Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 118 of 240
Found at i:36743303 original size:33 final size:33
Alignment explanation
Indices: 36743253--36743317 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 33
36743243 CATGCAATAG
* *
36743253 CAGTCTGGGCTTGAGCCCTATTCAGTAACAGTA
1 CAGTCTGGGCTTGAGCCCAATACAGTAACAGTA
* *
36743286 CAGTGTGGGCCTT-AGCCCAATACAGTAGCAGT
1 CAGTCTGGG-CTTGAGCCCAATACAGTAACAGT
36743318 GTGAGCCTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 24 0.89
34 3 0.11
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (33 bp):
CAGTCTGGGCTTGAGCCCAATACAGTAACAGTA
Found at i:36744425 original size:12 final size:12
Alignment explanation
Indices: 36744400--36744438 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
36744390 ACTCACTTCT
* *
36744400 TTACTTACTCAC
1 TTACTTGCTTAC
*
36744412 TTACTTGTTTAC
1 TTACTTGCTTAC
36744424 TTACTTGCTTAC
1 TTACTTGCTTAC
36744436 TTA
1 TTA
36744439 AATAACTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.21, C:0.23, G:0.05, T:0.51
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:36744872 original size:49 final size:50
Alignment explanation
Indices: 36744700--36744926 Score: 222
Period size: 50 Copynumber: 4.4 Consensus size: 50
36744690 CAATGTCAGA
* ** * * *
36744700 TCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
* * ** *
36744750 TCCCCGACATGTTCTTACGGGGGACCTCTCATCTCGATGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
* * * *
36744800 TCCCAGACATGGTCTAACATGGGACCTCTCATCTTGGTGCCAACACCATA
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
* * *
36744850 T-CCAGACATGGTCTTACATGGGACCTTTCATAATCTCAATGATGCCAATGCCATG
1 TCCCAGACATGGTCTTACATGGGACC--TC-TCATCTC---GGTGCCAACGCCATG
*
36744905 TCTCAGACATGGTCTTACATGG
1 TCCCAGACATGGTCTTACATGG
36744927 TATCTCATTC
Statistics
Matches: 142, Mismatches: 28, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
49 23 0.16
50 81 0.57
51 2 0.01
52 5 0.04
55 12 0.08
56 19 0.13
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
Found at i:36746074 original size:28 final size:28
Alignment explanation
Indices: 36746032--36746101 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
36746022 CTATTCAGTA
*
36746032 ACAGTA-CAGTGTGGGCCTTAGCCCGAT
1 ACAGTAGCAGTGTGGGCCTTAGCCCAAT
*
36746059 ACAGTAGCAATGTGGGCCTTAGCCCAAT
1 ACAGTAGCAGTGTGGGCCTTAGCCCAAT
36746087 ACAGTAGCAGTGTGG
1 ACAGTAGCAGTGTGG
36746102 CCTATAACAC
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 6 0.15
28 33 0.85
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.21
Consensus pattern (28 bp):
ACAGTAGCAGTGTGGGCCTTAGCCCAAT
Found at i:36747204 original size:12 final size:12
Alignment explanation
Indices: 36747179--36747217 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
36747169 ACTCGCTTCT
* *
36747179 TTACTTACTCAC
1 TTACTTGCTTAC
*
36747191 TTACTTGTTTAC
1 TTACTTGCTTAC
36747203 TTACTTGCTTAC
1 TTACTTGCTTAC
36747215 TTA
1 TTA
36747218 AATAACTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.21, C:0.23, G:0.05, T:0.51
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:36747577 original size:50 final size:50
Alignment explanation
Indices: 36747479--36747707 Score: 201
Period size: 50 Copynumber: 4.5 Consensus size: 50
36747469 CAATGTCAGA
* * ** * * * *
36747479 TCCCAGATATGGTTTTACATGGGAGTTCTCATATCGGTGCGC-ATGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTAATCTCGATGC-CAACGCCATG
* ** *
36747529 TCCCAGACATGTTCTTACGGGGGACCTCTTATCTCGATGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTAATCTCGATGCCAACGCCATG
* * * * * *
36747579 TCCCAGACATGGTCTAACATGGGACCTCTCATCTCGGTGCCAGCACCATA
1 TCCCAGACATGGTCTTACATGGGACCTCTAATCTCGATGCCAACGCCATG
*
36747629 T-CCAGACATGGTCTTACATGGGACCTTTCATAATCTCAATGATGCCAATGCCATG
1 TCCCAGACATGGTCTTACATGGGACC--TC-TAATCTC---GATGCCAACGCCATG
*
36747684 TCTCAGACATGGTCTTACATGGGA
1 TCCCAGACATGGTCTTACATGGGA
36747708 TCTCATTCCC
Statistics
Matches: 143, Mismatches: 28, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
49 24 0.17
50 79 0.55
51 2 0.01
52 6 0.04
55 11 0.08
56 21 0.15
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.28
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGGGACCTCTAATCTCGATGCCAACGCCATG
Found at i:36747599 original size:100 final size:101
Alignment explanation
Indices: 36747479--36747707 Score: 250
Period size: 100 Copynumber: 2.2 Consensus size: 101
36747469 CAATGTCAGA
* * ** * *
36747479 TCCCAGATATGGTTTTACATGGGAGTTCTCATATCGGTGCGCATG-CCATGTCCCAGACATGTTC
1 TCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGC-CA-GACCATAT-CCAGACATGGTC
* *
36747543 TTACGGGGGACC-TC-TTATCTC-GATGCCAACGCCATG
63 TTACAGGGGACCTTCATAATCTCAGATGCCAACGCCATG
* *
36747579 TCCCAGACATGGTCTAACATGGGACCTCTCATCTCGGTGCCAGCACCATATCCAGACATGGTCTT
1 TCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAG-ACCATATCCAGACATGGTCTT
* *
36747644 ACATGGGACCTTTCATAATCTCAATGATGCCAATGCCATG
65 ACAGGGGACC-TTCATAATCTC-A-GATGCCAACGCCATG
*
36747684 TCTCAGACATGGTCTTACATGGGA
1 TCCCAGACATGGTCTTACATGGGA
36747708 TCTCATTCCC
Statistics
Matches: 107, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
98 1 0.01
99 23 0.21
100 39 0.36
101 2 0.02
102 6 0.06
105 36 0.34
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.28
Consensus pattern (101 bp):
TCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAGACCATATCCAGACATGGTCTTA
CAGGGGACCTTCATAATCTCAGATGCCAACGCCATG
