTCTATAAGCAATCAA
ATTGGAACGAAATGGACTGTCATGCCAAACTACCAAGCCAAACTGCCCTGCCAATATTTGCTTCA
ATACAAAATTAAGAGCAAATTTCTATAAGTATTCAAATTGGAAGGAAATGGACTGTCATGCCAAA
CTACTCT
Found at i:31893069 original size:87 final size:88
Alignment explanation
Indices: 31892813--31893070 Score: 292
Period size: 88 Copynumber: 2.9 Consensus size: 88
31892803 GGAAACTGCC
* * * * * *
31892813 CTGCCAATATTTGCTTCAATACAAAATTAAGAGCACATTTCTATTAGTATTCAAATTGGGACGGA
1 CTGCCAAAATTTGATTGAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC-GA
* *
31892878 AA-GGACTGTCATGCCAAATTACT
65 AATGGACTATCATGCCAAACTACT
* * *
31892901 CTGCCAAAATTTGATTTAATACAAAATTAAGAGGACATTTCTATAAGCATTTAAAATGGGACGAA
1 CTGCCAAAATTTGATTGAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAA
* * *
31892966 ATTGA-TAGTCAAGCCAAACTGCT
66 ATGGACTA-TCATGCCAAACTACT
* *
31892989 CTGCTAAAA-TTGATTGAATGA-TAAATTAAGAGGACATTTCTATAAGCATTCAAATTGAGG-CG
1 CTGCCAAAATTTGATTGAAT-ACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTG-GGACG
*
31893051 AAATGGACTATCTTGCCAAA
64 AAATGGACTATCATGCCAAA
31893071 ATACCCAACC
Statistics
Matches: 144, Mismatches: 21, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
87 63 0.44
88 81 0.56
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (88 bp):
CTGCCAAAATTTGATTGAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAA
ATGGACTATCATGCCAAACTACT
Found at i:31893409 original size:678 final size:667
Alignment explanation
Indices: 31892498--31894813 Score: 2149
Period size: 678 Copynumber: 3.4 Consensus size: 667
31892488 AATTGATTGT
* * * * * * * *
31892498 CAAGCCAAACTGCCTTGCTAAAATTAATT-AAATG-ATAAATTAAGAGAAAATTTCTATAAGCAT
1 CAAGCCAAATTGCCCTGCCAAAATTGATTGAAA-GCA-AAACTAAGAGGACATTTATATAAGCAT
* * * * *
31892561 TCAAATTGGGACGAAATTGACTGTCATGCCAAACTACCAAGCCAAACTGCCCTGCTAATATTTGG
64 TCAAATT-GGACGAAATAGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAA-A-ATGA
* * * * * **
31892626 TTGAATGCAAATTTAAGAGGAAATTTTTATAAGTATTCATATTGGAATGAAATGGACTGT-ATGC
126 TTGAATGCAAAATTAAGAGGAAATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGC
* *
31892690 CAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
191 AAAACTACCCAGCCAAACTGCCCTG-CAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * *
31892755 TGAGTAATCAATTTGGAACGAAATGGATTGTCATGTCAATATTCTCTAGGAAACTGCCCTGCCAA
255 TAAGCATTCAATTTGGAACGAAATGGATTGTCATGTCAATA--C-CT--GAAACTACCCTGCCAA
* *
31892820 TATTTGCTTCAATACAAAATTAAGAGCACATTTCTATTAGTATTCAAATTGGGACGGAAA-GGAC
315 TATTTGCTTGAATACAAAATTAAGAGCACATTTCTATTAGTATTAAAATTGGGAC-GAAATGGAC
*
31892884 TGTCATGCCAAATTACTCTGCCAAAATTTGATTTAATACAAAATTAAGAGGACATTTCTATAAGC
