Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 105 of 240
Found at i:32440164 original size:46 final size:46
Alignment explanation
Indices: 32440110--32440204 Score: 181
Period size: 46 Copynumber: 2.1 Consensus size: 46
32440100 TCTCTTCTCT
32440110 TTTAATTAGAAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
1 TTTAATTAGAAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
*
32440156 TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
1 TTTAATTAGAAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
32440202 TTT
1 TTT
32440205 CTATCTTTGT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.35, C:0.02, G:0.22, T:0.41
Consensus pattern (46 bp):
TTTAATTAGAAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
Found at i:32445097 original size:13 final size:13
Alignment explanation
Indices: 32445068--32445110 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
32445058 TTAGTTATAA
32445068 ATTTTTATAACATAT
1 ATTTTTAT-A-ATAT
32445083 ATTTTTATAATAT
1 ATTTTTATAATAT
* *
32445096 ATATTTGTAATAT
1 ATTTTTATAATAT
32445109 AT
1 AT
32445111 ATAAATTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 17 0.65
14 1 0.04
15 8 0.31
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (13 bp):
ATTTTTATAATAT
Found at i:32445110 original size:15 final size:15
Alignment explanation
Indices: 32445063--32445127 Score: 67
Period size: 15 Copynumber: 4.2 Consensus size: 15
32445053 AAATTTTAGT
* *
32445063 TATAAATTTTTATAA
1 TATATATTTTAATAA
* *
32445078 CATATATTTTTATAA
1 TATATATTTTAATAA
32445093 TATATATTTGTAATATA
1 TATATATTT-TAATA-A
*
32445110 TATAAATTTTAATAA
1 TATATATTTTAATAA
32445125 TAT
1 TAT
32445128 TTTTTACGTA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
15 25 0.58
16 9 0.21
17 9 0.21
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (15 bp):
TATATATTTTAATAA
Found at i:32445162 original size:10 final size:9
Alignment explanation
Indices: 32445149--32445234 Score: 66
Period size: 10 Copynumber: 9.1 Consensus size: 9
32445139 GCCATTAATA
32445149 TATATTATTT
1 TATA-TATTT
32445159 TATATATATT
1 TATATAT-TT
*
32445169 TCTATGATTT
1 TATAT-ATTT
32445179 TATATATTT
1 TATATATTT
*
32445188 T-TATATAT
1 TATATATTT
*
32445196 TATAGGATTT
1 TATA-TATTT
32445206 TATATATTT
1 TATATATTT
* * *
32445215 AAATAGAATT
1 -TATATATTT
32445225 TATATATTT
1 TATATATTT
32445234 T
1 T
32445235 TCAAAATCAT
Statistics
Matches: 59, Mismatches: 12, Indels: 11
0.72 0.15 0.13
Matches are distributed among these distances:
8 7 0.12
9 21 0.36
10 29 0.49
11 2 0.03
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.59
Consensus pattern (9 bp):
TATATATTT
Found at i:32445212 original size:27 final size:29
Alignment explanation
Indices: 32445149--32445214 Score: 91
Period size: 27 Copynumber: 2.3 Consensus size: 29
32445139 GCCATTAATA
* *
32445149 TATATTATTTTATATATATTTCTATGATTT
1 TATA-TATTTTATATATATTTATAGGATTT
32445179 TATATATTTT-TATATA-TTATAGGATTT
1 TATATATTTTATATATATTTATAGGATTT
32445206 TATATATTT
1 TATATATTT
32445215 AAATAGAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
27 18 0.53
28 6 0.18
29 6 0.18
30 4 0.12
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.62
Consensus pattern (29 bp):
TATATATTTTATATATATTTATAGGATTT
Found at i:32459301 original size:25 final size:25
Alignment explanation
Indices: 32459267--32459326 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
32459257 CATTTTACAA
32459267 CTCGTGTGAGCATTTACAATCACAG
1 CTCGTGTGAGCATTTACAATCACAG
**
32459292 CTCGTGTGAGCATTTACCGTCACAG
1 CTCGTGTGAGCATTTACAATCACAG
*
32459317 CTTGTGTGAG
1 CTCGTGTGAG
32459327 TATTGTTCCA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.30
Consensus pattern (25 bp):
CTCGTGTGAGCATTTACAATCACAG
Found at i:32459429 original size:26 final size:26
Alignment explanation
Indices: 32459400--32459457 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 26
32459390 ATGGTTATTC
*
32459400 GAAATGGATA-TATGAAAT-AAACATTT
1 GAAATGGATACT-TGAAATGAAA-ATGT
32459426 GAAATGGATACTTGAAATGAAAATGT
1 GAAATGGATACTTGAAATGAAAATGT
32459452 GAAATG
1 GAAATG
32459458 TGAAATGGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.48, C:0.03, G:0.21, T:0.28
Consensus pattern (26 bp):
GAAATGGATACTTGAAATGAAAATGT
Found at i:32464976 original size:26 final size:24
Alignment explanation
Indices: 32464941--32465020 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 24
32464931 TATGGCCATA
32464941 CGAGCATGTAATTGGAAAGCTCTTT
1 CGAGCATGTAA-TGGAAAGCTCTTT
* *
32464966 CGAGCCATGTAATGGGAAGCTCATGT
1 CGAG-CATGTAATGGAAAGCTC-TTT
*
32464992 -GAGC-TGTATAATGGAAAGCTCTTA
1 CGAGCATG--TAATGGAAAGCTCTTT
32465016 CGAGC
1 CGAGC
32465021 CAATTATCAG
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
23 2 0.04
24 2 0.04
25 32 0.71
26 9 0.20
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (24 bp):
CGAGCATGTAATGGAAAGCTCTTT
Found at i:32465093 original size:25 final size:26
Alignment explanation
Indices: 32464967--32465172 Score: 153
Period size: 25 Copynumber: 8.2 Consensus size: 26
32464957 AAGCTCTTTC
* *
32464967 GAGCCATGTAAT-GGGAAGCTCATGT
1 GAGCCATATAATCGGGAAGCTCATGA
** * *
32464992 GAGCTGTATAAT-GGAAAGCTC-TTA
1 GAGCCATATAATCGGGAAGCTCATGA
* * *
32465016 CGAGCCA-ATTATCAGGAAGCTCATGT
1 -GAGCCATATAATCGGGAAGCTCATGA
*
32465042 GAGCCATAT-ATCGGGAAGCTCGTGA
1 GAGCCATATAATCGGGAAGCTCATGA
*
32465067 GAGCCATATAAT-GGGAAGCTCAAGA
1 GAGCCATATAATCGGGAAGCTCATGA
* *
32465092 GAGCTAT-TAATCAGGAAGCTCATGA
1 GAGCCATATAATCGGGAAGCTCATGA
* * * **
32465117 GAGCTAAATAA-CGGCAAGCTTGTGA
1 GAGCCATATAATCGGGAAGCTCATGA
*
32465142 GAGCCA-AGT-ATCGGGAAGCTCGTGA
1 GAGCCATA-TAATCGGGAAGCTCATGA
32465167 GAGCCA
1 GAGCCA
32465173 AATACCTGGA
Statistics
Matches: 143, Mismatches: 29, Indels: 18
0.75 0.15 0.09
Matches are distributed among these distances:
24 11 0.08
25 124 0.87
26 8 0.06
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.21
Consensus pattern (26 bp):
GAGCCATATAATCGGGAAGCTCATGA
Found at i:32480864 original size:27 final size:27
Alignment explanation
Indices: 32480834--32480940 Score: 92
Period size: 27 Copynumber: 4.0 Consensus size: 27
32480824 AAACGACCGT
* *
32480834 AATACCCTCAAAGGATAAAATTACTGA
1 AATACCCTCGAAGGGTAAAATTACTGA
* * **
32480861 AATACCTTCGATGGGTAAAATTACCAA
1 AATACCCTCGAAGGGTAAAATTACTGA
*
32480888 AATACCCCCGAAGGGTAAAATTA-TCGA
1 AATACCCTCGAAGGGTAAAATTACT-GA
** *
32480915 AATAATCTC-ATAGGGTAAAATGACTG
1 AATACCCTCGA-AGGGTAAAATTACTG
32480941 TTATACCCCT
Statistics
Matches: 62, Mismatches: 15, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
26 1 0.02
27 60 0.97
28 1 0.02
ACGTcount: A:0.43, C:0.18, G:0.16, T:0.23
Consensus pattern (27 bp):
AATACCCTCGAAGGGTAAAATTACTGA
Found at i:32482446 original size:39 final size:40
Alignment explanation
Indices: 32482403--32482486 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
32482393 ACCTGAATAT
* *
32482403 AATAAATAT-ATATTTTTTATTTTTA-TTTTTTAATTTTAA
1 AATAAATATAATA-TATATATTTTTATTTTTTTAATTTTAA
* * *
32482442 AATAATTTTAATATATATATTTTTATTTTTTTATTTTTAA
1 AATAAATATAATATATATATTTTTATTTTTTTAATTTTAA
32482482 AATAA
1 AATAA
32482487 TTTTTTAATG
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
39 17 0.45
40 21 0.55
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (40 bp):
AATAAATATAATATATATATTTTTATTTTTTTAATTTTAA
Found at i:32483197 original size:13 final size:13
Alignment explanation
Indices: 32483163--32483197 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
32483153 AGTTTCTTCT
*
32483163 AAAAAAATTTGAA
1 AAAAAAATTCGAA
*
32483176 AAAAGAATTCGAA
1 AAAAAAATTCGAA
32483189 AAAAAAATT
1 AAAAAAATT
32483198 ATTTCCATTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.69, C:0.03, G:0.09, T:0.20
Consensus pattern (13 bp):
AAAAAAATTCGAA
Found at i:32491164 original size:18 final size:19
Alignment explanation
Indices: 32491123--32491166 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
32491113 ATTTTAAAAA
32491123 AAAAAGGTTAGTTGGCTAT
1 AAAAAGGTTAGTTGGCTAT
32491142 AAAAAGGTTAGTTGGCTAT
1 AAAAAGGTTAGTTGGCTAT
32491161 AAAAAG
1 AAAAAG
32491167 CCACACCCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.43, C:0.05, G:0.25, T:0.27
Consensus pattern (19 bp):
AAAAAGGTTAGTTGGCTAT
Found at i:32494215 original size:80 final size:81
Alignment explanation
Indices: 32494081--32494251 Score: 229
Period size: 80 Copynumber: 2.1 Consensus size: 81
32494071 CCCCAAAATA
* * * *
32494081 GGTAAAATGACCAAAATACCCCTATATGGTAGAATTATCGAAGTACCCCTATAGGGTAAAATGAC
1 GGTAAAATGACCAAAATACCCCTATAGGGTAGAATGACCGAAATACCCCTATAGGGTAAAATGAC
32494146 CGAAATACCCCCATAG
66 CGAAATACCCCCATAG
* * * *
32494162 GGTAAAATGACCGAAATACTCC-GTAGGGTAGAATGACCGAAATAACTCC-ATAGGGTAAAATGA
1 GGTAAAATGACCAAAATACCCCTATAGGGTAGAATGACCGAAAT-ACCCCTATAGGGTAAAATGA
* *
32494225 TCGAAATACCCCTATAG
65 CCGAAATACCCCCATAG
32494242 GGTAAAATGA
1 GGTAAAATGA
32494252 TTGTTGTACA
Statistics
Matches: 79, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
80 55 0.70
81 24 0.30
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.20
Consensus pattern (81 bp):
GGTAAAATGACCAAAATACCCCTATAGGGTAGAATGACCGAAATACCCCTATAGGGTAAAATGAC
CGAAATACCCCCATAG
Found at i:32494252 original size:27 final size:27
Alignment explanation
Indices: 32494081--32494251 Score: 211
Period size: 27 Copynumber: 6.4 Consensus size: 27
32494071 CCCCAAAATA
* *
32494081 GGTAAAATGACCAAAATACCCCTATAT
1 GGTAAAATGACCGAAATACCCCTATAG
* * * *
32494108 GGTAGAATTATCGAAGTACCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
*
32494135 GGTAAAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* *
32494162 GGTAAAATGACCGAAATACTCC-GTAG
1 GGTAAAATGACCGAAATACCCCTATAG
* *
32494188 GGTAGAATGACCGAAATAACTCC-ATAG
1 GGTAAAATGACCGAAAT-ACCCCTATAG
*
32494215 GGTAAAATGATCGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
32494242 GGTAAAATGA
1 GGTAAAATGA
32494252 TTGTTGTACA
Statistics
Matches: 124, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 23 0.19
27 101 0.81
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCTATAG
Found at i:32498198 original size:32 final size:31
Alignment explanation
Indices: 32498140--32498270 Score: 103
Period size: 30 Copynumber: 4.3 Consensus size: 31
32498130 TGTGTATACA
* *
32498140 AATATATATATTAATGG-G-TGTTATATATAT
1 AATATATATATGAGTGGAGTTG-TATATATAT
32498170 AATATATATATGAG-GGAGTTGGTA-ATATA-
1 AATATATATATGAGTGGAGTT-GTATATATAT
* * *
32498199 CATATATATATGAGTGGGGTTGTATCTATAT
1 AATATATATATGAGTGGAGTTGTATATATAT
* * * *
32498230 ACATATATATATGTG-GGTGATTATACATATAT
1 A-ATATATATATGAGTGGAG-TTGTATATATAT
32498262 AATATATAT
1 AATATATAT
32498271 GCATGTTTCT
Statistics
Matches: 82, Mismatches: 11, Indels: 15
0.76 0.10 0.14
Matches are distributed among these distances:
29 18 0.22
30 27 0.33
31 14 0.17
32 23 0.28
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (31 bp):
AATATATATATGAGTGGAGTTGTATATATAT
Found at i:32512190 original size:10 final size:10
Alignment explanation
Indices: 32512172--32512201 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
32512162 TTTTTAATCC
32512172 TTCATTACCA
1 TTCATTACCA
*
32512182 TTTATTACCA
1 TTCATTACCA
32512192 TTCATTACCA
1 TTCATTACCA
32512202 AAAGTCCCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.30, C:0.27, G:0.00, T:0.43
Consensus pattern (10 bp):
TTCATTACCA
Found at i:32520094 original size:15 final size:15
Alignment explanation
Indices: 32520060--32520094 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
