Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 107 of 240
Found at i:33074606 original size:46 final size:46
Alignment explanation
Indices: 33074549--33074716 Score: 228
Period size: 46 Copynumber: 3.7 Consensus size: 46
33074539 AGTGTTATTG
* * * *
33074549 ATCAATGGTAGCTTCGGCTAAATTTCAATGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTTCAGCTACATTTCAGTGGTAGCTACGGCTACAT
* *
33074595 ATCAGTGGTAGCTTCAGCTACATTTTAGTGGTAGCAACGGCTACAT
1 ATCAGTGGTAGCTTCAGCTACATTTCAGTGGTAGCTACGGCTACAT
* * *
33074641 ATCAGTGGTAGCTTCAACTACATTTCAGTGGTAGCTACGACTACGT
1 ATCAGTGGTAGCTTCAGCTACATTTCAGTGGTAGCTACGGCTACAT
* * *
33074687 ATCAGTGGTAACTTCGGCTACATATCAGTG
1 ATCAGTGGTAGCTTCAGCTACATTTCAGTG
33074717 TGGCACTTAT
Statistics
Matches: 107, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 107 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (46 bp):
ATCAGTGGTAGCTTCAGCTACATTTCAGTGGTAGCTACGGCTACAT
Found at i:33075733 original size:41 final size:41
Alignment explanation
Indices: 33075682--33075941 Score: 333
Period size: 41 Copynumber: 6.3 Consensus size: 41
33075672 GCGTTTTCAA
* ** **
33075682 AAAAGCGCCGCTAATTCTCAGGGCTTTAGCGGCGTTTTTAA
1 AAAAGCGCCGCTAATGCTGGGGGCTTTAGCGGCGTTTTTGG
* * * * *
33075723 AAAAGTGCCGCTAATGCTCGGTGTTTTAGCGGCGTTTTTTG
1 AAAAGCGCCGCTAATGCTGGGGGCTTTAGCGGCGTTTTTGG
* * * * *
33075764 AAAAGTGTCGCTAATGCTAGGGGATTTAGCGGCATTTTTGG
1 AAAAGCGCCGCTAATGCTGGGGGCTTTAGCGGCGTTTTTGG
*
33075805 GAAAGCGCCGCTAATGCTGGGGGCTTTAGCGGCGTTTTTGG
1 AAAAGCGCCGCTAATGCTGGGGGCTTTAGCGGCGTTTTTGG
*
33075846 AAAAGCACCGCTAATGCTGGGGGCTTTAGCGGCGTTTTTGG
1 AAAAGCGCCGCTAATGCTGGGGGCTTTAGCGGCGTTTTTGG
* *
33075887 AAAAGCACCGCTAATGCTGGGGGATTTAGCGGCGTTTTT-G
1 AAAAGCGCCGCTAATGCTGGGGGCTTTAGCGGCGTTTTTGG
33075927 ATAAAGCGCCGCTAA
1 A-AAAGCGCCGCTAA
33075942 AAACATTTTA
Statistics
Matches: 195, Mismatches: 23, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 2 0.01
41 193 0.99
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (41 bp):
AAAAGCGCCGCTAATGCTGGGGGCTTTAGCGGCGTTTTTGG
Found at i:33076326 original size:14 final size:15
Alignment explanation
Indices: 33076291--33076329 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
33076281 TATTTTAAGG
**
33076291 TTTAGGGAGCATGGA
1 TTTAGGGATTATGGA
33076306 TTTAGGGATTATGGA
1 TTTAGGGATTATGGA
33076321 -TTAGGGATT
1 TTTAGGGATT
33076330 GTGGTTTAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.26, C:0.03, G:0.36, T:0.36
Consensus pattern (15 bp):
TTTAGGGATTATGGA
Found at i:33076478 original size:24 final size:23
Alignment explanation
Indices: 33076438--33076492 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 23
33076428 TTGGGTTTAG
*
33076438 ATTAATTATTTTTTAATTTATAT
1 ATTAAATATTTTTTAATTTATAT
*
33076461 TTTAAATATGTTTTTAATTTATAT
1 ATTAAATAT-TTTTTAATTTATAT
33076485 ATTAAATA
1 ATTAAATA
33076493 ATTTCATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 7 0.25
24 21 0.75
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (23 bp):
ATTAAATATTTTTTAATTTATAT
Found at i:33076692 original size:7 final size:7
Alignment explanation
Indices: 33076682--33076729 Score: 51
Period size: 7 Copynumber: 6.9 Consensus size: 7
33076672 GGTTTGAGAT
33076682 TTAGGGG
1 TTAGGGG
33076689 TTAGGGG
1 TTAGGGG
* * *
33076696 TAAAGAG
1 TTAGGGG
33076703 TTAGGGG
1 TTAGGGG
33076710 TTAGGGG
1 TTAGGGG
* *
33076717 TTAAGAG
1 TTAGGGG
33076724 TTAGGG
1 TTAGGG
33076730 ATTTAGGGTT
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.25, C:0.00, G:0.48, T:0.27
Consensus pattern (7 bp):
TTAGGGG
Found at i:33076739 original size:21 final size:21
Alignment explanation
Indices: 33076682--33076729 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
33076672 GGTTTGAGAT
*
33076682 TTAGGGGTTAGGGGTAAAGAG
1 TTAGGGGTTAGGGGTTAAGAG
33076703 TTAGGGGTTAGGGGTTAAGAG
1 TTAGGGGTTAGGGGTTAAGAG
33076724 TTAGGG
1 TTAGGG
33076730 ATTTAGGGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.25, C:0.00, G:0.48, T:0.27
Consensus pattern (21 bp):
TTAGGGGTTAGGGGTTAAGAG
Found at i:33076765 original size:339 final size:332
Alignment explanation
Indices: 33076132--33076805 Score: 764
Period size: 339 Copynumber: 2.0 Consensus size: 332
33076122 TACTGATTAT
* *
33076132 TTTTTAATTTATATATTAAAAATTTTCTTATATAATTGTAAAAGAGATAGTATTAATTTTAAAAT
1 TTTTTAATTTATATATTAAAAATTTTCATATATAATTGAAAAAGAGATAGTATTAATTTTAAAAT
* *
33076197 ATTGAATTAATTATCACTATAGTTTAGGATTTTTGGTTTAAGGTATATGATTTATTTAAGATTTA
66 ATTGAATTAATTATCACTATAGTTTAGGATTTTTGATTTAAGGTATATGATTAATTTAAGATTTA
* * * * *
33076262 AGGCCGGTTTAGGAGTTACTATTTTAAGGTTTAGGGAGCATGGATTTAGGGATTATGGATTAGGG
131 AGGCCAGTTTAAGAGTTACTATTTTAAGATTTAGGGAACATGGATTTAGGGATTATGGATTAAGG
* * * *
33076327 ATTGTGGTTTAAGGGTTGGGATTTAAGGTTTAGGGGTTAGGGGTTTGGTTGTTAAGAGCTAGGGA
196 ATTGAGATTTAAGGGTTGGGAGTAAAGGTTTAGGGGTTA--GG--TGG-TGTTAAGAGCTAGGGA
* *
33076392 TTTAAGGTTTAGGGATTCATGGGTCGGGTTAGGGTTTTGGGTTTAGATTAATTATTTTTTAATTT
256 TTTAAGGTTTAAGGA-TCA-GGGTAGGGTTAGGGTTTTGGGTTTAGATTAATTATTTTTTAATTT
33076457 ATATTTTAAATATG
319 ATATTTTAAATATG
33076471 TTTTTAATTTATATATTAAATAA-TTTCATATATAATTGAAAAAGATAAGATAGTATTAATTTTA
1 TTTTTAATTTATATATTAAA-AATTTTCATATATAATTGAAAAAG---AGATAGTATTAATTTTA
* * *
33076535 AAATATTTAATTAATTTTCA-TAATAGTTTAGG-TTTATATGATTTATA-GTATATGGTTAATTT
62 AAATATTGAATTAATTATCACT-ATAGTTTAGGATTT-T-TGATTTA-AGGTATATGATTAATTT
* *
33076597 AAGATTTAAGGCCAGTTTAAGAGTTACTATTTTAAGATTTGGGGATTATATATGGATTTAGGGAT
123 AAGATTTAAGGCCAGTTTAAGAGTTACTATTTTAAGATTTAGGG---A-ACATGGATTTAGGGAT
* * *
33076662 TATGGTTTAAGGTTTGAGATTTAGGGGTTAGGG-GTAAAGAG-TTAGGGGTTA-G-GG-GTTAAG
184 TATGGATTAAGGATTGAGATTTAAGGGTT-GGGAGTAAAG-GTTTAGGGGTTAGGTGGTGTTAAG
* * * * * *
33076722 AGTTAGGGATTTAGGGTTTCA--A--A-GGTCGGGTTAAGGTTTAGGGTTTAGATTAATTAGTTT
247 AGCTAGGGATTTAAGGTTTAAGGATCAGGGTAGGGTTAGGGTTTTGGGTTTAGATTAATTA--TT
* *
33076782 TTTTAATTTGTATATTAAATATG
310 TTTTAATTTATATTTTAAATATG
33076805 T
1 T
33076806 CCTTATATAA
Statistics
Matches: 290, Mismatches: 29, Indels: 37
0.81 0.08 0.10
Matches are distributed among these distances:
332 31 0.11
334 25 0.09
337 1 0.00
339 62 0.21
340 2 0.01
341 6 0.02
342 46 0.16
343 59 0.20
344 2 0.01
346 1 0.00
347 51 0.18
348 4 0.01
ACGTcount: A:0.31, C:0.03, G:0.23, T:0.44
Consensus pattern (332 bp):
TTTTTAATTTATATATTAAAAATTTTCATATATAATTGAAAAAGAGATAGTATTAATTTTAAAAT
ATTGAATTAATTATCACTATAGTTTAGGATTTTTGATTTAAGGTATATGATTAATTTAAGATTTA
AGGCCAGTTTAAGAGTTACTATTTTAAGATTTAGGGAACATGGATTTAGGGATTATGGATTAAGG
ATTGAGATTTAAGGGTTGGGAGTAAAGGTTTAGGGGTTAGGTGGTGTTAAGAGCTAGGGATTTAA
GGTTTAAGGATCAGGGTAGGGTTAGGGTTTTGGGTTTAGATTAATTATTTTTTAATTTATATTTT
AAATATG
Found at i:33077102 original size:20 final size:20
Alignment explanation
Indices: 33077077--33077119 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
33077067 AAATTATAAG
33077077 AAAAATAAAATACAAAAA-TA
1 AAAAATAAAATA-AAAAACTA
*
33077097 AAAAATGAAATAAAAAACTA
1 AAAAATAAAATAAAAAACTA
33077117 AAA
1 AAA
33077120 TTTATAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.79, C:0.05, G:0.02, T:0.14
Consensus pattern (20 bp):
AAAAATAAAATAAAAAACTA
Found at i:33077120 original size:13 final size:13
Alignment explanation
Indices: 33077078--33077120 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
33077068 AATTATAAGA
* *
33077078 AAAATAAAATACA
1 AAAATAAAAAACT
33077091 AAAATAAAAAA-T
1 AAAATAAAAAACT
*
33077103 GAAATAAAAAACT
1 AAAATAAAAAACT
33077116 AAAAT
1 AAAAT
33077121 TTATAATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
12 10 0.40
13 15 0.60
ACGTcount: A:0.77, C:0.05, G:0.02, T:0.16
Consensus pattern (13 bp):
AAAATAAAAAACT
Found at i:33081073 original size:19 final size:19
Alignment explanation
Indices: 33081049--33081114 Score: 78
Period size: 19 Copynumber: 3.3 Consensus size: 19
33081039 TAGTTTGATA
33081049 AATTTTATGTGTGGTGTTT
1 AATTTTATGTGTGGTGTTT
* * *
33081068 AATTTTTTGTTGCTGTCTGTGT
1 AATTTTATG-TG-TG-GTGTTT
33081090 AATTTTATGTGTGGTGTTT
1 AATTTTATGTGTGGTGTTT
33081109 AATTTT
1 AATTTT
33081115 TTGTTACTGT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
19 18 0.47
20 4 0.11
21 4 0.11
22 12 0.32
ACGTcount: A:0.15, C:0.03, G:0.23, T:0.59
Consensus pattern (19 bp):
AATTTTATGTGTGGTGTTT
Found at i:33081089 original size:24 final size:24
Alignment explanation
Indices: 33081062--33081140 Score: 82
Period size: 19 Copynumber: 3.5 Consensus size: 24
33081052 TTTATGTGTG
33081062 GTGTTTAATTTTTTGTTGCTGTCT
1 GTGTTTAATTTTTTGTTGCTGTCT
*
33081086 GTG--TAATTTTATG-TG-TG---
1 GTGTTTAATTTTTTGTTGCTGTCT
*
33081103 GTGTTTAATTTTTTGTTACTGTCT
1 GTGTTTAATTTTTTGTTGCTGTCT
33081127 GTGTTCTAATTTTT
1 GTGTT-TAATTTTT
33081141 CATATGTATT
Statistics
Matches: 44, Mismatches: 3, Indels: 15
0.71 0.05 0.24
Matches are distributed among these distances:
17 3 0.07
19 9 0.20
20 3 0.07
21 4 0.09
22 9 0.20
24 8 0.18
25 8 0.18
ACGTcount: A:0.13, C:0.06, G:0.20, T:0.61
Consensus pattern (24 bp):
GTGTTTAATTTTTTGTTGCTGTCT
Found at i:33081106 original size:41 final size:41
Alignment explanation
Indices: 33081049--33081130 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
33081039 TAGTTTGATA
*
33081049 AATTTTATGTGTGGTGTTTAATTTTTTGTTGCTGTCTGTGT
1 AATTTTATGTGTGGTGTTTAATTTTTTGTTACTGTCTGTGT
33081090 AATTTTATGTGTGGTGTTTAATTTTTTGTTACTGTCTGTGT
1 AATTTTATGTGTGGTGTTTAATTTTTTGTTACTGTCTGTGT
33081131 TCTAATTTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.13, C:0.05, G:0.23, T:0.59
Consensus pattern (41 bp):
AATTTTATGTGTGGTGTTTAATTTTTTGTTACTGTCTGTGT
Found at i:33081306 original size:35 final size:35
Alignment explanation
Indices: 33081238--33081303 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
33081228 TAATTGTGTT
33081238 ATTAATTTATTATTTTAAATTTTAAAATTAAATTC
1 ATTAATTTATTATTTTAAATTTTAAAATTAAATTC
* *
33081273 ATTAATTT-TTATATTT-AGTTTTAAAGTTAAA
1 ATTAATTTATTAT-TTTAAATTTTAAAATTAAA
33081304 ATTTTCATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 17 0.61
35 11 0.39
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.55
Consensus pattern (35 bp):
ATTAATTTATTATTTTAAATTTTAAAATTAAATTC
Found at i:33081561 original size:43 final size:43
Alignment explanation
Indices: 33081457--33081702 Score: 255
Period size: 43 Copynumber: 5.7 Consensus size: 43
33081447 GTTATATTTT
* * * * * *
33081457 TAGCGGCGTTTTTGCGAAAAGCGCCGCTAAAGGT-TTGTTCTT
1 TAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGGTCGTGGTCTA
** * *
33081499 TAGCGGCGTTTGTGATAAAAGCGCTGCTAAAGATCATGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGGTCGTGGTCTA
* * * *
33081542 TAGCGGCGTTTGTGGTAAAAGCGCCGTTAAAGATCGTGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGGTCGTGGTCTA
* *
33081585 TAGCGGCGTTTGTGGGAAAAGCG-TCGGTAAAGGGCGTGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCT-GCTAAAGGTCGTGGTCTA
* * * * *
33081628 TAGCGGCGTTTGCGGGAGAAGCGCTGCTAAAGGTCTTGGCCTT
1 TAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGGTCGTGGTCTA
*
33081671 TAGCGGCGTTTGCGGGAAAAGCG-TCGCTAAAG
1 TAGCGGCGTTTGTGGGAAAAGCGCT-GCTAAAG
33081703 TTAGCGACGC
Statistics
Matches: 175, Mismatches: 25, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
42 30 0.17
43 144 0.82
44 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.34, T:0.26
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGGTCGTGGTCTA
Found at i:33081616 original size:86 final size:85