379 TGTCATGCCAAATTACTCTGCCAAAATTTGATTTAATACAAAATTAAGAAGACATTTCTATAAGC
* * *
31892949 ATTTAAAATGGGACGAAATTGATAGTCAAGCCAAACTGCTCTGCTAAAATTGATTGAATGATAAA
444 ATTCAAATTAGGACGAAATTGAT-GTCAAGCCAAACTGC-CTGCTAAAATTGATTGAATGATAAA
*
31893014 TTAAGAGGACATTTCTATAAGCATTCAAATTGAGG-CGAAATGGACTATCTTGCCAAAATACCCA
507 TTAAGAGGACATTTCTATAAGCATTCAAATTG-GGACGAAATGGACTATCTTGCCAAACTACCCA
** * * *
31893078 ACCAAACTGTCCTGCCAAAATTTTATTGACTGCAAATTTAAGAGGACATTTTTATAAGAATTTAT
571 ACCAAACTGTCCTGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGAATTCAA
* *
31893143 ATTGAGATGAAATGGACTGTCATGCCAAACTAA
636 ATTG-GATGAAATGGACTGTCATACCAAACTAC
* *** * * *
31893176 CAAGCCAAATTGCCCTGCCAAAATTTGATTGAATGC-ACTTTAATATGACACTTT-TATAGGCAT
1 CAAGCCAAATTGCCCTGCCAAAA-TTGATTGAAAGCAAAACTAAGAGGACA-TTTATATAAGCAT
* * *
31893239 TCAAATTAGGATGAAATAGACTGTCATGCCAAACTACCCAGCCAAACTGCGCTACCAAAATGAAT
64 TCAAATT-GGACGAAATAGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATG-AT
* ** ** * *
31893304 TGAATGCAAAAATAATTGGGTATTTCTATAAGCATTCACATTGGGACAAAATGGGCTGTCATGCA
127 TGAATGCAAAATTAAGAGGAAATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCA
* * * *
31893369 AAACTACCCAACCAAACTGCCTTGTCAAAATTTGATTGAATAG-AAAATTAACAGGATATTTCTA
192 AAACTACCCAGCCAAACTGCCCTG-CAAAATTTGATTGAAT-GCAAAATTAAGAGGACATTTCTA
** *
31893433 TAAGCATTCAATTTGGCAA-GAAATGGATTGTCATGTCGAACTACCCTGCCAAACTACCCAACAA
255 TAAGCATTCAATTTGG-AACGAAATGGATTGTCATGTC-AA-TA-CCTG--AAACTACCCTGCCA
* * * * * *
31893497 ATATTTGCTTGAGTGCAAAATTAA-AACGACATTTCTATTAGCATTTAAATTGGAACGAAATGGA
314 ATATTTGCTTGAATACAAAATTAAGAGC-ACATTTCTATTAGTATTAAAATTGGGACGAAATGGA
* * * * * *
31893561 CTGCCATGCCAAACTACTTTGGCAAAATTTGATTTAATTCAAAATTAAGACGACATTTCTATAAG
378 CTGTCATGCCAAATTACTCTGCCAAAATTTGATTTAATACAAAATTAAGAAGACATTTCTATAAG
* *
31893626 TATTCAAATTTGGACGAAATTGACTGTCAAGCCAAACTGCCCTGCTAAAATTGATTGAATGATAA
443 CATTCAAATTAGGACGAAATTGA-TGTCAAGCCAAACTG-CCTGCTAAAATTGATTGAATGATAA
* * **
31893691 ATTAAAAGGACATTTCTATAAGCATTCAATTTGGGACGAAATGGACGGT-TATGCCAAACTACCC
506 ATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTATCT-TGCCAAACTACCC
* * * *
31893755 AGCCAAACTGTCCTGCCAAAATTTGGTTGAATGCAAATTTAAGAGAACATTTTTTTAAGCATTCA
570 AACCAAACTGTCCTGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGAATTCA
* * * * *
31893820 AATTTGGTTGAAATAGACTATTATACAAAACTAC
635 AA-TTGGATGAAATGGACTGTCATACCAAACTAC
* * * * *
31893854 CAAGCTAAATTGCCTTGCCAAAATTGATTAAAAGCAAAACTAAGAGGCCATTTATATAAGCGTTC
1 CAAGCCAAATTGCCCTGCCAAAATTGATTGAAAGCAAAACTAAGAGGACATTTATATAAGCATTC
* * ** * *
