Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 117 of 240
Found at i:36376261 original size:24 final size:25
Alignment explanation
Indices: 36376234--36376306 Score: 105
Period size: 25 Copynumber: 2.9 Consensus size: 25
36376224 AGCTTGTATA
36376234 AGCTTACCGATTTTAGCTCGTGA-G
1 AGCTTACCGATTTTAGCTCGTGATG
36376258 AGCTTACCGATTCTTAGCTCGT-ATG
1 AGCTTACCGATT-TTAGCTCGTGATG
*
36376283 AGCTTACCAATTTTCAGCTCGTGA
1 AGCTTACCGATTTT-AGCTCGTGA
36376307 CAGCATACTA
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
24 15 0.34
25 28 0.64
26 1 0.02
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (25 bp):
AGCTTACCGATTTTAGCTCGTGATG
Found at i:36376285 original size:25 final size:24
Alignment explanation
Indices: 36376223--36376304 Score: 103
Period size: 25 Copynumber: 3.3 Consensus size: 24
36376213 GGACACACCA
* *
36376223 TAGCTTGTATAAGCTTACCGATTT
1 TAGCTCGTATGAGCTTACCGATTT
36376247 TAGCTCGTGA-GAGCTTACCGATTCT
1 TAGCTCGT-ATGAGCTTACCGATT-T
*
36376272 TAGCTCGTATGAGCTTACCAATTT
1 TAGCTCGTATGAGCTTACCGATTT
36376296 TCAGCTCGT
1 T-AGCTCGT
36376305 GACAGCATAC
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
24 22 0.43
25 29 0.57
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (24 bp):
TAGCTCGTATGAGCTTACCGATTT
Found at i:36376326 original size:50 final size:49
Alignment explanation
Indices: 36376221--36376327 Score: 133
Period size: 50 Copynumber: 2.2 Consensus size: 49
36376211 GTGGACACAC
* * * * *
36376221 CATAGCTTGTATAAGCTTACCGATTTTAGCTCGTGAGAGCTTACCGATT
1 CATAGCTCGTATAAGCTTACCAATTTTAGCTCGTGACAGCATACCAATT
* * *
36376270 CTTAGCTCGTATGAGCTTACCAATTTTCAGCTCGTGACAGCATACTAATT
1 CATAGCTCGTATAAGCTTACCAATTTT-AGCTCGTGACAGCATACCAATT
36376320 CATAGCTC
1 CATAGCTC
36376328 ATATTACCAT
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
49 23 0.48
50 25 0.52
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (49 bp):
CATAGCTCGTATAAGCTTACCAATTTTAGCTCGTGACAGCATACCAATT
Found at i:36382737 original size:16 final size:16
Alignment explanation
Indices: 36382716--36382747 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
36382706 CATTCTGCAT
36382716 TTAAACAACAGCAGCA
1 TTAAACAACAGCAGCA
36382732 TTAAACAACAGCAGCA
1 TTAAACAACAGCAGCA
36382748 AAACACATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.25, G:0.12, T:0.12
Consensus pattern (16 bp):
TTAAACAACAGCAGCA
Found at i:36392128 original size:40 final size:40
Alignment explanation
Indices: 36392041--36392128 Score: 108
Period size: 40 Copynumber: 2.2 Consensus size: 40
36392031 TTGCACCTCG
*
36392041 GTGCCCTTATAAACACTTCGGTGTCCCTATTTGCACAATT
1 GTGCCCCTATAAACACTTCGGTGTCCCTATTTGCACAATT
* * *
36392081 GTTCCCCTATAAACACTTTGGTGTCCTTGA-TTGCAC-ATT
1 GTGCCCCTATAAACACTTCGGTGTCCCT-ATTTGCACAATT
36392120 CGTGCCCCT
1 -GTGCCCCT
36392129 GAATGCACTC
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
39 3 0.07
40 37 0.90
41 1 0.02
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.35
Consensus pattern (40 bp):
GTGCCCCTATAAACACTTCGGTGTCCCTATTTGCACAATT
Found at i:36392189 original size:40 final size:41
Alignment explanation
Indices: 36392094--36392189 Score: 97
Period size: 40 Copynumber: 2.4 Consensus size: 41
36392084 CCCCTATAAA
* * *
36392094 CACTTTGGTGT-CCTTGATTGCACATTCGTGCCCCTGAATG
1 CACTTTGGTGTCCCTAGATTACACACTCGTGCCCCTGAATG
*** * * *
36392134 CACTCAAGTGCCCCTAG-TTACACACTCGTGCTCCTGATTG
1 CACTTTGGTGTCCCTAGATTACACACTCGTGCCCCTGAATG
36392174 CACTTTGGTGTCCCTA
1 CACTTTGGTGTCCCTA
36392190 AAATTGAGTG
Statistics
Matches: 42, Mismatches: 13, Indels: 2
0.74 0.23 0.04
Matches are distributed among these distances:
40 38 0.90
41 4 0.10
ACGTcount: A:0.17, C:0.31, G:0.20, T:0.32
Consensus pattern (41 bp):
CACTTTGGTGTCCCTAGATTACACACTCGTGCCCCTGAATG
Found at i:36413332 original size:91 final size:91
Alignment explanation
Indices: 36413177--36413365 Score: 378
Period size: 91 Copynumber: 2.1 Consensus size: 91
36413167 TGGACTTTCA
36413177 TGGTTTTTAACTCATATTTACGATAATTGGTTTTATTTCGTTTCCATTTTTACTGGTTAAGTTTT
1 TGGTTTTTAACTCATATTTACGATAATTGGTTTTATTTCGTTTCCATTTTTACTGGTTAAGTTTT
36413242 TAGGTTTTAATTGGACTTTTAGACTT
66 TAGGTTTTAATTGGACTTTTAGACTT
36413268 TGGTTTTTAACTCATATTTACGATAATTGGTTTTATTTCGTTTCCATTTTTACTGGTTAAGTTTT
1 TGGTTTTTAACTCATATTTACGATAATTGGTTTTATTTCGTTTCCATTTTTACTGGTTAAGTTTT
36413333 TAGGTTTTAATTGGACTTTTAGACTT
66 TAGGTTTTAATTGGACTTTTAGACTT
36413359 TGGTTTT
1 TGGTTTT
36413366 GGGTTTTAAT
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 98 1.00
ACGTcount: A:0.20, C:0.10, G:0.16, T:0.54
Consensus pattern (91 bp):
TGGTTTTTAACTCATATTTACGATAATTGGTTTTATTTCGTTTCCATTTTTACTGGTTAAGTTTT
TAGGTTTTAATTGGACTTTTAGACTT
Found at i:36414628 original size:25 final size:25
Alignment explanation
Indices: 36414590--36414644 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
36414580 TGTACATGTC
*
36414590 TGCTCATACGAGCTATGA-ATCGGTA
1 TGCTCATACAAGCT-TGAGATCGGTA
* *
36414615 TGCTCATGCAAGCTTTAGATCGGTA
1 TGCTCATACAAGCTTGAGATCGGTA
36414640 TGCTC
1 TGCTC
36414645 TCACGAGCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 2 0.08
25 24 0.92
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.31
Consensus pattern (25 bp):
TGCTCATACAAGCTTGAGATCGGTA
Found at i:36418402 original size:45 final size:45
Alignment explanation
Indices: 36418327--36418582 Score: 202
Period size: 45 Copynumber: 5.7 Consensus size: 45
36418317 ATGGTTGCAG
* * *
36418327 GATGCCATAGTGTCTTTCAA-TCATGATCTTATTC-TTCTGATTCAT
1 GATGCCATAGTGTCTTTCAACT-ATGGTCTTACTCATT-TGAATCAT
* * * * *
36418372 GATCCCATAGCGTCTTTCAACTATGGTCTTACTCATTAGAACCGT
1 GATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTGAATCAT
* * * * ** *
36418417 GATGCCATAATGTCTTTCAGCTATGCTCTTACTCGTTAAAATCGT
1 GATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTGAATCAT
* ** *
36418462 GATGACATAACGTCTTTCAGCTATGGTCTTACTCATTTTCG-AT-AT
1 GATGCCATAGTGTCTTTCAACTATGGTCTTACTCA-TTT-GAATCAT
* * *
36418507 GATGCCATAGTTTCTTTCAACTATGGTCTTATTCAGTTTTG-GT-AT
1 GATGCCATAGTGTCTTTCAACTATGGTCTTACTCA--TTTGAATCAT
36418552 -ATTGCCATAGTGTCTTTCAACTATGGTCTTA
1 GA-TGCCATAGTGTCTTTCAACTATGGTCTTA
36418583 TTACTTCATT
Statistics
Matches: 174, Mismatches: 31, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
44 1 0.01
45 162 0.93
46 11 0.06
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.41
Consensus pattern (45 bp):
GATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTGAATCAT
Found at i:36420631 original size:40 final size:40
Alignment explanation
Indices: 36420548--36420635 Score: 104
Period size: 40 Copynumber: 2.2 Consensus size: 40
36420538 TTCCACCTCG
** * *
36420548 GTGCCCCTGTAAACACTTCGGTGTCCCTGTTTGCACAACT
1 GTGCCCCTGTAAACACTTCAATGTCCCTGATTACACAACT
* * **
36420588 GTGCCCTTGTAAACATTTCAATGTCCCTGATTACACATTT
1 GTGCCCCTGTAAACACTTCAATGTCCCTGATTACACAACT
36420628 GTGCCCCT
1 GTGCCCCT
36420636 AAATGCACTC
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.19, C:0.31, G:0.17, T:0.33
Consensus pattern (40 bp):
GTGCCCCTGTAAACACTTCAATGTCCCTGATTACACAACT
Found at i:36430400 original size:39 final size:40
Alignment explanation
Indices: 36430355--36430579 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
36430345 GCTCCTCGTT
* * * *
36430355 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
36430395 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
36430434 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
36430474 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
36430514 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
36430555 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
36430580 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 20, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
39 39 0.25
40 105 0.66
41 15 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:36430588 original size:41 final size:41
Alignment explanation
Indices: 36430511--36430588 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
36430501 TTTGTATCTC
* * *
36430511 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
36430552 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
36430589 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:36437374 original size:39 final size:40
Alignment explanation
Indices: 36437329--36437553 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
36437319 GCTCCTCGTT
* * * *
36437329 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
36437369 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
36437408 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
36437448 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
36437488 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
36437529 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
36437554 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 20, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
39 39 0.25
40 105 0.66
41 15 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:36437562 original size:41 final size:41
Alignment explanation
Indices: 36437485--36437562 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
36437475 TTTGTATCTC
* * *
36437485 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
36437526 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
36437563 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:36444343 original size:39 final size:40
Alignment explanation
Indices: 36444298--36444522 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
36444288 GCTCCTCGTT
* * * *
36444298 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
36444338 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
36444377 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
36444417 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
36444457 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
36444498 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
36444523 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 20, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
39 39 0.25
40 105 0.66
41 15 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:36444531 original size:41 final size:41
Alignment explanation
Indices: 36444454--36444531 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
36444444 TTTGTATCTC
* * *
36444454 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
36444495 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
36444532 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:36451316 original size:39 final size:40
Alignment explanation
Indices: 36451271--36451495 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
36451261 GCTCCTCGTT
* * * *
36451271 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
36451311 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
36451350 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
36451390 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
36451430 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
36451471 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
36451496 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 20, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
39 39 0.25
40 105 0.66
41 15 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:36451504 original size:41 final size:41
Alignment explanation
Indices: 36451427--36451504 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
36451417 TTTGTATCTC
* * *
36451427 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
36451468 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
36451505 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:36454612 original size:27 final size:27
Alignment explanation
Indices: 36454581--36454758 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
36454571 TAAATTGTAC
36454581 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36454608 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36454634 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36454662 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36454690 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
36454717 AGCACTAAGTGTGCAAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
