Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 103 of 240
Found at i:31895040 original size:101 final size:98
Alignment explanation
Indices: 31894898--31895167 Score: 290
Period size: 101 Copynumber: 2.7 Consensus size: 98
31894888 TTGTCTGTTA
* * *
31894898 AGCCAAACTGCCCTGCTAAAAGTGATTGAATG-ATAAATTAAGAGGACGTTTATATAAGAATTCA
1 AGCCAAACTG-CCTGCCAAAATTGATTGAATGCA-AAATTAAGAGGACATTTATATAA-AATTCA
* * ** *
31894962 AATTGGGATGAAATGGGTTGCAATGACAAACTACCC
63 AATTGAGACGAAATGGACTACAATGACAAACTACCC
* * * *
31894998 AGCCAAACTGCCATGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAATCATTCA
1 AGCCAAACTGCC-TGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTATATAA-AATTCA
** **
31895063 AATTGAGACGAAATGGACTATTATTCCAAACTACCC
63 AATTGAGACGAAATGGACTACAATGACAAACTACCC
* * *
31895099 AGCCAAACTGCTCTGCCAAAATTGATTGAAAGCAAAAATAAGAGGAAATTTATATAAATATTCAA
1 AGCCAAACTGC-CTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTATATAAA-ATTCAA
31895164 ATTG
64 ATTG
31895168 TAACAAATAG
Statistics
Matches: 141, Mismatches: 24, Indels: 10
0.81 0.14 0.06
Matches are distributed among these distances:
99 2 0.01
100 57 0.40
101 80 0.57
102 2 0.01
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (98 bp):
AGCCAAACTGCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTATATAAAATTCAAAT
TGAGACGAAATGGACTACAATGACAAACTACCC
Found at i:31895290 original size:88 final size:87
Alignment explanation
Indices: 31895112--31895457 Score: 299
Period size: 87 Copynumber: 4.0 Consensus size: 87
31895102 CAAACTGCTC
* * * * * * ** *
31895112 TGCCAAAATTGATTGAAAGCAAAAATAAGAGGAAATTTATATAAATATTCAAATTGTAAC-AAAT
1 TGCCAAATTTGATTGAATGCAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGAACGAAAT
* * *
31895176 AGACTGTCATGCAAAACTGCGC-
66 GGACTGTCATGCCAAACTAC-CT
** * *
31895198 TGCCAATATTTGCGTGAGA-GCAAAATTAAAAGGACATTTTTACT-AGCATTTAAATTGGAACGA
1 TGCCAA-ATTTGATTGA-ATGCAAAATTAAAAGGACATTTCTA-TAAGCATTCAAATTGGAACGA
*
31895261 AATGGACTGTCATGCCAAACTACTT
63 AATGGACTGTCATGCCAAACTACCT
* * * * * *
31895286 TGCCAAAATTTGATTCAATGCAGAATTAATAGGACAATTCTATAAGCATTCAAATTGGGATGAAA
1 TGCC-AAATTTGATTGAATGCAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGAACGAAA
** *
31895351 TTAACTGTCAAGCCAAACTACCT
65 TGGACTGTCATGCCAAACTACCT
*** * * *
31895374 TAATAAAATTGATTGAATG-ATAAATTAAGAGGACATTTCTATAAGCAATCAAATTGCG-ACGAA
1 TGCCAAATTTGATTGAATGCA-AAATTAAAAGGACATTTCTATAAGCATTCAAATTG-GAACGAA
31895437 ATGGACTGTCATGCCAAACTA
64 ATGGACTGTCATGCCAAACTA
31895458 ACCAGCTAAA
Statistics
Matches: 208, Mismatches: 42, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
86 7 0.03
87 107 0.51
88 92 0.44
89 2 0.01
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (87 bp):
TGCCAAATTTGATTGAATGCAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGAACGAAAT
GGACTGTCATGCCAAACTACCT
Found at i:31895697 original size:97 final size:97
Alignment explanation
Indices: 31895405--31896261 Score: 394
Period size: 101 Copynumber: 8.8 Consensus size: 97
31895395 AAATTAAGAG
* * * *
31895405 GACATTTCTATAAGCAATCAAATTGCGACGAAATGGACTGTCATGCCAAACTAACCAGCTAAACT
1 GACATTTATATAAGCATTCAAATTGCGACGAAATGGACTGTCATGCAAAACTAACCAGCCAAACT
* * * *
31895470 GCCCTGCTAAAATTTTG-TTCAATGCAAATTTAAGAG
66 GCCCTGCCAAAA-TTTGATTAAATG-AAA---AATAA
* * * *
31895506 GACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTGTCAAT-CTAAACTATCCAGCCAAAC
1 GACATTTATATAAGCATTCAAATTGCGACGAAATGGACTGTC-ATGCAAAACTAACCAGCCAAAC
* * * *
31895570 TGCCCTGCCAATA-TTAATCAAAAGCAAAAATAA
65 TGCCCTGCCAAAATTTGATTAAATG-AAAAATAA
* * ** * * *
31895603 GACATTTATATAAGGATTCAAATTGTGAAAAAATAGACTGTCATGCAAAACTACCCAACCAAACT
1 GACATTTATATAAGCATTCAAATTGCGACGAAATGGACTGTCATGCAAAACTAACCAGCCAAACT
* *
31895668 GCCTTGCCAAAATTTGATTAAATGGAAAATTAAGA
66 GCCCTGCCAAAATTTGATTAAAT-GAAAAAT-A-A
* * * * * * * * *
31895703 GGACATTTCTATAAGCATACAATTTGGGATGAAATGGATTGTCATGTC-AACCTACCCTGCCAAG
1 -GACATTTATATAAGCATTCAAATTGCGACGAAATGGACTGTCATG-CAAAACTAACCAGCCAA-
* ** * * *
31895767 ATTTTCTTG----AA--TGCA--AAAT-AAAGA-GA
63 ACTGCCCTGCCAAAATTTG-ATTAAATGAAAAATAA
* *
31895793 -ACATTTCTATTAGCATTCAAATTG-GAACGAAATGGACT-T--T-C---A-T-----GCCAAAC
1 GACATTTATATAAGCATTCAAATTGCG-ACGAAATGGACTGTCATGCAAAACTAACCAGCCAAAC
* * * *
31895843 TACTCTGCCAATATTTGATTGAATGAAAAATTAAGA
65 TGCCCTGCCAAAATTTGATTAAATGAAAAA-T-A-A
* * * * * * *
31895879 GGACATTTTTGTAAGCATTCAGATTGGGACGAAATGGACTGTAATGGAAAACTACCCAGCCAAAC
1 -GACATTTATATAAGCATTCAAATTGCGACGAAATGGACTGTCATGCAAAACTAACCAGCCAAAC
* * * ***
31895944 CGCCCTGCCAAAATATGAATT-AATGCACTTTAAGA
65 TGCCCTGCCAAAATTTG-ATTAAATGAAAAAT-A-A
* * * * * * *
31895979 GAACATTTTTATAAGCATTCAAATTGGGATGAAATGGACTATAATGAAAAACTACCCAGCCAAAC
1 G-ACATTTATATAAGCATTCAAATTGCGACGAAATGGACTGTCATGCAAAACTAACCAGCCAAAC
* *
31896044 TGCCATGCCAAAA-TTGATTGAATGCAAAAATAGAA
65 TGCCCTGCCAAAATTTGATTAAATG-AAAAAT--AA
* * * * ** * *
31896079 GAATATTTATATAAGCTTTCAAATTGAGACAAAATGGGTTGTCATGCAAAACTACCCAACCAAAC
1 G-ACATTTATATAAGCATTCAAATTGCGACGAAATGGACTGTCATGCAAAACTAACCAGCCAAAC
** * *
31896144 TGCCCTATCAAAATTTGATTGAATGTAAAATTATGAG
65 TGCCCTGCCAAAATTTGATTAAATG-AAAA--AT-AA
* * * * * *
31896181 GACATTTCTATAAGCATTCAATTTGGGAAGAAATGGACTATCATGTC-AAACT-ACCTTGCCAAA
1 GACATTTATATAAGCATTCAAATTGCGACGAAATGGACTGTCATG-CAAAACTAACC-AGCCAAA
* *
31896244 CTTCCCTGCCAATATTTG
64 CTGCCCTGCCAAAATTTG
31896262 CTTGAGTGCA
Statistics
Matches: 582, Mismatches: 123, Indels: 102
0.72 0.15 0.13
Matches are distributed among these distances:
74 4 0.01
75 5 0.01
78 1 0.00
79 1 0.00
80 3 0.01
81 3 0.01
82 4 0.01
83 1 0.00
85 1 0.00
86 1 0.00
87 2 0.00
88 63 0.11
89 2 0.00
90 1 0.00
91 1 0.00
93 3 0.01
95 5 0.01
96 5 0.01
97 67 0.12
98 17 0.03
99 11 0.02
100 151 0.26
101 212 0.36
102 16 0.03
103 2 0.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (97 bp):
GACATTTATATAAGCATTCAAATTGCGACGAAATGGACTGTCATGCAAAACTAACCAGCCAAACT
GCCCTGCCAAAATTTGATTAAATGAAAAATAA
Found at i:31895825 original size:88 final size:88
Alignment explanation
Indices: 31895661--31895941 Score: 303
Period size: 88 Copynumber: 3.2 Consensus size: 88
31895651 AACTACCCAA
* * * * * * *
31895661 CCAAACTGCCTTGCCAAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATACAAT
1 CCAAACTACCCTGCCAAGATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAA
*
31895726 TTGGGATGAAATGGA-TTGTCATG
66 TTGGGACGAAATGGACTT-TCATG
* * ** * * * *
31895749 TCAACCTACCCTGCCAAGATTTTCTTGAATGCAAAATAAAGAGAACATTTCTATTAGCATTCAAA
1 CCAAACTACCCTGCCAAGATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAA
*
31895814 TTGGAACGAAATGGACTTTCATG
66 TTGGGACGAAATGGACTTTCATG
* * * * *
31895837 CCAAACTACTCTGCCAATATTTGATTGAATGAAAAATTAAGAGGACATTTTTGTAAGCATTCAGA
1 CCAAACTACCCTGCCAAGATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAA
* *
31895902 TTGGGACGAAATGGACTGTAATG
66 TTGGGACGAAATGGACTTTCATG
** *
31895925 GAAAACTACCCAGCCAA
1 CCAAACTACCCTGCCAA
31895942 ACCGCCCTGC
Statistics
Matches: 156, Mismatches: 36, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
88 154 0.99
89 2 0.01
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (88 bp):
CCAAACTACCCTGCCAAGATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAA
TTGGGACGAAATGGACTTTCATG
Found at i:31896013 original size:100 final size:98
Alignment explanation
Indices: 31895836--31896322 Score: 377
Period size: 100 Copynumber: 4.8 Consensus size: 98
31895826 GGACTTTCAT
* * * * * * *
31895836 GCCAAACTACTCTGCCAATATTTGATTGAATGAAAAATTAAGAGGACATTTTTGTAAGCATTCAG
1 GCCAAACTGCCCTGCCAA-AATTGATTGAATG--CAATTAAGAGAACATTTTTATAAGCATTCAA
* *
31895901 ATTGGGACGAAATGGACTGTAATGGAAAACTACCCA
63 ATTGGGACGAAATGGACTATAATGAAAAACTACCCA
* *
31895937 GCCAAACCGCCCTGCCAAAATATGAATT-AATGCACTTTAAGAGAACATTTTTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAAT-TG-ATTGAATGCA-ATTAAGAGAACATTTTTATAAGCATTCAA
*
31896001 ATTGGGATGAAATGGACTATAATGAAAAACTACCCA
63 ATTGGGACGAAATGGACTATAATGAAAAACTACCCA
* ** * * *
31896037 GCCAAACTGCCATGCCAAAATTGATTGAATGCAAAAATAGAAGAATATTTATATAAGCTTTCAAA
1 GCCAAACTGCCCTGCCAAAATTGATTGAATGCAATTA-AG-AGAACATTTTTATAAGCATTCAAA
* * ** * * *
31896102 TTGAGACAAAATGGGTTGTCATGCAAAACTACCCA
64 TTGGGACGAAATGGACTATAATGAAAAACTACCCA
* ** * * * *
31896137 ACCAAACTGCCCTATCAAAATTTGATTGAATGTAAAATTATGAGGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAA-TTGATTGAATG--CAATTAAGAGAACATTTTTATAAGCATTCAA
* * * ** **
31896202 TTTGGGAAGAAATGGACTATCATGTCAAACTACCTT
63 ATTGGGACGAAATGGACTATAATGAAAAACTACCCA
* * * * * * *
31896238 GCCAAACTTCCCTGCCAATATTTGCTTGAGTGCAAAATTAAGAGGAC-TTTTCCATTAA-CATTT
1 GCCAAACTGCCCTGCCAA-AATTGATTGAATGC--AATTAAGAGAACATTTT-TA-TAAGCATTC
* *
31896301 AAATTGGAACGAAATAGACTAT
61 AAATTGGGACGAAATGGACTAT
31896323 CATGCCAAAC
Statistics
Matches: 305, Mismatches: 67, Indels: 28
0.76 0.17 0.07
Matches are distributed among these distances:
98 4 0.01
99 11 0.04
100 146 0.48
101 133 0.44
102 8 0.03
103 3 0.01
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (98 bp):
GCCAAACTGCCCTGCCAAAATTGATTGAATGCAATTAAGAGAACATTTTTATAAGCATTCAAATT
GGGACGAAATGGACTATAATGAAAAACTACCCA
Found at i:31896225 original size:101 final size:101
Alignment explanation
Indices: 31895836--31896402 Score: 483
Period size: 101 Copynumber: 5.8 Consensus size: 101
31895826 GGACTTTCAT
* * * * * * *
31895836 GCCAAACTACTCTGCCAATATTTGATTGAATGAAAAATTAAGAGGACATTTTTGTAAGCATTCAG
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * *
31895901 ATTGGGACGAAATGGACTGTAATGGAAAACTACCCA
66 ATTGGGAAGAAATGGACTATCATGCAAAACTACCCA
* * ** * *
31895937 GCCAAACCGCCCTGCCAAAATATGAATT-AATGC-ACTTTAAGAGAACATTTTTATAAGCATTCA
1 GCCAAACTGCCCTGCCAAAATTTG-ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * *
31896000 AATTGGGATGAAATGGACTATAATGAAAAACTACCCA
65 AATTGGGAAGAAATGGACTATCATGCAAAACTACCCA
* * * * * *
31896037 GCCAAACTGCCATGCCAAAA-TTGATTGAATGCAAAAAT-AGAAGAATATTTATATAAGCTTTCA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAG-AGGACATTTCTATAAGCATTCA
* ** *
31896100 AATTGAGACA-AAATGGGTTGTCATGCAAAACTACCCA
65 AATTGGGA-AGAAATGGACTATCATGCAAAACTACCCA
* ** * *
31896137 ACCAAACTGCCCTATCAAAATTTGATTGAATGTAAAATTATGAGGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* **
31896202 TTTGGGAAGAAATGGACTATCATGTC-AAACTACCTT
66 ATTGGGAAGAAATGGACTATCATG-CAAAACTACCCA
* * * * * * *
31896238 GCCAAACTTCCCTGCCAATATTTGCTTGAGTGCAAAATTAAGAGGACTTTTCCATTAA-CATTTA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA-TAAGCATTCA
* *
31896302 AATT-GGAACGAAATAGACTATCATGCCAAACT-----
65 AATTGGGAA-GAAATGGACTATCATGCAAAACTACCCA
* *
31896334 -----ACT---CTGCCAAAATTTGATTTAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
*
31896391 ATTGGGATGAAA
66 ATTGGGAAGAAA
31896403 CTGACTGACA
Statistics
Matches: 381, Mismatches: 71, Indels: 41
0.77 0.14 0.08
Matches are distributed among these distances:
87 3 0.01
88 49 0.13
89 3 0.01
91 3 0.01
98 3 0.01
99 9 0.02
100 149 0.39
101 154 0.40
102 8 0.02
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (101 bp):
GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
ATTGGGAAGAAATGGACTATCATGCAAAACTACCCA
Found at i:31896393 original size:88 final size:86
Alignment explanation
Indices: 31896237--31896512 Score: 238
Period size: 88 Copynumber: 3.2 Consensus size: 86
31896227 CAAACTACCT
* * * * * * * *
31896237 TGCCAAACTTCCCTGCCAATATTTGCTTGAGTGCAAAATTAAGAGGACTTTTCCATTAA-CATTT
1 TGCCAAAC-TACCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTA-TAAGCATTC
*
31896301 AAATTGGAACGAAATAGACTATCA
64 AAATTGGGACGAAAT-GACTATCA
*
31896325 TGCCAAACTACTCTGCCAAAATTTGATTTAATGCAAAATTAAGAAGACATTTCTATAAGCATTCA
1 TGCCAAACTAC-CTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCA
*
31896390 AATTGGGATGAAACTGACTGA-CA
65 AATTGGGACGAAA-TGACT-ATCA
* * * * * *
31896413 AGCCAAACCACCTTGCTAAAA-TTGATTGATTG-ATAAATTAAGATA-ACATTTTTACAAGCATT
1 TGCCAAACTACC-TGCCAAAATTTGATTGAATGCA-AAATTAAGA-AGACATTTCTATAAGCATT
* * *
31896475 CAAATTGGGACAAAATGGACTGTAA
63 CAAATTGGGACGAAAT-GACTATCA
*
31896500 TGCCAAACAACCT
1 TGCCAAACTACCT
31896513 AGTCTAATTG
Statistics
Matches: 155, Mismatches: 24, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
86 3 0.02
87 67 0.43
88 83 0.54
89 2 0.01
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (86 bp):
TGCCAAACTACCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAA
ATTGGGACGAAATGACTATCA
Found at i:31896639 original size:278 final size:270
Alignment explanation
Indices: 31896161--31896809 Score: 836
Period size: 278 Copynumber: 2.4 Consensus size: 270
31896151 TCAAAATTTG
* * * * *
31896161 ATTGAATG-TAAAATTATGAGGACATTTCTATAAGCATTCAATTTGGGAAGAAATGGACTATCAT
1 ATTGAATGAT-AAATTAAGAGAACATTTCTACAAGCATTCAAATTGGGAA-AAATGGACTGTCAT
* * * *
31896225 GTCAAACTACCTTGCCAAACTTCCCTGCCAATATTTGCTTGAGTGCAAAATTAAGAGGACTTTTC
64 GCCAAACAACCTAGCCAAACTTCCCTGCCAATATTTGCTTGAGTGCAAAATTAAAAGGACTTTTC
31896290 CATTAACATTTAAATTGGAACGAAATAGACTATCATGCCAAACTACTCTGCCAAAATTTGATTTA
129 CATTAACATTTAAATTGGAACGAAATAGACTATCATGCCAAACTACTCTGCCAAAATTTGATTTA
**
31896355 ATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGATGAAACTGACTGACAAGCCAAA
194 ATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACAAAACTGACTGACAAGCCAAA
31896420 CCACCTTGCTAAA
259 CCACCTTGCT-AA
* *
31896433 ATTGATTGATTGATAAATTAAGATAACATTTTTACAAGCATTCAAATTGGGACAAAATGGACTGT
1 ATTGA---A-TGATAAATTAAGAGAACATTTCTACAAGCATTCAAATTGGGA-AAAATGGACTGT
* * * *
31896498 AATGCCAAACAACCTAGTCTAA-TTGCCCTGCCAATATTTGCTTGAGTGTAAAATTAAAAAAGGA
61 CATGCCAAACAACCTAGCCAAACTT-CCCTGCCAATATTTGCTTGAGTGCAAAATT--AAAAGGA
* * * * *
31896562 CATTTT-TATTAGCATTTAAATTGGAATGAAATGGACTATCATGCCAAACTACTCTGGCAAAATT
123 C-TTTTCCATTAACATTTAAATTGGAACGAAATAGACTATCATGCCAAACTACTCTGCCAAAATT
* * * *
31896626 TGATTTAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATTGTCTGTCA
187 TGATTTAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACAAAACTGACTGACA
**
31896691 AGCCAAACTGCCTTGCTAA
252 AGCCAAACCACCTTGCTAA
* * *
31896710 ATTGAATGATAAATTAAGAGGACATTTCTACAAGCATTCAAATTGGGATGAAATGGGCTGTCATG
1 ATTGAATGATAAATTAAGAGAACATTTCTACAAGCATTCAAATTGGGA-AAAATGGACTGTCATG
* * ** *
31896775 CCAAACTACCAAGCCAAACAGCCCTGCCAAAATTT
65 CCAAACAACCTAGCCAAACTTCCCTGCCAATATTT
31896810 TGTTCAATAC
Statistics
Matches: 324, Mismatches: 42, Indels: 21
0.84 0.11 0.05
Matches are distributed among these distances:
272 5 0.02
273 79 0.24
274 1 0.00
275 3 0.01
276 89 0.27
277 9 0.03
278 134 0.41
279 4 0.01
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (270 bp):
ATTGAATGATAAATTAAGAGAACATTTCTACAAGCATTCAAATTGGGAAAAATGGACTGTCATGC
CAAACAACCTAGCCAAACTTCCCTGCCAATATTTGCTTGAGTGCAAAATTAAAAGGACTTTTCCA
TTAACATTTAAATTGGAACGAAATAGACTATCATGCCAAACTACTCTGCCAAAATTTGATTTAAT
GCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACAAAACTGACTGACAAGCCAAACC
ACCTTGCTAA
Found at i:31896696 original size:88 final size:82
Alignment explanation
Indices: 31896558--31896784 Score: 249
Period size: 82 Copynumber: 2.7 Consensus size: 82
31896548 AAATTAAAAA
* * * * *
31896558 AGGACATTTTTATTAGCATTTAAATTGGAATGAAATGGACTATCATGCCAAACTACTCTGGCAAA
1 AGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGACTGTCATGCCAAACTAC-CTGGCAAA
31896623 ATTTGATTTAATGCA-AAATTAAG
65 A-TTG----AATG-ATAAATTAAG
** * * * * * *
31896646 AGGACATTTCTATAAGCATTCAAATTGGGACAAAATTGTCTGTCAAGCCAAACTGCCTTGCTAAA
1 AGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGACTGTCATGCCAAACTACCTGGCAAAA
31896711 TTGAATGATAAATTAAG
66 TTGAATGATAAATTAAG
* *
31896728 AGGACATTTCTACAAGCATTCAAATTGGGATGAAATGGGCTGTCATGCCAAACTACC
1 AGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGACTGTCATGCCAAACTACC
31896785 AAGCCAAACA
Statistics
Matches: 118, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
81 1 0.01
82 62 0.53
86 3 0.03
87 7 0.06
88 45 0.38
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.30
Consensus pattern (82 bp):
AGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGACTGTCATGCCAAACTACCTGGCAAAA
TTGAATGATAAATTAAG
Found at i:31897025 original size:188 final size:183
Alignment explanation
Indices: 31896619--31897070 Score: 476
Period size: 188 Copynumber: 2.4 Consensus size: 183
31896609 ACTACTCTGG
* * * *
31896619 CAAAATTTGATTTAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATTG
1 CAAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACAAAATGG
* * *** * * * * *
31896684 TCTGTCAAGCCAAACTGCCTTGCTAAATTGAATGATAAATTAAGAGGACATTTCTACAAGCATTC
66 ACTGTCAAGCCAAACTACCCAACCAAATTGAAAGAAAAAATAAGAGGACATTTATACAAGCATTC
* ** ** * *
31896749 AAATTGGGATGAAATGGGCTGTCATGCCAAACTACCAAGCCAAACAGCCCTGC
131 AAATTGCGACAAAATGGAATGTCATGCAAAACTACCAAACCAAACAGCCCTGC
* * * *
31896802 CAAAATTTTG-TTCAATACG-AATTTAAGAGGACATTTTTATAAGCATTCAAATTAGGACAAAAT
1 CAAAA-TTTGATTAAAT-GGAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACAAAAT
*** * *
31896865 GGACTGTCTTTCCAAATTACCCAACCAAACTTGATAGAAAGAAAAAATAAGAGGACATTTATATA
64 GGACTGTCAAGCCAAACTACCCAACCAAA--T--T-GAAAGAAAAAATAAGAGGACATTTATACA
* *
31896930 AGCATTCAAATTGCGACAAAATGGAATGTCATGCAAAACTGCCAAACCAAACTGCCCTGC
124 AGCATTCAAATTGCGACAAAATGGAATGTCATGCAAAACTACCAAACCAAACAGCCCTGC
* * * *
31896990 CGAAATTTGATTAAATGGAAAATTAAGATGACATTTCTATAAGCATTCAATTTAGGACTAAATGG
1 CAAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACAAAATGG
* * *
31897055 ATTGTCATGTCAAACT
66 ACTGTCAAGCCAAACT
31897071 GCCCTGCCAA
Statistics
Matches: 216, Mismatches: 44, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
183 69 0.32
184 4 0.02
185 1 0.00
187 6 0.03
188 136 0.63
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (183 bp):
CAAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACAAAATGG
ACTGTCAAGCCAAACTACCCAACCAAATTGAAAGAAAAAATAAGAGGACATTTATACAAGCATTC
AAATTGCGACAAAATGGAATGTCATGCAAAACTACCAAACCAAACAGCCCTGC
Found at i:31897101 original size:188 final size:187
Alignment explanation
Indices: 31896638--31897131 Score: 466
Period size: 188 Copynumber: 2.6 Consensus size: 187
31896628 ATTTAATGCA
* * * * *
31896638 AAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATTGTCTGTCAAG-CCAAACTGC
1 AAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACAAAATGGACTGTC-TGTCCAAACTAC
*** * * * * **
31896702 CTTGCTAAA--T--T-GAATGATAAATTAAGAGGACATTTCTACAAGCATTCAAATTGGGATGAA
65 CCAACCAAACTTGATAGAATGA-AAAATAAGAGGACATTTCTATAAGCATTCAAATTGCGACAAA
** * * *
31896762 ATGGGCTGTCATGCCAAACTACCAAGCCAAACAGCCCTGCCAAAATTTTGTTCAATACG
129 ATGGAATGTCATGCAAAACTACCAAACCAAACAGCCCTGCCAAAATTTTGTTAAATACG
* * * *
31896821 AATTTAAGAGGACATTTTTATAAGCATTCAAATTAGGACAAAATGGACTGTCTTTCCAAATTACC
1 AAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACAAAATGGACTGTCTGTCCAAACTACC
* *
31896886 CAACCAAACTTGATAGAAAGAAAAAATAAGAGGACATTTATATAAGCATTCAAATTGCGACAAAA
66 CAACCAAACTTGATAGAATG-AAAAATAAGAGGACATTTCTATAAGCATTCAAATTGCGACAAAA
* * * *
31896951 TGGAATGTCATGCAAAACTGCCAAACCAAACTGCCCTGCCGAAA-TTTGATTAAAT-GG
130 TGGAATGTCATGCAAAACTACCAAACCAAACAGCCCTGCCAAAATTTTG-TTAAATACG
* * * * *
31897008 AAAATTAAGATGACATTTCTATAAGCATTCAATTTAGGACTAAATGGATTGTCATGT-CAAACTG
1 -AAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACAAAATGGACTGTC-TGTCCAAACTA
** * * * * * * *
31897072 CCCTGCCAATATTTGCTTGGATGAAAAATAAAGAGAACATTTCTATTAGCATTAAAATTG
64 CCCAACCAA-ACTTGATAGAATGAAAAAT-AAGAGGACATTTCTATAAGCATTCAAATTG
31897132 GAACGAAATA
Statistics
Matches: 250, Mismatches: 49, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
183 59 0.24
185 1 0.00
187 6 0.02
188 147 0.59
189 37 0.15
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.27
Consensus pattern (187 bp):
AAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACAAAATGGACTGTCTGTCCAAACTACC
CAACCAAACTTGATAGAATGAAAAATAAGAGGACATTTCTATAAGCATTCAAATTGCGACAAAAT
GGAATGTCATGCAAAACTACCAAACCAAACAGCCCTGCCAAAATTTTGTTAAATACG
Found at i:31897247 original size:88 final size:86
Alignment explanation
Indices: 31896977--31897249 Score: 282
Period size: 88 Copynumber: 3.1 Consensus size: 86
31896967 ACTGCCAAAC
* * * * *
31896977 CAAACTGCCCTGCCGAA-ATTTGATTAAATGGAAAATTAAGATGACATTTCTATAAGCATTCAAT
1 CAAACTACCCTGCC-AATATTTGATTGAAT-GAAAATTAAGAGGACATTTCTATAAGCATTAAAA
* *
31897041 TTAGGACTAAATGGATTGTCATG
64 TTGGGACGAAATGGATTGTCATG
* * * * * *
31897064 TCAAACTGCCCTGCCAATATTTGCTTGGATGAAAAATAAAGAGAACATTTCTATTAGCATTAAAA
1 -CAAACTACCCTGCCAATATTTGATTGAATG-AAAATTAAGAGGACATTTCTATAAGCATTAAAA
* *
31897129 TTGGAACGAAATAGACTT-TCATG
64 TTGGGACGAAATGGA-TTGTCATG
* *
31897152 CCAAACTACTCC-GCCAATATTTGATTGAATGAAAAGTTAAGAGGACATTTCTGTAAGCATTTAA
1 -CAAACTAC-CCTGCCAATATTTGATTGAATGAAAA-TTAAGAGGACATTTCTATAAGCATTAAA
*
31897216 ATTGGGACGAAATGGATTGTAATG
63 ATTGGGACGAAATGGATTGTCATG
31897240 CAAAACTACC
1 C-AAACTACC
31897250 TAGCCAAACC
Statistics
Matches: 153, Mismatches: 25, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
87 11 0.07
88 138 0.90
89 4 0.03
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (86 bp):
CAAACTACCCTGCCAATATTTGATTGAATGAAAATTAAGAGGACATTTCTATAAGCATTAAAATT
GGGACGAAATGGATTGTCATG
Found at i:31897631 original size:100 final size:97
Alignment explanation
Indices: 31897347--31899508 Score: 765
Period size: 100 Copynumber: 22.4 Consensus size: 97
31897337 CAGGCCAAAG
* * * * *
31897347 TGCCCTGCTAAAATTCATTTAAAGCAAAATTAATAGGACATTTTTATAAGCATTCAAATTGGGAC
1 TGCCCTGCCAAAATTGATTGAATGCAAAA-TAAGAGGACATTTTTATAAGCATTCAAATTGGGAC
* * *
31897412 TAAATGGATTGTCATGCAAAACTACCCAGCCTAAT
65 AAAATGGACTGTCATGCAAAACTA-TCAGCC-AAT
* * *** * * *
31897447 TTCCCTGCCACAATTTGATTGAATGCACTTTAAGAGGACATTTTTATCAGCATTCAGATTGAGAC
1 TGCCCTGCCA-AAATTGATTGAATGCAAAATAAGAGGACATTTTTATAAGCATTCAAATTGGGAC
* * * * * * *
31897512 GAAATAGACTATAAAGCAAAATTATGCAGCCAACC
65 AAAATGGACTGTCATGCAAAACTAT-CAGCCAA-T
* * * *
31897547 TGCCCTGCCAAAATTGATTGAATGCAAAGATAGGAGAATATTTCTATAAGCATTCAAATTGGGAC
1 TGCCCTGCCAAAATTGATTGAATGCAAA-ATAAGAGGACATTTTTATAAGCATTCAAATTGGGAC
* *
31897612 AAAATGGGCTGTCATGCAAAACTACTCAACCAAAT
65 AAAATGGACTGTCATGCAAAACTA-TCAGCC-AAT
* * *
31897647 TGCCTTGTCAAAATTTGATTGTATGCAAAATTAAGAGGACATTTTTATAAGCATTC-AATTCGGG
1 TGCCCTGCCAAAA-TTGATTGAATGCAAAA-TAAGAGGACATTTTTATAAGCATTCAAATT-GGG
* * * *
31897711 A-AGAAATGGTCTGTCATGTC-AAACTACCCTGCCAAAC
63 ACA-AAATGGACTGTCATG-CAAAACTA-TCAGCC-AAT
* * * * * *
31897748 TGCCCTGCCAATATTTGCTTGAGTGTAAAATTAAGAGAACATTTCTATTAATG-ATT-AAATTGG
1 TGCCCTGCCAA-AATTGATTGAATGCAAAA-TAAGAGGACATTTTTA-TAA-GCATTCAAATTGG
* * * * *
31897811 AACGAAATGGAATGTCAAGCCAAAC--T-A--C---
62 GACAAAATGGACTGTCATGCAAAACTATCAGCCAAT
* * * * *
31897839 T---CTGTCAAAATTTGATTTAATGCAAAATTAAAAAGACATTTCTATAAGCATTCAAATTGGGA
1 TGCCCTGCCAAAA-TTGATTGAATGCAAAA-TAAGAGGACATTTTTATAAGCATTCAAATTGGGA
* ** * *
31897901 CAACATTTACTGT-A-GC---GCCA--AGCC---
64 CAAAATGGACTGTCATGCAAAACTATCAGCCAAT
* * * * * * **
31897925 -GCCCTACTAAAATTAATTGATTG-ATAAATTAAAATGACATTTCAATAAGCATTCAAAATTGGG
1 TGCCCTGCCAAAATTGATTGAATGCA-AAA-TAAGAGGACATTTTTATAAGCATTC-AAATTGGG
* * * *
31897988 ACGAAATGGACTGTCATGCCAAACTACCAAGCCAAGC
63 ACAAAATGGACTGTCATGCAAAACTATC-AGCCAA-T
* * * * * * *
31898025 TGCCCTACTAATATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGTATTCAAATTGGAA
1 TGCCCTGCCAA-AATTGATTGAATGCAAA-ATAAGAGGACATTTTTATAAGCATTCAAATTGGGA
** * * * *
31898090 TGAAATGGGCTGTCATGCCAAACTACCCAGCCAAAC
64 CAAAATGGACTGTCATGCAAAACTA-TCAGCC-AAT
* * ** * * * * * *
31898126 TGCCCTGCCAAAATTTGATTGAACGTAAAATTAAGAGGATGTTTCTATGAGTAATCAATTTGGAA
1 TGCCCTGCCAAAA-TTGATTGAATGCAAAA-TAAGAGGACATTTTTATAAGCATTCAAATTGGGA
* * ** * *
31898191 CGAAATGGATTGTCATGTTAAACT-TCCCTAGCAAAC
64 CAAAATGGACTGTCATGCAAAACTAT--C-AGCCAAT
* * * * * * * *
31898227 TGCCCTGCCAATATT-TTCCTCAATGTAAAATTAAGAGCACATTTCTATTAGGATTCAAATTGGG
1 TGCCCTGCCAAAATTGAT--TGAATGCAAAA-TAAGAGGACATTTTTATAAGCATTCAAATTGGG
* * *
31898291 ACAAAATGCACTATCATGC-CAAC--T-A--C---
63 ACAAAATGGACTGTCATGCAAAACTATCAGCCAAT
* * * *
31898317 T---CTGCCAAAATTTGATTTAATGCAAAATTAAGAGAACAATTCTATAAGCATTCAAATTGGGA
1 TGCCCTGCCAAAA-TTGATTGAATGCAAAA-TAAGAGGACATTTTTATAAGCATTCAAATTGGGA
** * * * * * * *
31898379 CAAAATTAATTGTTAAGCTAAACTACCCAACCAAAC
64 CAAAATGGACTGTCATGCAAAACTA-TCAGCC-AAT
* * * * * **
31898415 TGCCCTGCCAAAATTGATTGAAAGTAAAAATAAGAGGAAATTTATATCAGCATTCAAATTGCAAC
1 TGCCCTGCCAAAATTGATTGAATG-CAAAATAAGAGGACATTTTTATAAGCATTCAAATTGGGAC
* * * * *