32520050 ACCCGAATCT
32520060 ATTTTTAGGTAAGAA
1 ATTTTTAGGTAAGAA
*
32520075 ATTTTGAGG-AAGAA
1 ATTTTTAGGTAAGAA
32520089 ATTTTT
1 ATTTTT
32520095 TAAGGGGGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.43
Consensus pattern (15 bp):
ATTTTTAGGTAAGAA
Found at i:32528323 original size:16 final size:16
Alignment explanation
Indices: 32528302--32528332 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32528292 TCAAAAAGAT
32528302 AAATTAAAAACTAAAA
1 AAATTAAAAACTAAAA
*
32528318 AAATTAAAAATTAAA
1 AAATTAAAAACTAAA
32528333 CTAAACAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (16 bp):
AAATTAAAAACTAAAA
Found at i:32528798 original size:8 final size:8
Alignment explanation
Indices: 32528787--32528825 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
32528777 CAAAAACTTA
32528787 AAAATTAT
1 AAAATTAT
32528795 AAAATTAT
1 AAAATTAT
32528803 AAAA--A-
1 AAAATTAT
32528808 AAAATTAT
1 AAAATTAT
32528816 AAAATTAT
1 AAAATTAT
32528824 AA
1 AA
32528826 GAAATATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
5 4 0.14
6 1 0.04
7 1 0.04
8 22 0.79
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (8 bp):
AAAATTAT
Found at i:32528811 original size:21 final size:21
Alignment explanation
Indices: 32528786--32528825 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
32528776 ACAAAAACTT
32528786 AAAAATTATAAAATTATAAAA
1 AAAAATTATAAAATTATAAAA
32528807 AAAAATTATAAAATTATAA
1 AAAAATTATAAAATTATAA
32528826 GAAATATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (21 bp):
AAAAATTATAAAATTATAAAA
Found at i:32528813 original size:13 final size:13
Alignment explanation
Indices: 32528795--32528819 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32528785 TAAAAATTAT
32528795 AAAATTATAAAAA
1 AAAATTATAAAAA
32528808 AAAATTATAAAA
1 AAAATTATAAAA
32528820 TTATAAGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
AAAATTATAAAAA
Found at i:32528837 original size:19 final size:20
Alignment explanation
Indices: 32528786--32528838 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 20
32528776 ACAAAAACTT
32528786 AAAAAT-TATAAAATTATAA
1 AAAAATATATAAAATTATAA
*
32528805 AAAAAAATTATAAAATTAT-A
1 AAAAATA-TATAAAATTATAA
*
32528825 AGAAATATATAAAA
1 AAAAATATATAAAA
32528839 AAATCAATAC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 12 0.41
20 6 0.21
21 11 0.38
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (20 bp):
AAAAATATATAAAATTATAA
Found at i:32528839 original size:30 final size:28
Alignment explanation
Indices: 32528778--32528842 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 28
32528768 AAGACATCAC
* *
32528778 AAAAACTTAAAAATTATAAAATTATAAA
1 AAAAAATTAAAAATTATAAAAATATAAA
*
32528806 AAAAAATTATAAAATTATAAGAAATATATA
1 AAAAAATTA-AAAATTATAA-AAATATAAA
32528836 AAAAAAT
1 AAAAAAT
32528843 CAATACCTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
28 8 0.25
29 10 0.31
30 14 0.44
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.28
Consensus pattern (28 bp):
AAAAAATTAAAAATTATAAAAATATAAA
Found at i:32535910 original size:26 final size:26
Alignment explanation
Indices: 32535881--32535930 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
32535871 TGGTAAAATG
* * *
32535881 AAATGTTTAGATGAAACAATTATACA
1 AAATGGTTAGAGGAAAAAATTATACA
*
32535907 AAATGGTTATAGGAAAAAATTATA
1 AAATGGTTAGAGGAAAAAATTATA
32535931 TGGAATGATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.52, C:0.04, G:0.14, T:0.30
Consensus pattern (26 bp):
AAATGGTTAGAGGAAAAAATTATACA
Found at i:32537371 original size:19 final size:18
Alignment explanation
Indices: 32537328--32537382 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 18
32537318 CATATTTCAA
32537328 ATAGGTTCACACATGC--
1 ATAGGTTCACACATGCAT
* *
32537344 ATCGGTTCACATATAGCAT
1 ATAGGTTCACACAT-GCAT
32537363 ATAGGTTCACACATGCAT
1 ATAGGTTCACACATGCAT
32537381 AT
1 AT
32537383 TGGATCTTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
16 12 0.38
17 2 0.06
18 6 0.19
19 12 0.38
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (18 bp):
ATAGGTTCACACATGCAT
Found at i:32537595 original size:18 final size:18
Alignment explanation
Indices: 32537574--32537617 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
32537564 GCTTATATAC
32537574 ATAGGCTCAAATAAATGA
1 ATAGGCTCAAATAAATGA
*
32537592 ATAGGCTCACATAAATGA
1 ATAGGCTCAAATAAATGA
*
32537610 ATATGCTC
1 ATAGGCTC
32537618 GCATGCATAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.25
Consensus pattern (18 bp):
ATAGGCTCAAATAAATGA
Found at i:32540408 original size:9 final size:9
Alignment explanation
Indices: 32540394--32540443 Score: 63
Period size: 9 Copynumber: 6.0 Consensus size: 9
32540384 AGTTTTCTTG
32540394 TAATTTTTA
1 TAATTTTTA
32540403 TAATTTTTA
1 TAATTTTTA
*
32540412 TAA-TTTTG
1 TAATTTTTA
32540420 TAATTTTTA
1 TAATTTTTA
32540429 T-A-TTTTA
1 TAATTTTTA
32540436 T-ATTTTTA
1 TAATTTTTA
32540444 AAAAATTTAG
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
7 7 0.19
8 13 0.35
9 17 0.46
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (9 bp):
TAATTTTTA
Found at i:32540409 original size:26 final size:26
Alignment explanation
Indices: 32540391--32540442 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
32540381 TTTAGTTTTC
32540391 TTGTAATTTTTATAATTTTTATAATT
1 TTGTAATTTTTATAATTTTTATAATT
*
32540417 TTGTAATTTTTAT-A-TTTTATATTT
1 TTGTAATTTTTATAATTTTTATAATT
32540441 TT
1 TT
32540443 AAAAAATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 11 0.44
25 1 0.04
26 13 0.52
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (26 bp):
TTGTAATTTTTATAATTTTTATAATT
Found at i:32540418 original size:17 final size:16
Alignment explanation
Indices: 32540398--32540443 Score: 67
Period size: 17 Copynumber: 2.9 Consensus size: 16
32540388 TTCTTGTAAT
32540398 TTTTATAATTTTTATAA
1 TTTTATAATTTTTAT-A
*
32540415 TTTTGTAATTTTTATA
1 TTTTATAATTTTTATA
32540431 TTTTAT-ATTTTTA
1 TTTTATAATTTTTA
32540444 AAAAATTTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
15 7 0.26
16 6 0.22
17 14 0.52
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (16 bp):
TTTTATAATTTTTATA
Found at i:32540819 original size:25 final size:26
Alignment explanation
Indices: 32540778--32540826 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
32540768 CTTTTTTATA
32540778 TGAAGAAACAATAATCTCATTTTTGT
1 TGAAGAAACAATAATCTCATTTTTGT
* *
32540804 TGAA-AAATAATAATCTTATTTTT
1 TGAAGAAACAATAATCTCATTTTT
32540827 CTCATGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.43
Consensus pattern (26 bp):
TGAAGAAACAATAATCTCATTTTTGT
Found at i:32544514 original size:19 final size:19
Alignment explanation
Indices: 32544440--32544511 Score: 117
Period size: 19 Copynumber: 3.7 Consensus size: 19
32544430 AATATTCAAG
32544440 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
32544459 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
32544478 GATATATGCAATCTTGGATAT
1 G--ATATGCAATCTTAGATAT
32544499 GATATGCAATCTT
1 GATATGCAATCTT
32544512 GGAAGATATG
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
19 32 0.64
21 18 0.36
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:32550183 original size:6 final size:6
Alignment explanation
Indices: 32550169--32550203 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
32550159 AAAATATTTC
*
32550169 AAAAA- AAAAAG AAAAAG AAAAAG AAAAAG CAAAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
32550204 GGAGAGGCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.83, C:0.03, G:0.14, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:32551548 original size:43 final size:43
Alignment explanation
Indices: 32551501--32551636 Score: 130
Period size: 43 Copynumber: 3.1 Consensus size: 43
32551491 AGCAGATCGG
*
32551501 AGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGA
1 AGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTAGA
* * * *** * * * *
32551544 AGATAGCAGATCTTGCCTTCCTACATCGACAGTGAAGCAGATCA-A
1 AGATACCAG-CCTTGCCTCCCTGGGTTG-TAGTGGAGCAGGT-AGA
*
32551589 AGATACCAGCCTTGCCTCCTTGGGTTGTAGTGGAGCAGGTAGA
1 AGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTAGA
32551632 AGATA
1 AGATA
32551637 GCTGATAGAG
Statistics
Matches: 67, Mismatches: 22, Indels: 8
0.69 0.23 0.08
Matches are distributed among these distances:
42 1 0.01
43 24 0.36
44 23 0.34
45 19 0.28
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (43 bp):
AGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTAGA
Found at i:32551581 original size:88 final size:88
Alignment explanation
Indices: 32551444--32551638 Score: 293
Period size: 88 Copynumber: 2.2 Consensus size: 88
32551434 GGTTTGCAAC
* * * * **
32551444 GGAGTAGGTTGAAAATAACAGATCTTGCCTTCCTACACTGACGGCGAAGCAGATCGGAGATACCA
1 GGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTACACTGACAGCGAAGCAGATCAAAGATACCA
32551509 GCCTTGCCTCCCTGGGTTGTAGT
66 GCCTTGCCTCCCTGGGTTGTAGT
*
32551532 GGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTACA-TCGACAGTGAAGCAGATCAAAGATACC
1 GGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTACACT-GACAGCGAAGCAGATCAAAGATACC
*
32551596 AGCCTTGCCTCCTTGGGTTGTAGT
65 AGCCTTGCCTCCCTGGGTTGTAGT
*
32551620 GGAGCAGGTAGAAGATAGC
1 GGAGCAGGTTGAAGATAGC
32551639 TGATAGAGGG
Statistics
Matches: 97, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
87 1 0.01
88 96 0.99
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (88 bp):
GGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTACACTGACAGCGAAGCAGATCAAAGATACCA
GCCTTGCCTCCCTGGGTTGTAGT
Found at i:32557470 original size:88 final size:88
Alignment explanation
Indices: 32557030--32557452 Score: 657
Period size: 88 Copynumber: 4.8 Consensus size: 88
32557020 ACTAGTATCA
* * *
32557030 ATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTG
32557095 GGTTGTAGTGGAGCAGGTTGAAG
66 GGTTGTAGTGGAGCAGGTTGAAG
* ** * *
32557118 ATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATTGAAGATACCAGCCTTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTG
*
32557183 GGTTGTAGTGGAGCAGATTGAAG
66 GGTTGTAGTGGAGCAGGTTGAAG
* * *
32557206 ATAGCAGATCTTGCCTTCCTGTACCGACAATGAAGTAGATCGAAGATACCAGCCTTGCCTCCCTA
1 ATAGCAGATCTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTG
* *
32557271 GGTCGTAGTGGAGTAGGTTGAAG
66 GGTTGTAGTGGAGCAGGTTGAAG
* * *
32557294 ATAGCAGATCTTGCCTTCCTATACCGACAGTGAAGCAGATCGAAGATACCAACCTTGCCTCTCTG
1 ATAGCAGATCTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTG
*
32557359 GGTTGTAGTTGAGCAGGTTGAAG
66 GGTTGTAGTGGAGCAGGTTGAAG
* * *
32557382 ATAGCAGATTTTGCCTTCCTGTACCGACAGTGAAGCAGATCAAAGATACCAGCCTTGCCTCCCTA
1 ATAGCAGATCTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTG
32557447 GGTTGT
66 GGTTGT
32557453 CGTGAAGTAG
Statistics
Matches: 306, Mismatches: 29, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 306 1.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (88 bp):
ATAGCAGATCTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTG
GGTTGTAGTGGAGCAGGTTGAAG
Found at i:32557503 original size:44 final size:44
Alignment explanation
Indices: 32557453--32557839 Score: 467
Period size: 44 Copynumber: 8.8 Consensus size: 44
32557443 CCTAGGTTGT
* * * *
32557453 CGTGAAGTAGATCGAAGAAAGCAAATCTTGTCTTCATGTATTGG
1 CGTGAAGTAGATCAAAGATAGTAGATCTTGTCTTCATGTATTGG
*
32557497 CGTGAAGTAGATCAAAGATAGTAGATCTTGTCTTCATATATTGG
1 CGTGAAGTAGATCAAAGATAGTAGATCTTGTCTTCATGTATTGG
* * *** *