36454744 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36454759 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36454749 original size:82 final size:81
Alignment explanation
Indices: 36454578--36454758 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 81
36454568 GATTAAATTG
* *
36454578 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
36454643 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
36454659 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
**
36454723 AAGTGTGC-AAGTTGATTA
64 AAGTGTGCGAA-TTGACCA
* *
36454741 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
36454759 GACTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
81 20 0.24
82 64 0.76
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:36462074 original size:29 final size:29
Alignment explanation
Indices: 36462032--36462303 Score: 221
Period size: 29 Copynumber: 9.4 Consensus size: 29
36462022 CCCTCAAATA
*
36462032 ATGAAAAGGGATAGCTTTGGCTATCGAAT
1 ATGAAAAGGGATAGCTTCGGCTATCGAAT
* *
36462061 ATGAACAGGGATAGCTTCGGCTATCAAAT
1 ATGAAAAGGGATAGCTTCGGCTATCGAAT
* * ** * *
36462090 ATGAAAAAGGA-CG-TTGACAACCATCAAAT
1 ATGAAAAGGGATAGCTT--CGGCTATCGAAT
* * * *
36462119 ATGAAGAGGGAT-GGTAACGACTATCGAAT
1 ATGAAAAGGGATAGCT-TCGGCTATCGAAT
*
36462148 ATGAAAAGGGATAGCTTTGGCTATCGAAT
1 ATGAAAAGGGATAGCTTCGGCTATCGAAT
* * * *
36462177 ATGGAAAGGGATAGCTTTGACTATCGATT
1 ATGAAAAGGGATAGCTTCGGCTATCGAAT
* * * *
36462206 ATGAAAAGGGACAACTTCAGCTATCGATT
1 ATGAAAAGGGATAGCTTCGGCTATCGAAT
* * *
36462235 ATGAAAAGGGAT-GGTGACGGCCATCGAAT
1 ATGAAAAGGGATAGCT-TCGGCTATCGAAT
* *
36462264 A-GAAATGGGATAGCTTCGGCTATTGAAT
1 ATGAAAAGGGATAGCTTCGGCTATCGAAT
*
36462292 ATGAAAACGGAT
1 ATGAAAAGGGAT
36462304 GGTTTTGACC
Statistics
Matches: 191, Mismatches: 43, Indels: 18
0.76 0.17 0.07
Matches are distributed among these distances:
27 2 0.01
28 22 0.12
29 164 0.86
30 3 0.02
ACGTcount: A:0.37, C:0.13, G:0.26, T:0.24
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTCGGCTATCGAAT
Found at i:36464985 original size:15 final size:16
Alignment explanation
Indices: 36464965--36464996 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
36464955 AAAAGAAGCC
36464965 ACTACAGAG-AAGAAG
1 ACTACAGAGTAAGAAG
36464980 ACTACAGAGTAAGAAG
1 ACTACAGAGTAAGAAG
36464996 A
1 A
36464997 AGAAGCAGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.53, C:0.12, G:0.25, T:0.09
Consensus pattern (16 bp):
ACTACAGAGTAAGAAG
Found at i:36471782 original size:102 final size:102
Alignment explanation
Indices: 36471600--36471939 Score: 382
Period size: 102 Copynumber: 3.4 Consensus size: 102
36471590 GATGAACACG
* *
36471600 TGTGTAGTACTGTGTGAAGGCTATTACGTGAATCGATAAATGATGGTCACATGTGTAGTACTAAG
1 TGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTCTAGTACTAAG
* * *
36471665 TGAAGGCTACAATGTGTACTGAGAAGCTTTGGTCACA
66 TGAAGACTACAATGTGTACAGAAAAGCTTTGGTCACA
* *
36471702 TGTGTAGTACTGTGTGAAGGATACTACGTGTATCGATAAATGATGGTCACATGTCTAGTACTAAG
1 TGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTCTAGTACTAAG
* *
36471767 TGAAGACTACTATGTGTACAGAAAAGCTTTGGTCACG
66 TGAAGACTACAATGTGTACAGAAAAGCTTTGGTCACA
* * * *** * * * *
36471804 TGTGTAATACTTTGTGAAGGCTACTACGTGAACCG-TAAAACTTGATCACGTGTGTAGTACTATG
1 TGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTCTAGTACTAAG
* * ** * * *
36471868 TGAAGGCTACTACATGAACCATAAAA-C-TTGATCA-A
66 TGAAGACTACAATGTGTA-CAGAAAAGCTTTGGTCACA
* *
36471903 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
1 -TGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGA
36471940 ATGATAAAAG
Statistics
Matches: 203, Mismatches: 32, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
100 37 0.18
101 37 0.18
102 129 0.64
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.30
Consensus pattern (102 bp):
TGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTCTAGTACTAAG
TGAAGACTACAATGTGTACAGAAAAGCTTTGGTCACA
Found at i:36471870 original size:50 final size:50
Alignment explanation
Indices: 36471596--36471933 Score: 293
Period size: 51 Copynumber: 6.7 Consensus size: 50
36471586 TATCGATGAA
* * * ***
36471596 CACGTGTGTAGTACTGTGTGAAGGCTATTACGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGGT
* * * * * * *
36471647 CACATGTGTAGTACTAAGTGAAGGCTACAATGTGTACTG-AGAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTA-AAAC-TTGGT
* * * * * ***
36471698 CACATGTGTAGTACTGTGTGAAGGATACTACGTGTATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGGT
* * * * * * *
36471749 CACATGTCTAGTACTAAGTGAAGACTACTATGTGTACAG-AAAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAA-C-TTGGT
* * *
36471800 CACGTGTGTAATACTTTGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGGT
* * *
36471850 CACGTGTGTAGTACTATGTGAAGGCTACTACATGAACCATAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGGT
*
36471900 CAAGTGTGTAGTACTATGTGAAGGCTACTACGTG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
36471934 TATCGAATGA
Statistics
Matches: 231, Mismatches: 49, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
49 4 0.02
50 84 0.36
51 136 0.59
52 6 0.03
53 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGGT
Found at i:36472173 original size:21 final size:22
Alignment explanation
Indices: 36472147--36472198 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
36472137 GAATATTGAC
**
36472147 TTGAAAATGGCAAAGTG-AATT
1 TTGAAAATGAAAAAGTGAAATT
*
36472168 TTGAAAGTGAAAAAGTGAAATT
1 TTGAAAATGAAAAAGTGAAATT
*
36472190 ATGAAAATG
1 TTGAAAATG
36472199 TAGAATTAGC
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 14 0.56
22 11 0.44
ACGTcount: A:0.48, C:0.02, G:0.23, T:0.27
Consensus pattern (22 bp):
TTGAAAATGAAAAAGTGAAATT
Found at i:36476156 original size:12 final size:12
Alignment explanation
Indices: 36476141--36476181 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
36476131 TTCTTCTTTA
36476141 TTTTTATTTTC-
1 TTTTTATTTTCT
36476152 TTTTTATTTTTCT
1 TTTTTA-TTTTCT
36476165 TTATTT-TTTTCT
1 TT-TTTATTTTCT
36476177 TTTTT
1 TTTTT
36476182 TATGTAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 9 0.33
12 13 0.48
13 2 0.07
14 3 0.11
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTATTTTCT
Found at i:36476171 original size:27 final size:26
Alignment explanation
Indices: 36476116--36476184 Score: 79
Period size: 27 Copynumber: 2.7 Consensus size: 26
36476106 CTTGTACTTG
* * *
36476116 TTTTTTTCTCTTATT-TTCTTCTTTA
1 TTTTTTTCTTTTTTTATTTTTCTTTA
36476141 TTTTTATT-TTCTTTTTATTTTTCTTTA
1 TTTTT-TTCTT-TTTTTATTTTTCTTTA
36476168 TTTTTTTCTTTTTTTAT
1 TTTTTTTCTTTTTTTAT
36476185 GTAATATTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
25 6 0.16
26 15 0.41
27 16 0.43
ACGTcount: A:0.09, C:0.10, G:0.00, T:0.81
Consensus pattern (26 bp):
TTTTTTTCTTTTTTTATTTTTCTTTA
Found at i:36476173 original size:17 final size:17
Alignment explanation
Indices: 36476126--36476162 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 17
36476116 TTTTTTTCTC
36476126 TTATTTTCTTCTTTATTT
1 TTATTTTCTT-TTTATTT
36476144 TTATTTTCTTTTTATTT
1 TTATTTTCTTTTTATTT
36476161 TT
1 TT
36476163 CTTTATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.11, C:0.08, G:0.00, T:0.81
Consensus pattern (17 bp):
TTATTTTCTTTTTATTT
Found at i:36477694 original size:21 final size:22
Alignment explanation
Indices: 36477617--36478115 Score: 347
Period size: 24 Copynumber: 21.7 Consensus size: 22
36477607 CTACCCTGTT
36477617 TTGGACAGCATTTATACATCAAA
1 TTGGACAGCA-TTATACATCAAA
36477640 TTGGACAGCATTAATATGC-TCAAA
1 TTGGACAGCATT-ATA--CATCAAA
*
36477664 ATGGACAGCATTATACATC-AA
1 TTGGACAGCATTATACATCAAA
* *
36477685 TTGGATAGCATCAATATGC-TCAAA
1 TTGGACAGCAT---TATACATCAAA
* *
36477709 ATAGACAGCATTATACATCAAA
1 TTGGACAGCATTATACATCAAA
*
36477731 TTGGACAGCATCAATATGC-TCTAAA
1 TTGGACAGCAT---TATACATC-AAA
*
36477756 -TAGACAGCATTATACATCAAA
1 TTGGACAGCATTATACATCAAA
*
36477777 TTGGACAACATCAATATAC-TCAAA
1 TTGGACAGCAT---TATACATCAAA
*
36477801 ATGGACAGCATTATACATCAAA
1 TTGGACAGCATTATACATCAAA
*
36477823 TTGGACAGCTTTAATATGC-TCAAA
1 TTGGACAGCATT-ATA--CATCAAA
*
36477847 TTGGACAGCATCAATATGC-TCAAA
1 TTGGACAGCAT---TATACATCAAA
*
36477871 ATGGACAGCATTATACATCAAA
1 TTGGACAGCATTATACATCAAA
* **
36477893 TTGGACAGCATCAATATGGTCAAA
1 TTGGACAGCAT-TATA-CATCAAA
* *
36477917 ATGTACAGCATTATACATCAAA
1 TTGGACAGCATTATACATCAAA
* *
36477939 TTAGACAGCATCAATATGC-TCAAA
1 TTGGACAGCAT---TATACATCAAA
*
36477963 ATGGACAGCATTATACATCAAA
1 TTGGACAGCATTATACATCAAA
* *
36477985 TTGGACAGTATCAATATGC-TCAAA
1 TTGGACAG---CATTATACATCAAA
* *
36478009 ATGTACAGCATTATACATCAAA
1 TTGGACAGCATTATACATCAAA
*
36478031 TTGGACAACATCAATATAC-TCAAA
1 TTGGACAGCAT---TATACATCAAA
*
36478055 ATGGACAGCATTATACATCAAA
1 TTGGACAGCATTATACATCAAA
* *
36478077 TTAGACAGCATCAATATGC-TCAAA
1 TTGGACAGCAT---TATACATCAAA
*
36478101 ATGGACAGCATTATA
1 TTGGACAGCATTATA
36478116 ACATATAAAA
Statistics
Matches: 376, Mismatches: 57, Indels: 88
0.72 0.11 0.17
Matches are distributed among these distances:
21 50 0.13
22 110 0.29
23 27 0.07
24 153 0.41
25 33 0.09
26 2 0.01
27 1 0.00
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (22 bp):
TTGGACAGCATTATACATCAAA
Found at i:36477750 original size:46 final size:46
Alignment explanation
Indices: 36477618--36477857 Score: 374
Period size: 46 Copynumber: 5.2 Consensus size: 46
36477608 TACCCTGTTT
*
36477618 TGGACAGCATTTATACATCAAATTGGACAGCATTAATATGCTCAAAA
1 TGGACAGCA-TTATACATCAAATTGGACAGCATCAATATGCTCAAAA
*
36477665 TGGACAGCATTATACATC-AATTGGATAGCATCAATATGCTCAAAA
1 TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
* *
36477710 TAGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCTAAA
1 TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
* * *
36477756 TAGACAGCATTATACATCAAATTGGACAACATCAATATACTCAAAA
1 TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
* * *
36477802 TGGACAGCATTATACATCAAATTGGACAGCTTTAATATGCTCAAAT
1 TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
36477848 TGGACAGCAT
1 TGGACAGCAT
36477858 CAATATGCTC
Statistics
Matches: 178, Mismatches: 14, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
45 42 0.24
46 127 0.71
47 9 0.05
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (46 bp):
TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
Found at i:36477853 original size:116 final size:116
Alignment explanation
Indices: 36477726--36477973 Score: 406
Period size: 116 Copynumber: 2.1 Consensus size: 116
36477716 GCATTATACA
*
36477726 TCAAATTGGACAGCATCAATATGCTCTAAATAGACAGCATTATACATCAAATTGGACAACATCAA
1 TCAAATTGGACAGCATCAATATGCTCAAAATAGACAGCATTATACATCAAATTGGACAACATCAA
* * *
36477791 TATACTCAAAATGGACAGCATTATACATCAAATTGGACAGCTTTAATATGC
66 TATACTCAAAATGGACAGCATTATACATCAAATTAGACAGCATCAATATGC
* *
36477842 TCAAATTGGACAGCATCAATATGCTCAAAATGGACAGCATTATACATCAAATTGGACAGCATCAA
1 TCAAATTGGACAGCATCAATATGCTCAAAATAGACAGCATTATACATCAAATTGGACAACATCAA
** *
36477907 TATGGTCAAAATGTACAGCATTATACATCAAATTAGACAGCATCAATATGC
66 TATACTCAAAATGGACAGCATTATACATCAAATTAGACAGCATCAATATGC
*
36477958 TCAAAATGGACAGCAT
1 TCAAATTGGACAGCAT
36477974 TATACATCAA
Statistics
Matches: 122, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
116 122 1.00
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (116 bp):
TCAAATTGGACAGCATCAATATGCTCAAAATAGACAGCATTATACATCAAATTGGACAACATCAA
TATACTCAAAATGGACAGCATTATACATCAAATTAGACAGCATCAATATGC
Found at i:36477863 original size:162 final size:162
Alignment explanation
Indices: 36477629--36478019 Score: 553
Period size: 162 Copynumber: 2.4 Consensus size: 162
36477619 GGACAGCATT
* * *
36477629 TATACATCAAATTGGACAGCATTAATATGC-TCAAAATGGACAGCATT-ATA--CATC-AATTGG
1 TATAC-TCAAAATGGACAGCATT-ATA--CATCAAATTGGACAGCTTTAATATGC-TCAAATTGG
* *
36477689 ATAGCATCAATATGCTCAAAATAGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCTA
61 ACAGCATCAATATGCTCAAAATAGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAA
*
36477754 AATAG-ACAGCATTATACATCAAATTGGACAACATCAA
126 AAT-GTACAGCATTATACATCAAATTAGACAACATCAA
36477791 TATACTCAAAATGGACAGCATTATACATCAAATTGGACAGCTTTAATATGCTCAAATTGGACAGC
1 TATACTCAAAATGGACAGCATTATACATCAAATTGGACAGCTTTAATATGCTCAAATTGGACAGC
* *
36477856 ATCAATATGCTCAAAATGGACAGCATTATACATCAAATTGGACAGCATCAATATGGTCAAAATGT
66 ATCAATATGCTCAAAATAGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAATGT
*
36477921 ACAGCATTATACATCAAATTAGACAGCATCAA
131 ACAGCATTATACATCAAATTAGACAACATCAA