31898480 AAAATGAACTGTCACGCAAAACTACCCAACCAAAC
65 AAAATGGACTGTCATGCAAAACTA-TCAGCC-AAT
* ** * * * * *
31898515 TGCCCCTACCAATGTTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTTAATTTGGG
1 TG-CCCTGCCAA-AATTGATTGAATGCAAAA-TAAGAGGACATTTTTATAAGCATTCAAATTGGG
* *
31898580 ACGAAATGGA-T-TC-T-C---A-TATCA---AAC
63 ACAAAATGGACTGTCATGCAAAACTATCAGCCAAT
* * * * * * * ** *
31898604 TACCCTGTCAATATTTACTTGAATGCACAATAAAGAGAACATTTCTATTTGCATTCAAATTGGAA
1 TGCCCTGCCAAAATTGA-TTGAATGCAAAAT-AAGAGGACATTTTTATAAGCATTCAAATTGGGA
* * * *
31898669 CGAAATAGATTGTCATGCCAAACTAT-------T
64 CAAAATGGACTGTCATGCAAAACTATCAGCCAAT
* * *
31898696 T---C-ACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTTTGTAAGCATTCAAATTGGGA
1 TGCCCTGCCAAAA-TTGATTGAATGCAAAA-TAAGAGGACATTTTTATAAGCATTCAAATTGGGA
* *
31898757 -AAAATGGACTGTAATG-----C---CA---AAC
64 CAAAATGGACTGTCATGCAAAACTATCAGCCAAT
* * *
31898779 TGCCCTGCCAAAATTAGATTGAATGCAATATTAAGAAGACATTTCTATAAGCATTCAAATTGGGA
1 TGCCCTGCCAAAATT-GATTGAATGCAA-AATAAGAGGACATTTTTATAAGCATTCAAATTGGGA
*** * * *
31898844 GGGAATTGAC--T-AT-C-AGA--A-CA---AAC
64 CAAAATGGACTGTCATGCAAAACTATCAGCCAAT
* * * * * *
31898867 TGCCCTGCTAAAATTCATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAATTAGGAT
1 TGCCCTGCCAAAATTGATTGAATGCAAAA-TAAGAGGACATTTTTATAAGCATTCAAATTGGGAC
* * *
31898932 GAAATGGACTGTCATTCGAAACTATCAAGCCAAAT
65 AAAATGGACTGTCATGCAAAACTATC-AGCC-AAT
** * *
31898967 TGCCCTGCCAAAATTTGATTGAATG-AACTTTAAGAGGATA-TTTTATAAGCATTCAAATTAGGA
1 TGCCCTGCCAAAA-TTGATTGAATGCAA-AATAAGAGGACATTTTTATAAGCATTCAAATTGGGA
* * * * *
31899030 CAAAATGGACTGTCATGCCAAACGACCCAACCAAAC
64 CAAAATGGACTGTCATGCAAAACTA-TCAGCC-AAT
* * * * *
31899066 TACCCTGCCAAACTTGATTGAATGCAAAAATAAGAGGTCATTTCTATAAGCATTTAAATTGGGAC
1 TGCCCTGCCAAAATTGATTGAATGC-AAAATAAGAGGACATTTTTATAAGCATTCAAATTGGGAC
* *
31899131 AAAATGGA-TGGTCATGCCAAACTACCCAGCCAAAT
65 AAAATGGACT-GTCATGCAAAACTA-TCAGCC-AAT
* * * * * ** *
31899166 TGCCATTCTAAAATTGATTGAATG-ATAAATTAAGAGGACATCTCTATAAGCATTCAAATTTTGT
1 TGCCCTGCCAAAATTGATTGAATGCA-AAA-TAAGAGGACATTTTTATAAGCATTCAAATTGGGA
* * * * *
31899230 CGAAATGGATTGTCATGCAACACTACCCAACCAAAT
64 CAAAATGGACTGTCATGCAAAACTA-TCAGCC-AAT
* * * * * * ** *
31899266 TGACCAGCTAAAATCGATTGAATGCAAAATTCAGAGGACATTTCTATAATAATTCAAATTTGGAC
1 TGCCCTGCCAAAATTGATTGAATGCAAAA-TAAGAGGACATTTTTATAAGCATTCAAATTGGGAC
* *
31899331 AAAATGGACTGTCATGCCAAACTACCAAGCCAAACT
65 AAAATGGACTGTCATGCAAAACTATC-AGCC-AA-T
* * * * * * **
31899367 AT-CCC--ACAAATATTGATTAAACGCAAAATTAATAAGACATTTGTATAAG-AGTTTTAATTGG
1 -TGCCCTGCCAAA-ATTGATTGAATGCAAAA-TAAGAGGACATTTTTATAAGCA-TTCAAATTGG
* * * * *
31899428 GACGAAATAGACTGTCATGCCAAATTATCCAGCAAAAT
62 GACAAAATGGACTGTCATGCAAAACTAT-CAGC-CAAT
* * *
31899466 TGCCTTG-GAAGAATTTGATTGAATG-AAAATTAAGAAGACATTT
1 TGCCCTGCCAA-AA-TTGATTGAATGCAAAA-TAAGAGGACATTT
31899509 GATAAACCAT
Statistics
Matches: 1586, Mismatches: 337, Indels: 278
0.72 0.15 0.13
Matches are distributed among these distances:
82 1 0.00
83 2 0.00
84 1 0.00
85 2 0.00
86 10 0.01
87 215 0.14
88 195 0.12
89 13 0.01
90 7 0.00
91 3 0.00
92 5 0.00
93 4 0.00
94 4 0.00
95 5 0.00
96 8 0.01
98 15 0.01
99 99 0.06
100 534 0.34
101 367 0.23
102 94 0.06
103 2 0.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.28
Consensus pattern (97 bp):
TGCCCTGCCAAAATTGATTGAATGCAAAATAAGAGGACATTTTTATAAGCATTCAAATTGGGACA
AAATGGACTGTCATGCAAAACTATCAGCCAAT
Found at i:31897698 original size:101 final size:101
Alignment explanation
Indices: 31897340--31898325 Score: 585
Period size: 101 Copynumber: 10.1 Consensus size: 101
31897330 TGACTGTCAG
* * * * * *
31897340 GCCAAAGTGCCCTGCTAAAA-TTCATTTAAAGCAAAATTAATAGGACATTTTTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
* * *
31897404 ATTGGGACTAAATGGATTGTCATGCAAAACTACCCA
66 ATTGGGACAAAATGGACTGTCATGCAAAACTACTCA
* * * * ** * *
31897440 GCCTAATTTCCCTGCCACAATTTGATTGAATGC-ACTTTAAGAGGACATTTTTATCAGCATTCAG
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
* * * * * * *
31897504 ATTGAGACGAAATAGACTATAAAGCAAAATTA-TGCA
66 ATTGGGACAAAATGGACTGTCATGCAAAACTACT-CA
* * * * *
31897540 GCCAACCTGCCCTGCCAAAA-TTGATTGAATGCAAAGA-TAGGAGAATATTTCTATAAGCATTCA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAA-ATTAAGAGGACATTTTTATAAGCATTCA
*
31897603 AATTGGGACAAAATGGGCTGTCATGCAAAACTACTCA
65 AATTGGGACAAAATGGACTGTCATGCAAAACTACTCA
* * * * *
31897640 ACCAAATTGCCTTGTCAAAATTTGATTGTATGCAAAATTAAGAGGACATTTTTATAAGCATTC-A
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
* * *
31897704 ATTCGGGA-AGAAATGGTCTGTCATGTC-AAACTACCCT
66 ATT-GGGACA-AAATGGACTGTCATG-CAAAACTACTCA
* * * * * *
31897741 GCCAAACTGCCCTGCCAATATTTGCTTGAGTGTAAAATTAAGAGAACATTTCTATTAATG-ATT-
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTA-TAA-GCATTC
* * * * *
31897804 AAATTGGAACGAAATGGAATGTCAAGCCAAACTACT--
64 AAATTGGGACAAAATGGACTGTCATGCAAAACTACTCA
* * * *
31897840 ------CTG---T--CAAAATTTGATTTAATGCAAAATTAAAAAGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
* **
31897894 ATTGGGACAACATTTACTGT-A-G----------C-
66 ATTGGGACAAAATGGACTGTCATGCAAAACTACTCA
* * * * * * ** * * **
31897917 GCCAAGCCGCCCTACTAAAA-TTAATTGATTGATAAATTAAAATGACATTTCAATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTC-A
* *
31897981 AATTGGGACGAAATGGACTGTCATGCCAAACTAC-CAA
65 AATTGGGACAAAATGGACTGTCATGCAAAACTACTC-A
* * * * * * *
31898018 GCCAAGCTGCCCTACTAATATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGTATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
* ** * * *
31898083 ATTGGAATGAAATGGGCTGTCATGCCAAACTACCCA
66 ATTGGGACAAAATGGACTGTCATGCAAAACTACTCA
* * ** * * * *
31898119 GCCAAACTGCCCTGCCAAAATTTGATTGAACGTAAAATTAAGAGGATGTTTCTATGAGTAATCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
* * * * ** * *
31898184 TTTGGAACGAAATGGATTGTCATGTTAAACTTCCCTA
66 ATTGGGACAAAATGGACTGTCATGCAAAACTACTC-A
* *** * * * * * *
31898221 G-CAAACTGCCCTGCCAATATTTTCCTCAATGTAAAATTAAGAGCACATTTCTATTAGGATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
* * * *
31898285 ATTGGGACAAAATGCACTATCATGC-CAACTACTCT
66 ATTGGGACAAAATGGACTGTCATGCAAAACTACTCA
31898320 GCCAAA
1 GCCAAA
31898326 ATTTGATTTA
Statistics
Matches: 680, Mismatches: 159, Indels: 94
0.73 0.17 0.10
Matches are distributed among these distances:
83 2 0.00
86 3 0.00
87 42 0.06
88 69 0.10
89 1 0.00
90 2 0.00
93 3 0.00
99 14 0.02
100 162 0.24
101 336 0.49
102 45 0.07
103 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (101 bp):
GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
ATTGGGACAAAATGGACTGTCATGCAAAACTACTCA
Found at i:31898581 original size:289 final size:290
Alignment explanation
Indices: 31898109--31898666 Score: 654
Period size: 289 Copynumber: 1.9 Consensus size: 290
31898099 CTGTCATGCC
* * * ** *
31898109 AAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAACGTAAAATTAAGAGGATGTTTCTAT
1 AAACTACCCAACCAAACTGCCCTGCCAAAATTTGATTGAAAGTAAAAATAAGAGGAAATTTATAT
* * * * * * * * ** * * * *
31898174 GAGTAATCAATTTGGAACGAAATGGATTGTCATGTTAAACTTCCCTAGCAAACTGCCCTGCCAAT
66 CAGCAATCAAATTGCAACAAAATGAACTGTCACGCAAAACTACCCAACCAAACTGCCCTACCAAT
** * * * *
31898239 ATTTTCCTCAATGTAAAATTAAGAGCACATTTCTATTAGGATTCAAATTGGGACAAAATGCACTA
131 ATTTGACTAAATGGAAAATTAAGAGCACATTTCTATAAGCATTCAAATTGGGACAAAATGCACTA
* * * *
31898304 TCAT-GCCAACTACTCTGCCAAAATTTGA-TTTAATGCAAAATTAAGAGAACAATTCTATAAGCA
196 TCATAGCAAACTACCCTGCCAAAATTT-ACTTGAATGCAAAATAAAGAGAACAATTCTATAAGCA
31898367 TTCAAATTGGGACAAAATTAATTGTTAAGCT
260 TTCAAATTGGGACAAAATTAATTGTTAAGCT
31898398 AAACTACCCAACCAAACTGCCCTGCCAAAA-TTGATTGAAAGTAAAAATAAGAGGAAATTTATAT
1 AAACTACCCAACCAAACTGCCCTGCCAAAATTTGATTGAAAGTAAAAATAAGAGGAAATTTATAT
*
31898462 CAGCATTCAAATTGCAACAAAATGAACTGTCACGCAAAACTACCCAACCAAACTGCCCCTACCAA
66 CAGCAATCAAATTGCAACAAAATGAACTGTCACGCAAAACTACCCAACCAAACTG-CCCTACCAA
* * * * * * * *
31898527 TGTTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTTAATTTGGGACGAAATGGATT
130 TATTTGACTAAATGGAAAATTAAGAGCACATTTCTATAAGCATTCAAATTGGGACAAAATGCACT
* * * * * * **
31898592 CTCATATCAAACTACCCTGTCAATATTTACTTGAATGCACAATAAAGAGAACATTTCTATTTGCA
195 ATCATAGCAAACTACCCTGCCAAAATTTACTTGAATGCAAAATAAAGAGAACAATTCTATAAGCA
31898657 TTCAAATTGG
260 TTCAAATTGG
31898667 AACGAAATAG
Statistics
Matches: 219, Mismatches: 47, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
288 70 0.32
289 93 0.42
290 56 0.26
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (290 bp):
AAACTACCCAACCAAACTGCCCTGCCAAAATTTGATTGAAAGTAAAAATAAGAGGAAATTTATAT
CAGCAATCAAATTGCAACAAAATGAACTGTCACGCAAAACTACCCAACCAAACTGCCCTACCAAT
ATTTGACTAAATGGAAAATTAAGAGCACATTTCTATAAGCATTCAAATTGGGACAAAATGCACTA
TCATAGCAAACTACCCTGCCAAAATTTACTTGAATGCAAAATAAAGAGAACAATTCTATAAGCAT
TCAAATTGGGACAAAATTAATTGTTAAGCT
Found at i:31898812 original size:87 final size:87
Alignment explanation
Indices: 31898530--31898943 Score: 314
Period size: 88 Copynumber: 4.7 Consensus size: 87
31898520 CTACCAATGT
* * * * * * * * *
31898530 TTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTTAATTTGGGACGAAATGGATTCTC
1 TTGATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGAGGAAATGGACTGTA
* * * * *
31898595 ATATCAAACTACCCTGTCAATA
66 AGAACAAACTGCCCTGCCAAAA
* * * * * * ** * * * *
31898617 TTTACTTGAATGCACAATAAAGAGAACATTTCTATTTGCATTCAAATTGGAACGAAATAGATTGT
1 TTGA-TTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGAGGAAATGGACTGT
* * *** *
31898682 CATG-CCAAACT-ATTTCACCAAAA
65 -AAGAACAAACTGCCCT-GCCAAAA
* * *
31898705 TTTGATTGAATGAAAAATTAAGAGGACATTTTTGTAAGCATTCAAATTGGGA-AAAATGGACTGT
1 -TTGATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGAGGAAATGGACTGT
*
31898769 AATG-CCAAACTGCCCTGCCAAAA
65 AA-GAACAAACTGCCCTGCCAAAA
* * * * * * *
31898792 TTAGATTGAATGCAATATTAAGAAGACATTTCTATAAGCATTCAAATTGGGAGGGAATTGACTAT
1 TT-GATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGAGGAAATGGACTGT
* *
31898857 CAGAACAAACTGCCCTGCTAAAA
65 AAGAACAAACTGCCCTGCCAAAA
* * *
31898880 TTCATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAATTAGGATGAAATGGACTGT
1 TTGATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGAGGAAATGGACTGT
31898944 CATTCGAAAC
Statistics
Matches: 255, Mismatches: 63, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
86 3 0.01
87 124 0.49
88 125 0.49
89 3 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.30
Consensus pattern (87 bp):
TTGATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGAGGAAATGGACTGTA
AGAACAAACTGCCCTGCCAAAA
Found at i:31898835 original size:175 final size:176
Alignment explanation
Indices: 31898510--31898943 Score: 432
Period size: 175 Copynumber: 2.5 Consensus size: 176
31898500 ACTACCCAAC
** * * * * *
31898510 CAAACTGCCCCTACCAATGTTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTTAAT
1 CAAACTG-CCCTACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAA
* * * * * * *
31898575 TTGGGACGAAATGGATTCTCATATCAAACTACCCTGTCAATATTTACTTGAATGCACAATAAAGA
65 TTGGGACGAAATGGACTGTAATACCAAACTACCCTGCCAATAATTAATTGAATGCACAATAAAGA
** * * *
31898640 GAACATTTCTATTTGCATTCAAATTGGAACGAAATAGATTGTCATG-C
130 GAACATTTCTATAAGCATTCAAATTGGAACGAAATAGACTATCA-GAA
*** * *
31898687 CAAACT-ATTTCACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTTTGTAAGCATTCAAA
1 CAAACTGCCCT-ACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAA
* * * *
31898751 TTGGGA-AAAATGGACTGTAATGCCAAACTGCCCTGCCAA-AATTAGATTGAATGCA-ATATTAA
65 TTGGGACGAAATGGACTGTAATACCAAACTACCCTGCCAATAATTA-ATTGAATGCACA-ATAAA
* * * *
31898813 GA-AGACATTTCTATAAGCATTCAAATTGGGAGGGAATTGACTATCAGAA
128 GAGA-ACATTTCTATAAGCATTCAAATTGGAACGAAATAGACTATCAGAA
* * *
31898862 CAAACTGCCCTGCTAAAA-TTCATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAAT
1 CAAACTGCCCTACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAAT
* *
31898926 TAGGATGAAATGGACTGT
66 TGGGACGAAATGGACTGT
31898944 CATTCGAAAC
Statistics
Matches: 209, Mismatches: 41, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
174 54 0.26
175 97 0.46
176 52 0.25
177 6 0.03
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (176 bp):
CAAACTGCCCTACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAAT
TGGGACGAAATGGACTGTAATACCAAACTACCCTGCCAATAATTAATTGAATGCACAATAAAGAG
AACATTTCTATAAGCATTCAAATTGGAACGAAATAGACTATCAGAA
Found at i:31898954 original size:87 final size:86
Alignment explanation
Indices: 31898530--31898946 Score: 372
Period size: 87 Copynumber: 4.8 Consensus size: 86
31898520 CTACCAATGT
* * * * * *
31898530 TTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTTAATTTGGGACGAAATGGATTCTC
1 TTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTC
* * * *
31898595 ATATCAAACTACCCTGTCAATA
66 AT-GCAAACTGCCCTGCCAAAA
* * * * * ** * * *
31898617 TTTACTTGAATGCACAATAAAGAGAACATTTCTATTTGCATTCAAATTGGAACGAAATAGATTGT
1 TTGA-TTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGT
*** *
31898682 CATGCCAAACT-ATTTCACCAAAA
65 CATG-CAAACTGCCCT-GCCAAAA
* * *
31898705 TTTGATTGAATGAAAAATTAAGAGGACATTTTTGTAAGCATTCAAATTGGGA-AAAATGGACTGT
1 -TTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGT
*
31898769 AATGCCAAACTGCCCTGCCAAAA
65 CATG-CAAACTGCCCTGCCAAAA
* * * * * * *
31898792 TTAGATTGAATGCAATATTAAGAAGACATTTCTATAAGCATTCAAATTGGGAGGGAATTGACTAT
1 TT-GATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGT
*
31898857 CA-GAACAAACTGCCCTGCTAAAA
65 CATG--CAAACTGCCCTGCCAAAA
* * * *
31898880 TTCATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAATTAGGATGAAATGGACTGTC
1 TTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTC
31898945 AT
66 AT
31898947 TCGAAACTAT
Statistics
Matches: 261, Mismatches: 60, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
86 2 0.01
87 128 0.49
88 128 0.49
89 3 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.30
Consensus pattern (86 bp):
TTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTC
ATGCAAACTGCCCTGCCAAAA
Found at i:31900907 original size:100 final size:100
Alignment explanation
Indices: 31900733--31901297 Score: 659
Period size: 101 Copynumber: 5.6 Consensus size: 100
31900723 ATGACCATCA
* * * * * * * * *
31900733 ACATTTTTATAAACATTCAAATTGGCACGAAATAGAATGTAATGTCAAACAACCCAACCAAACTG
1 ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
* *
31900798 TCTTGCCAAAATTGATTGAATGCAAAATTAAGAGG
66 CCCTGCCAAAATTGATTGAATGCAAAATTAAGAGG
* * * * * *
31900833 ACATTTTTATAAGCATTCAAATTGTGACGAAATGGACTATTA-GACCAAATTACTCAGCCAAACT
1 ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG-CCAAACTACCCAGCCAAACT
* * * * *
31900897 GCCCTTCCAAAATTTTATTAAATACAAAATTAATAGG
65 GCCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGG
* * *
31900934 ACATTTCTATAAG-AGTTCAAATTGGGACAAAATGGACTGTCATGCCTAACTACCCAGCCAAATT
1 ACATTTCTATAAGCA-TTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACT
* ** * * *
31900998 GCTC-GGGAAGAATTTAATTGAATACAAAATTTAGAGG
65 GCCCTGCCAA-AA-TTGATTGAATGCAAAATTAAGAGG
* * ** *
31901035 AAATTTATATAAAAATTCAAATTGGGACGAAATGGATTGTCATGCCAAACTACCCAGCCAAACTG
1 ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
*
31901100 TCCTGCCAAAATTGATTGAATGCAAAATTAAGAGG
66 CCCTGCCAAAATTGATTGAATGCAAAATTAAGAGG
* * * * * *
31901135 ACATTTTTATAAGAATTCAAATTGGGACGAACTGAACTCTCATACCAAACTACCCAGCCAAACTG
1 ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
*
31901200 CCCTGCCAAAATTTTATTGAATGCAAAATTAAGAGG
66 CCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGG
31901236 ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAA
1 ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAA
31901298 ATTGATTGAA
Statistics
Matches: 391, Mismatches: 66, Indels: 15
0.83 0.14 0.03
Matches are distributed among these distances:
99 1 0.00
100 150 0.38
101 235 0.60
102 5 0.01
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (100 bp):
ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
CCCTGCCAAAATTGATTGAATGCAAAATTAAGAGG
Found at i:31901221 original size:201 final size:201
Alignment explanation
Indices: 31900733--31901697 Score: 1070
Period size: 201 Copynumber: 4.9 Consensus size: 201
31900723 ATGACCATCA
* * * * * * * *
31900733 ACATTTTTATAA-ACATTCAAATTGGCACGAAATAGAATGTAATGTCAAACAACCCAACCAAACT
1 ACATTTCTATAAGA-ATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACT
* * * *
31900797 GTCTTGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAATTGTGAC
65 GCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
* * * * * * * *
31900861 GAAATGGACTATTA-GACCAAATTACTCAGCCAAACTGCCCTTCCAAAATTTTATTAAATACAAA
130 GAAATGGACTGTCATG-CCAAACTACCCAGCCAAACTGCCCTGCCAAAA-TTGATTGAATGCAAA
*
31900925 ATTAATAGG
193 ATTAAGAGG
* * * *
31900934 ACATTTCTATAAGAGTTCAAATTGGGACAAAATGGACTGTCATGCCTAACTACCCAGCCAAATTG
1 ACATTTCTATAAGAATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
* ** * * * * * **
31900999 CTC-GGGAAGAATTTAATTGAATACAAAATTTAGAGGAAATTTATATAAAAATTCAAATTGGGAC
66 CCCTGCCAA-AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
* *
31901063 GAAATGGATTGTCATGCCAAACTACCCAGCCAAACTGTCCTGCCAAAATTGATTGAATGCAAAAT
130 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTGATTGAATGCAAAAT
31901128 TAAGAGG
195 TAAGAGG
* * * * *
31901135 ACATTTTTATAAGAATTCAAATTGGGACGAACTGAACTCTCATACCAAACTACCCAGCCAAACTG
1 ACATTTCTATAAGAATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
*
31901200 CCCTGCCAAAATTTTATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
66 CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
31901265 AAATGGACTGTCATGCCAAACTA--C--CC--A-------GCCAAAATTGATTGAATGCAAAATT
131 AAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTGATTGAATGCAAAATT
*
31901317 AAGAAG
196 AAGAGG
* *
31901323 ACATTTCTATAA-ACATTCAAATTGGGATGAATTGGA-TGGTCATGCCAAACTACCCAGCCAAAC
1 ACATTTCTATAAGA-ATTCAAATTGGGACGAAATGGACT-GTCATGCCAAACTACCCAGCCAAAC
* ** * * * *
31901386 TACCAAGCTAAAA-TTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGTGT
64 TGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGA
* * * * * * * **
31901450 CGAAATGAACTGTTATGCAAAACTACCCTGCCAAATTTCCCCGCCAAAATTGATTGAACCCAAAA
129 CGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTGATTGAATGCAAAA
*
31901515 TTAATAGG
194 TTAAGAGG
* * * * *
31901523 ACATTTCTATAAGCATTCAAAGTGGTACGAAATGGACTGTCATGCCAAACTACCCAGCCAAATTT
1 ACATTTCTATAAGAATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
* * * *
31901588 CCCTGCAAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCGATAAACATTCAAATTGGGAAG
66 CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
* *
31901653 AAACGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAA
131 AAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAA
31901698 TGTCATAACA
Statistics
Matches: 638, Mismatches: 103, Indels: 46
0.81 0.13 0.06
Matches are distributed among these distances:
187 71 0.11
188 92 0.14
189 1 0.00
191 2 0.00
193 1 0.00
195 1 0.00
197 2 0.00
199 1 0.00
200 93 0.15
201 286 0.45
202 87 0.14
203 1 0.00
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.26
Consensus pattern (201 bp):
ACATTTCTATAAGAATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
AAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTGATTGAATGCAAAATT
AAGAGG
Found at i:31901340 original size:87 final size:88
Alignment explanation
Indices: 31901191--31901384 Score: 302
Period size: 87 Copynumber: 2.2 Consensus size: 88
31901181 AAACTACCCA
* * * * *
31901191 GCCAAACTGCCCTGCCAAAATTTTATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
1 GCCAAACTACCCAGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAA
31901256 ATTGGGACGAAATGGACT-GTCAT
66 ATTGGGACGAAATGGA-TGGTCAT
31901279 GCCAAACTACCCAGCCAAAA-TTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAA
1 GCCAAACTACCCAGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAA
* *
31901343 ATTGGGATGAATTGGATGGTCAT
66 ATTGGGACGAAATGGATGGTCAT
31901366 GCCAAACTACCCAGCCAAA
1 GCCAAACTACCCAGCCAAA
31901385 CTACCAAGCT
Statistics
Matches: 98, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
86 1 0.01
87 79 0.81
88 18 0.18
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.25
Consensus pattern (88 bp):
GCCAAACTACCCAGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAA
ATTGGGACGAAATGGATGGTCAT
Found at i:31901404 original size:100 final size:100
Alignment explanation
Indices: 31901279--31901697 Score: 518
Period size: 100 Copynumber: 4.2 Consensus size: 100
31901269 GGACTGTCAT
*
31901279 GCCAAACTACCCAGCCAAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAA
1 GCCAAACTACCCAGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAA
*
31901344 TTGGGATGAATTGGA-TGGTCATGCCAAACTACCCA
66 TTGGGATGAAATGGACT-GTCATGCCAAACTACCCA
* * * *
31901379 GCCAAACTACCAAGCTAAAATTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAA
1 GCCAAACTACCCAGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAA
* * * * *
31901444 TTGTG-TCGAAATGAACTGTTATGCAAAACTACCCT
66 TTGGGAT-GAAATGGACTGTCATGCCAAACTACCCA
* * * ** * *
31901479 GCCAAATTTCCCCGCCAAAATTGATTGAACCCAAAATTAATAGGACATTTCTATAAGCATTCAAA
1 GCCAAACTACCCAGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAA
* * *
31901544 GTGGTACGAAATGGACTGTCATGCCAAACTACCCA
66 TTGGGATGAAATGGACTGTCATGCCAAACTACCCA
* * * * *
31901579 GCCAAATTTCCCTGCAAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCGATAAACATTCAA
1 GCCAAACTACCCAGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAA
* * *
31901644 ATTGGGAAGAAACGGACTGTCATGCCAAACTACCTA
65 ATTGGGATGAAATGGACTGTCATGCCAAACTACCCA
* *
31901680 GCCAAACTGCCCTGCCAA
1 GCCAAACTACCCAGCCAA
31901698 TGTCATAACA
Statistics
Matches: 272, Mismatches: 43, Indels: 7
0.84 0.13 0.02
Matches are distributed among these distances:
99 1 0.00
100 185 0.68
101 86 0.32
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.25
Consensus pattern (100 bp):
GCCAAACTACCCAGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAA
TTGGGATGAAATGGACTGTCATGCCAAACTACCCA
Found at i:31903762 original size:156 final size:157
Alignment explanation
Indices: 31903581--31903892 Score: 434
Period size: 156 Copynumber: 2.0 Consensus size: 157
31903571 AAATCAAAGC
31903581 TTTCTTTTAAGAAAAATCACTACTTTCCTTAAAGATCAAAAC-TTTATTTCGAAATAGTTGAAAA
1 TTTCTTTTAAGAAAAATCACTACTTTCCTTAAAGATCAAAACTTTTATTTCGAAATAGTTGAAAA
* * * *
31903645 AGATCAAAAC-TTTGTTTTAAAAATTTAAAATTTTCCTTTAAAATGA-TTAAAAAAACAGATTTT
66 AAATCAAAACATTT-TTTT-AAAATTTAAAACTTTCCTTTAAAATGACTAAAAAAAACAGAATTT
31903708 TATTCTTAAAAATCTAAACTTTCACTTTTT
129 TATT-TTAAAAATCTAAACTTTCACTTTTT
* * * *
31903738 TTTCTTTTAA-AAAAATCACTACTTTTCTTAAATATCAAAGCTTTTATTTTGAAATAGTTGAAAA
1 TTTCTTTTAAGAAAAATCACTACTTTCCTTAAAGATCAAAACTTTTATTTCGAAATAGTTGAAAA
** * **
31903802 AAATCAAAACATTTTTTTTTAATTTTAAACTTTCCTTTAAAATGACTAAAAAAAACTTAATTTTA
66 AAATCAAAACATTTTTTTAAAATTTAAAACTTTCCTTTAAAATGACTAAAAAAAACAGAATTTTA
* *
31903867 TTTTTAAAATCTAAACTTTCTCTTTT
131 TTTTAAAAATCTAAACTTTCACTTTT
31903893 AAAAAAATCC
Statistics
Matches: 137, Mismatches: 15, Indels: 7
0.86 0.09 0.04
Matches are distributed among these distances:
156 73 0.53
157 61 0.45
158 3 0.02
ACGTcount: A:0.40, C:0.12, G:0.04, T:0.43
Consensus pattern (157 bp):
TTTCTTTTAAGAAAAATCACTACTTTCCTTAAAGATCAAAACTTTTATTTCGAAATAGTTGAAAA
AAATCAAAACATTTTTTTAAAATTTAAAACTTTCCTTTAAAATGACTAAAAAAAACAGAATTTTA
TTTTAAAAATCTAAACTTTCACTTTTT
Found at i:31904584 original size:101 final size:101
Alignment explanation
Indices: 31904409--31904772 Score: 334
Period size: 101 Copynumber: 3.8 Consensus size: 101
31904399 GTGTCTACAA
* * **
31904409 CCAATATTTGATTGAATGCAAAATTAATAGGACATTTCTATAAGTATTCAAATTGGGAAGAAATG
1 CCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTGGGAAGAAATG
31904474 GACTATCATGCCAAACTACCCAGCCAAATTTCCCTG
66 GACTATCATGCCAAACTACCCAGCCAAATTTCCCTG
* * * *
31904510 CCAATGTTTGATTGAATGCAAAATTAAGAAGTCATTTCTATAAACATT-ATACTTGGGATGAAAT
1 CCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCA-AATTGGGAAGAAAT
*
31904574 GGACTGTCATGCCAAACT-----G--------CCCTG
65 GGACTATCATGCCAAACTACCCAGCCAAATTTCCCTG
* * * *
31904598 CCAA-AATTGATTGAACGCAAAATTAAGAGGACATTAT-TATAAGCATTCAAATTGGGACA-AAA
1 CCAATATTTGATTGAATGCAAAATTAAGAAGACATT-TCTATAAACATTCAAATTGGGA-AGAAA
* * * * *
31904660 TGGA-TGTCATGCAAAACTACCTAGCCAAACTACCCTG
64 TGGACTATCATGCCAAACTACCCAGCCAAATTTCCCTG
* ** * * * * *
31904697 CCAA-AATTGATTGAACACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTTGGACGAAATA
1 CCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTGGGAAGAAATG
31904761 GACTATCATGCC
66 GACTATCATGCC
31904773 TATAACACCC
Statistics
Matches: 219, Mismatches: 24, Indels: 41
0.77 0.08 0.14
Matches are distributed among these distances:
86 13 0.06
87 49 0.22
88 11 0.05
91 1 0.00
96 1 0.00
98 1 0.00
99 64 0.29
100 8 0.04
101 71 0.32
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (101 bp):
CCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTGGGAAGAAATG
GACTATCATGCCAAACTACCCAGCCAAATTTCCCTG
Found at i:31904653 original size:87 final size:86
Alignment explanation
Indices: 31904517--31904677 Score: 209
Period size: 87 Copynumber: 1.9 Consensus size: 86
31904507 CTGCCAATGT
* * * **
31904517 TTGATTGAATGCAAAATTAAGAAGTCATTTCTATAAACATTATACTTGGGATGAAATGGACTGTC
1 TTGATTGAACGCAAAATTAAGAAGACATTTCTATAAACATTATAATTGGGACAAAATGGA-TGTC
*
31904582 ATGCCAAACTGCCCTGCCAAAA
65 ATGCAAAACTGCCCTGCCAAAA
* *
31904604 TTGATTGAACGCAAAATTAAGAGGACATTAT-TATAAGCATTCA-AATTGGGACAAAATGGATGT
1 TTGATTGAACGCAAAATTAAGAAGACATT-TCTATAAACATT-ATAATTGGGACAAAATGGATGT
31904667 CATGCAAAACT
64 CATGCAAAACT
31904678 ACCTAGCCAA
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
86 13 0.20
87 49 0.77
88 2 0.03
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (86 bp):
TTGATTGAACGCAAAATTAAGAAGACATTTCTATAAACATTATAATTGGGACAAAATGGATGTCA
TGCAAAACTGCCCTGCCAAAA
Found at i:31905930 original size:32 final size:32
Alignment explanation
Indices: 31905889--31905953 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
31905879 TGAACCTCGG
31905889 TTTACTTGGGTAATTTACCGTCAATTCATCCT
1 TTTACTTGGGTAATTTACCGTCAATTCATCCT
31905921 TTTACTTGGGTAATTTACCGTCAATTCATCCT
1 TTTACTTGGGTAATTTACCGTCAATTCATCCT
31905953 T
1 T
31905954 ACATTCGTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.45
Consensus pattern (32 bp):
TTTACTTGGGTAATTTACCGTCAATTCATCCT
Found at i:31917659 original size:100 final size:100
Alignment explanation
Indices: 31917443--31918088 Score: 637
Period size: 100 Copynumber: 6.4 Consensus size: 100
31917433 GGTTGTCACA
* * * * *
31917443 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCTTACCA
1 ATAAGCATTAAAATTGGGACAAAATGGACTGTCATGCCAAACTACCCAACCAAACTGCC-TACCA
*
31917508 AAATTTGATTAAATGCAAAATTAAGATG-ACATTTAT
65 AAATTTGATTAAATGCAAAATTAAGA-GAACATTTTT
* * * * * *
31917544 ATAAG-AATACAAATTGGGGCGAAATGGATTGTCATGCCAAACTACCCAACCAAATTGCCCAGCC
1 ATAAGCATTA-AAATTGGGACAAAATGGACTGTCATGCCAAACTACCCAACCAAACTGCCTA-CC
31917608 AAAA-TTGATTAAATGCAAAATTAAGAGAACATTTTT
64 AAAATTTGATTAAATGCAAAATTAAGAGAACATTTTT
* * * * *
31917644 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCTTACCA
1 ATAAGCATTAAAATTGGGACAAAATGGACTGTCATGCCAAACTACCCAACCAAACTGCC-TACCA
* *
31917709 AAATTTGATTGAATGCAAAATTAAGAGGAA-ATTTAT
65 AAATTTGATTAAATGCAAAATTAAGA-GAACATTTTT
* * * * * * * * **
31917745 ATAGGCATTCAAATTGGGACGAAATGAACTGTCATGCTAAGCTACCCAGCAAAACTATTCTACCA
1 ATAAGCATTAAAATTGGGACAAAATGGACTGTCATGCCAAACTACCCAACCAAACT-GCCTACCA
**
31917810 AAATTT-ATTAAATGCAAAATTAAGAGTAA-ATTTCC
65 AAATTTGATTAAATGCAAAATTAAGAG-AACATTTTT
* * * * * *
31917845 ATAATCATTCAAATTGGGAGAAAATGGACTGTCGTGCCAAACTATCCAACCAAACTGTCTTACCA
1 ATAAGCATTAAAATTGGGACAAAATGGACTGTCATGCCAAACTACCCAACCAAACTG-CCTACCA
* ** *
31917910 AAATTTGATTGAATGCAAAATTTGGAGGACATTTCTT
65 AAATTTGATTAAATGCAAAATTAAGAGAACATTT-TT
* *** * * * *
31917947 -TAAGCATTTAAATTGGGATGGAATAGACTGTCATGCCAAACTACCCAACAAAATTGGCCT-GCA
1 ATAAGCATTAAAATTGGGACAAAATGGACTGTCATGCCAAACTACCCAACCAAACT-GCCTACCA
* *
31918010 AAAATTGATTGAATGCAAAATTAAGA-AGACATTTTT
65 AAATTTGATTAAATGCAAAATTAAGAGA-ACATTTTT
*
31918046 ATAAGCATTCAAATTAGGG-CAAAATGGACTGTCATGCCAAACT
1 ATAAGCATTAAAATT-GGGACAAAATGGACTGTCATGCCAAACT
31918089 GTCTTATCAA
Statistics
Matches: 450, Mismatches: 78, Indels: 35
0.80 0.14 0.06
Matches are distributed among these distances:
99 4 0.01
100 230 0.51
101 211 0.47
102 5 0.01
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.26
Consensus pattern (100 bp):
ATAAGCATTAAAATTGGGACAAAATGGACTGTCATGCCAAACTACCCAACCAAACTGCCTACCAA
AATTTGATTAAATGCAAAATTAAGAGAACATTTTT
Found at i:31917770 original size:101 final size:101
Alignment explanation
Indices: 31917443--31918249 Score: 794
Period size: 101 Copynumber: 8.1 Consensus size: 101
31917433 GGTTGTCACA
* * * * *
31917443 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCTTACCA
1 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCTTACCA
* * *
31917508 AAATTTGATTAAATGCAAAATTAAGATGACATTTAT
66 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * * * * * *
31917544 ATAAGAATACAAATTGGGGCGAAATGGATTGTCATGCCAAACTACCCAACCAAATTGCC-CAGCC
1 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCTTA-CC
* * *
31917608 AAAA-TTGATTAAATGCAAAATTAAGAGAACATTTTT
65 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * * *
31917644 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCTTACCA
1 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCTTACCA
* *
31917709 AAATTTGATTGAATGCAAAATTAAGAGGAAATTTAT
66 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * * * *
31917745 ATAGGCATTCAAATTGGGACGAAATGAACTGTCATGCTAAGCTACCCAGCAAAACTA-TTCTACC
1 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCT-TACC
* * * *
31917809 AAAATTT-ATTAAATGCAAAATTAAGAGTAAATTTCC
65 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * * **
31917845 ATAATCATTCAAATTGGGA-GAAAATGGACTGTCGTGCCAAACTATCCAACCAAACTGTCTTACC
1 ATAAGCATTCAAATTGGGACG-AAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCTTACC
**
31917909 AAAATTTGATTGAATGCAAAATTTGGAGGACATTTCT
65 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * * * * * * * *
31917946 TTAAGCATTTAAATTGGGATGGAATAGACTGTCATGCCAAACTACCCAACAAAATTGGCC-T-GC
1 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACT-ACCTTACC
* * *
31918009 AAAAATTGATTGAATGCAAAATTAAGAAGACATTTTT
65 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* *
31918046 ATAAGCATTCAAATTAGGG-CAAAATGGACTGTCATGCCAAACT-----G------T--CTTATC
1 ATAAGCATTCAAATT-GGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCTTACC
* *
31918097 AAAATTGGATTGAATGCAAAATTAAGAGGATATTTCT
65 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * *
31918134 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATCCCAAACTACCTAGTCAAACTACCCTT-CT
1 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTA-CCTTACC
* * *
31918198 AAAATTTGATTGAATTCAAGATTAAGAGTACATTTCT
65 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
31918235 ATAAGCATTCAAATT
1 ATAAGCATTCAAATT
31918250 TAATTGAATG
Statistics
Matches: 581, Mismatches: 98, Indels: 54
0.79 0.13 0.07
Matches are distributed among these distances:
86 1 0.00
87 4 0.01
88 70 0.12
89 1 0.00
93 1 0.00
99 2 0.00
100 233 0.40
101 263 0.45
102 6 0.01
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (101 bp):
ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCTTACCA
AAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
Found at i:31917792 original size:201 final size:201
Alignment explanation
Indices: 31917443--31918249 Score: 798
Period size: 201 Copynumber: 4.1 Consensus size: 201
31917433 GGTTGTCACA
* * * * * *
31917443 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCTTACCA
1 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCTTGCCA
* * * * * * *
31917508 AAATTTGATTAAATGCAAAATTAAGATGACATTTATATAAGAATACAAATTGGGGCGAAATGGAT
66 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
* * * * *
31917573 TGTCATGCCAAACTACCCAACCAAATTGCCCAGCCAAAATTGATTAAATGCAAAATTAAGAGAAC
131 TGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGAC
*
31917638 ATTTTT
196 ATTTCT
* * * * * *
31917644 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCTTACCA
1 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCTTGCCA
* * * *
31917709 AAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAGGCATTCAAATTGGGACGAAATGAAC
66 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
* * * *** * * * * *
31917774 TGTCATGCTAAGCTACCCAGCAAAACTATTCTACCAAAATTTATTAAATGCAAAATTAAGAGTAA
131 TGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGAC
*
31917839 ATTTCC
196 ATTTCT
* * * * ** *
31917845 ATAATCATTCAAATTGGGA-GAAAATGGACTGTCGTGCCAAACTATCCAACCAAACTGTCTTACC
1 ATAAGCATTCAAATTGGGACG-AAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCTTGCC
** * * * * *
31917909 AAAATTTGATTGAATGCAAAATTTGGAGGACATTTCTTTAAGCATTTAAATTGGGATGGAATAGA
65 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGA
* * * * * *
31917974 CTGTCATGCCAAACTACCCAACAAAATTGGCCTGCAAAAATTGATTGAATGCAAAATTAAGAAGA
130 CTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGA
*
31918039 CATTTTT
195 CATTTCT
* **
31918046 ATAAGCATTCAAATTAGGG-CAAAATGGACTGTCATGCCAAACT-----G------T--CTTATC
1 ATAAGCATTCAAATT-GGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCTTGCC
* *
31918097 AAAATTGGATTGAATGCAAAATTAAGAGGATATTTCTATAAGCATTCAAATTGGGACGAAATGGA
65 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGA
* * * * * * * * *
31918162 CTGTCATCCCAAACTACCTAGTCAAACTACCCTTCTAAAATTTGATTGAATTCAAGATTAAGAGT
130 CTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGG
31918227 ACATTTCT
194 ACATTTCT
31918235 ATAAGCATTCAAATT
1 ATAAGCATTCAAATT
31918250 TAATTGAATG
Statistics
Matches: 511, Mismatches: 91, Indels: 20
0.82 0.15 0.03
Matches are distributed among these distances:
188 91 0.18
189 42 0.08
190 1 0.00
201 374 0.73
202 3 0.01
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (201 bp):
ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCTTGCCA
AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
TGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGAC
ATTTCT
Found at i:31918114 original size:88 final size:87
Alignment explanation
Indices: 31918010--31918176 Score: 264
Period size: 88 Copynumber: 1.9 Consensus size: 87
31918000 TTGGCCTGCA
*
31918010 AAAATTGATTGAATGCAAAATTAAGAAGACATTTTTATAAGCATTCAAATTAGGG-CAAAATGGA
1 AAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATT-GGGACAAAATGGA
*
31918074 CTGTCATGCCAAACTGTCTTATC
65 CTGTCATCCCAAACTGTCTTATC
* * *
31918097 AAAATTGGATTGAATGCAAAATTAAGAGGATATTTCTATAAGCATTCAAATTGGGACGAAATGGA
1 AAAATT-GATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACAAAATGGA
31918162 CTGTCATCCCAAACT
65 CTGTCATCCCAAACT
31918177 ACCTAGTCAA
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
87 9 0.12
88 64 0.88
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (87 bp):
AAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACAAAATGGAC
TGTCATCCCAAACTGTCTTATC
Found at i:31918293 original size:45 final size:46
Alignment explanation
Indices: 31918199--31918295 Score: 142
Period size: 46 Copynumber: 2.1 Consensus size: 46
31918189 TACCCTTCTA
* * * * *
31918199 AAATTTGATTGAATTCAAGATTAAGAGTACATTTCTATAAGCATTC
1 AAATTTAATTGAATGCAAAATTAAGAGTAAATTTCTATAAGAATTC
31918245 AAATTTAATTGAATGCAAAATTAAGAG-AAATTTCTATAAGAATTC
1 AAATTTAATTGAATGCAAAATTAAGAGTAAATTTCTATAAGAATTC
31918290 AAATTT
1 AAATTT
31918296 GAAAAAAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
45 22 0.48
46 24 0.52
ACGTcount: A:0.44, C:0.08, G:0.11, T:0.36
Consensus pattern (46 bp):
AAATTTAATTGAATGCAAAATTAAGAGTAAATTTCTATAAGAATTC
Found at i:31918477 original size:101 final size:100
Alignment explanation
Indices: 31918245--31919043 Score: 678
Period size: 100 Copynumber: 7.9 Consensus size: 100
31918235 ATAAGCATTC
* * **
31918245 AAATTTAATTGAATGCAAAATTAAGAGAAATTTCTATAAGAATTCAAATTTGAAAAAAAAAATTG
1 AAATTTGATTGAATGCAAAATTAAGAGAAATTTCTATAAGAATT-AAAATTG--GGAAAAAA-TG
* * * * *
31918310 GACTGTCATGCAAAACTACCCTACCAAATTACCCTGCCA
62 GACTGTCATGCAAAACTACCCAACCAAACTGCCTTACCA
* * *
31918349 AAA-TTGATTGAATGCAAAATTAGGAGAATATTTTTATAAGAATTAAAATTGGGACAAAATGGA-
1 AAATTTGATTGAATGCAAAATTAAGAGAA-ATTTCTATAAGAATTAAAATTGGGAAAAAATGGAC
** *
31918412 TGGTCACACAAAACTACCCAACCAAACCGCCTTACCA
65 T-GTCATGCAAAACTACCCAACCAAACTGCCTTACCA
* * * **
31918449 AAATTTGATTGAATGAAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
1 AAATTTGATTGAATGCAAAATTAAGAG-AAATTTCTATAAGAATT-AAAATTG--GGAAAAAATG
* * * *
31918514 AACTGTCATGCCAAACTACCCAACCAAATTGCCTTGCCA
62 GACTGTCATGCAAAACTACCCAACCAAACTGCCTTACCA
* * *
31918553 AAA-TTGATTGAATGCAAAATTAAGAGAACATTTTTATAAGAATTAAAATTGGGACAAAATGGAT
1 AAATTTGATTGAATGCAAAATTAAGAGAA-ATTTCTATAAGAATTAAAATTGGGAAAAAATGGAC
** * *
31918617 TGTCACACAAAACTACCCAGCCAAACTACCTTACCA
65 TGTCATGCAAAACTACCCAACCAAACTGCCTTACCA
* ** * *
31918653 AAATTTGATTGAATGCAAAATTAAGAGTAAATTTCCATAATCATTCAAATTGGGAGAAAATGGAC
1 AAATTTGATTGAATGCAAAATTAAGAG-AAATTTCTATAAGAATTAAAATTGGGAAAAAATGGAC
* * * * * **
31918718 TATCGTGCCAAACTACCCAGCAAAACT-ATTCTACCA
65 TGTCATGCAAAACTACCCAACCAAACTGCCT-TACCA
* ** * *
31918754 AAATTT-ATTGAATGCAAAATTAAGAGTAAATTTCCATAATCATTCAAATTGGGAAAAAAAGGAC
1 AAATTTGATTGAATGCAAAATTAAGAG-AAATTTCTATAAGAATTAAAATTGGGAAAAAATGGAC
* * *
31918818 TGTCGTGCCAAACTATCCAACCAAACTGCCTTACCA
65 TGTCATGCAAAACTACCCAACCAAACTGCCTTACCA
* * * * * *** *
31918854 AAATTTCATTGAATGCAAAATTTGAAG-GACATTTCTTTAAGCATTTAAATTGGGATGGAATAGA
1 AAATTTGATTGAATGCAAAA-TT-AAGAGAAATTTCTATAAGAATTAAAATTGGGAAAAAATGGA
* * * * * *
31918918 CTATCATGCCAAACTACACAGCAAAATTGGCC-TACCA
64 CTGTCATGCAAAACTACCCAACCAAACT-GCCTTACCA
* * * * *** *
31918955 AAA-TTGATTGAATGCAAAATTAAGAGGACATGTCTATAAGCATTCAAATTGGGGCGAAATAGAC
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGAATTAAAATTGGGAAAAAATGGAC
* * * *
31919019 TGTCTTGCCAAACTGCCCAGCCAAA
65 TGTCATGCAAAACTACCCAACCAAA
31919044 ATTTGATTGA
Statistics
Matches: 578, Mismatches: 98, Indels: 42
0.81 0.14 0.06
Matches are distributed among these distances:
98 3 0.01
99 3 0.01
100 232 0.40
101 191 0.33
102 24 0.04
103 67 0.12
104 57 0.10
105 1 0.00
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.26
Consensus pattern (100 bp):
AAATTTGATTGAATGCAAAATTAAGAGAAATTTCTATAAGAATTAAAATTGGGAAAAAATGGACT
GTCATGCAAAACTACCCAACCAAACTGCCTTACCA
Found at i:31918844 original size:201 final size:198
Alignment explanation
Indices: 31918245--31924395 Score: 3079
Period size: 201 Copynumber: 31.4 Consensus size: 198
31918235 ATAAGCATTC
* * ** *
31918245 AAATTTAATTGAATGCAAAATTAAGAGAAATTTCTATAAGAATTCAAATTTGAAAAAAAAAATTG
1 AAATTTGATTGAATGCAAAATTAAGAGAAATTTCTATAAGCATTCAAA-TTG--GGAGAAAA-TG
* *
31918310 GACTGTCATGCAAAACTACCCTA-CCAAATTACCCTGCCAAAATTGATTGAATGCAAAATTAGGA
62 GACTGTCATGCCAAACTACCC-AGCCAAATT--CCTGCCAAAATTGATTGAATGCAAAATTAAGA
* * * **
31918374 -GAATATTTTTATAAGAATTAAAATTGGGACAAAATGGA-TGGTCACACAAAACTACCCAACCAA
124 GGAA-ATTTCTATAAGCATTCAAATTGGGACAAAATGGACT-GTCATGCAAAACTACCCAACCAA
**
31918437 ACCGCCTTACCA
187 ACTACCTTACCA
* ** *
31918449 AAATTTGATTGAATGAAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
1 AAATTTGATTGAATGCAAAATTAAGAG-AAATTTCTATAAGCATTCAAA-TTG--GGAGAAAATG
* *
31918514 AACTGTCATGCCAAACTACCCAACCAAATTGCCTTGCCAAAATTGATTGAATGCAAAATTAAGA-
62 GACTGTCATGCCAAACTACCCAGCCAAATT-CC-TGCCAAAATTGATTGAATGCAAAATTAAGAG
* * * * ** *
31918578 GAACATTTTTATAAGAATTAAAATTGGGACAAAATGGATTGTCACACAAAACTACCCAGCCAAAC
125 GAA-ATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAACCAAAC
31918643 TACCTTACCA
189 TACCTTACCA
* *
31918653 AAATTTGATTGAATGCAAAATTAAGAGTAAATTTCCATAATCATTCAAATTGGGAGAAAATGGAC
1 AAATTTGATTGAATGCAAAATTAAGAG-AAATTTCTATAAGCATTCAAATTGGGAGAAAATGGAC
* * * * * * *
31918718 TATCGTGCCAAACTACCCAGCAAAACTATTCTACCAAAATTTATTGAATGCAAAATTAAGAGTAA
65 TGTCATGCCAAACTACCCAGCCAAA-T-TCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGAA
* * * * * * * *
31918783 ATTTCCATAATCATTCAAATTGGGAAAAAAAGGACTGTCGTGCCAAACTATCCAACCAAACTGCC
128 ATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAACCAAACTACC
31918848 TTACCA
193 TTACCA
* * * * * *
31918854 AAATTTCATTGAATGCAAAATTTGAAG-GACATTTCTTTAAGCATTTAAATTGGGATG-GAATAG
1 AAATTTGATTGAATGCAAAA-TT-AAGAGAAATTTCTATAAGCATTCAAATTGGGA-GAAAATGG
* * * *
31918917 ACTATCATGCCAAACTACACAGCAAAATTGGCCTACCAAAATTGATTGAATGCAAAATTAAGAGG
63 ACTGTCATGCCAAACTACCCAGCCAAATT--CCTGCCAAAATTGATTGAATGCAAAATTAAGAGG
* * * * * * * *
31918982 ACATGTCTATAAGCATTCAAATTGGGGCGAAATAGACTGTCTTGCCAAACT-----GCC---C-A
126 AAATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAACCAAACTA
*
31919038 ----GCCA
191 CCTTACCA
* *
31919042 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGG-GCGAAATGGA
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTGGGAG-AAAATGGA
*
31919106 CTGTCATGCCAAACT-----GCC----T--TGCCAAAATTGGATTGAATGCAAAATTAAGAGGAC
64 CTGTCATGCCAAACTACCCAGCCAAATTCCTGCCAAAATT-GATTGAATGCAAAATTAAGAGGAA
** * * * * * *
31919160 ATTTCTATTGGCACTCCAATTGGGACAAAACGGATTGTCATGCCAAACTACCCAACCAAACTGCC
128 ATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAACCAAACTACC
* *
31919225 TTGCCC
193 TTACCA
* * *
31919231 AAATTTTATTGAATGCAACAA-TAAGAGGACATTTCTATAAGCATTCAAATTGGGATG-AAATAG
1 AAATTTGATTGAATGCAA-AATTAAGA-GAAATTTCTATAAGCATTCAAATTGGGA-GAAAATGG
* * * * * *
31919294 ACGGTCACGCCAAACTACCCTGCCAAATTGCCATGCTAAAATTGATTGAATGCTAAATTAATAGG
63 ACTGTCATGCCAAACTACCCAGCCAAATT-CC-TGCCAAAATTGATTGAATGCAAAATTAAGAGG
* * * *
31919359 ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTTATGCAAAACTACCCAGCCAAACTA
126 AAATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAACCAAACTA
* **
31919424 CCCTGGCA
191 CCTTACCA
* * * *
31919432 AAA-TTGATTGAACT-CCAAATTTAGAGGACAA-TTCTAAAAGCATTCAAATTAGGATG-AAATG
1 AAATTTGATTGAA-TGCAAAATTAAGA-GA-AATTTCTATAAGCATTCAAATTGGGA-GAAAATG
* * *
31919493 GATTGTCATGCCAAACTATCCAGCCAAATTACCTAGCTAAACTACCCAACCAAAATTTGATGGAA
62 GACTGTCATGCCAAACTACCCAGCCAAATT-CCT-G-------------CCAAAA-TTGATTGAA
* * ** * ** ** * * * *
31919558 TGAAAAAATAAGAGGGCAGTTAAATAAATATTCAAATTGGGACGAAATAGACAGTCATGCAAAAA
111 TGCAAAATTAAGAGGAAATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCAAAAC
* * * * *
31919623 TACCCAGCCAAATTTCCCTGCCA
176 TACCCAACCAAACTACCTTACCA
* * * * * *
31919646 AAATTTGATTGAATGCAAAACTAAGAGGACATTTCAATAAACATACAAATTGGAACG-AAATGGA
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTGGGA-GAAAATGGA
** * * * * * *
31919710 CTGTCATGTAAAACTATCTAGCCAAACATCCCTGCCAAAATTGACTAAATGCAAAATTAATAGGA
64 CTGTCATGCCAAACTACCCAGCC-AA-ATTCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGA
* * * * * *
31919775 CATTTCTATAAGCATTCAAATTGGTACAAAAATGGACTTTCATGTAATACTACCC-AGC-AA-TA
127 AATTTCTATAAGCATTCAAATTGGGAC-AAAATGGACTGTCATGCAAAACTACCCAACCAAACTA
31919837 --TT----
191 CCTTACCA
* * * * *
31919839 AGA----ATT-AATGCAAAATTAAGAGGACA-TTCTATAAGTAGTT-AAATTGAGACAAAATGGA
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCA-TTCAAATTGGGAGAAAATGGA
* * * * * * ** * *
31919897 TTGTCAAGCAAAACTTCCAAGCAAAACAGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAAG
64 CTGTCATGCCAAACTACCCAGC-CAA-ATTCCTGCCAA-AATTGATTGAATGCAAAATTAAGAGG
** * * * * * * *
31919962 TCATTCCTATAACCATTGAAATTTGGACGAAATGGACTGTCATGCTAAACT-----ACC---CTG
126 AAATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAACCAAACTA
31920019 CCTT----
191 CCTTACCA
* * * * * *
31920023 -AATTTGAGTAAATGAAAAATTAATATGACATTTCTGTAAG-AGTTCAAATAT-GGATG-AAATG
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCA-TTCAAAT-TGGGA-GAAAATG
* * * *
31920084 GACAGTCATTCCAAACTACCCAGCCAAATTTCCCAGCCAAAATTTTATTGAATGCAAAATTAAGA
62 GACTGTCATGCCAAACTACCCAGCCAAA-TT-CCTGCCAAAA-TTGATTGAATGCAAAATTAAGA
* * * * * * * * * * * *
31920149 GGACATTTCGATAAACATACAAATTGGAACGAAATGGACTATCATGCAAAACTATCTAGCTAACC
124 GGAAATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAACCAAAC
* * * *
31920214 T-TCTCCATCG
189 TACCT-TACCA
** * ** *
31920224 AAA-TTGATTGAATGCAAAATTAAGAGAACGGTTCTATAAGCATTTAAATTGGGACTAAATGAAC
1 AAATTTGATTGAATGCAAAATTAAGAGAA-ATTTCTATAAGCATTCAAATTGGGAGAAAATGGAC
* *
31920288 TGTCATG-C-AA-TA-CTA--C-----CCTGCCAAAATTGATTGAATGCTAAATTAAGA-GAACA
65 TGTCATGCCAAACTACCCAGCCAAATTCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGAA-A
** ** * * * * *
31920341 TTT-TATAAGCATTCAAATTACGAGGAAATAGACAGTCATGCCAAACTACCCAGCCAAACTGTCC
129 TTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAACCAAACT-ACC
*
31920405 -TGCCA
193 TTACCA
* * * ** *
31920410 ATATTTGATTGAATGCACAATTAAGAGGACATTTCTATAAAAATTCAAATTGCGACG-AAATGGA
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTGGGA-GAAAATGGA
* * * * *
31920474 CTGTCATGCCAAAATAACAAGCCAAACTACCTTGCCAATATTTGATTGAATGCAAAATTAAGAGG
64 CTGTCATGCCAAACTACCCAGCCAAA-TTCC-TGCCAA-AATTGATTGAATGCAAAATTAAGAGG
* * **
31920539 ACATTTCT-TAAAGCATTCAAATTTGGACAAAATGGACT-T--T-------TA---TGCCAAACT
126 AAATTTCTAT-AAGCATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAACCAAACT
* *
31920590 GCCCTACCA
190 ACCTTACCA
* ** *
31920599 AAATTTGATTGAATGTAAAATTAAGAGGGCATTTCTAT-AGACATTCAAATTGGTACG-AAATGG
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAG-CATTCAAATTGGGA-GAAAATGG
* * * * * *
31920662 ACTGTAATGCCAAACTACCCGGCCAAACTGCTCTACCAAAATTGATTGAATGTAAACTTAAGAGG
63 ACTGTCATGCCAAACTACCCAGCCAAA-TTC-CTGCCAAAATTGATTGAATGCAAAATTAAGAGG
* * * * * * * * * *
31920727 ACATTTTTATAAGTAATAAAATTGGGACGAAATGGACTGTCAAGCCAAACTACCCAGCCAAACTT
126 AAATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAACCAAACTA
31920792 CACTT-CCA
191 C-CTTACCA
* ** *
31920800 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTTTATTTGGGATG-AAATGGA
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTGGGA-GAAAATGGA
* * * * * * * * *
31920864 CTATCATGCCAAACTGCCTAACCCAACTTTCCTGCCAAAATTGATTGAATTCGAACTTACGAGGA
64 CTGTCATGCCAAACTACC-CAGCCAA-ATTCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGA
* * * ** * *
31920929 CATTTCTATAAACATTCAAATTGGGACGAAATTAATTGTCATGGC-AAACTATCCAACCAAACTA
127 AATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCAT-GCAAAACTACCCAACCAAACTA
* *
31920993 CCATGCCA
191 CCTTACCA
* * * * * *
31921001 AAA-TTGATTGAATGCAAAATTAAAAGGACATTTCTACAAGAATTCAAATTGGGACAAAATGAAC
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTGGGAGAAAATGGAC
* * * * * * *
31921065 GGTCATGCCAAACTACCCAACCAAACTGCTATGCTACAATTGATTGAATGCAAAATTAAGAGGAC
65 TGTCATGCCAAACTACCCAGCCAAA-TTC-CTGCCAAAATTGATTGAATGCAAAATTAAGAGGAA
* * * ** * *
31921130 ATTTCTATAAGCATTCAAATTGGTACGAAATGGACTG-CAATGCTAAACTACCCGGCCAAATTGC
128 ATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTC-ATGCAAAACTACCCAACCAAACTAC
*
31921194 CCTACCA
192 CTTACCA
* * * * * * *
31921201 AAA-TCGATT-AATGCAAATTTTAGAGGACATTTCTATAAGCATTTAAATAGGGACAAAATGGAC
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTGGGAGAAAATGGAC
** * * * *
31921264 TG-CCCGCCTAACTA-CC-G----A-----GCCAAAATTTGATTGCATGCAAAATTAAGATGACA
65 TGTCATGCCAAACTACCCAGCCAAATTCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGGAAA
* * * * * *
31921317 TTTCTATAA-TAGTTCAAATTGGGACGAAGA-GGACAGTCATGCAAAAATACCCAACCAAATTTC
129 TTTCTATAAGCA-TTCAAATTGGGAC-AAAATGGACTGTCATGCAAAACTACCCAACCAAACTAC
*
31921380 CTTGCCA
192 CTTACCA
* * * *
31921387 AAATTTGATT-AATTGC-AAATTAAAAATGACATTTCGATACA-CATTCAAATTAGGATG-AAAT
1 AAATTTGATTGAA-TGCAAAATT-AAGA-GAAATTTCTATA-AGCATTCAAATTGGGA-GAAAAT
*
31921448 GGACTGTCATGCAAAACTACCCAGCCAAACTTCCCTGCCAAAATTGATTGAATGCAAAATTAAGA
61 GGACTGTCATGCCAAACTACCCAGCCAAA-TT-CCTGCCAAAATTGATTGAATGCAAAATTAAGA
* * * * * ** * * * * * *
31921513 AGACATTTCTATAAACATTCAAATTGGTACGAAATTAACAGTCATACCAAACTACCCAGCTAAAT
124 GGAAATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAACCAAAC
* * *
31921578 TGCCCTGCCA
189 TACCTTACCA
* * * * * *
31921588 ATATTTGATTGTATGCAAAATTAAGAGGAAATTTCTATAGGCGTTCAAATTAGGACAAAATGGAC
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTGGGAGAAAATGGAC
* ** * * ** * *
31921653 TGTCAGGCCAAACTACCCAGCCAAACAACCCTTCCAATATTTGATTGAATAAAAAATTAAGAAGT
65 TGTCATGCCAAACTACCCAGCC-AA-ATTCCTGCCAA-AATTGATTGAATGCAAAATTAAGAGGA
* * ** *
31921718 CATTTCTATAAGTATT-ATAATTGGGATGAAATGGAC--TC-T-C---A-T-----GCCAAACTA
127 AATTTCTATAAGCATTCA-AATTGGGACAAAATGGACTGTCATGCAAAACTACCCAACCAAACTA
* *
31921769 CCCTGCCA
191 CCTTACCA
* * * *
31921777 AAA-TTGATTGAACGCAAATTTAAGAGGACATTTCTATAAGCATTCAAATTGGTACG-AAATGGA
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTGGGA-GAAAATGGA
** * * * *
31921840 CAATCATACCAAACTACCCAGCCAAACTGCCCTGCCAATATTTGATTGAATGTAAAATTAAGAGG
64 CTGTCATGCCAAACTACCCAGCCAAA-T-TCCTGCCAA-AATTGATTGAATGCAAAATTAAGAGG
* * * *** *