Found at i:36748082 original size:30 final size:30
Alignment explanation
Indices: 36748048--36748106 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
36748038 TCCTTGACTC
36748048 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * *
36748078 AAACTTTTGCATAATTACACTTTTGCCCC
1 AAACTTTGGAAAAATTACAATTTTGCCCC
36748107 AAAGCTCAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:36748977 original size:28 final size:28
Alignment explanation
Indices: 36748924--36748977 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
36748914 GGATGTTACA
*
36748924 GGGCCTTAGCCCAATACAATAGCAGTGT
1 GGGCCTTAGCCCAATACAATAACAGTGT
*
36748952 GGGCCTTAGCCCAATACAGTAACAGT
1 GGGCCTTAGCCCAATACAATAACAGT
36748978 ACAGTGGAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.24, T:0.20
Consensus pattern (28 bp):
GGGCCTTAGCCCAATACAATAACAGTGT
Found at i:36749317 original size:27 final size:27
Alignment explanation
Indices: 36749287--36749344 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
36749277 TCGAATCCTA
*
36749287 GGGGTATAACAGTCATTCTACCCTATG
1 GGGGCATAACAGTCATTCTACCCTATG
** * *
36749314 GGGGCATTTCGGTCATTTTACCCTATG
1 GGGGCATAACAGTCATTCTACCCTATG
36749341 GGGG
1 GGGG
36749345 GTATTTCGGC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.31
Consensus pattern (27 bp):
GGGGCATAACAGTCATTCTACCCTATG
Found at i:36749405 original size:27 final size:27
Alignment explanation
Indices: 36749319--36749521 Score: 239
Period size: 27 Copynumber: 7.5 Consensus size: 27
36749309 CTATGGGGGC
* *
36749319 ATTTCGGTCATTTTACCCTATGGGGGGT
1 ATTTCGGTCATTTTACCCT-TCGAGGGT
* * *
36749347 ATTTCGGCCATTTTACTC-TCTAGGGT
1 ATTTCGGTCATTTTACCCTTCGAGGGT
36749373 ATTTCGGTCATTTTACCCTTCGAGGGT
1 ATTTCGGTCATTTTACCCTTCGAGGGT
*
36749400 ATTTCGGTCATTTTACCTTTCGAGGGT
1 ATTTCGGTCATTTTACCCTTCGAGGGT
*
36749427 ATTTCGGTCATTTTACCCTTCGAAGGT
1 ATTTCGGTCATTTTACCCTTCGAGGGT
* *
36749454 ATTTCGATCATTTCACCCTTC-AGGGAT
1 ATTTCGGTCATTTTACCCTTCGAGGG-T
* ** * *
36749481 ATTTCGATTTTTTTAACCATCGAGGGT
1 ATTTCGGTCATTTTACCCTTCGAGGGT
*
36749508 ATTTTGGTCATTTT
1 ATTTCGGTCATTTT
36749522 CCCACAAATC
Statistics
Matches: 149, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
26 24 0.16
27 105 0.70
28 20 0.13
ACGTcount: A:0.17, C:0.20, G:0.20, T:0.43
Consensus pattern (27 bp):
ATTTCGGTCATTTTACCCTTCGAGGGT
Found at i:36752970 original size:40 final size:40
Alignment explanation
Indices: 36752887--36753111 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
36752877 TTGAATGATG
* * * *
36752887 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
36752927 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
36752967 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36753007 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
36753047 TTCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36753087 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36753112 AACGAGGAGC
Statistics
Matches: 167, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
39 34 0.20
40 125 0.75
41 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36753100 original size:119 final size:120
Alignment explanation
Indices: 36752887--36753109 Score: 317
Period size: 119 Copynumber: 1.9 Consensus size: 120
36752877 TTGAATGATG
*
36752887 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
36752952 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAA
* * * * * **
36753007 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATTCGGGTTAAG-TCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
36753070 TGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
65 TGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
36753110 TGAACGAGGA
Statistics
Matches: 91, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
119 47 0.52
120 37 0.41
121 7 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAA
Found at i:36753141 original size:79 final size:79
Alignment explanation
Indices: 36752926--36753144 Score: 257
Period size: 79 Copynumber: 2.8 Consensus size: 79
36752916 AAGTGACCAT
* * *
36752926 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC-GGTTAAATTCCGAAGGCAT
36752990 TGGTGCGAGTTACTAA
64 TGGTGCGAGTTACTAA
* * *
36753006 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATTCGGGTT-AAGTCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA-TCCGGTTAAATTCCGAAGGCATT
*
36753070 TGTGCGAGTTACTATA
65 GGTGCGAGTTACTA-A
* ** * *
36753086 A-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGTTAAATTCCGAAGG
36753145 TACGTGATTT
Statistics
Matches: 119, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
78 7 0.06
79 67 0.56
80 43 0.36
81 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGTTAAATTCCGAAGGCATTG
GTGCGAGTTACTAA
Found at i:36760854 original size:40 final size:40
Alignment explanation
Indices: 36760771--36760996 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
36760761 TTGAATGATG
* * * *
36760771 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
36760811 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
36760851 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
36760891 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
**
36760931 TCCGGATTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36760972 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36760997 AACGAGGAGC
Statistics
Matches: 167, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 156 0.93