32557541 CATGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCCATACTGG
1 CGTGAAGTAGATCAAAGATAGTAGATCTTGTCTTCATGTATTGG
* * *
32557585 TGGCGAAGTAGATCGAAA-AAAGTAGATCTTGTCTTCATGTATTGG
1 -CGTGAAGTAGATC-AAAGATAGTAGATCTTGTCTTCATGTATTGG
*
32557630 CGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGG
1 CGTGAAGTAGATCAAAGATAGTAGATCTTGTCTTCATGTATTGG
* *
32557674 CGTGAAGTAGATCAAAGATAGTAGATCTTGTCTTTC-TATACTGG
1 CGTGAAGTAGATCAAAGATAGTAGATCTTGTC-TTCATGTATTGG
* *
32557718 CGGCGAAGTAGATCAAAGAAAGTAGATCTTGTCTTCATGTATTGG
1 C-GTGAAGTAGATCAAAGATAGTAGATCTTGTCTTCATGTATTGG
* * * *
32557763 C--GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATCGG
1 CGTGAAGTAGATCAAAGATAGTAGATCTTGTCTTCATGTATTGG
* * * *
32557805 CATGAAATAGATCAAAGGTAGCAGATCTTGTCTTC
1 CGTGAAGTAGATCAAAGATAGTAGATCTTGTCTTC
32557840 CCGTACTGGT
Statistics
Matches: 298, Mismatches: 37, Indels: 16
0.85 0.11 0.05
Matches are distributed among these distances:
42 39 0.13
43 3 0.01
44 183 0.61
45 71 0.24
46 2 0.01
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.30
Consensus pattern (44 bp):
CGTGAAGTAGATCAAAGATAGTAGATCTTGTCTTCATGTATTGG
Found at i:32557561 original size:176 final size:174
Alignment explanation
Indices: 32557030--32557516 Score: 557
Period size: 176 Copynumber: 2.8 Consensus size: 174
32557020 ACTAGTATCA
* * * *
32557030 ATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCAAAGATACCAGCCTTGCCTCCCTA
* * * * * * * **
32557095 GGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATTG
66 GGTTGTAGTGAAGTAGATCGAAGATAGCAGATCTTGCCTTCATGTATTGACAGTGAAGCAGATCA
* *
32557160 AAGATACCAG-CCTTGCCTCCCTGGGTTGTAGTGGAGCAGATTGAAG
131 AAGATACCAGACCTTGCCT-TCTGGGTTGGA-T-GAGCAGATTGAAG
** * *
32557206 ATAGCAGATCTTGCCTTCCTGTACCGACAATGAAGTAGATCGAAGATACCAGCCTTGCCTCCCTA
1 ATAGCAGATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCAAAGATACCAGCCTTGCCTCCCTA
* * * * * * ** *
32557271 GGTCGTAGTGGAGTAGGTTGAAGATAGCAGATCTTGCCTTCCTATACCGACAGTGAAGCAGATCG
66 GGTTGTAGTGAAGTAGATCGAAGATAGCAGATCTTGCCTTCATGTATTGACAGTGAAGCAGATCA
* *
32557336 AAGATACCA-ACCTTGCCTCTCTGGGTTGTAGTTGAGCAGGTTGAAG
131 AAGATACCAGACCTTGCCT-TCTGGGTTG--GATGAGCAGATTGAAG
* *
32557382 ATAGCAGATTTTGCCTTCCTGTACCGACAGTGAAGCAGATCAAAGATACCAGCCTTGCCTCCCTA
1 ATAGCAGATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCAAAGATACCAGCCTTGCCTCCCTA
* * * * * *
32557447 GGTTGTCGTGAAGTAGATCGAAGAAAGCAAATCTTGTCTTCATGTATTGGC-GTGAAGTAGATCA
66 GGTTGTAGTGAAGTAGATCGAAGATAGCAGATCTTGCCTTCATGTATTGACAGTGAAGCAGATCA
32557511 AAGATA
131 AAGATA
32557517 GTAGATCTTG
Statistics
Matches: 271, Mismatches: 37, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
175 17 0.06
176 253 0.93
177 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (174 bp):
ATAGCAGATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCAAAGATACCAGCCTTGCCTCCCTA
GGTTGTAGTGAAGTAGATCGAAGATAGCAGATCTTGCCTTCATGTATTGACAGTGAAGCAGATCA
AAGATACCAGACCTTGCCTTCTGGGTTGGATGAGCAGATTGAAG
Found at i:32557600 original size:264 final size:263
Alignment explanation
Indices: 32557059--32557870 Score: 727
Period size: 264 Copynumber: 3.1 Consensus size: 263
32557049 TGCATCGACA
* * *
32557059 GCGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCA
1 GCGAAGCAGATCGAAGATACCAACCTTGCCTCTCTGGGTTGTAGTTGAGCAGGTTGAAGATAGCA
* * ** *
32557124 GATCTTGCCTTCCTGCATTGACAGCGAAGCAGATTGAAGATACCAGCCTTGCCTCCCTGGGTTGT
66 GATCTTGCCTTCCTGTATTGACAGTGAAGCAGATCAAAGATACCAGCCTTGCCTCCCTAGGTTGT
* * * * * * * ** *
32557189 AGTGGAGCAGATTGAAGATAGCAGATCTTGCCTTCCTGTACCGACAATGAAGTAGATCGAAGATA
131 CGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC--TGAAGTAGATCGAAGATA
* * * * * ** * * * * * * *
32557254 CCAG-CCTTGCCTCCCTA-GGTCGTAGTGGAGTAGGTTGAAGATAGCAGATCTTGCCTTCCTATA
194 GCAGATCTTGTCTTCATATATTGGCA-TGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATA
* ***
32557317 CCGACA
258 CTGGTG
*
32557323 GTGAAGCAGATCGAAGATACCAACCTTGCCTCTCTGGGTTGTAGTTGAGCAGGTTGAAGATAGCA
1 GCGAAGCAGATCGAAGATACCAACCTTGCCTCTCTGGGTTGTAGTTGAGCAGGTTGAAGATAGCA
* **
32557388 GATTTTGCCTTCCTGTACCGACAGTGAAGCAGATCAAAGATACCAGCCTTGCCTCCCTAGGTTGT
66 GATCTTGCCTTCCTGTATTGACAGTGAAGCAGATCAAAGATACCAGCCTTGCCTCCCTAGGTTGT
* *
32557453 CGTGAAGTAGATCGAAGAAAGCAAATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAG
131 CGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC-TGAAGTAGATCGAAGATAG
* *
32557518 TAGATCTTGTCTTCATATATTGGCATGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCCATACT
195 CAGATCTTGTCTTCATATATTGGCATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACT
32557583 GGTG
260 GGTG
* * * ** * * ** ** * * **
32557587 GCGAAGTAGATCGAAAAAAGTAGATCTTGTCT-TCATGTATTGGCG-TGAAGTAGATCAAAGATA
1 GCGAAGCAGATCGAAGATACCA-ACCTTGCCTCTC-TGGGTTGTAGTTG-AGCAGGTTGAAGATA
* * * * ** * * ** **
32557650 GCAGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATCAAAGATAGTAGATCTTGTCTTTCTATA
63 GCAGATCTTGCCTTCCTGTATTGACAGTGAAGCAGATCAAAGATACCAG-CCTTGCCTCCCTAGG
* * * * *
32557714 CTGGCGGCGAAGTAGATCAAAGAAAGTAGATCTTGTCTTCATGTATTGGC-GAAGTAGATCGAAG
127 TTGTC-GTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCTGAAGTAGATCGAAG
* * * * * * *
32557778 AAAGCAGATCTTGTCTTCATGTATCGGCATGAAATAGATCAAAGGTAGCAGATCTTGTCTTCCCG
191 ATAGCAGATCTTGTCTTCATATATTGGCATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCA
32557843 TACTGGTG
256 TACTGGTG
* * *
32557851 GCGAAGTAGACCAAAGATAC
1 GCGAAGCAGATCGAAGATAC
32557871 AAGTCTTATC
Statistics
Matches: 444, Mismatches: 97, Indels: 14
0.80 0.17 0.03
Matches are distributed among these distances:
263 19 0.04
264 327 0.74
265 58 0.13
266 40 0.09
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (263 bp):
GCGAAGCAGATCGAAGATACCAACCTTGCCTCTCTGGGTTGTAGTTGAGCAGGTTGAAGATAGCA
GATCTTGCCTTCCTGTATTGACAGTGAAGCAGATCAAAGATACCAGCCTTGCCTCCCTAGGTTGT
CGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCTGAAGTAGATCGAAGATAGC
AGATCTTGTCTTCATATATTGGCATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTG
GTG
Found at i:32557621 original size:89 final size:89
Alignment explanation
Indices: 32557455--32557867 Score: 453
Period size: 89 Copynumber: 4.7 Consensus size: 89
32557445 TAGGTTGTCG
* * * * * * * *
32557455 TGAAGTAGATCGAAGAAAGCAAATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGATAGT
1 TGAAGTAGATCAAAGATAGCAGATCTTGTCTTCACGTACTGGTGGCGAAGTAGATCAAAGAAAGT
32557519 AGATCTTGTCTTCATATATTGGCA
66 AGATCTTGTCTTCATATATTGGCA
* * * *
32557543 TGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAA-AAAG
1 TGAAGTAGATCAAAGATAGCAGATCTTGTCTTCACGTACTGGTGGCGAAGTAGATC-AAAGAAAG
* *
32557607 TAGATCTTGTCTTCATGTATTGGCG
65 TAGATCTTGTCTTCATATATTGGCA
* * * * *
32557632 TGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGATAGT
1 TGAAGTAGATCAAAGATAGCAGATCTTGTCTTCACGTACTGGTGGCGAAGTAGATCAAAGAAAGT
* *
32557696 AGATCTTGTCTTTC-TATACTGGCGG
66 AGATCTTGTC-TTCATATATTGGC-A
* * * * * *
32557721 CGAAGTAGATCAAAGAAAGTAGATCTTGTCTTCATGTA-T--TGGCGAAGTAGATCGAAGAAAGC
1 TGAAGTAGATCAAAGATAGCAGATCTTGTCTTCACGTACTGGTGGCGAAGTAGATCAAAGAAAGT
* *
32557783 AGATCTTGTCTTCATGTATCGGCA
66 AGATCTTGTCTTCATATATTGGCA
* * * *
32557807 TGAAATAGATCAAAGGTAGCAGATCTTGTCTTCCCGTACTGGTGGCGAAGTAGACCAAAGA
1 TGAAGTAGATCAAAGATAGCAGATCTTGTCTTCACGTACTGGTGGCGAAGTAGATCAAAGA
32557868 TACAAGTCTT
Statistics
Matches: 271, Mismatches: 44, Indels: 19
0.81 0.13 0.06
Matches are distributed among these distances:
86 34 0.13
87 37 0.14
88 68 0.25
89 129 0.48
90 3 0.01
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (89 bp):
TGAAGTAGATCAAAGATAGCAGATCTTGTCTTCACGTACTGGTGGCGAAGTAGATCAAAGAAAGT
AGATCTTGTCTTCATATATTGGCA
Found at i:32557694 original size:133 final size:133
Alignment explanation
Indices: 32557456--32557860 Score: 627
Period size: 133 Copynumber: 3.1 Consensus size: 133
32557446 AGGTTGTCGT
* * * *
32557456 GAAGTAGATCGAAGAAAGCAAATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAG
1 GAAGTAGATCGAAAAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAG
* *
32557521 ATCTTGTCTTCATATATTGGCATGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCCATACTGGT
66 ATCTTGTCTTCATGTATTGGCATGAAGTAGATCAAAGATAGTAGATCTTGTCTTCCCATACTGGT
32557586 GGC
131 GGC
32557589 GAAGTAGATCGAAAAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAG
1 GAAGTAGATCGAAAAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAG
* * * *
32557654 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGATCTTGTCTTTCTATACTGGC
66 ATCTTGTCTTCATGTATTGGCATGAAGTAGATCAAAGATAGTAGATCTTGTCTTCCCATACTGGT
32557719 GGC
131 GGC
* *
32557722 GAAGTAGATC-AAAGAAAGTAGATCTTGTCTTCATGTATTGGC--GAAGTAGATCGAAGAAAGCA
1 GAAGTAGATCGAAA-AAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCA
* * * * *
32557784 GATCTTGTCTTCATGTATCGGCATGAAATAGATCAAAGGTAGCAGATCTTGTCTTCCCGTACTGG
65 GATCTTGTCTTCATGTATTGGCATGAAGTAGATCAAAGATAGTAGATCTTGTCTTCCCATACTGG
32557849 TGGC
130 TGGC
32557853 GAAGTAGA
1 GAAGTAGA
32557861 CCAAAGATAC
Statistics
Matches: 250, Mismatches: 21, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
131 86 0.34
132 3 0.01
133 161 0.64
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (133 bp):
GAAGTAGATCGAAAAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAG
ATCTTGTCTTCATGTATTGGCATGAAGTAGATCAAAGATAGTAGATCTTGTCTTCCCATACTGGT
GGC
Found at i:32557905 original size:175 final size:177
Alignment explanation
Indices: 32557455--32557885 Score: 474
Period size: 175 Copynumber: 2.4 Consensus size: 177
32557445 TAGGTTGTCG
* * * * * * * * **
32557455 TGAAGTAGATCGAAGAAAGCAAATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTA
1 TGAAATAGATCAAAGATAGCAGATCTTGTCTTCACGTACTGGCGCGAAGTAGACCAAAGATACAA
* * * * * * * *
32557520 GATCTTGTCTTCATATATTGGCA-TGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCCATACTG
66 GATCTTATCTCCCTATACTGGCAGCGAAGTAGATCAAAGAAAGTAGATCTTGTCTT-CCATACTA
* * *
32557584 GTGGCGAAGTAGATCGAAAAAAGTAGATCTTGTCTTCATGTATTGGCG
130 GTGGCGAAGTAGATCGAAAAAAGCAGATCTTGTCTTCATGTATCGGCA
* * * * * **
32557632 TGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTA
1 TGAAATAGATCAAAGATAGCAGATCTTGTCTTCACGTACTGGCGCGAAGTAGACCAAAGATACAA
* ** * * *
32557697 GATCTTGTCTTTCTATACTGGCGGCGAAGTAGATCAAAGAAAGTAGATCTTGTCTT-CAT-GTAT
66 GATCTTATCTCCCTATACTGGCAGCGAAGTAGATCAAAGAAAGTAGATCTTGTCTTCCATACTAG
*
32557760 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATCGGCA
131 TGGCGAAGTAGATCGAAAAAAGCAGATCTTGTCTTCATGTATCGGCA
* * *
32557807 TGAAATAGATCAAAGGTAGCAGATCTTGTCTTCCCGTACTGGTGGCGAAGTAGACCAAAGATACA
1 TGAAATAGATCAAAGATAGCAGATCTTGTCTTCACGTACTGG-CGCGAAGTAGACCAAAGATACA
32557872 AG-TCTTATCTCCCT
65 AGATCTTATCTCCCT
32557886 TAAGTTGCAG
Statistics
Matches: 222, Mismatches: 30, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
175 90 0.41
176 22 0.10
177 81 0.36
178 29 0.13
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (177 bp):
TGAAATAGATCAAAGATAGCAGATCTTGTCTTCACGTACTGGCGCGAAGTAGACCAAAGATACAA
GATCTTATCTCCCTATACTGGCAGCGAAGTAGATCAAAGAAAGTAGATCTTGTCTTCCATACTAG
TGGCGAAGTAGATCGAAAAAAGCAGATCTTGTCTTCATGTATCGGCA
Found at i:32563399 original size:14 final size:14
Alignment explanation
Indices: 32563380--32563407 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32563370 TGGGAGATCA
32563380 GGTTTTCCTTAAGG
1 GGTTTTCCTTAAGG
32563394 GGTTTTCCTTAAGG
1 GGTTTTCCTTAAGG
32563408 TATCACCGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.29, T:0.43
Consensus pattern (14 bp):
GGTTTTCCTTAAGG
Found at i:32567134 original size:31 final size:29