31921905 ATATTTCTATAGGCATTCAAATTGGGA-AGAAATGGACTGTCATGCCAAACTATTGAGCCAAAC-
126 AAATTTCTATAAGCATTCAAATTGGGACA-AAATGGACTGTCATGCAAAACTACCCAACCAAACT
* *
31921968 AGCCCTGCCA
190 A-CCTTACCA
** * ** * *
31921978 ATGTTTGATTAAATGCAAAATTAAGAAGTTATTTCTATAAGCATT-ATACTTGGGACG-AAATAG
1 AAATTTGATTGAATGCAAAATTAAG-AGAAATTTCTATAAGCATTCA-AATTGGGA-GAAAATGG
* * *
31922041 ACTGTCATGCCAAACTACCCAGCC-AA----T-----ATTTGATTGAATGCAAAATTAAAAGGAC
63 ACTGTCATGCCAAACTACCCAGCCAAATTCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGAA
* ** * * * * **
31922096 CTTTCTATAAATATTCTAATTTGTACAAAATGGATTGTCATG-----------AA--AAACTTTC
128 ATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAACCAAACTACC
* *
31922148 ATGCCA
193 TTACCA
* * ** * * **
31922154 AAA-TTGATTGAATGAAAAATTAAAATGGCATTTTTATAAGCATTAAAATTGGGACG-AAATTTA
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTGGGA-GAAAATGGA
* * * * *
31922217 CTGTCAAGCCAAACT-CCCAAGCCAAACTACCCTACCAATATTTGATTGAATG-TAAATTAAGAG
64 CTGTCATGCCAAACTACCC-AGCCAAA-T-TCCTGCCAA-AATTGATTGAATGCAAAATTAAGAG
* ** * * *
31922280 GACATTTCTATAAGCATTCAAATTGGGATGAAATGGACTGTCATGCCAAACTACCCAGCCAAACA
125 GAAATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAACCAAACT
* * *
31922345 ACCCTGCCG
190 ACCTTACCA
** * * *
31922354 GTATTTGATTGAATGCAAAATTAAGAGGATATTTCTATAAGCATTCAAATTGAGACAAAATGGAC
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTGGGAGAAAATGGAC
* * * *
31922419 TGTCATGCCAAGCTACCCAGCCATACTGCCTTGCCAAAATTTGATTGAATTCAAAATTAAGA-GA
65 TGTCATGCCAAACTACCCAGCCA-AATTCC-TGCCAAAA-TTGATTGAATGCAAAATTAAGAGGA
* * * * **
31922483 ATATTTTTATAAACAATCAAATTGGGAC-AAATGGACTGTTATGC----C-A---AA-C-TGC--
127 A-ATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAACCAAACTA
31922535 CCTT-CCA
191 CCTTACCA
* * ** *
31922542 AAATTTGATGGAATGCAAGATTAAGAAGTCATTTCTATAAGCATTCAAATTAGGACG-AAATGGA
1 AAATTTGATTGAATGCAAAATTAAG-AGAAATTTCTATAAGCATTCAAATTGGGA-GAAAATGGA
* *** *
31922606 CTATCATGTTGAACTACCCAG----------G-CAAAATTTGATTGAATGCAAAATTAAGAGGAC
64 CTGTCATGCCAAACTACCCAGCCAAATTCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGGAA
* * * * * * ** *
31922660 ATTTTTATAAGTATTCAAATTGGGTCGAAATGTACTGTAATGTC-AAACTACCCAGTCAAACTGC
128 ATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATG-CAAAACTACCCAACCAAACTAC
* *
31922724 CCTGCCA
192 CTTACCA
* * * * * *
31922731 AAATTAGATTGAATGTAAAATTAAGAAGACATTTGTATAAGCATTAAAATTGGGATG-AAATTGA
1 AAATTTGATTGAATGCAAAATTAAG-AGAAATTTCTATAAGCATTCAAATTGGGA-GAAAATGGA
* * * * * *
31922795 CTGTCATGCCAAACTACCTAGCAAAACTGACTTGCCAAAATTTGATTGAATGTAAAATTAAGAAG
64 CTGTCATGCCAAACTACCCAGCCAAA-T-TCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGG
* * * ** * * * * *
31922860 ACATTTGTATAAGCATTAAAATTGGGATGAAATTGACTGTCATGCCAAACTACCTAGCAAAACTG
126 AAATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAACCAAACT-
*
31922925 A-CTTGCCA
190 ACCTTACCA
* * * *
31922933 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTAAAATTGGGACG-AAATGTA
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTGGGA-GAAAATGGA
** * ** * * *
31922997 CTGTCATGGGAACCTACCCAGCCAAACAACCATACCAAAATTGATGGAATGC-AAATTTA-A-GA
64 CTGTCATGCCAAACTACCCAGCCAAA-TTCC-TGCCAAAATTGATTGAATGCAAAATTAAGAGGA
* *** * * * *
31923059 CATTTCTATATTTATTCAAATTGGGACGAAATTGACT-TGCATG------T---CAAAC-AGC--
127 AATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGT-CATGCAAAACTACCCAACCAAACTA
*
31923111 CC-TGCCA
191 CCTTACCA
* *
31923118 AAATTTGATTGAATGCAAAATTAAGTAGACATTTCTATAAGGATTCAAATTGGGATG-AAATGGA
1 AAATTTGATTGAATGCAAAATTAAG-AGAAATTTCTATAAGCATTCAAATTGGGA-GAAAATGGA
* * * * *
31923182 CTGTTATGCCAAACTACCCAACCAATCTGTCCTGCCAAAATTTGATTGGATTCAAAATTAAGAGG
64 CTGTCATGCCAAACTACCCAGCCAA-AT-TCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGG
* * * * * * * * *
31923247 ACATTTCTATAAGCATTCAAATTAGGACGAAATGTACTGTCATGCCAAACTACGCAGCCAAATTG
126 AAATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAACCAAACTA
* *
31923312 CCCTATCGGGA
191 CCTTA-C--CA
* * ** * ** * *
31923323 GAAAATGGACAGTCATGTC-AAATT-A-CCAAA---CCA-AACTGCCTTGCCAAAATTGGATTGA
1 -AAATTTGATTG-AATG-CAAAATTAAGAGAAATTTCTATAA--GCATT--C-AAATTGG---G-
* * * ** * ** ** ** * * * *
31923381 ATGCAAAATTAAGA-GGACATTTC-TA-TAAGCATTCAAATT-GAGACGAAATTGACTGTCATGC
54 A-G-AAAA-T-GGACTGTCATGCCAAACTACCCAGCCAAATTCCTGCCAAAATTGATTG-AATGC
* * * ** * ** **
31923442 CAAACTACCCAGA-TAAACTGCCCTTCTA-AA--ATT-TGATT-GAACTCAAAATTAAAAGT-A-
114 AAAATTA---AGAGGAAA-T----TTCTATAAGCATTCAAATTGGGA--CAAAATGGACTGTCAT
*** * *
31923499 G-ATTTCTA--TAAGC--A-T---TT----
169 GCAAAACTACCCAACCAAACTACCTTACCA
* *** *
31923516 AAATTTAATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTAAAAAAAATGGAC
1 AAATTTGATTGAATGCAAAATTAAGAG-AAATTTCTATAAGCATTCAAATTGGGAGAAAATGGAC
* *
31923581 TGTCATGCTAAACTACCCAGCCAAAATTCCCTTCCAAAATTGGATTGAATGCAAAATTAA-AGGA
65 TGTCATGCCAAACTACCCAGCC-AAATT-CCTGCCAAAATT-GATTGAATGCAAAATTAAGAGGA
* * * * * * *
31923645 CATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCTTGCCAAACTACCTAGCCAAACTGC
127 AATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAACCAAACTAC
* *
31923710 CCTATCA
192 CTTACCA
* * * *
31923717 AAA-TTGATTGAATGCAAAGTTAAGAAAACATTTCTATAAGCATTAAAATTGGGATG-AAATAGA
1 AAATTTGATTGAATGCAAAATTAAGAGAA-ATTTCTATAAGCATTCAAATTGGGA-GAAAATGGA
* * * *
31923780 CTGTCATGCCAAACTACCAAACTAAATTGCCCTGCCAAAATTGATTGAATGCAAAATTATGA-GA
64 CTGTCATGCCAAACTACCCAGCCAAATT--CCTGCCAAAATTGATTGAATGCAAAATTAAGAGGA
* ** * * ** * *
31923844 ACATTTTTATAAAAATTAAAATTGGGACAAAATGGACTGTTACACTAAACTACCCAACCAAACTG
127 A-ATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAACCAAACTA
*
31923909 CCTTTCCA
191 CCTTACCA
* * * * *
31923917 AAATTTGATTGAATGCAAAATTGAGAGGACATTTATATAAGCATACAAATTGGGACAAAATGGAC
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTGGGAGAAAATGGAC
* *
31923982 TGTCATGCCAAACTACCCAGCAAAACTATTCTGCCAAAATTGATTGAATGCAAAATTAAGAGGAA
65 TGTCATGCCAAACTACCCAGCCAAA-T-TCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGAA
* * * * * * *
31924047 ACTTCCATAAGCATTCAAATTGAGAGAAAATGGACTGTCATGCCAAACTATCCAACCAAACTGCC
128 ATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAACCAAACTACC
*
31924112 CTACCA
193 TTACCA
* * * * * * * * *
31924118 AAATTTGATTGAATGCAAAATTTAGAGGACACTGCTTTAAGCATTTAAATTGGGATAGAATAGAC
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTGGGAGAAAATGGAC
* * *
31924183 TATCATGCCAAACTACCCAGCAAAATTGGCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGAC
65 TGTCATGCCAAACTACCCAGCCAAATT--CCTGCCAAAATTGATTGAATGCAAAATTAAGAGGAA
* * * * * * *
31924248 ATTTCTATAAGCATTCAAATTGGGGCGAAATTGACTGTCATGCCAAACGACCCAGCCAAACTGCC
128 ATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAACCAAACTACC
* *
31924313 -CAGACA
193 TTA-CCA
* *
31924319 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTTGGACG-AAATGGA
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTGGGA-GAAAATGGA
* *
31924383 CTGTTATACCAAA
64 CTGTCATGCCAAA
31924396 TTGCCCTAGC
Statistics
Matches: 4633, Mismatches: 924, Indels: 783
0.73 0.15 0.12
Matches are distributed among these distances:
174 4 0.00
175 123 0.03
176 92 0.02
177 1 0.00
178 1 0.00
179 1 0.00
180 1 0.00
181 3 0.00
182 2 0.00
183 10 0.00
184 6 0.00
185 98 0.02
186 161 0.03
187 229 0.05
188 489 0.11
189 487 0.11
190 13 0.00
191 32 0.01
192 17 0.00
193 11 0.00
194 10 0.00
195 6 0.00
196 10 0.00
197 12 0.00
198 58 0.01
199 97 0.02
200 410 0.09
201 1303 0.28
202 431 0.09
203 15 0.00
204 200 0.04
205 43 0.01
206 16 0.00
207 21 0.00
208 6 0.00
209 9 0.00
210 15 0.00
211 15 0.00
212 5 0.00
213 9 0.00
214 89 0.02
215 65 0.01
216 5 0.00
217 2 0.00
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.27
Consensus pattern (198 bp):
AAATTTGATTGAATGCAAAATTAAGAGAAATTTCTATAAGCATTCAAATTGGGAGAAAATGGACT
GTCATGCCAAACTACCCAGCCAAATTCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGAAATT
TCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAACCAAACTACCTTA
CCA
Found at i:31919108 original size:88 final size:88
Alignment explanation
Indices: 31918952--31919219 Score: 385
Period size: 88 Copynumber: 3.1 Consensus size: 88
31918942 AATTGGCCTA
* *
31918952 CCAAAA-TTGATTGAATGCAAAATTAAGAGGACATGTCTATAAGCATTCAAATTGGGGCGAAATA
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAAATG
*
31919016 GACTGTCTTGCCAAACTGCCCAG
66 GACTGTCATGCCAAACTGCCCAG
31919039 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAAATG
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAAATG
**
31919104 GACTGTCATGCCAAACTGCCTTG
66 GACTGTCATGCCAAACTGCCCAG
* ** * * * * *
31919127 CCAAAATTGGATTGAATGCAAAATTAAGAGGACATTTCTATTGGCACTCCAATTGGGACAAAACG
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAAATG
* * *
31919192 GATTGTCATGCCAAACTACCCAA
66 GACTGTCATGCCAAACTGCCCAG
31919215 CCAAA
1 CCAAA
31919220 CTGCCTTGCC
Statistics
Matches: 162, Mismatches: 18, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
87 6 0.04
88 156 0.96
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (88 bp):
CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAAATG
GACTGTCATGCCAAACTGCCCAG
Found at i:31919306 original size:101 final size:100
Alignment explanation
Indices: 31919113--31920312 Score: 587
Period size: 100 Copynumber: 12.1 Consensus size: 100
31919103 GGACTGTCAT
* * * ** * *
31919113 GCCAAACTGCCTTGCCAAAATTGGATTGAATGCAAAATTAAGAGGACATTTCTATTGGCACTCCA
1 GCCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTCAA
* * * *
31919178 ATTGGGACAAAACGGATTGTCATGCCAAACTACCCA
65 ATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * *
31919214 ACCAAACTGCCTTGCCCAAATTTTATTGAATGCAACAATAAGAGGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCCAAATTTGATTGAATGCAA-AATAAGAGGACATTTCTATAAGCATTCAA
* * * * * *
31919279 ATTGGGATGAAATAGACGGTCACGCCAAACTACCCT
65 ATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * * * * *
31919315 GCCAAATTGCCATG-CTAAAATTGATTGAATGCTAAATTAATAGGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCCAAATTTGATTGAATGC-AAAATAAGAGGACATTTCTATAAGCATTCAA
*
31919379 ATTGGGACGAAATGGACTGTTATGCAAAACTACCCA
65 ATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * * * * * * *
31919415 GCCAAACTACCCTG-GCAAAATTGATTGAACTCCAAATTTAGAGGACAATTCTAAAAGCATTCAA
1 GCCAAACTGCCCTGCCCAAATTTGATTGAA-TGCAAAATAAGAGGACATTTCTATAAGCATTCAA
* * * * *
31919479 ATTAGGATGAAATGGATTGTCATGCCAAACTATCCA
65 ATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * ***** * * ** * ***
31919515 GCCAAATTACCTAGCTAAACTACCCAACCAAAATTTG-ATGGAATGAA-AAAATAAGAGGGC-AG
1 GCC-AA--A-CT-GC---CCTGCCCAAATTTGA-TTGAATGCAA--AATAAGAGGACATTTCTA-
** * * *
31919577 TTAAATAAATATTCAAATTGGGACGAAATAGACAGTCATGCAAAAATACCCA
54 -TAAGC----ATTCAAATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * * * * *
31919629 GCCAAATTTCCCTGCCAAAATTTGATTGAATGCAAAACTAAGAGGACATTTCAATAAACATACAA
1 GCCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTCAA
* * * *
31919694 ATTGGAACGAAATGGACTGTCATGTAAAACTATCTA
65 ATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * * *
31919730 GCCAAACAT-CCCTG-CCAAAATTGACTAAATGCAAAATTAATAGGACATTTCTATAAGCATTCA
1 GCCAAAC-TGCCCTGCCCAAATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTCA
* * * * *
31919793 AATTGGTACAAAAATGGACTTTCATGTAATACTACCCA
64 AATTGGGAC-GAAATGGACTGTCATGCAAAACTACCCA
* *
31919831 G-C-AA------T------ATTAGAATT-AATGCAAAATTAAGAGGACA-TTCTATAAGTAGTT-
1 GCCAAACTGCCCTGCCCAAATTTG-ATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCA-TTC
* * * * * *
31919879 AAATTGAGACAAAATGGATTGTCAAGCAAAACTTCCAA
63 AAATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * * * * * *
31919917 GCAAAACAGCCCTG-CCAATATTTGATTGAATGCAAAATTAAGAAGTCATTCCTATAACCATTGA
1 GCCAAACTGCCCTGCCCAA-ATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTCA
* *
31919981 AATTTGGACGAAATGGACTGTCATGCTAAACT----A
64 AATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * * * * * *
31920014 -CC---CTG-CCT----TAATTTGAGTAAATGAAAAATTAATATGACATTTCTGTAAG-AGTTCA
1 GCCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCA-TTCA
* * * *
31920069 AATAT-GGATGAAATGGACAGTCATTCCAAACTACCCA
64 AAT-TGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * * * * * * *
31920106 GCCAAATTTCCCAGCCAAAATTTTATTGAATGCAAAATTAAGAGGACATTTCGATAAACATACAA
1 GCCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTCAA
* * * *
31920171 ATTGGAACGAAATGGACTATCATGCAAAACTATCTA
65 ATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * * * * ** *
31920207 GCTAACCTTCTCCAT--CGAAA-TTGATTGAATGCAAAATTAAGAGAACGGTTCTATAAGCATTT
1 GCCAAACTGC-CC-TGCCCAAATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTC
* * * *
31920269 AAATTGGGACTAAATGAACTGTCATGCAATACTACCCT
63 AAATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
31920307 GCCAAA
1 GCCAAA
31920313 ATTGATTGAA
Statistics
Matches: 824, Mismatches: 210, Indels: 131
0.71 0.18 0.11
Matches are distributed among these distances:
86 22 0.03
87 19 0.02
88 85 0.10
89 4 0.00
92 4 0.00
93 5 0.01
94 1 0.00
96 2 0.00
97 3 0.00
99 5 0.01
100 297 0.36
101 275 0.33
102 6 0.01
103 1 0.00
104 4 0.00
105 8 0.01
106 18 0.02
107 1 0.00
108 6 0.01
109 11 0.01
110 7 0.01
111 1 0.00
113 2 0.00
114 37 0.04
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.26
Consensus pattern (100 bp):
GCCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAATAAGAGGACATTTCTATAAGCATTCAAA
TTGGGACGAAATGGACTGTCATGCAAAACTACCCA
Found at i:31919343 original size:289 final size:287
Alignment explanation
Indices: 31919025--31924444 Score: 3353
Period size: 289 Copynumber: 18.5 Consensus size: 287
31919015 AGACTGTCTT
31919025 GCCAAACTGCCCA-GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
1 GCCAAACTG-CCATGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * *
31919089 AATTGGGGCGAAATGGACTGTCATGCCAAACTGCCTTGCCAAAATTGGATTGAATGCAAAATTAA
64 AATTGGGACGAAATGGACTGTCATGCCAAACTACCCTGCCAAAATT-GATTGAATGCAAAATTAA
** * * * * * *
31919154 GAGGACATTTCTATTGGCACTCCAATTGGGACAAAACGGATTGTCATGCCAAACTACCCAACCAA
128 GAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAA
*
31919219 ACTGCCTTGCCCAAATTTTATTGAATGCAACAA-TAAGAGGACATTTCTATAAGCATTCAAATTG
193 ACTGCCTTG-CCAAATTTGATTGAATGCAA-AATTAAGAGGACATTTCTATAAGCATTCAAATTG
* * * * *
31919283 GGATGAAATAGACGGTCACGCCAAACTACCCT
256 GGACGAAATGGACTGTCATGCCAAACTACCCA
* * * *
31919315 GCCAAATTGCCATGCTAAAATTGATTGAATGCTAAATTAATAGGACATTTCTATAAGCATTCAAA
1 GCCAAACTGCCATGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
*
31919380 TTGGGACGAAATGGACTGTTATGCAAAACTACCCAGCCAAACTACCCTGGCAAAATTGATTGAAC
66 TTGGGACGAAATGGACTG---T-C---A-T-----GCCAAACTACCCTGCCAAAATTGATTGAA-
* * * * * * *
31919445 T-CCAAATTTAGAGGACAATTCTAAAAGCATTCAAATTAGGATGAAATGGATTGTCATGCCAAAC
117 TGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAAC
* ** * * * *
31919509 TATCCAGCCAAATTACCTAGCTAAACTACCCAACCAAAATTTGATGGAATGAAAAAATAAGAGGG
182 TACCCAGCC-AA--A-CT-GC----CT----TGCC-AAATTTGATTGAATGCAAAATTAAGAGGA
* ** ** * * * *
31919574 CAGTTAAATAAATATTCAAATTGGGACGAAATAGACAGTCATGCAAAAATACCCA
233 CATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCA
* * * * * * *
31919629 GCCAAATTTCCCTGCCAAAATTTGATTGAATGCAAAACTAAGAGGACATTTCAATAAACATACAA
1 GCCAAACTGCCATGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * *
31919694 ATTGGAACGAAATGGACTGTCATGTAAAACTATCTAGCCAAAC-ATCCCTGCCAAAATTGACTAA
65 ATTGGGACGAAATGGA----C-TGT----C-A--T-GCCAAACTA-CCCTGCCAAAATTGATTGA
* * * * *
31919758 ATGCAAAATTAATAGGACATTTCTATAAGCATTCAAATTGGTACAAAAATGGACTTTCATG-TAA
116 ATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC-GAAATGGACTGTCATGCCAA
* *
31919822 TACTACCCAG-C-AA-T--ATT---AGA----ATT-AATGCAAAATTAAGAGGACA-TTCTATAA
180 -ACTACCCAGCCAAACTGCCTTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAA
* * * * * * * *
31919873 GTAGTT-AAATTGAGACAAAATGGATTGTCAAGCAAAACTTCCAA
244 GCA-TTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCA
* * * * * * * * *
31919917 GCAAAACAGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAAGTCATTCCTATAACCATTGAA
1 GCCAAACTGCCATGCCAA-AATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * * * * * *
31919982 ATTTGGACGAAATGGACTGTCATGCTAAACTACCCTGCCTTAATTTGAGTAAATGAAAAATTAAT
65 ATTGGGACGAAATGGACTGTCATGCCAAACTACCCTGCC-AAAATTGATTGAATGCAAAATTAAG
* * * * *
31920047 ATGACATTTCTGTAAG-AGTTCAAATAT-GGATGAAATGGACAGTCATTCCAAACTACCCAGCCA
129 AGGACATTTCTATAAGCA-TTCAAAT-TGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* * ** * * * *
31920110 AATTTCCCAGCCAAAATTTTATTGAATGCAAAATTAAGAGGACATTTCGATAAACATACAAATTG
192 AACTGCCTTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTG
* * * * *
31920175 GAACGAAATGGACTATCATGCAAAACTATCTA
256 GGACGAAATGGACTGTCATGCCAAACTACCCA
* * * * * ** *
31920207 GCTAACCTTCTCCAT--CGAAATTGATTGAATGCAAAATTAAGAGAACGGTTCTATAAGCATTTA
1 GCCAAAC-T-GCCATGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * *
31920270 AATTGGGACTAAATGAACTGTCATG-CAATACTACCCTGCCAAAATTGATTGAATGCTAAATTAA
64 AATTGGGACGAAATGGACTGTCATGCCAA-ACTACCCTGCCAAAATTGATTGAATGCAAAATTAA
* ** * * *
31920334 GAGAACATTT-TATAAGCATTCAAATTACGAGGAAATAGACAGTCATGCCAAACTACCCAGCCAA
128 GAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAA
* **
31920398 ACTGTCC-TGCCAATATTTGATTGAATGCACAATTAAGAGGACATTTCTATAAAAATTCAAATTG
193 ACTG-CCTTGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTG
* * * *
31920462 CGACGAAATGGACTGTCATGCCAAAATAACAA
256 GGACGAAATGGACTGTCATGCCAAACTACCCA
* * *
31920494 GCCAAACTACCTTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCT-TAAAGCATTCA
1 GCCAAACTGCCATGCCAA-AATTGATTGAATGCAAAATTAAGAGGACATTTCTAT-AAGCATTCA
* * * * * * *
31920558 AATTTGGACAAAATGGACTTTTATGCCAAACTGCCCTACCAAAATTTGATTGAATGTAAAATTAA
64 AATTGGGACGAAATGGACTGTCATGCCAAACTACCCTGCCAAAA-TTGATTGAATGCAAAATTAA
* * * *
31920623 GAGGGCATTTCTAT-AGACATTCAAATTGGTACGAAATGGACTGTAATGCCAAACTACCCGGCCA
128 GAGGACATTTCTATAAG-CATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* * * * * * * *
31920687 AACTG-CTCTACCAAAATTGATTGAATGTAAACTTAAGAGGACATTTTTATAAGTAATAAAATTG
192 AACTGCCT-TGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTG
*
31920751 GGACGAAATGGACTGTCAAGCCAAACTACCCA
256 GGACGAAATGGACTGTCATGCCAAACTACCCA
* * **
31920783 GCCAAACT-TCACTTCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTTT
1 GCCAAACTGCCA-TGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * *
31920847 ATTTGGGATGAAATGGACTATCATGCCAAACTGCCTAACCCAACTTTCCTGCCAAAATTGATTGA
64 AATTGGGACGAAATGGACTGTCATGCCAAA----CT------AC---CCTGCCAAAATTGATTGA
* * * * * ** * *
31920912 ATTCGAACTTACGAGGACATTTCTATAAACATTCAAATTGGGACGAAATTAATTGTCATGGCAAA
116 ATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAA
* * * * * * * *
31920977 CTATCCAACCAAACTACCATGCCAAAATTGATTGAATGCAAAATTAAAAGGACATTTCTACAAGA
181 CTACCCAGCCAAACTGCCTTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGC
* * *
31921042 ATTCAAATTGGGACAAAATGAACGGTCATGCCAAACTACCCA
246 ATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCA
* * * *
31921084 ACCAAACTGCTATGCTACAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
1 GCCAAACTGCCATGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
* * *
31921149 TTGGTACGAAATGGACTG-CAATGCTAAACTACCCGGCCAAATTGCCCTACCAAAATCGATT-AA
66 TTGGGACGAAATGGACTGTC-ATGCCAAACTA--C--CC----TG-----CCAAAATTGATTGAA
* * * * * ** *
31921212 TGCAAATTTTAGAGGACATTTCTATAAGCATTTAAATAGGGACAAAATGGACTG-CCCGCCTAAC
117 TGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAAC
* * * *
31921276 TA-CC-G----A--G-C---CAAAATTTGATTGCATGCAAAATTAAGATGACATTTCTATAA-TA
182 TACCCAGCCAAACTGCCTTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA
* * *
31921328 GTTCAAATTGGGACGAAGA-GGACAGTCATGCAAAAATACCCA
247 -TTCAAATTGGGACGAA-ATGGACTGTCATGCCAAACTACCCA
* * * * * * *
31921370 ACCAAATTTCCTTGCCAAAATTTGATT-AATTGC-AAATTAAAAATGACATTTCGATACA-CATT
1 GCCAAACTGCCATGCCAAAA-TTGATTGAA-TGCAAAATT-AAGAGGACATTTCTATA-AGCATT
* * *
31921432 CAAATTAGGATGAAATGGACTGTCATGCAAAACTACCCAGCCAAACTTCCCTGCCAAAATTGATT
62 CAAATTGGGACGAAATGGACTG---T-C---A-T-----GCCAAACTACCCTGCCAAAATTGATT
* * * ** * *
31921497 GAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTGGTACGAAATTAACAGTCATACCA
114 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCA
* * * * *
31921562 AACTACCCAGCTAAATTGCCCTGCCAATATTTGATTGTATGCAAAATTAAGAGGAAATTTCTATA
179 AACTACCCAGCCAAACTGCCTTGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATA
* * * * *
31921627 GGCGTTCAAATTAGGACAAAATGGACTGTCAGGCCAAACTACCCA
243 AGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCA
** * * * ** * * *
31921672 GCCAAACAACCCTTCCAATATTTGATTGAATAAAAAATTAAGAAGTCATTTCTATAAGTATT-AT
1 GCCAAACTGCCATGCCAA-AATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA-
* * * *
31921736 AATTGGGATGAAATGGACTCTCATGCCAAACTACCCTGCCAAAATTGATTGAACGCAAATTTAAG
64 AATTGGGACGAAATGGACTGTCATGCCAAACTACCCTGCCAAAATTGATTGAATGCAAAATTAAG
* ** *
31921801 AGGACATTTCTATAAGCATTCAAATTGGTACGAAATGGACAATCATACCAAACTACCCAGCCAAA
129 AGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAA
* * * *
31921866 CTGCCCTGCCAATATTTGATTGAATGTAAAATTAAGAGGATATTTCTATAGGCATTCAAATTGGG
194 CTGCCTTGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGG
* ***
31921931 AAGAAATGGACTGTCATGCCAAACTATTGA
258 ACGAAATGGACTGTCATGCCAAACTACCCA
* * ** * * **
31921961 GCCAAACAGCCCTGCCAATGTTTGATTAAATGCAAAATTAAGAAGTTATTTCTATAAGCATT-AT
1 GCCAAACTGCCATGCCAA-AATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA-
* * * *
31922025 ACTTGGGACGAAATAGACTGTCATGCCAAACTACCCAGCCAATATTTGATTGAATGCAAAATTAA
64 AATTGGGACGAAATGGACTGTCATGCCAAACTACCCTGCCAA-AATTGATTGAATGCAAAATTAA
* * ** * * * * *
31922090 AAGGACCTTTCTATAAATATTCTAATTTGTACAAAATGGATTGTCATG-------A---A---AA
128 GAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAA
** * * * * * *
31922142 ACTTTCATGCCAAAATTGATTGAATGAAAAATTAAAATGG-CATTTTTATAAGCATTAAAATTGG
193 ACTGCCTTGCCAAATTTGATTGAATGCAAAATTAAGA-GGACATTTCTATAAGCATTCAAATTGG
** *
31922206 GACGAAATTTACTGTCAAGCCAAACT-CCCAA
257 GACGAAATGGACTGTCATGCCAAACTACCC-A
* * * * *
31922237 GCCAAACTACCCTACCAATATTTGATTGAATG-TAAATTAAGAGGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCATGCCAA-AATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* *
31922301 ATTGGGATGAAATGGACTGTCATGCCAAACTACCCAGCCAAACAACCCTGCCGGTATTTGATTGA
65 ATTGGGACGAAATGGACTGTCATGCCAAACTACCCTGCC--A-AA----------A-TTGATTGA
* * * *
31922366 ATGCAAAATTAAGAGGATATTTCTATAAGCATTCAAATTGAGACAAAATGGACTGTCATGCCAAG
116 ATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAA
* * * * * *
31922431 CTACCCAGCCATACTGCCTTGCCAAAATTTGATTGAATTCAAAATTAAGAGAATATTTTTATAAA
181 CTACCCAGCCAAACTGCCTTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAG
* *
31922496 CAATCAAATTGGGAC-AAATGGACTGTTATGCCAAACT-----
245 CATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCA
* * * *
31922533 GCC---CT----T-CCAAAATTTGATGGAATGCAAGATTAAGAAGTCATTTCTATAAGCATTCAA
1 GCCAAACTGCCATGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * *** * *
31922590 ATTAGGACGAAATGGACTATCATGTTGAACTACCCAGGCAAAATTTGATTGAATGCAAAATTAAG
65 ATTGGGACGAAATGGACTGTCATGCCAAACTACCCTGCCAAAA-TTGATTGAATGCAAAATTAAG
* * * * * * *
31922655 AGGACATTTTTATAAGTATTCAAATTGGGTCGAAATGTACTGTAATGTCAAACTACCCAGTCAAA
129 AGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAA
* * * * * *
31922720 CTGCCCTGCCAAAATTAGATTGAATGTAAAATTAAGAAGACATTTGTATAAGCATTAAAATTGGG
194 CTGCCTTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGG
* * *
31922785 ATGAAATTGACTGTCATGCCAAACTACCTA
258 ACGAAATGGACTGTCATGCCAAACTACCCA
* * * * * * *
31922815 GCAAAACTGACTTGCCAAAATTTGATTGAATGTAAAATTAAGAAGACATTTGTATAAGCATTAAA
1 GCCAAACTGCCATGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* *
31922880 ATTGGGATGAAATTGACTGTCATGCCAAACTACCTAGCAAAACTGACTTGCCAAAATTTGATTGA
65 ATTGGGACGAAATGGACTGTCATGCC-AA--A-CTA-C----C---C-TGCCAAAA-TTGATTGA
* * * ** *
31922945 ATGCAAAATTAAGAGGACATTTCTATAAACATTAAAATTGGGACGAAATGTACTGTCATGGGAAC
116 ATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAA
** * * * * * ***
31923010 CTACCCAGCCAAACAACCATACCAAAATTGATGGAATGC-AAATTTA-A-GACATTTCTATATTT
181 CTACCCAGCCAAACTGCCTTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGC
* *
31923072 ATTCAAATTGGGACGAAATTGACT-TGCATGTC-AA--A--CA