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36761014 original size:120 final size:120
Alignment explanation
Indices: 36760771--36761029 Score: 303
Period size: 120 Copynumber: 2.2 Consensus size: 120
36760761 TTGAATGATG
* *
36760771 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
36760836 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTGGAACGAGTGACTAAA
* * * * *
36760891 TCCGGGTTAAGTCTCGAAGGCATTTGTGC-GAGTTACTAAATCCGGATTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
36760954 TTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
36761011 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
36761030 TACGTGATTT
Statistics
Matches: 118, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
119 15 0.13
120 94 0.80
121 9 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:36763019 original size:51 final size:52
Alignment explanation
Indices: 36762900--36763028 Score: 190
Period size: 51 Copynumber: 2.5 Consensus size: 52
36762890 ACTAGTGACT
36762900 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
* * *
36762952 TAAGTGTGGTATTATGTGAAGGCCACTTTGTGAAG-AAGGTAGCTTTGG-CTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTC-A
* *
36763003 CAAGGGTGGTACTATGTGCAGGCCAC
1 CAAGTGTGGTACTATGTGAAGGCCAC
36763029 CGGGTATCCG
Statistics
Matches: 69, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
50 1 0.01
51 35 0.51
52 33 0.48
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (52 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
Found at i:36764758 original size:24 final size:24
Alignment explanation
Indices: 36764726--36764779 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
36764716 CATGGAAATG
* *
36764726 AATTCCTACAAGTGGCCAAACAAA
1 AATTCCTACAACTGACCAAACAAA
36764750 AATTCCTACAACTGACCAAACAAA
1 AATTCCTACAACTGACCAAACAAA
36764774 AGATTC
1 A-ATTC
36764780 ACTTACGGCC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 23 0.85
25 4 0.15
ACGTcount: A:0.46, C:0.26, G:0.09, T:0.19
Consensus pattern (24 bp):
AATTCCTACAACTGACCAAACAAA
Found at i:36766620 original size:42 final size:42
Alignment explanation
Indices: 36766566--36766669 Score: 145
Period size: 42 Copynumber: 2.5 Consensus size: 42
36766556 AGGATACGGT
* * * *
36766566 GGAATCAGCACTTAGCAACCACCTTTAGAATAGATAATTCGG
1 GGAATCAACACTTAGCAACCAACTTTAGAATAAATAATTCAG
* *
36766608 GGAATCAACACTTACCAACCAACTTTAGAATAAATAATTCAT
1 GGAATCAACACTTAGCAACCAACTTTAGAATAAATAATTCAG
*
36766650 GGAATCACCACTTAGCAACC
1 GGAATCAACACTTAGCAACC
36766670 CCTCGGGTAA
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 54 1.00
ACGTcount: A:0.39, C:0.24, G:0.13, T:0.23
Consensus pattern (42 bp):
GGAATCAACACTTAGCAACCAACTTTAGAATAAATAATTCAG
Found at i:36766729 original size:41 final size:41
Alignment explanation
Indices: 36766672--36766862 Score: 244
Period size: 41 Copynumber: 4.7 Consensus size: 41
36766662 TAGCAACCCC
*
36766672 TCGGGTAATCTGCACTTAGCAACCCCTTTTTTATCAGAGTT
1 TCGGGGAATCTGCACTTAGCAACCCCTTTTTTATCAGAGTT
* *
36766713 TCGGGGAATTTGCACTTAGCAACCCCATTTTTATCAGAGTT
1 TCGGGGAATCTGCACTTAGCAACCCCTTTTTTATCAGAGTT
* * *
36766754 TCAGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGTGATT
1 TCGGGGAATCTGCACTTAGCAACCCCTTTTTTATCAGAG-TT
* * * *
36766796 T-GGGGTATCTGCATTTAGCAA-CCCTTTTTTGATCAGTGAT
1 TCGGGGAATCTGCACTTAGCAACCCCTTTTTT-ATCAGAGTT
*
36766836 TCGGGGAA-CTGCACTTAGCAGCCCCTT
1 TCGGGGAATCTGCACTTAGCAACCCCTT
36766863 ACATTCAATG
Statistics
Matches: 130, Mismatches: 16, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
40 21 0.16
41 106 0.82
42 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (41 bp):
TCGGGGAATCTGCACTTAGCAACCCCTTTTTTATCAGAGTT
Found at i:36773898 original size:16 final size:17
Alignment explanation
Indices: 36773879--36773911 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
36773869 TCTCAAAATT
*
36773879 CTTAAA-CCTTAAAACC
1 CTTAAATCCTAAAAACC
36773895 CTTAAATCCTAAAAACC
1 CTTAAATCCTAAAAACC
36773912 TTATCTGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.45, C:0.30, G:0.00, T:0.24
Consensus pattern (17 bp):
CTTAAATCCTAAAAACC
Found at i:36775351 original size:28 final size:28
Alignment explanation
Indices: 36775298--36775351 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
36775288 TTGTATAAGT
* *
36775298 TATTAAACATTATAAAAAATTGAAAAAA
1 TATTAAACATCATAAAAAATTAAAAAAA
*
36775326 TATTAAA-ATCATAAAATTATTAAAAA
1 TATTAAACATCATAAAA-AATTAAAAA
36775352 CAACTGTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 8 0.36
28 14 0.64
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (28 bp):
TATTAAACATCATAAAAAATTAAAAAAA
Found at i:36777001 original size:21 final size:22
Alignment explanation
Indices: 36776961--36777010 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
36776951 CATGAAGAAG
*
36776961 AGAAGCAAGAGAGTGATGAGCA
1 AGAAGAAAGAGAGTGATGAGCA
* *
36776983 AGAAGAAAGCGAG-GATGAGGA
1 AGAAGAAAGAGAGTGATGAGCA
*
36777004 AGGAGAA
1 AGAAGAA
36777011 GGGAATGAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 13 0.54
22 11 0.46
ACGTcount: A:0.48, C:0.06, G:0.40, T:0.06
Consensus pattern (22 bp):
AGAAGAAAGAGAGTGATGAGCA
Found at i:36777131 original size:17 final size:17
Alignment explanation
Indices: 36777066--36777131 Score: 62
Period size: 17 Copynumber: 3.8 Consensus size: 17
36777056 TTGTAATTTT
*
36777066 TAATGTTTATTTTTGGA
1 TAATGTTTATTTTGGGA
*
36777083 GT-TTGTATTAATTTTGGGA