Alignment explanation
Indices: 32567083--32567141 Score: 73
Period size: 31 Copynumber: 2.0 Consensus size: 29
32567073 TACCACTCTA
32567083 TGTCATTTTAAATTTATATTATTATTTTAGG
1 TGTCATTTTAAATTTATATTA--ATTTTAGG
* * *
32567114 TGTCGTTTTAAGTTTTTATTAATTTTAG
1 TGTCATTTTAAATTTATATTAATTTTAG
32567142 ATATTTTCCC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 7 0.28
31 18 0.72
ACGTcount: A:0.25, C:0.03, G:0.12, T:0.59
Consensus pattern (29 bp):
TGTCATTTTAAATTTATATTAATTTTAGG
Found at i:32570378 original size:24 final size:24
Alignment explanation
Indices: 32570350--32570406 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
32570340 TTCAACAGCT
32570350 TTGTAATAGCACAAGTTCATAGTC
1 TTGTAATAGCACAAGTTCATAGTC
* *
32570374 TTGTAACAACACAAGTTCATAGTC
1 TTGTAATAGCACAAGTTCATAGTC
*
32570398 ATGTAATAG
1 TTGTAATAG
32570407 TTTTGTAACA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.32
Consensus pattern (24 bp):
TTGTAATAGCACAAGTTCATAGTC
Found at i:32573068 original size:43 final size:45
Alignment explanation
Indices: 32572949--32573098 Score: 187
Period size: 45 Copynumber: 3.4 Consensus size: 45
32572939 AGGAGGAAGA
* * * *
32572949 ATTGGTGGCTTCTTCCACAACCTACATGACAACTTGTCTGCAAAT
1 ATTGGTGGCTTCATCCACAACCTACATGGCAGCTTGTCTGCGAAT
* * **
32572994 ATTGGTGGCTTCGTCCACAACCTACAAGGCAGCTTGTCTATGAAT
1 ATTGGTGGCTTCATCCACAACCTACATGGCAGCTTGTCTGCGAAT
* *
32573039 -TTGGTGG-TTTATCCACAACCTACATGGCAGTTTGTCTGCGAAT
1 ATTGGTGGCTTCATCCACAACCTACATGGCAGCTTGTCTGCGAAT
*
32573082 ATTGGTGGCTCCATCCA
1 ATTGGTGGCTTCATCCA
32573099 TATATATTAG
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
43 30 0.34
44 14 0.16
45 44 0.50
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (45 bp):
ATTGGTGGCTTCATCCACAACCTACATGGCAGCTTGTCTGCGAAT
Found at i:32575584 original size:4 final size:4
Alignment explanation
Indices: 32575575--32575608 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
32575565 AAGTTTTATT
32575575 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
32575609 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:32575616 original size:22 final size:22
Alignment explanation
Indices: 32575558--32575617 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
32575548 AAGTGGCCCA
*
32575558 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
32575582 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
32575603 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
32575618 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:32577983 original size:18 final size:18
Alignment explanation
Indices: 32577962--32578000 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
32577952 GATTGAGAGT
* *
32577962 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
*
32577980 GAAAAGAAATTTGAAAAA
1 GAAAAGAAATGTGAAAAA
32577998 GAA
1 GAA
32578001 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.23, T:0.13
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:32579403 original size:4 final size:4
Alignment explanation
Indices: 32579394--32579427 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
32579384 AAGTTTTATT
32579394 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
32579428 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:32579435 original size:22 final size:22
Alignment explanation
Indices: 32579377--32579436 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
32579367 AAGTGGCCCA
*
32579377 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
32579401 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
32579422 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
32579437 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:32581448 original size:20 final size:22
Alignment explanation
Indices: 32581423--32581463 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
32581413 ATAATAATAA
32581423 TAATAAT-AAT-AATAAATTTT
1 TAATAATCAATCAATAAATTTT
32581443 TAATAATCAATGCAATAAATT
1 TAATAATCAAT-CAATAAATT
32581464 ACAAAGTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 3 0.17
23 8 0.44
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (22 bp):
TAATAATCAATCAATAAATTTT
Found at i:32581449 original size:3 final size:3
Alignment explanation
Indices: 32581412--32581437 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
32581402 AACATTTTAA
32581412 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
32581438 ATTTTTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:32582224 original size:31 final size:31
Alignment explanation
Indices: 32582179--32582246 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
32582169 TTACAAAATG
* *
32582179 GTCACTGAATTATTCAGAAGTTTTTAT-TCAA
1 GTCACTGAACTATTCAAAAGTTTTTATGT-AA
*
32582210 GTCATTGAACTATTCAAAAGTTTTTATGTAA
1 GTCACTGAACTATTCAAAAGTTTTTATGTAA
32582241 GTCACT
1 GTCACT
32582247 AGGCAATTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 31 0.97
32 1 0.03
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.41
Consensus pattern (31 bp):
GTCACTGAACTATTCAAAAGTTTTTATGTAA
Found at i:32592496 original size:57 final size:57
Alignment explanation
Indices: 32592429--32592712 Score: 402
Period size: 57 Copynumber: 5.1 Consensus size: 57
32592419 ATTTTTTAGG
* * * *
32592429 TCATTTTCATTTTA-GAGAAAACCACATTCATTTTCAAATGATTACATTTCTCCATTT
1 TCATTTTCA-TTTAGGAGAAAACCATATTAATTTCCAAATGATTCCATTTCTCCATTT
* *
32592486 TCATTTTCATTTAGGAGAAAACCTTATTTATTTCCAAATGATTCCATTTCTCCATTT
1 TCATTTTCATTTAGGAGAAAACCATATTAATTTCCAAATGATTCCATTTCTCCATTT
*
32592543 TCATTTTCATTTAGGAGAAAACCATATTAATTTCCAAATGATTTCATTTCTCCATTT
1 TCATTTTCATTTAGGAGAAAACCATATTAATTTCCAAATGATTCCATTTCTCCATTT
*
32592600 TCATTTTCATTTTGGAGAAAACCATATTAATTTCCAAATGATTCCATTTCTCCATTT
1 TCATTTTCATTTAGGAGAAAACCATATTAATTTCCAAATGATTCCATTTCTCCATTT
* *
32592657 TCA---T--TTT-GGAGAAAAGCATAATAATTTCCAAATGATTTCTCATTTCTCCATTT
1 TCATTTTCATTTAGGAGAAAACCATATTAATTTCCAAATGA-TTC-CATTTCTCCATTT
32592710 TCA
1 TCA
32592713 CCCGTTCTAT
Statistics
Matches: 212, Mismatches: 12, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
51 26 0.12
52 6 0.03
53 16 0.08
54 1 0.00
56 4 0.02
57 159 0.75
ACGTcount: A:0.31, C:0.19, G:0.07, T:0.44
Consensus pattern (57 bp):
TCATTTTCATTTAGGAGAAAACCATATTAATTTCCAAATGATTCCATTTCTCCATTT
Found at i:32596479 original size:19 final size:21
Alignment explanation
Indices: 32596455--32596493 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
32596445 ATTCAAACCC
32596455 CAAGATTAAA-AA-ATAAAAG
1 CAAGATTAAATAAGATAAAAG
32596474 CAAGATTAAATAAGATAAAA
1 CAAGATTAAATAAGATAAAA
32596494 TTTAACCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.56
20 2 0.11
21 6 0.33
ACGTcount: A:0.67, C:0.05, G:0.10, T:0.18
Consensus pattern (21 bp):
CAAGATTAAATAAGATAAAAG
Found at i:32598063 original size:24 final size:24
Alignment explanation
Indices: 32598026--32598074 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
32598016 TCACAACAGA
* * * *
32598026 ATCTTCCTTTACTTTTTCTTTTTC
1 ATCTTCATTAACTTCTTCTTCTTC
32598050 ATCTTCATTAACTTCTTCTTCTTC
1 ATCTTCATTAACTTCTTCTTCTTC
32598074 A
1 A
32598075 GTAACAACTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.14, C:0.27, G:0.00, T:0.59
Consensus pattern (24 bp):
ATCTTCATTAACTTCTTCTTCTTC
Found at i:32599718 original size:26 final size:26
Alignment explanation
Indices: 32599695--32599769 Score: 87
Period size: 26 Copynumber: 2.9 Consensus size: 26
32599685 ATATTATCGT
*
32599695 AACAAAGCTACTAGTAACAGTATCAC
1 AACAAAGCTACTAGTAACAATATCAC
* *
32599721 AGCAAAGCTGCTAGTAACAATATCAC
1 AACAAAGCTACTAGTAACAATATCAC
** **
32599747 AGTAAAGCTGGTAGTAACAATAT
1 AACAAAGCTACTAGTAACAATAT
32599770 AGTTCCTCCA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.21
Consensus pattern (26 bp):
AACAAAGCTACTAGTAACAATATCAC
Found at i:32599983 original size:26 final size:27
Alignment explanation
Indices: 32599914--32600013 Score: 123
Period size: 27 Copynumber: 3.7 Consensus size: 27
32599904 TTTCATCTCT
**
32599914 TAGGGGTATAATAGTCATTTTACCCTA
1 TAGGGGTATTTTAGTCATTTTACCCTA
** *
32599941 T-GAGGGTATTTCGGTCATTTTATCCTA
1 TAG-GGGTATTTTAGTCATTTTACCCTA
32599968 TA-GGGTATTTTAGTCATTTTACCCTA
1 TAGGGGTATTTTAGTCATTTTACCCTA
*
32599994 TAGGGGTATTTTGGTCATTT
1 TAGGGGTATTTTAGTCATTT
32600014 ATTAACCTCT
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
26 24 0.39
27 37 0.61
ACGTcount: A:0.22, C:0.13, G:0.21, T:0.44
Consensus pattern (27 bp):
TAGGGGTATTTTAGTCATTTTACCCTA
Found at i:32600014 original size:26 final size:27
Alignment explanation
Indices: 32599927--32600013 Score: 124
Period size: 27 Copynumber: 3.3 Consensus size: 27
32599917 GGGTATAATA
*
32599927 GTCATTTTACCCTAT-GAGGGTATTTCG
1 GTCATTTTACCCTATAG-GGGTATTTTG
* *
32599954 GTCATTTTATCCTATA-GGGTATTTTA
1 GTCATTTTACCCTATAGGGGTATTTTG
32599980 GTCATTTTACCCTATAGGGGTATTTTG
1 GTCATTTTACCCTATAGGGGTATTTTG
32600007 GTCATTT
1 GTCATTT
32600014 ATTAACCTCT
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
26 23 0.43
27 30 0.57
ACGTcount: A:0.20, C:0.15, G:0.20, T:0.46
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTTTG
Found at i:32612866 original size:18 final size:18
Alignment explanation
Indices: 32612830--32612874 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
32612820 TTACATATGC
*
32612830 ATAAAGGTTCCCATACAT
1 ATAAAGGTTACCATACAT
* *
32612848 ATAAAGGTTAGCATGCAT
1 ATAAAGGTTACCATACAT
*
32612866 ATAAGGGTT
1 ATAAAGGTT
32612875 TGTCAATTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29
Consensus pattern (18 bp):
ATAAAGGTTACCATACAT
Found at i:32627953 original size:27 final size:27
Alignment explanation
Indices: 32627902--32627997 Score: 104
Period size: 27 Copynumber: 3.6 Consensus size: 27
32627892 CCAGACTTTT
* *
32627902 CCGTGTTTAATGTCCTGTCGGACTATC
1 CCGTGTTTAATGTCCTATCGAACTATC
**
32627929 TTGTGTTTAATGT-CTCATCGAACTATC
1 CCGTGTTTAATGTCCT-ATCGAACTATC
* *
32627956 CCATGTTTAACGTCCTATCGAACTATC
1 CCGTGTTTAATGTCCTATCGAACTATC
* *
32627983 CCGTGCTTATTGTCC
1 CCGTGTTTAATGTCC
32627998 CGTCAAACCT
Statistics
Matches: 55, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
26 2 0.04
27 51 0.93
28 2 0.04
ACGTcount: A:0.19, C:0.26, G:0.17, T:0.39
Consensus pattern (27 bp):
CCGTGTTTAATGTCCTATCGAACTATC
Found at i:32628075 original size:45 final size:45
Alignment explanation
Indices: 32628011--32628184 Score: 215
Period size: 45 Copynumber: 3.9 Consensus size: 45
32628001 CAAACCTTCA
* * * *
32628011 CATGATGTCATAGCGTCTTTTAGCTATAGTCTTACTCATTATTAC
1 CATGATGTCATAGCATCTTTCAGCTATGGTCTTACTCATTATTAT
* *
32628056 CATGATGTCATAGCATCTTTCAGCCATGGTCTTACTCATTTTTAT
1 CATGATGTCATAGCATCTTTCAGCTATGGTCTTACTCATTATTAT
* * *
32628101 CATGATGTCATAACATCTTTCAGCTATGGTCTTACACATCAATT-T
1 CATGATGTCATAGCATCTTTCAGCTATGGTCTTACTCAT-TATTAT
** * *
32628146 GGTGATGTCATAGCATCTTTTAACTATGGTCTTACTCAT
1 CATGATGTCATAGCATCTTTCAGCTATGGTCTTACTCAT
32628185 CTTTAGGTGT
Statistics
Matches: 111, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
45 109 0.98
46 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.41
Consensus pattern (45 bp):
CATGATGTCATAGCATCTTTCAGCTATGGTCTTACTCATTATTAT
Found at i:32631536 original size:15 final size:15
Alignment explanation
Indices: 32631518--32631548 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
32631508 TTAAAGCTTC
32631518 TATTTTAAACTGATG
1 TATTTTAAACTGATG
32631533 TATTTTAAACTGATG
1 TATTTTAAACTGATG
32631548 T
1 T
32631549 CAACACATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.13, T:0.48