Alignment explanation
Indices: 33081457--33081702 Score: 289
Period size: 86 Copynumber: 2.9 Consensus size: 85
33081447 GTTATATTTT
* * **
33081457 TAGCGGCGTTTTTGCGAAAAGCGCCGCTAAAGGT-TTGTTCTTTAGCGGCGTTTGTGATAAAAGC
1 TAGCGGCGTTTGTG-GAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAAGC
*
33081521 G-CTGCTAAAGATCATGGTCTA
65 GTC-GCTAAAGAGCATGGTCTA
* * * *
33081542 TAGCGGCGTTTGTGGTAAAAGCGCCGTTAAAGATCGTGGTCTATAGCGGCGTTTGTGGGAAAAGC
1 TAGCGGCGTTTGTGG-AAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAAGC
* * *
33081607 GTCGGTAAAGGGCGTGGTCTA
65 GTCGCTAAAGAGCATGGTCTA
* * * * *
33081628 TAGCGGCGTTTGCGGGAGAAGCGCTGCTAAAGGTCTTGGCCTTTAGCGGCGTTTGCGGGAAAAGC
1 TAGCGGCGTTTG-TGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAAGC
33081693 GTCGCTAAAG
65 GTCGCTAAAG
33081703 TTAGCGACGC
Statistics
Matches: 135, Mismatches: 22, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
84 1 0.01
85 29 0.21
86 102 0.76
87 3 0.02
ACGTcount: A:0.22, C:0.17, G:0.34, T:0.26
Consensus pattern (85 bp):
TAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAAGCG
TCGCTAAAGAGCATGGTCTA
Found at i:33081658 original size:129 final size:128
Alignment explanation
Indices: 33081457--33081702 Score: 303
Period size: 129 Copynumber: 1.9 Consensus size: 128
33081447 GTTATATTTT
* ** * * * *
33081457 TAGCGGCGTTTTTGCGAAAAGCGCCGCTAAAGGTTTGTTCTTTAGCGGCGTTTGTGATAAAAGCG
1 TAGCGGCGTTTGTGCGAAAAGCGCCGCTAAAGGCGTGGTCTATAGCGGCGTTTGCGAGAAAAGCG
* * * *
33081522 CTGCTAAAGATCATGGTCTATAGCGGCGTTTGTGGTAAAAGCGCCGTTAAAGATCGTGGTCTA
66 CTGCTAAAGATCATGGCCTATAGCGGCGTTTGCGGGAAAAGCGCCGCTAAAGATCGTGGTCTA
* * * * *
33081585 TAGCGGCGTTTGTGGGAAAAGCGTCGGTAAAGGGCGTGGTCTATAGCGGCGTTTGCGGGAGAAGC
1 TAGCGGCGTTTGTGCGAAAAGCGCCGCTAAA-GGCGTGGTCTATAGCGGCGTTTGCGAGAAAAGC
* * * *
33081650 GCTGCTAAAGGTCTTGGCCTTTAGCGGCGTTTGCGGGAAAAGCGTCGCTAAAG
65 GCTGCTAAAGATCATGGCCTATAGCGGCGTTTGCGGGAAAAGCGCCGCTAAAG
33081703 TTAGCGACGC
Statistics
Matches: 97, Mismatches: 20, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
128 27 0.28
129 70 0.72
ACGTcount: A:0.22, C:0.17, G:0.34, T:0.26
Consensus pattern (128 bp):
TAGCGGCGTTTGTGCGAAAAGCGCCGCTAAAGGCGTGGTCTATAGCGGCGTTTGCGAGAAAAGCG
CTGCTAAAGATCATGGCCTATAGCGGCGTTTGCGGGAAAAGCGCCGCTAAAGATCGTGGTCTA
Found at i:33081772 original size:66 final size:66
Alignment explanation
Indices: 33081666--33081797 Score: 264
Period size: 66 Copynumber: 2.0 Consensus size: 66
33081656 AAAGGTCTTG
33081666 GCCTTTAGCGGCGTTTGCGGGAAAAGCGTCGCTAAAGTTAGCGACGCGGTCTTTAGCGACATTTT
1 GCCTTTAGCGGCGTTTGCGGGAAAAGCGTCGCTAAAGTTAGCGACGCGGTCTTTAGCGACATTTT
33081731 C
66 C
33081732 GCCTTTAGCGGCGTTTGCGGGAAAAGCGTCGCTAAAGTTAGCGACGCGGTCTTTAGCGACATTTT
1 GCCTTTAGCGGCGTTTGCGGGAAAAGCGTCGCTAAAGTTAGCGACGCGGTCTTTAGCGACATTTT
33081797 C
66 C
33081798 TCCGGCACTT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (66 bp):
GCCTTTAGCGGCGTTTGCGGGAAAAGCGTCGCTAAAGTTAGCGACGCGGTCTTTAGCGACATTTT
C
Found at i:33082572 original size:106 final size:106
Alignment explanation
Indices: 33082387--33082600 Score: 428
Period size: 106 Copynumber: 2.0 Consensus size: 106
33082377 TTCACTAATT
33082387 TGACAAAGTTGGTAAGTGTTACATGGACTCACACTCAAGTGATAGATTTATTATGATTGTTGAAG
1 TGACAAAGTTGGTAAGTGTTACATGGACTCACACTCAAGTGATAGATTTATTATGATTGTTGAAG
33082452 TTGAATTCAATTAAGTGATTTCACCAATTGGATATTGTATA
66 TTGAATTCAATTAAGTGATTTCACCAATTGGATATTGTATA
33082493 TGACAAAGTTGGTAAGTGTTACATGGACTCACACTCAAGTGATAGATTTATTATGATTGTTGAAG
1 TGACAAAGTTGGTAAGTGTTACATGGACTCACACTCAAGTGATAGATTTATTATGATTGTTGAAG
33082558 TTGAATTCAATTAAGTGATTTCACCAATTGGATATTGTATA
66 TTGAATTCAATTAAGTGATTTCACCAATTGGATATTGTATA
33082599 TG
1 TG
33082601 GCAAGATGTG
Statistics
Matches: 108, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
106 108 1.00
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (106 bp):
TGACAAAGTTGGTAAGTGTTACATGGACTCACACTCAAGTGATAGATTTATTATGATTGTTGAAG
TTGAATTCAATTAAGTGATTTCACCAATTGGATATTGTATA
Found at i:33083454 original size:6 final size:6
Alignment explanation
Indices: 33083443--33083468 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
33083433 AGTATAGACA
33083443 TTATAT TTATAT TTATAT TTATAT TT
1 TTATAT TTATAT TTATAT TTATAT TT
33083469 GAATTTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTATAT
Found at i:33083858 original size:16 final size:16
Alignment explanation
Indices: 33083829--33083886 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
33083819 CTTATTCGTT
* *
33083829 CCACTTCACCAGCTCG
1 CCACTTCGCTAGCTCG
*
33083845 CCGCTTCGCTAGCTCG
1 CCACTTCGCTAGCTCG
* *
33083861 CCCCTTCGCCAGCTCG
1 CCACTTCGCTAGCTCG
*
33083877 TCACTTCGCT
1 CCACTTCGCT
33083887 CCAAACTCGT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.10, C:0.48, G:0.17, T:0.24
Consensus pattern (16 bp):
CCACTTCGCTAGCTCG
Found at i:33092373 original size:27 final size:26
Alignment explanation
Indices: 33092342--33092519 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 26
33092332 TAAATTGTAC
33092342 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
33092369 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
33092395 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
33092423 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
*
33092451 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
33092478 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
33092505 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33092520 GACTCGATAT
Statistics
Matches: 130, Mismatches: 16, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
26 1 0.01
27 104 0.80
28 25 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:33092458 original size:82 final size:81
Alignment explanation
Indices: 33092343--33092498 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33092333 AAATTGTACA
* *
33092343 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
33092407 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
33092424 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
33092489 TGCGAGTTGA
65 TGCGAATTGA
33092499 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 17 0.25
82 49 0.73
83 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33092510 original size:82 final size:81
Alignment explanation
Indices: 33092339--33092519 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
33092329 GATTAAATTG
* *
33092339 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
33092404 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
33092420 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
33092484 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
33092502 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33092520 GACTCGATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 20 0.24
82 64 0.76
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33101849 original size:26 final size:26
Alignment explanation
Indices: 33101820--33101869 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
33101810 TTTTACATCG
*
33101820 TTGCTCACATGAGCTATGAAATGGAT
1 TTGCTCACATGAGCTACGAAATGGAT
*
33101846 TTGCTCACATGAGCTGCGAAATGG
1 TTGCTCACATGAGCTACGAAATGG
33101870 GCTCCTCACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
TTGCTCACATGAGCTACGAAATGGAT
Found at i:33106120 original size:29 final size:29
Alignment explanation
Indices: 33106066--33106121 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
33106056 GCTTTTAAAG
*
33106066 ATATTTACAAAAAGAGACAACTAATTTCA
1 ATATTTACAAAAAGAGACAACAAATTTCA
*
33106095 ATATTTACAAGAAGA-ACAACCAAATTT
1 ATATTTACAAAAAGAGACAA-CAAATTT
33106122 TGCAAATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.17
29 20 0.83
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.27
Consensus pattern (29 bp):
ATATTTACAAAAAGAGACAACAAATTTCA
Found at i:33113747 original size:30 final size:30
Alignment explanation
Indices: 33113710--33113804 Score: 118
Period size: 30 Copynumber: 3.2 Consensus size: 30
33113700 TGAATGTTGC
* *
33113710 CACGGGCGTGTGTCTTAGTCATGTGTGAAA
1 CACGGGCGTGTGTCTCAGCCATGTGTGAAA
*
33113740 CATGGGCGTGTGTCTCAGCCATGTGTGAAA
1 CACGGGCGTGTGTCTCAGCCATGTGTGAAA
* * * * *
33113770 CACGGGCATGTGCCTCAGCCGTGAGTGACA
1 CACGGGCGTGTGTCTCAGCCATGTGTGAAA
33113800 CACGG
1 CACGG
33113805 CCATGCGACA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.20, C:0.23, G:0.34, T:0.23
Consensus pattern (30 bp):
CACGGGCGTGTGTCTCAGCCATGTGTGAAA
Found at i:33119018 original size:16 final size:16
Alignment explanation
Indices: 33118997--33119027 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
33118987 ATCGCTCGTG
33118997 TGGGCCGTAATGGGCT
1 TGGGCCGTAATGGGCT
33119013 TGGGCCGTAATGGGC
1 TGGGCCGTAATGGGC
33119028 CACGTTGGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.19, G:0.45, T:0.23
Consensus pattern (16 bp):
TGGGCCGTAATGGGCT
Found at i:33119539 original size:27 final size:27
Alignment explanation
Indices: 33119281--33119529 Score: 196
Period size: 27 Copynumber: 9.3 Consensus size: 27
33119271 AGAGGTCAAT
* * * * *
33119281 AAATGATCGAATTACCCCCACAAGGTA
1 AAATGACCGAAATACCCCTATAGGGTA
* *
33119308 AAATGACAGAATTA-CCCTCATAGGGTA
1 AAATGACCGAAATACCCCT-ATAGGGTA
* **
33119335 GAATGACTAAAATACCCCTATAGGGTA
1 AAATGACCGAAATACCCCTATAGGGTA
* * * *
33119362 GAATAACCGAAATACCCCCATAGGATA
1 AAATGACCGAAATACCCCTATAGGGTA
* * *
33119389 AAATGACCGAAATACCCCCATAAGGCA
1 AAATGACCGAAATACCCCTATAGGGTA
* * * *** *
33119416 GAATTACCAAAATACCCC-ATAAAATG
1 AAATGACCGAAATACCCCTATAGGGTA
* * * *
33119442 GAATGACCAAAATACCCCCACAGGGTA
1 AAATGACCGAAATACCCCTATAGGGTA
* *
33119469 AAATGACCAAAATACCCCTATAGGTTA
1 AAATGACCGAAATACCCCTATAGGGTA
*
33119496 AAATGACCGAAATACCCTTATAGGGTA
1 AAATGACCGAAATACCCCTATAGGGTA
33119523 AAATGAC
1 AAATGAC
33119530 TGTTATACCC
Statistics
Matches: 180, Mismatches: 39, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
26 24 0.13
27 152 0.84
28 4 0.02
ACGTcount: A:0.43, C:0.23, G:0.15, T:0.18
Consensus pattern (27 bp):
AAATGACCGAAATACCCCTATAGGGTA
Found at i:33119540 original size:107 final size:107
Alignment explanation
Indices: 33119281--33119512 Score: 268
Period size: 107 Copynumber: 2.2 Consensus size: 107
33119271 AGAGGTCAAT
* * * * * *** * *
33119281 AAATGATCGAATTACCCCCACAAGGTAAAATGA-CAGAATTACCCTCATAGGGTAGAATGACTAA
1 AAATGACCGAAATACCCCCATAAGGCAAAATGACCA-AAATACCC-CATAAAATGGAATGACCAA
* * * *
33119345 AATACCCCTATAGGGTAGAATAACCGAAATACCCCCATAGGATA
64 AATACCCCCACAGGGTAAAATAACCAAAATACCCCCATAGGATA
* *
33119389 AAATGACCGAAATACCCCCATAAGGCAGAATTACCAAAATACCCCATAAAATGGAATGACCAAAA
1 AAATGACCGAAATACCCCCATAAGGCAAAATGACCAAAATACCCCATAAAATGGAATGACCAAAA
* * *
33119454 TACCCCCACAGGGTAAAATGACCAAAATACCCCTATAGGTTA
66 TACCCCCACAGGGTAAAATAACCAAAATACCCCCATAGGATA
33119496 AAATGACCGAAATACCC
1 AAATGACCGAAATACCC
33119513 TTATAGGGTA
Statistics
Matches: 104, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
107 68 0.65
108 34 0.33
109 2 0.02
ACGTcount: A:0.44, C:0.25, G:0.15, T:0.17
Consensus pattern (107 bp):
AAATGACCGAAATACCCCCATAAGGCAAAATGACCAAAATACCCCATAAAATGGAATGACCAAAA
TACCCCCACAGGGTAAAATAACCAAAATACCCCCATAGGATA
Found at i:33121138 original size:32 final size:32
Alignment explanation
Indices: 33121075--33121143 Score: 77
Period size: 32 Copynumber: 2.2 Consensus size: 32
33121065 CCTCTTTTGA
* *