1 -TAATGT-TT-ATTTTGGGA
* *
36777102 TAATTTTTTTTTTGGGA
1 TAATGTTTATTTTGGGA
36777119 TAATGTTTATTTT
1 TAATGTTTATTTT
36777132 CTTTTCAGTT
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
17 22 0.58
18 6 0.16
19 10 0.26
ACGTcount: A:0.21, C:0.00, G:0.18, T:0.61
Consensus pattern (17 bp):
TAATGTTTATTTTGGGA
Found at i:36780998 original size:30 final size:30
Alignment explanation
Indices: 36780937--36781349 Score: 342
Period size: 30 Copynumber: 13.8 Consensus size: 30
36780927 TTTATAGTTC
* * ** *
36780937 GATAGCCGAAGCTATCCCTTCCCATATTTT
1 GATAGTCGAAGCCATCCCTTTTCATAATTT
* *
36780967 GATAGTTGAAGCCATCCCTTGTCATAATTT
1 GATAGTCGAAGCCATCCCTTTTCATAATTT
* * *
36780997 GATGGTCGTCA-CCATCTCTTTTCAT--TGTT
1 GATAGTCG-AAGCCATCCCTTTTCATAAT-TT
* * *
36781026 GATGGTTGTTA-CCATCCCTTTTCATAATTT
1 GATAGTCG-AAGCCATCCCTTTTCATAATTT
* *
36781056 GATAGTCGAAGCCATCCCTTGTCATAATTC
1 GATAGTCGAAGCCATCCCTTTTCATAATTT
* * *
36781086 GATGGTCG-TGACCATCTCTTTTCAT--TGTT
1 GATAGTCGAAG-CCATCCCTTTTCATAAT-TT
* * *
36781115 GATGGTTGTTA-CCATCCCTTTTCATAATTT
1 GATAGTCG-AAGCCATCCCTTTTCATAATTT
* *
36781145 GATAGCCGAAGCCATCCCTTTTCATAATTC
1 GATAGTCGAAGCCATCCCTTTTCATAATTT
* * * *
36781175 AATAGTTGAAGCTATCCCTTTTCATAATTC
1 GATAGTCGAAGCCATCCCTTTTCATAATTT
* * *
36781205 GATAGCCGAAGCTACCCCTTTTCATAATTT
1 GATAGTCGAAGCCATCCCTTTTCATAATTT
**
36781235 GATAGTCGAAGTTATCCCTTTTCATAATTT
1 GATAGTCGAAGCCATCCCTTTTCATAATTT
* * *
36781265 GATAGAT-GAA-CTCATCTCTTTCCATATTTT
1 GATAG-TCGAAGC-CATCCCTTTTCATAATTT
* *
36781295 GATAGTCGAAGCCATCCCTTTCCATATTTT
1 GATAGTCGAAGCCATCCCTTTTCATAATTT
*
36781325 GATAGCCGAAGCCATCCCTTTTCAT
1 GATAGTCGAAGCCATCCCTTTTCAT
36781350 TAGTCGATGA
Statistics
Matches: 315, Mismatches: 52, Indels: 32
0.79 0.13 0.08
Matches are distributed among these distances:
28 2 0.01
29 49 0.16
30 259 0.82
31 5 0.02
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.38
Consensus pattern (30 bp):
GATAGTCGAAGCCATCCCTTTTCATAATTT
Found at i:36781061 original size:89 final size:89
Alignment explanation
Indices: 36780950--36781174 Score: 378
Period size: 89 Copynumber: 2.5 Consensus size: 89
36780940 AGCCGAAGCT
** * * *
36780950 ATCCCTTCCCATATTTTGATAGTTGAAGCCATCCCTTGTCATAATTTGATGGTCGTCACCATCTC
1 ATCCCTTTTCATAATTTGATAGTCGAAGCCATCCCTTGTCATAATTCGATGGTCGTCACCATCTC
36781015 TTTTCATTGTTGATGGTTGTTACC
66 TTTTCATTGTTGATGGTTGTTACC
*
36781039 ATCCCTTTTCATAATTTGATAGTCGAAGCCATCCCTTGTCATAATTCGATGGTCGTGACCATCTC
1 ATCCCTTTTCATAATTTGATAGTCGAAGCCATCCCTTGTCATAATTCGATGGTCGTCACCATCTC
36781104 TTTTCATTGTTGATGGTTGTTACC
66 TTTTCATTGTTGATGGTTGTTACC
* *
36781128 ATCCCTTTTCATAATTTGATAGCCGAAGCCATCCCTTTTCATAATTC
1 ATCCCTTTTCATAATTTGATAGTCGAAGCCATCCCTTGTCATAATTC
36781175 AATAGTTGAA
Statistics
Matches: 128, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
89 128 1.00
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (89 bp):
ATCCCTTTTCATAATTTGATAGTCGAAGCCATCCCTTGTCATAATTCGATGGTCGTCACCATCTC
TTTTCATTGTTGATGGTTGTTACC
Found at i:36788679 original size:30 final size:29
Alignment explanation
Indices: 36788645--36788721 Score: 86
Period size: 28 Copynumber: 2.7 Consensus size: 29
36788635 ATAGCCAGAG
**
36788645 CCATCCCTTTTCATAATTTAATTATTGTCA
1 CCATCCCTTTTCATAATTTAA-TATCCTCA
* *
36788675 CCATCCCTTTTCAT--TGTTGATGTCCTCA
1 CCATCCCTTTTCATAAT-TTAATATCCTCA
36788703 CCATCCCTTTTCATAATTT
1 CCATCCCTTTTCATAATTT
36788722 GATAGCCGAA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
28 20 0.50
29 5 0.12
30 15 0.38
ACGTcount: A:0.21, C:0.29, G:0.05, T:0.45
Consensus pattern (29 bp):
CCATCCCTTTTCATAATTTAATATCCTCA
Found at i:36788739 original size:30 final size:29
Alignment explanation
Indices: 36788611--36788743 Score: 89
Period size: 30 Copynumber: 4.5 Consensus size: 29
36788601 TTCGATAGTT
* * * *
36788611 CAAGCTATCCCTTTCCGTATTTTGATAGC
1 CAAGCCATCCCTTTTCATAATTTGATAGC
* *
36788640 CAGAGCCATCCCTTTTCATAATTTAATTATTGT
1 CA-AGCCATCCCTTTTCATAATTTGA-TA--GC
36788673 C-A-CCATCCCTTTTCAT--TGTTGAT-GTC
1 CAAGCCATCCCTTTTCATAAT-TTGATAG-C
*
36788699 CTCA-CCATCCCTTTTCATAATTTGATAGC
1 C-AAGCCATCCCTTTTCATAATTTGATAGC
36788728 CGAAGCCATCCCTTTT
1 C-AAGCCATCCCTTTT
36788744 TTAAATTCGA
Statistics
Matches: 82, Mismatches: 10, Indels: 23
0.71 0.09 0.20
Matches are distributed among these distances:
25 1 0.01
26 1 0.01
28 17 0.21
29 13 0.16
30 45 0.55
31 3 0.04
33 2 0.02
ACGTcount: A:0.22, C:0.29, G:0.11, T:0.39
Consensus pattern (29 bp):
CAAGCCATCCCTTTTCATAATTTGATAGC
Found at i:36788767 original size:30 final size:29
Alignment explanation
Indices: 36788671--36788792 Score: 79
Period size: 29 Copynumber: 4.2 Consensus size: 29
36788661 TTTAATTATT
* ** *
36788671 GTCACCATCCCTTTTCATTGTTGAT-GTC
1 GTCACCATCCTTTTTCATAATTCATGGTC
* * * * *
36788699 CTCACCATCCCTTTTCATAATTTGATAGCC
1 GTCACCATCCTTTTTCATAA-TTCATGGTC
* *
36788729 G-AAGCCATCCCTTTTTTA-AATTCGATGGTC
1 GTCA-CCAT-CCTTTTTCATAATTC-ATGGTC
*
36788759 GTCACCATCCTTTTTCATTATTCATGGTC
1 GTCACCATCCTTTTTCATAATTCATGGTC
36788788 GTCAC
1 GTCAC
36788793 TGTCCATTTT
Statistics
Matches: 73, Mismatches: 14, Indels: 13
0.73 0.14 0.13
Matches are distributed among these distances:
28 17 0.23
29 27 0.37
30 21 0.29
31 8 0.11
ACGTcount: A:0.20, C:0.29, G:0.12, T:0.39
Consensus pattern (29 bp):
GTCACCATCCTTTTTCATAATTCATGGTC
Found at i:36792854 original size:27 final size:25
Alignment explanation
Indices: 36792824--36792878 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 25