Consensus pattern (15 bp):
TATTTTAAACTGATG
Found at i:32635645 original size:22 final size:21
Alignment explanation
Indices: 32635604--32635653 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
32635594 AATTAATGTC
32635604 ATATATATATTTAAAAATATAG
1 ATAT-TATATTTAAAAATATAG
*
32635626 ATATTATCTTTAAAAGATATAG
1 ATATTATATTTAAAA-ATATAG
*
32635648 AAATTA
1 ATATTA
32635654 AATAAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 10 0.40
22 15 0.60
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.40
Consensus pattern (21 bp):
ATATTATATTTAAAAATATAG
Found at i:32635758 original size:21 final size:21
Alignment explanation
Indices: 32635734--32635773 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
32635724 CATTTTTATT
*
32635734 TAATTTCTATATCTTTAAAGA
1 TAATATCTATATCTTTAAAGA
* *
32635755 TAATATCTATGTTTTTAAA
1 TAATATCTATATCTTTAAA
32635774 TTTCAATTAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.07, G:0.05, T:0.50
Consensus pattern (21 bp):
TAATATCTATATCTTTAAAGA
Found at i:32639023 original size:50 final size:49
Alignment explanation
Indices: 32638918--32639159 Score: 277
Period size: 50 Copynumber: 4.7 Consensus size: 49
32638908 TAAAGAGATC
* *
32638918 CCATGTAATACCATGTCTGGGACATGGAATTGGCATCCTTGAGATCATGAGAGGT
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAG---ATGAGAGGT
* * *
32638973 CTCATGTAAGACTATGTCTGGGACATGGCGTTGGCACCTAGATGAGAGGT
1 C-CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGT
*
32639023 CTCATGAAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGT
1 C-CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGT
* * * **
32639073 CCCTCGTAAGACCATGTCTGGGACATGGCATGGGCACCGACATGAGTACAT
1 CCAT-GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAG-AGGT
*
32639124 ACCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 -CCATGTAAGACCATGTCTGGGACATGGCATTGGCA
32639160 TGTTATTATC
Statistics
Matches: 165, Mismatches: 18, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
49 2 0.01
50 94 0.57
51 31 0.19
52 3 0.02
53 2 0.01
55 3 0.02
56 30 0.18
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (49 bp):
CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGT
Found at i:32642084 original size:32 final size:33
Alignment explanation
Indices: 32642038--32642100 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
32642028 GTGATTTTTC
*
32642038 TAATTAAATTTTTTTA-TTTTAAATTTTTTAGT
1 TAATTAAATATTTTTAGTTTTAAATTTTTTAGT
**
32642070 TAATTAAATATTTTTAGTTTTATTTTTTTTA
1 TAATTAAATATTTTTAGTTTTAAATTTTTTA
32642101 CTTACCTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 15 0.56
33 12 0.44
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (33 bp):
TAATTAAATATTTTTAGTTTTAAATTTTTTAGT
Found at i:32642085 original size:18 final size:17
Alignment explanation
Indices: 32642038--32642088 Score: 63
Period size: 18 Copynumber: 3.1 Consensus size: 17
32642028 GTGATTTTTC
32642038 TAATTAAATTTTTTTA-T
1 TAATTAAA-TTTTTTAGT
32642055 T--TTAAATTTTTTAGT
1 TAATTAAATTTTTTAGT
32642070 TAATTAAATATTTTTAGT
1 TAATTAAAT-TTTTTAGT
32642088 T
1 T
32642089 TTATTTTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
14 7 0.23
15 7 0.23
17 7 0.23
18 9 0.30
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (17 bp):
TAATTAAATTTTTTAGT
Found at i:32660592 original size:41 final size:41
Alignment explanation
Indices: 32660535--32660617 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
32660525 ATCAGGCAAC
32660535 AGAGAATGATAAGAGGACATTGAGGAGACTAGCTATTGACT
1 AGAGAATGATAAGAGGACATTGAGGAGACTAGCTATTGACT
32660576 AGAGAATGATAAGAGGACATTGAGGAGACTAGCTATTGACT
1 AGAGAATGATAAGAGGACATTGAGGAGACTAGCTATTGACT
32660617 A
1 A
32660618 TGTCTTAGAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.40, C:0.10, G:0.29, T:0.22
Consensus pattern (41 bp):
AGAGAATGATAAGAGGACATTGAGGAGACTAGCTATTGACT
Found at i:32663103 original size:132 final size:132
Alignment explanation
Indices: 32662866--32663937 Score: 1649
Period size: 132 Copynumber: 8.1 Consensus size: 132
32662856 CAGATCGGTA
* * *
32662866 ACCAAGTCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCTTAAG
1 ACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
*
32662931 CAGTAGTGGAGCAGATCGAAGGCGACGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
66 CAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
32662996 CC
131 CC
32662998 ACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
1 ACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
*
32663063 CAGTAGTGGAGCAGATCGAAGACTACGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
66 CAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
32663128 CC
131 CC
* *
32663130 ACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGTAGATCTTATCTCCCTAAG
1 ACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
*
32663195 CAGTAGTGGAGCAGATTGAAGACGACGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
66 CAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
32663260 CC
131 CC
32663262 ACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
1 ACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
* *
32663327 CCGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
66 CAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
32663392 CC
131 CC
* *
32663394 ACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGTAGATCTTATCTCCCTAAG
1 ACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
*
32663459 CAGTAGTGGAGCAGATCG-A-A-GAC---TC---GCTTTCCAAGATAGTGGGAAGCAGATTTAAG
66 CAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
32663515 CC
131 CC
* ** *
32663517 ACCAAGCCTTGTCTCTCTGAGCAGCAGTAGAGAAGGTTGAAGAGTGTAGATCTTATCTCCCTAAG
1 ACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
32663582 CAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGGAAGCATATTTAAG
66 CAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGT-GG--G-------AAG
32663647 CAGATTTAAGCC
121 CAGATTTAAGCC
* * * *
32663659 ACCAAGCCTTGTCTCCCTGAGCAGCAGCAGAGAAGGTTAAAGATTATTGATCTTATCTCCCTAAG
1 ACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
* * ** * *
32663724 CAGTAGTGGAGCAAATCGAAGATGGTGAATCTTATCTTTCTAAGATAGTAGGAAGCAGATTTAAG
66 CAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
32663789 CC
131 CC
* * ** *
32663791 ACCAAACCTTGTCTCCCTAAGCAATAGCGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAG
1 ACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
* * * * *
32663856 CAGTAGCGGAGCAGATCGAGGTCGACGAGTCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAAG
66 CAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
32663921 CC
131 CC
*
32663923 ACCAAGCCTTATCTC
1 ACCAAGCCTTGTCTC
32663938 TCTAAAGTTG
Statistics
Matches: 867, Mismatches: 54, Indels: 38
0.90 0.06 0.04
Matches are distributed among these distances:
123 113 0.13
124 1 0.00
125 1 0.00
126 5 0.01
129 4 0.00
130 1 0.00
131 1 0.00
132 618 0.71
133 2 0.00
135 1 0.00
139 1 0.00
141 1 0.00
142 118 0.14
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (132 bp):
ACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
CAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
CC
Found at i:32663208 original size:88 final size:88
Alignment explanation
Indices: 32663049--32663479 Score: 198
Period size: 88 Copynumber: 4.9 Consensus size: 88
32663039 GATTGTAGAT
* * * * * *
32663049 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA--CTACGAATCTTATCTTTCC-AAG-A-T
1 CTTATCTCCCTAAGCAGCAGTGGAGAAGGTTGAAGAGTGTA-G-ATCTTATC-TCCCTAAGCAGT
*
32663109 AGTGGGAAGCAGATTTAAGCCACCAAGC
63 AGT-GG-AGCAGATTGAAGCCACCAAGC
* *
32663137 CTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGTAGATCTTATCTCCCTAAGCAGTAGT
1 CTTATCTCCCTAAGCAGCAGTGGAGAAGGTTGAAGAGTGTAGATCTTATCTCCCTAAGCAGTAGT
* * *
32663202 GGAGCAGATTGAAGACGACGAA-T
66 GGAGCAGATTGAAG-CCACCAAGC
* * * *** * * *
32663225 CTTATCTTTCC-AAG-A-TAGTGG-GAAGCAGATTTAAGCCA-CCAAG-CCTTGTCTCCCTGAGC
1 CTTATC-TCCCTAAGCAGCAGTGGAGAAG--G-TTGAAG--AGTGTAGATCTTATCTCCCTAAGC
* * * * *** *
32663284 AGCAGCGGAGAAGGTTGAAG--ATTGTAGAT
60 AGTAGTGGAGCAGATTGAAGCCA-CCAAG-C
* * * * * * *
32663313 CTTATCTCCCTAAGCCGTAGTGGAGCAGATCGAAGACG-G-CGAATCTTATCTTTCC-AAG-A-T
1 CTTATCTCCCTAAGCAGCAGTGGAGAAGGTTGAAGA-GTGTAG-ATCTTATC-TCCCTAAGCAGT
*
32663373 AGTGGGAAGCAGATTTAAGCCACCAAGC
63 AGT-GG-AGCAGATTGAAGCCACCAAGC
* *
32663401 CTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGTAGATCTTATCTCCCTAAGCAGTAGT
1 CTTATCTCCCTAAGCAGCAGTGGAGAAGGTTGAAGAGTGTAGATCTTATCTCCCTAAGCAGTAGT
*
32663466 GGAGCAGATCGAAG
66 GGAGCAGATTGAAG
32663480 ACTCGCTTTC
Statistics
Matches: 249, Mismatches: 61, Indels: 66
0.66 0.16 0.18
Matches are distributed among these distances:
85 5 0.02
86 11 0.04
87 15 0.06
88 174 0.70
89 23 0.09
90 18 0.07
91 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (88 bp):
CTTATCTCCCTAAGCAGCAGTGGAGAAGGTTGAAGAGTGTAGATCTTATCTCCCTAAGCAGTAGT
GGAGCAGATTGAAGCCACCAAGC
Found at i:32668378 original size:14 final size:14
Alignment explanation
Indices: 32668359--32668385 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32668349 AAGGATTATT
32668359 TCATAAAAGGTTAA
1 TCATAAAAGGTTAA
32668373 TCATAAAAGGTTA
1 TCATAAAAGGTTA
32668386 TATCGAATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.07, G:0.15, T:0.30
Consensus pattern (14 bp):
TCATAAAAGGTTAA
Found at i:32681821 original size:37 final size:37
Alignment explanation
Indices: 32681771--32681849 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
32681761 TTATTACAAA
* * *
32681771 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
32681808 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
32681845 GTCTT
1 GTCTT
32681850 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:32682145 original size:49 final size:49
Alignment explanation
Indices: 32681968--32682381 Score: 660
Period size: 49 Copynumber: 8.6 Consensus size: 49
32681958 CCCTTCGGGA
* * * * *
32681968 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32682015 CCTGTCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32682062 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32682109 CTTATCACGTATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32682158 CTTATCACGTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32682207 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
32682256 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
32682305 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
32682354 CTTATCACATGTATATACACTTTCACAT
1 CTTATCACATGTATATACACTTTCACAT
32682382 ATGGGTTTAA
Statistics
Matches: 346, Mismatches: 18, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 90 0.26
49 255 0.74
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (49 bp):
CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32685398 original size:58 final size:58
Alignment explanation
Indices: 32685308--32685431 Score: 203
Period size: 58 Copynumber: 2.1 Consensus size: 58
32685298 GAGAATCGTT
* *
32685308 CTTGTTTGCGATGATTGCAAGAAAAGGCATTTTGGTGAATGTTGATCAAAGTAGGGAG
1 CTTGTTTTCGATGATTGCAACAAAAGGCATTTTGGTGAATGTTGATCAAAGTAGGGAG
* *
32685366 CTTGTTTTCGTTGATTGCAACAAAAGGCATTTTGGTGAATGTTGATCAAAGTCGGGAG
1 CTTGTTTTCGATGATTGCAACAAAAGGCATTTTGGTGAATGTTGATCAAAGTAGGGAG
*
32685424 CATGTTTT
1 CTTGTTTT
32685432 TGTTATGGAT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
58 61 1.00
ACGTcount: A:0.27, C:0.10, G:0.28, T:0.35