33121075 GGTGTCCCCCTGAAGAATCCTACAGCAGTCGC
1 GGTGTCACCCTGAAGAATCCTACAACAGTCGC
* *
33121107 GGTGTCACCCTGAAGGA-CCTTACAACTGTCGC
1 GGTGTCACCCTGAAGAATCC-TACAACAGTCGC
*
33121139 AGTGT
1 GGTGT
33121144 TGCCCGATAG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
31 2 0.06
32 29 0.94
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.22
Consensus pattern (32 bp):
GGTGTCACCCTGAAGAATCCTACAACAGTCGC
Found at i:33123175 original size:12 final size:14
Alignment explanation
Indices: 33123143--33123181 Score: 55
Period size: 12 Copynumber: 2.9 Consensus size: 14
33123133 TATCTCAAAT
*
33123143 TTCAATTTACCATA
1 TTCAATTTATCATA
33123157 TTCAATTTATCA-A
1 TTCAATTTATCATA
33123170 -TCAATTTATCAT
1 TTCAATTTATCAT
33123182 TTCTTTACGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 11 0.48
13 1 0.04
14 11 0.48
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.46
Consensus pattern (14 bp):
TTCAATTTATCATA
Found at i:33128150 original size:23 final size:25
Alignment explanation
Indices: 33128117--33128166 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 25
33128107 ATCGTAATAA
*
33128117 GACAACATTTTAAAAA-TAATATAT
1 GACAACATTTTAAAAACAAATATAT
33128141 GACAA-ATTTTAAAAACAAATATAT
1 GACAACATTTTAAAAACAAATATAT
33128165 GA
1 GA
33128167 TAATAAATCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 10 0.42
24 14 0.58
ACGTcount: A:0.56, C:0.08, G:0.06, T:0.30
Consensus pattern (25 bp):
GACAACATTTTAAAAACAAATATAT
Found at i:33129973 original size:50 final size:50
Alignment explanation
Indices: 33129932--33130574 Score: 392
Period size: 50 Copynumber: 12.9 Consensus size: 50
33129922 ATTTGCCGTC
* * * *
33129932 GTAGCTTTAATCTGTTTCATTGCACGGCCAGGGAAGTAAGATTTGCTGTT
1 GTAGCTTTAATCTGTTTAACTGCACCGCCAGGGAAGTAAGATTCGCTGTT
* * * ** * * * *
33129982 GTGGCTTTAATCTTTTTAACTACAATGTCGGGGAAGCAAGATTCACTGTT
1 GTAGCTTTAATCTGTTTAACTGCACCGCCAGGGAAGTAAGATTCGCTGTT
* **
33130032 GTGGCTTTAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCTGTT
1 GTAGCTTTAATCTGTTTAACTGCACCGCCAGGGAAGTAAGATTCGCTGTT
* * * ** * * * * * *
33130082 GTAGCTTTAATCTTTTTAATTGTAATGTCGGGGAAGCAAGATTCACCGAT
1 GTAGCTTTAATCTGTTTAACTGCACCGCCAGGGAAGTAAGATTCGCTGTT
* * ** * * * * * *
33130132 GTGGCTTTAATCTATTCCACTACATCGCCTGGGGAGTAAGATTCACTATT
1 GTAGCTTTAATCTGTTTAACTGCACCGCCAGGGAAGTAAGATTCGCTGTT
* ** * * * *
33130182 GTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGGTTCG-TCGTT
1 GTAGCTTTAATCTGTTTAACTGCACCGCCAGGGAAGTAAGATTCGCT-GTT
* * ** * *
33130232 GTGGCCTTAATCTGTTCCACTGCACCGCTAGGGAAATAAGATTCGCTGTT
1 GTAGCTTTAATCTGTTTAACTGCACCGCCAGGGAAGTAAGATTCGCTGTT
* ** * * * * * *
33130282 GTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGAT
1 GTAGCTTTAATCTGTTTAACTGCACCGCCAGGGAAGTAAGATTCGCTGTT
* ** * ** *
33130332 GTGGCTTTAATCTGTTCCACTACATTGCCTGGG-AGTAAGATTCGCTGTT
1 GTAGCTTTAATCTGTTTAACTGCACCGCCAGGGAAGTAAGATTCGCTGTT
* ** * * * * *
33130381 GTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGGTTCGCCGTT
1 GTAGCTTTAATCTGTTTAACTGCACCGCCAGGGAAGTAAGATTCGCTGTT
* * ** * *
33130431 GTGGCGTTAATCTGTTCCACTGCACCGCCAGGGAAATAAGATTCGTTGTT
1 GTAGCTTTAATCTGTTTAACTGCACCGCCAGGGAAGTAAGATTCGCTGTT
* ** * * * * * *
33130481 GTAGCTTTAGTCT-TTTCAACTGCAATGTCGGGGAAGCAAGATTCACCGAT
1 GTAGCTTTAATCTGTTT-AACTGCACCGCCAGGGAAGTAAGATTCGCTGTT
* * ** * *
33130531 GTGGCTTTAATCTATTCCACTGCACCGCCTGGGAAATAAGATTC
1 GTAGCTTTAATCTGTTTAACTGCACCGCCAGGGAAGTAAGATTC
33130575 TTCCTTCACC
Statistics
Matches: 432, Mismatches: 156, Indels: 10
0.72 0.26 0.02
Matches are distributed among these distances:
49 40 0.09
50 389 0.90
51 3 0.01
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (50 bp):
GTAGCTTTAATCTGTTTAACTGCACCGCCAGGGAAGTAAGATTCGCTGTT
Found at i:33130080 original size:100 final size:100
Alignment explanation
Indices: 33129901--33130574 Score: 936
Period size: 100 Copynumber: 6.8 Consensus size: 100
33129891 TTCTATCTGG
* * ** * * * * *
33129901 CTGCAGTGTCGGGGAAACAAGATTTGCCGTCGTAGCTTTAATCTGTTTCATTGCACGGCCAGGGA
1 CTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGA
* *
33129966 AGTAAGATTTGCTGTTGTGGCTTTAATCTTTTTAA
66 AGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAA
* *
33130001 CTACAATGTCGGGGAAGCAAGATTCACTGTTGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGA
1 CTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGA
33130066 AGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAA
66 AGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAA
* * * * * * * *
33130101 TTGTAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTATTCCACTACATCGCCTGGGG
1 CTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGA
* *
33130166 AGTAAGATTCACTATTGTAGCTTTAATCTTTTTAA
66 AGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAA
* ** * *
33130201 CTGCAATGTCGGGGAAGCAAGGTTCGTCGTTGTGGCCTTAATCTGTTCCACTGCACCGCTAGGGA
1 CTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGA
*
33130266 AATAAGATTCGCTGTTGTAGCTTTAATCTTTTTAA
66 AGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAA
* * ** *
33130301 CTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTACATTGCCTGGG-
1 CTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGA
33130365 AGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAA
66 AGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAA
* * *
33130400 CTGCAATGTCGGGGAAGCAAGGTTCGCCGTTGTGGCGTTAATCTGTTCCACTGCACCGCCAGGGA
1 CTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGA
* * * *
33130465 AATAAGATTCGTTGTTGTAGCTTTAGTCTTTTCAA
66 AGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAA
* * *
33130500 CTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTATTCCACTGCACCGCCTGGGA
1 CTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGA
*
33130565 AATAAGATTC
66 AGTAAGATTC
33130575 TTCCTTCACC
Statistics
Matches: 503, Mismatches: 70, Indels: 2
0.87 0.12 0.00
Matches are distributed among these distances:
99 90 0.18
100 413 0.82
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (100 bp):
CTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGA
AGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAA
Found at i:33138050 original size:79 final size:81
Alignment explanation
Indices: 33137939--33138128 Score: 219
Period size: 79 Copynumber: 2.4 Consensus size: 81
33137929 GCTACTCGTT
* * *
33137939 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
** *
33138002 GGATTTAGTAAC-TCGCA
64 GGAGATAGTAACTTAGCA
* **
33138019 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
33138083 AGATGGTCACTTAGCA
66 AGATAGTAACTTAGCA
33138099 CAAA-GCCTTCGGGACTTAGCCCGGACATTA
1 CAAATGCCTTCGGGACTTAGCCCGGA-ATTA
33138129 TTCAAATAAC
Statistics
Matches: 94, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 53 0.56
80 34 0.36
81 4 0.04
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
AGATAGTAACTTAGCA
Found at i:33138123 original size:40 final size:40
Alignment explanation
Indices: 33137920--33138123 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
33137910 CGGAATTTAA
** *
33137920 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
33137960 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
33138000 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
33138039 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * * *
33138079 CCGGAGATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
33138119 CCGGA
1 CCGGA
33138124 CATTATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:33146082 original size:79 final size:82
Alignment explanation
Indices: 33145971--33146155 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
33145961 GCTACTCGTT
* * *
33145971 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
33146034 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
33146051 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
33146114 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
33146131 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
33146156 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:33146155 original size:40 final size:40
Alignment explanation
Indices: 33145952--33146155 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
33145942 CGGAATTTAA
** *
33145952 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
33145992 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
33146032 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
33146071 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
33146111 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
33146151 CCGGA
1 CCGGA
33146156 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:33149515 original size:122 final size:123
Alignment explanation
Indices: 33149246--33149637 Score: 369
Period size: 122 Copynumber: 3.2 Consensus size: 123
33149236 AAGGCCAAGT
* * * * * * *
33149246 AGAAACTACTGTAGAAAAGGAGCGTCCACGTGGGAGATTTTCTCAGTAATTTTGCTGACAGTGCA
1 AGAAACTACTGTAGAAAAAGAGAGT-CATGTGGGAGCTTTT-TTAGTACTTTTGCTGACAATGCA
* * * * * * * *
33149311 TCCTCCTTGAAGCGTTTTTGACACTATTTTTTTAGAATCGTCTTCTCAAAATTATTTTTTC
64 TCCTACTTGAAACG-TTTTGACACTACTTTTTCAAAATCATCTTCTCAAAAGTATCTTTTC
* * **
33149372 AGGAACTACTATAGAAAAAGAGAGTCTATGTTCGAGCTTTTTTAGTACTTTTGCTGACAATGCAT
1 AGAAACTACTGTAGAAAAAGAGAGTC-ATGTGGGAGCTTTTTTAGTACTTTTGCTGACAATGCAT
* *
33149437 GCTACTTGAAACG-TTTGACATTACTTTTTCAAAATCATCTTCTC-AAAGTATCTTTTC
65 CCTACTTGAAACGTTTTGACACTACTTTTTCAAAATCATCTTCTCAAAAGTATCTTTTC
* * *
33149494 AGAAACTACTGTAGAAAAAGAGCA-TCATGTGGGAGCTTTTTTCAATACTTTTGCTGATAGTGCA
1 AGAAACTACTGTAGAAAAAGAG-AGTCATGTGGGAGCTTTTTT-AGTACTTTTGCTGACAATGCA
* ** * * * * * * *
33149558 TCCTTCTTGATGCGTTTTTGTCACTATTTTTTTAGAACCGTCTTCTCAAAATTAAT-TTTTC
64 TCCTACTTGAAACG-TTTTGACACTACTTTTTCAAAATCATCTTCTCAAAAGT-ATCTTTTC
*
33149619 AAAAACTACTGTAGAAAAA
1 AGAAACTACTGTAGAAAAA
33149638 AAACAAAATC
Statistics
Matches: 218, Mismatches: 41, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
121 14 0.06
122 61 0.28
123 27 0.12
124 24 0.11
125 59 0.27
126 33 0.15
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (123 bp):
AGAAACTACTGTAGAAAAAGAGAGTCATGTGGGAGCTTTTTTAGTACTTTTGCTGACAATGCATC
CTACTTGAAACGTTTTGACACTACTTTTTCAAAATCATCTTCTCAAAAGTATCTTTTC
Found at i:33149770 original size:33 final size:33
Alignment explanation
Indices: 33149731--33149827 Score: 115
Period size: 34 Copynumber: 2.9 Consensus size: 33
33149721 TTTTTAAATC
*
33149731 CTAAACCCTAATTTAATTAATTTTCTAAAAATA
1 CTAAACCCTAATTTAATTAATTTTCTAAAAACA
* * * * *
33149764 GTAAACCTTAATTTAATTAATTTACTTAAAACCC
1 CTAAACCCTAATTTAATTAATTTTC-TAAAAACA
*
33149798 CTAAAACCTAATTTAATTAATTTT-TAAAAA
1 CTAAACCCTAATTTAATTAATTTTCTAAAAA
33149828 AATTATAAAC
Statistics
Matches: 52, Mismatches: 11, Indels: 3
0.79 0.17 0.05
Matches are distributed among these distances:
32 5 0.10
33 22 0.42
34 25 0.48
ACGTcount: A:0.45, C:0.14, G:0.01, T:0.39
Consensus pattern (33 bp):
CTAAACCCTAATTTAATTAATTTTCTAAAAACA
Found at i:33149842 original size:34 final size:33
Alignment explanation
Indices: 33149732--33149842 Score: 104
Period size: 33 Copynumber: 3.3 Consensus size: 33
33149722 TTTTAAATCC
33149732 TAAACCCTAATTTAATTAATTTTCT--AAAAATA
1 TAAACCCTAATTTAATTAATTTT-TAAAAAAATA
* ***
33149764 GTAAACCTTAATTTAATTAATTTACTTAAAACCCCTA
1 -TAAACCCTAATTTAATTAATTT--TTAAAA-AAATA
33149801 -AAA-CCTAATTTAATTAATTTTTAAAAAAATTA