31893919 AAATTGTGACAAAATCGACTGTCATGGAAAACTACCCAACCAGACTGCCCTGCCAAAATTTGATT
66 AAATTG-GACGAAATAGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAA--TGATT
* * * * * *
31893984 AAATTG-AAAATTGAGAGGACATTTCTATAAGCAAT-AAATTTGCGACAAAATGGATTGTCATGC
128 GAA-TGCAAAATTAAGAGGAAATTTCTATAAGCATTCAAA-TTGGGACAAAATGGACTGTCATGC
* * * ** * * *
31894047 TAAACTA-CCATGCCAAAACTACCCTGCTAATATTTTCTTAAATGCAAAATTCAGAGAACATTTC
191 AAAACTACCCA-GCC-AAACTGCCCTGC-AAAATTTGATTGAATGCAAAATTAAGAGGACATTTC
* * * *
31894111 TATTAA-CATTCAAATTGGAACGAAATGGA----C-TATC-ACACC--AAACTACTCTGCCAA-A
253 TA-TAAGCATTCAATTTGGAACGAAATGGATTGTCATGTCAATACCTGAAACTACCCTGCCAATA
* * *
31894166 TTTGATTGAATGA-AAAATTAAGAGAACATTTCTA-TACGTATTAAAATTGGGATGAAATGGACT
317 TTTGCTTGAAT-ACAAAATTAAGAGCACATTTCTATTA-GTATTAAAATTGGGACGAAATGGACT
* * * * * * *
31894229 GTAATGCCAAACTACCCAGCCAAACCGCCCTGCCAAAATTAGATTGAATGCAAAATTAATAAGAC
380 GTCATGCCAAA-T---------TA---CTCTGCCAAAATTTGATTTAATACAAAATTAAGAAGAC
* * * *
31894294 ATTTCTATAAGCATTCAAATTAGGAGGGAATTGATTGTCAGGCCAAACTGCCTTGCTAAAATTCA
432 ATTTCTATAAGCATTCAAATTAGGACGAAATTGA-TGTCAAGCCAAACTGCC-TGCTAAAATTGA
*
31894359 TTGAATGCA-AAATTAAGAGGACATTTCTCTAAGCATTCAAATTGGGACGAAATGGACTATCTTG
495 TTGAATG-ATAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTATCTTG
* * * **
31894423 CCAAACTACTCATCCAAACT-TCCCTACCAAAATTTGGTTGAATGCAAATTTTTGAGGACATTTT
559 CCAAACTACCCAACCAAACTGT-CCTGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTT
** * * *
31894487 TATAATTATTCAAATTGGGACGAAATGAACTGTCATTCCAAACTAC
623 TATAAGAATTCAAATT-GGATGAAATGGACTGTCATACCAAACTAC
* ** * *
31894533 CTAG-CAAACAGCCCTGCCAAAATTGATTGAAAGCAAAAATAAGAGGACGTTTATATAAGCATTC
1 CAAGCCAAATTGCCCTGCCAAAATTGATTGAAAGCAAAACTAAGAGGACATTTATATAAGCATTC
* * * ** * * * *
31894597 AAATTGCGACAAAAT-GGCATATCATGGAAAACTACCTAACCAAACTACTCC-GCCAAAATTTGC
66 AAATTG-GACGAAATAGAC-TGTCATGCCAAACTACCCAGCCAAACTGC-CCTGCCAAAA--TGA
* * * * * * * *
31894660 TTAAATGGAAAATTAAGAGGACATTTTTATAAGCATTCAATTTGGGACGAAATGGATTGCCATG-
126 TTGAATGCAAAATTAAGAGGAAATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGC
* * * * * ** * ** * *
31894724 ACAAACTGCCCTGCCAAACTACCCAGCCAATATTTGCCTGAATGCAAAATAAAGAAAAAATGTCT
191 A-AAACTACCCAGCCAAACTGCCCTG-CAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * *
31894789 ATTAGCATTCAAATTGGAACAAAAT
254 ATAAGCATTCAATTTGGAACGAAAT
31894814 AAACTGTCAT
Statistics
Matches: 1350, Mismatches: 227, Indels: 123
0.79 0.13 0.07
Matches are distributed among these distances:
665 2 0.00
666 58 0.04
667 12 0.01
671 2 0.00
672 1 0.00
673 1 0.00
675 3 0.00
676 7 0.01
677 134 0.10
678 744 0.55