Consensus pattern (58 bp):
CTTGTTTTCGATGATTGCAACAAAAGGCATTTTGGTGAATGTTGATCAAAGTAGGGAG
Found at i:32697409 original size:16 final size:18
Alignment explanation
Indices: 32697374--32697415 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
32697364 GAAATAATTA
32697374 AAATTTTTCTCCTGCATTT
1 AAATTTTTCT-CTGCATTT
32697393 AAATTTTTCT-T-CATTT
1 AAATTTTTCTCTGCATTT
32697409 -AATTTTT
1 AAATTTTT
32697416 TTATATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 7 0.30
16 5 0.22
17 1 0.04
19 10 0.43
ACGTcount: A:0.24, C:0.14, G:0.02, T:0.60
Consensus pattern (18 bp):
AAATTTTTCTCTGCATTT
Found at i:32697443 original size:25 final size:24
Alignment explanation
Indices: 32697388--32697449 Score: 61
Period size: 25 Copynumber: 2.5 Consensus size: 24
32697378 TTTTCTCCTG
* * *
32697388 CATTTAAATTTTTCTTCATTTAATT
1 CATTT-AATTTTTATTCACTAAATT
**
32697413 TTTTTATATTTTTATTCACTAAATT
1 CATTTA-ATTTTTATTCACTAAATT
32697438 CATTTAATTTTT
1 CATTTAATTTTT
32697450 CCTTCTTGTT
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
24 7 0.24
25 22 0.76
ACGTcount: A:0.27, C:0.10, G:0.00, T:0.63
Consensus pattern (24 bp):
CATTTAATTTTTATTCACTAAATT
Found at i:32700594 original size:12 final size:12
Alignment explanation
Indices: 32700579--32700609 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
32700569 TGTGACATTG
*
32700579 ATTGCCAATAGT
1 ATTGCCAATAGA
32700591 ATTGCCAATAGA
1 ATTGCCAATAGA
32700603 ATTGCCA
1 ATTGCCA
32700610 TGGAAATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.29
Consensus pattern (12 bp):
ATTGCCAATAGA
Found at i:32701054 original size:29 final size:29
Alignment explanation
Indices: 32701022--32701079 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
32701012 ACTTCTTTAA
*
32701022 ATGTTGATGAATGATTTAAATTTGGTGTT
1 ATGTTGATGAATGATTCAAATTTGGTGTT
*
32701051 ATGTTGATGAATGGTTCAAATTTGGTGTT
1 ATGTTGATGAATGATTCAAATTTGGTGTT
32701080 TACTTTTCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.26, C:0.02, G:0.26, T:0.47
Consensus pattern (29 bp):
ATGTTGATGAATGATTCAAATTTGGTGTT
Found at i:32701463 original size:76 final size:76
Alignment explanation
Indices: 32701337--32701481 Score: 254
Period size: 76 Copynumber: 1.9 Consensus size: 76
32701327 AGAATATTTG
* * *
32701337 TAGCACTCTAGACATAGATGTTTCAAGTTGTGCAGAGAAGAACATTCATTGCAGTTATTAATCCA
1 TAGCACTCTAGACATAGATGTTGCAAGTTGTGCAGAGAAGAAAATTCATTGCAGTTATTAATCAA
32701402 GAGTATTTTCC
66 GAGTATTTTCC
*
32701413 TAGCACTCTAGACATAGATGTTGCGAGTTGTGCAGAGAAGAAAATTCATTGCAGTTATTAATCAA
1 TAGCACTCTAGACATAGATGTTGCAAGTTGTGCAGAGAAGAAAATTCATTGCAGTTATTAATCAA
32701478 GAGT
66 GAGT
32701482 TCTATAAACA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
76 65 1.00
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (76 bp):
TAGCACTCTAGACATAGATGTTGCAAGTTGTGCAGAGAAGAAAATTCATTGCAGTTATTAATCAA
GAGTATTTTCC
Found at i:32703161 original size:21 final size:21
Alignment explanation
Indices: 32703135--32703186 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
32703125 GGAGACTGTC
32703135 AGTGATGTCGCGTCATAAGAT
1 AGTGATGTCGCGTCATAAGAT
**
32703156 AGTGATGTCATGTCATAAGAT
1 AGTGATGTCGCGTCATAAGAT
*
32703177 AGTGGTGTCG
1 AGTGATGTCG
32703187 AGACATCAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.27, C:0.12, G:0.31, T:0.31
Consensus pattern (21 bp):
AGTGATGTCGCGTCATAAGAT
Found at i:32705220 original size:39 final size:42
Alignment explanation
Indices: 32705177--32705257 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
32705167 TTATCCTAGA
* *
32705177 AAAAAAGAATTT-TAAAA-AA-AAGATAATCTTGGGTTGTTG
1 AAAAAAGAATTTAGAAAAGAAGAAGATAAACTTGGGTTGTTG
32705216 AAAAAAGAATTTAGAAAAGAAGAAGATAAACTTGGGTTGTTG
1 AAAAAAGAATTTAGAAAAGAAGAAGATAAACTTGGGTTGTTG
32705258 GATTTACCCT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
39 12 0.32
40 4 0.11
41 2 0.05
42 19 0.51
ACGTcount: A:0.49, C:0.02, G:0.21, T:0.27
Consensus pattern (42 bp):
AAAAAAGAATTTAGAAAAGAAGAAGATAAACTTGGGTTGTTG
Found at i:32716681 original size:20 final size:18
Alignment explanation
Indices: 32716650--32716698 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
32716640 AATAAAAAAT
32716650 AAAAAATTAAAAGATTT-A
1 AAAAAATTAAAAG-TTTCA
32716668 AATAAAATTCAAAAGTTTCA
1 AA-AAAATT-AAAAGTTTCA
32716688 AAAAAA-TAAAA
1 AAAAAATTAAAA
32716699 ATATAAGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
17 4 0.14
18 3 0.11
19 13 0.46
20 8 0.29
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.24
Consensus pattern (18 bp):
AAAAAATTAAAAGTTTCA
Found at i:32716744 original size:19 final size:19
Alignment explanation
Indices: 32716722--32716766 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
32716712 TAAAATTATA
32716722 AAAAAAATGAAAAAAATAG
1 AAAAAAATGAAAAAAATAG
* * *
32716741 AAAAACATTAAAAATATAG
1 AAAAAAATGAAAAAAATAG
32716760 AAAAAAA
1 AAAAAAA
32716767 ATTAAATATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (19 bp):
AAAAAAATGAAAAAAATAG
Found at i:32720738 original size:17 final size:17
Alignment explanation
Indices: 32720716--32720762 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
32720706 CTCTATCTAA
32720716 TAATATAATAAATTATT
1 TAATATAATAAATTATT
** *
32720733 TAATATTTTAATTTATT
1 TAATATAATAAATTATT
*
32720750 TTA-ATAATAAATT
1 TAATATAATAAATT
32720763 TTAAAATTAA
Statistics
Matches: 23, Mismatches: 7, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
16 7 0.30
17 16 0.70
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TAATATAATAAATTATT
Found at i:32720833 original size:15 final size:15
Alignment explanation
Indices: 32720746--32720863 Score: 56
Period size: 15 Copynumber: 8.0 Consensus size: 15
32720736 TATTTTAATT
32720746 TATTTTAATAAT-AA
1 TATTTTAATAATAAA
*
32720760 -ATTTTAA-AATTAA
1 TATTTTAATAATAAA
32720773 TAATTTT-A-AAT-AA
1 T-ATTTTAATAATAAA
*
32720786 TATTCTTCATGAA-AAA
1 TATT-TTAAT-AATAAA
* *
32720802 TA-TTCAAT-ATTAA
1 TATTTTAATAATAAA
32720815 TATTTTAATAATAAA
1 TATTTTAATAATAAA
*
32720830 TATTTATTACAATTATAAA
1 TA-TT-TT--AATAATAAA
*
32720849 TATATTAATAATAAA
1 TATTTTAATAATAAA
32720864 CGTTTTGTAG
Statistics
Matches: 81, Mismatches: 8, Indels: 29
0.69 0.07 0.25
Matches are distributed among these distances:
12 7 0.09
13 18 0.22
14 13 0.16
15 20 0.25
16 8 0.10
17 4 0.05
18 1 0.01
19 10 0.12
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (15 bp):
TATTTTAATAATAAA
Found at i:32729325 original size:10 final size:11
Alignment explanation
Indices: 32729306--32729364 Score: 50
Period size: 10 Copynumber: 5.2 Consensus size: 11
32729296 CCTAAGTATT
32729306 ATCACTAAATA
1 ATCACTAAATA
32729317 ATC-CTAAATA
1 ATCACTAAATA
32729327 TTATCACTAAATA
1 --ATCACTAAATA
**
32729340 AT-TTTAAATA
1 ATCACTAAATA
32729350 TTATCACTAAATA
1 --ATCACTAAATA
32729363 AT
1 AT
32729365 TCAAAATTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
10 13 0.34
11 7 0.18
12 5 0.13
13 13 0.34
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (11 bp):
ATCACTAAATA
Found at i:32729338 original size:13 final size:13
Alignment explanation
Indices: 32729297--32729362 Score: 65
Period size: 13 Copynumber: 5.5 Consensus size: 13
32729287 TAGATTTTTC
*
32729297 CTAAGTATTATCA
1 CTAAATATTATCA
32729310 CTAAATA--ATC-
1 CTAAATATTATCA
32729320 CTAAATATTATCA
1 CTAAATATTATCA
32729333 CTAAATAATT-T--
1 CTAAAT-ATTATCA
32729344 -TAAATATTATCA
1 CTAAATATTATCA
32729356 CTAAATA
1 CTAAATA
32729363 ATTCAAAATT
Statistics
Matches: 44, Mismatches: 1, Indels: 16
0.72 0.02 0.26
Matches are distributed among these distances:
9 3 0.07
10 13 0.30
11 3 0.07
12 3 0.07
13 19 0.43
14 3 0.07
ACGTcount: A:0.47, C:0.14, G:0.02, T:0.38
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:32729365 original size:23 final size:23
Alignment explanation
Indices: 32729297--32729371 Score: 114
Period size: 23 Copynumber: 3.3 Consensus size: 23
32729287 TAGATTTTTC
* *
32729297 CTAAGTATTATCACTAAATAATC
1 CTAAATATTATCACTAAATAATT
32729320 CTAAATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
*
32729343 TTAAATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
*
32729366 CAAAAT
1 CTAAAT
32729372 TTAAAAATCA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.37
Consensus pattern (23 bp):
CTAAATATTATCACTAAATAATT
Found at i:32735490 original size:12 final size:13
Alignment explanation
Indices: 32735475--32735504 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
32735465 TTACTTACTC
32735475 ACTTACTTG-TTT
1 ACTTACTTGCTTT
32735487 ACTTACTTGCTTT
1 ACTTACTTGCTTT
32735500 ACTTA
1 ACTTA
32735505 AATAACTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.53
13 8 0.47
ACGTcount: A:0.20, C:0.20, G:0.07, T:0.53
Consensus pattern (13 bp):
ACTTACTTGCTTT
Found at i:32735829 original size:50 final size:50
Alignment explanation
Indices: 32735704--32735945 Score: 195
Period size: 50 Copynumber: 4.7 Consensus size: 50
32735694 TGATAATACA
* * * ** *
32735704 TGCCAAAGCTATGTCCCAGACATAGTCTTACATGGGATGTTTTCAGTA-C--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCA-TATCAG
* ** * *
32735753 TGCCAATGCCATATTGCAGATATGGTCTTACATGGGAGCTCTCATATCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAG
* * *
32735803 TGCCCATGCCATGTCCCAGACATGGTCTTAC-TGGGAACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGG-ACCTCTCATATCAG
* * *
32735853 TGCCAACGCCATGTCCAAGACATGGTCTTACATGAGACCTCTCATAATCTCAATG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC-A-G
* * *
32735908 ATGCCAATGCCGTGTCCCATACATGGTCTTTCATGGGA
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
32735946 TCTCATTCCC
Statistics
Matches: 153, Mismatches: 29, Indels: 15
0.78 0.15 0.08
Matches are distributed among these distances:
47 2 0.01
48 6 0.04
49 34 0.22
50 74 0.48
51 3 0.02
53 2 0.01
55 1 0.01
56 31 0.20
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAG
Found at i:32744704 original size:14 final size:13
Alignment explanation
Indices: 32744675--32744717 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
32744665 ATTTGGTCCC
32744675 TTTTTATTTCTTT
1 TTTTTATTTCTTT
*
32744688 TTTTTATTTTTTGT
1 TTTTTATTTCTT-T
*
32744702 TTTTTATTTATTT
1 TTTTTATTTCTTT
32744715 TTT
1 TTT
32744718 AATTAAATGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
13 15 0.56
14 12 0.44
ACGTcount: A:0.09, C:0.02, G:0.02, T:0.86
Consensus pattern (13 bp):
TTTTTATTTCTTT
Found at i:32747164 original size:19 final size:19
Alignment explanation
Indices: 32747121--32747166 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
32747111 AACGTCTCTT
32747121 TATGCATTCATTGCATGCA
1 TATGCATTCATTGCATGCA
*
32747140 TTTGCATCTCA-TGACAT-CA
1 TATGCAT-TCATTG-CATGCA
32747159 TATGCATT
1 TATGCATT
32747167 AAAGTCCACT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
18 1 0.04
19 16 0.70
20 6 0.26
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.39
Consensus pattern (19 bp):
TATGCATTCATTGCATGCA
Found at i:32751055 original size:44 final size:44
Alignment explanation
Indices: 32750917--32751236 Score: 164
Period size: 44 Copynumber: 7.3 Consensus size: 44
32750907 AATAGCAGAT
* * * * *
32750917 CTTGCCTTCCTGCACTGACAACGAAACAGATCAAAGACACCAAC
1 CTTGCCTCCCTGCACTGACAGCGAAGCAGATCAAAAACACCAGC
* ** * * * * * * * *
32750961 CTTACCTCCCTG-GGTTACAGTGGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTCCCTGCACTGACAGCGAAGCAGATCAAAAACACCAG-C
* *
32751005 CTTGCCTTCCTGCACTGACAGCGAAGCAGATCAAAGACACCAGC
1 CTTGCCTCCCTGCACTGACAGCGAAGCAGATCAAAAACACCAGC