1 TAAACCCTAATTTAATTAATTTTTAAAAAAA-TA
33149833 TAAACCCTAA
1 TAAACCCTAA
33149843 ACAAATAAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 15
0.73 0.09 0.18
Matches are distributed among these distances:
32 8 0.13
33 24 0.39
34 22 0.35
35 4 0.06
36 2 0.03
37 2 0.03
ACGTcount: A:0.47, C:0.14, G:0.01, T:0.38
Consensus pattern (33 bp):
TAAACCCTAATTTAATTAATTTTTAAAAAAATA
Found at i:33151436 original size:22 final size:21
Alignment explanation
Indices: 33151408--33151454 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
33151398 CTTAGCTGGG
*
33151408 AGGGGTGCGTTAACTCTTTATT
1 AGGGGTGCGATAACTCTTTA-T
* *
33151430 AGGGGTGTGATACCTCTTTAT
1 AGGGGTGCGATAACTCTTTAT
33151451 AGGG
1 AGGG
33151455 TGCAATATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.19, C:0.13, G:0.32, T:0.36
Consensus pattern (21 bp):
AGGGGTGCGATAACTCTTTAT
Found at i:33168990 original size:18 final size:17
Alignment explanation
Indices: 33168957--33168995 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
33168947 TTGTATAAAT
33168957 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
33168975 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
33168992 TGTG
1 TGTG
33168996 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:33169248 original size:23 final size:23
Alignment explanation
Indices: 33169221--33169318 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
33169211 AGTGTTATTG
33169221 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
33169244 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
33169267 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
33169289 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
33169312 ATCAGTG
1 ATCAGTG
33169319 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:33169287 original size:45 final size:45
Alignment explanation
Indices: 33169223--33169311 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
33169213 TGTTATTGAT
* *
33169223 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
33169268 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
33169312 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:33176361 original size:18 final size:17
Alignment explanation
Indices: 33176328--33176366 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
33176318 TTGTATAAAT
33176328 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
33176346 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
33176363 TGTG
1 TGTG
33176367 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:33176619 original size:23 final size:23
Alignment explanation
Indices: 33176592--33176689 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
33176582 AGTGTTATTG
33176592 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
33176615 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
33176638 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
33176660 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
33176683 ATCAGTG
1 ATCAGTG
33176690 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:33176658 original size:45 final size:45
Alignment explanation
Indices: 33176594--33176682 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
33176584 TGTTATTGAT
* *
33176594 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
33176639 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
33176683 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:33192083 original size:6 final size:6
Alignment explanation
Indices: 33192072--33192127 Score: 53
Period size: 6 Copynumber: 8.8 Consensus size: 6
33192062 AGGCAACCCA
33192072 ATTTTT ATTTTT ATTTTT ATTTTT ACTTTATTT ATTCCTTT A-TTTT A-TTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT A--TT-TTT ATT--TTT ATTTTT ATTTTT
33192123 ATTTT
1 ATTTT
33192128 ACTTATTTGG
Statistics
Matches: 44, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
5 9 0.20
6 22 0.50
7 3 0.07
8 6 0.14
9 4 0.09
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.77
Consensus pattern (6 bp):
ATTTTT
Found at i:33192122 original size:27 final size:29
Alignment explanation
Indices: 33192081--33192134 Score: 76
Period size: 27 Copynumber: 1.9 Consensus size: 29
33192071 AATTTTTATT
*
33192081 TTTATTTTTATTTTTACTTTATTTATTCC
1 TTTATTTTTATTTTTACTTTACTTATTCC
*
33192110 TTTA-TTTTA-TTTTATTTTACTTATT
1 TTTATTTTTATTTTTACTTTACTTATT
33192135 TGGATATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 14 0.61
28 5 0.22
29 4 0.17
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (29 bp):
TTTATTTTTATTTTTACTTTACTTATTCC
Found at i:33193168 original size:18 final size:18
Alignment explanation
Indices: 33193145--33193179 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
33193135 CCTAAAGCAT
*
33193145 AAAAAAAAGAGAAAAAAG
1 AAAAAAAAAAGAAAAAAG
33193163 AAAAAAAAAAGAAAAAA
1 AAAAAAAAAAGAAAAAA
33193180 ATATTTTGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAAGAAAAAAG
Found at i:33195001 original size:22 final size:22
Alignment explanation
Indices: 33194973--33195015 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
33194963 TACACCAAAA
33194973 TAGGCTTTTAGCGGCGCTTTTT
1 TAGGCTTTTAGCGGCGCTTTTT
*
33194995 TAGGCTTTTAGCGGCGGTTTT
1 TAGGCTTTTAGCGGCGCTTTT
33195016 CACACAAACG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.09, C:0.16, G:0.30, T:0.44
Consensus pattern (22 bp):
TAGGCTTTTAGCGGCGCTTTTT
Found at i:33197362 original size:20 final size:19
Alignment explanation
Indices: 33197339--33197384 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
33197329 AATTCTATTT
*
33197339 AAAAAAATTAAAAATCTATA
1 AAAAAAATCAAAAA-CTATA
**
33197359 AAAAAAATCAATTACTATA
1 AAAAAAATCAAAAACTATA
33197378 AAAAAAA
1 AAAAAAA
33197385 AGATAAGTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 12 0.52
20 11 0.48
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAAAAATCAAAAACTATA
Found at i:33197487 original size:9 final size:9
Alignment explanation
Indices: 33197473--33197505 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
33197463 CAGCAATGGT
33197473 TGTAACCTC
1 TGTAACCTC
*
33197482 TGTAACCTA
1 TGTAACCTC
33197491 TGTAACCTC
1 TGTAACCTC
33197500 TGTAAC
1 TGTAAC
33197506 ATGTTTTACT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.33
Consensus pattern (9 bp):
TGTAACCTC
Found at i:33198669 original size:20 final size:22
Alignment explanation
Indices: 33198644--33198695 Score: 81
Period size: 20 Copynumber: 2.4 Consensus size: 22
33198634 ACTAGTTAAT
33198644 CTAAACCCTAAA-TTATAAA-C
1 CTAAACCCTAAAGTTATAAACC
33198664 CTAAACCCTAAAGTTATAAACC
1 CTAAACCCTAAAGTTATAAACC
33198686 CATAAACCCT
1 C-TAAACCCT
33198696 TAACACATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
20 12 0.41
21 7 0.24
22 2 0.07
23 8 0.28
ACGTcount: A:0.46, C:0.29, G:0.02, T:0.23
Consensus pattern (22 bp):
CTAAACCCTAAAGTTATAAACC
Found at i:33198792 original size:14 final size:14
Alignment explanation
Indices: 33198772--33198820 Score: 62
Period size: 14 Copynumber: 3.5 Consensus size: 14
33198762 AATGGTAACA
*
33198772 CCTAAACCTTAAAC
1 CCTAAACCATAAAC
* *
33198786 TCTAAACCATATAC
1 CCTAAACCATAAAC
*
33198800 CCTAAACCAAAAAC
1 CCTAAACCATAAAC
33198814 CCTAAAC
1 CCTAAAC
33198821 TATAGTGATA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.47, C:0.35, G:0.00, T:0.18
Consensus pattern (14 bp):
CCTAAACCATAAAC
Found at i:33199164 original size:41 final size:40
Alignment explanation
Indices: 33199089--33199237 Score: 181
Period size: 41 Copynumber: 3.6 Consensus size: 40
33199079 ATAAATTAAT
* * ** *
33199089 TAAATCCCAGAGCATTAGTGGCGCTTTTTTAAAAATGCCGC
1 TAAA-CCCAGAGCATTAGCGGCGCTTCTCCAAAAACGCCGC
* * *
33199130 TAAACCCAAAAGCATTAACGGCGTTTCTCCAAAAACGCCGC
1 TAAACCC-AGAGCATTAGCGGCGCTTCTCCAAAAACGCCGC
*
33199171 TAAAGCCCAGAGCATTAGTGGCGCTTCTCCAAAAACGCCGC
1 TAAA-CCCAGAGCATTAGCGGCGCTTCTCCAAAAACGCCGC
33199212 TAAAACCCAGAGCATTAGCGGCGCTT
1 T-AAACCCAGAGCATTAGCGGCGCTT
33199238 TTCTGTCTTT
Statistics
Matches: 92, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
40 3 0.03
41 83 0.90
42 6 0.07
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (40 bp):
TAAACCCAGAGCATTAGCGGCGCTTCTCCAAAAACGCCGC
Found at i:33199264 original size:61 final size:61
Alignment explanation
Indices: 33199185--33199300 Score: 196
Period size: 61 Copynumber: 1.9 Consensus size: 61
33199175 GCCCAGAGCA
* *
33199185 TTAGTGGCGCTTCTCCAAAAACGCCGCTAAAACCCAGAGCATTAGCGGCGCTTTTCTGTCT
1 TTAGCGGCGCTTCTCCAAAAACACCGCTAAAACCCAGAGCATTAGCGGCGCTTTTCTGTCT
* *
33199246 TTAGCGGCGCTTCTCCAAAAACACCGCTAAAGCCTAGAGCATTAGCGGCGCTTTT
1 TTAGCGGCGCTTCTCCAAAAACACCGCTAAAACCCAGAGCATTAGCGGCGCTTTT
33199301 TCAAAAACGC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 51 1.00
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (61 bp):
TTAGCGGCGCTTCTCCAAAAACACCGCTAAAACCCAGAGCATTAGCGGCGCTTTTCTGTCT
Found at i:33202125 original size:17 final size:16
Alignment explanation
Indices: 33202086--33202125 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
33202076 CTTTTCATAT
33202086 TTTTTATTTTTTAAAA
1 TTTTTATTTTTTAAAA
**
33202102 TAATTATTTGTTTAAAA
1 TTTTTATTT-TTTAAAA
33202119 TTTTTAT
1 TTTTTAT
33202126 GTTTCTTTAA
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (16 bp):
TTTTTATTTTTTAAAA
Found at i:33209956 original size:26 final size:26
Alignment explanation
Indices: 33209923--33209973 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
33209913 TTATCATATC
* *
33209923 TGGAAAGTCCGTCATGGACTATCTTT
1 TGGAAAGTCCGCCAAGGACTATCTTT
*
33209949 TGGAAAGTTCGCCAAGGACTATCTT
1 TGGAAAGTCCGCCAAGGACTATCTT
33209974 CTGGGACATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (26 bp):
TGGAAAGTCCGCCAAGGACTATCTTT
Found at i:33213859 original size:49 final size:49
Alignment explanation
Indices: 33213804--33213904 Score: 132
Period size: 49 Copynumber: 2.1 Consensus size: 49
33213794 CTCGTTTTCT
* * * *
33213804 CGATGCCATAGTCCAACTATGGTCTTACATGTAATCACATATCA-TATAC
1 CGATGCCATAGCCCAACTATGGTCCTACACGGAATCACATATCACT-TAC
* *
33213853 CGATGCCATAGCCCACCTATGGTCCTATACGGAATCACATATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCCTACACGGAATCACATATCACTTAC
33213902 CGA
1 CGA
33213905 AAGTACTCAT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
49 44 0.98
50 1 0.02
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (49 bp):
CGATGCCATAGCCCAACTATGGTCCTACACGGAATCACATATCACTTAC
Found at i:33216015 original size:8 final size:8
Alignment explanation
Indices: 33216002--33216026 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
33215992 TATACTAAAC
33216002 AATAAAAT
1 AATAAAAT
33216010 AATAAAAT
1 AATAAAAT
33216018 AATAAAAT
1 AATAAAAT
33216026 A
1 A
33216027 TTATTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:33218388 original size:37 final size:37
Alignment explanation
Indices: 33218338--33218416 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
33218328 TTATTACGAA
* *
33218338 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
33218375 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
33218412 GTCTT
1 GTCTT
33218417 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:33218613 original size:47 final size:47
Alignment explanation
Indices: 33218535--33218780 Score: 348
Period size: 47 Copynumber: 5.2 Consensus size: 47