246 ATTCAAATTGGGACGAAATGGACTGT-CATGCCAAACTACCCA
* *
31923109 GCC---CTGCCA----AAATTTGATTGAATGCAAAATTAAGTA-GACATTTCTATAAGGATTCAA
1 GCCAAACTGCCATGCCAAAATTGATTGAATGCAAAATTAAG-AGGACATTTCTATAAGCATTCAA
* * *
31923166 ATTGGGATGAAATGGACTGTTATGCCAAACTACCCAACCAATCTGTCCTGCCAAAATTTGATTGG
65 ATTGGGACGAAATGGACTGTCATGCCAAACT---------A-C---CCTGCCAAAA-TTGATTGA
* * *
31923231 ATTCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATGTACTGTCATGCCAAA
116 ATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAA
* * ** * * ** * **
31923296 CTACGCAGCCAAATTGCCCTATCGGGAGAAAATGGACAGTCATGTC-AAATTACCA--A-A---C
181 CTACCCAGCCAAACTG-CCT-T---GCCAAATTTGATTG-AATG-CAAAATTAAGAGGACATTTC
* * * * * * ** * **
31923354 CA-AACTGCCTTGCCAAAATTGGATTGAATGCAAAATTAAGA-GGACATTTC-TA-TAAGCA
239 TATAA--GCATT--C-AAATTGG---G-A--CGAAA-T-GGACTGTCATGCCAAACTACCCA
** * * * * * * * * *
31923412 TTCAAATTG--A-GACGAAATTGACTGTCATGCCAAACTACCCAGA-TAAACTGCCCTTCTA-AA
1 GCCAAACTGCCATGCCAAAATTGATTG-AATGCAAAATTA---AGAGGACA-T----TTCTATAA
** * * ** ** * ** * * * ** * *
31923472 --ATT-TGATT-GAACTCAAAATTAAAAGTAGATTTC-TA-TAAGCAT-TTAAATTTAATTGAAT
57 GCATTCAAATTGGGA--CGAAATGGACTGT-CATGCCAAACT-ACCCTGCCAAAATTGATTGAAT
* * *** ** *
31923530 GCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTAAAAAAAATGGACTGTCATGCTAAACT
118 GCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACT
* * *
31923595 ACCCAGCCAAAATTCCCTT-CCAAAATTGGATTGAATGCAAAATTAA-AGGACATTTCTATAAGC
183 ACCCAGCC-AAACTGCCTTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGC
* *
31923658 ATTCAAATTGGGACGAAATGGACTGTCTTGCCAAACTACCTA
246 ATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCA
* ** * ** *
31923700 GCCAAACTGCCCTATCAAAATTGATTGAATGCAAAGTTAAGAAAACATTTCTATAAGCATTAAAA
1 GCCAAACTGCCATGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
* *
31923765 TTGGGATGAAATAGACTGTCATGCCAAACTACCAAACTAAATTGCCCTGCCAAAATTGATTGAAT
66 TTGGGACGAAATGGACTGTCATG--------CCAAACT--A---CCCTGCCAAAATTGATTGAAT
* * * ** * * * ** *
31923830 GCAAAATTATGAGAACATTTTTATAAAAATTAAAATTGGGACAAAATGGACTGTTACACTAAACT
118 GCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACT
* * * *
31923895 ACCCAACCAAACTGCCTTTCCAAAATTTGATTGAATGCAAAATTGAGAGGACATTTATATAAGCA
183 ACCCAGCCAAACTGCCTTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA
* *
31923960 TACAAATTGGGACAAAATGGACTGTCATGCCAAACTACCCA
247 TTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCA
* ** * * *
31924001 GCAAAACTATTC-TGCCAAAATTGATTGAATGCAAAATTAAGAGGAAACTTCCATAAGCATTCAA
1 GCCAAACT-GCCATGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
*
31924065 ATTGAGA-GAAAATGGACTGTCATGCCAAACTATCCAACCAAACTGCCCTACCAAAATTTGATTG
65 ATTGGGACG-AAATGGACTGTCATGCCAAAC--T---ACC---CTG-----CCAAAA-TTGATTG
* * * * * * * *
31924129 AATGCAAAATTTAGAGGACACTGCTTTAAGCATTTAAATTGGGA-TAGAATAGACTATCATGCCA
115 AATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGA-AATGGACTGTCATGCCA
* * *
31924193 AACTACCCAGCAAAATTGGCC-TGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATA
179 AACTACCCAGCCAAACT-GCCTTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATA
* * *
31924257 AGCATTCAAATTGGGGCGAAATTGACTGTCATGCCAAACGACCCA
243 AGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCA
*
31924302 GCCAAACTGCCCA-GACAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
1 GCCAAACTG-CCATGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * * * * *
31924366 AATTTGGACGAAATGGACTGTTATACCAAATTGCCCTAG-CAAAATTTAATTGAATGCAAAATTA
64 AATTGGGACGAAATGGACTGTCATGCCAAACTACCCT-GCCAAAA-TTGATTGAATGCAAAATTA
*
31924430 AAAGGACATTTCTAT
127 AGAGGACATTTCTAT
31924445 CTAATCTGTA
Statistics
Matches: 4008, Mismatches: 790, Indels: 665
0.73 0.14 0.12
Matches are distributed among these distances:
275 97 0.02
276 272 0.07
277 39 0.01
278 3 0.00
279 1 0.00
280 1 0.00
282 4 0.00
283 10 0.00
284 5 0.00
285 12 0.00
286 260 0.06
287 207 0.05
288 341 0.09
289 729 0.18
290 249 0.06
291 30 0.01
292 23 0.01
293 45 0.01
294 17 0.00
295 10 0.00
296 22 0.01
297 82 0.02
298 25 0.01
299 102 0.03
300 188 0.05
301 486 0.12
302 347 0.09
303 106 0.03
304 2 0.00
305 2 0.00
306 4 0.00
307 8 0.00
308 9 0.00
309 1 0.00
310 7 0.00
311 8 0.00
312 11 0.00
313 8 0.00
314 87 0.02
315 119 0.03
316 21 0.01
317 1 0.00
318 1 0.00
319 3 0.00
320 3 0.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (287 bp):
GCCAAACTGCCATGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
TTGGGACGAAATGGACTGTCATGCCAAACTACCCTGCCAAAATTGATTGAATGCAAAATTAAGAG
GACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACT
GCCTTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
AAATGGACTGTCATGCCAAACTACCCA
Found at i:31920390 original size:86 final size:87
Alignment explanation
Indices: 31920224--31920398 Score: 221
Period size: 86 Copynumber: 2.0 Consensus size: 87
31920214 TTCTCCATCG
* * ** * *
31920224 AAATTGATTGAATGCAAAATTAAGAGAACGGTTCTATAAGCATTTAAATTGGGACTAAATGAACT
1 AAATTGATTGAATGCAAAATTAAGAGAACGATTCTATAAGCATTCAAATTACGACGAAATGAACA
*
31920289 GTCATGCAATACTACCCTGCCA
66 GTCATGCAATACTACCCAGCCA
* * *
31920311 AAATTGATTGAATGCTAAATTAAGAGAAC-ATTTTATAAGCATTCAAATTACGAGGAAAT-AGAC
1 AAATTGATTGAATGCAAAATTAAGAGAACGATTCTATAAGCATTCAAATTACGACGAAATGA-AC
31920374 AGTCATGCCAA-ACTACCCAGCCA
65 AGTCATG-CAATACTACCCAGCCA
31920397 AA
1 AA
31920399 CTGTCCTGCC
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
85 1 0.01
86 44 0.58
87 31 0.41
ACGTcount: A:0.42, C:0.17, G:0.16, T:0.26
Consensus pattern (87 bp):
AAATTGATTGAATGCAAAATTAAGAGAACGATTCTATAAGCATTCAAATTACGACGAAATGAACA
GTCATGCAATACTACCCAGCCA
Found at i:31920497 original size:101 final size:101
Alignment explanation
Indices: 31920303--31921287 Score: 958
Period size: 100 Copynumber: 10.0 Consensus size: 101
31920293 TGCAATACTA
* * ** *
31920303 CCCTGCCAAAA-TTGATTGAATGCTAAATTAAGAGAACATTT-TATAAGCATTCAAATTACGAGG
1 CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
* *
31920366 AAATAGACAGTCATGCCAAACTACCCAGCCAAACTG
66 AAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
* * * ** *
31920402 TCCTGCCAATATTTGATTGAATGCACAATTAAGAGGACATTTCTATAAAAATTCAAATTGCGACG
1 CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
* * * *
31920467 AAATGGACTGTCATGCCAAAATAACAAGCCAAACTA
66 AAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
* * *
31920503 CCTTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCT-TAAAGCATTCAAATTTGGAC
1 CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTAT-AAGCATTCAAATTGGGAC
* *
31920567 AAAATGGACT-T--T-------TA---TGCCAAACTG
65 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
* * * *
31920591 CCCTACCAAAATTTGATTGAATGTAAAATTAAGAGGGCATTTCTAT-AGACATTCAAATTGGTAC
1 CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAG-CATTCAAATTGGGAC
* *
31920655 GAAATGGACTGTAATGCCAAACTACCCGGCCAAACTG
65 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
* * * * * * * *
31920692 CTCTACCAAAA-TTGATTGAATGTAAACTTAAGAGGACATTTTTATAAGTAATAAAATTGGGACG
1 CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
* *
31920756 AAATGGACTGTCAAGCCAAACTACCCAGCCAAACTT
66 AAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
* * ** * *
31920792 CACTTCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTTTATTTGGGATG
1 CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
* * * * * *
31920857 AAATGGACTATCATGCCAAACTGCCTAACCCAACTT
66 AAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
* * * * * *
31920893 TCCTGCCAAAA-TTGATTGAATTCGAACTTACGAGGACATTTCTATAAACATTCAAATTGGGACG
1 CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
** * * * * *
31920957 AAATTAATTGTCATGGCAAACTATCCAACCAAACTA
66 AAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
* * * * *
31920993 CCATGCCAAAA-TTGATTGAATGCAAAATTAAAAGGACATTTCTACAAGAATTCAAATTGGGACA
1 CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
* * *
31921057 AAATGAACGGTCATGCCAAACTACCCAACCAAACTG
66 AAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
** * * *
31921093 CTATGCTACAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGTACG
1 CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
* * *
31921157 AAATGGACTG-CAATGCTAAACTACCCGGCCAAATTG
66 AAATGGACTGTC-ATGCCAAACTACCCAGCCAAACTG
* * * * * * *
31921193 CCCTACCAAAA-TCGATT-AATGCAAATTTTAGAGGACATTTCTATAAGCATTTAAATAGGGACA
1 CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
** * *
31921256 AAATGGACTG-CCCGCCTAACTACCGAGCCAAA
66 AAATGGACTGTCATGCCAAACTACCCAGCCAAA
31921288 ATTTGATTGC
Statistics
Matches: 731, Mismatches: 134, Indels: 43
0.81 0.15 0.05
Matches are distributed among these distances:
87 2 0.00
88 69 0.09
89 2 0.00
91 3 0.00
98 18 0.02
99 61 0.08
100 361 0.49
101 215 0.29
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (101 bp):
CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
AAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
Found at i:31920688 original size:88 final size:88
Alignment explanation
Indices: 31920494--31920688 Score: 259
Period size: 88 Copynumber: 2.2 Consensus size: 88
31920484 AAAATAACAA
* *
31920494 GCCAAACTACCTTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTTAAAGCATTCAA
1 GCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTTAAAGCATTCAA
* *
31920559 ATTTGGACAAAATGGACTTTTAT
66 ATTTGGACAAAATGGACTGTAAT
* * * * *
31920582 GCCAAACTGCCCTACCAAAATTTGATTGAATGTAAAATTAAGAGGGCATTTC-TATAGACATTCA
1 GCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTTAAAG-CATTCA
*
31920646 AA-TTGGTACGAAATGGACTGTAAT
65 AATTTGG-ACAAAATGGACTGTAAT
*
31920670 GCCAAACTACCCGGCCAAA
1 GCCAAACTACCCTGCCAAA
31920689 CTGCTCTACC
Statistics
Matches: 92, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
87 8 0.09
88 84 0.91
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.28
Consensus pattern (88 bp):
GCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTTAAAGCATTCAA
ATTTGGACAAAATGGACTGTAAT
Found at i:31921395 original size:101 final size:100
Alignment explanation
Indices: 31921282--31921778 Score: 459
Period size: 101 Copynumber: 4.9 Consensus size: 100
31921272 TAACTACCGA
* * *
31921282 GCCAAAATTTGATTGCATGCAAAATTAAGATGACATTTCTATAATAGTTCAAATTGGGACGAAGA
1 GCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAA-AGTTCAAATTAGGACGAA-A
* * *
31921347 -GGACAGTCATGCAAAAATACCCAACCAAATTTCCTT
64 TGGACAGTCATGCAAAACTACCCAGCCAAATTTCCCT
* * *
31921383 GCCAAAATTTGATT-AATTGC-AAATTAAAAATGACATTTCGATACACA-TTCAAATTAGGATGA
1 GCCAAAATTTGATTGAA-TGCAAAATTAAGAA-GACATTTCTATA-A-AGTTCAAATTAGGACGA
* *
31921445 AATGGACTGTCATGCAAAACTACCCAGCCAAACTTCCCT
62 AATGGACAGTCATGCAAAACTACCCAGCCAAATTTCCCT
*
31921484 GCCAAAA-TTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATT-GGTACGAAA
1 GCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAA-GTTCAAATTAGG-ACGAAA
** * * * *
31921547 TTAACAGTCATACCAAACTACCCAGCTAAATTGCCCT
64 TGGACAGTCATGCAAAACTACCCAGCCAAATTTCCCT
* * * * ** *
31921584 GCCAATATTTGATTGTATGCAAAATTAAGAGGAAATTTCTATAGGCGTTCAAATTAGGACAAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATA-AAGTTCAAATTAGGACGAAAT
* * * ***
31921649 GGACTGTCAGGCCAAACTACCCAGCCAAACAACCCT
65 GGACAGTCATGCAAAACTACCCAGCCAAATTTCCCT
* * ** * * * *
31921685 TCCAATATTTGATTGAATAAAAAATTAAGAAGTCATTTCTAT-AAGTATTATAATTGGGATGAAA
1 GCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAAGT-TCA-AATTAGGACGAAA
** * *
31921749 TGGACTCTCATGCCAAACTACCCTGCCAAA
64 TGGACAGTCATGCAAAACTACCCAGCCAAA
31921779 ATTGATTGAA
Statistics
Matches: 326, Mismatches: 56, Indels: 28
0.80 0.14 0.07
Matches are distributed among these distances:
98 1 0.00
99 5 0.02
100 80 0.25
101 236 0.72
102 4 0.01
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.27
Consensus pattern (100 bp):
GCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAAGTTCAAATTAGGACGAAATG
GACAGTCATGCAAAACTACCCAGCCAAATTTCCCT
Found at i:31921827 original size:87 final size:87
Alignment explanation
Indices: 31921672--31921865 Score: 219
Period size: 87 Copynumber: 2.2 Consensus size: 87
31921662 AAACTACCCA
* * * * * *
31921672 GCCAAACAACCCTTCCAATATTTGATTGAATAAAAAATTAAGAAGTCATTTCTATAAGTATTATA
1 GCCAAACTACCCTGCCAA-AATTGATTGAACAAAAAATTAAGAAGACATTTCTATAAGCATTATA
* **
31921737 ATTGGGATGAAATGGACTCTCAT
65 ATTGGGACGAAATGGACAATCAT
** * *
31921760 GCCAAACTACCCTGCCAAAATTGATTGAACGCAAATTTAAGAGGACATTTCTATAAGCATTCA-A
1 GCCAAACTACCCTGCCAAAATTGATTGAACAAAAAATTAAGAAGACATTTCTATAAGCATT-ATA
*
31921824 ATTGGTACGAAATGGACAATCAT
65 ATTGGGACGAAATGGACAATCAT
* *
31921847 ACCAAACTACCCAGCCAAA
1 GCCAAACTACCCTGCCAAA
31921866 CTGCCCTGCC
Statistics
Matches: 89, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
87 72 0.81
88 17 0.19
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.26
Consensus pattern (87 bp):
GCCAAACTACCCTGCCAAAATTGATTGAACAAAAAATTAAGAAGACATTTCTATAAGCATTATAA
TTGGGACGAAATGGACAATCAT
Found at i:31921937 original size:101 final size:101
Alignment explanation
Indices: 31921760--31922066 Score: 375
Period size: 101 Copynumber: 3.0 Consensus size: 101
31921750 GGACTCTCAT
* * *
31921760 GCCAAACTACCCTGCCAAAA-TTGATTGAACGCAAATTTAAGAGGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* ** *
31921824 ATTGGTACGAAATGGACAATCATACCAAACTACCCA
66 ATTGGGACGAAATGGACTGTCATGCCAAACTACCCA
* * * *
31921860 GCCAAACTGCCCTGCCAATATTTGATTGAATGTAAAATTAAGAGGATATTTCTATAGGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* ***
31921925 ATTGGGAAGAAATGGACTGTCATGCCAAACTATTGA
66 ATTGGGACGAAATGGACTGTCATGCCAAACTACCCA
* ** * * **
31921961 GCCAAACAGCCCTGCCAATGTTTGATTAAATGCAAAATTAAGAAGTTATTTCTATAAGCATT-AT
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA-
* *
31922025 ACTTGGGACGAAATAGACTGTCATGCCAAACTACCCA
65 AATTGGGACGAAATGGACTGTCATGCCAAACTACCCA
31922062 GCCAA
1 GCCAA
31922067 TATTTGATTG
Statistics
Matches: 177, Mismatches: 28, Indels: 3
0.85 0.13 0.01
Matches are distributed among these distances:
100 19 0.11
101 158 0.89
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (101 bp):
GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
ATTGGGACGAAATGGACTGTCATGCCAAACTACCCA
Found at i:31922241 original size:87 final size:86
Alignment explanation
Indices: 31921982--31922242 Score: 245
Period size: 87 Copynumber: 3.0 Consensus size: 86
31921972 CTGCCAATGT
* ** *
31921982 TTGATTAAATGCAAAATTAAGAAGTTATTTCTATAAGCATTATACTTGGGACGAAATAGACTGTC
1 TTGATTGAATGCAAAATTAA-AAGGCATTTCTATAAGCATTATAATTGGGACGAAATAGACTGTC
*
31922047 ATGCCAAACTACCC-AGCCAATAT
65 ATGCCAAACT-CCCAAGCCAA-AA
* ** * * * * * *
31922070 TTGATTGAATGCAAAATTAAAAGGACCTTTCTATAAATATTCTAATTTGTACAAAATGGATTGTC
1 TTGATTGAATGCAAAATTAAAAGG-CATTTCTATAAGCATTATAATTGGGACGAAATAGACTGTC
** ** *
31922135 ATGAAAAACTTTCATGCCAAAA
65 ATGCCAAACTCCCAAGCCAAAA
* * * **
31922157 TTGATTGAATGAAAAATTAAAATGGCATTTTTATAAGCATTAAAATTGGGACGAAATTTACTGTC
1 TTGATTGAATGCAAAATTAAAA-GGCATTTCTATAAGCATTATAATTGGGACGAAATAGACTGTC
*
31922222 AAGCCAAACTCCCAAGCCAAA
65 ATGCCAAACTCCCAAGCCAAA
31922243 CTACCCTACC
Statistics
Matches: 132, Mismatches: 38, Indels: 7
0.75 0.21 0.04
Matches are distributed among these distances:
87 69 0.52
88 63 0.48
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.30
Consensus pattern (86 bp):
TTGATTGAATGCAAAATTAAAAGGCATTTCTATAAGCATTATAATTGGGACGAAATAGACTGTCA
TGCCAAACTCCCAAGCCAAAA
Found at i:31922418 original size:101 final size:101
Alignment explanation
Indices: 31922149--31924395 Score: 1372
Period size: 101 Copynumber: 22.8 Consensus size: 101
31922139 AAAACTTTCA
* * * *
31922149 TGCCAAAA-TTGATTGAATGAAAAATTAAAATGG-CATTTTTATAAGCATTAAAATTGGGACGAA
1 TGCCAAAATTTGATTGAATGCAAAATTAAGA-GGACATTTCTATAAGCATTCAAATTGGGACGAA
** * *
31922212 ATTTACTGTCAAGCCAAACT-CCCAAGCCAAACTACCC
65 ATGGACTGTCATGCCAAACTACCC-AGCCAAACAACCC
* * * *
31922249 TACCAATATTTGATTGAATG-TAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGATGAAA
1 TGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
31922313 TGGACTGTCATGCCAAACTACCCAGCCAAACAACCC
66 TGGACTGTCATGCCAAACTACCCAGCCAAACAACCC
*** * * *
31922349 TGCCGGTATTTGATTGAATGCAAAATTAAGAGGATATTTCTATAAGCATTCAAATTGAGACAAAA
1 TGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
* * ** *
31922414 TGGACTGTCATGCCAAGCTACCCAGCCATACTGCCT
66 TGGACTGTCATGCCAAACTACCCAGCCAAACAACCC
* * * * * *
31922450 TGCCAAAATTTGATTGAATTCAAAATTAAGAGAATATTTTTATAAACAATCAAATTGGGAC-AAA
1 TGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
*
31922514 TGGACTGTTATGCCAAACT-----G--------CCC
66 TGGACTGTCATGCCAAACTACCCAGCCAAACAACCC
* * * * * *
31922537 TTCCAAAATTTGATGGAATGCAAGATTAAGAAGTCATTTCTATAAGCATTCAAATTAGGACGAAA
1 TGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
* ***
31922602 TGGACTATCATGTTGAACTACCCAG-----------
66 TGGACTGTCATGCCAAACTACCCAGCCAAACAACCC
* * *
31922627 -G-CAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGTATTCAAATTGGGTCGAAA
1 TGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
* * * * **
31922690 TGTACTGTAATGTCAAACTACCCAGTCAAACTGCCC
66 TGGACTGTCATGCCAAACTACCCAGCCAAACAACCC
* * * * * *
31922726 TGCCAAAATTAGATTGAATGTAAAATTAAGAAGACATTTGTATAAGCATTAAAATTGGGATGAAA
1 TGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
* * * * *
31922791 TTGACTGTCATGCCAAACTACCTAGCAAAACTGA-CT
66 TGGACTGTCATGCCAAACTACCCAGCCAAAC-AACCC
* * * * *
31922827 TGCCAAAATTTGATTGAATGTAAAATTAAGAAGACATTTGTATAAGCATTAAAATTGGGATGAAA
1 TGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
* * * * *
31922892 TTGACTGTCATGCCAAACTACCTAGCAAAACTGA-CT
66 TGGACTGTCATGCCAAACTACCCAGCCAAAC-AACCC
* *
31922928 TGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTAAAATTGGGACGAAA
1 TGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
* ** * *
31922993 TGTACTGTCATGGGAACCTACCCAGCCAAACAACCA
66 TGGACTGTCATGCCAAACTACCCAGCCAAACAACCC
* * * ***
31923029 TACCAAAA-TTGATGGAATGC-AAATTTA-A-GACATTTCTATATTTATTCAAATTGGGACGAAA
1 TGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
* * *
31923090 TTGAC--T--TG-C--A-T-----GTCAAACAGCCC
66 TGGACTGTCATGCCAAACTACCCAGCCAAACAACCC
* *
31923113 TGCCAAAATTTGATTGAATGCAAAATTAAGTA-GACATTTCTATAAGGATTCAAATTGGGATGAA
1 TGCCAAAATTTGATTGAATGCAAAATTAAG-AGGACATTTCTATAAGCATTCAAATTGGGACGAA
* * * ***
31923177 ATGGACTGTTATGCCAAACTACCCAACCAATCTGTCC
65 ATGGACTGTCATGCCAAACTACCCAGCCAAACAACCC
* * *
31923214 TGCCAAAATTTGATTGGATTCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAA
1 TGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
* * ***
31923279 TGTACTGTCATGCCAAACTACGCAGCCAAATTGCCC
66 TGGACTGTCATGCCAAACTACCCAGCCAAACAACCC
** * * ** * ** * *
31923315 TATCGGGAGAAAATGGACAGTCATGTC-AAATTACCA--A-A---CCA-AACTGCCTTGCCAAAA
1 --T-GCCA-AAATTTGATTG-AATG-CAAAATTAAGAGGACATTTCTATAA--GCATT--C-AAA
* * * * * * ** ** ** **
31923372 TT-GGATTG-AATGCAAAAT-TAAGAGGACATTTCTA-TAAG-CATTCAA-AT
55 TTGGGA-CGAAATG--GACTGT--CATGCCA-AACTACCCAGCCAAACAACCC
* * * * * * * * **
31923419 TGAGACGAAA-TTGACTGTCATGCCAAACTACCCAGA-TAAACTGCCCTTCTA-AA--ATT-TGA
1 T--GCCAAAATTTGATTG-AATGCAAAATTA---AGAGGACA-T----TTCTATAAGCATTCAAA
* * * * ** * * * *
31923478 TT-GAACTCAAA---A-T-T-A----AAAGTA--GATTTC-TATAAGCA
55 TTGGGAC-GAAATGGACTGTCATGCCAAACTACCCA-GCCAAACAACCC
** * * * *** **
31923513 T--TTAAATTTAATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTAAAAAAAA
1 TGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
* *
31923576 TGGACTGTCATGCTAAACTACCCAGCCAAA-ATTCCC
66 TGGACTGTCATGCCAAACTACCCAGCCAAACA-ACCC
* *
31923612 TTCCAAAATTGGATTGAATGCAAAATTAA-AGGACATTTCTATAAGCATTCAAATTGGGACGAAA
1 TGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
* * **
31923676 TGGACTGTCTTGCCAAACTACCTAGCCAAACTGCCC
66 TGGACTGTCATGCCAAACTACCCAGCCAAACAACCC
** * ** * *
31923712 TATCAAAA-TTGATTGAATGCAAAGTTAAGAAAACATTTCTATAAGCATTAAAATTGGGATGAAA
1 TGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
* * * * ***
31923776 TAGACTGTCATGCCAAACTACCAAACTAAATTGCCC
66 TGGACTGTCATGCCAAACTACCCAGCCAAACAACCC
* * * ** * *
31923812 TGCCAAAA-TTGATTGAATGCAAAATTATGAGAACATTTTTATAAAAATTAAAATTGGGACAAAA
1 TGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
* ** * * ** *
31923876 TGGACTGTTACACTAAACTACCCAACCAAACTGCCT
66 TGGACTGTCATGCCAAACTACCCAGCCAAACAACCC
* * * * *
31923912 TTCCAAAATTTGATTGAATGCAAAATTGAGAGGACATTTATATAAGCATACAAATTGGGACAAAA
1 TGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
* * **
31923977 TGGACTGTCATGCCAAACTACCCAGCAAAACTATTC
66 TGGACTGTCATGCCAAACTACCCAGCCAAACAACCC
* * * *
31924013 TGCCAAAA-TTGATTGAATGCAAAATTAAGAGGAAACTTCCATAAGCATTCAAATTGAGA-GAAA
1 TGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG-AA
* * **
31924076 ATGGACTGTCATGCCAAACTATCCAACCAAACTGCCC
65 ATGGACTGTCATGCCAAACTACCCAGCCAAACAACCC
* * * * * * *
31924113 TACCAAAATTTGATTGAATGCAAAATTTAGAGGACACTGCTTTAAGCATTTAAATTGGGA-TAGA
1 TGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGA-A
* * * ****
31924177 ATAGACTATCATGCCAAACTACCCAGCAAAATTGGCC
65 ATGGACTGTCATGCCAAACTACCCAGCCAAACAACCC
*
31924214 TGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAAA
1 TGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
* * **
31924278 TTGACTGTCATGCCAAACGACCCAGCCAAACTGCCC
66 TGGACTGTCATGCCAAACTACCCAGCCAAACAACCC
* * *
31924314 AGACAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTTGGACGAAA
1 TGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
* *
31924379 TGGACTGTTATACCAAA
66 TGGACTGTCATGCCAAA
31924396 TTGCCCTAGC
Statistics
Matches: 1702, Mismatches: 334, Indels: 221
0.75 0.15 0.10
Matches are distributed among these distances:
83 5 0.00
84 18 0.01
85 11 0.01
86 9 0.01
87 61 0.04
88 130 0.08
89 1 0.00
90 14 0.01
91 6 0.00
92 4 0.00
93 10 0.01
94 3 0.00
95 3 0.00
96 1 0.00
97 37 0.02
98 4 0.00
99 32 0.02
100 505 0.30
101 776 0.46
102 5 0.00
103 11 0.01
104 11 0.01
105 12 0.01
106 21 0.01
107 6 0.00
110 2 0.00
114 4 0.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (101 bp):
TGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
TGGACTGTCATGCCAAACTACCCAGCCAAACAACCC
Found at i:31922590 original size:87 final size:88
Alignment explanation
Indices: 31922438--31922708 Score: 278
Period size: 88 Copynumber: 3.1 Consensus size: 88
31922428 AAGCTACCCA
* * * * *
31922438 GCCATACTG-CCTTGCCAAAATTTGATTGAATTCAAAATTAAGAGAAT-ATTTTTATAAACAATC
1 GCCAAACTGCCCTT-CCAAAATTTGATTGAATGCAAAATTAAGA-AGTCATTTTTATAAGCATTC
*
31922501 AAATTGGGAC-AAATGGACTGTTAT
64 AAATTGGGACGAAATGGACTGTAAT
* * *
31922525 GCCAAACTGCCCTTCCAAAATTTGATGGAATGCAAGATTAAGAAGTCATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTTCCAAAATTTGATTGAATGCAAAATTAAGAAGTCATTTTTATAAGCATTCAA
* * *
31922590 ATTAGGACGAAATGGACTATCAT
66 ATTGGGACGAAATGGACTGTAAT
*** * *** * * *
31922613 GTTGAACTACCCAGGCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGTATTCAA
1 GCCAAACTGCCCTTCCAAAATTTGATTGAATGCAAAATTAAGAAGTCATTTTTATAAGCATTCAA
* *
31922678 ATTGGGTCGAAATGTACTGTAAT
66 ATTGGGACGAAATGGACTGTAAT
*
31922701 GTCAAACT
1 GCCAAACT
31922709 ACCCAGTCAA
Statistics
Matches: 150, Mismatches: 31, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
86 2 0.01
87 56 0.37
88 92 0.61
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (88 bp):
GCCAAACTGCCCTTCCAAAATTTGATTGAATGCAAAATTAAGAAGTCATTTTTATAAGCATTCAA
ATTGGGACGAAATGGACTGTAAT
Found at i:31923195 original size:88 final size:84
Alignment explanation
Indices: 31923017--31923183 Score: 199
Period size: 88 Copynumber: 1.9 Consensus size: 84
31923007 AACCTACCCA
* ***
31923017 GCCAAACAACCATACCAAAATTGATGGAATGCAAATTTAAGACATTTCTATATTTATTCAAATTG
1 GCCAAACAACCATACCAAAATTGATGGAATGCAAATTAAAGACATTTCTATAAGGATTCAAATTG
*
31923082 GGACGAAATTGACTTGCAT
66 GGACGAAATGGACTTGCAT
* * * * *
31923101 GTCAAACAGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGTAGACATTTCTATAAGGATTCAA
1 GCCAAACAACCATACCAAAA-TTGATGGAATGC-AAATTAA--AGACATTTCTATAAGGATTCAA
*
31923166 ATTGGGATGAAATGGACT
62 ATTGGGACGAAATGGACT
31923184 GTTATGCCAA
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
84 16 0.24
85 11 0.16
86 6 0.09
88 35 0.51
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.29
Consensus pattern (84 bp):
GCCAAACAACCATACCAAAATTGATGGAATGCAAATTAAAGACATTTCTATAAGGATTCAAATTG
GGACGAAATGGACTTGCAT
Found at i:31923446 original size:150 final size:150
Alignment explanation