36792814 CTCTTTCGAG
* *
36792824 TTAATAAATTCTCTTTGGGTTTTTCTT
1 TTAAGAAATTCTC-TTGAG-TTTTCTT
*
36792851 TTAAGAATTTCTCTTGAGTTTTCTT
1 TTAAGAAATTCTCTTGAGTTTTCTT
36792876 TTA
1 TTA
36792879 GAAGAGTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 10 0.40
26 4 0.16
27 11 0.44
ACGTcount: A:0.20, C:0.11, G:0.11, T:0.58
Consensus pattern (25 bp):
TTAAGAAATTCTCTTGAGTTTTCTT
Found at i:36793082 original size:13 final size:13
Alignment explanation
Indices: 36793059--36793114 Score: 51
Period size: 13 Copynumber: 4.2 Consensus size: 13
36793049 TATTTTATTC
* *
36793059 TCTTCTTTATTTT
1 TCTTATTTATTTA
36793072 TC-TATTTTATTTA
1 TCTTA-TTTATTTA
36793085 TCTTATTTATTTA
1 TCTTATTTATTTA
* *
36793098 TTTTAATTATTTTA
1 TCTTATTTA-TTTA
36793112 TCT
1 TCT
36793115 AACTTGGATT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
12 1 0.03
13 26 0.74
14 8 0.23
ACGTcount: A:0.20, C:0.09, G:0.00, T:0.71
Consensus pattern (13 bp):
TCTTATTTATTTA
Found at i:36797570 original size:18 final size:20
Alignment explanation
Indices: 36797533--36797571 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
36797523 GTAGGACTTG
36797533 TATACTGTATAATCTGTTAC
1 TATACTGTATAATCTGTTAC
*
36797553 TATACTG-ATTAT-TGTTAC
1 TATACTGTATAATCTGTTAC
36797571 T
1 T
36797572 GTAATGGGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 4 0.22
20 7 0.39
ACGTcount: A:0.28, C:0.13, G:0.10, T:0.49
Consensus pattern (20 bp):
TATACTGTATAATCTGTTAC
Found at i:36798270 original size:25 final size:25
Alignment explanation
Indices: 36798233--36798280 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
36798223 GGCTGAGTTG
36798233 GGGTGTTAAATTTAGTGGTATCAAA
1 GGGTGTTAAATTTAGTGGTATCAAA
*
36798258 GGGTGTTACATTTAGTGGTATCA
1 GGGTGTTAAATTTAGTGGTATCA
36798281 GAGTCAGGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.06, G:0.29, T:0.38
Consensus pattern (25 bp):
GGGTGTTAAATTTAGTGGTATCAAA
Found at i:36798478 original size:25 final size:25
Alignment explanation
Indices: 36798450--36798498 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
36798440 CTTATTTTGA
*
36798450 TAGTATATCCTGAAACTACTATAGG
1 TAGTATATACTGAAACTACTATAGG
*
36798475 TAGTATATACTGAGACTACTATAG
1 TAGTATATACTGAAACTACTATAG
36798499 ATAGGCTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (25 bp):
TAGTATATACTGAAACTACTATAGG
Found at i:36798510 original size:25 final size:25
Alignment explanation
Indices: 36798448--36798514 Score: 71
Period size: 25 Copynumber: 2.7 Consensus size: 25
36798438 AACTTATTTT
* *
36798448 GATAGTATATCCTGAAACTACTATA
1 GATAGGATATACTGAAACTACTATA
* * *
36798473 GGTAGTATATACTGAGACTACTATA
1 GATAGGATATACTGAAACTACTATA
* *
36798498 GATAGGCTGTACTGAAA
1 GATAGGATATACTGAAA
36798515 ACACTTAAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.30
Consensus pattern (25 bp):
GATAGGATATACTGAAACTACTATA
Found at i:36805000 original size:78 final size:78
Alignment explanation
Indices: 36804871--36805029 Score: 300
Period size: 78 Copynumber: 2.0 Consensus size: 78
36804861 TAAATGTTCC
* *
36804871 AATTAAAACTTTTACTGTTGCGTTAGAAATATATTGTTTGACATTAAGTTAGTCTCTCTAGTTAG
1 AATTAAAACTTTTACTGTTGCATTAGAAATATATTGTTTGACATTAAGTTAGTCTCCCTAGTTAG
36804936 AAATTTTATCAAA
66 AAATTTTATCAAA
36804949 AATTAAAACTTTTACTGTTGCATTAGAAATATATTGTTTGACATTAAGTTAGTCTCCCTAGTTAG
1 AATTAAAACTTTTACTGTTGCATTAGAAATATATTGTTTGACATTAAGTTAGTCTCCCTAGTTAG
36805014 AAATTTTATCAAA
66 AAATTTTATCAAA
36805027 AAT
1 AAT
36805030 GCCTCCGAAA
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
78 79 1.00
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.42
Consensus pattern (78 bp):
AATTAAAACTTTTACTGTTGCATTAGAAATATATTGTTTGACATTAAGTTAGTCTCCCTAGTTAG
AAATTTTATCAAA
Found at i:36805318 original size:17 final size:17
Alignment explanation
Indices: 36805296--36805330 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
36805286 CATTTAGCGA
36805296 CTAAGAGCCTGGGAGAC
1 CTAAGAGCCTGGGAGAC
36805313 CTAAGAGCCTGGGAGAC
1 CTAAGAGCCTGGGAGAC
36805330 C
1 C
36805331 AGAGGGTGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.26, G:0.34, T:0.11
Consensus pattern (17 bp):
CTAAGAGCCTGGGAGAC
Found at i:36806014 original size:24 final size:24
Alignment explanation
Indices: 36805982--36806031 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
36805972 AAAAAAAAAG
36805982 AATTTGGCGAGAGTAGCATTCCAC
1 AATTTGGCGAGAGTAGCATTCCAC
36806006 AATTTGGCGAGAGTAGCATTCCAC
1 AATTTGGCGAGAGTAGCATTCCAC
36806030 AA
1 AA
36806032 AAAAAAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (24 bp):
AATTTGGCGAGAGTAGCATTCCAC
Found at i:36808943 original size:17 final size:17
Alignment explanation
Indices: 36808914--36808947 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
36808904 AGATGATAGC
36808914 CTTTTCATCTTTTAATT
1 CTTTTCATCTTTTAATT
36808931 CTTTTACAT-TTTTAATT
1 CTTTT-CATCTTTTAATT
36808948 AATTATCGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.81
18 3 0.19
ACGTcount: A:0.21, C:0.15, G:0.00, T:0.65
Consensus pattern (17 bp):
CTTTTCATCTTTTAATT
Found at i:36809535 original size:19 final size:19
Alignment explanation
Indices: 36809495--36809535 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
36809485 CTTAGCCCAG
*
36809495 CAAAACCCAATATCCAAAA
1 CAAAACCCAATACCCAAAA
36809514 CAAAACCCAA-ACCCAAATA
1 CAAAACCCAATACCCAAA-A
36809533 CAA
1 CAA
36809536 CTAAACCCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.59, C:0.34, G:0.00, T:0.07