* * * *
36477953 TATGCTCAAAATGGACAGCATTATACATCAAATTGGACAG-TATCAATATGCTCAAAATGTACAG
1 TATACTCAAAATGGACAGCATTATACATCAAATTGGACAGCT-TTAATATGCTCAAATTGGACAG
36478017 CAT
65 CAT
36478020 TATACATCAA
Statistics
Matches: 209, Mismatches: 13, Indels: 14
0.89 0.06 0.06
Matches are distributed among these distances:
158 1 0.00
159 15 0.07
160 6 0.03
161 20 0.10
162 167 0.80
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (162 bp):
TATACTCAAAATGGACAGCATTATACATCAAATTGGACAGCTTTAATATGCTCAAATTGGACAGC
ATCAATATGCTCAAAATAGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAATGT
ACAGCATTATACATCAAATTAGACAACATCAA
Found at i:36477892 original size:46 final size:46
Alignment explanation
Indices: 36477842--36478115 Score: 476
Period size: 46 Copynumber: 6.0 Consensus size: 46
36477832 TTTAATATGC
36477842 TCAAATTGGACAGCATCAATATGCTCAAAATGGACAGCATTATACA
1 TCAAATTGGACAGCATCAATATGCTCAAAATGGACAGCATTATACA
* *
36477888 TCAAATTGGACAGCATCAATATGGTCAAAATGTACAGCATTATACA
1 TCAAATTGGACAGCATCAATATGCTCAAAATGGACAGCATTATACA
*
36477934 TCAAATTAGACAGCATCAATATGCTCAAAATGGACAGCATTATACA
1 TCAAATTGGACAGCATCAATATGCTCAAAATGGACAGCATTATACA
* *
36477980 TCAAATTGGACAGTATCAATATGCTCAAAATGTACAGCATTATACA
1 TCAAATTGGACAGCATCAATATGCTCAAAATGGACAGCATTATACA
* *
36478026 TCAAATTGGACAACATCAATATACTCAAAATGGACAGCATTATACA
1 TCAAATTGGACAGCATCAATATGCTCAAAATGGACAGCATTATACA
*
36478072 TCAAATTAGACAGCATCAATATGCTCAAAATGGACAGCATTATA
1 TCAAATTGGACAGCATCAATATGCTCAAAATGGACAGCATTATA
36478116 ACATATAAAA
Statistics
Matches: 213, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 213 1.00
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.25
Consensus pattern (46 bp):
TCAAATTGGACAGCATCAATATGCTCAAAATGGACAGCATTATACA
Found at i:36477892 original size:92 final size:92
Alignment explanation
Indices: 36477617--36478113 Score: 436
Period size: 92 Copynumber: 5.4 Consensus size: 92
36477607 CTACCCTGTT
*
36477617 TTGGACAGCATTTATACATCAAATTGGACAGCATTAATATGCTCAAAATGGACAGCAT---TATA
1 TTGGACAGCA-TTATACATCAAATTGGACAGCATTAATATGCTCAAATTGGACAGCATCAATATA
* * *
36477679 CATC-AATTGGATAGCATCAATATGC-TCAAA
65 C-TCAAAATGGACAGCAT---TATACATCAAA
* * * *
36477709 ATAGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCTAAA-TAGACAGCAT---TATA
1 TTGGACAGCATTATACATCAAATTGGACAGCATTAATATGCTC-AAATTGGACAGCATCAATATA
* *
36477770 CATCAAATTGGACAACATCAATATAC-TCAAA
65 C-TCAAAATGGACAGCAT---TATACATCAAA
* * *
36477801 ATGGACAGCATTATACATCAAATTGGACAGCTTTAATATGCTCAAATTGGACAGCATCAATATGC
1 TTGGACAGCATTATACATCAAATTGGACAGCATTAATATGCTCAAATTGGACAGCATCAATATAC
36477866 TCAAAATGGACAGCATTATACATCAAA
66 TCAAAATGGACAGCATTATACATCAAA
* ** * * *
36477893 TTGGACAGCATCAATATGGTCAAAATGTACAGCATT-ATA--CATCAAATTAGACAGCATCAATA
1 TTGGACAGCAT-TATA-CATCAAATTGGACAGCATTAATATGC-TCAAATTGGACAGCATCAATA
*
36477955 TGCTCAAAATGGACAGCATTATACATCAAA
63 TACTCAAAATGGACAGCATTATACATCAAA
* * * * *
36477985 TTGGACAGTATCAATATGC-TCAAAATGTACAGCATT-ATA--CATCAAATTGGACAACATCAAT
1 TTGGACAG---CATTATACATCAAATTGGACAGCATTAATATGC-TCAAATTGGACAGCATCAAT
36478046 ATACTCAAAATGGACAGCATTATACATCAAA
62 ATACTCAAAATGGACAGCATTATACATCAAA
* * *
36478077 TTAGACAGCATCAATATGC-TCAAAATGGACAGCATTA
1 TTGGACAGCAT---TATACATCAAATTGGACAGCATTA
36478114 TAACATATAA
Statistics
Matches: 356, Mismatches: 32, Indels: 33
0.85 0.08 0.08
Matches are distributed among these distances:
89 2 0.01
91 58 0.16
92 254 0.71
93 6 0.02
94 30 0.08
95 6 0.02
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.26
Consensus pattern (92 bp):
TTGGACAGCATTATACATCAAATTGGACAGCATTAATATGCTCAAATTGGACAGCATCAATATAC
TCAAAATGGACAGCATTATACATCAAA
Found at i:36480483 original size:39 final size:40
Alignment explanation
Indices: 36480382--36480645 Score: 317
Period size: 40 Copynumber: 6.7 Consensus size: 40
36480372 TTGAATGATG
* *
36480382 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
36480421 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
36480462 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
36480501 TCCGAGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
36480540 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
36480580 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
36480619 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
36480646 AACGAGGAGC
Statistics
Matches: 204, Mismatches: 13, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
39 73 0.36
40 118 0.58
41 12 0.06
42 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:36480617 original size:80 final size:80
Alignment explanation
Indices: 36480382--36480645 Score: 349
Period size: 80 Copynumber: 3.3 Consensus size: 80
36480372 TTGAATGATG
* * * * *
36480382 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
* *
36480445 TTGTGCGAGATACTAAT
64 TTGTGCGAGTTACTAAA
* * *
36480462 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGAGCTAAG-CCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
36480525 GTGCGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
36480540 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
36480605 GTGCGAGTTACTATAA
66 GTGCGAGTTACTA-AA
*
36480621 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36480646 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
78 35 0.22
79 58 0.36
80 67 0.41
81 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:36480663 original size:80 final size:77
Alignment explanation
Indices: 36480383--36480678 Score: 296
Period size: 80 Copynumber: 3.7 Consensus size: 77
36480373 TGAATGATGT
* * **
36480383 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAG-GACTA-ATCCGGGTTAAG-TCCCGAAGGCATT
* *
36480446 TGTGCGAGATACTAATT
62 TGTGCGAGTTACTAA-A
* * *
36480463 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGAGCTAAG-CCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-GACTAA-TCCGGGTTAAGTCCCGAAGGCATTTG
36480526 TGCGAGTTACTAAA
64 TGCGAGTTACTAAA
* *
36480540 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-GACT-AATCCGGGTTAAGTCCCGAAGGCATTT
36480605 GTGCGAGTTACTATAA
63 GTGCGAGTTACTA-AA
* ** * *
36480621 CCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGA-CTA-ATCCGGGTTAAGTCCCGAAGG
36480679 TACGTGATTT
Statistics
Matches: 187, Mismatches: 19, Indels: 21
0.82 0.08 0.09
Matches are distributed among these distances:
78 35 0.19
79 72 0.39
80 78 0.42
81 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (77 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGACTAATCCGGGTTAAGTCCCGAAGGCATTTGTG
CGAGTTACTAAA
Found at i:36488473 original size:39 final size:40
Alignment explanation
Indices: 36488372--36488635 Score: 317
Period size: 40 Copynumber: 6.7 Consensus size: 40
36488362 TTGAATGATG
* *
36488372 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
36488411 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
36488452 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
36488491 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * * *
36488530 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
36488570 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
36488609 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
36488636 AACGAGGAGC
Statistics
Matches: 204, Mismatches: 13, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
39 75 0.37
40 116 0.57
41 12 0.06
42 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:36488653 original size:80 final size:77
Alignment explanation
Indices: 36488373--36488668 Score: 296
Period size: 80 Copynumber: 3.7 Consensus size: 77
36488363 TGAATGATGT
* * **
36488373 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAG-GACTA-ATCCGGGTTAAG-TCCCGAAGGCATT
* *
36488436 TGTGCGAGATACTAATT
62 TGTGCGAGTTACTAA-A
* *
36488453 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-GACTAA-TCCGGGTTAAGTCCCGAAGGCATTTG
36488516 TGCGAGTTACTAAA
64 TGCGAGTTACTAAA
* * *
36488530 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-GACT-AATCCGGGTTAAGTCCCGAAGGCATTT
36488595 GTGCGAGTTACTATAA
63 GTGCGAGTTACTA-AA
* ** * *
36488611 CCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGA-CTA-ATCCGGGTTAAGTCCCGAAGG
36488669 TACGTGATTT
Statistics
Matches: 187, Mismatches: 19, Indels: 21
0.82 0.08 0.09
Matches are distributed among these distances:
78 35 0.19
79 73 0.39
80 77 0.41
81 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (77 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGACTAATCCGGGTTAAGTCCCGAAGGCATTTGTG
CGAGTTACTAAA
Found at i:36501313 original size:62 final size:62
Alignment explanation
Indices: 36501216--36501335 Score: 222
Period size: 62 Copynumber: 1.9 Consensus size: 62
36501206 TTACTCATCT
36501216 TTTTATTTTCAAGTTAAATTATGGGTAAATATACAAATAGTCACACTACTATAAGTGTACCC
1 TTTTATTTTCAAGTTAAATTATGGGTAAATATACAAATAGTCACACTACTATAAGTGTACCC
* *
36501278 TTTTATTTTCAATTTAAATTATGGGTAAGTATACAAATAGTCACACTACTATAAGTGT
1 TTTTATTTTCAAGTTAAATTATGGGTAAATATACAAATAGTCACACTACTATAAGTGT
36501336 GCTTCCATTG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 56 1.00
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (62 bp):
TTTTATTTTCAAGTTAAATTATGGGTAAATATACAAATAGTCACACTACTATAAGTGTACCC
Found at i:36503786 original size:24 final size:24
Alignment explanation
Indices: 36503752--36503806 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
36503742 GCTTATTGTC
* * *
36503752 ACTATCATCATAGTTTGCACTGTT
1 ACTATCATCATAGCTCGCACTATT
*
36503776 ATTATCATCATAGCTCGCACTATT
1 ACTATCATCATAGCTCGCACTATT
36503800 ACTATCA
1 ACTATCA
36503807 ACTTCTTTGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (24 bp):
ACTATCATCATAGCTCGCACTATT
Found at i:36508044 original size:14 final size:15
Alignment explanation
Indices: 36508013--36508044 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
36508003 TATAGTGTAC
36508013 ATACGTTTTTATAGT
1 ATACGTTTTTATAGT
36508028 ATACGTTTTTATA-T
1 ATACGTTTTTATAGT
36508042 ATA
1 ATA
36508045 TAAATATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.31, C:0.06, G:0.09, T:0.53
Consensus pattern (15 bp):
ATACGTTTTTATAGT
Found at i:36512426 original size:14 final size:14
Alignment explanation
Indices: 36512409--36512450 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
36512399 GTGATGTGAA
36512409 AAAAT-AAAAAGATG
1 AAAATGAAAAA-ATG
36512423 AAAATGAAAAAATG
1 AAAATGAAAAAATG
* *
36512437 AAAAAGTAAAAATG
1 AAAATGAAAAAATG
36512451 GAGAGGCTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 20 0.80
15 5 0.20
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (14 bp):
AAAATGAAAAAATG
Found at i:36512430 original size:22 final size:22
Alignment explanation
Indices: 36512405--36512450 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
36512395 AAAAGTGATG
*
36512405 TGAAAAAAT-AAAAAGATGAAAA
1 TGAAAAAATGAAAAAG-TAAAAA
36512427 TGAAAAAATGAAAAAGTAAAAA
1 TGAAAAAATGAAAAAGTAAAAA
36512449 TG
1 TG
36512451 GAGAGGCTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (22 bp):
TGAAAAAATGAAAAAGTAAAAA
Found at i:36513980 original size:132 final size:132
Alignment explanation
Indices: 36513800--36514702 Score: 1375
Period size: 132 Copynumber: 6.8 Consensus size: 132
36513790 AACAGCAGAA
*
36513800 CAGATCAAAGATGGCAAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
1 CAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
* * * * *
36513865 TA-TCTCCCTGGGCAGCAGTGGAATAGATTGAGGATTTCAGATCTTATCTCCCTAAGTAGTAGTG
66 TACT-TCCCTGGACAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTG
36513929 GAG
130 GAG
* * * * * *
36513932 CAAATCGAAGATGGCGGATTTTACCTCCTTGAGGTTACAGTGGAGTACATTGAAGTCAGTAATTC
1 CAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
* * * * *
36513997 TA-TCTCCCTGGGCAGCAGTGGAATAGACTGAAGATTTAAGATCTTGTCTTCCT--GCA-TAGAT
66 TACT-TCCCTGGACAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAG-T
*
36514058 AGCAAAG
129 -G--GAG
* * *
36514065 CAGATCGAAGACGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
1 CAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
* * * *
36514130 TACTTCTCTGGATAGCAGCAGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGCAGTGG
66 TACTTCCCTGGACAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGG
36514195 AG
131 AG
*
36514197 CAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
1 CAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
* * * * *