Indices: 31923175--31923449 Score: 421
Period size: 150 Copynumber: 1.8 Consensus size: 150
31923165 AATTGGGATG
* * * * * * *
31923175 AAATGGACTGTTATGCCAAACTACCCAACCAATCTGTCCTGCCAAAATTTGATTGGATTCAAAAT
1 AAATGGACAGTCATGCCAAACTACCAAACCAAACTGTCCTGCCAAAATTGGATTGAATGCAAAAT
31923240 TAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATGTACTGTCATGCCAAACTACGCAGC
66 TAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATGTACTGTCATGCCAAACTACGCAGC
31923305 CAAATTGCCCTATCGGGAGA
131 CAAATTGCCCTATCGGGAGA
* *
31923325 AAATGGACAGTCATGTCAAATTACCAAACCAAACTG-CCTTGCCAAAATTGGATTGAATGCAAAA
1 AAATGGACAGTCATGCCAAACTACCAAACCAAACTGTCC-TGCCAAAATTGGATTGAATGCAAAA
31923389 TTAAGAGGACATTTCTATAAGCATTCAAATT-GAGACGAAAT-TGACTGTCATGCCAAACTAC
65 TTAAGAGGACATTTCTATAAGCATTCAAATTAG-GACGAAATGT-ACTGTCATGCCAAACTAC
31923450 CCAGATAAAC
Statistics
Matches: 113, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
149 4 0.04
150 109 0.96
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (150 bp):
AAATGGACAGTCATGCCAAACTACCAAACCAAACTGTCCTGCCAAAATTGGATTGAATGCAAAAT
TAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATGTACTGTCATGCCAAACTACGCAGC
CAAATTGCCCTATCGGGAGA
Found at i:31923527 original size:46 final size:46
Alignment explanation
Indices: 31923470--31923569 Score: 139
Period size: 46 Copynumber: 2.2 Consensus size: 46
31923460 TGCCCTTCTA
* * * *
31923470 AAATTTGATTGAACT-CAAAATTAAAAGTAGATTTCTATAAGCATTT
1 AAATTTAATTGAA-TGCAAAATTAAAAGAAAATTTCTATAAGCATTC
*
31923516 AAATTTAATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTC
1 AAATTTAATTGAATGCAAAATTAAAAGAAAATTTCTATAAGCATTC
31923562 AAATTTAA
1 AAATTTAA
31923570 AAAAAATGGA
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
45 1 0.02
46 47 0.98
ACGTcount: A:0.47, C:0.08, G:0.10, T:0.35
Consensus pattern (46 bp):
AAATTTAATTGAATGCAAAATTAAAAGAAAATTTCTATAAGCATTC
Found at i:31923582 original size:147 final size:146
Alignment explanation
Indices: 31923376--31923666 Score: 404
Period size: 147 Copynumber: 2.0 Consensus size: 146
31923366 CCAAAATTGG
* * * ** *
31923376 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGAGACGAAATTGACTGTCATG
1 ATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTGAAAAAAAATGGACTGTCATG
* * * * * *
31923441 CCAAACTACCCAGATAAACTGCCCTTCTAAAATTTGATTGAACT-CAAAATTAAAAGTAGATTTC
66 CCAAACTACCCAGACAAAATGCCCTTCCAAAATTGGATTGAA-TGCAAAATT-AAAGGACATTTC
*
31923505 TATAAGCATTTAAATTTA
129 TATAAGCATTCAAATTTA
*
31923523 ATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTAAAAAAAATGGACTGTCATG
1 ATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTGAAAAAAAATGGACTGTCATG
* * *
31923588 CTAAACTACCCAGCCAAAATTCCCTTCCAAAATTGGATTGAATGCAAAATTAAAGGACATTTCTA
66 CCAAACTACCCAGACAAAATGCCCTTCCAAAATTGGATTGAATGCAAAATTAAAGGACATTTCTA
31923653 TAAGCATTCAAATT
131 TAAGCATTCAAATT
31923667 GGGACGAAAT
Statistics
Matches: 126, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
146 26 0.21
147 100 0.79
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.30
Consensus pattern (146 bp):
ATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTGAAAAAAAATGGACTGTCATG
CCAAACTACCCAGACAAAATGCCCTTCCAAAATTGGATTGAATGCAAAATTAAAGGACATTTCTA
TAAGCATTCAAATTTA
Found at i:31923719 original size:100 final size:100
Alignment explanation
Indices: 31923523--31924395 Score: 998
Period size: 100 Copynumber: 8.7 Consensus size: 100
31923513 TTTAAATTTA
* * *** **
31923523 ATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTAAAAAAAATGGACTGTCATG
1 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
* * * *
31923588 CTAAACTACCCAGCCAAAATTCCCTTCCAAAATTGG
66 CCAAACTACCCAGCCAAACTGCCCTACCAAAATT-G
*
31923624 ATTGAATGCAAAATTAA-AGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCTTG
1 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
* *
31923688 CCAAACTACCTAGCCAAACTGCCCTATCAAAATTG
66 CCAAACTACCCAGCCAAACTGCCCTACCAAAATTG
* ** * * *
31923723 ATTGAATGCAAAGTTAAGAAAACATTTCTATAAGCATTAAAATTGGGATGAAATAGACTGTCATG
1 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
* * * * *
31923788 CCAAACTACCAAACTAAATTGCCCTGCCAAAATTG
66 CCAAACTACCCAGCCAAACTGCCCTACCAAAATTG
* * * ** * * * **
31923823 ATTGAATGCAAAATTATGAGAACATTTTTATAAAAATTAAAATTGGGACAAAATGGACTGTTACA
1 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
* * * *
31923888 CTAAACTACCCAACCAAACTGCCTTTCCAAAATTTG
66 CCAAACTACCCAGCCAAACTGCCCTACCAAAA-TTG
* * * *
31923924 ATTGAATGCAAAATTGAGAGGACATTTATATAAGCATACAAATTGGGACAAAATGGACTGTCATG
1 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
* *** *
31923989 CCAAACTACCCAGCAAAACTATTCTGCCAAAATTG
66 CCAAACTACCCAGCCAAACTGCCCTACCAAAATTG
* * * *
31924024 ATTGAATGCAAAATTAAGAGGAAACTTCCATAAGCATTCAAATTGAGA-GAAAATGGACTGTCAT
1 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG-AAATGGACTGTCAT
* *
31924088 GCCAAACTATCCAACCAAACTGCCCTACCAAAATTTG
65 GCCAAACTACCCAGCCAAACTGCCCTACCAAAA-TTG
* * * * * * * *
31924125 ATTGAATGCAAAATTTAGAGGACACTGCTTTAAGCATTTAAATTGGGA-TAGAATAGACTATCAT
1 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGA-AATGGACTGTCAT
* * * *
31924189 GCCAAACTACCCAGCAAAATTGGCCTGCCAAAATTG
65 GCCAAACTACCCAGCCAAACTGCCCTACCAAAATTG
* *
31924225 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAAATTGACTGTCATG
1 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
* *
31924290 CCAAACGACCCAGCCAAACTGCCC-AGACAAAATTTG
66 CCAAACTACCCAGCCAAACTGCCCTA-CCAAAA-TTG
* * *
31924326 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTTGGACGAAATGGACTGTTATA
1 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
31924391 CCAAA
66 CCAAA
31924396 TTGCCCTAGC
Statistics
Matches: 649, Mismatches: 115, Indels: 16
0.83 0.15 0.02
Matches are distributed among these distances:
99 17 0.03
100 383 0.59
101 249 0.38
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.26
Consensus pattern (100 bp):
ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
CCAAACTACCCAGCCAAACTGCCCTACCAAAATTG
Found at i:31935403 original size:47 final size:47
Alignment explanation
Indices: 31935344--31935763 Score: 723
Period size: 47 Copynumber: 8.9 Consensus size: 47
31935334 TAGTATGGCG
*
31935344 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCC
*
31935391 TAATGGCCGATGTAATGAATGTGAAAGTGTACATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCC
31935438 TAATGGCCGATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCC
31935485 TAATGGCCGATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCC
31935532 TAATGGCCGATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCC
31935579 TAATGGCCGATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCC
*
31935626 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCC
* * *
31935673 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCC
* * * * * * *
31935720 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTACATATGTGATAAG
31935764 TCCCGAAGGG
Statistics
Matches: 359, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 359 1.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCC
Found at i:31935940 original size:37 final size:37
Alignment explanation
Indices: 31935882--31935960 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
31935872 CCGAGCTCTA
* * * *
31935882 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
*
31935919 AAGACCCGATAACTTCATGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
31935956 AAGAC
1 AAGAC
31935961 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
Found at i:31943372 original size:42 final size:42
Alignment explanation
Indices: 31943311--31943410 Score: 173
Period size: 42 Copynumber: 2.4 Consensus size: 42
31943301 GGCTCAAATA
*
31943311 TTGATCAGAATGGGACATGAAGTGATTAGAGCAACTTGTATC
1 TTGATCAGAATGGGGCATGAAGTGATTAGAGCAACTTGTATC
*
31943353 TTGATCAGAATGGGGCATGAAGTGATTAGAGCAGCTTGTATC
1 TTGATCAGAATGGGGCATGAAGTGATTAGAGCAACTTGTATC
*
31943395 TTGATCAGATTGGGGC
1 TTGATCAGAATGGGGC
31943411 GTGTAGCAAT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.29, C:0.12, G:0.30, T:0.29
Consensus pattern (42 bp):
TTGATCAGAATGGGGCATGAAGTGATTAGAGCAACTTGTATC
Found at i:31944876 original size:222 final size:221
Alignment explanation
Indices: 31944609--31945206 Score: 955
Period size: 222 Copynumber: 2.7 Consensus size: 221
31944599 CATCAGGTCT
* *
31944609 TATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTATAA
1 TATCT-CCTGAGATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAG
* * *
31944674 CGGAGCAGATTAAAGCTAGTAATCCTATCTCCTTGAGATTACAGTGGAGCGGATTAAAATAAATG
65 CGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAAG
* *
31944739 ATCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAAAATTTTAGATCTTATATCCCTAAGATT
130 ATCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAAAATTTCAGATCTGATATCCCTAAGATT
31944804 ACAACGGAGCAGATTGAAGGTGAATCC
195 ACAACGGAGCAGATTGAAGGTGAATCC
*
31944831 TATCTCACTGAGATCACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAG
1 TATCTC-CTGAGATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAG
* *
31944896 CGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTATAGTGGAGCGGATTAAAATAAAAG
65 CGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAAG
* * * * * *
31944961 ATCTTATCTCCCTAAGATTACAGTGGAATAGACCGAAGAATTTCAGATCTGATCTTCCTGAGATT
130 ATCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAAAATTTCAGATCTGATATCCCTAAGATT
*
31945026 ACAGCGGAGCAGATTGAAGGTGAATCC
195 ACAACGGAGCAGATTGAAGGTGAATCC
* * *
31945053 TATCTCCTTGAGATTACAGTGGAATAGACCGAAGAATTTTAGATCTTATTTCCCTGATATTACAG
1 TATCTCC-TGAGATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAG
*
31945118 CGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGG
65 CGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAAG
*
31945183 ATCTTATCTCTCTGA-AGTTACAGT
130 ATCTTATCTCCCTGAGA-TTACAGT
31945207 AGAGTAGATC
Statistics
Matches: 347, Mismatches: 26, Indels: 6
0.92 0.07 0.02
Matches are distributed among these distances:
221 3 0.01
222 344 0.99
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (221 bp):
TATCTCCTGAGATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGC
GGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAAGA
TCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAAAATTTCAGATCTGATATCCCTAAGATTA
CAACGGAGCAGATTGAAGGTGAATCC
Found at i:31944970 original size:134 final size:132
Alignment explanation
Indices: 31944464--31945075 Score: 442
Period size: 134 Copynumber: 4.6 Consensus size: 132
31944454 ACAGATCAGT
* * * *
31944464 GAAGAATTTCAGATCTTATCTCCCTAAGATTACAGCGAAGCATATTGAAGCTAGTAATCCTATCT
1 GAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCT
* * * * * * *
31944529 CCCTGATATTACAGTGGAGCGGTTTAAAATAAAGGATCTTATCTCTCTGA-AGTTACAGTAGAGT
66 CCCTGAGATTACAGTGGAGCAGATTAAAATAAA-AATCCTATCTC-CTGAGA-TTACAGTGGAAT
*
31944593 AGATC
128 AGACC
* * * * ** * * *
31944598 ---GCA--TCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAG-AATTTCAGATCTTA
1 GAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTA-GT-A-ATCCTA
* ** * **
31944657 TCTCCCTGAGATTATAACGGAGCAGATTAAAGCTAGTAATCCTATCTCCTTGAGATTACAGTGGA
63 TCTCCCTGAGATTACAGTGGAGCAGATTAAA-ATAAAAATCCTATCTCC-TGAGATTACAGTGGA
*** *
31944722 GCGGA-T
126 ATAGACC
* ** * * *** ** ** *
31944728 TAA-AA-TAAATGATCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAAAATTTTAGATCTTA
1 GAAGAATTTCA-GATCTTATCTCCCTGAGATTACAGCGGAGTAGA-TTGAAGCTAGTA-ATCCTA
* * ** ** * *
31944791 TATCCCTAAGATTACAACGGAGCAGATTGAAGGT--GAATCCTATCTCACTGAGATCACAGTGGA
63 TCTCCCTGAGATTACAGTGGAGCAGATT-AAAATAAAAATCCTATCTC-CTGAGATTACAGTGGA
31944854 ATAGACC
126 ATAGACC
31944861 GAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCT
1 GAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCT
* * * *
31944926 CCCTGAGATTATAGTGGAGCGGATTAAAATAAAAGATCTTATCTCCCTAAGATTACAGTGGAATA
66 CCCTGAGATTACAGTGGAGCAGATTAAAATAAAA-ATCCTATCT-CCTGAGATTACAGTGGAATA
31944991 GACC
129 GACC
* * * *
31944995 GAAGAATTTCAGATCTGATCTTCCTGAGATTACAGCGGAGCAGATTGAAGGT-G-AATCCTATCT
1 GAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCT
*
31945058 CCTTGAGATTACAGTGGA
66 CCCTGAGATTACAGTGGA
31945076 ATAGACCGAA
Statistics
Matches: 377, Mismatches: 79, Indels: 46
0.75 0.16 0.09
Matches are distributed among these distances:
128 1 0.00
129 34 0.09
130 2 0.01
131 59 0.16
132 84 0.22
133 11 0.03
134 176 0.47
135 10 0.03
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (132 bp):
GAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCT
CCCTGAGATTACAGTGGAGCAGATTAAAATAAAAATCCTATCTCCTGAGATTACAGTGGAATAGA
CC
Found at i:31945097 original size:134 final size:134
Alignment explanation
Indices: 31944831--31945117 Score: 371
Period size: 134 Copynumber: 2.1 Consensus size: 134
31944821 AGGTGAATCC
* * *
31944831 TATCTCACTGAGATCACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAG
1 TATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCAGATCTGATCTCCCTGAGATTACAG
* * * * **
31944896 CGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTATAGTGGAGCGGATTAAAATAAAAG
66 CGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAACAGACGAAAATAAAAG
31944961 ATCT
131 ATCT
* *
31944965 TATCTCCCTAAGATTACAGTGGAATAGACCGAAGAATTTCAGATCTGATCTTCCTGAGATTACAG
1 TATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCAGATCTGATCTCCCTGAGATTACAG
* * * ***
31945030 CGGAGCAGATTGAAGGT-G-AATCCTATCTCCTTGAGATTACAGTGGAATAGACCGAAGAATTTT
66 CGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAACAGA-CGAA-AATAAA
31945093 AGATCT
129 AGATCT
* *
31945099 TATTTCCCTGATATTACAG
1 TATCTCCCTGAGATTACAG
31945118 CGGAGCAGAT
Statistics
Matches: 131, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
132 28 0.21
133 3 0.02
134 100 0.76
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (134 bp):
TATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCAGATCTGATCTCCCTGAGATTACAG
CGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAACAGACGAAAATAAAAG
ATCT
Found at i:31945186 original size:88 final size:88
Alignment explanation
Indices: 31944475--31945205 Score: 344
Period size: 88 Copynumber: 8.3 Consensus size: 88
31944465 AAGAATTTCA
* * * *
31944475 GATCTTATCTCCCTAAGATTACAGCGAAGCATATTGAAGCTAGTAATCCTATCTCCCTGATATTA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
* *
31944540 CAGTGGAGCGGTTTAAAATAAAG
66 CAGTGGAGCAGATTAAAATAAAG
* ** * * * * * *
31944563 GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC-AG--GTCTTATCTCCCTGAGATT
1 GATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
** ** **
31944624 ACAGTGGAATAGACCGAAGAATTTCA-
65 ACAGTGGAGCAGA-TTAA-AA-TAAAG
* * * *
31944650 GATCTTATCTCCCTGAGATTATAACGGAGCAGATTAAAGCTAGTAATCCTATCTCCTTGAGATTA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
* *
31944715 CAGTGGAGCGGATTAAAATAAAT
66 CAGTGGAGCAGATTAAAATAAAG
* ** *** ** ** * * *
31944738 GATCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAAAATTTTAGATCTTATATCCCTAAGAT
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGA-TTGAAGCTAGTA-ATCCTATCTCCCTGAGAT
** **
31944803 TACAACGGAGCAGATTGAAGGT---G
64 TACAGTGGAGCAGATT-AAAATAAAG
* * * * * ** ** * * *
31944826 AATCCTATCTCACTGAGATCACAGTGGAATAGACCGAAG-AATTTCAGATCTTATCTCCCTGAGA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTA-GT-A-ATCCTATCTCCCTGAGA
* * **
31944890 TTACAGCGGAGTAGATTGAAGCT--AG
63 TTACAGTGGAGCAGATT-AAAATAAAG
* * * * * ** ** * *
31944915 TAATCCTATCTCCCTGAGATTATAGTGGAGCGGATT-AAAATAAAAGATCTTATCTCCCTAAGAT
1 -GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTA-ATCCTATCTCCCTGAGAT
** ** **
31944979 TACAGTGGAATAGACCGAAGAATTTCA-
64 TACAGTGGAGCAGA-TTAA-AA-TAAAG
* * * *
31945006 GATCTGATCTTCCTGAGATTACAGCGGAGCAGATTGAAGGT-G-AATCCTATCTCCTTGAGATTA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
** ** **
31945069 CAGTGGAATAGACCGAAGAATTTTA-
66 CAGTGGAGCAGA-TTAA-AA-TAAAG
* *
31945094 GATCTTATTTCCCTGATATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
*
31945159 CAGTGGAGCGGATTAAAATAAAG
66 CAGTGGAGCAGATTAAAATAAAG
*
31945182 GATCTTATCTCTCTGA-AGTTACAG
1 GATCTTATCTCCCTGAGA-TTACAG
31945206 TAGAGTAGAT
Statistics
Matches: 492, Mismatches: 124, Indels: 54
0.73 0.19 0.08
Matches are distributed among these distances:
85 25 0.05
86 2 0.00
87 43 0.09
88 261 0.53
89 15 0.03
90 139 0.28
91 6 0.01
92 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (88 bp):
GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
CAGTGGAGCAGATTAAAATAAAG
Found at i:31945343 original size:46 final size:46
Alignment explanation
Indices: 31945229--31945331 Score: 138
Period size: 46 Copynumber: 2.3 Consensus size: 46
31945219 ATTAGGTCTA
* * *
31945229 ATCTCCCTAAGATTACAGTGGAATAGACCAAAGAATTTCAAATCTT
1 ATCTTCCTGAGATTACAGTGGAATAGACCAAAGAATTTCAAACCTT
* **
31945275 ATCTTCCTGAGATTACAGTGGAATAGACCGAAGAATTTCAGGCCTT
1 ATCTTCCTGAGATTACAGTGGAATAGACCAAAGAATTTCAAACCTT
31945321 ATC-TCCT-AGAT
1 ATCTTCCTGAGAT
31945332 AATGTAGTGG
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
44 4 0.08
45 4 0.08
46 43 0.84
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (46 bp):
ATCTTCCTGAGATTACAGTGGAATAGACCAAAGAATTTCAAACCTT
Found at i:31964054 original size:6 final size:6
Alignment explanation
Indices: 31964043--31964069 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
31964033 TAGTAAAGTA
31964043 ATTGGT ATTGGT ATTGGT ATTGGT ATT
1 ATTGGT ATTGGT ATTGGT ATTGGT ATT
31964070 CTAATAGCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.52
Consensus pattern (6 bp):
ATTGGT
Found at i:31964517 original size:22 final size:22
Alignment explanation
Indices: 31964477--31964518 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
31964467 AGAAATCGGC
**
31964477 AGAGAAAAAAAGAGGGAAAAAA
1 AGAGAAAAAAAGAAAGAAAAAA
*
31964499 AGAGAAAAACAGAAAGAAAA
1 AGAGAAAAAAAGAAAGAAAA
31964519 TTTGTATTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.74, C:0.02, G:0.24, T:0.00
Consensus pattern (22 bp):
AGAGAAAAAAAGAAAGAAAAAA
Found at i:31967938 original size:10 final size:10
Alignment explanation
Indices: 31967917--31967999 Score: 52
Period size: 10 Copynumber: 8.4 Consensus size: 10
31967907 AATAAATAAG
31967917 ATTTAA-ATA
1 ATTTAATATA
31967926 ATTTAATATA
1 ATTTAATATA
*
31967936 ATTATACATAAAA
1 ATT-TA-AT-ATA
31967949 TATTTAA-ATA
1 -ATTTAATATA
31967959 ATTTAATATA
1 ATTTAATATA
31967969 A--TAATATA
1 ATTTAATATA
*
31967977 A--AACATATA
1 ATTTA-ATATA
*
31967986 ATTTAATTTA
1 ATTTAATATA
31967996 ATTT
1 ATTT
31968000 TTAAATACGT
Statistics
Matches: 60, Mismatches: 5, Indels: 17
0.73 0.06 0.21
Matches are distributed among these distances:
8 9 0.15
9 18 0.30
10 20 0.33
11 3 0.05
12 3 0.05
13 4 0.07
14 3 0.05
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (10 bp):
ATTTAATATA
Found at i:31968598 original size:14 final size:14
Alignment explanation
Indices: 31968554--31968605 Score: 65
Period size: 14 Copynumber: 3.9 Consensus size: 14
31968544 TTTTTCTTAT
31968554 TTTTTC-TTATTTG
1 TTTTTCTTTATTTG
* *
31968567 -TTTTCCTT-TTTC
1 TTTTTCTTTATTTG
31968579 TTTTTCTTTATTTG
1 TTTTTCTTTATTTG
31968593 TTTTTCTTTATTT
1 TTTTTCTTTATTT
31968606 CCTAATAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
12 8 0.24
13 9 0.27
14 16 0.48
ACGTcount: A:0.06, C:0.12, G:0.04, T:0.79
Consensus pattern (14 bp):
TTTTTCTTTATTTG
Found at i:31968607 original size:35 final size:35
Alignment explanation
Indices: 31968541--31968608 Score: 86
Period size: 35 Copynumber: 1.9 Consensus size: 35
31968531 GCTACCTATG
*
31968541 TTCTTTTTCTTATTTTTTCTTATTTGTTTTCCTTT
1 TTCTTTTTCTTATTTTTTCTTATTTGATTTCCTTT
*
31968576 TTCTTTTTCTTTATTTGTTT-TTCTTT-ATTTCCT
1 TTCTTTTTC-TTATTT-TTTCTTATTTGATTTCCT
31968609 AATAAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 15 0.52
36 11 0.38
37 3 0.10
ACGTcount: A:0.06, C:0.15, G:0.03, T:0.76
Consensus pattern (35 bp):
TTCTTTTTCTTATTTTTTCTTATTTGATTTCCTTT
Found at i:31969796 original size:17 final size:17
Alignment explanation
Indices: 31969776--31969812 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
31969766 AATTTTTGAA
31969776 TTAGTAAATTCTGTGAT
1 TTAGTAAATTCTGTGAT
* *
31969793 TTAGTGAATTTTGTGAT
1 TTAGTAAATTCTGTGAT
31969810 TTA
1 TTA
31969813 AAAAGAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.27, C:0.03, G:0.19, T:0.51
Consensus pattern (17 bp):
TTAGTAAATTCTGTGAT
Found at i:31971070 original size:24 final size:24
Alignment explanation
Indices: 31971043--31971117 Score: 59
Period size: 23 Copynumber: 3.2 Consensus size: 24
31971033 ATGGAAAATT
31971043 GTGAAAAGTAGGTATGGTGTTTCA
1 GTGAAAAGTAGGTATGGTGTTTCA
** ** *
31971067 GTGAAGAA--AGCCATACTGAGTT--
1 GTGAA-AAGTAGGTATGGTG-TTTCA
31971089 GTGAAAAGTAGGTATGGTGTTTCA
1 GTGAAAAGTAGGTATGGTGTTTCA
31971113 GTGAA
1 GTGAA
31971118 GAAAACCATA
Statistics
Matches: 35, Mismatches: 10, Indels: 12
0.61 0.18 0.21
Matches are distributed among these distances:
21 2 0.06
22 7 0.20
23 12 0.34
24 12 0.34
25 2 0.06
ACGTcount: A:0.32, C:0.07, G:0.32, T:0.29
Consensus pattern (24 bp):
GTGAAAAGTAGGTATGGTGTTTCA
Found at i:31971094 original size:46 final size:46
Alignment explanation
Indices: 31971041--31971226 Score: 318
Period size: 46 Copynumber: 4.0 Consensus size: 46
31971031 CCATGGAAAA
*
31971041 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAGCCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
31971087 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
* *
31971133 TTGTGAAAAGTAGGTATGGTATTTCAGTGAAGAAAACCATATTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
* * *
31971179 TTGTGAAAAGTAGGTATGATCTTTCAGTGAAGGAAACCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
31971225 TT
1 TT
31971227 ATAGCATTGT
Statistics
Matches: 133, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 133 1.00
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.30
Consensus pattern (46 bp):
TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
Found at i:31973914 original size:38 final size:38
Alignment explanation
Indices: 31973863--31973938 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
31973853 ACGACCCTGA
*
31973863 CAAAGGTCCATCCAGAATATTTGTCATTGATTTCACCG
1 CAAAGGTCCATCCAGAATATTTGTCATTGAGTTCACCG
31973901 CAAAGGTCCATCCAGAATATTTGTCATTGAGTTCACCG
1 CAAAGGTCCATCCAGAATATTTGTCATTGAGTTCACCG
31973939 TATCCCTATA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (38 bp):
CAAAGGTCCATCCAGAATATTTGTCATTGAGTTCACCG
Found at i:31974954 original size:23 final size:22
Alignment explanation
Indices: 31974922--31974964 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
31974912 TTTGTTTGTC
*
31974922 TTTTTTTTTATTTACTTTTTCAG
1 TTTTTATTTATTTA-TTTTTCAG
31974945 TTTTTATTTATTTATTTTTC
1 TTTTTATTTATTTATTTTTC
31974965 CTTTATTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.77
Consensus pattern (22 bp):
TTTTTATTTATTTATTTTTCAG
Found at i:31974994 original size:24 final size:23
Alignment explanation
Indices: 31974927--31975003 Score: 56
Period size: 24 Copynumber: 3.3 Consensus size: 23
31974917 TTGTCTTTTT
31974927 TTTTATTTACTTTTTCAGTTT-TT-A
1 TTTTATTTA-TTTTTC--TTTATTGA
31974951 -TTTATTTATTTTTCCTTTATTTG-
1 TTTTATTTATTTTT-CTTTA-TTGA
31974974 TTTTATTTATTTGTT-TATTATTGA
1 TTTTATTTATTT-TTCT-TTATTGA
31974998 TTTTAT
1 TTTTAT
31975004 AATATTTTAA
Statistics
Matches: 45, Mismatches: 0, Indels: 16
0.74 0.00 0.26
Matches are distributed among these distances:
21 3 0.07
22 5 0.11
23 15 0.33
24 20 0.44
25 2 0.04
ACGTcount: A:0.17, C:0.05, G:0.05, T:0.73
Consensus pattern (23 bp):
TTTTATTTATTTTTCTTTATTGA
Found at i:31975000 original size:28 final size:28
Alignment explanation
Indices: 31974946--31975000 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
31974936 CTTTTTCAGT
* *
31974946 TTTTATTTATTTATTTTTCCTTTATTTG
1 TTTTATTTATTTATTTTTCATTGATTTG
*
31974974 TTTTATTTATTTGTTTATT-ATTGATTT
1 TTTTATTTATTTATTT-TTCATTGATTT
31975001 TATAATATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 21 0.91
29 2 0.09
ACGTcount: A:0.16, C:0.04, G:0.05, T:0.75
Consensus pattern (28 bp):
TTTTATTTATTTATTTTTCATTGATTTG
Found at i:31975023 original size:13 final size:13
Alignment explanation
Indices: 31975005--31975030 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