* *** * * * * *
32751049 CTTGCCTCCCAGGGTTG-CAGCGAAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTCCCTGCACTGACAGCGAAGCAGATCAAAAACACCAG-C
* * * *
32751093 CTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAATACACCAGC
1 CTTGCCTCCCTGCACTGACAGCGAAGCAGATCAAAAACACCAGC
** * * * * *
32751137 CTTGCCTCCCTTG-GTTG-CAGC-AGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTCCC-TGCACTGACAGCGA-AGCAGATCAAAAACACCAG-C
* * * * *
32751181 CTTGCCTTCCTGCATTGACAACGAAGCAGATCAAAGACACTAGC
1 CTTGCCTCCCTGCACTGACAGCGAAGCAGATCAAAAACACCAGC
*
32751225 ATTGCCTCCCTG
1 CTTGCCTCCCTG
32751237 GGTTGCAGCA
Statistics
Matches: 190, Mismatches: 76, Indels: 20
0.66 0.27 0.07
Matches are distributed among these distances:
42 1 0.01
43 56 0.29
44 75 0.39
45 57 0.30
46 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.20
Consensus pattern (44 bp):
CTTGCCTCCCTGCACTGACAGCGAAGCAGATCAAAAACACCAGC
Found at i:32751274 original size:44 final size:44
Alignment explanation
Indices: 32750965--32751275 Score: 197
Period size: 44 Copynumber: 7.1 Consensus size: 44
32750955 ACCAACCTTA
* * *
32750965 CCTCCCTGGGTTACAGTGGAGCAGGTTAAAAATAGCAGATCTTG
1 CCTCCCTGGGTTGCAGCGAAGCAGGTTAAAAATAGCAGATCTTG
* *** * * * * * *
32751009 CCTTCCTGCACTGACAGCGAAGCAGATCAAAGACACCAG-CCTTG
1 CCTCCCTGGGTTG-CAGCGAAGCAGGTTAAAAATAGCAGATCTTG
*
32751053 CCTCCCAGGGTTGCAGCGAAGCAGGTTAAAAATAGCAGATCTTG
1 CCTCCCTGGGTTGCAGCGAAGCAGGTTAAAAATAGCAGATCTTG
* **** * ** * * * *
32751097 CCTTCCTGCACCGACAGCGAAGCAGATCGAATACACCAG-CCTTG
1 CCTCCCTGGGTTG-CAGCGAAGCAGGTTAAAAATAGCAGATCTTG
*
32751141 CCTCCCTTGGTTGCAGC-AGAGCAGGTTAAAAATAGCAGATCTTG
1 CCTCCCTGGGTTGCAGCGA-AGCAGGTTAAAAATAGCAGATCTTG
* ** * * *
32751185 CCTTCCTGCATTGACAACGAAGCAGATCAAAGACACTAGC--A--TTG
1 CCTCCCTGGGTTG-CAGCGAAGCAGGTTAAA-A-A-TAGCAGATCTTG
32751229 CCTCCCTGGGTTGCAGC-AGAGCAGGTTAAAAATAGCAGATCTTG
1 CCTCCCTGGGTTGCAGCGA-AGCAGGTTAAAAATAGCAGATCTTG
32751273 CCT
1 CCT
32751276 TTCTGCACCG
Statistics
Matches: 189, Mismatches: 63, Indels: 30
0.67 0.22 0.11
Matches are distributed among these distances:
40 4 0.02
41 1 0.01
42 4 0.02
43 49 0.26
44 74 0.39
45 49 0.26
46 3 0.02
47 1 0.01
48 4 0.02
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (44 bp):
CCTCCCTGGGTTGCAGCGAAGCAGGTTAAAAATAGCAGATCTTG
Found at i:32751291 original size:264 final size:264
Alignment explanation
Indices: 32750820--32751299 Score: 773
Period size: 264 Copynumber: 1.8 Consensus size: 264
32750810 ATCAGTGAAG
* *
32750820 ATAGCAGATCTTGCCTTCCTATACCGACAGCGAAGCAGATTGAAGACACCAGCCTTGCCTCCTTG
1 ATAGCAGATCTTGCCTTCCTACACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCTTG
* * *
32750885 GGTTATAGCATAGTAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACTGACAACGAAACAGATCA
66 GGTTACAGCAGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACTGACAACGAAACAGATCA
* **
32750950 AAGACACCAACCTTACCTCCCTGGGTTACAGTGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCC
131 AAGACACCAACATTACCTCCCTGGGTTACAGCAGAGCAGGTTAAAAATAGCAGATCTTGCCTTCC
*
32751015 TGCACTGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCAGGGTTGCAGCGAAGCAGGTT
196 TGCACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCAGGGTTGCAGCGAAGCAGGTT
32751080 AAAA
261 AAAA
* *
32751084 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAATACACCAGCCTTGCCTCCCTT
1 ATAGCAGATCTTGCCTTCCTACACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT-CCTT
* * *
32751149 -GGTTGCAGCAGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCATTGACAACGAAGCAGATC
65 GGGTTACAGCAGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACTGACAACGAAACAGATC
* * * * *
32751213 AAAGACACTAGCATTGCCTCCCTGGGTTGCAGCAGAGCAGGTTAAAAATAGCAGATCTTGCCTTT
130 AAAGACACCAACATTACCTCCCTGGGTTACAGCAGAGCAGGTTAAAAATAGCAGATCTTGCCTTC
32751278 CTGCACCGACAGCGAAGCAGAT
195 CTGCACCGACAGCGAAGCAGAT
32751300 TGATAACCCT
Statistics
Matches: 196, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
264 192 0.98
265 4 0.02
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (264 bp):
ATAGCAGATCTTGCCTTCCTACACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCTTG
GGTTACAGCAGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACTGACAACGAAACAGATCA
AAGACACCAACATTACCTCCCTGGGTTACAGCAGAGCAGGTTAAAAATAGCAGATCTTGCCTTCC
TGCACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCAGGGTTGCAGCGAAGCAGGTT
AAAA
Found at i:32751325 original size:88 final size:88
Alignment explanation
Indices: 32750820--32751299 Score: 692
Period size: 88 Copynumber: 5.5 Consensus size: 88
32750810 ATCAGTGAAG
** ** *
32750820 ATAGCAGATCTTGCCTTCCTATACCGACAGCGAAGCAGATTGAAGACACCAGCCTTGCCTCCTTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTG
** * *
32750885 GGTTATAGCATAGTAGGTTAAAA
66 GGTTGCAGCAGAGCAGGTTAAAA
* * * * *
32750908 ATAGCAGATCTTGCCTTCCTGCACTGACAACGAAACAGATCAAAGACACCAACCTTACCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTG
* **
32750973 GGTTACAGTGGAGCAGGTTAAAA
66 GGTTGCAGCAGAGCAGGTTAAAA
* *
32750996 ATAGCAGATCTTGCCTTCCTGCACTGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCAG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTG
32751061 GGTTGCAGC-GAAGCAGGTTAAAA
66 GGTTGCAGCAG-AGCAGGTTAAAA
* * *
32751084 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAATACACCAGCCTTGCCTCCCTT
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTG
32751149 GGTTGCAGCAGAGCAGGTTAAAA
66 GGTTGCAGCAGAGCAGGTTAAAA
** * * *
32751172 ATAGCAGATCTTGCCTTCCTGCATTGACAACGAAGCAGATCAAAGACACTAGCATTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTG
32751237 GGTTGCAGCAGAGCAGGTTAAAA
66 GGTTGCAGCAGAGCAGGTTAAAA
*
32751260 ATAGCAGATCTTGCCTTTCTGCACCGACAGCGAAGCAGAT
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGAT
32751300 TGATAACCCT
Statistics
Matches: 351, Mismatches: 39, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
87 1 0.00
88 349 0.99
89 1 0.00
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (88 bp):
ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTG
GGTTGCAGCAGAGCAGGTTAAAA
Found at i:32751376 original size:44 final size:44
Alignment explanation
Indices: 32751313--32751604 Score: 373
Period size: 44 Copynumber: 6.8 Consensus size: 44
32751303 TAACCCTAGC
*
32751313 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* *
32751357 CCTATCTCCATGGTCAGCAGTGGAATAGGTTGAAGATTGAGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * *
32751401 TCTATCTCCCTGGGCAGCAGTGGAATAGATT-AA-A----GAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * * *
32751439 CCTATCTCCCTGGACAACAGTGGTATAGGTTAAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* *
32751483 CCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGAGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * * *
32751527 TCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTGT-AGGT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGA-AT
*
32751571 CCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAA
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAA
32751605 AATAGCAGGT
Statistics
Matches: 213, Mismatches: 28, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
38 30 0.14
39 2 0.01
40 1 0.00
42 1 0.00
43 3 0.01
44 176 0.83
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (44 bp):
CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
Found at i:32751469 original size:126 final size:126
Alignment explanation
Indices: 32751313--32751562 Score: 446
Period size: 126 Copynumber: 2.0 Consensus size: 126
32751303 TAACCCTAGC
* * *
32751313 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCATGGTCAGCAGT
1 CCTATCTCCCTGGACAACAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCATAGTCAGCAGT
32751378 GGAATAGGTTGAAGATTGAGAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGAAT
66 GGAATAGGTTGAAGATTGAGAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGAAT
* *
32751439 CCTATCTCCCTGGACAACAGTGGTATAGGTTAAAGATTGTGAATCCTATCTCCCTAGTCAGCAGT
1 CCTATCTCCCTGGACAACAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCATAGTCAGCAGT
*
32751504 GGAATAGGTTGAAGATTGAGAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGA
66 GGAATAGGTTGAAGATTGAGAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGA
32751563 TTGTAGGTCC
Statistics
Matches: 118, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
126 118 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (126 bp):
CCTATCTCCCTGGACAACAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCATAGTCAGCAGT
GGAATAGGTTGAAGATTGAGAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGAAT
Found at i:32752058 original size:44 final size:43
Alignment explanation
Indices: 32751963--32752068 Score: 106
Period size: 44 Copynumber: 2.4 Consensus size: 43
32751953 TCGCATCTGG
*
32751963 TCTTATCTCCCTAAAATTGCAGTGGGGTAGACTGAATGAGCAAA
1 TCTTATCTCCCTAAAATTGCAGTGGAGTAGACTGAATGAG-AAA
* * * * *
32752007 TCCTATCTCCCTAAAGTTGTAGTGGAGTAGATTAGAATGATG-GA
1 TCTTATCTCCCTAAAATTGCAGTGGAGTAGACT-GAATGA-GAAA
* *
32752051 TCTTATCTCTCTGAAATT
1 TCTTATCTCCCTAAAATT
32752069 ACAGAAGAGC
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
44 43 0.86
45 6 0.12
46 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (43 bp):
TCTTATCTCCCTAAAATTGCAGTGGAGTAGACTGAATGAGAAA
Found at i:32755785 original size:4 final size:4
Alignment explanation
Indices: 32755778--32755820 Score: 50
Period size: 4 Copynumber: 10.5 Consensus size: 4
32755768 TTCCCTTTTT
* * *
32755778 TTTC TTTC TTTAT TTTT TTTC TTTT TTTC TTTC TTTC TTTC TT
1 TTTC TTTC TTT-C TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT
32755821 CAAGAACAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
4 31 0.91
5 3 0.09
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.81
Consensus pattern (4 bp):
TTTC
Found at i:32770807 original size:53 final size:53
Alignment explanation
Indices: 32770717--32770822 Score: 140
Period size: 53 Copynumber: 2.0 Consensus size: 53
32770707 TCATGACAGT
* * *
32770717 AAAGTAGACAATATCGTGTAAAACTATAATTAGTGGGTTATGACATCATATGG
1 AAAGAAGACAATATCGTGTAAAACCATAACTAGTGGGTTATGACATCATATGG
* * * * *
32770770 AAAGAAGACCATATCGTGTAAGACCGTAACTGGTGGGTTATGGCATCATATGG
1 AAAGAAGACAATATCGTGTAAAACCATAACTAGTGGGTTATGACATCATATGG
32770823 GAAAATTTAA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.27
Consensus pattern (53 bp):
AAAGAAGACAATATCGTGTAAAACCATAACTAGTGGGTTATGACATCATATGG
Found at i:32770980 original size:29 final size:29
Alignment explanation
Indices: 32770948--32771046 Score: 83
Period size: 29 Copynumber: 3.3 Consensus size: 29
32770938 AAAAGAAAAA
*
32770948 CTTTGTGGCAAAACTCTAGACAGGAAAGC
1 CTTTGTGGCAAAACTCTAGAAAGGAAAGC
* * * * * *
32770977 CTTTGTAGTAAGTACTGGATGGAAAGGACAGC
1 CTTTGTGGCAA-AACT--CTAGAAAGGAAAGC
*
32771009 CTTTATGGCAAAACTCTAGATAA-GAAAGC
1 CTTTGTGGCAAAACTCTAGA-AAGGAAAGC
32771038 CTTTGTGGC
1 CTTTGTGGC
32771047 GAGTACTAGA
Statistics
Matches: 51, Mismatches: 15, Indels: 8
0.69 0.20 0.11
Matches are distributed among these distances:
29 25 0.49
30 5 0.10
31 3 0.06
32 18 0.35
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.25
Consensus pattern (29 bp):
CTTTGTGGCAAAACTCTAGAAAGGAAAGC
Found at i:32771052 original size:61 final size:61
Alignment explanation
Indices: 32770948--32771202 Score: 253
Period size: 61 Copynumber: 4.2 Consensus size: 61
32770938 AAAAGAAAAA
* * * * *
32770948 CTTTGTGGCAAAACTCTAGACAGGAAAGCCTTTGTAGTAAGTACTGGATGGAAAGGACAGC
1 CTTTGTGGCAAAACTCTAGACAAGAAAGCCTTTGTGGCAAGTACTGGATGTAAAGAACAGC