33218525 CCCTTCGGGA
* * * * * * *
33218535 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33218582 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33218629 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
33218676 CTTATTACAAATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33218723 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33218770 ATTCATCACAT
1 CTT-ATCACAT
33218781 CGGCTATTAG
Statistics
Matches: 180, Mismatches: 18, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
47 174 0.97
48 6 0.03
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:33218772 original size:23 final size:23
Alignment explanation
Indices: 33218746--33218802 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
33218736 TACACTTTCA
33218746 CATTCATCACATCGGCTATTAGG
1 CATTCATCACATCGGCTATTAGG
33218769 CATTCATCACATCGGCTATTAGG
1 CATTCATCACATCGGCTATTAGG
*
33218792 CCTT-ATCACAT
1 CATTCATCACAT
33218803 ATATACACTT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 7 0.21
23 26 0.79
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.32
Consensus pattern (23 bp):
CATTCATCACATCGGCTATTAGG
Found at i:33218775 original size:70 final size:70
Alignment explanation
Indices: 33218699--33218848 Score: 275
Period size: 70 Copynumber: 2.2 Consensus size: 70
33218689 TACACTTTCA
33218699 CATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTA
1 CATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTA
33218764 TTAGG
66 TTAGG
*
33218769 CATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTA
1 CATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTA
33218834 TTAGG
66 TTAGG
*
33218839 CCTT-ATCACA
1 CATTCATCACA
33218849 CATATACACT
Statistics
Matches: 78, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
69 6 0.08
70 72 0.92
ACGTcount: A:0.29, C:0.29, G:0.11, T:0.32
Consensus pattern (70 bp):
CATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTA
TTAGG
Found at i:33218794 original size:117 final size:117
Alignment explanation
Indices: 33218652--33218896 Score: 431
Period size: 117 Copynumber: 2.1 Consensus size: 117
33218642 TACACTTTCA
*
33218652 CATTCATCACATCGGCCATTAGGCCTTATTACAAATATACACTTTCACATTCATCACATCGGCTA
1 CATTCATCACATCGGCCATTAGGCCTTATCACAAATATACACTTTCACATTCATCACATCGGCTA
33218717 TTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGG-CTATTAGG
66 TTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGTC-ATTAGG
* *
33218769 CATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTA
1 CATTCATCACATCGGCCATTAGGCCTTATCACAAATATACACTTTCACATTCATCACATCGGCTA
33218834 TTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGTCATTAGG
66 TTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGTCATTAGG
*
33218886 CCTT-ATCACAT
1 CATTCATCACAT
33218897 ATATACACTT
Statistics
Matches: 123, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
116 7 0.06
117 115 0.93
118 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.32
Consensus pattern (117 bp):
CATTCATCACATCGGCCATTAGGCCTTATCACAAATATACACTTTCACATTCATCACATCGGCTA
TTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGTCATTAGG
Found at i:33218803 original size:164 final size:164
Alignment explanation
Indices: 33218605--33218908 Score: 547
Period size: 164 Copynumber: 1.9 Consensus size: 164
33218595 TACACTTTCA
33218605 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
*
33218670 TTAGGCCTTATTACAAATATACACTTTCACATTCATCACATCGG-CTATTAGGCCTTATCACACA
66 TTAGGCCTTATCACAAATATACACTTTCACATTCATCACATCGGTC-ATTAGGCCTTATCACACA
33218734 TATACACTTTCACATTCATCACATCGGCTATTAGG
130 TATACACTTTCACATTCATCACATCGGCTATTAGG
* *
33218769 CATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
* *
33218834 TTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGTCATTAGGCCTTATCACATAT
66 TTAGGCCTTATCACAAATATACACTTTCACATTCATCACATCGGTCATTAGGCCTTATCACACAT
33218899 ATACACTTTC
131 ATACACTTTC
33218909 TTGGCTGAAT
Statistics
Matches: 134, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
164 133 0.99
165 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (164 bp):
CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
TTAGGCCTTATCACAAATATACACTTTCACATTCATCACATCGGTCATTAGGCCTTATCACACAT
ATACACTTTCACATTCATCACATCGGCTATTAGG
Found at i:33218822 original size:47 final size:47
Alignment explanation
Indices: 33218769--33218908 Score: 255
Period size: 47 Copynumber: 3.0 Consensus size: 47
33218759 GGCTATTAGG
33218769 CATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCA
1 CATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCA
*
33218816 CATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCA
1 CATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCA
33218863 CATTCATCACATCGG-TCATTAGGCCTTATCACATATATACACTTTC
1 CATTCATCACATCGGCT-ATTAGGCCTTATCACATATATACACTTTC
33218909 TTGGCTGAAT
Statistics
Matches: 90, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
46 1 0.01
47 89 0.99
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCA
Found at i:33222363 original size:40 final size:39
Alignment explanation
Indices: 33222313--33222482 Score: 162
Period size: 40 Copynumber: 4.3 Consensus size: 39
33222303 CTCTTCGGGT
*
33222313 TTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGC-CTTCGGAAC
* * *
33222353 TTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGC-CTTCGGAAC
* * * * * *
33222393 TTAGCCCGAATTTAGTAACTCGCACCAATGCCTTCGGATC
1 TTAGCCCGGATATA-TCACTAGCACGAATGCCTTCGGAAC
* * * *
33222433 TTAGTCCGGATATGGTCACTTAGCAC-AAAGCCTTCGGGAC
1 TTAGCCCGGATAT-ATCAC-TAGCACGAATGCCTTCGGAAC
33222473 TTAGCCCGGA
1 TTAGCCCGGA
33222483 CATCATTCGA
Statistics
Matches: 104, Mismatches: 23, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
40 87 0.84
41 17 0.16
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACGAATGCCTTCGGAAC
Found at i:33222442 original size:80 final size:81
Alignment explanation
Indices: 33222288--33222480 Score: 198
Period size: 80 Copynumber: 2.4 Consensus size: 81
33222278 CGAATACACG
* * * * * * *
33222288 TCACCAGCATGATTGCTCTTCGGG-TTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGAATATATAACTAGCACCAATGCTCTTCGGAA
33222352 CTTAGCCCGGATA-CA
66 CTTAGCCCGGATATCA
* *
33222367 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGAATTTAGTAACTCGCACCAATGC-CTTCGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGAATATA-TAACTAGCACCAATGCTCTTCGGA
* * **
33222431 TCTTAGTCCGGATATGG
65 ACTTAGCCCGGATATCA
* *
33222448 TCACTTAGCA-CAAAGC-CTTCGGGACTTAGCCCG
1 TCAC-TAGCATGAATGCTCTTCGGGACTTAGCCCG
33222481 GACATCATTC
Statistics
Matches: 95, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
79 22 0.23
80 47 0.49
81 21 0.22
82 5 0.05
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGAATATATAACTAGCACCAATGCTCTTCGGAA
CTTAGCCCGGATATCA
Found at i:33222829 original size:29 final size:29
Alignment explanation
Indices: 33222790--33222868 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
33222780 CTTAATAATC
*
33222790 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
33222820 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
33222849 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
33222869 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:33224825 original size:37 final size:37
Alignment explanation
Indices: 33224775--33224853 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
33224765 TTATTACGAA
* *
33224775 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
33224812 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
33224849 GTCTT
1 GTCTT
33224854 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:33225050 original size:47 final size:47
Alignment explanation
Indices: 33224972--33225322 Score: 549
Period size: 47 Copynumber: 7.5 Consensus size: 47
33224962 CCCTTCGGGA
* * * * * * *
33224972 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33225019 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33225066 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33225113 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33225160 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
33225207 CTTATCACACATATACACTTTCACATTCCTCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33225254 CTTATCACACATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33225301 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
33225323 TTGGCTGAAT
Statistics
Matches: 284, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 284 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:33227933 original size:12 final size:12
Alignment explanation
Indices: 33227918--33227946 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
33227908 AAAATCCTGG
33227918 TAAAATAAAAAC
1 TAAAATAAAAAC
33227930 TAAAATAAAAAC
1 TAAAATAAAAAC
33227942 TAAAA
1 TAAAA
33227947 CCGAAAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.76, C:0.07, G:0.00, T:0.17
Consensus pattern (12 bp):
TAAAATAAAAAC
Found at i:33229123 original size:17 final size:17
Alignment explanation
Indices: 33229082--33229124 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
33229072 GTCGGGTAAC
*
33229082 ATATCCAAGTGAACTCTA
1 ATAT-CAAGCGAACTCTA
33229100 ACT-TCAAGCGAACTCTA
1 A-TATCAAGCGAACTCTA
33229117 ATATCAAG
1 ATATCAAG
33229125 TGATTACTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
16 1 0.05
17 18 0.82
18 2 0.09
19 1 0.05
ACGTcount: A:0.40, C:0.23, G:0.12, T:0.26
Consensus pattern (17 bp):
ATATCAAGCGAACTCTA
Found at i:33229821 original size:6 final size:6
Alignment explanation
Indices: 33229812--33229922 Score: 222
Period size: 6 Copynumber: 18.5 Consensus size: 6
33229802 ATGCACATGC
33229812 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
33229860 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
33229908 ATATGT ATATGT ATA
1 ATATGT ATATGT ATA
33229923 GAAGTATACT
Statistics
Matches: 105, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 105 1.00
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (6 bp):
ATATGT
Found at i:33248613 original size:47 final size:47
Alignment explanation
Indices: 33248355--33249038 Score: 1019
Period size: 47 Copynumber: 14.1 Consensus size: 47
33248345 GAAATGATAG
*
33248355 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
33248404 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TATATATGTGA
*
33248455 TAACGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
33248504 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TATATATGTGA
*
33248555 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
33248602 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
33248649 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TATATATGTGA
33248700 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
33248749 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
33248796 TAAGGACTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
33248843 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA--G--TGTATATATGTGA
33248894 T-AGGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGG-CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
33248941 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
33248988 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
33249035 TAAG
1 TAAG