36514262 TACTTCCCTGGACAGCAGCGGAATAGATTAAAGATTTTAGATATTGTTTCCCTAAGCAGTAGCGG
66 TACTTCCCTGGACAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGG
36514327 AG
131 AG
* *
36514329 CAGATCAAATATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACACTGAAGCCAGTAATTC
1 CAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
*
36514394 TACTTCCCTGGACAGCAGCGGAATAGATTGAGGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGG
66 TACTTCCCTGGACAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGG
36514459 AG
131 AG
*
36514461 CAGATCAAAGATGGCAGATTTTACCTTCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
1 CAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
36514526 TACTTCCCTGGACAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGG
66 TACTTCCCTGGACAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGG
36514591 AG
131 AG
**
36514593 CAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTGTAGTGGAGTACATTGAAGCCAGTAATTC
1 CAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
*
36514658 TACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTT
66 TACTTCCCTGGACAGCAGCGGAATAGATTGAAGATTTCAGATCTT
36514703 ACCTCTTTAG
Statistics
Matches: 704, Mismatches: 59, Indels: 16
0.90 0.08 0.02
Matches are distributed among these distances:
129 3 0.00
130 3 0.00
131 1 0.00
132 586 0.83
133 103 0.15
134 2 0.00
135 4 0.01
136 2 0.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.28
Consensus pattern (132 bp):
CAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
TACTTCCCTGGACAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGG
AG
Found at i:36514872 original size:100 final size:100
Alignment explanation
Indices: 36514697--36515186 Score: 714
Period size: 100 Copynumber: 4.9 Consensus size: 100
36514687 GAAGATTTCA
* * * * * *
36514697 GATCTTACCTCTTTAGCAGTGCGGTGGAATAGATTGAAGTTACGACGGCGAATCTGGTTTCCCTG
1 GATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTG
*
36514762 ATATTACAATTAAAAAGATTGAAGCCACAACGGCG
66 ATATTGCAATTAAAAAGATTGAAGCCACAACGGCG
36514797 GATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTG
1 GATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTG
36514862 ATATTGCAATTAAAAAGATTGAAGCCACAACGGCG
66 ATATTGCAATTAAAAAGATTGAAGCCACAACGGCG
** *
36514897 GATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCAAATCTGGTTTCCCTA
1 GATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTG
36514962 ATATTGCAATTAAAAAGATTGAAGCCACAACGGCG
66 ATATTGCAATTAAAAAGATTGAAGCCACAACGGCG
* * * *
36514997 GATCTTACTTCCTTAGCAGTGCAGCGGAATAGATTGAAGCTACAACGGCGGATCTTGTTTCCCTG
1 GATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTG
* * *
36515062 ATATTGCAATTAAAAATATTGAAGCCACAGCGACG
66 ATATTGCAATTAAAAAGATTGAAGCCACAACGGCG
* * ** * *
36515097 GATCTTACTTCCCT-GACGGTGTGGTGGAACAGATTGAAGTTACGACGGCGGATCTGGTTTCCCC
1 GATCTTACTTCCTTAG-CAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCT
* * *
36515161 GACATTGCAGTTGAACAA-ATTGAAGC
65 GATATTGCAATT-AAAAAGATTGAAGC
36515187 TACACTTATC
Statistics
Matches: 355, Mismatches: 33, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
99 1 0.00
100 350 0.99
101 4 0.01
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (100 bp):
GATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTG
ATATTGCAATTAAAAAGATTGAAGCCACAACGGCG
Found at i:36515177 original size:50 final size:50
Alignment explanation
Indices: 36514727--36515190 Score: 306
Period size: 50 Copynumber: 9.3 Consensus size: 50
36514717 GCGGTGGAAT
* * * * * * * *
36514727 AGATTGAAGTTACGACGGCGAATCTGGTTTCCCTGATATTACAATTAAAA
1 AGATTGAAGCTACAACGGCGGATCTTGTTTCCCTGACATTGCAGTTGAAA
* ** * * * *
36514777 AGATTGAAGCCACAACGGCGGATCTTACTT-CCTTAGCAGTGCAGTGGAAC
1 AGATTGAAGCTACAACGGCGGATCTTGTTTCCCTGA-CATTGCAGTTGAAA
* * * * *
36514827 AGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGATATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGGATCTTGTTTCCCTGACATTGCAGTTGAAA
* ** * * * *
36514877 AGATTGAAGCCACAACGGCGGATCTTACTT-CCTTAGCAGTGCAGTGGAAC
1 AGATTGAAGCTACAACGGCGGATCTTGTTTCCCTGA-CATTGCAGTTGAAA
* ** * * * * *
36514927 AGATTGAAGCTACGACGGCAAATCTGGTTTCCCTAATATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGGATCTTGTTTCCCTGACATTGCAGTTGAAA
* ** * * ** *
36514977 AGATTGAAGCCACAACGGCGGATCTTACTT-CCTTAGCAGTGCAGCGGAAT
1 AGATTGAAGCTACAACGGCGGATCTTGTTTCCCTGA-CATTGCAGTTGAAA
* * *
36515027 AGATTGAAGCTACAACGGCGGATCTTGTTTCCCTGATATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGGATCTTGTTTCCCTGACATTGCAGTTGAAA
* * * * ** ** ** * *
36515077 ATATTGAAGCCACAGCGACGGATCTTACTTCCCTGACGGTGTGGTGGAAC
1 AGATTGAAGCTACAACGGCGGATCTTGTTTCCCTGACATTGCAGTTGAAA
* * * *
36515127 AGATTGAAGTTACGACGGCGGATCTGGTTTCCCCGACATTGCAGTTGAACA
1 AGATTGAAGCTACAACGGCGGATCTTGTTTCCCTGACATTGCAGTTGAA-A
36515178 A-ATTGAAGCTACA
1 AGATTGAAGCTACA
36515191 CTTATCTCCC
Statistics
Matches: 295, Mismatches: 112, Indels: 14
0.70 0.27 0.03
Matches are distributed among these distances:
49 12 0.04
50 270 0.92
51 13 0.04
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.26
Consensus pattern (50 bp):
AGATTGAAGCTACAACGGCGGATCTTGTTTCCCTGACATTGCAGTTGAAA
Found at i:36519546 original size:19 final size:20
Alignment explanation
Indices: 36519524--36519565 Score: 52
Period size: 18 Copynumber: 2.2 Consensus size: 20
36519514 ATAAATTCGG
*
36519524 AATAATAAAATAATAAA-AT
1 AATAAGAAAATAATAAATAT
*
36519543 AAT-AGGAAATAATAAATAT
1 AATAAGAAAATAATAAATAT
36519562 AATA
1 AATA
36519566 TTAGGCTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (20 bp):
AATAAGAAAATAATAAATAT
Found at i:36519554 original size:10 final size:8
Alignment explanation
Indices: 36519524--36519565 Score: 57
Period size: 8 Copynumber: 4.9 Consensus size: 8
36519514 ATAAATTCGG
36519524 AATAATAA
1 AATAATAA
36519532 AATAATAA
1 AATAATAA
36519540 AATAATAGGA
1 AATAATA--A
36519550 AATAATAA
1 AATAATAA
36519558 ATATAATA
1 A-ATAATA
36519566 TTAGGCTCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
8 17 0.55
9 6 0.19
10 8 0.26
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (8 bp):
AATAATAA
Found at i:36521616 original size:21 final size:22
Alignment explanation
Indices: 36521591--36521640 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
36521581 AAATATTTTT
*
36521591 TAAAAAT-ATATAAATAAATTC
1 TAAAAATAATATAAATAAATCC
*
36521612 -AAAAATAATATATATAAATCC
1 TAAAAATAATATAAATAAATCC
36521633 ATAAAAAT
1 -TAAAAAT
36521641 TAAAAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 6 0.25
21 12 0.50
23 6 0.25
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (22 bp):
TAAAAATAATATAAATAAATCC
Found at i:36535392 original size:23 final size:23
Alignment explanation
Indices: 36535348--36535435 Score: 79
Period size: 23 Copynumber: 3.8 Consensus size: 23
36535338 TTAATGTTCA
**
36535348 CGAACATGTTCATTTAAC-TTAAT
1 CGAACATGTTCA-CGAACATTAAT
*
36535371 CGAACATGTTCACGAACATTAAA
1 CGAACATGTTCACGAACATTAAT
* *
36535394 CAAACATGTTCATGAACATATAAT
1 CGAACATGTTCACGAACAT-TAAT
* * *
36535418 TGAATATGTTCACAAACA
1 CGAACATGTTCACGAACA
36535436 ATGTTAATAA
Statistics
Matches: 52, Mismatches: 11, Indels: 3
0.79 0.17 0.05
Matches are distributed among these distances:
22 3 0.06
23 33 0.63
24 16 0.31
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (23 bp):
CGAACATGTTCACGAACATTAAT
Found at i:36538736 original size:25 final size:27
Alignment explanation
Indices: 36538681--36538736 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 27
36538671 ATTTTCATAT
* *
36538681 ATATATTTGAACCACAATCAAACTTTC
1 ATATAATTGAACCACAATCAAACGTTC
*
36538708 -TATAATTGCACCA-AATCAAA-GTTC
1 ATATAATTGAACCACAATCAAACGTTC
36538732 ATATA
1 ATATA
36538737 TCAAATTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
24 3 0.12
25 11 0.44
26 11 0.44
ACGTcount: A:0.43, C:0.20, G:0.05, T:0.32
Consensus pattern (27 bp):
ATATAATTGAACCACAATCAAACGTTC
Found at i:36540384 original size:9 final size:9
Alignment explanation
Indices: 36540365--36540401 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
36540355 TGATTTTTCG
*
36540365 AATTAGAAT
1 AATTCGAAT
*
36540374 AACTCGAAT
1 AATTCGAAT
36540383 AATTCGAAT
1 AATTCGAAT
36540392 AATTCGAAT
1 AATTCGAAT
36540401 A
1 A
36540402 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:36544848 original size:19 final size:19
Alignment explanation
Indices: 36544805--36544849 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
36544795 TTTTATTGTA
36544805 ACAAATAATAAAATATCTC
1 ACAAATAATAAAATATCTC
36544824 -CTAAATAATAAAATATCTC
1 AC-AAATAATAAAATATCTC
36544843 ACAAATA
1 ACAAATA
36544850 CTAATATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 1 0.04
19 22 0.92
20 1 0.04
ACGTcount: A:0.58, C:0.16, G:0.00, T:0.27
Consensus pattern (19 bp):
ACAAATAATAAAATATCTC
Found at i:36545879 original size:21 final size:22
Alignment explanation
Indices: 36545853--36545911 Score: 86
Period size: 21 Copynumber: 2.8 Consensus size: 22
36545843 AGCTACAAAA
* *
36545853 TTCTACCGGTAGAACTCCTA-G
1 TTCTACCGATACAACTCCTAGG
36545874 TTCTACCGATACAACT-CTAGG
1 TTCTACCGATACAACTCCTAGG
36545895 TTCTACCGATACAACTC
1 TTCTACCGATACAACTC
36545912 GGACTACTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
20 3 0.09
21 31 0.91
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.29
Consensus pattern (22 bp):
TTCTACCGATACAACTCCTAGG
Found at i:36552063 original size:29 final size:29
Alignment explanation
Indices: 36552000--36552067 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
36551990 TAATCAACCG
36552000 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
36552029 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
36552058 CGCACACTTA
1 CGCACACTTA
36552068 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:36552179 original size:174 final size:174
Alignment explanation
Indices: 36551889--36552216 Score: 638
Period size: 174 Copynumber: 1.9 Consensus size: 174
36551879 AACTCAAGGT
* *
36551889 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
36551954 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
36552019 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
36552063 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
36552128 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
36552193 ACTTTAAACTCACACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
36552217 TGTACAATTT
Statistics
Matches: 152, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
174 152 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:36552210 original size:29 final size:29
Alignment explanation
Indices: 36552176--36552247 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 29
36552166 ATCAACCGCG
* * *
36552176 CACACTTAGTGCCATGCACTTTAAACTCA
1 CACACTTAGTGCCATACAATTTAAACCCA
** *
36552205 CACACTTAGTGCTGTACAATTTAAACCCG
1 CACACTTAGTGCCATACAATTTAAACCCA
36552234 CACACTTAGTGCCA
1 CACACTTAGTGCCA
36552248 ATCTCATGAC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.26
Consensus pattern (29 bp):
CACACTTAGTGCCATACAATTTAAACCCA
Found at i:36569168 original size:29 final size:29
Alignment explanation
Indices: 36569109--36569168 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 29
36569099 AAATGAGAAT
* * ** **
36569109 ATTCAAAAGTTGAAGGGTTAAAAGTGTAA
1 ATTCAAAAATTAAAGGACTAAAAGTAAAA
36569138 ATTCAAAAATTAAAGGACTAAAAGTAAAA
1 ATTCAAAAATTAAAGGACTAAAAGTAAAA
36569167 AT
1 AT
36569169 ATTCAAAAGT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.53, C:0.05, G:0.17, T:0.25
Consensus pattern (29 bp):
ATTCAAAAATTAAAGGACTAAAAGTAAAA
Found at i:36569299 original size:14 final size:15
Alignment explanation
Indices: 36569274--36569303 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
36569264 ATTAGATGTG
36569274 TGGATGAATTATGGC
1 TGGATGAATTATGGC
36569289 TGGAT-AATTATGGC
1 TGGATGAATTATGGC
36569303 T
1 T
36569304 ATTGGATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.27, C:0.07, G:0.30, T:0.37
Consensus pattern (15 bp):
TGGATGAATTATGGC
Found at i:36576340 original size:25 final size:26
Alignment explanation
Indices: 36576272--36576340 Score: 72
Period size: 25 Copynumber: 2.7 Consensus size: 26
36576262 GAGCTGTAAA
* * *
36576272 CGGGAAGCTCGTCCGAGCTGAATAAT
1 CGGGAAGCTCATCAGAGCTAAATAAT
36576298 -GGGAAGCTCATGCA-AGCTAAAT-AT
1 CGGGAAGCTCAT-CAGAGCTAAATAAT
*