31974995 TGATTTTATA
31975005 ATATTTTAAATGT
1 ATATTTTAAATGT
31975018 ATATTTTAAATGT
1 ATATTTTAAATGT
31975031 TTTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (13 bp):
ATATTTTAAATGT
Found at i:31975025 original size:23 final size:23
Alignment explanation
Indices: 31974997--31975141 Score: 82
Period size: 21 Copynumber: 6.8 Consensus size: 23
31974987 TTTATTATTG
*
31974997 ATTTTATAATATTTTAAATGTAT
1 ATTTTATAATATTTTAAATATAT
*
31975020 ATTTTA-AATGTTTTATAATATAT
1 ATTTTATAATATTTTA-AATATAT
* * * *
31975043 -TTTTTTAAAAAATTTACATATAT
1 ATTTTAT-AATATTTTAAATATAT
31975066 ATTTT-TAATA--TT--AT-TAT
1 ATTTTATAATATTTTAAATATAT
* *
31975083 -TTTTA-AAAAATTTAAATAT-T
1 ATTTTATAATATTTTAAATATAT
*
31975103 ATTTTTTAA-ATTTTAAATATA-
1 ATTTTATAATATTTTAAATATAT
* *
31975124 ATTTTTTAATATTATAAA
1 ATTTTATAATATTTTAAA
31975142 ACATTTAAAA
Statistics
Matches: 96, Mismatches: 12, Indels: 29
0.70 0.09 0.21
Matches are distributed among these distances:
16 7 0.07
17 3 0.03
18 4 0.04
20 5 0.05
21 24 0.25
22 24 0.25
23 19 0.20
24 10 0.10
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (23 bp):
ATTTTATAATATTTTAAATATAT
Found at i:31975086 original size:38 final size:35
Alignment explanation
Indices: 31975030--31975108 Score: 86
Period size: 38 Copynumber: 2.1 Consensus size: 35
31975020 ATTTTAAATG
* * *
31975030 TTTTATAATATATTTTTTTAAAAAATTTACATATATA
1 TTTT-TAATATATTATTTTAAAAAAATTAAATAT-TA
*
31975067 TTTTTAATATTATTATTTTTAAAAAATTTAAATATTA
1 TTTTTAATA-TATTA-TTTTAAAAAAATTAAATATTA
31975104 TTTTT
1 TTTTT
31975109 TAAATTTTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
36 5 0.13
37 15 0.39
38 18 0.47
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (35 bp):
TTTTTAATATATTATTTTAAAAAAATTAAATATTA
Found at i:31975233 original size:13 final size:13
Alignment explanation
Indices: 31975217--31975287 Score: 51
Period size: 13 Copynumber: 5.5 Consensus size: 13
31975207 TAAATGTATA
31975217 TTTTAAAAATTAT
1 TTTTAAAAATTAT
*
31975230 TTTT-TAAA--A-
1 TTTTAAAAATTAT
* *
31975239 TTTTAAATATAATT
1 TTTTAAAAATTA-T
31975253 TTTTAAAATTATTAT
1 TTTTAAAA--ATTAT
*
31975268 TTTTTAAAATTAT
1 TTTTAAAAATTAT
31975281 TTTTAAA
1 TTTTAAA
31975288 GATATTCTTA
Statistics
Matches: 44, Mismatches: 7, Indels: 14
0.68 0.11 0.22
Matches are distributed among these distances:
9 4 0.09
10 3 0.07
12 4 0.09
13 15 0.34
14 7 0.16
15 8 0.18
16 3 0.07
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (13 bp):
TTTTAAAAATTAT
Found at i:31975242 original size:22 final size:22
Alignment explanation
Indices: 31975216--31975262 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
31975206 TTAAATGTAT
*
31975216 ATTTTAAAAATTATTTTTTAAA
1 ATTTTAAAAATAATTTTTTAAA
*
31975238 ATTTTAAATATAATTTTTTAAA
1 ATTTTAAAAATAATTTTTTAAA
31975260 ATT
1 ATT
31975263 ATTATTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
ATTTTAAAAATAATTTTTTAAA
Found at i:31975245 original size:35 final size:37
Alignment explanation
Indices: 31975204--31975278 Score: 109
Period size: 38 Copynumber: 2.1 Consensus size: 37
31975194 TTTTATAATC
*
31975204 TTTTAAATGT-ATATTTTAAAA-ATTATTTTTTAAAA
1 TTTTAAATATAATATTTTAAAATATTATTTTTTAAAA
*
31975239 TTTTAAATATAATTTTTTAAAATTATTATTTTTTAAAA
1 TTTTAAATATAATATTTTAAAA-TATTATTTTTTAAAA
31975277 TT
1 TT
31975279 ATTTTTAAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
35 9 0.26
36 10 0.29
38 16 0.46
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.57
Consensus pattern (37 bp):
TTTTAAATATAATATTTTAAAATATTATTTTTTAAAA
Found at i:31975271 original size:16 final size:16
Alignment explanation
Indices: 31975250--31975281 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
31975240 TTTAAATATA
31975250 ATTTTTTAAAATTATT
1 ATTTTTTAAAATTATT
31975266 ATTTTTTAAAATTATT
1 ATTTTTTAAAATTATT
31975282 TTTAAAGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
ATTTTTTAAAATTATT
Found at i:31981274 original size:43 final size:42
Alignment explanation
Indices: 31981122--31981275 Score: 118
Period size: 43 Copynumber: 3.6 Consensus size: 42
31981112 GACATCGTGT
*
31981122 AAGACCACGTCTAGGACGTTGGCCTCGATTTGA-GATTTACATGA
1 AAGACCACGTCTAGGACGTTGGCATCG-TTT-ATGA-TTACATGA
* * * * * * * *
31981166 AAGATCATGTCTGGGACATTGGCGTCATATATGATTACGT-A
1 AAGACCACGTCTAGGACGTTGGCATCGTTTATGATTACATGA
*
31981207 TAAGACC-CTGTCTAGGACAG-TGGCATCGTTGTTTGATTACATGA
1 -AAGACCAC-GTCTAGGAC-GTTGGCATCGTT-TATGATTACATGA
*
31981251 AAGACCACGTCTGGGACGTTGGCAT
1 AAGACCACGTCTAGGACGTTGGCAT
31981276 TGTACGATCT
Statistics
Matches: 84, Mismatches: 18, Indels: 17
0.71 0.15 0.14
Matches are distributed among these distances:
41 1 0.01
42 27 0.32
43 33 0.39
44 23 0.27
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (42 bp):
AAGACCACGTCTAGGACGTTGGCATCGTTTATGATTACATGA
Found at i:31982101 original size:44 final size:44
Alignment explanation
Indices: 31982050--31982386 Score: 496
Period size: 44 Copynumber: 7.7 Consensus size: 44
31982040 TTGAAGTAAA
* *
31982050 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTATCC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGCTGTCC
* * * *
31982094 AATTGTTGATTAAATGATGCCCAAATGTTGATTTAATGCAGTCC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGCTGTCC
* *
31982138 AATTGTTGATTAAATACTGTCCAAATATTGATTGAATGCTGTCC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGCTGTCC
* **
31982182 AATTGTTGATTAAATGCTGTCCAAATGTTGATTTAATGCAATCC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGCTGTCC
* * *
31982226 AATTGTTGATTAAATGTTGTCCAAATATTGATTGAATGTTGTCC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGCTGTCC
* *
31982270 AATTGTTGATTAAATGTTGTCCAAATGTTGATTTAATGCTGTCC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGCTGTCC
31982314 AATTG-TGATTAAATGCTGTCCAAATGTTGATTGAATGCTGTCC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGCTGTCC
* **
31982357 AAATGTTGATTAAATGCTGTCTGAATGTTG
1 AATTGTTGATTAAATGCTGTCCAAATGTTG
31982387 GATAATTGCT
Statistics
Matches: 261, Mismatches: 31, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
43 40 0.15
44 221 0.85
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.39
Consensus pattern (44 bp):
AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGCTGTCC
Found at i:31982206 original size:88 final size:88
Alignment explanation
Indices: 31982050--31982386 Score: 550
Period size: 88 Copynumber: 3.8 Consensus size: 88
31982040 TTGAAGTAAA
* * *
31982050 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTATCCAATTGTTGATTAAATGATGCC
1 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTGTCCAATTGTTGATTAAATGCTGTC
31982115 CAAATGTTGATTTAATGCAGTCC
66 CAAATGTTGATTTAATGCAGTCC
*
31982138 AATTGTTGATTAAATACTGTCCAAATATTGATTGAATGCTGTCCAATTGTTGATTAAATGCTGTC
1 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTGTCCAATTGTTGATTAAATGCTGTC
*
31982203 CAAATGTTGATTTAATGCAATCC
66 CAAATGTTGATTTAATGCAGTCC
* * *
31982226 AATTGTTGATTAAATGTTGTCCAAATATTGATTGAATGTTGTCCAATTGTTGATTAAATGTTGTC
1 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTGTCCAATTGTTGATTAAATGCTGTC
*
31982291 CAAATGTTGATTTAATGCTGTCC
66 CAAATGTTGATTTAATGCAGTCC
* *
31982314 AATTG-TGATTAAATGCTGTCCAAATGTTGATTGAATGCTGTCCAAATGTTGATTAAATGCTGTC
1 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTGTCCAATTGTTGATTAAATGCTGTC
**
31982378 TGAATGTTG
66 CAAATGTTG
31982387 GATAATTGCT
Statistics
Matches: 231, Mismatches: 18, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
87 61 0.26
88 170 0.74
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.39
Consensus pattern (88 bp):
AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTGTCCAATTGTTGATTAAATGCTGTC
CAAATGTTGATTTAATGCAGTCC
Found at i:31982371 original size:11 final size:11
Alignment explanation
Indices: 31982229--31982372 Score: 50
Period size: 11 Copynumber: 13.2 Consensus size: 11
31982219 GCAATCCAAT
31982229 TGTTGATTAAA
1 TGTTGATTAAA
*
31982240 TGTTG-TCCAAA
1 TGTTGAT-TAAA
* *
31982251 TATTGATTGAA
1 TGTTGATTAAA
* *
31982262 TGTTG-TCCAAT
1 TGTTGAT-TAAA
31982273 TGTTGATTAAA
1 TGTTGATTAAA
*
31982284 TGTTG-TCCAAA
1 TGTTGAT-TAAA
*
31982295 TGTTGATTTAA
1 TGTTGATTAAA
* **
31982306 TGCTG-TCCAA
1 TGTTGATTAAA
31982316 T-TGTGATTAAA
1 TGT-TGATTAAA
* *
31982327 TGCTG-TCCAAA
1 TGTTGAT-TAAA
*
31982338 TGTTGATTGAA
1 TGTTGATTAAA
* *
31982349 TGCTG-TCCAAA
1 TGTTGAT-TAAA
31982360 TGTTGATTAAA
1 TGTTGATTAAA
31982371 TG
1 TG
31982373 CTGTCTGAAT
Statistics
Matches: 91, Mismatches: 29, Indels: 26
0.62 0.20 0.18
Matches are distributed among these distances:
10 11 0.12
11 75 0.82
12 5 0.05
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.41
Consensus pattern (11 bp):
TGTTGATTAAA
Found at i:31982396 original size:22 final size:22
Alignment explanation
Indices: 31982053--31982386 Score: 409
Period size: 22 Copynumber: 15.2 Consensus size: 22
31982043 AAGTAAAAAT
31982053 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * * *
31982075 TATTGATTGAATGCTATCCAAT
1 TGTTGATTAAATGCTGTCCAAA
* *
31982097 TGTTGATTAAATGATGCCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * *
31982119 TGTTGATTTAATGCAGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
*
31982141 TGTTGATTAAATACTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * *
31982163 TATTGATTGAATGCTGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
31982185 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* ** *
31982207 TGTTGATTTAATGCAATCCAAT
1 TGTTGATTAAATGCTGTCCAAA
*
31982229 TGTTGATTAAATGTTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * * *
31982251 TATTGATTGAATGTTGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
*
31982273 TGTTGATTAAATGTTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* *
31982295 TGTTGATTTAATGCTGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
31982317 TG-TGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
*
31982338 TGTTGATTGAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
**
31982360 TGTTGATTAAATGCTGTCTGAA
1 TGTTGATTAAATGCTGTCCAAA
31982382 TGTTG
1 TGTTG
31982387 GATAATTGCT
Statistics
Matches: 261, Mismatches: 50, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
21 19 0.07
22 242 0.93
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.40
Consensus pattern (22 bp):
TGTTGATTAAATGCTGTCCAAA
Found at i:31987160 original size:20 final size:19
Alignment explanation
Indices: 31987124--31987166 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
31987114 GAAATTGCAA
*
31987124 AAAAATATAAAATTTAT-T
1 AAAAATATAAAACTTATCT
31987142 AAAAATAATAGAAACTTATCT
1 AAAAAT-ATA-AAACTTATCT
31987163 AAAA
1 AAAA
31987167 TTTATGAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 6 0.29
19 3 0.14
20 7 0.33
21 5 0.24
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.30
Consensus pattern (19 bp):
AAAAATATAAAACTTATCT
Found at i:31987980 original size:9 final size:9
Alignment explanation
Indices: 31987968--31988063 Score: 52
Period size: 9 Copynumber: 9.9 Consensus size: 9
31987958 ACTTTTTTGC
31987968 AATTTTTAT
1 AATTTTTAT
31987977 AATTTTTAAT
1 AATTTTT-AT
31987987 ATATTTTT-T
1 A-ATTTTTAT
31987996 GCAATTTTATATT
1 --AATTTT-TA-T
*
31988009 AAATTTTAAT
1 -AATTTTTAT
*
31988019 ATTTTTTAT
1 AATTTTTAT
31988028 AATTTTT-T
1 AATTTTTAT
* *
31988036 CCAGTTCTTAT
1 --AATTTTTAT
31988047 AATTTTTAT
1 AATTTTTAT
*
31988056 TATTTTTA
1 AATTTTTA
31988064 AAAATTCTAC
Statistics
Matches: 67, Mismatches: 10, Indels: 20
0.69 0.10 0.21
Matches are distributed among these distances:
8 1 0.01
9 35 0.52
10 14 0.21
11 10 0.15
12 6 0.09
13 1 0.01
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (9 bp):
AATTTTTAT
Found at i:31987982 original size:30 final size:32
Alignment explanation
Indices: 31987948--31988025 Score: 110
Period size: 30 Copynumber: 2.5 Consensus size: 32
31987938 TTTTTTTTCT
31987948 ATTTTTAATA-ACTTTTTTGCAATTTT-TA-TA
1 ATTTTTAATATA-TTTTTTGCAATTTTATATTA
31987978 ATTTTTAATATATTTTTTGCAATTTTATATTA
1 ATTTTTAATATATTTTTTGCAATTTTATATTA
*
31988010 AATTTTAATAT-TTTTT
1 ATTTTTAATATATTTTT
31988026 ATAATTTTTT
Statistics
Matches: 44, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
30 24 0.55
31 8 0.18
32 12 0.27
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.63
Consensus pattern (32 bp):
ATTTTTAATATATTTTTTGCAATTTTATATTA
Found at i:31987983 original size:10 final size:10
Alignment explanation
Indices: 31987948--31988035 Score: 54
Period size: 10 Copynumber: 8.7 Consensus size: 10
31987938 TTTTTTTTCT
*
31987948 ATTTTTAATA
1 ATTTTTTATA
**
31987958 ACTTTTTTGCA
1 A-TTTTTTATA
31987969 A-TTTTTATA
1 ATTTTTTATA
*
31987978 ATTTTTAATA
1 ATTTTTTATA
**
31987988 TATTTTTTGCA
1 -ATTTTTTATA
*
31987999 ATTTTATATTA
1 ATTTTTTA-TA
* *
31988010 AATTTTAAT-
1 ATTTTTTATA
31988019 ATTTTTTATA
1 ATTTTTTATA
31988029 ATTTTTT
1 ATTTTTT
31988036 CCAGTTCTTA
Statistics
Matches: 56, Mismatches: 17, Indels: 10
0.67 0.20 0.12
Matches are distributed among these distances:
9 14 0.25
10 22 0.39
11 20 0.36
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (10 bp):
ATTTTTTATA
Found at i:31988047 original size:41 final size:42
Alignment explanation
Indices: 31987968--31988047 Score: 101
Period size: 41 Copynumber: 1.9 Consensus size: 42
31987958 ACTTTTTTGC
* *
31987968 AATTTTTATAATTTTTAATATATTTTTTGCAATTTTATATTA
1 AATTTTAATAATTTTTAATATATTTTTTCCAATTTTATATTA
* *
31988010 AATTTTAAT-ATTTTTTATA-ATTTTTTCCAGTTCTTATA
1 AATTTTAATAATTTTTAATATATTTTTTCCAATT-TTATA
31988048 ATTTTTATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
40 11 0.33
41 14 0.42
42 8 0.24
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.61
Consensus pattern (42 bp):
AATTTTAATAATTTTTAATATATTTTTTCCAATTTTATATTA
Found at i:31988078 original size:26 final size:27
Alignment explanation
Indices: 31988009--31988108 Score: 87
Period size: 26 Copynumber: 3.7 Consensus size: 27
31987999 ATTTTATATT
* **
31988009 AAATTTTAATATTTTTTATAATTTTTTC
1 AAATTCTAA-ATTTTTTATAATTTTTAA
* * *
31988037 CAGTTCTTATAA-TTTTTATTATTTTTAA
1 AAATTC-TA-AATTTTTTATAATTTTTAA
* *
31988065 AAATTCT-ACTTTTTTATAATTTTTGA
1 AAATTCTAAATTTTTTATAATTTTTAA
31988091 AAATTCTAAATTTTTTAT
1 AAATTCTAAATTTTTTAT
31988109 GACTTTAGAA
Statistics
Matches: 56, Mismatches: 12, Indels: 9
0.73 0.16 0.12
Matches are distributed among these distances:
25 1 0.02
26 21 0.38
27 10 0.18
28 20 0.36
29 3 0.05
30 1 0.02
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (27 bp):
AAATTCTAAATTTTTTATAATTTTTAA
Found at i:31995758 original size:44 final size:44
Alignment explanation
Indices: 31995704--31995798 Score: 145
Period size: 44 Copynumber: 2.2 Consensus size: 44
31995694 CCTATTAGCT
* * * *
31995704 AATACCATACACAAGCAGACTTTATACATTTCTCACATTGGTGA
1 AATACTATACAAAAGCAGACTTTATACAATTCACACATTGGTGA
*
31995748 AATACTATACAAAAGCAGACTTTATACAATTCACCCATTGGTGA
1 AATACTATACAAAAGCAGACTTTATACAATTCACACATTGGTGA
31995792 AATACTA
1 AATACTA
31995799 AACTTACACA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (44 bp):
AATACTATACAAAAGCAGACTTTATACAATTCACACATTGGTGA
Found at i:32003492 original size:25 final size:27
Alignment explanation
Indices: 32003432--32003492 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 27
32003422 CCAGGTAAGG
*
32003432 CTTCTTCTCCTTCATCCGTTCTTCATTC
1 CTTC-TCTTCTTCATCCGTTCTTCATTC
*
32003460 CTT-T-TTCTTCTTCCGTTCTTCA-T-
1 CTTCTCTTCTTCATCCGTTCTTCATTC
32003483 CTTCTCTTCT
1 CTTCTCTTCT
32003493 CAGCATATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
23 3 0.10
24 2 0.07
25 20 0.69
26 1 0.03
28 3 0.10
ACGTcount: A:0.05, C:0.36, G:0.03, T:0.56
Consensus pattern (27 bp):
CTTCTCTTCTTCATCCGTTCTTCATTC
Found at i:32003666 original size:15 final size:12
Alignment explanation
Indices: 32003631--32003662 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
32003621 CGTTCTCACT
*
32003631 AAAATTGGTAAA
1 AAAATCGGTAAA
32003643 AAAATCGGTAAA
1 AAAATCGGTAAA
32003655 AAAATCGG
1 AAAATCGG
32003663 CGGTTCCAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.56, C:0.06, G:0.19, T:0.19
Consensus pattern (12 bp):
AAAATCGGTAAA
Found at i:32004008 original size:12 final size:13
Alignment explanation
Indices: 32003985--32004010 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32003975 TCAATGAACC
32003985 CTTAATTTTTTTG
1 CTTAATTTTTTTG
32003998 CTTAATTTTTTTG
1 CTTAATTTTTTTG
32004011 GTACTCAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.69
Consensus pattern (13 bp):
CTTAATTTTTTTG
Found at i:32010034 original size:252 final size:251
Alignment explanation
Indices: 32009487--32010716 Score: 1910
Period size: 252 Copynumber: 4.9 Consensus size: 251
32009477 CCAGTCAGGC
* * *
32009487 TCATCTTCTTCCCCTCTTTCCTGGTCTTTTGATCCAACTTTGGCAACAGCGTCCA-TGGTCAGAA
1 TCATCTTCTTGCCCTCTTTCCTGATCTTTTGATCCAACTTTGGCAACAGCGTCCACT-GTCAGCA
* * * ** *
32009551 AAGGAGTTTGCTTGTCAACTTTGTCTTCTGCTATCAGGTCTTCATATTTCTCCGAAGGCTTAGAA
65 AAGGAGCTTGCTTATCAACTTTGTCTTCTGCTACCAGGTCTTCACGTTTCTCTGAAGGCTTAGAA
* * *
32009616 GTTTCATGATGAACACCTCCTTCATTTGTAGAAGTTCTAACAGAATCATGTTCTTTTGCATCCT-
130 GTTTCATGGTGAACACCTCCTTCATTTGTAGAAGTTCTAACAGAATCATGTTCTTCTGCCTCCTC
*
32009680 -CCTCTTCTAGTTTCAGATCCTCCCTTGCTTTTGGTTTTGTATCCCCACCCTTTGAT
195 CCCTCTTCTAGTTTCAGATCCTCCCTTGCTTTTGGTTCTGTATCCCCACCCTTTGAT
*
32009736 TCATCTTCTTGCCCTCTTTCCTGATCTTTTGATCCAACTTTGGCAACAGCATCCACTGTCAGCAA
1 TCATCTTCTTGCCCTCTTTCCTGATCTTTTGATCCAACTTTGGCAACAGCGTCCACTGTCAGCAA
* * * * *
32009801 AGGAGCTTGCTTATCAACTTCGTCTTCGGCTACCTGGTCTTCATGTTTCTCTGAAGGCTCAGAAG
66 AGGAGCTTGCTTATCAACTTTGTCTTCTGCTACCAGGTCTTCACGTTTCTCTGAAGGCTTAGAAG
* * *
32009866 TTTCATGGTGAACACCTCCTTCATTTGTAGAAGTTCTAACAGAATCAAGTTCTTTTGCATCCTCC
131 TTTCATGGTGAACACCTCCTTCATTTGTAGAAGTTCTAACAGAATCATGTTCTTCTGCCTCCTCC
* * *
32009931 TCCTCTTCTAGTTTTAGATCCTCCCTTGTTTTTGGTTCTGTATCCCCACCCTTTGGT
196 -CCTCTTCTAGTTTCAGATCCTCCCTTGCTTTTGGTTCTGTATCCCCACCCTTTGAT
*
32009988 TCATCTTCTTGCCCTCTTTCCTGATCTTTCGATCCAACTTTGGCAACAGCGTCCACTGTCAGCAA
1 TCATCTTCTTGCCCTCTTTCCTGATCTTTTGATCCAACTTTGGCAACAGCGTCCACTGTCAGCAA
32010053 AGGAGCTTGCTTATCAACTTTGTCTTCTGCTACCAGGTCTTCACGTTTCTCTGAAGGCTTAGAAG
66 AGGAGCTTGCTTATCAACTTTGTCTTCTGCTACCAGGTCTTCACGTTTCTCTGAAGGCTTAGAAG
32010118 TTTCATGGTGAACACCTCCTTCATTTGTAGAAGTTCTAACAGAATCATGTTCTTCTGCCTCCTCC
131 TTTCATGGTGAACACCTCCTTCATTTGTAGAAGTTCTAACAGAATCATGTTCTTCTGCCTCCTCC
* *
32010183 CTCTCTTCTCGTTTCAGATCCTCCCTTGCTTTTGGTTCTGTATCCCCACCCTTTGGT
196 C-CTCTTCTAGTTTCAGATCCTCCCTTGCTTTTGGTTCTGTATCCCCACCCTTTGAT
*
32010240 TCATCTTCTTGCCCTCTTTCCTGATCTTTCGATCCAACTTTGGCAACAGCGTCCACTGTCAGCAA
1 TCATCTTCTTGCCCTCTTTCCTGATCTTTTGATCCAACTTTGGCAACAGCGTCCACTGTCAGCAA
32010305 AGGAGCTTGCTTATCAACTTTGTCTTCTGCTACCAGGTCTTCACGTTTCTCTGAAGGCTTAGAAG
66 AGGAGCTTGCTTATCAACTTTGTCTTCTGCTACCAGGTCTTCACGTTTCTCTGAAGGCTTAGAAG
32010370 TTTCATGGTGAACACCTCCTTCATTTGTAGAAGTTCTAACAGAATCATGTTCTTCTGCCTCCTCC
131 TTTCATGGTGAACACCTCCTTCATTTGTAGAAGTTCTAACAGAATCATGTTCTTCTGCCTCCTCC
*
32010435 CTCTCTTCTCGTTTCAGATCCTCCCTTGCTTTTGGTTCTGTATCCCCACCCTTTGAT
196 C-CTCTTCTAGTTTCAGATCCTCCCTTGCTTTTGGTTCTGTATCCCCACCCTTTGAT
* * * * * ** * *
32010492 GCATCTTCTAGCCTTCTTTCCTGTTCTTTTGATTCAACTTTTACAAGAGTGTTGTCCACTGTCAG
1 TCATCTTCTTGCCCTCTTTCCTGATCTTTTGATCCAACTTTGGCAACA--G-CGTCCACTGTCAG
* * * *
32010557 CAAAGGAGCTTGCTTATCAACTTTGT-TCTCTACTATCAGGTCTTCACATTTCTCCGAAGGCTTA
63 CAAAGGAGCTTGCTTATCAACTTTGTCT-TCTGCTACCAGGTCTTCACGTTTCTCTGAAGGCTTA
* * * * *
32010621 GAAGTTTCATGGTGAACGCCTCCTTTATCTGTAAAAGTTCTAACAGAATCATGTTCTACTGCCTC
127 GAAGTTTCATGGTGAACACCTCCTTCATTTGTAGAAGTTCTAACAGAATCATGTTCTTCTGCCTC
*
32010686 CTCCCCCTTTTCTAGTTTCAGATCCTCCCTT
192 CT-CCCCTCTTCTAGTTTCAGATCCTCCCTT
32010717 ACTTCTGATT
Statistics
Matches: 917, Mismatches: 54, Indels: 14
0.93 0.05 0.01
Matches are distributed among these distances:
249 176 0.19
250 1 0.00
251 1 0.00
252 579 0.63
254 2 0.00
255 155 0.17
256 3 0.00
ACGTcount: A:0.18, C:0.28, G:0.16, T:0.38
Consensus pattern (251 bp):
TCATCTTCTTGCCCTCTTTCCTGATCTTTTGATCCAACTTTGGCAACAGCGTCCACTGTCAGCAA
AGGAGCTTGCTTATCAACTTTGTCTTCTGCTACCAGGTCTTCACGTTTCTCTGAAGGCTTAGAAG
TTTCATGGTGAACACCTCCTTCATTTGTAGAAGTTCTAACAGAATCATGTTCTTCTGCCTCCTCC
CCTCTTCTAGTTTCAGATCCTCCCTTGCTTTTGGTTCTGTATCCCCACCCTTTGAT
Found at i:32025735 original size:44 final size:43
Alignment explanation
Indices: 32025660--32025869 Score: 110
Period size: 44 Copynumber: 4.8 Consensus size: 43
32025650 CCAAGCCTTG
* * * *
32025660 TCTCCCTAAGCAGTAGTGGAGAAGGGT-GAAGATTGTAGATCTTA
1 TCTCCATAAGCAGTAGTGGAGCA-GATCGAAGA-CGTAGATCTTA
**
32025704 TCTCCATAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTA
1 TCTCCATAAGCAGTAGTGGAGCAGATCGAAGACGTAG-ATCTTA
** ** * *
32025748 TCTTTCC--AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAAG-CCTTG
1 TC--TCCATAAGCAGTAGT-GG-AGCAGATCGAAG--ACGTAGATCTTA
* * * * *
32025792 TCTCCCTAAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTA
1 TCTCCATAAGCAGTAGTGGAGCAGATCGAAGA-CGTAGATCTTA
*
32025836 TCTCCCA-AAGCAGTAATGGAGCAGATCGAAGACG
1 TCT-CCATAAGCAGTAGTGGAGCAGATCGAAGACG
32025870 GCGAATCTTA
Statistics
Matches: 124, Mismatches: 27, Indels: 31
0.68 0.15 0.17
Matches are distributed among these distances:
42 8 0.06
43 10 0.08
44 91 0.73
45 5 0.04
46 10 0.08
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (43 bp):
TCTCCATAAGCAGTAGTGGAGCAGATCGAAGACGTAGATCTTA
Found at i:32025878 original size:44 final size:44
Alignment explanation
Indices: 32025698--32026278 Score: 138
Period size: 44 Copynumber: 13.2 Consensus size: 44
32025688 AAGATTGTAG
32025698 ATCTTATCT-CCATAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
1 ATCTTATCTCCCA-AAGCAGTAGTGGAGCAGATCGAAGACGGCGA
* ** ** *
32025742 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACCA
1 ATCTTATC-TCCCAAAGCAGTAGT-GG-AGCAGATCGAAGACGGCGA
* * * * * * ** *
32025785 AGCCTTGTCTCCCTAAGCAGTAGTGGAGAAGGTTGAAGATTG-TA
1 A-TCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
*
32025829 GATCTTATCTCCCAAAGCAGTAATGGAGCAGATCGAAGACGGCGA
1 -ATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
* * ** * ** *
32025874 ATCTTATCTTTCC-AAG-A-TAGTGGAAAGCAAATTTAAGCCACCAA
1 ATCTTATC-TCCCAAAGCAGTAGTGG--AGCAGATCGAAGACGGCGA
* * * ** * * * * ** *
32025918 ACCTTGTCTTCCTGAGCAGCAGTGGAGAAGGTTGAAGATTG-TA
1 ATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
* * *
32025961 GATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGTGA
1 -ATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
* ** ** *
32026006 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACCA
1 ATCTTATC-TCCCAAAGCAGTAGT-GG-AGCAGATCGAAGACGGCGA
* * ** * * * * * ****
32026049 AGCCTTGTCTCCCTGAGTAGTAGTAGAGTAGGTTGAAGA-TTATA
1 A-TCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
*
32026093 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
1 -ATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
* * ** ** *
32026138 GTCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACCA
1 ATCTTATC-TCCCAAAGCAGTAGT-GG-AGCAGATCGAAGACGGCGA
* ** * * * ** *****
32026181 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAGATTATAA
1 A-TCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
*
32026226 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
1 ATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
32026270 ATCTTATCT
1 ATCTTATCT
32026279 TTCCAAGATA
Statistics
Matches: 378, Mismatches: 122, Indels: 74
0.66 0.21 0.13
Matches are distributed among these distances:
42 17 0.04
43 34 0.09
44 282 0.75
45 27 0.07
46 18 0.05
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (44 bp):
ATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
Found at i:32026502 original size:132 final size:132
Alignment explanation
Indices: 32025648--32026472 Score: 1362
Period size: 132 Copynumber: 6.2 Consensus size: 132
32025638 ACTGGTGAAA
* * *
32025648 CACCAAGCCTTGTCTCCCTAAGCAGTAGTGGAGAAGGGTGAAGATTGTAGATCTTATCTCCATAA
1 CACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAA
32025713 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
32025778 GC
131 GC
* *
32025780 CACCAAGCCTTGTCTCCCTAAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCAAA
1 CACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* * *