33249039 TCCCGAAGGG
Statistics
Matches: 598, Mismatches: 23, Indels: 30
0.92 0.04 0.05
Matches are distributed among these distances:
47 274 0.46
48 3 0.01
49 134 0.22
50 3 0.01
51 184 0.31
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:33248687 original size:145 final size:143
Alignment explanation
Indices: 33248355--33249038 Score: 1045
Period size: 145 Copynumber: 4.7 Consensus size: 143
33248345 GAAATGATAG
*
33248355 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
33248420 ATGTGATGAATGTGAAAGTGTATATATATATGTGATAACGCCTAATGGCCGATGTGATGAATGTG
66 ATGTGATGAATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
33248485 AAAGTGTATATATATGTGA
127 AAAGTG--TATATATGTGA
33248504 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGC
*
33248569 CGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
64 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
33248634 AGTGTATATATGAGA
129 AGTGTATATATGTGA
33248649 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGC
33248714 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
64 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
33248779 AAAGTGTATATACGTGA
127 AAAGTGTATATATGTGA
* *
33248796 TAAGGACTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGAGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
33248859 ATGTGATGAATGTGAAAGTGTATGTATATATGTGAT-AGGACCTAATGGCCGATGTGATGAATGT
66 ATGTGATGAATGTGAAA--G--TGTATATATGTGATAAGG-CCTAATGGCCGATGTGATGAATGT
33248923 GAAAGTGTATATATGTGA
126 GAAAGTGTATATATGTGA
* * * * *
33248941 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* * *
33249004 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
33249039 TCCCGAAGGG
Statistics
Matches: 505, Mismatches: 20, Indels: 27
0.91 0.04 0.05
Matches are distributed among these distances:
141 13 0.03
142 2 0.00
143 44 0.09
144 3 0.01
145 222 0.44
147 137 0.27
149 35 0.07
151 49 0.10
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (143 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGA
Found at i:33248691 original size:194 final size:192
Alignment explanation
Indices: 33248355--33249038 Score: 1095
Period size: 194 Copynumber: 3.5 Consensus size: 192
33248345 GAAATGATAG
* *
33248355 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGATAAGGCCTAATGGCCG
* *
33248420 ATGTGATGAATGTGAAAGTGTATATATATATGTGATAACGCCTAATGGCCGATGTGATGAATGTG
64 ATGTGATGAATGTGAAAGTG----TATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTG
33248485 AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATA
125 AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATA
33248550 TGTGA
188 TGTGA
33248555 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
33248620 GTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
33248685 TATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
131 --TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
33248749 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGACTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
33248814 GTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
33248879 TATGTATATATGTGAT-AGGACCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
131 TA--TATATATGTGATAAGG-CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * *
33248941 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
* * *
33249006 GTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 GTGATGAATGTGAAAGTGTATATATGAGATAAG
33249039 TCCCGAAGGG
Statistics
Matches: 463, Mismatches: 16, Indels: 18
0.93 0.03 0.04
Matches are distributed among these distances:
192 100 0.22
193 3 0.01
194 230 0.50
196 49 0.11
198 46 0.10
200 35 0.08
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (192 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:33249213 original size:37 final size:37
Alignment explanation
Indices: 33249157--33249235 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
33249147 CCGAGCTCTA
* * *
33249157 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
33249194 AAGACCCGATAACTTCGTGTGGAGCTTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
33249231 AAGAC
1 AAGAC
33249236 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:33251178 original size:29 final size:29
Alignment explanation
Indices: 33251143--33251216 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
33251133 GTTGTGAGAT
* *
33251143 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
33251172 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
33251201 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
33251217 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:33251610 original size:40 final size:39
Alignment explanation
Indices: 33251526--33251669 Score: 139
Period size: 39 Copynumber: 3.6 Consensus size: 39
33251516 TCGAATGATG
* * * *
33251526 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTGGTGCGAGA-T-ACTAAA
* * *
33251566 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTGGTGCGAGATACTAAA
* *
33251606 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTGGTGCGAGATACTAAA
33251645 TCCGGGCTAAGTCTCGAAGAGCATT
1 TCCGGGCTAAGTC-CGAAG-GCATT
33251670 CATGCTAGTG
Statistics
Matches: 88, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
39 36 0.41
40 36 0.41
41 15 0.17
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTGGTGCGAGATACTAAA
Found at i:33251627 original size:39 final size:40
Alignment explanation
Indices: 33251526--33251669 Score: 145
Period size: 40 Copynumber: 3.6 Consensus size: 40
33251516 TCGAATGATG
* *
33251526 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
33251565 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
33251606 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
33251645 TCCGGGCTAAGTCTCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAG-GCATT
33251670 CATGCTAGTG
Statistics
Matches: 89, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
39 35 0.39
40 36 0.40
41 17 0.19
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:33251688 original size:40 final size:40
Alignment explanation
Indices: 33251644--33251760 Score: 155
Period size: 40 Copynumber: 2.9 Consensus size: 40
33251634 GAGTTACTAA
* *
33251644 ATCCGGGCTAAGTCTCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCTCGAAGAGCATTCATGCTGGTGATAT
* *
33251684 ATCCGGGCTAAGT-TCTGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCTC-GAAGAGCATTCATGCTGGTGATAT
* * *
33251724 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCTCGAAGAGCATTCATGCTGGTGA
33251761 CGTGTATTCG
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
39 2 0.03
40 63 0.95
41 1 0.02
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCTCGAAGAGCATTCATGCTGGTGATAT
Found at i:33255327 original size:51 final size:49
Alignment explanation
Indices: 33255215--33255851 Score: 992
Period size: 47 Copynumber: 13.1 Consensus size: 49
33255205 GAAATGATAG
*
33255215 TAAGGCCTAATGGCCGATGTGATGGATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
33255264 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGA
33255315 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
33255364 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGA
*
33255415 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
33255462 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
33255509 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGA
*
33255560 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
33255609 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
33255656 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA--TATATATGTGA
*
33255707 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
33255754 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * *
33255801 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
33255848 TAAG
1 TAAG
33255852 TCCCGAAGGG
Statistics
Matches: 552, Mismatches: 22, Indels: 30
0.91 0.04 0.05
Matches are distributed among these distances:
47 228 0.41
48 1 0.00
49 134 0.24
51 189 0.34
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:33255499 original size:147 final size:146
Alignment explanation
Indices: 33255215--33255840 Score: 1035
Period size: 147 Copynumber: 4.3 Consensus size: 146
33255205 GAAATGATAG
*
33255215 TAAGGCCTAATGGCCGATGTGATGGATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGC
33255278 CGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
66 CGATGTGATGAATGTGAAAGTG---ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
33255343 TGAAAGTGTATATATATGTGA
128 TGAAAGTG--TATATATGAGA
33255364 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGC
*
33255429 CGATGTGATGAATGTGAAAGTG-TATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
66 CGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
33255493 AAGTGTATATATGAGA
131 AAGTGTATATATGAGA
33255509 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGC
*
33255574 CGATGTGATGAATGTGAAAGTGTATATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTG
66 CGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
33255639 AAAGTGTATATATGAGA
130 AAAGTGTATATATGAGA
* *
33255656 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGATAGGGCCTAATGGC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGC
*
33255721 CGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGA
66 CGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
33255785 AAGTGTATATATGTGA
131 AAGTGTATATATGAGA
* * * * * * *
33255801 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
33255841 AATGTGATAA
Statistics
Matches: 455, Mismatches: 18, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
145 184 0.40
147 187 0.41
149 35 0.08
151 49 0.11
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (146 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGC
CGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
AAGTGTATATATGAGA
Found at i:33255647 original size:245 final size:243
Alignment explanation
Indices: 33255215--33255851 Score: 1020
Period size: 245 Copynumber: 2.6 Consensus size: 243
33255205 GAAATGATAG
*
33255215 TAAGGCCTAATGGCCGATGTGATGGATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
33255280 ATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
64 ATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
33255345 AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATA
129 AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TATATA
*
33255410 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-G-TGTATATACGTGA
190 TGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGATGTATATACGTGA
*
33255462 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
33255527 GTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66 GTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
33255592 AGTGTATATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGAT
131 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGAT
*
33255657 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGA
196 AAGGCCTAATGGCCGATGTGATGAATGTGAAAG-G-ATGTATATACGTGA
* *
33255707 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * * * * * *
33255772 GTGATGAATGTGAAAGTG----TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
66 GTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