36576322 CGGGAAGCTCATAAGAGCT
1 CGGGAAGCTCATCAGAGCT
36576341 GTGGTGTGTC
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
24 3 0.08
25 32 0.89
26 1 0.03
ACGTcount: A:0.32, C:0.20, G:0.29, T:0.19
Consensus pattern (26 bp):
CGGGAAGCTCATCAGAGCTAAATAAT
Found at i:36582648 original size:57 final size:57
Alignment explanation
Indices: 36582539--36582655 Score: 137
Period size: 57 Copynumber: 2.1 Consensus size: 57
36582529 TTAATTAATC
* * * * *
36582539 TAAACCCTAAATCCCTAACCCCTATCCCTTAAACCCTGAATCATAAAACATAAACCA
1 TAAAACCTAAACCCCTAACCCCTAACCCTTAAACCCTCAACCATAAAACATAAACCA
* * * *
36582596 TAAAACCTAAACCCCTAACCCTTAACCCTTAAACCC-CAACCTTTAAACCATAATCCA
1 TAAAACCTAAACCCCTAACCCCTAACCCTTAAACCCTCAACC-ATAAAACATAAACCA
36582653 TAA
1 TAA
36582656 TCCATAATCC
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
56 3 0.06
57 47 0.94
ACGTcount: A:0.42, C:0.36, G:0.01, T:0.21
Consensus pattern (57 bp):
TAAAACCTAAACCCCTAACCCCTAACCCTTAAACCCTCAACCATAAAACATAAACCA
Found at i:36582655 original size:7 final size:7
Alignment explanation
Indices: 36582643--36582684 Score: 57
Period size: 7 Copynumber: 5.9 Consensus size: 7
36582633 AACCTTTAAA
36582643 CCATAAT
1 CCATAAT
36582650 CCATAAT
1 CCATAAT
36582657 CCATAAT
1 CCATAAT
* *
36582664 CCCTAAAC
1 CCAT-AAT
36582672 CCATAAT
1 CCATAAT
36582679 CCATAA
1 CCATAA
36582685 ACCTTAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
7 25 0.83
8 5 0.17
ACGTcount: A:0.43, C:0.33, G:0.00, T:0.24
Consensus pattern (7 bp):
CCATAAT
Found at i:36582692 original size:22 final size:22
Alignment explanation
Indices: 36582650--36582692 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
36582640 AAACCATAAT
*
36582650 CCATAATCCATAATCCCTAAAC
1 CCATAATCCATAAACCCTAAAC
*
36582672 CCATAATCCATAAACCTTAAA
1 CCATAATCCATAAACCCTAAA
36582693 ATAGTAACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.33, G:0.00, T:0.23
Consensus pattern (22 bp):
CCATAATCCATAAACCCTAAAC
Found at i:36590876 original size:20 final size:23
Alignment explanation
Indices: 36590839--36590880 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 23
36590829 AAAAAATCAA
36590839 AAAAAAAGAGAAGAAGAAATTTG
1 AAAAAAAGAGAAGAAGAAATTTG
36590862 AAAAAAA-A-AAG-AGAAATTT
1 AAAAAAAGAGAAGAAGAAATTT
36590881 TGGAAAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.42
21 3 0.16
22 1 0.05
23 7 0.37
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.14
Consensus pattern (23 bp):
AAAAAAAGAGAAGAAGAAATTTG
Found at i:36592247 original size:37 final size:37
Alignment explanation
Indices: 36592188--36592333 Score: 247
Period size: 37 Copynumber: 3.9 Consensus size: 37
36592178 AGCTCAGACG
* * *
36592188 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
36592225 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
36592262 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
36592299 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
36592334 ATATATTTCT
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:36592602 original size:47 final size:47
Alignment explanation
Indices: 36592544--36592885 Score: 441
Period size: 47 Copynumber: 7.1 Consensus size: 47
36592534 ACACGTTTCG
* *
36592544 CATTAGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
36592591 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
36592638 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
36592685 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ATATATGCATGTTCACATTCATCA
* * **
36592738 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATTG
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* **
36592785 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT--CAC--ATATATGCATGTTCACATTCATCA
* * *
36592836 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
36592883 CAT
1 CAT
36592886 AAAATCCTAA
Statistics
Matches: 256, Mismatches: 29, Indels: 20
0.84 0.10 0.07
Matches are distributed among these distances:
47 169 0.66
49 7 0.03
51 38 0.15
53 42 0.16
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:36592740 original size:147 final size:145
Alignment explanation
Indices: 36592544--36592863 Score: 459
Period size: 147 Copynumber: 2.2 Consensus size: 145
36592534 ACACGTTTCG
* *
36592544 CATTAGCCATTCGGCCTTATCA-C--ATATATTCATGTTCACATTCATCACATTGGCCATTCGGC
1 CATTGGCCATTCGGCCTTATCACCATATATATTCAGGTTCACATTCATCACATTGGCCATTCGGC
* * * *
36592606 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
66 CTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACAT
36592671 -GTTCACATTCATCA
131 GGTTCACATTCATCA
36592685 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCATTC
1 CATTGGCCATTCGGCCTTATCAC-CATATATAT-T-CAGGTTCACATTCATCACATTGGCCATTC
** *
36592750 GGCCTTATCACACATACGCATGTTCACATTCATTGCATTGGCCATTCGGCCTTATCACACATATA
63 GGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACA
*
36592815 TATACGGGTTCACATTCATCA
128 CAT---GGTTCACATTCATCA
36592836 CATTGGCCATTCGGCCTTATCACACATA
1 CATTGGCCATTCGGCCTTATCAC-CATA
36592864 CGCATGTTCA
Statistics
Matches: 158, Mismatches: 11, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
141 21 0.13
143 1 0.01
145 6 0.04
146 1 0.01
147 88 0.56
151 41 0.26
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.33
Consensus pattern (145 bp):
CATTGGCCATTCGGCCTTATCACCATATATATTCAGGTTCACATTCATCACATTGGCCATTCGGC
CTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACAT
GGTTCACATTCATCA
Found at i:36592755 original size:100 final size:98
Alignment explanation
Indices: 36592544--36592885 Score: 530
Period size: 100 Copynumber: 3.5 Consensus size: 98
36592534 ACACGTTTCG
* * **
36592544 CATTAGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * *
36592609 AT--C-T-CATATATGCATGTTCACATTCATCA
66 ATCACATATATATATACAGGTTCACATTCATCA
36592638 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
36592703 ATCACGCATATATATATACAGGTTCACATTCATCA
66 ATCA--CATATATATATACAGGTTCACATTCATCA
**
36592738 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATTGCATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
36592803 ATCACACATATATATACGGGTTCACATTCATCA
66 ATCACATATATATATACAGGTTCACATTCATCA
*
36592836 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
36592886 AAAATCCTAA
Statistics
Matches: 228, Mismatches: 14, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
94 63 0.28
98 75 0.33
99 1 0.00
100 89 0.39
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.32
Consensus pattern (98 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACATATATATATACAGGTTCACATTCATCA
Found at i:36595029 original size:85 final size:85
Alignment explanation
Indices: 36594900--36595078 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
36594890 TATTTTATTG
*
36594900 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACAGGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACAGGTTTT
36594965 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
*
36594985 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACAGGTTTT
36595050 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
36595070 CCCATGCTC
1 CCCATGCTC
36595079 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.26, C:0.28, G:0.09, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACAGGTTTT
TAGCCATAACATCTTGTCCA
Found at i:36595957 original size:14 final size:15
Alignment explanation
Indices: 36595918--36595960 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
36595908 AGAAAAGAAC
36595918 AAAGAAAATGAAAACG
1 AAAG-AAATGAAAACG
36595934 AAAGAAATGAAAA-G
1 AAAGAAATGAAAACG
36595948 AAA-AATATGAAAA
1 AAAGAA-ATGAAAA
36595961 TGAGATTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 2 0.08
14 11 0.42
15 9 0.35
16 4 0.15
ACGTcount: A:0.72, C:0.02, G:0.16, T:0.09
Consensus pattern (15 bp):
AAAGAAATGAAAACG
Found at i:36596010 original size:12 final size:12
Alignment explanation
Indices: 36595993--36596067 Score: 57
Period size: 12 Copynumber: 6.3 Consensus size: 12
36595983 AGTGAAAAGA
36595993 AAAAAGAGATTG
1 AAAAAGAGATTG
36596005 AAAAAGAGATTG
1 AAAAAGAGATTG
*
36596017 --AAAGAGA-AG
1 AAAAAGAGATTG
* *
36596026 AAAAGAAAGAGTGG
1 AAAA-AGAGA-TTG
*
36596040 AAAAAGAAATTG
1 AAAAAGAGATTG
* *
36596052 AAAGAGAGCTTG
1 AAAAAGAGATTG
36596064 AAAA
1 AAAA
36596068 GAAATCGAGT
Statistics
Matches: 48, Mismatches: 10, Indels: 10
0.71 0.15 0.15
Matches are distributed among these distances:
9 1 0.02
10 7 0.15
11 2 0.04
12 30 0.62
13 3 0.06
14 5 0.10
ACGTcount: A:0.60, C:0.01, G:0.27, T:0.12
Consensus pattern (12 bp):
AAAAAGAGATTG
Found at i:36596043 original size:35 final size:31
Alignment explanation
Indices: 36595976--36596058 Score: 96
Period size: 35 Copynumber: 2.6 Consensus size: 31
36595966 TTTCAAAAAC
* *
36595976 AAAAGAGAGTGAAA-AGAAAAAAGAGATTGA
1 AAAAGAGATTGAAAGAGAAAAAAGAGATGGA
36596006 AAAAGAGATTGAAAGAGAAGAAAAGAAAGAGTGGA
1 AAAAGAGATTGAAAGAGAA-AAAAG--AGA-TGGA
*
36596041 AAAAGAAATTGAAAGAGA
1 AAAAGAGATTGAAAGAGA
36596059 GCTTGAAAAG
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
30 13 0.29
31 4 0.09
32 5 0.11
34 3 0.07
35 20 0.44
ACGTcount: A:0.63, C:0.00, G:0.28, T:0.10
Consensus pattern (31 bp):
AAAAGAGATTGAAAGAGAAAAAAGAGATGGA
Found at i:36605392 original size:24 final size:24
Alignment explanation
Indices: 36605365--36605416 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
36605355 AAAAACAAAA
*
36605365 TAAAAAAATAT-ATTTATCAAAGTT
1 TAAAAAAATATGA-ATATCAAAGTT
*
36605389 T-AAAAAATTTGAATATCAAAGTT
1 TAAAAAAATATGAATATCAAAGTT
36605412 TAAAA
1 TAAAA
36605417 GAAAAAAAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
23 19 0.79
24 5 0.21
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.35
Consensus pattern (24 bp):
TAAAAAAATATGAATATCAAAGTT
Found at i:36606326 original size:20 final size:20
Alignment explanation
Indices: 36606280--36606326 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
36606270 AGCTTGTTTC
*
36606280 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* * *
36606300 CAACTCATTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
36606320 CAGCTCA
1 CAGCTCA
36606327 ATCTTAACCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:36608996 original size:48 final size:47
Alignment explanation
Indices: 36608917--36609022 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 47
36608907 GAGTGTCATG
*
36608917 GAAAAAGAAATTGAGATTGAAAAAGGATGTGA-AAAAGAGAAAGAAATC
1 GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAA-AGAAA-AAATC
* *
36608965 GAAAAAGAAATTGAGATTGAACAAAAG-TGTGAGGAAAAAGAGAAAATT
1 GAAAAAGAAATTGAGATTGAA-AAAAGATGTGA-GAAAAAGAAAAAATC
36609013 GAAAAAGAAA
1 GAAAAAGAAA
36609023 GAAAAGACAA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.59, C:0.02, G:0.25, T:0.14
Consensus pattern (47 bp):
GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAAAGAAAAAATC
Found at i:36620185 original size:479 final size:482
Alignment explanation
Indices: 36619272--36620225 Score: 1257
Period size: 479 Copynumber: 2.0 Consensus size: 482
36619262 TTCAATCTTT
*
36619272 TAATTTTCTGCTTGTGTCGATTTCATTATCTAACTTGTTTAAACTCTCTTGTTGCGTTTCCAGCC
1 TAATTTTCTGCTTGTGTCGATTTCATTAACTAACTTGTTTAAACTCTCTTGTTGCGTTTCCAGCC
* *
36619337 CCGTTCAACCTTCAAGAATTTGTTCGGCATCAACCTTGGACAACAAGAAACGTTTTGCTTTCACA
66 CCG-TCAACCTTCAAGAATTTGTTCGGCACCAACCTTGGACAACAAGAAACGTTTTGCATTCACA
* * ** * ***
36619402 AAACCCCTCTTTATTGCCGTCCGAACCCTAGATCTTGTTGATTTCGTGGTCTACTGAGTTTTTTT
130 AAACCCCTCTTTATTGCCGCCCAAACCCTAGATCTAATTAATTTCGT-GTCTACTGAGTTTGAGT
* * *
36619467 TTCGAAATTAACTTGTTGTTTTGTGTTCTTCTTTTCAGACTCGGCTGTTTGGAACCTATCTTGAA
194 TTCGAAATTAACTTGCTGTTTTGTGTTATTCTTTTCAGACTCGGCTGTTGGGAACCTATCTTGAA
*
36619532 TTCAATTCCGTGTTCTTGGCTTCCAAGAATAGATATTCACAAGTGTTTTTGGTTTCTTGGCTGAT
259 TTCAATTCCATGTTCTTGGCTTCCAAGAATAGATATTCACAAGTGTTTTTGGTTTCTTGGCTGAT
* *
36619597 CCTTTATTGTTTTGGGGTTTTTGTTTCAGATTTGGAATTTTAAGATTTACTTGTTCTCATTCGTT
324 CCTTTATTGTTTTGGGGTTTTTGTTTCAGATCTGAAATTTTAAGATTTACTTGTTCTCATTCGTT
* * **
36619662 TCAGATCTAAGCGTCTAAAGCTTTCGTAGGATTTTTTTCGTGACTTGACAACTCAATCTTGGTCC
389 TCAGATCAAAGCGTCTAAAGCTTTCATAGGATTTTTCCCGTGACTTGACAACTCAATCTTGGTCC
36619727 ACACGCAACCCTCTATCATTCATTCTTCC
454 ACACGCAACCCTCTATCATTCATTCTTCC
* *
36619756 TAATTTTCTTCTTGTGTCGATTTCATTAACTAACTTGTTTAAACTTTCTTGTTGCGTTTCCAGCA
1 TAATTTTCTGCTTGTGTCGATTTCATTAACTAACTTGTTTAAACTCTCTTGTTGCGTTTCCAGC-