679 317 0.23
680 66 0.05
681 3 0.00
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (667 bp):
CAAGCCAAATTGCCCTGCCAAAATTGATTGAAAGCAAAACTAAGAGGACATTTATATAAGCATTC
AAATTGGACGAAATAGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATGATTGAA
TGCAAAATTAAGAGGAAATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCAAAAC
TACCCAGCCAAACTGCCCTGCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA
TTCAATTTGGAACGAAATGGATTGTCATGTCAATACCTGAAACTACCCTGCCAATATTTGCTTGA
ATACAAAATTAAGAGCACATTTCTATTAGTATTAAAATTGGGACGAAATGGACTGTCATGCCAAA
TTACTCTGCCAAAATTTGATTTAATACAAAATTAAGAAGACATTTCTATAAGCATTCAAATTAGG
ACGAAATTGATGTCAAGCCAAACTGCCTGCTAAAATTGATTGAATGATAAATTAAGAGGACATTT
CTATAAGCATTCAAATTGGGACGAAATGGACTATCTTGCCAAACTACCCAACCAAACTGTCCTGC
CAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGAATTCAAATTGGATGAAATGGA
CTGTCATACCAAACTAC
Found at i:31893635 original size:88 final size:85
Alignment explanation
Indices: 31893512--31893754 Score: 272
Period size: 87 Copynumber: 2.8 Consensus size: 85
31893502 TGCTTGAGTG
* * *
31893512 CAAAATTAAAACGACATTTCTATTAGCATTTAAATTGGAACGAAATGGACTGCCATGCCAAACTA
1 CAAAATTAAAACGACATTTCTATAAGCATTCAAATTGG-ACGAAATGGACTGTCATGCCAAACTA
** *
31893577 CTTTGGC-AAAATTTGATTTAATT
65 CCCT-GCTAAAA-TTGATTGAA-T
* * * * *
31893600 CAAAATTAAGACGACATTTCTATAAGTATTCAAATTTGGACGAAATTGACTGTCAAGCCAAACTG
1 CAAAATTAAAACGACATTTCTATAAGCATTCAAA-TTGGACGAAATGGACTGTCATGCCAAACTA
31893665 CCCTGCTAAAATTGATTGAAT
65 CCCTGCTAAAATTGATTGAAT
* * * * *
31893686 GATAAATTAAAAGGACATTTCTATAAGCATTCAATTTGGGACGAAATGGACGGTTATGCCAAACT
1 CA-AAATTAAAACGACATTTCTATAAGCATTCAAATT-GGACGAAATGGACTGTCATGCCAAACT
31893751 ACCC
64 ACCC
31893755 AGCCAAACTG
Statistics
Matches: 130, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
86 4 0.03
87 64 0.49
88 58 0.45
89 4 0.03
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (85 bp):
CAAAATTAAAACGACATTTCTATAAGCATTCAAATTGGACGAAATGGACTGTCATGCCAAACTAC
CCTGCTAAAATTGATTGAAT
Found at i:31893718 original size:87 final size:88
Alignment explanation
Indices: 31893479--31893754 Score: 285
Period size: 88 Copynumber: 3.1 Consensus size: 88
31893469 CGAACTACCC
** * * * * *
31893479 TGCCAAACTACCC-AACAAATATTTGCTTGAGTGCAAAATTAAAACGACATTTCTATTAGCATTT
1 TGCCAAACTACCCTGGCAAA-ATTTGATTGAATTCAAAATTAAAACGACATTTCTATAAGCATTC
*
31893543 AAA-TTGGAACGAAATGGACTGCCA
65 AAATTTGG-ACGAAATGGACTGTCA
** * * *
31893567 TGCCAAACTACTTTGGCAAAATTTGATTTAATTCAAAATTAAGACGACATTTCTATAAGTATTCA
1 TGCCAAACTACCCTGGCAAAATTTGATTGAATTCAAAATTAAAACGACATTTCTATAAGCATTCA
*
31893632 AATTTGGACGAAATTGACTGTCA