Consensus pattern (19 bp):
CAAAACCCAATACCCAAAA
Found at i:36809953 original size:13 final size:13
Alignment explanation
Indices: 36809935--36809974 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
36809925 TTTATATTTT
36809935 TAAAAAACGAAAA
1 TAAAAAACGAAAA
*
36809948 TAAAAAAAGAAAA
1 TAAAAAACGAAAA
*
36809961 TAGAAAACGAAAA
1 TAAAAAACGAAAA
36809974 T
1 T
36809975 TTCAGAGTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.75, C:0.05, G:0.10, T:0.10
Consensus pattern (13 bp):
TAAAAAACGAAAA
Found at i:36816415 original size:16 final size:16
Alignment explanation
Indices: 36816394--36816424 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
36816384 AAACTCAAAT
36816394 TTTCTTGAGTTTGAAC
1 TTTCTTGAGTTTGAAC
36816410 TTTCTTGAGTTTGAA
1 TTTCTTGAGTTTGAA
36816425 TTTTTCTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.10, G:0.19, T:0.52
Consensus pattern (16 bp):
TTTCTTGAGTTTGAAC
Found at i:36816492 original size:33 final size:33
Alignment explanation
Indices: 36816423--36816492 Score: 77
Period size: 33 Copynumber: 2.1 Consensus size: 33
36816413 CTTGAGTTTG
* * * *
36816423 AATTTTTCTCATACTTAAATTATTAGGAATTTA
1 AATTTTTCTCAAACTTAAATTATTAGAAACTCA
* * *
36816456 AATTTTTTTCAAACTTAGATTATTATAAACTCA
1 AATTTTTCTCAAACTTAAATTATTAGAAACTCA
36816489 AATT
1 AATT
36816493 GGTATAAAAG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.39, C:0.10, G:0.04, T:0.47
Consensus pattern (33 bp):
AATTTTTCTCAAACTTAAATTATTAGAAACTCA
Found at i:36821703 original size:18 final size:16
Alignment explanation
Indices: 36821680--36821714 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 16
36821670 CCTTGACTAA
36821680 CTATCCAATTAATAAAAT
1 CTATCCAA-TAA-AAAAT
36821698 CTATCCAATAAAAAAT
1 CTATCCAATAAAAAAT
36821714 C
1 C
36821715 ACCATAATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 3 0.18
18 8 0.47
ACGTcount: A:0.51, C:0.20, G:0.00, T:0.29
Consensus pattern (16 bp):
CTATCCAATAAAAAAT
Found at i:36822662 original size:17 final size:19
Alignment explanation
Indices: 36822628--36822665 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
36822618 AACTCCATTA
36822628 CAAACTATATACATTTAAC
1 CAAACTATATACATTTAAC
*
36822647 CAAATTATA-ACA-TTAAC
1 CAAACTATATACATTTAAC
36822664 CA
1 CA
36822666 TTAAACCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
18 3 0.17
19 8 0.44
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (19 bp):
CAAACTATATACATTTAAC
Found at i:36823550 original size:86 final size:86
Alignment explanation
Indices: 36823402--36823682 Score: 273
Period size: 86 Copynumber: 3.3 Consensus size: 86
36823392 ATCTGGCACT
* * * *
36823402 GTAGTGTATCATCGGATAAACT-GAAGGAAATATACTGACATATACAGTGCATCATCAGACAAGC
1 GTAGTGCATCATCAGATAAACTAGAAGGAAATATACTGACACACACAGTGCATCATCA-ACAAGC
* *
36823466 CAAAGCAATTATACTATCACAT
65 CAAAGCAATTATACTAGCACAC
* * * *
36823488 GTAGTGCATCATCAGATAAA-TAGAAAGAAATATAATGTCACACATAGTGCATCATCGAACAAGC
1 GTAGTGCATCATCAGATAAACTAGAAGGAAATATACTGACACACACAGTGCATCATC-AACAAGC
* * **
36823552 CGAAGCGATTATACTAGCATGC
65 CAAAGCAATTATACTAGCACAC
** * * * * ***
36823574 GTAGTGCATCATTGGATAAACCA-AAGGAAACATACTGGCACAGACAACACATCATCAAACAAGC
1 GTAGTGCATCATCAGATAAACTAGAAGGAAATATACTGACACACACAGTGCATCATC-AACAAGC
*
36823638 TGAAA-CAATTATACTAGCACAC
65 -CAAAGCAATTATACTAGCACAC
*
36823660 GCAGTGCATCATCAGATAAACTA
1 GTAGTGCATCATCAGATAAACTA
36823683 AAGCAATTAT
Statistics
Matches: 155, Mismatches: 36, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
85 1 0.01
86 150 0.97
87 4 0.03
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.21
Consensus pattern (86 bp):
GTAGTGCATCATCAGATAAACTAGAAGGAAATATACTGACACACACAGTGCATCATCAACAAGCC
AAAGCAATTATACTAGCACAC
Found at i:36823690 original size:43 final size:43
Alignment explanation
Indices: 36823446--36823803 Score: 135
Period size: 43 Copynumber: 8.4 Consensus size: 43
36823436 CTGACATATA
* * * *
36823446 CAGTGCATCATCAGACAAGCCAAAGCAATTATACTATCACATG
1 CAGTGCATCATCAGATAAACCAAAGCAATTATACTAGCACACG
* ** * * *
36823489 TAGTGCATCATCAGATAAATAGAAAG-AAATATAAT-GTCACACA
1 CAGTGCATCATCAGATAAA-CCAAAGCAATTATACTAG-CACACG
* * * **
36823532 TAGTGCATCATC-GA-ACAAGCCGAAGCGATTATACTAGCATGCG
1 CAGTGCATCATCAGATA-AA-CCAAAGCAATTATACTAGCACACG
* ** * ** *
36823575 TAGTGCATCATTGGATAAACCAAAGGAAACATACTGGCACA-G
1 CAGTGCATCATCAGATAAACCAAAGCAATTATACTAGCACACG
*** * * * *
36823617 ACAACACATCATCAAACAAGCTGAAA-CAATTATACTAGCACACG
1 -CAGTGCATCATCAGATAAAC-CAAAGCAATTATACTAGCACACG
* * *
36823661 CAGTGCATCATCAGATAAACTAAAGCAATTATGC-AG-GCACG
1 CAGTGCATCATCAGATAAACCAAAGCAATTATACTAGCACACG
* * * ** * * * *
36823702 TAAGTGCATCACCGGATGTACC-GAGAAAATATACT-G-ACACAT
1 -CAGTGCATCATCAGATAAACCAAAGCAATTATACTAGCACAC-G
* * * * * * *
36823744 AAATGCATCATCGGATATACCAAAGCAATTATACTGGCACGCA
1 CAGTGCATCATCAGATAAACCAAAGCAATTATACTAGCACACG
36823787 CAGTGCATCATCAGATA
1 CAGTGCATCATCAGATA
36823804 TACCGGAGTA
Statistics
Matches: 223, Mismatches: 75, Indels: 34
0.67 0.23 0.10
Matches are distributed among these distances:
41 35 0.16
42 38 0.17
43 133 0.60
44 16 0.07
45 1 0.00
ACGTcount: A:0.41, C:0.22, G:0.17, T:0.20
Consensus pattern (43 bp):
CAGTGCATCATCAGATAAACCAAAGCAATTATACTAGCACACG
Found at i:36826328 original size:15 final size:15
Alignment explanation
Indices: 36826308--36826338 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
36826298 TTCCGATCCT
36826308 TGATGATGATGATAA
1 TGATGATGATGATAA