* * *
36619821 CTC-TCAACCTTCAAGAATTTGTTCGGCACCATCCTTGGTCAACAAGAAACGTTTTTG-ATTCAC
65 CCCGTCAACCTTCAAGAATTTGTTCGGCACCAACCTTGGACAACAAGAAACG-TTTTGCATTCAC
** *
36619884 -AAATTCCTCTTTTCTTGCCGCCCAAACCCTAGATCTAATTCAATTT-GAT-TCTA-TGA-TCTG
129 AAAACCCCTC-TTTATTGCCGCCCAAACCCTAGATCTAATT-AATTTCG-TGTCTACTGAGT-T-
* * * * ** *
36619944 CTGAGTTT-G-ATTTGA-TT-CTGTTTTGTGTTATTCTTTTTAGATTCGGCTGTTGGGAGTCTCT
189 -TGAGTTTCGAAATTAACTTGCTGTTTTGTGTTATTCTTTTCAGACTCGGCTGTTGGGAACCTAT
* * *
36620005 CTTGAATTCAATTTCATGTTCTTGGCTTCCAAGAATAGCTATTCACAAGTTTTTTTGGTTTCTTG
253 CTTGAATTCAATTCCATGTTCTTGGCTTCCAAGAATAGATATTCACAAGTGTTTTTGGTTTCTTG
* * * * * *
36620070 GCTGTTTCTTTATTGTTTTGGGGTTTTTGTTTTAGATCTGAAATTTTAAGATTTATTTTTTTCTG
318 GCTGATCCTTTATTGTTTTGGGGTTTTTGTTTCAGATCTGAAATTTTAAGATTTA-CTTGTTCTC
* * *
36620135 TTTCGTTTCAGATCAAAGTGTCTAAAGCTTTCATAGGA-TTTTCCCGTGACTTGACAACTCGATC
382 ATTCGTTTCAGATCAAAGCGTCTAAAGCTTTCATAGGATTTTTCCCGTGACTTGACAACTCAATC
*** *
36620199 TTGGTCCGTGCGCAACTCTCTATCATT
447 TTGGTCCACACGCAACCCTCTATCATT
36620226 TGGTATCAGA
Statistics
Matches: 409, Mismatches: 52, Indels: 23
0.85 0.11 0.05
Matches are distributed among these distances:
479 193 0.47
480 43 0.11
481 8 0.02
482 12 0.03
483 80 0.20
484 71 0.17
485 2 0.00
ACGTcount: A:0.20, C:0.20, G:0.16, T:0.43
Consensus pattern (482 bp):
TAATTTTCTGCTTGTGTCGATTTCATTAACTAACTTGTTTAAACTCTCTTGTTGCGTTTCCAGCC
CCGTCAACCTTCAAGAATTTGTTCGGCACCAACCTTGGACAACAAGAAACGTTTTGCATTCACAA
AACCCCTCTTTATTGCCGCCCAAACCCTAGATCTAATTAATTTCGTGTCTACTGAGTTTGAGTTT
CGAAATTAACTTGCTGTTTTGTGTTATTCTTTTCAGACTCGGCTGTTGGGAACCTATCTTGAATT
CAATTCCATGTTCTTGGCTTCCAAGAATAGATATTCACAAGTGTTTTTGGTTTCTTGGCTGATCC
TTTATTGTTTTGGGGTTTTTGTTTCAGATCTGAAATTTTAAGATTTACTTGTTCTCATTCGTTTC
AGATCAAAGCGTCTAAAGCTTTCATAGGATTTTTCCCGTGACTTGACAACTCAATCTTGGTCCAC
ACGCAACCCTCTATCATTCATTCTTCC
Found at i:36634153 original size:79 final size:81
Alignment explanation
Indices: 36633985--36634169 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 81
36633975 GCTACTCGTT
*
36633985 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
* *
36634049 GATTTAGTAACTCGCA
66 GATTAAGTAACTAGCA
* * **
36634065 CAAATGCCTTC-GGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
36634127 GGA-TAAGGTCACTTAGCA
65 AGATTAA-GTAAC-TAGCA
36634145 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36634170 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
78 5 0.06
79 51 0.57
80 34 0.38
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
GATTAAGTAACTAGCA
Found at i:36634169 original size:40 final size:40
Alignment explanation
Indices: 36633985--36634169 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
36633975 GCTACTCGTT
*
36633985 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTA-AGTAACTCGCA
* * *
36634025 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAAGTAACTCGCA
* *
36634065 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAAGTAACTCGCA
* * * *
36634104 CCAATGCCTTC-GGATCTTAGTCCGGA-TAAGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTAA-GTAAC-TCGCA
36634145 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36634170 CATCATTCAA
Statistics
Matches: 127, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
39 42 0.33
40 73 0.57
41 12 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAAGTAACTCGCA
Found at i:36642323 original size:79 final size:82
Alignment explanation
Indices: 36642212--36642396 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
36642202 GCTACTCGTT
* *
36642212 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
36642275 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
36642292 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
36642355 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
36642372 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36642397 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:36642396 original size:40 final size:40
Alignment explanation
Indices: 36642193--36642396 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
36642183 CGGAATTTAA
** *
36642193 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36642233 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
36642273 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36642312 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
36642352 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
36642392 CCGGA
1 CCGGA
36642397 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:36646525 original size:20 final size:20
Alignment explanation
Indices: 36646469--36646512 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
36646459 TTGCTAACAG
*
36646469 AGGCACCGAAGTGCAATTAC
1 AGGCATCGAAGTGCAATTAC
*
36646489 AGGCATCGAAGTGCAATTAG
1 AGGCATCGAAGTGCAATTAC
36646509 AGGC
1 AGGC
36646513 GTGGTAGTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.34, C:0.20, G:0.30, T:0.16
Consensus pattern (20 bp):
AGGCATCGAAGTGCAATTAC
Found at i:36649066 original size:3 final size:3
Alignment explanation
Indices: 36649058--36649172 Score: 67
Period size: 3 Copynumber: 38.3 Consensus size: 3
36649048 TAATTATTGA
* * * *
36649058 TAT TAT TAT CAT TGAT TAA TAT TAT TAT TAC TAT TA- TAGT T-G TAT
1 TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT
* * * * * *
36649103 TAT TACT TAC TAC CAT GAT TAC TAT TAT CT-T TAT TCT T-T TAT TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT
*
36649148 TAT TAT TAT TAT TAA TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
36649173 TTTCTTTTTT
Statistics
Matches: 86, Mismatches: 18, Indels: 16
0.72 0.15 0.13
Matches are distributed among these distances:
2 6 0.07
3 72 0.84
4 8 0.09
ACGTcount: A:0.31, C:0.08, G:0.03, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:36658972 original size:29 final size:29
Alignment explanation
Indices: 36658913--36658973 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
36658903 TGTATAAGTG
* *
36658913 AGCCTTTATGGCGATCTTTGTTCAAAGGA
1 AGCCTTTATGGCGATCTTTCTTCAAAAGA
36658942 AGCCTTTATGGCGATCTTTCTT-AAATAGA
1 AGCCTTTATGGCGATCTTTCTTCAAA-AGA
36658971 AGC
1 AGC
36658974 TTTTGTGGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 3 0.10
29 26 0.90
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.34
Consensus pattern (29 bp):
AGCCTTTATGGCGATCTTTCTTCAAAAGA
Found at i:36659045 original size:29 final size:28
Alignment explanation
Indices: 36658975--36659080 Score: 83
Period size: 29 Copynumber: 3.8 Consensus size: 28
36658965 AATAGAAGCT
*
36658975 TTTGTGG-TGATCACTGTTTAAA-GGATGC
1 TTTGTGGCT-ATCTCTG-TTAAATGGATGC
*
36659003 ATTTGTGGCGATCTCTGTTAAATGGATGTC
1 -TTTGTGGCTATCTCTGTTAAATGGATG-C
* * **
36659033 TTTGTGGCTATCTCAGCTAAATAAATGC
1 TTTGTGGCTATCTCTGTTAAATGGATGC
**
36659061 TTTGTGGAAAT-TCTGTTAAA
1 TTTGTGGCTATCTCTGTTAAA
36659081 ATAACACCTT
Statistics
Matches: 63, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
27 7 0.11
28 15 0.24
29 40 0.63
30 1 0.02
ACGTcount: A:0.25, C:0.12, G:0.24, T:0.40
Consensus pattern (28 bp):
TTTGTGGCTATCTCTGTTAAATGGATGC
Found at i:36664418 original size:71 final size:70
Alignment explanation
Indices: 36664281--36664425 Score: 218
Period size: 71 Copynumber: 2.1 Consensus size: 70
36664271 AAAGTTGGTT
* * *
36664281 ACAATCGAGAATTGAGTTGATAAACTGCCAAACTAAAAAATCAAATGCTTAATTAAAGTAATTAA
1 ACAATCGAGAATCGAGTTGATAAACTGCCAAACTAAAAAATCAAATGCTGAATTAAAATAATTAA
36664346 CATCA
66 CATCA
* * *
36664351 ACAATCGATAATCGAGTTGATAAATTGTCAAACTAAAAAAATCAAATGCTGAATTAAAATAATTA
1 ACAATCGAGAATCGAGTTGATAAACTGCCAAACT-AAAAAATCAAATGCTGAATTAAAATAATTA
*
36664416 ACATGA
65 ACATCA
36664422 ACAA
1 ACAA
36664426 GAAATAAAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
70 30 0.45
71 37 0.55
ACGTcount: A:0.50, C:0.13, G:0.11, T:0.26
Consensus pattern (70 bp):
ACAATCGAGAATCGAGTTGATAAACTGCCAAACTAAAAAATCAAATGCTGAATTAAAATAATTAA
CATCA
Found at i:36665456 original size:6 final size:6
Alignment explanation
Indices: 36665447--36665505 Score: 73
Period size: 6 Copynumber: 9.7 Consensus size: 6
36665437 ATCAAAAAAT
* * * *
36665447 AAAATA AAAATA AAAAACA AAAACA AAAACA CAAACA CAAACA AAAACA
1 AAAACA AAAACA A-AAACA AAAACA AAAACA AAAACA AAAACA AAAACA
36665496 AAAACA AAAA
1 AAAACA AAAA
36665506 TATAAAACTA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
6 44 0.90
7 5 0.10
ACGTcount: A:0.81, C:0.15, G:0.00, T:0.03
Consensus pattern (6 bp):
AAAACA
Found at i:36665517 original size:6 final size:6
Alignment explanation
Indices: 36665459--36665505 Score: 76
Period size: 6 Copynumber: 7.8 Consensus size: 6
36665449 AATAAAAATA
* *
36665459 AAAAAC AAAAAC AAAAAC ACAAAC ACAAAC AAAAAC AAAAAC AAAAA
1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAA
36665506 TATAAAACTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.81, C:0.19, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:36672507 original size:26 final size:26
Alignment explanation
Indices: 36672465--36672516 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
36672455 ATATAATTTC
36672465 CAAATCATGTATCTATA-CATCATGTA
1 CAAATCATGTATCTATATC-TCATGTA
*
36672491 CAAATCAT-TTTCATATATCTCATGTA
1 CAAATCATGTATC-TATATCTCATGTA
36672517 AATACCTGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 3 0.13
26 19 0.83
27 1 0.04
ACGTcount: A:0.37, C:0.19, G:0.06, T:0.38
Consensus pattern (26 bp):
CAAATCATGTATCTATATCTCATGTA
Found at i:36672707 original size:25 final size:26
Alignment explanation
Indices: 36672674--36672734 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 26
36672664 ACGAGCTGTA
36672674 AACGATAAGCTTC-TCCAAGCTGAAT
1 AACGATAAGCTTCTTCCAAGCTGAAT
* *
36672699 AACGCTAAGC-TCTTCCGAGCTGAAT
1 AACGATAAGCTTCTTCCAAGCTGAAT
* *
36672724 AAAGGTAAGCT
1 AACGATAAGCT
36672735 CTTTTGAGCT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 2 0.07
25 28 0.93
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (26 bp):
AACGATAAGCTTCTTCCAAGCTGAAT
Found at i:36672735 original size:25 final size:25
Alignment explanation
Indices: 36672691--36672769 Score: 97
Period size: 25 Copynumber: 3.2 Consensus size: 25
36672681 AGCTTCTCCA
* * *
36672691 AGCTGAATAACGCTAAGCTCTTCCG
1 AGCTGAATAAAGGTAAGCTCTTCTG
*
36672716 AGCTGAATAAAGGTAAGCTCTTTTG
1 AGCTGAATAAAGGTAAGCTCTTCTG
*
36672741 AGCTGAACAATA-GTAAGCTCTTCTG
1 AGCTGAATAA-AGGTAAGCTCTTCTG
36672766 AGCT
1 AGCT
36672770 AAGTATCGGT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 46 0.98
26 1 0.02
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (25 bp):
AGCTGAATAAAGGTAAGCTCTTCTG
Found at i:36672781 original size:25 final size:24
Alignment explanation
Indices: 36672704--36672785 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 24
36672694 TGAATAACGC
* *
36672704 TAAGCTCTTCCGAGCTGAATAAAGG
1 TAAGCTCTTCTGAGCTGAAT-ATGG
* * *
36672729 TAAGCTCTTTTGAGCTGAACAATAG
1 TAAGCTCTTCTGAGCTGAA-TATGG
36672754 TAAGCTCTTCTGAGCT-AAGTATCGG
1 TAAGCTCTTCTGAGCTGAA-TAT-GG
36672779 TAAGCTC
1 TAAGCTC
36672786 ATAAGAGCTG
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
24 4 0.09
25 42 0.91
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (24 bp):
TAAGCTCTTCTGAGCTGAATATGG
Found at i:36677082 original size:19 final size:19
Alignment explanation
Indices: 36677058--36677102 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
36677048 ACAGTACCTA
36677058 AACAGTAATCAGTAACGAG-
1 AACAGTAATCAGTAAC-AGT
*
36677077 AACAGTAATTAGTAACAGT
1 AACAGTAATCAGTAACAGT
36677096 AACAGTA
1 AACAGTA
36677103 TTGAACACAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 2 0.08
19 22 0.92
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (19 bp):
AACAGTAATCAGTAACAGT
Found at i:36677137 original size:45 final size:45
Alignment explanation
Indices: 36677087--36677187 Score: 136
Period size: 45 Copynumber: 2.2 Consensus size: 45
36677077 AACAGTAATT
*
36677087 AGTAACAGTAACAGTAT-TGAACACACAAAGTG-CTGAATCT-GTAAC
1 AGTAACAGTAACACTATCTG-ACACACAAAGTGTC-GAAT-TGGTAAC
*
36677132 AGTAACGGTAACACTATCTGACACACAAAGTGTCGAATTGGTAAC
1 AGTAACAGTAACACTATCTGACACACAAAGTGTCGAATTGGTAAC
36677177 AGTAACAGTAA
1 AGTAACAGTAA
36677188 TCGGCGCATA
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
44 1 0.02
45 46 0.92
46 3 0.06
ACGTcount: A:0.42, C:0.18, G:0.19, T:0.22
Consensus pattern (45 bp):