33255833 AGTGTATA-A-ATGTGATAAG
131 AGTGTATATATATGTGATAAG
33255852 TCCCGAAGGG
Statistics
Matches: 370, Mismatches: 16, Indels: 16
0.92 0.04 0.04
Matches are distributed among these distances:
239 9 0.02
240 1 0.00
241 87 0.24
243 1 0.00
245 237 0.64
247 35 0.09
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (243 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGAT
AAGGCCTAATGGCCGATGTGATGAATGTGAAAGGATGTATATACGTGA
Found at i:33256026 original size:37 final size:37
Alignment explanation
Indices: 33255970--33256048 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
33255960 CCGAGCTCTA
* * *
33255970 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
33256007 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
33256044 AAGAC
1 AAGAC
33256049 TTCGTAATAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:33259719 original size:6 final size:6
Alignment explanation
Indices: 33259708--33259772 Score: 66
Period size: 6 Copynumber: 11.2 Consensus size: 6
33259698 GGTTTTCTCC
*
33259708 AAAATG AAAATG -AAA-- AAAAT- AAAAAG AAAATG AAAATG AAAATG
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG
*
33259752 AAAAAAG AAAAATG AAAATG A
1 -AAAATG -AAAATG AAAATG A
33259773 CCTGAAAAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
4 3 0.06
5 7 0.14
6 30 0.59
7 11 0.22
ACGTcount: A:0.74, C:0.00, G:0.14, T:0.12
Consensus pattern (6 bp):
AAAATG
Found at i:33259737 original size:26 final size:26
Alignment explanation
Indices: 33259708--33259772 Score: 96
Period size: 26 Copynumber: 2.5 Consensus size: 26
33259698 GGTTTTCTCC
33259708 AAAATGAAAATGAAAAAAATAAAAAG-
1 AAAATGAAAATGAAAAAAA-AAAAAGA
**
33259734 AAAATGAAAATGAAAATGAAAAAAGA
1 AAAATGAAAATGAAAAAAAAAAAAGA
33259760 AAAATGAAAATGA
1 AAAATGAAAATGA
33259773 CCTGAAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
25 6 0.17
26 30 0.83
ACGTcount: A:0.74, C:0.00, G:0.14, T:0.12
Consensus pattern (26 bp):
AAAATGAAAATGAAAAAAAAAAAAGA
Found at i:33259782 original size:32 final size:32
Alignment explanation
Indices: 33259708--33259772 Score: 105
Period size: 32 Copynumber: 2.0 Consensus size: 32
33259698 GGTTTTCTCC
33259708 AAAATGAAAATGAAAAAAATAAAAAGAAAATG
1 AAAATGAAAATGAAAAAAATAAAAAGAAAATG
*
33259740 AAAATGAAAATGAAAAAAGA-AAAATGAAAATG
1 AAAATGAAAATGAAAAAA-ATAAAAAGAAAATG
33259772 A
1 A
33259773 CCTGAAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 30 0.97
33 1 0.03
ACGTcount: A:0.74, C:0.00, G:0.14, T:0.12
Consensus pattern (32 bp):
AAAATGAAAATGAAAAAAATAAAAAGAAAATG
Found at i:33260211 original size:30 final size:30
Alignment explanation
Indices: 33260175--33260237 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
33260165 TGTTTTTCTA
33260175 GTTGAAATAAACTTCTATAATTCAAAAAAG
1 GTTGAAATAAACTTCTATAATTCAAAAAAG
*
33260205 GTTGAAATAAACTTTTATAATTCAAAAAAG
1 GTTGAAATAAACTTCTATAATTCAAAAAAG
33260235 GTT
1 GTT
33260238 CTATCTTCTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.48, C:0.08, G:0.11, T:0.33
Consensus pattern (30 bp):
GTTGAAATAAACTTCTATAATTCAAAAAAG
Found at i:33282019 original size:71 final size:78
Alignment explanation
Indices: 33281921--33282093 Score: 227
Period size: 71 Copynumber: 2.3 Consensus size: 78
33281911 TGACCATATC
*
33281921 CGGACTAAGATCCGAAGGCATTGGTGCGAGTTAC-TAA-CGG-GTAAG-TCCG-AGGCA-TTGTG
1 CGGACTAAGATCCGAAGGCATTGGTGCGAGTTACATAACCGGACTAAGATCCGAAGGCATTTGTG
33281980 CGAGTTACTATAA
66 CGAGTTACTATAA
*
33281993 CGGACTAAGAT-CGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGATCCGAAGGCATTTGT
1 CGGACTAAGATCCGAAGGCATTGGTGCGAGTTAC-ATAACCGGACTAAGATCCGAAGGCATTTGT
33282057 GCGAGTTACTATAA
65 GCGAGTTACTATAA
* *
33282071 CCGGGCTATG-TCCCGAAGGCATT
1 -CGGACTAAGAT-CCGAAGGCATT
33282094 TGAACGAGTA
Statistics
Matches: 87, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
71 21 0.24
72 11 0.13
73 3 0.03
74 3 0.03
75 4 0.05
76 4 0.05
77 5 0.06
78 19 0.22
79 7 0.08
80 10 0.11
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (78 bp):
CGGACTAAGATCCGAAGGCATTGGTGCGAGTTACATAACCGGACTAAGATCCGAAGGCATTTGTG
CGAGTTACTATAA
Found at i:33282109 original size:40 final size:40
Alignment explanation
Indices: 33281920--33282095 Score: 237
Period size: 40 Copynumber: 4.6 Consensus size: 40
33281910 GTGACCATAT
*
33281920 CCGGACTAAGATCCGAAGGCATTGGTGCGAGTTAC--TAA
1 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATAA
*
33281958 -CGG-GTAAG-TCCG-AGGCA-TTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATAA
33281993 -CGGACTAAGAT-CGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATAA
33282031 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATAA
* *
33282071 CCGGGCTATG-TCCCGAAGGCATTTG
1 CCGGACTAAGAT-CCGAAGGCATTTG
33282096 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 5, Indels: 16
0.86 0.03 0.11
Matches are distributed among these distances:
33 12 0.10
34 5 0.04
35 10 0.08
36 10 0.08
37 9 0.07
38 18 0.15
39 12 0.10
40 48 0.39
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:33294550 original size:15 final size:16
Alignment explanation
Indices: 33294519--33294552 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
33294509 CAACTAACCC
33294519 TAAAAAAAATAAAAAT
1 TAAAAAAAATAAAAAT
*
33294535 TAAATAAAAT-AAAAT
1 TAAAAAAAATAAAAAT
33294550 TAA
1 TAA
33294553 GTTGAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (16 bp):
TAAAAAAAATAAAAAT
Found at i:33294984 original size:19 final size:17
Alignment explanation
Indices: 33294962--33294999 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 17
33294952 TATGACCCCT
33294962 ATTTTAAATTGATTTTTAA
1 ATTTTAAATT-A-TTTTAA
33294981 ATTTTAAATTATTTTAA
1 ATTTTAAATTATTTTAA
33294998 AT
1 AT
33295000 ACATTTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.42
18 1 0.05
19 10 0.53
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (17 bp):
ATTTTAAATTATTTTAA
Found at i:33299171 original size:27 final size:27
Alignment explanation
Indices: 33298992--33299160 Score: 209
Period size: 27 Copynumber: 6.3 Consensus size: 27
33298982 GTAATGGGCC
33298992 TAAAATGATCGAAATACCCTCGAAGGG
1 TAAAATGATCGAAATACCCTCGAAGGG
*
33299019 TAGAATGATCGAAATACCC-CGAAGGG
1 TAAAATGATCGAAATACCCTCGAAGGG
* *
33299045 TAAAATGAT-GGAATACCCTCAAAGGG
1 TAAAATGATCGAAATACCCTCGAAGGG
* *
33299071 TAAAATGA-CTAAAATACCCTCGAAGAG
1 TAAAATGATC-GAAATACCCTCGAAGGG
* * *
33299098 TAAAATGATCAAAATACCCTCGAAAGA
1 TAAAATGATCGAAATACCCTCGAAGGG
* * *
33299125 TTAAATGACCGAAATACCCCCGAAGGG
1 TAAAATGATCGAAATACCCTCGAAGGG
33299152 TAAAATGAT
1 TAAAATGAT
33299161 TGTTATACCC
Statistics
Matches: 119, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
25 8 0.07
26 29 0.24
27 81 0.68
28 1 0.01
ACGTcount: A:0.44, C:0.18, G:0.20, T:0.18
Consensus pattern (27 bp):
TAAAATGATCGAAATACCCTCGAAGGG
Found at i:33321595 original size:19 final size:17
Alignment explanation
Indices: 33321573--33321610 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 17
33321563 TATGACCCCT
33321573 ATTTTAAATTGATTTTTAA
1 ATTTTAAATT-A-TTTTAA
33321592 ATTTTAAATTATTTTAA
1 ATTTTAAATTATTTTAA
33321609 AT
1 AT
33321611 ACATTTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.42
18 1 0.05
19 10 0.53
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (17 bp):
ATTTTAAATTATTTTAA
Found at i:33321849 original size:18 final size:18
Alignment explanation
Indices: 33321814--33321849 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
33321804 TGTTCACACT
*
33321814 TTTTTCATTTTTCCTTTA
1 TTTTTCATTTTTACTTTA
*
33321832 TTTTTCATTTTTATTTTA
1 TTTTTCATTTTTACTTTA
33321850 AAAGTTATGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTTTCATTTTTACTTTA
Found at i:33325635 original size:27 final size:27
Alignment explanation
Indices: 33325594--33325762 Score: 218
Period size: 27 Copynumber: 6.3 Consensus size: 27
33325584 GTAATGGGCC
33325594 TAAAATGATCGAAATACCCTCGAAGGG
1 TAAAATGATCGAAATACCCTCGAAGGG
*
33325621 TAGAATGATCGAAATACCC-CGAAGGG
1 TAAAATGATCGAAATACCCTCGAAGGG
* *
33325647 TAAAATGATGGAAATACCCTCAAAGGG
1 TAAAATGATCGAAATACCCTCGAAGGG
* *
33325674 TAAAATGA-CTAAAATACCCTCGAAGAG
1 TAAAATGATC-GAAATACCCTCGAAGGG
* * *
33325701 TAAAATGATCAAAATACCCTCGAAAGA
1 TAAAATGATCGAAATACCCTCGAAGGG
* *
33325728 TTAAATGACCGAAATACCC-CGAAGGG
1 TAAAATGATCGAAATACCCTCGAAGGG
33325754 TAAAATGAT
1 TAAAATGAT
33325763 TGTTATACCC
Statistics
Matches: 121, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
26 36 0.30
27 84 0.69
28 1 0.01
ACGTcount: A:0.44, C:0.18, G:0.20, T:0.18
Consensus pattern (27 bp):
TAAAATGATCGAAATACCCTCGAAGGG
Found at i:33325674 original size:53 final size:51
Alignment explanation
Indices: 33325594--33325762 Score: 212
Period size: 53 Copynumber: 3.2 Consensus size: 51
33325584 GTAATGGGCC
*
33325594 TAAAATGATCGAAATACCCTCGAAGGGTAGAATGATCGAAATACCCCGAAGGG
1 TAAAATGATCGAAATACCCTCAAAGGGTA-AATGA-CGAAATACCCCGAAGGG
* * *
33325647 TAAAATGATGGAAATACCCTCAAAGGGTAAAATGACTAAAATACCCTCGAAGAG
1 TAAAATGATCGAAATACCCTCAAAGGGT-AAATGAC-GAAATACCC-CGAAGGG
* **
33325701 TAAAATGATCAAAATACCCTCGAAAGATTAAATGACCGAAATACCCCGAAGGG
1 TAAAATGATCGAAATACCCTC-AAAGGGTAAATGA-CGAAATACCCCGAAGGG
33325754 TAAAATGAT
1 TAAAATGAT
33325763 TGTTATACCC
Statistics
Matches: 101, Mismatches: 10, Indels: 10
0.83 0.08 0.08
Matches are distributed among these distances:
52 1 0.01
53 54 0.53
54 40 0.40
55 6 0.06
ACGTcount: A:0.44, C:0.18, G:0.20, T:0.18
Consensus pattern (51 bp):
TAAAATGATCGAAATACCCTCAAAGGGTAAATGACGAAATACCCCGAAGGG
Found at i:33325753 original size:80 final size:80
Alignment explanation
Indices: 33325605--33325761 Score: 217
Period size: 80 Copynumber: 2.0 Consensus size: 80
33325595 AAAATGATCG
* * * * * **
33325605 AAATACCCTCGAAGGGTAGAATGATCGAAATACCCCGAAGGGTAAAATGATGGAAATACCCTCAA
1 AAATACCCTCGAAGAGTAAAATGATCAAAATACCCCGAAAGATAAAATGACCGAAATACCCTCAA
33325670 AGGGTAAAATGACTA
66 AGGGTAAAATGACTA
* *
33325685 AAATACCCTCGAAGAGTAAAATGATCAAAATACCCTCGAAAGATTAAATGACCGAAATACCC-CG
1 AAATACCCTCGAAGAGTAAAATGATCAAAATACCC-CGAAAGATAAAATGACCGAAATACCCTCA
33325749 AAGGGTAAAATGA
65 AAGGGTAAAATGA
33325762 TTGTTATACC
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
80 46 0.69
81 21 0.31
ACGTcount: A:0.45, C:0.18, G:0.20, T:0.17
Consensus pattern (80 bp):
AAATACCCTCGAAGAGTAAAATGATCAAAATACCCCGAAAGATAAAATGACCGAAATACCCTCAA
AGGGTAAAATGACTA
Found at i:33331553 original size:21 final size:21
Alignment explanation
Indices: 33331510--33331566 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
33331500 TAAGAATATG
* * **
33331510 AAAATATATAAAATTATTGTA
1 AAAATAAATAATATTATCATA
33331531 AAAATAAATAATATTATCATA
1 AAAATAAATAATATTATCATA
* *
33331552 AATATAAATATTATT
1 AAAATAAATAATATT
33331567 TAATTATCAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (21 bp):
AAAATAAATAATATTATCATA
Found at i:33331573 original size:26 final size:26
Alignment explanation
Indices: 33331543--33331594 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
33331533 AATAAATAAT
*
33331543 ATTATCATAAATATAAATATTATTTA
1 ATTATCATAAAGATAAATATTATTTA
* *
33331569 ATTATCATTAAGATAAATATTTTTTA
1 ATTATCATAAAGATAAATATTATTTA
33331595 TGTCAATATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (26 bp):
ATTATCATAAAGATAAATATTATTTA
Found at i:33334475 original size:33 final size:33
Alignment explanation