36826323 TGATGATGATGATAA
1 TGATGATGATGATAA
36826338 T
1 T
36826339 AAACTTTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.26, T:0.35
Consensus pattern (15 bp):
TGATGATGATGATAA
Found at i:36831441 original size:37 final size:37
Alignment explanation
Indices: 36831391--36831469 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
36831381 TTATTACGAA
* * *
36831391 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
36831428 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
36831465 GTCTT
1 GTCTT
36831470 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:36831666 original size:47 final size:47
Alignment explanation
Indices: 36831590--36831763 Score: 215
Period size: 47 Copynumber: 3.7 Consensus size: 47
36831580 CTTCGGGACT
* * * * *
36831590 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* * *
36831637 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* *
36831684 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* * *
36831731 TATCTCATATATGCA-TGTTCACATCCATCACAT
1 TATCACATATATACACT-TTCACATTCATCACAT
36831764 AGAATCCAAA
Statistics
Matches: 114, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
46 1 0.01
47 113 0.99
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
Found at i:36831752 original size:94 final size:94
Alignment explanation
Indices: 36831588--36831763 Score: 237
Period size: 94 Copynumber: 1.9 Consensus size: 94
36831578 CCCTTCGGGA
* * * * *
36831588 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
36831653 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATCCATCACATCGGCCATTAGGC
* * * * *
36831682 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGCA-
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
36831746 TGTTCACATCCATCACAT
66 T-TTCACATCCATCACAT
36831764 AGAATCCAAA
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
93 1 0.01
94 69 0.99
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATCCATCACATCGGCCATTAGGC
Found at i:36837108 original size:11 final size:11
Alignment explanation
Indices: 36837094--36837169 Score: 54
Period size: 11 Copynumber: 6.8 Consensus size: 11
36837084 GATAATCACT
36837094 TTAATATTAAA
1 TTAATATTAAA
36837105 TTAATA--AAA
1 TTAATATTAAA
36837114 -TAATATTAAGA
1 TTAATATTAA-A
36837125 -TAAGTATTAAA
1 TTAA-TATTAAA
36837136 TTAA-ATTTAATA
1 TTAATA-TTAA-A
36837148 TTAAACTATTAAA
1 TT-AA-TATTAAA
*
36837161 ATAATATTA
1 TTAATATTA
36837170 TTTTTAGAAT
Statistics
Matches: 54, Mismatches: 1, Indels: 20
0.72 0.01 0.27
Matches are distributed among these distances:
8 5 0.09
9 3 0.06
10 3 0.06
11 20 0.37
12 14 0.26
13 4 0.07
14 4 0.07
15 1 0.02
ACGTcount: A:0.55, C:0.01, G:0.03, T:0.41
Consensus pattern (11 bp):
TTAATATTAAA
Found at i:36840209 original size:16 final size:16
Alignment explanation
Indices: 36840188--36840228 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
36840178 ATATTTGATA
36840188 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
36840204 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
36840220 TAGTTTTAA
1 TAATTTTAA
36840229 GAAAAAAGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.46
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:36843922 original size:13 final size:14
Alignment explanation
Indices: 36843897--36843925 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
36843887 ATTAAAATGT
36843897 CTAAGTCTAGCTAG
1 CTAAGTCTAGCTAG
36843911 CTAAGT-TAGCTAG
1 CTAAGTCTAGCTAG
36843924 CT
1 CT
36843926 GATTCGAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (14 bp):
CTAAGTCTAGCTAG
Found at i:36848712 original size:27 final size:25
Alignment explanation
Indices: 36848662--36848712 Score: 66
Period size: 27 Copynumber: 2.0 Consensus size: 25
36848652 ATGTTTAATA
* *
36848662 AATAATTTATATTTTTTTATTTTTT
1 AATAATTTATATTTTTCTAATTTTT
36848687 AATAATATTATTATTTTTCTAATTTT
1 AATAAT-TTA-TATTTTTCTAATTTT
36848713 CAAATATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 6 0.27
26 3 0.14
27 13 0.59
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (25 bp):
AATAATTTATATTTTTCTAATTTTT
Found at i:36848718 original size:28 final size:25
Alignment explanation
Indices: 36848661--36848718 Score: 62
Period size: 28 Copynumber: 2.2 Consensus size: 25
36848651 GATGTTTAAT
* *
36848661 AAATAATTTATATTTTTTTATTTTT
1 AAATAATTTATATTTTTTAATTTTC
*
36848686 TAATAATATTATTATTTTTCTAATTTTC
1 AAATAAT-TTA-TATTTTT-TAATTTTC
36848714 AAATA
1 AAATA
36848719 TTTTTAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 6 0.23
26 3 0.12
27 7 0.27
28 10 0.38
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.60
Consensus pattern (25 bp):
AAATAATTTATATTTTTTAATTTTC
Found at i:36848980 original size:42 final size:42
Alignment explanation
Indices: 36848917--36848996 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 42
36848907 AACAATGGTA
* **
36848917 AAATAATTTAATTGATGTATTTTTTTAATTTAAGTATTTGAT
1 AAATAATTTAATTGATATATTTTTACAATTTAAGTATTTGAT
*
36848959 AAATAATTTAATTGATATATTTTTACAGTTTAAGTATT
1 AAATAATTTAATTGATATATTTTTACAATTTAAGTATT
36848997 CAATTAAGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.38, C:0.01, G:0.09, T:0.53
Consensus pattern (42 bp):
AAATAATTTAATTGATATATTTTTACAATTTAAGTATTTGAT
Found at i:36850152 original size:16 final size:16
Alignment explanation
Indices: 36850131--36850164 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
36850121 ACTATTTTTT
36850131 AAATATAAAATTAAAA