66 AATTTGGACGAAATGGACTGTCA
* * * *
31893655 AGCCAAACTGCCCT-GCTAAAA-TTGATTGAA-TGATAAATTAAAAGGACATTTCTATAAGCATT
1 TGCCAAACTACCCTGGC-AAAATTTGATTGAATTCA-AAATTAAAACGACATTTCTATAAGCATT
* *
31893717 C-AATTTGGGACGAAATGGACGGTTA
64 CAAATTT-GGACGAAATGGACTGTCA
31893742 TGCCAAACTACCC
1 TGCCAAACTACCC
31893755 AGCCAAACTG
Statistics
Matches: 155, Mismatches: 28, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
86 7 0.05
87 62 0.40
88 78 0.50
89 8 0.05
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.29
Consensus pattern (88 bp):
TGCCAAACTACCCTGGCAAAATTTGATTGAATTCAAAATTAAAACGACATTTCTATAAGCATTCA
AATTTGGACGAAATGGACTGTCA
Found at i:31894239 original size:87 final size:87
Alignment explanation
Indices: 31894087--31894252 Score: 201
Period size: 87 Copynumber: 1.9 Consensus size: 87
31894077 TATTTTCTTA
* * * *
31894087 AATGCAAAATTCAGAGAACATTTCTATTAACATTCAAATTGGAACGAAATGGACTATCACACCAA
1 AATGAAAAATTAAGAGAACATTTCTATTAACATTAAAATTGGAACGAAATGGACTATAACACCAA
* *
31894152 ACTACTCTGCCAAATTTGATTG
66 ACTACCCAGCCAAATTTGATTG
* * * **
31894174 AATGAAAAATTAAGAGAACATTTCTA-T-ACGTATTAAAATTGGGATGAAATGGACTGTAATGCC
1 AATGAAAAATTAAGAGAACATTTCTATTAAC--ATTAAAATTGGAACGAAATGGACTATAACACC
31894237 AAACTACCCAGCCAAA
64 AAACTACCCAGCCAAA
31894253 CCGCCCTGCC
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
85 2 0.03
86 1 0.02
87 63 0.95
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.26
Consensus pattern (87 bp):
AATGAAAAATTAAGAGAACATTTCTATTAACATTAAAATTGGAACGAAATGGACTATAACACCAA
ACTACCCAGCCAAATTTGATTG
Found at i:31894426 original size:87 final size:88
Alignment explanation
Indices: 31894247--31894429 Score: 224
Period size: 87 Copynumber: 2.1 Consensus size: 88
31894237 AAACTACCCA
* * *
31894247 GCCAAACCGCCCTGCCAAAATTAGATTGAATGCAAAATTAATAAGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTACATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAA
* * * * *
31894312 ATTAGGAGGGAATTGATTGTCAG
66 ATTAGGACGAAATGGACTATCAG
* * * *
31894335 GCCAAACTGCCTTGCTAAAATT-CATTGAATGCAAAATTAAGAGGACATTTCTCTAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTACATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAA
* **
31894399 ATTGGGACGAAATGGACTATCTT
66 ATTAGGACGAAATGGACTATCAG
31894422 GCCAAACT
1 GCCAAACT
31894430 ACTCATCCAA
Statistics
Matches: 80, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
87 61 0.76
88 19 0.24
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (88 bp):
GCCAAACTGCCCTGCCAAAATTACATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAA
ATTAGGACGAAATGGACTATCAG