Indices: 33334417--33334479 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
33334407 CCAAAATAAA
*
33334417 TAAAAATTAAACTCAATACCCAAATACAATCGG
1 TAAAAATTAAACTCAATACCAAAATACAATCGG
*
33334450 TAAAAATTAAAACTCAAT-TCAAAATACAAT
1 TAAAAATT-AAACTCAATACCAAAATACAAT
33334480 TTAATAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
33 18 0.67
34 9 0.33
ACGTcount: A:0.56, C:0.17, G:0.03, T:0.24
Consensus pattern (33 bp):
TAAAAATTAAACTCAATACCAAAATACAATCGG
Found at i:33334488 original size:34 final size:33
Alignment explanation
Indices: 33334415--33334490 Score: 82
Period size: 33 Copynumber: 2.3 Consensus size: 33
33334405 GTCCAAAATA
*
33334415 AATAAAAATTAAACTCAATACCCAAATACAATC
1 AATAAAAATTAAACTCAATACCAAAATACAATC
** * *
33334448 GGTAAAAATTAAAACTCAAT-TCAAAATACAATTT
1 AATAAAAATT-AAACTCAATACCAAAATACAA-TC
33334482 AATAAAAAT
1 AATAAAAAT
33334491 AGTATATTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
33 17 0.50
34 17 0.50
ACGTcount: A:0.58, C:0.14, G:0.03, T:0.25
Consensus pattern (33 bp):
AATAAAAATTAAACTCAATACCAAAATACAATC
Found at i:33334618 original size:16 final size:17
Alignment explanation
Indices: 33334588--33334620 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
33334578 TTTTTATAAT
33334588 TTATAATATAGTAATAG
1 TTATAATATAGTAATAG
*
33334605 TTAT-ATATATTAATAG
1 TTATAATATAGTAATAG
33334621 ATTTAGTCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.45
Consensus pattern (17 bp):
TTATAATATAGTAATAG
Found at i:33334918 original size:12 final size:12
Alignment explanation
Indices: 33334903--33334944 Score: 57
Period size: 12 Copynumber: 3.3 Consensus size: 12
33334893 TAATCTATAA
33334903 TATAATAATAGT
1 TATAATAATAGT
33334915 TATATATTAATAGT
1 TATA-A-TAATAGT
*
33334929 TATAGTAATAGT
1 TATAATAATAGT
33334941 TATA
1 TATA
33334945 TACTATGAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
12 15 0.56
13 1 0.04
14 11 0.41
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (12 bp):
TATAATAATAGT
Found at i:33334925 original size:14 final size:14
Alignment explanation
Indices: 33334902--33334946 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
33334892 CTAATCTATA
33334902 ATATAATAATAGTT
1 ATATAATAATAGTT
*
33334916 ATATATTAATAG-T
1 ATATAATAATAGTT
*
33334929 -TATAGTAATAGTT
1 ATATAATAATAGTT
33334942 ATATA
1 ATATA
33334947 CTATGAAGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 10 0.37
13 2 0.07
14 15 0.56
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (14 bp):
ATATAATAATAGTT
Found at i:33336344 original size:20 final size:20
Alignment explanation
Indices: 33336321--33336383 Score: 58
Period size: 20 Copynumber: 3.1 Consensus size: 20
33336311 AAAGTCTAAT
33336321 AAATTATAAAAAAAATTATA
1 AAATTATAAAAAAAATTATA
* *
33336341 AAATTAATAAAACATATT-TA
1 AAATT-ATAAAAAAAATTATA
* *
33336361 AAATT-TTATAAAAATTCATA
1 AAATTATAAAAAAAATT-ATA
33336381 AAA
1 AAA
33336384 CTCATAAATA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 7 0.21
20 17 0.50
21 10 0.29
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (20 bp):
AAATTATAAAAAAAATTATA
Found at i:33336371 original size:21 final size:21
Alignment explanation
Indices: 33336324--33336374 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
33336314 GTCTAATAAA
33336324 TTATAAAAAAAATTATAAAAT
1 TTATAAAAAAAATTATAAAAT
* * *
33336345 TAATAAAACATATT-TAAAATT
1 TTATAAAAAAAATTATAAAA-T
33336366 TTATAAAAA
1 TTATAAAAA
33336375 TTCATAAAAC
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
20 5 0.21
21 19 0.79
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
TTATAAAAAAAATTATAAAAT
Found at i:33336412 original size:40 final size:39
Alignment explanation
Indices: 33336321--33336412 Score: 89
Period size: 40 Copynumber: 2.3 Consensus size: 39
33336311 AAAGTCTAAT
* * *
33336321 AAATTATAAAAAAAATTATAAAATTAATAAAACATATTTA
1 AAATT-TAATAAAAATTATAAAACTAATAAAACATATTAA
* *
33336361 AAATTTTATAAAAATTCATAAAACTCATAAATA-ATA-TAA
1 AAATTTAATAAAAATT-ATAAAACTAATAAA-ACATATTAA
33336400 AAATTCTAATAAA
1 AAATT-TAATAAA
33336413 TTATATATAA
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
39 16 0.37
40 26 0.60
41 1 0.02
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (39 bp):
AAATTTAATAAAAATTATAAAACTAATAAAACATATTAA
Found at i:33336422 original size:28 final size:27
Alignment explanation
Indices: 33336367--33336432 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 27
33336357 TTTAAAATTT
*
33336367 TATAAAAATTCATAAAACTCATAAATAA
1 TATAAAAATTC-TAAAAATCATAAATAA
* *
33336395 TATAAAAATTCTAATAAATTATATATAA
1 TATAAAAATTCTAA-AAATCATAAATAA
33336423 -A-AAAAATTCT
1 TATAAAAATTCT
33336433 TCTTCTCTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
26 9 0.26
27 4 0.12
28 21 0.62
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (27 bp):
TATAAAAATTCTAAAAATCATAAATAA
Found at i:33340074 original size:20 final size:20
Alignment explanation
Indices: 33340000--33340100 Score: 87
Period size: 20 Copynumber: 5.0 Consensus size: 20
33339990 TGTACATTCC
* *
33340000 TTAAAGTATCAATACTTTTC
1 TTAAAGTATCGATACTTTTA
* * *
33340020 TCAAAGTATCGATGCTTTTC
1 TTAAAGTATCGATACTTTTA
* *
33340040 TCAAAGTTTTC-ATACTTTTA
1 TTAAAG-TATCGATACTTTTA
* *
33340060 TTAAAGTATTGATACCTTTA
1 TTAAAGTATCGATACTTTTA
* *
33340080 TTATAGTATCGATACCTTTA
1 TTAAAGTATCGATACTTTTA
33340100 T
1 T
33340101 CCTGGTATCG
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
19 2 0.03
20 62 0.93
21 3 0.04
ACGTcount: A:0.31, C:0.15, G:0.09, T:0.46
Consensus pattern (20 bp):
TTAAAGTATCGATACTTTTA
Found at i:33340108 original size:20 final size:20
Alignment explanation
Indices: 33340064--33340115 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
33340054 CTTTTATTAA
* *
33340064 AGTATTGATACCTTTATTAT
1 AGTATCGATACCTTTATCAT
*
33340084 AGTATCGATACCTTTATCCT
1 AGTATCGATACCTTTATCAT
*
33340104 GGTATCGATACC
1 AGTATCGATACC
33340116 ATTTTACGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.27, C:0.19, G:0.13, T:0.40
Consensus pattern (20 bp):
AGTATCGATACCTTTATCAT
Found at i:33343074 original size:45 final size:45
Alignment explanation
Indices: 33343025--33343130 Score: 149
Period size: 45 Copynumber: 2.4 Consensus size: 45
33343015 GCTATATGCC
*
33343025 AGAAATGAGTAAGACCATAACTAAAAGATTCTATGACATCATGAT
1 AGAAATGAGTAAGACCATAACTAAAAGATGCTATGACATCATGAT
** * *
33343070 AGAAATGAGTAAGATAATAACTGAAAGATGCTATGACATCATTAT
1 AGAAATGAGTAAGACCATAACTAAAAGATGCTATGACATCATGAT
* *
33343115 GGAAATAAGTAAGACC
1 AGAAATGAGTAAGACC
33343131 CTGGTTGAAA
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 52 1.00
ACGTcount: A:0.47, C:0.11, G:0.18, T:0.24
Consensus pattern (45 bp):
AGAAATGAGTAAGACCATAACTAAAAGATGCTATGACATCATGAT
Found at i:33343401 original size:27 final size:27
Alignment explanation
Indices: 33343341--33343402 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
33343331 AATAAAATAT
* * * *
33343341 TAAACACGGGATAGTTTGTTGGGACAC
1 TAAACATGGAATAGTTCGTCGGGACAC
33343368 TAAACATGGAATAGTTCGTCGGGACAC
1 TAAACATGGAATAGTTCGTCGGGACAC
33343395 TAAACATG
1 TAAACATG
33343403 AAGATCCCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.24
Consensus pattern (27 bp):
TAAACATGGAATAGTTCGTCGGGACAC
Found at i:33346548 original size:27 final size:27
Alignment explanation
Indices: 33346527--33347104 Score: 577
Period size: 27 Copynumber: 21.3 Consensus size: 27
33346517 TGGTATAACA
*
33346527 GTCATTTTACCCTATGAGGGTATTTCA
1 GTCATTTTACCCTATGAGGGTATTTCG
33346554 GTCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* * *
33346581 ATCATTCTACCCTATG-GGTGTATTTCA
1 GTCATTTTACCCTATGAGG-GTATTTCG
* *
33346608 GTCATTTTACCTTATG-GAGGTATTTTG
1 GTCATTTTACCCTATGAG-GGTATTTCG
*
33346635 GTCATTTTACCCTAT-AGGGGTACTTT-A
1 GTCATTTTACCCTATGA-GGGTA-TTTCG
*
33346662 GTCATTTTACCCTATAAAGGTATGGAGGTATTTCA
1 GTCATTTTACCCTAT----G-A--G-GGTATTTCG
* *
33346697 GTCATTCTACCTTATG-GAGGTATTTCG
1 GTCATTTTACCCTATGAG-GGTATTTCG
*
33346724 GTCATTCTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
33346751 GTCATTTTACCCTAT-AGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* *
33346777 GTCAATTTAACCTAT-AGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* *
33346803 ATCATTTTACCCTATGGGGGGTATTTCG
1 GTCATTTTACCCTAT-GAGGGTATTTCG
* *
33346831 ATCATTTTACCCTATGA-GATATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* * * *
33346857 ATCATTCTACCCTATGGGGGTATTTCA
1 GTCATTTTACCCTATGAGGGTATTTCG
*
33346884 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* * *
33346911 ATCATTTTACTCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
*
33346938 GTC-TTTCTACCCTAT-AGGGGTATTTCA
1 GTCATTT-TACCCTATGA-GGGTATTTCG
*
33346965 GTCA-TTTATCCTATG-GGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* *
33346990 GTCAATTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* * *
33347017 GTCATTCTACCCTATGAAGGTACTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* * *
33347044 GTCATTCTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTCG
* * * *
33347071 GTTAATTTACCCTATGGGGGTATTTCA
1 GTCATTTTACCCTATGAGGGTATTTCG
33347098 GTCATTT
1 GTCATTT
33347105 ATCGACCTCT
Statistics
Matches: 471, Mismatches: 56, Indels: 48
0.82 0.10 0.08
Matches are distributed among these distances:
25 13 0.03
26 92 0.20
27 310 0.66
28 31 0.07
31 1 0.00
33 1 0.00
34 5 0.01
35 18 0.04
ACGTcount: A:0.20, C:0.18, G:0.21, T:0.40
Consensus pattern (27 bp):
GTCATTTTACCCTATGAGGGTATTTCG
Found at i:33346745 original size:89 final size:89
Alignment explanation
Indices: 33346600--33347068 Score: 299
Period size: 80 Copynumber: 5.7 Consensus size: 89
33346590 CCCTATGGGT
* * *
33346600 GTATTTCAGTCATTTTACCTTATGGAGGTATTTTGGTCATTTTACCCTATAGGGGTACTTT-AGT
1 GTATTTCAGTCATTCTACCTTATGGAGGTATTTCGGTCATTCTACCCTATAGGGGTA-TTTCAGT
33346664 CATTTTACCCTATAAAGGTATGGAG
65 CATTTTACCCTATAAAGGTATGGAG
*
33346689 GTATTTCAGTCATTCTACCTTATGGAGGTATTTCGGTCATTCTACCCTAT-GAGGGTATTTCGGT
1 GTATTTCAGTCATTCTACCTTATGGAGGTATTTCGGTCATTCTACCCTATAG-GGGTATTTCAGT
33346753 CATTTTACCC--T--A--TA--G-G
65 CATTTTACCCTATAAAGGTATGGAG
* * * * *
33346769 GTATTTCGGTCAATT-TAACC-TATAG-GGTATTTCGATCATTTTACCCTATGGGGGGTATTTC-
1 GTATTTCAGTC-ATTCT-ACCTTATGGAGGTATTTCGGTCATTCTACCCTAT-AGGGGTATTTCA
33346830 GATCATTTTACCCTAT----G-A--GA-
63 G-TCATTTTACCCTATAAAGGTATGGAG
* * * * *
33346850 -TATTTC-GATCATTCTACCCTATGGGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTC-GA
1 GTATTTCAG-TCATTCTACCTTATGGAGGTATTTCGGTCATTCTACCCTATAGGGGTATTTCAG-
*
33346912 TCATTTTACTCTAT----G---GG-G
64 TCATTTTACCCTATAAAGGTATGGAG
* * * * * *
33346930 GTATTTCGGTCTTTCTACCCTATAGG-GGTATTTCAGTCATT-TATCCTAT-GGGGTATTTCGGT
1 GTATTTCAGTCATTCTACCTTAT-GGAGGTATTTCGGTCATTCTACCCTATAGGGGTATTTCAGT
*
33346992 CAATTTACCCTAT----G---GG-G
65 CATTTTACCCTATAAAGGTATGGAG
* * * * *
33347009 GTATTTCGGTCATTCTACCCTATGAAGGTACTTCGGTCATTCTACCCTATGGGGGTATTT
1 GTATTTCAGTCATTCTACCTTATGGAGGTATTTCGGTCATTCTACCCTATAGGGGTATTT
33347069 TGGTTAATTT
Statistics
Matches: 335, Mismatches: 21, Indels: 56
0.81 0.05 0.14
Matches are distributed among these distances:
78 1 0.00
79 91 0.27
80 92 0.27
81 75 0.22
82 4 0.01
83 2 0.01
85 1 0.00
87 1 0.00
88 4 0.01
89 64 0.19
ACGTcount: A:0.20, C:0.18, G:0.21, T:0.40
Consensus pattern (89 bp):
GTATTTCAGTCATTCTACCTTATGGAGGTATTTCGGTCATTCTACCCTATAGGGGTATTTCAGTC
ATTTTACCCTATAAAGGTATGGAG
Done.