AGTAACAGTAACACTATCTGACACACAAAGTGTCGAATTGGTAAC
Found at i:36678152 original size:16 final size:17
Alignment explanation
Indices: 36678126--36678158 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
36678116 TTAAACCCTA
36678126 CTTTTTCCTTTCTTTCT
1 CTTTTTCCTTTCTTTCT
36678143 CTTTTT-CTTTCTTTCT
1 CTTTTTCCTTTCTTTCT
36678159 TTCTCCCCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (17 bp):
CTTTTTCCTTTCTTTCT
Found at i:36678741 original size:35 final size:35
Alignment explanation
Indices: 36678687--36678765 Score: 101
Period size: 35 Copynumber: 2.3 Consensus size: 35
36678677 TATTTAATAC
* *
36678687 TATAATAT-CATTATAATTTAATTATCATAAATTCA
1 TATAATATAAATTATAATTTAAATATCATAAATT-A
*
36678722 TATAATATAAATTAT-ATTTAAATATCATTAATTA
1 TATAATATAAATTATAATTTAAATATCATAAATTA
36678756 TATAAT-TAAA
1 TATAATATAAA
36678766 ACACATAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
33 4 0.10
34 7 0.17
35 24 0.60
36 5 0.12
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (35 bp):
TATAATATAAATTATAATTTAAATATCATAAATTA
Found at i:36680470 original size:50 final size:50
Alignment explanation
Indices: 36680366--36680605 Score: 214
Period size: 50 Copynumber: 4.7 Consensus size: 50
36680356 TAAAGAGATA
*
36680366 CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGGTTATGAGAGGTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA-G--ATGAGAGGTC
* *
36680422 CCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATGAGAGGTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTC
** * * * * **
36680472 CCCCGTAAGACCATGTCTGGCACATGGCATGGGTACCGATATGAGAACTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTC
* * * * * * **
36680522 CCATGTAAGACCATATCTGGGATATGACATTGGCA--GTACAAGAAACATC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAGAGGTC
* *
36680571 CCATGTGAGACCATGTCTGGGACATGGCTTTGGCA
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCA
36680606 TGTTATTATC
Statistics
Matches: 152, Mismatches: 31, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
48 1 0.01
49 37 0.24
50 77 0.51
52 1 0.01
53 2 0.01
55 1 0.01
56 33 0.22
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (50 bp):
CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTC
Found at i:36687688 original size:49 final size:47
Alignment explanation
Indices: 36687628--36688591 Score: 1214
Period size: 47 Copynumber: 19.6 Consensus size: 47
36687618 GATAATTGTG
* *
36687628 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
36687675 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36687722 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* ** * **
36687771 ATGTGAAAGTGTGTGATGAATGTGA-AAGTGTATATATATGTGATAAGGCCTAATG-GCCGA
1 ATGTGAAAGTGTAT-AT--ATGTGATAAG-G----CCTA----AT--GGCC-GATGTGATGA
* * * *
36687831 TGTGATGAATGTGAAAGTGTATAAATGTGATAAGGCCTAATAGCTGATGTGATGA
1 -ATG-------TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
36687886 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36687933 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36687982 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36688031 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36688078 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36688127 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36688174 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36688221 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCC---T-----A----ATGGCCGATGTGATGA
36688280 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36688329 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36688376 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36688425 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36688472 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
36688519 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
*
36688566 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
36688592 TCCCGAAGGG
Statistics
Matches: 819, Mismatches: 49, Indels: 97
0.85 0.05 0.10
Matches are distributed among these distances:
46 2 0.00
47 445 0.54
48 4 0.00
49 261 0.32
50 8 0.01
53 1 0.00
54 7 0.01
55 6 0.01
57 2 0.00
58 3 0.00
59 27 0.03
60 7 0.01
61 25 0.03
65 7 0.01
66 3 0.00
67 1 0.00
68 10 0.01
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:36687736 original size:96 final size:94
Alignment explanation
Indices: 36687628--36688591 Score: 1239
Period size: 96 Copynumber: 9.8 Consensus size: 94
36687618 GATAATTGTG
* *
36687628 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
36687693 GTGATAAGGCCGAATGGCCAATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
*
36687722 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-A
** * * *
36687787 TGAATGTGA-AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
63 T--ATGTGATAAG-G----CCTA----AT--GGCC-GAT-G-TGATG-A
* * *
36687835 ATGAATGTGAAAGTGTATAAATGTGATAAGGCCTAATAGCTGATGTGATGAATGTGAAAGTGTAT
1 A----TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
36687900 ATATGTGATAAGGCCGAATGGCCAATGTGATGA
62 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
36687933 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
36687998 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
62 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36688031 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
36688096 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36688127 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
36688192 GTGATGAGGCCTAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
36688221 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGCCGATGTGATGAATGTGA
1 ATGTGAAAGTGTATATATGTGATAAGGCC---T-----A----ATGGCCGATGTGATGAATGTGA
36688286 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
54 AAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36688329 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
36688394 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36688425 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
36688490 GTGATGAGGCCTAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
36688519 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 ATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
36688583 TGTGATAAG
65 TGTGATAAG
36688592 TCCCGAAGGG
Statistics
Matches: 789, Mismatches: 37, Indels: 88
0.86 0.04 0.10
Matches are distributed among these distances:
93 2 0.00
94 179 0.23
96 357 0.45
97 3 0.00
98 49 0.06
99 11 0.01
100 2 0.00
101 3 0.00
102 5 0.01
103 1 0.00
104 2 0.00
105 1 0.00
106 26 0.03
107 2 0.00
108 65 0.08
109 4 0.01
110 3 0.00
111 1 0.00
112 11 0.01
113 4 0.01
114 2 0.00
115 46 0.06
117 10 0.01
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:36687787 original size:19 final size:19
Alignment explanation
Indices: 36687763--36687801 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
36687753 TAATGGCCGA
36687763 TGTGATGAATGTGAAAGTG
1 TGTGATGAATGTGAAAGTG
36687782 TGTGATGAATGTGAAAGTG
1 TGTGATGAATGTGAAAGTG
36687801 T
1 T
36687802 ATATATATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.36, T:0.33
Consensus pattern (19 bp):
TGTGATGAATGTGAAAGTG
Found at i:36687793 original size:115 final size:114
Alignment explanation
Indices: 36687667--36687897 Score: 392
Period size: 115 Copynumber: 2.0 Consensus size: 114
36687657 TAATGGCCGA
36687667 TGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 TGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
*
36687731 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 TGTATA-A-ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
* *
36687782 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
36687847 GTGTATAAATGTGATAAGGCCTAATAGCTGATGTGATGAATGTGAAAGTG
65 GTGTATAAATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
36687897 T
1 T
36687898 ATATATGTGA
Statistics
Matches: 110, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
115 60 0.55
116 1 0.01
117 49 0.45
ACGTcount: A:0.33, C:0.06, G:0.30, T:0.30
Consensus pattern (114 bp):
TGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
TGTATAAATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
Found at i:36688422 original size:298 final size:296
Alignment explanation
Indices: 36687782--36688565 Score: 1374
Period size: 298 Copynumber: 2.7 Consensus size: 296
36687772 TGTGAAAGTG
36687782 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* * *
36687847 GTGTATAAATGTGATAAGGCCTAATAGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
66 GTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAG
* *
36687912 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC--T-----A---A
131 GCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGATGGCCAAGTGA
36687967 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
194 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
36688032 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
259 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
36688070 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
36688135 GTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAG
66 GTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAG
36688200 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGA
131 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG-ATGGCCAA-GTGA
36688265 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
194 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
36688330 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
259 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
36688368 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
36688433 GTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAG
66 GTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAG
*
36688498 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTG
131 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG-GCCGA-TGGCCAA-GTG
36688562 ATGG
193 ATGG
36688566 ATGTGAAAGT
Statistics
Matches: 475, Mismatches: 7, Indels: 18
0.95 0.01 0.04
Matches are distributed among these distances:
286 18 0.04
288 157 0.33
289 1 0.00
294 1 0.00
297 3 0.01
298 295 0.62
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (296 bp):
TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
GTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAG
GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGATGGCCAAGTGATG
GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
TGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
Found at i:36693083 original size:49 final size:49
Alignment explanation
Indices: 36692899--36693084 Score: 178
Period size: 50 Copynumber: 3.8 Consensus size: 49
36692889 GGTAACGAGA
* * * * **
36692899 TCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CGACAAGAGAAC
** * * *
36692949 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CGACAAGAGAAC
* * *
36692999 TCCCATGTAAGACCATATCTGGGATATGACATTGGCA-GTACAAGA-AAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACG-ACAAGAGAAC
* *
36693047 ATCCCATGTGAGACCATGTCTGGGACATGGCTTTGGCA
1 -TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
36693085 TGTTATTATC
Statistics
Matches: 113, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
48 4 0.04
49 36 0.32
50 73 0.65
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (49 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACGACAAGAGAAC
Found at i:36704721 original size:41 final size:41
Alignment explanation
Indices: 36704676--36704820 Score: 238
Period size: 41 Copynumber: 3.5 Consensus size: 41
36704666 GACTTTAAGT
* *
36704676 CTAGCAGGGTAAGTGCCAGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
36704717 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
* *
36704758 CTAGCAGGCTAAGTGCCGGTGAT-TGGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGATCT-GAATCAGGTTATAAAC
36704799 CTAGCAGGCTAAGTGCCGGTGA
1 CTAGCAGGCTAAGTGCCGGTGA
36704821 ATATGTTAAA
Statistics
Matches: 99, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
40 1 0.01
41 98 0.99
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
Found at i:36710522 original size:29 final size:29
Alignment explanation
Indices: 36710454--36710536 Score: 94
Period size: 29 Copynumber: 2.8 Consensus size: 29