Found at i:31894530 original size:188 final size:184
Alignment explanation
Indices: 31893968--31894713 Score: 516
Period size: 188 Copynumber: 3.9 Consensus size: 184
31893958 CCAGACTGCC
* * * * * *
31893968 CTGCCAAAATTTGATTAAATTG-AAAATTGAGAGGACATTTCTATAAGCAATAAATTTGCGACAA
1 CTGCCAAAA-TTCATTGAA-TGAAAAATTAAGAGGACATTTCTATAAGCATTAAA-TTGGGACGA
* * * * ** *
31894032 AATGGATTGTCATGCTAAACTACCATGCCAAAACTACCCTGCTAATATTTTCTTAAATGCAAAAT
63 AATGGACTGTCATGCCAAACTACCAT-CC-AAACTACCCTGCCAAAATTTGATTGAATGC-AAAT
* * * *
31894097 TCA-GAGAACATTTCTATTAACATTCAAATTGGAACGAAATGGACTATCACACCAAACTACT
125 TTATGAGGACATTTCTA-TAACATTCAAATTGGGACGAAAT-GACTGTCACACCAAACTACT
* * * * * *
31894158 CTGCCAAATTTGATTGAATGAAAAATTAAGAGAACATTTCTATACGTATTAAAATTGGGATGAAA
1 CTGCCAAAATTCATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATT-AAATTGGGACGAAA
* * ** * *
31894223 TGGACTGTAATGCCAAACTACCCAGCCAAACCGCCCTGCCAAAATTAGATTGAATGCAAAATTAA
65 TGGACTGTCATGCCAAACTA-CCATCCAAACTACCCTGCCAAAATTTGATTGAATGC-AAATTTA
* * * * * ** *
31894288 T-AAGACATTTCTATAAGCATTCAAATTAGGAGGGAATTGATTGTCAGGCCAAACTGC-
128 TGAGGACATTTCTATAA-CATTCAAATTGGGA-CGAAATGACTGTCACACCAAACTACT
* * *
31894345 CTTGCTAAAATTCATTGAATGCAAAATTAAGAGGACATTTCTCTAAGCATTCAAATTGGGACGAA
1 C-TGCCAAAATTCATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATT-AAATTGGGACGAA
* * * * * *
31894410 ATGGACTATCTTGCCAAACTACTCATCCAAACTTCCCTACCAAAATTTGGTTGAATGCAAATTTT
64 ATGGACTGTCATGCCAAACTAC-CATCCAAACTACCCTGCCAAAATTTGATTGAATGCAAATTTA
* * **
31894475 TGAGGACATTTTTATAATTATTCAAATTGGGACGAAATGAACTGTCATTCCAAACTACCT
128 TGAGGACATTTCTATAA-CATTCAAATTGGGACGAAATG-ACTGTCACACCAAACTA-CT
* * * *
31894535 AGCAAACAGCCCTGCCAAAATTGATTGAAAGCAAAAA-TAAGAGGACGTTTATATAAGCATTCAA
1 -----------CTGCCAAAATTCATTGAATG-AAAAATTAAGAGGACATTTCTATAAGCATT-AA
* * * ** * *
31894599 ATTGCGACAAAATGG-CATATCATGGAAAACTACCTAACCAAACTACTCC-GCCAAAATTTGCTT
53 ATTGGGACGAAATGGAC-TGTCATGCCAAACTACC-ATCCAAACTAC-CCTGCCAAAATTTGATT
* * * * * *
31894662 AAATGGAAAATTAAGAGGACATTTTTATAAGCATTCAATTTGGGACGAAATG
115 GAATGCAAATTTATGAGGACATTTCTATAA-CATTCAAATTGGGACGAAATG
31894714 GATTGCCATG
Statistics
Matches: 439, Mismatches: 90, Indels: 44
0.77 0.16 0.08
Matches are distributed among these distances:
187 16 0.04
188 205 0.47
189 64 0.15
190 14 0.03
199 2 0.00
200 131 0.30
201 7 0.02
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (184 bp):
CTGCCAAAATTCATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTAAATTGGGACGAAAT
GGACTGTCATGCCAAACTACCATCCAAACTACCCTGCCAAAATTTGATTGAATGCAAATTTATGA
GGACATTTCTATAACATTCAAATTGGGACGAAATGACTGTCACACCAAACTACT
Done.