32025845 GCAGTAATGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGAAAGCAAATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
32025910 GC
131 GC
* * *
32025912 CACCAAACCTTGTCTTCCTGAGCAGCAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* *
32025977 GCAGTAGTGGAGCAAATCGAAGACGGTGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
32026042 GC
131 GC
* * * *
32026044 CACCAAGCCTTGTCTCCCTGAGTAGTAGTAGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAA
*
32026109 GCAGTAGTGGAGCAGATCGAAGACGGCGAGTCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
32026174 GC
131 GC
* * * * * *
32026176 CACCAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAGATTATAAATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAA
32026241 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
32026306 GC
131 GC
* * * * * *
32026308 CACCAAGCCTTATCTCCCTGAGCAGCAGTGGAAAAGGGTAAAGATTATAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAA
*
32026373 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTGA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
32026438 GC
131 GC
*
32026440 CACCAAGCCTTGTCTCCCTAAGCAGTAGTGGAG
1 CACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAG
32026473 CAGATCGAAG
Statistics
Matches: 651, Mismatches: 42, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 651 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (132 bp):
CACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAA
GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
GC
Found at i:32026615 original size:44 final size:45
Alignment explanation
Indices: 32026562--32026682 Score: 129
Period size: 44 Copynumber: 2.7 Consensus size: 45
32026552 ACAGTAGAAT
* * * *
32026562 AGATTAAAGATTACAGATCTTATCTCCCT-AGGCAGTAGTGGAGC
1 AGATTAAAGATGACAAATCTTATCTCCCTGAAGCAGCAGTGGAGC
* * *
32026606 AGATCAAAGATGACAAATTTTATCTCCCTGAAGTAGCAGTGGAGC
1 AGATTAAAGATGACAAATCTTATCTCCCTGAAGCAGCAGTGGAGC
** * *
32026651 AGATTAAAGCCGA-TAATCTTATCTCTCTGAAG
1 AGATTAAAGATGACAAATCTTATCTCCCTGAAG
32026683 TTGCAGAGAG
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
44 41 0.65
45 22 0.35
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (45 bp):
AGATTAAAGATGACAAATCTTATCTCCCTGAAGCAGCAGTGGAGC
Found at i:32026631 original size:396 final size:396
Alignment explanation
Indices: 32025648--32026654 Score: 1102
Period size: 396 Copynumber: 2.5 Consensus size: 396
32025638 ACTGGTGAAA
* * * * * *
32025648 CACCAAGCCTTGTCTCCCTAAGCAGTAGTGGAGAAGGGT-GAAGATTG-TAGATCTTATCTCCAT
1 CACCAAGCCTTGTCTCCCTAAGCAGTAGTAGAGCA-GATCGAAGA-TGACAGATCTTACCTCCCT
* ** * * * *
32025711 AAGCAGTAGTGGAGCAGATCGAAGACGGCGAA-TCTTATCTTTCCAAGATAGTGGGAAGCAGATT
64 AAGCAGTAGTGGAGCACATCGAAGACAAC-AAGTCTTATCTTCCCAAAACAGTGAGAAGCAGATT
* * * * * * ** * *
32025775 TAAGCCACCAAGCCTTGTCTCCCTAAGCAGTAGTGGAGAAGGTTGAAGATTG-TAGATCTTATCT
128 AAAGCCACCAAGCCTTATCTCCCTGAGCAGCAGTGGAGCAGATCAAAGA-TGACAAATCTTATCT
* *
32025839 CCCAAAGCAGTAATGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGAAAGCAA
192 CCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGAAAGCAA
* * * * * *
32025904 ATTTAAGCCACCAAACCTTGTCTTCCTGAGCAGCAGTGGAGAAGGTTGAAGATTGTAGATCTTAT
257 ATTTAAGCCACCAAACCTTATCTCCCTGAGCAGCAGTGGAAAAGGGTAAAGATTATAGATCTTAT
*
32025969 CTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGTGAATCTTATCTTTCCAAGATAGTGGGAAGC
322 CTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGC
32026034 AGATTTAAGC
387 AGATTTAAGC
* * * * * * * *
32026044 CACCAAGCCTTGTCTCCCTGAGTAGTAGTAGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTAAGCAGTAGTAGAGCAGATCGAAGATGACAGATCTTACCTCCCTAA
* ** * * * * * *
32026109 GCAGTAGTGGAGCAGATCGAAGACGGCGAGTCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCACATCGAAGACAACAAGTCTTATCTTCCCAAAACAGTGAGAAGCAGATTAAA
* * * * *
32026174 GCCACCAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAGATTATAAATCTTATCTCCCT
131 GCCACCAAGCCTTATCTCCCTGAGCAGCAGTGGAGCAGATCAAAGATGACAAATCTTATCTCCCT
* *
32026239 AAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTT
196 AAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGAAAGCAAATTT
*
32026304 AAGCCACCAAGCCTTATCTCCCTGAGCAGCAGTGGAAAAGGGTAAAGATTATAGATCTTATCTCC
261 AAGCCACCAAACCTTATCTCCCTGAGCAGCAGTGGAAAAGGGTAAAGATTATAGATCTTATCTCC
*
32026369 CTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGAT
326 CTAAGCAGTAGTGGAGCAAATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGAT
*
32026434 TTGAGC
391 TTAAGC
* * * *
32026440 CACCAAGCCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGT
1 CACCAAGCCTTGTCTCCCTAAGCAGTAGTAGAGCAGATCGAAGATGACAGATCTTACCTCCCT-A
* * * * * * * * *
32026505 GGTTA-TAGTGGGGTACATTGAAGCCAATAATTC-TA-CTTCCCTAGACAACAGT-AGAA-TAGA
65 AG-CAGTAGTGGAGCACATCGAAGACAACAAGTCTTATCTTCCC-A-A-AACAGTGAGAAGCAGA
** * * *
32026565 TTAAAG--ATTACAGATCTTATCTCCCT-AGGCAGTAGTGGAGCAGATCAAAGATGACAAATTTT
126 TTAAAGCCACCA-AG-CCTTATCTCCCTGA-GCAGCAGTGGAGCAGATCAAAGATGACAAATCTT
* *
32026627 ATCTCCCTGAAGTAGCAGTGGAGCAGAT
188 ATCTCCCT-AAGCAGTAGTGGAGCAGAT
32026655 TAAAGCCGAT
Statistics
Matches: 528, Mismatches: 70, Indels: 25
0.85 0.11 0.04
Matches are distributed among these distances:
394 2 0.00
395 14 0.03
396 467 0.88
397 40 0.08
398 5 0.01
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (396 bp):
CACCAAGCCTTGTCTCCCTAAGCAGTAGTAGAGCAGATCGAAGATGACAGATCTTACCTCCCTAA
GCAGTAGTGGAGCACATCGAAGACAACAAGTCTTATCTTCCCAAAACAGTGAGAAGCAGATTAAA
GCCACCAAGCCTTATCTCCCTGAGCAGCAGTGGAGCAGATCAAAGATGACAAATCTTATCTCCCT
AAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGAAAGCAAATTT
AAGCCACCAAACCTTATCTCCCTGAGCAGCAGTGGAAAAGGGTAAAGATTATAGATCTTATCTCC
CTAAGCAGTAGTGGAGCAAATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGAT
TTAAGC
Found at i:32026683 original size:44 final size:45
Alignment explanation
Indices: 32026578--32026698 Score: 122
Period size: 44 Copynumber: 2.8 Consensus size: 45
32026568 AAGATTACAG
* * * *
32026578 ATCTTATCTCCCT-AGGCAGTAGTGGAGCAGATCAAAGATGACAA
1 ATCTTATCTCCCTGAAGTAGCAGTGGAGCAGATCAAAGACGACAA
* * * *
32026622 ATTTTATCTCCCTGAAGTAGCAGTGGAGCAGATTAAAGCCGA-TA
1 ATCTTATCTCCCTGAAGTAGCAGTGGAGCAGATCAAAGACGACAA
* * *
32026666 ATCTTATCTCTCTGAAGTTGCAG-AGAGCAGATC
1 ATCTTATCTCCCTGAAGTAGCAGTGGAGCAGATC
32026699 CTATTTAGTC
Statistics
Matches: 63, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
43 8 0.13
44 33 0.52
45 22 0.35
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26
Consensus pattern (45 bp):
ATCTTATCTCCCTGAAGTAGCAGTGGAGCAGATCAAAGACGACAA
Found at i:32028225 original size:21 final size:21
Alignment explanation
Indices: 32028201--32028253 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
32028191 TTAACGAATG
32028201 TTTTTATATATA-TATATATTA
1 TTTTTATATATATTAT-TATTA
*
32028222 TTTTTATGACA-ATTATTATTA
1 TTTTTAT-ATATATTATTATTA
32028243 TTTTTATATAT
1 TTTTTATATAT
32028254 TTTTACGTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
20 2 0.07
21 20 0.74
22 5 0.19
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (21 bp):
TTTTTATATATATTATTATTA
Found at i:32029006 original size:98 final size:98
Alignment explanation
Indices: 32028883--32029073 Score: 328
Period size: 98 Copynumber: 1.9 Consensus size: 98
32028873 AAAAATCATG
* *
32028883 AAGGAAATGTTCCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
32028948 AAATCTTGGATAAGTGGAAGTTCTTTTAAAGTA
66 AAATCTTGGATAAGTGGAAGTTCTTTTAAAGTA
* *
32028981 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGGATCGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
* *
32029046 AAATCTTGGATGAGTGGATGTTCTTTTA
66 AAATCTTGGATAAGTGGAAGTTCTTTTA
32029074 GTTTTATTCT
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 87 1.00
ACGTcount: A:0.27, C:0.11, G:0.26, T:0.36
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
AAATCTTGGATAAGTGGAAGTTCTTTTAAAGTA
Found at i:32030279 original size:21 final size:20
Alignment explanation
Indices: 32030245--32030285 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
32030235 TTCACAAATT
*
32030245 AAATAAATATATTTATATTC
1 AAATAAATAAATTTATATTC
*
32030265 AAATAAAATAAATTTGTATTC
1 AAAT-AAATAAATTTATATTC
32030286 TTTATTTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.41
Consensus pattern (20 bp):
AAATAAATAAATTTATATTC
Found at i:32043408 original size:231 final size:231
Alignment explanation
Indices: 32043129--32043606 Score: 893
Period size: 231 Copynumber: 2.1 Consensus size: 231
32043119 GTTAAGCAGA
*
32043129 GTTGAATCATTGGATCTTATTGAAGGACAGCGATTACTGATGCAGAAAGAGCTTGAGAGGTATAA
1 GTTGAATCTTTGGATCTTATTGAAGGACAGCGATTACTGATGCAGAAAGAGCTTGAGAGGTATAA
32043194 AGAAAGGCTTGAGGAGGCATCTAGGTGTCAAATACACTTGGAAGAGCAAGCTTTGCAGAGGGAAA
66 AGAAAGGCTTGAGGAGGCATCTAGGTGTCAAATACACTTGGAAGAGCAAGCTTTGCAGAGGGAAA
32043259 CTGAATCCAAAGAGAAGCTTAGCAAAGTTTGCAAAGCGCTTGAAGCAGCAAAATCTGAATTGAGT
131 CTGAATCCAAAGAGAAGCTTAGCAAAGTTTGCAAAGCGCTTGAAGCAGCAAAATCTGAATTGAGT
32043324 AAAGAACGAGAGAGAGCAGTGTCTTTGACGAAAAGG
196 AAAGAACGAGAGAGAGCAGTGTCTTTGACGAAAAGG
*
32043360 GTTGAATCTTTGGATCTTATTGAAGGACAGCGATTCCTGATGCAGAAAGAGCTTGAGAGGTATAA
1 GTTGAATCTTTGGATCTTATTGAAGGACAGCGATTACTGATGCAGAAAGAGCTTGAGAGGTATAA
*
32043425 AGAAAGGCTTGAGGAGGCATCTAGGTGTCAAATACACTTGGAAGAGCAAGCTTTGCAGAGGGAAG
66 AGAAAGGCTTGAGGAGGCATCTAGGTGTCAAATACACTTGGAAGAGCAAGCTTTGCAGAGGGAAA
* *
32043490 CTGAATCCAAAGAGAAGCTTAGCGAAGTTTGCAATGCGCTTGAAGCAGCAAAATCTGAATTGAGT
131 CTGAATCCAAAGAGAAGCTTAGCAAAGTTTGCAAAGCGCTTGAAGCAGCAAAATCTGAATTGAGT
* *
32043555 AAAGAACGAGAGAGGGCAGTGTCTTTGACGGAAAGG
196 AAAGAACGAGAGAGAGCAGTGTCTTTGACGAAAAGG
32043591 GTTGAATCTTTGGATC
1 GTTGAATCTTTGGATC
32043607 ACCTTGAAGA
Statistics
Matches: 240, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
231 240 1.00
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (231 bp):
GTTGAATCTTTGGATCTTATTGAAGGACAGCGATTACTGATGCAGAAAGAGCTTGAGAGGTATAA
AGAAAGGCTTGAGGAGGCATCTAGGTGTCAAATACACTTGGAAGAGCAAGCTTTGCAGAGGGAAA
CTGAATCCAAAGAGAAGCTTAGCAAAGTTTGCAAAGCGCTTGAAGCAGCAAAATCTGAATTGAGT
AAAGAACGAGAGAGAGCAGTGTCTTTGACGAAAAGG
Found at i:32043649 original size:231 final size:231
Alignment explanation
Indices: 32043129--32043680 Score: 804
Period size: 231 Copynumber: 2.4 Consensus size: 231
32043119 GTTAAGCAGA
* ** * * * **
32043129 GTTGAATCATTGGATCTTATTGAAGGACAGCGATTACTGATGCAGAAAGAGCTTGAGAGGTATAA
1 GTTGAATCTTTGGATCACATTGAAGGACAGCGACTCCAGAAACAGAAAGAGCTTGAGAGGTATAA
32043194 AGAAAGGCTTGAGGAGGCATCTAGGTGTCAAATACACTTGGAAGAGCAAGCTTTGCAGAGGGAAA
66 AGAAAGGCTTGAGGAGGCATCTAGGTGTCAAATACACTTGGAAGAGCAAGCTTTGCAGAGGGAAA
32043259 CTGAATCCAAAGAGAAGCTTAGCAAAGTTTGCAAAGCGCTTGAAGCAGCAAAATCTGAATTGAGT
131 CTGAATCCAAAGAGAAGCTTAGCAAAGTTTGCAAAGCGCTTGAAGCAGCAAAATCTGAATTGAGT
32043324 AAAGAACGAGAGAGAGCAGTGTCTTTGACGAAAAGG
196 AAAGAACGAGAGAGAGCAGTGTCTTTGACGAAAAGG
** * * **
32043360 GTTGAATCTTTGGATCTTATTGAAGGACAGCGATTCCTGATGCAGAAAGAGCTTGAGAGGTATAA
1 GTTGAATCTTTGGATCACATTGAAGGACAGCGACTCCAGAAACAGAAAGAGCTTGAGAGGTATAA
*
32043425 AGAAAGGCTTGAGGAGGCATCTAGGTGTCAAATACACTTGGAAGAGCAAGCTTTGCAGAGGGAAG
66 AGAAAGGCTTGAGGAGGCATCTAGGTGTCAAATACACTTGGAAGAGCAAGCTTTGCAGAGGGAAA
* *
32043490 CTGAATCCAAAGAGAAGCTTAGCGAAGTTTGCAATGCGCTTGAAGCAGCAAAATCTGAATTGAGT
131 CTGAATCCAAAGAGAAGCTTAGCAAAGTTTGCAAAGCGCTTGAAGCAGCAAAATCTGAATTGAGT
* *
32043555 AAAGAACGAGAGAGGGCAGTGTCTTTGACGGAAAGG
196 AAAGAACGAGAGAGAGCAGTGTCTTTGACGAAAAGG
* * * * * *
32043591 GTTGAATCTTTGGATCACCTTGAA-GAGCAGTGGCTCCAGAAACAGGATGAGGTTGAGA-G-ATA
1 GTTGAATCTTTGGATCACATTGAAGGA-CAGCGACTCCAGAAACAGAAAGAGCTTGAGAGGTATA
* * *
32043653 CAAGAAAATGCTTGAGGAAGCATGTAGG
65 -AAG-AAAGGCTTGAGGAGGCATCTAGG
32043681 AGTCGAAGTC
Statistics
Matches: 296, Mismatches: 22, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
229 3 0.01
230 6 0.02
231 287 0.97
ACGTcount: A:0.35, C:0.14, G:0.30, T:0.22
Consensus pattern (231 bp):
GTTGAATCTTTGGATCACATTGAAGGACAGCGACTCCAGAAACAGAAAGAGCTTGAGAGGTATAA
AGAAAGGCTTGAGGAGGCATCTAGGTGTCAAATACACTTGGAAGAGCAAGCTTTGCAGAGGGAAA
CTGAATCCAAAGAGAAGCTTAGCAAAGTTTGCAAAGCGCTTGAAGCAGCAAAATCTGAATTGAGT
AAAGAACGAGAGAGAGCAGTGTCTTTGACGAAAAGG
Found at i:32064622 original size:125 final size:126
Alignment explanation
Indices: 32064399--32064646 Score: 426
Period size: 125 Copynumber: 2.0 Consensus size: 126
32064389 TTAGGGTTTT
* *
32064399 TAGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGATCAAATAGTATAAAATCGCTTCTAGC
1 TAGGTCATGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC
*
32064464 AGGATGCTATTTGAGAAGAATTTGTGAAAATCGCGCCCTCGTGGACGCGCTTTTGCTATAG
66 AGGATGCTATTTGAGAAGAATTTGTGAAAATCGCGCCCTCATGGACGCGCTTTTGCTATAG
***
32064525 TAGGTCATGGAAGAAATAATTT-TTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC
1 TAGGTCATGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC
*
32064589 AGGATGCTATTTGAGAAGAATTTGTGAAAATCGCGCCTTCATGGACGCGCTTTTGCTA
66 AGGATGCTATTTGAGAAGAATTTGTGAAAATCGCGCCCTCATGGACGCGCTTTTGCTA
32064647 CAATAGCATG
Statistics
Matches: 115, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
125 94 0.82
126 21 0.18
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (126 bp):
TAGGTCATGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC
AGGATGCTATTTGAGAAGAATTTGTGAAAATCGCGCCCTCATGGACGCGCTTTTGCTATAG
Found at i:32067512 original size:45 final size:46
Alignment explanation
Indices: 32067445--32067568 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
32067435 CATATGACCT
*
32067445 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCT-AGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
32067488 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
32067534 CTTATCACTTTATCACTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
32067569 CACTTATCAC
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 8 0.11
44 4 0.05
45 21 0.28
46 41 0.55
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (46 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
Found at i:32067551 original size:46 final size:45
Alignment explanation
Indices: 32067445--32067679 Score: 207
Period size: 37 Copynumber: 5.8 Consensus size: 45
32067435 CATATGACCT
*
32067445 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCTAGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
32067488 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTACCA
*
32067534 CTTATCACTTTATCACTTGATCAGATAA--GT-G-T-AG---CCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
32067571 CTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
32067608 CTTATCACTTTGTTTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
32067645 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
32067680 CACTTATCAC
Statistics
Matches: 177, Mismatches: 7, Indels: 18
0.88 0.03 0.09
Matches are distributed among these distances:
37 101 0.57
39 2 0.01
40 3 0.02
42 1 0.01
43 9 0.05
44 6 0.03
45 21 0.12
46 34 0.19
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (45 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
Found at i:32067572 original size:37 final size:37
Alignment explanation
Indices: 32067530--32067706 Score: 300
Period size: 37 Copynumber: 4.8 Consensus size: 37
32067520 AGCTGAAGCT
* **
32067530 ACCACTTATCACTTTATCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
* *
32067567 GCCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
32067604 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
32067641 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
*
32067678 GCCACTTATCACTTTGTTTCTTGATCAGA
1 ACCACTTATCACTTTGTTTCTTGATCAGA
32067707 AGTACTCAAA
Statistics
Matches: 134, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 134 1.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.39
Consensus pattern (37 bp):
ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
Found at i:32071610 original size:20 final size:20
Alignment explanation
Indices: 32071573--32071610 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
32071563 TTTATTTTTA
*
32071573 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
32071593 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
32071611 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:32072546 original size:12 final size:12
Alignment explanation
Indices: 32072503--32072546 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
32072493 ACTTTTACGG
*
32072503 TTTAAAAAAAT-
1 TTTAAAAAATTA
32072514 TTTAAAAAATTA
1 TTTAAAAAATTA
**
32072526 TTTTTAAAATTA
1 TTTAAAAAATTA
32072538 TTTAAAAAA
1 TTTAAAAAA
32072547 GGGAGTTAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
11 10 0.37
12 17 0.63
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
TTTAAAAAATTA
Found at i:32072635 original size:11 final size:11
Alignment explanation
Indices: 32072615--32072654 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
32072605 AAGAGAATTT
32072615 TTGA-AGGAAA
1 TTGAGAGGAAA
32072625 TTGAGAGGAAA
1 TTGAGAGGAAA
*
32072636 TTGAGAGAAAA
1 TTGAGAGGAAA
32072647 TTTGAGAG
1 -TTGAGAG
32072655 AGGATTAGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 4 0.15
11 16 0.59
12 7 0.26
ACGTcount: A:0.45, C:0.00, G:0.33, T:0.23
Consensus pattern (11 bp):
TTGAGAGGAAA
Found at i:32075219 original size:24 final size:24
Alignment explanation
Indices: 32075152--32075219 Score: 91
Period size: 24 Copynumber: 2.8 Consensus size: 24
32075142 GATTTCATAA
* *
32075152 TCAAATACATATGCATAAACAAAT
1 TCAAATACAAATGCATACACAAAT
*
32075176 TCAGATACAAATGCATACACAAAT
1 TCAAATACAAATGCATACACAAAT
* *
32075200 TCAAATACAGATGCAGACAC
1 TCAAATACAAATGCATACAC
32075220 TGATCCTACC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.50, C:0.21, G:0.09, T:0.21
Consensus pattern (24 bp):
TCAAATACAAATGCATACACAAAT
Found at i:32086450 original size:21 final size:21
Alignment explanation
Indices: 32086424--32086464 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
32086414 ATCTGCTCAA
* *
32086424 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
32086445 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
32086465 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:32091295 original size:90 final size:91
Alignment explanation
Indices: 32091196--32091365 Score: 281
Period size: 90 Copynumber: 1.9 Consensus size: 91
32091186 ATCAATAAAT
* * *
32091196 AAACTAATCAATGTTCAAACTTTGAACATGCTTTATTAAAC-ATTCAATTTCA-TTATACGAAAT
1 AAACTAATCAATGTTCAAACTTTGAACATGCTTTAATAAACTAATCAATAT-ATTTATACGAAAT
32091259 GAAAATTAAATTTAAATTTAAATGTTC
65 GAAAATTAAATTTAAATTTAAATGTTC
32091286 AAACTAATCAATGTTCAAACTTTGAACATGCTTTAATAAACTAATCAATATATTTATACGAAATG
1 AAACTAATCAATGTTCAAACTTTGAACATGCTTTAATAAACTAATCAATATATTTATACGAAATG
*
32091351 AAATTTAAATTTAAA
66 AAAATTAAATTTAAA
32091366 ATGTTATAAA
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
90 41 0.55
91 33 0.45
ACGTcount: A:0.45, C:0.12, G:0.06, T:0.36
Consensus pattern (91 bp):
AAACTAATCAATGTTCAAACTTTGAACATGCTTTAATAAACTAATCAATATATTTATACGAAATG
AAAATTAAATTTAAATTTAAATGTTC
Found at i:32094549 original size:91 final size:91
Alignment explanation
Indices: 32094437--32094719 Score: 356
Period size: 91 Copynumber: 3.0 Consensus size: 91
32094427 ATGATTTTAG
*
32094437 TAAATTCATATAAGAATATTTATTATTAAGAATTTTATGAAATTATAT-ATCATTATTAAATTAT
1 TAAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTATATAAT-ATTATTAAATTAT
* *
32094501 TTTTAATATTAATTATTTTAAATTATA
65 ATTTAATAATAATTATTTTAAATTATA
*
32094528 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATAATATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTATATAATATTATTAAATTATA
32094593 TTTAATAATAATTATTTTAAATTATA
66 TTTAATAATAATTATTTTAAATTATA
* * * *
32094619 CAAATTCATATAAGAAAATTTATTAGTAATAATTATT-TTAAATTTATTAAATCATATATTTTAA
1 TAAATTCATATAAGAAAATTTATTATTAAGAATT-TTATGAAA-TTA-T--AT-A-ATA--TT-A
*
32094683 TTAAAATATATTTAATAATAATT-TTTTCAAATTATA
56 TTAAATTATATTTAATAATAATTATTTT-AAATTATA
32094719 T
1 T
32094720 TTTATAGTAT
Statistics
Matches: 169, Mismatches: 11, Indels: 15
0.87 0.06 0.08
Matches are distributed among these distances:
91 118 0.70
92 7 0.04
93 1 0.01
95 2 0.01
96 1 0.01
97 3 0.02
99 6 0.04
100 31 0.18
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTATATAATATTATTAAATTATA
TTTAATAATAATTATTTTAAATTATA
Found at i:32094651 original size:47 final size:47
Alignment explanation
Indices: 32094437--32094676 Score: 209
Period size: 47 Copynumber: 5.3 Consensus size: 47
32094427 ATGATTTTAG
* * *
32094437 TAAATTCATATAAGAATATTTATTATTAAGAATT-TTATGAAATTATA
1 TAAATTCATATAAGAATATTTATTAATAATAATTATT-TTAAATTATA
* * *
32094484 TATCATT-AT-TAA-ATTATTT-TTAATATTAATTATTTTAAATTATA
1 TA-AATTCATATAAGAATATTTATTAATAATAATTATTTTAAATTATA
* * *
32094528 TAAATTCATATAAGAAAATTTATT-ATCAAGAATT-TTATGAAATTATA
1 TAAATTCATATAAGAATATTTATTAAT-AATAATTATT-TTAAATTATA
* *
32094575 TAATATT-AT-TAA-ATTATAT-TTAATAATAATTATTTTAAATTATA
1 TAA-ATTCATATAAGAATATTTATTAATAATAATTATTTTAAATTATA
* * *
32094619 CAAATTCATATAAGAAAATTTATTAGTAATAATTATTTTAAATT-TA
1 TAAATTCATATAAGAATATTTATTAATAATAATTATTTTAAATTATA
32094665 TTAAA-TCATATA
1 -TAAATTCATATA
32094677 TTTTAATTAA
Statistics
Matches: 154, Mismatches: 23, Indels: 33
0.73 0.11 0.16
Matches are distributed among these distances:
43 6 0.04
44 43 0.28
45 22 0.14
46 28 0.18
47 49 0.32
48 6 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (47 bp):
TAAATTCATATAAGAATATTTATTAATAATAATTATTTTAAATTATA
Found at i:32094682 original size:23 final size:23
Alignment explanation
Indices: 32094634--32094682 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
32094624 TCATATAAGA
32094634 AAATTTATTAGTAATAATTATTTT
1 AAATTTATTAG-AATAATTATTTT
*
32094658 AAATTTATTA-AATCATATATTTT
1 AAATTTATTAGAATAAT-TATTTT
32094681 AA
1 AA
32094683 TTAAAATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 5 0.22
23 8 0.35
24 10 0.43
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (23 bp):
AAATTTATTAGAATAATTATTTT
Found at i:32094926 original size:18 final size:17
Alignment explanation
Indices: 32094898--32094932 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
32094888 ATTATTAAGA
*
32094898 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
32094915 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
32094933 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:32095046 original size:18 final size:17
Alignment explanation
Indices: 32095018--32095052 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
32095008 ATTATTAAGA
*
32095018 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
32095035 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
32095053 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:32095067 original size:120 final size:120
Alignment explanation
Indices: 32094661--32095074 Score: 753
Period size: 120 Copynumber: 3.5 Consensus size: 120
32094651 TTATTTTAAA
*
32094661 TTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATT-TTTTCAAATTATATTTTAT
1 TTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTCAAATTATATTTTAT
32094725 AGTATCATATATTATGATTTAGTAAATTCATATAAGAATATTGATTATTAAGAAT
66 AGTATCATATATTATGATTTAGTAAATTCATATAAGAATATTGATTATTAAGAAT
32094780 TTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTAT-TTCAAATTATATTTTAT
1 TTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTCAAATTATATTTTAT
32094844 AGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAAT
66 AGTATCATATATTATGA-TTTAGTAAATTCATATAAGAATATTGATTATTAAGAAT
*
32094900 TTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTTTAT
1 TTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTCAAATTATATTTTAT
32094964 AGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAAT
66 AGTATCATATATTATGATTT-AGTAAATTCATATAAGAATATTGATTATTAAGAAT
* *
32095020 TTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAAAT
1 TTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTCAAAT
32095075 ATGATTAAAT
Statistics
Matches: 289, Mismatches: 1, Indels: 8
0.97 0.00 0.03
Matches are distributed among these distances:
119 82 0.28
120 201 0.70
121 6 0.02
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (120 bp):
TTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTCAAATTATATTTTAT
AGTATCATATATTATGATTTAGTAAATTCATATAAGAATATTGATTATTAAGAAT
Done.