36710444 CAACAAGGAA
*
36710454 CAACCACAAATGCTTCCACATATAACAGGTT
1 CAACCACAAAGGC-T-CACATATAACAGGTT
** *
36710485 CTGCAACAAAGGCTCACATATAACAGGTT
1 CAACCACAAAGGCTCACATATAACAGGTT
* *
36710514 CAACCACAAAGACTAACATATAA
1 CAACCACAAAGGCTCACATATAA
36710537 TAGATTTAGT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
29 33 0.77
30 1 0.02
31 9 0.21
ACGTcount: A:0.43, C:0.27, G:0.11, T:0.19
Consensus pattern (29 bp):
CAACCACAAAGGCTCACATATAACAGGTT
Found at i:36710778 original size:54 final size:53
Alignment explanation
Indices: 36710718--36710868 Score: 196
Period size: 54 Copynumber: 2.8 Consensus size: 53
36710708 CCGTCCTTTC
*
36710718 CCTATATGATGTTATAGCTAATGGCTAGGCCTTACACTATATGGTCTTCATTT
1 CCTATATGATGTCATAGCTAATGGCTAGGCCTTACACTATATGGTCTTCATTT
* * * * * *
36710771 CCTTATATGACGCCGTAGCTAACGACTAGGACTTACACTATATGGTCTTCATTT
1 CC-TATATGATGTCATAGCTAATGGCTAGGCCTTACACTATATGGTCTTCATTT
* * *
36710825 CC-AGATGATGTCATAGCTAATGGCAAGGCATTACACTATATGGT
1 CCTATATGATGTCATAGCTAATGGCTAGGCCTTACACTATATGGT
36710869 GTTCGCTTGT
Statistics
Matches: 81, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
52 33 0.41
53 2 0.02
54 46 0.57
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.34
Consensus pattern (53 bp):
CCTATATGATGTCATAGCTAATGGCTAGGCCTTACACTATATGGTCTTCATTT
Found at i:36720835 original size:30 final size:30
Alignment explanation
Indices: 36720795--36720926 Score: 144
Period size: 30 Copynumber: 4.4 Consensus size: 30
36720785 TAGCTGAAGT
* *
36720795 CATCCGTTTTCATAATTCGAT-GGCTGTCAC
1 CATCCCTTTTCATAATTCGATAGTC-GTCAC
* ** *
36720825 CATCTCTTTTCATTGTT-GATTGTCGTCAC
1 CATCCCTTTTCATAATTCGATAGTCGTCAC
* *
36720854 CATCCCTTTTCATAATTTGATAGTCG-AAGC
1 CATCCCTTTTCATAATTCGATAGTCGTCA-C
36720884 CATCCCTTTTCATAATTCGATAGTCGTCAC
1 CATCCCTTTTCATAATTCGATAGTCGTCAC
*
36720914 CATCTCTTTTCAT
1 CATCCCTTTTCAT
36720927 TGTTGATTGT
Statistics
Matches: 85, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
29 23 0.27
30 61 0.72
31 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.12, T:0.41
Consensus pattern (30 bp):
CATCCCTTTTCATAATTCGATAGTCGTCAC
Found at i:36720888 original size:89 final size:90
Alignment explanation
Indices: 36720761--36721000 Score: 299
Period size: 89 Copynumber: 2.7 Consensus size: 90
36720751 TCGATAGCCA
* * * * * *
36720761 AAGCTATCCCTTTCCATATTTTGATAG-CTGAAGTCATCCGTTTTCATAATTCGATGGCTGTCAC
1 AAGCCATCCCTTTTCATAATTTGATAGTC-GAAGCCATCCCTTTTCATAATTCGATAGCTGTCAC
36720825 CATCTCTTTTCATTGTTGATTGTCGT-
65 CATCTCTTTTCATTGTTGATTGT-GTG
*
36720851 CA-CCATCCCTTTTCATAATTTGATAGTCGAAGCCATCCCTTTTCATAATTCGATAG-TCGTCAC
1 AAGCCATCCCTTTTCATAATTTGATAGTCGAAGCCATCCCTTTTCATAATTCGATAGCT-GTCAC
*
36720914 CATCTCTTTTCATTGTTGATTGTTTG
65 CATCTCTTTTCATTGTTGATTGTGTG
* * ** *
36720940 AAGCTATCCCTTTTCATAATTTGATAGTCGAAGCTATCTTTTTTTCATAATTTGATAGCTG
1 AAGCCATCCCTTTTCATAATTTGATAGTCGAAGCCATC-CCTTTTCATAATTCGATAGCTG
36721001 AAGCCATCCA
Statistics
Matches: 130, Mismatches: 14, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
88 2 0.02
89 75 0.58
90 35 0.27
91 17 0.13
92 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.42
Consensus pattern (90 bp):
AAGCCATCCCTTTTCATAATTTGATAGTCGAAGCCATCCCTTTTCATAATTCGATAGCTGTCACC
ATCTCTTTTCATTGTTGATTGTGTG
Found at i:36720943 original size:60 final size:58
Alignment explanation
Indices: 36720824--36721077 Score: 174
Period size: 60 Copynumber: 4.2 Consensus size: 58
36720814 ATGGCTGTCA
* ** *
36720824 CCATCTCTTTTCATTGTTGATTGTCGTCACCATCCCTTTTCATAATTTGATAGTCGAAG
1 CCATCCCTTTTCATAATTGATAGTCGTCACCATCCCTTTTCAT-ATTTGATAGTCGAAG
* * *
36720883 CCATCCCTTTTCATAATTCGATAGTCGTCACCATCTCTTTTCAT-TGTTGATTGTTTGAAG
1 CCATCCCTTTTCATAATT-GATAGTCGTCACCATCCCTTTTCATAT-TTGATAG-TCGAAG
* * * **
36720943 CTATCCCTTTTCATAATTTGATAGTCG-AAGCTATCTTTTTTTCATAATTTGATAG-CTGAAG
1 CCATCCCTTTTCATAA-TTGATAGTCGTCA-CCATC-CCTTTTCAT-ATTTGATAGTC-GAAG
* * * * * * * * *
36721004 CCATCCATTTCCATATTTTGATAGCCG-AAGCCATCCCTTTCCATATTTTGATAGCCAAAT
1 CCATCCCTTTTCATA-ATTGATAGTCGTCA-CCATCCCTTTTCATA-TTTGATAGTCGAAG
*
36721064 CCATCCATTTTCAT
1 CCATCCCTTTTCAT
36721078 TGGTCGATGA
Statistics
Matches: 158, Mismatches: 25, Indels: 23
0.77 0.12 0.11
Matches are distributed among these distances:
58 1 0.01
59 23 0.15
60 84 0.53
61 43 0.27
62 6 0.04
63 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.12, T:0.41
Consensus pattern (58 bp):
CCATCCCTTTTCATAATTGATAGTCGTCACCATCCCTTTTCATATTTGATAGTCGAAG
Found at i:36720973 original size:30 final size:30
Alignment explanation
Indices: 36720853--36721077 Score: 206
Period size: 30 Copynumber: 7.5 Consensus size: 30
36720843 ATTGTCGTCA
36720853 CCATCCCTTTTCATAATTTGATAGTCGAAG
1 CCATCCCTTTTCATAATTTGATAGTCGAAG
* *
36720883 CCATCCCTTTTCATAATTCGATAGTCGTCA-
1 CCATCCCTTTTCATAATTTGATAGTCG-AAG
* * *
36720913 CCATCTCTTTTCAT--TGTTGATTGTTTGAAG
1 CCATCCCTTTTCATAAT-TTGATAG-TCGAAG
*
36720943 CTATCCCTTTTCATAATTTGATAGTCGAAG
1 CCATCCCTTTTCATAATTTGATAGTCGAAG
* **
36720973 CTATCTTTTTTTCATAATTTGATAG-CTGAAG
1 CCATC-CCTTTTCATAATTTGATAGTC-GAAG
* * * *
36721004 CCATCCATTTCCATATTTTGATAGCCGAAG
1 CCATCCCTTTTCATAATTTGATAGTCGAAG
* * * * *
36721034 CCATCCCTTTCCATATTTTGATAGCCAAAT
1 CCATCCCTTTTCATAATTTGATAGTCGAAG
*
36721064 CCATCCATTTTCAT
1 CCATCCCTTTTCAT
36721078 TGGTCGATGA
Statistics
Matches: 163, Mismatches: 23, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
28 1 0.01
29 6 0.04
30 122 0.75
31 33 0.20
32 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.40
Consensus pattern (30 bp):
CCATCCCTTTTCATAATTTGATAGTCGAAG
Found at i:36728541 original size:30 final size:30
Alignment explanation
Indices: 36728497--36728555 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
36728487 CATTTTATAA
* * *
36728497 TTTGATATCCGAAGCTATCCCTTTCCATAT
1 TTTGATAGCCGAAGCCATCCATTTCCATAT
* *
36728527 TTTGATAGCTGAAGCCATCCATTTTCATA
1 TTTGATAGCCGAAGCCATCCATTTCCATA
36728556 ATTCAATGGT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.39
Consensus pattern (30 bp):
TTTGATAGCCGAAGCCATCCATTTCCATAT
Found at i:36728582 original size:30 final size:30
Alignment explanation
Indices: 36728541--36728710 Score: 157
Period size: 30 Copynumber: 5.7 Consensus size: 30
36728531 ATAGCTGAAG
*
36728541 CCATCCATTTTCATAATTCAATGGTCGTCA
1 CCATCCCTTTTCATAATTCAATGGTCGTCA
** *
36728571 CCATCCCTTTTCATTGTT-GATGGTCGTCA
1 CCATCCCTTTTCATAATTCAATGGTCGTCA
* *
36728600 CCATCCCTTTTCATAATTCGATGGCCGTCA
1 CCATCCCTTTTCATAATTCAATGGTCGTCA
* ** * *
36728630 CCATCTCTTTTCATTGTT-AATGGTCATTA
1 CCATCCCTTTTCATAATTCAATGGTCGTCA
* ** * *
36728659 CCATCCCTTTTCATGATTTGATAGTCG-AA
1 CCATCCCTTTTCATAATTCAATGGTCGTCA
*
36728688 GCCATCACTTTTCATAATTCAAT
1 -CCATCCCTTTTCATAATTCAAT
36728711 TTTTAAAGCT
Statistics
Matches: 112, Mismatches: 25, Indels: 6
0.78 0.17 0.04
Matches are distributed among these distances:
29 49 0.44
30 63 0.56
ACGTcount: A:0.22, C:0.26, G:0.12, T:0.39
Consensus pattern (30 bp):
CCATCCCTTTTCATAATTCAATGGTCGTCA
Found at i:36728602 original size:29 final size:29
Alignment explanation
Indices: 36728561--36728672 Score: 152
Period size: 29 Copynumber: 3.8 Consensus size: 29
36728551 TCATAATTCA
36728561 ATGGTCGTCACCATCCCTTTTCATTGTTG
1 ATGGTCGTCACCATCCCTTTTCATTGTTG
**
36728590 ATGGTCGTCACCATCCCTTTTCATAATTCG
1 ATGGTCGTCACCATCCCTTTTCATTGTT-G
* * *
36728620 ATGGCCGTCACCATCTCTTTTCATTGTTA
1 ATGGTCGTCACCATCCCTTTTCATTGTTG
* *
36728649 ATGGTCATTACCATCCCTTTTCAT
1 ATGGTCGTCACCATCCCTTTTCAT
36728673 GATTTGATAG
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
29 46 0.65
30 25 0.35
ACGTcount: A:0.18, C:0.29, G:0.13, T:0.40
Consensus pattern (29 bp):
ATGGTCGTCACCATCCCTTTTCATTGTTG
Found at i:36728604 original size:59 final size:59
Alignment explanation
Indices: 36728541--36728672 Score: 201
Period size: 59 Copynumber: 2.2 Consensus size: 59
36728531 ATAGCTGAAG
* * * *
36728541 CCATCCATTTTCATAATTCAATGGTCGTCACCATCCCTTTTCATTGTTGATGGTCGTCA
1 CCATCCCTTTTCATAATTCAATGGCCGTCACCATCCCTTTTCATTGTTAATGGTCATCA
* * *
36728600 CCATCCCTTTTCATAATTCGATGGCCGTCACCATCTCTTTTCATTGTTAATGGTCATTA
1 CCATCCCTTTTCATAATTCAATGGCCGTCACCATCCCTTTTCATTGTTAATGGTCATCA
36728659 CCATCCCTTTTCAT
1 CCATCCCTTTTCAT
36728673 GATTTGATAG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
59 66 1.00
ACGTcount: A:0.20, C:0.29, G:0.11, T:0.40
Consensus pattern (59 bp):
CCATCCCTTTTCATAATTCAATGGCCGTCACCATCCCTTTTCATTGTTAATGGTCATCA
Found at i:36728693 original size:59 final size:59
Alignment explanation
Indices: 36728541--36728702 Score: 173
Period size: 59 Copynumber: 2.7 Consensus size: 59
36728531 ATAGCTGAAG
* * * * * * * *
36728541 CCATCCATTTTCATAATTCAATGGTCGTCACCATCCCTTTTCATTGTTGATGGTCGTCA
1 CCATCCCTTTTCATAATTCGATAGCCGTAACCATCACTTTTCATTGTTAATGGTCATCA
* * * *
36728600 CCATCCCTTTTCATAATTCGATGGCCGTCACCATCTCTTTTCATTGTTAATGGTCATTA
1 CCATCCCTTTTCATAATTCGATAGCCGTAACCATCACTTTTCATTGTTAATGGTCATCA
* * *
36728659 CCATCCCTTTTCATGATTTGATAGTCG-AAGCCATCACTTTTCAT
1 CCATCCCTTTTCATAATTCGATAGCCGTAA-CCATCACTTTTCAT
36728703 AATTCAATTT
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
58 1 0.01
59 88 0.99
ACGTcount: A:0.21, C:0.27, G:0.12, T:0.40
Consensus pattern (59 bp):
CCATCCCTTTTCATAATTCGATAGCCGTAACCATCACTTTTCATTGTTAATGGTCATCA
Found at i:36728800 original size:30 final size:29
Alignment explanation
Indices: 36728715--36728849 Score: 90
Period size: 30 Copynumber: 4.4 Consensus size: 29
36728705 TTCAATTTTT
* * * *
36728715 AAAGCTATCCCTTTTCATAATTCGATAGTC
1 AAAGC-ATCCCTTTCCATATTTTGATAGCC
** * * *
36728745 AAAGTTGTCCCCTTCTCATAATTTGATAGCT
1 AAAG-CATCCCTTTC-CATATTTTGATAGCC
* *
36728776 AAAGCTATCCCTTTCCGTATTTTGATAGTCG
1 AAAGC-ATCCCTTTCCATATTTTGATAG-CC
* *
36728807 AAGGCATCCTTTTCCATATTTTGATAGCC
1 AAAGCATCCCTTTCCATATTTTGATAGCC
*
36728836 CAAGCCATCCCTTT
1 AAAG-CATCCCTTT
36728850 TCATTGGTCA
Statistics
Matches: 80, Mismatches: 20, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
29 3 0.04
30 49 0.61
31 28 0.35
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (29 bp):
AAAGCATCCCTTTCCATATTTTGATAGCC
Found at i:36732902 original size:27 final size:25
Alignment explanation
Indices: 36732872--36732926 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
36732862 CTCTTTTGAG
* *
36732872 TTAATAAATTCTCTTTGAGTTTTTATT
1 TTAAGAAATTATC-TTGAG-TTTTATT
*
36732899 TTAAGAATTTATCTTGAGTTTTATT
1 TTAAGAAATTATCTTGAGTTTTATT
36732924 TTA
1 TTA
36732927 GAAGAGTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 10 0.40
26 5 0.20
27 10 0.40
ACGTcount: A:0.27, C:0.05, G:0.09, T:0.58
Consensus pattern (25 bp):
TTAAGAAATTATCTTGAGTTTTATT
Found at i:36733153 original size:17 final size:17
Alignment explanation
Indices: 36733093--36733153 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
36733083 CTTTTCCATA
* * *
36733093 TATTTATTTTTTTCTCT
1 TATTTATTTTTCTATTT
36733110 TATTTATTTTTCTAATCATT
1 TATTTATTTTTCT-AT--TT
*
36733130 GATTTATTTTTCTATTT
1 TATTTATTTTTCTATTT
36733147 TATTTAT
1 TATTTAT
36733154 ATTAGTTATT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
17 20 0.56
18 1 0.03
19 2 0.06
20 13 0.36
ACGTcount: A:0.20, C:0.08, G:0.02, T:0.70
Consensus pattern (17 bp):
TATTTATTTTTCTATTT
Found at i:36738806 original size:25 final size:24
Alignment explanation
Indices: 36738777--36738860 Score: 71
Period size: 25 Copynumber: 3.4 Consensus size: 24
36738767 GAGTTTGTCT
36738777 CAATCTAAAGTTTCTATCTTTTTCA
1 CAATCTAAAGTTTCTAT-TTTTTCA
* * **
36738802 CAATCTATAGCTTCCTATAGTTTCA
1 CAATCTAAAG-TTTCTATTTTTTCA
* * *
36738827 CAATTTATAGTTTCTGTTGTTTTCA
1 CAATCTAAAGTTTCTATT-TTTTCA
36738852 C-ATCTAAAG
1 CAATCTAAAG
36738861 ATCACTTACC
Statistics
Matches: 46, Mismatches: 11, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
24 11 0.24
25 29 0.63
26 6 0.13
ACGTcount: A:0.27, C:0.19, G:0.08, T:0.45
Consensus pattern (24 bp):
CAATCTAAAGTTTCTATTTTTTCA
Found at i:36741168 original size:21 final size:19
Alignment explanation
Indices: 36741137--36741178 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 19
36741127 TTGGAAAACT
36741137 AGAAAGAAAAATAGAGAGAA
1 AGAAAGAAAAATAGA-AGAA
36741157 AGAAATGAAAAATAGAAGAA
1 AGAAA-GAAAAATAGAAGAA
36741177 AG
1 AG
36741179 TGAGAGGGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.69, C:0.00, G:0.24, T:0.07
Consensus pattern (19 bp):
AGAAAGAAAAATAGAAGAA
Done.