* * * * * *
32771009 CTTTATGGCAAAACTCTAGATAAGAAAGCCTTTGTGGCGAGTACTAGATGTAAATAACAAC
1 CTTTGTGGCAAAACTCTAGACAAGAAAGCCTTTGTGGCAAGTACTGGATGTAAAGAACAGC
* * * * * * *
32771070 CTTTGTGGAAAAATTTTGGACAAGAAAACCTTTGTGGTAAGTACTGGATGTAAAGAACA-A
1 CTTTGTGGCAAAACTCTAGACAAGAAAGCCTTTGTGGCAAGTACTGGATGTAAAGAACAGC
* * * * * *
32771130 CTGTTGTGGCAAAAATCTGGACATGAAAGCCTTTATGGCAAGTATTGAATGTAAA-AGACAGC
1 CT-TTGTGGCAAAACTCTAGACAAGAAAGCCTTTGTGGCAAGTACTGGATGTAAAGA-ACAGC
*
32771192 TTTTGTGGCAA
1 CTTTGTGGCAA
32771203 GTACTGGATG
Statistics
Matches: 157, Mismatches: 34, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
60 3 0.02
61 153 0.97
62 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (61 bp):
CTTTGTGGCAAAACTCTAGACAAGAAAGCCTTTGTGGCAAGTACTGGATGTAAAGAACAGC
Found at i:32771199 original size:122 final size:122
Alignment explanation
Indices: 32770948--32771173 Score: 283
Period size: 122 Copynumber: 1.9 Consensus size: 122
32770938 AAAAGAAAAA
* * * * * * * *
32770948 CTTTGTGGCAAAACTCTAGACAGGAAAGCCTTTGTAGTAAGTACTGGATGGAAAGGACAGCCTTT
1 CTTTGTGGAAAAATTTTGGACAAGAAAACCTTTGTAGTAAGTACTGGATGGAAAGAACAGACTTT
* * * *
32771013 ATGGCAAAACTCTAGATAAGAAAGCCTTTGTGGCGAGTACTAGATGTAAATAACAAC
66 ATGGCAAAAATCTAGACAAGAAAGCCTTTATGGCAAGTACTAGATGTAAATAACAAC
* *
32771070 CTTTGTGGAAAAATTTTGGACAAGAAAACCTTTGTGGTAAGTACTGGATGTAAAGAACA-ACTGT
1 CTTTGTGGAAAAATTTTGGACAAGAAAACCTTTGTAGTAAGTACTGGATGGAAAGAACAGACT-T
* * *
32771134 TGTGGCAAAAATCTGGACATGAAAGCCTTTATGGCAAGTA
65 TATGGCAAAAATCTAGACAAGAAAGCCTTTATGGCAAGTA
32771174 TTGAATGTAA
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
121 2 0.02
122 84 0.98
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (122 bp):
CTTTGTGGAAAAATTTTGGACAAGAAAACCTTTGTAGTAAGTACTGGATGGAAAGAACAGACTTT
ATGGCAAAAATCTAGACAAGAAAGCCTTTATGGCAAGTACTAGATGTAAATAACAAC
Found at i:32771201 original size:32 final size:32
Alignment explanation
Indices: 32771157--32771234 Score: 102
Period size: 32 Copynumber: 2.4 Consensus size: 32
32771147 TGGACATGAA
* *
32771157 AGCCTTTATGGCAAGTATTGAATGTAAAAGAC
1 AGCCTTTGTGGCAAGTACTGAATGTAAAAGAC
* * * *
32771189 AGCTTTTGTGGCAAGTACTGGATGTAAAGGTC
1 AGCCTTTGTGGCAAGTACTGAATGTAAAAGAC
32771221 AGCCTTTGTGGCAA
1 AGCCTTTGTGGCAA
32771235 AAATCTAGAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (32 bp):
AGCCTTTGTGGCAAGTACTGAATGTAAAAGAC
Found at i:32771211 original size:93 final size:93
Alignment explanation
Indices: 32771091--32771293 Score: 246
Period size: 93 Copynumber: 2.2 Consensus size: 93
32771081 AATTTTGGAC
* * * *
32771091 AAGAAAACCTTTGTGGTAAGTACTGGATGTAAAGAACA-ACTGTTGTGGCAAAAATCTGGACATG
1 AAGACAACCTTTGTGGCAAGTACTGGATGTAAAGAACAGACT-TTGTGGCAAAAATCTAGACAGG
* *
32771155 AAAGCCTTTATGGCAAGTATTGAATGTAA
65 AAAGACTTTATGGCAAGTATTGAATATAA
* * ** * *
32771184 AAGACAGCTTTTGTGGCAAGTACTGGATGTAAAGGTCAGCCTTTGTGGCAAAAATCTAGATAGGA
1 AAGACAACCTTTGTGGCAAGTACTGGATGTAAAGAACAGACTTTGTGGCAAAAATCTAGACAGGA
* * *
32771249 AAGATTTTATGGCGAGTATTGGATATAA
66 AAGACTTTATGGCAAGTATTGAATATAA
*
32771277 AGGACAACCTTTGTGGC
1 AAGACAACCTTTGTGGC
32771294 GAAACTTTGG
Statistics
Matches: 91, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
93 89 0.98
94 2 0.02
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (93 bp):
AAGACAACCTTTGTGGCAAGTACTGGATGTAAAGAACAGACTTTGTGGCAAAAATCTAGACAGGA
AAGACTTTATGGCAAGTATTGAATATAA
Found at i:32777665 original size:27 final size:27
Alignment explanation
Indices: 32777635--32777688 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
32777625 GGTCCACATA
* *
32777635 AAATGCATGGGTTGCATGGAATGCATG
1 AAATCCATAGGTTGCATGGAATGCATG
** *
32777662 AAATCCATATTTTGCATGGAGTGCATG
1 AAATCCATAGGTTGCATGGAATGCATG
32777689 CCCAAACTTG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.30
Consensus pattern (27 bp):
AAATCCATAGGTTGCATGGAATGCATG
Found at i:32783123 original size:16 final size:16
Alignment explanation
Indices: 32783102--32783135 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
32783092 TTCTAAGAAG
32783102 TGTGCATGGAATTGAA
1 TGTGCATGGAATTGAA
32783118 TGTGCATGGAATTGAA
1 TGTGCATGGAATTGAA
32783134 TG
1 TG
32783136 GTTTCAATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.06, G:0.32, T:0.32
Consensus pattern (16 bp):
TGTGCATGGAATTGAA
Found at i:32783585 original size:39 final size:39
Alignment explanation
Indices: 32783531--32783640 Score: 175
Period size: 39 Copynumber: 2.8 Consensus size: 39
32783521 TGTAAAAACT
* *
32783531 AAGACACATAATTAAAGTGCAGTGTTTAAGACACATTTA
1 AAGACTCATAATTAAAGTGCAGTATTTAAGACACATTTA
*
32783570 AAGACTTATAATTAAAGTGCAGTATTTAAGACACATTTA
1 AAGACTCATAATTAAAGTGCAGTATTTAAGACACATTTA
* *
32783609 ATGACTCATAATTAAAGTGCAATATTTAAGAC
1 AAGACTCATAATTAAAGTGCAGTATTTAAGAC
32783641 GCATATTTAA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 65 1.00
ACGTcount: A:0.44, C:0.12, G:0.14, T:0.31
Consensus pattern (39 bp):
AAGACTCATAATTAAAGTGCAGTATTTAAGACACATTTA
Found at i:32783812 original size:27 final size:27
Alignment explanation
Indices: 32783761--32783818 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
32783751 CATGTAGCAT
*
32783761 AATGCATGGGATGCATGATTCGCATAA
1 AATGCATGGGATGCATGAATCGCATAA
* *
32783788 AATGCATGGGTTGCATGGAAT-GCATGA
1 AATGCATGGGATGCAT-GAATCGCATAA
32783815 AATG
1 AATG
32783819 AATATTTTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 24 0.89
28 3 0.11
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (27 bp):
AATGCATGGGATGCATGAATCGCATAA
Found at i:32787353 original size:77 final size:77
Alignment explanation
Indices: 32787212--32787367 Score: 269
Period size: 79 Copynumber: 2.0 Consensus size: 77
32787202 TGTTTAACTG
*
32787212 AAAAACTACGTTTTCTGAAAACTATCAATATTTGAAATTTTTTTTTCTAAAAGATAAACGATTTC
1 AAAAACTACGTTTTCTGAAAACTATCAATATTTGAAA-TTTTTTTTCTAAAAGATAAACAATTTC
32787277 TTTCAAAAGGGAAA
65 TTTCAAAA-GGAAA
*
32787291 AAAAACTACGTTTTGTGAAAACTATCAATATTTGAAA-TTTTTTTCTAAAAGATAAACAATTTCT
1 AAAAACTACGTTTTCTGAAAACTATCAATATTTGAAATTTTTTTTCTAAAAGATAAACAATTTCT
32787355 TTCAAAAGGAAA
66 TTCAAAAGGAAA
32787367 A
1 A
32787368 TTATAGACAA
Statistics
Matches: 75, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
76 6 0.08
77 33 0.44
79 36 0.48
ACGTcount: A:0.44, C:0.11, G:0.10, T:0.36
Consensus pattern (77 bp):
AAAAACTACGTTTTCTGAAAACTATCAATATTTGAAATTTTTTTTCTAAAAGATAAACAATTTCT
TTCAAAAGGAAA
Found at i:32809749 original size:20 final size:20
Alignment explanation
Indices: 32809694--32809759 Score: 66
Period size: 20 Copynumber: 3.3 Consensus size: 20
32809684 TTGCACCCCA
32809694 GTGCCCTTGTAAA-CACTTCG
1 GTGCCCTTG-AAAGCACTTCG
* *
32809714 GTGTCCTTGAATGCACTTCG
1 GTGCCCTTGAAAGCACTTCG
32809734 GTGCCCTT-AACAGCACATTC-
1 GTGCCCTTGAA-AGCAC-TTCG
32809754 GTGCCC
1 GTGCCC
32809760 CTGACAACAT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
19 4 0.10
20 32 0.82
21 3 0.08
ACGTcount: A:0.18, C:0.32, G:0.21, T:0.29
Consensus pattern (20 bp):
GTGCCCTTGAAAGCACTTCG
Found at i:32812210 original size:13 final size:13
Alignment explanation
Indices: 32812177--32812215 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
32812167 AGCCATAAGC
*
32812177 TTTTTGTATTTTTT
1 TTTTTGT-TTTGTT
32812191 TTGTTTGTTTTGTT
1 TT-TTTGTTTTGTT
32812205 TTTTTGTTTTG
1 TTTTTGTTTTG
32812216 GCTTGAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 9 0.39
14 9 0.39
15 5 0.22
ACGTcount: A:0.03, C:0.00, G:0.15, T:0.82
Consensus pattern (13 bp):
TTTTTGTTTTGTT
Found at i:32817515 original size:5 final size:5
Alignment explanation
Indices: 32817505--32817532 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
32817495 TTTTTCCACT
32817505 TTTTC TTTTC TTTTC TTTTC TTTTC TTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTT
32817533 AAAAAAACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTC
Found at i:32823074 original size:11 final size:11
Alignment explanation
Indices: 32823060--32823096 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
32823050 AAAAAATAAA
32823060 AAAAATATTTT
1 AAAAATATTTT
32823071 AAAAATATTTT
1 AAAAATATTTT
32823082 --AAA-ATTTT
1 AAAAATATTTT
32823090 AAAAATA
1 AAAAATA
32823097 AAAAAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
8 5 0.22
9 3 0.13
10 3 0.13
11 12 0.52
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:32840527 original size:30 final size:30
Alignment explanation
Indices: 32840468--32840548 Score: 121
Period size: 30 Copynumber: 2.7 Consensus size: 30
32840458 TTTTGACCCC
* *
32840468 AACTTTCCTTAAATAACA-TTTAACGCCTA
1 AACTTTCCTAAAATTACATTTTAACGCCTA
32840497 AACTTTCCTAAAATTACATTTTAAAC-CCTA
1 AACTTTCCTAAAATTACATTTT-AACGCCTA
32840527 AACTTTCCTAAAATTACATTTT
1 AACTTTCCTAAAATTACATTTT
32840549 GACATCAAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
29 16 0.33
30 29 0.60
31 3 0.06
ACGTcount: A:0.38, C:0.22, G:0.01, T:0.38
Consensus pattern (30 bp):
AACTTTCCTAAAATTACATTTTAACGCCTA
Found at i:32840591 original size:30 final size:29
Alignment explanation
Indices: 32840493--32840591 Score: 110
Period size: 30 Copynumber: 3.3 Consensus size: 29
32840483 ACATTTAACG
* *
32840493 CCTAAACTTTCCTAAAATTACATTTTAAA
1 CCTAAATTTTCCTAAAATTACATTTTGAA
*
32840522 CCCTAAACTTTCCTAAAATTACATTTTG-A
1 -CCTAAATTTTCCTAAAATTACATTTTGAA
* * *
32840551 CATCAAATTTTCCCAAAATTACACTTTGAA
1 CCT-AAATTTTCCTAAAATTACATTTTGAA
32840581 CCTAAAATTTT
1 CCT-AAATTTT
32840592 TACTGCATTT
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
28 2 0.03
29 22 0.37
30 36 0.60
ACGTcount: A:0.38, C:0.22, G:0.02, T:0.37
Consensus pattern (29 bp):
CCTAAATTTTCCTAAAATTACATTTTGAA
Found at i:32842285 original size:75 final size:75
Alignment explanation
Indices: 32842074--32842585 Score: 668
Period size: 75 Copynumber: 6.7 Consensus size: 75
32842064 TCAAGAATTA
* * * *
32842074 TTTTCAATTTCTGTGTTTCAAAAATCAAATTATAATGCGAGAGGTGAGTTGAGCCTCGGGCAAAT
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGCACAT
32842139 GCCG-GGATAT
66 GCCGAGG-TAT
* * * * *
32842149 TTTTAAATTTATATTTTTTTCAAAAATCAACTCATAATGCGTGAGGTGAGTTGAGCGTCGGGCAC
1 TTTTCAA-TT-TCTGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGCAC
32842214 ATGCCGAGGTAT
64 ATGCCGAGGTAT
*
32842226 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATGGGAGAGGTGAGTTGAGCCTCGGGCACAT
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGCACAT
*
32842291 GCTGAGGTAT
66 GCCGAGGTAT
* * * *
32842301 TTTTCAATTTATGTTTTTCAAAAATTAAGTCAGAATGCGAGAGGTGAGTTGAGCCTCGGGCACAT
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGCACAT
32842366 GCCGAGGTAT
66 GCCGAGGTAT
* * *
32842376 TTTTCAATTTCTATTTTTTCAAAAATCAACTCAAAATGCGAGAGGTGAGTTTAGCCTCGGGCACA
1 TTTTCAATTTCT-GTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGCACA
*
32842441 TGCTGAGGTAT
65 TGCCGAGGTAT
* * * *
32842452 TTTTCAAATTCTGTTTTTTCAAAAATCAACTCATAATGCGAGAGGTAAGTTAAGCCTCGGGTTAC
1 TTTTCAATTTCTG-TTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGG-CAC
*
32842517 ACT-CCAAGGTAT
64 A-TGCCGAGGTAT
* * *
32842529 TTTCCAATTTATGTTTTTTTAAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAG
1 TTTTCAATTTCTG--TTTTT--CAAAAATCAACTCATAATGCGAGAGGTGAGTTGAG
32842586 GTTCGGGTCA
Statistics
Matches: 384, Mismatches: 43, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
75 146 0.38
76 116 0.30
77 81 0.21
78 9 0.02
80 32 0.08
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.34
Consensus pattern (75 bp):
TTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGCACAT
GCCGAGGTAT
Done.