1 AAATATAAAATTAAAA
* *
36850147 AAATATTAACTTAAAA
1 AAATATAAAATTAAAA
36850163 AA
1 AA
36850165 TAGTTATTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (16 bp):
AAATATAAAATTAAAA
Found at i:36850355 original size:36 final size:39
Alignment explanation
Indices: 36850293--36850364 Score: 105
Period size: 36 Copynumber: 1.9 Consensus size: 39
36850283 AAAAATAGTT
*
36850293 TTTTTAAAATTCTATTTATCTAATTAAACATTTATTTAA
1 TTTTTAAAATTCTATTTACCTAATTAAACATTTATTTAA
*
36850332 TTTTT-AAATT-T-TTTACCTAATTAAATATTTATT
1 TTTTTAAAATTCTATTTACCTAATTAAACATTTATT
36850365 AAGTTAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
36 20 0.65
37 1 0.03
38 5 0.16
39 5 0.16
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (39 bp):
TTTTTAAAATTCTATTTACCTAATTAAACATTTATTTAA
Found at i:36850741 original size:20 final size:20
Alignment explanation
Indices: 36850697--36850741 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
36850687 TAGTCACTTA
*
36850697 TGTTTGAAACGTTACGTCTT
1 TGTTAGAAACGTTACGTCTT
*
36850717 AGTTAGAAACGTTATCGT-TT
1 TGTTAGAAACGTTA-CGTCTT
36850737 TGTTA
1 TGTTA
36850742 CGAAGTAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.24, C:0.11, G:0.20, T:0.44
Consensus pattern (20 bp):
TGTTAGAAACGTTACGTCTT
Found at i:36852355 original size:23 final size:22
Alignment explanation
Indices: 36852305--36852355 Score: 52
Period size: 21 Copynumber: 2.3 Consensus size: 22
36852295 ATTATTATTT
*
36852305 TAAATATATATAATATAAATTTA
1 TAAA-ATATATAATATAAATATA
36852328 T-AAATATATAAT-TAAGAATATA
1 TAAAATATATAATAT-A-AATATA
36852350 TAAAAT
1 TAAAAT
36852356 GCGTATTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
21 10 0.42
22 8 0.33
23 5 0.21
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (22 bp):
TAAAATATATAATATAAATATA
Found at i:36872493 original size:169 final size:170
Alignment explanation
Indices: 36872214--36872556 Score: 670
Period size: 169 Copynumber: 2.0 Consensus size: 170
36872204 AAAATAACAC
36872214 TAAATAGCAGTATAGAATAGTAGGACTGAATCCATAGGGATTGGTTATCTAATTTTGCCTTTTCT
1 TAAATAGCAGTATAGAATAGTAGGACTGAATCCATAGGGATTGGTTATCTAATTTTGCCTTTTCT
36872279 TGTGACTAGAATTATTGTTGCGGCAATTGTCTTGCCCACGACTCGTGACAAACATGCTG-AAAAA
66 TGTGACTAGAATTATTGTTGCGGCAATTGTCTTGCCCACGACTCGTGACAAACATGCTGAAAAAA
*
36872343 ATAAATAAATCAGGGGAGATGAAAATGTTTGGAAAGTAAA
131 ATAAATAAATCAGGGGAGATGAAAATGTTTGAAAAGTAAA
36872383 TAAATAGCAGTATAGAATAGTAGGACTGAATCCATAGGGATTGGTTATCTAATTTTGCCTTTTCT
1 TAAATAGCAGTATAGAATAGTAGGACTGAATCCATAGGGATTGGTTATCTAATTTTGCCTTTTCT
36872448 TGTGACTAGAATTATTGTTGCGGCAATTGTCTTGCCCACGACTCGTGACAAACATGCTGAAAAAA
66 TGTGACTAGAATTATTGTTGCGGCAATTGTCTTGCCCACGACTCGTGACAAACATGCTGAAAAAA
36872513 ATAAATAAATCAGGGGAGATGAAAATGTTTGAAAAGTAAA
131 ATAAATAAATCAGGGGAGATGAAAATGTTTGAAAAGTAAA
36872553 TAAA
1 TAAA
36872557 GTGAAATTGC
Statistics
Matches: 172, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
169 124 0.72
170 48 0.28
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (170 bp):
TAAATAGCAGTATAGAATAGTAGGACTGAATCCATAGGGATTGGTTATCTAATTTTGCCTTTTCT
TGTGACTAGAATTATTGTTGCGGCAATTGTCTTGCCCACGACTCGTGACAAACATGCTGAAAAAA
ATAAATAAATCAGGGGAGATGAAAATGTTTGAAAAGTAAA
Found at i:36876283 original size:6 final size:6
Alignment explanation
Indices: 36876272--36876304 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
36876262 AGGAATAAGT
*
36876272 AATGAC AATGAC AATGAA AATGA- AATGAC AATG
1 AATGAC AATGAC AATGAC AATGAC AATGAC AATG
36876305 TATACTTATC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.55, C:0.09, G:0.18, T:0.18
Consensus pattern (6 bp):
AATGAC
Found at i:36884734 original size:19 final size:18
Alignment explanation
Indices: 36884710--36884752 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
36884700 ATAATGTTCA
36884710 TATTTTAACAATATTTAAG
1 TATTTT-ACAATATTTAAG
* *
36884729 TATTTTATAATATTTAAT
1 TATTTTACAATATTTAAG
36884747 TATTTT
1 TATTTT
36884753 TGGACAAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.58
Consensus pattern (18 bp):
TATTTTACAATATTTAAG
Found at i:36884987 original size:17 final size:17
Alignment explanation
Indices: 36884965--36885002 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
36884955 TATATAAGGA
* *
36884965 AAACAAAGTACAAAGAT
1 AAACAAAGAACAAAAAT
36884982 AAAC-AAGAACAAAAAT
1 AAACAAAGAACAAAAAT
36884998 AAACA
1 AAACA
36885003 TCAAACAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.71, C:0.13, G:0.08, T:0.08
Consensus pattern (17 bp):
AAACAAAGAACAAAAAT
Found at i:36900275 original size:225 final size:224
Alignment explanation
Indices: 36899871--36900336 Score: 792
Period size: 225 Copynumber: 2.1 Consensus size: 224
36899861 CATCATCCAT
* * *
36899871 GACTATAAACATTAGCAAACTCATAACAAAACCTATATACATGCCACAACCCAAAAAGAGATACA
1 GACTATAAACATTAACAAACTCATAACAAAACCTATATACATGCCACAACCCAAAAAAAGATAAA
*
36899936 AAAGCTACCAAAATAGTTGAATAGTGTGAGCTTTATGGCTGATCCTTCCGATCAGTCCACAACTG
66 AAAGCTACCAAAATAGTTGAATAGTGTGAGCTTTATGGCTGATCCTTCCGATCAGGCCACAACTG
* * *
36900001 TTATCTACAAAATAACGTGAGAAAAATAATAAGCTCAAGTAGTTTAGTAAGATCATAGTGTAATA
131 TTATCTACAAAATAACATGAGAAAAATAATAAGCTCAAATAGCTTAGTAAGATCATAGTGTAATA
36900066 TCTACTTGACTTATTTTAGTTAACATAAG
196 TCTACTTGACTTATTTTAGTTAACATAAG
* *
36900095 GACTATCAACATTAACAAACTCATAACAAAACCTATATGCATGCCACAACCCAAAAAAAGATAAA
1 GACTATAAACATTAACAAACTCATAACAAAACCTATATACATGCCACAACCCAAAAAAAGAT-AA
*
36900160 AAAAGCTACCAAAATAGTTGGATAGTGTGAGCTTTATGGCCT-ATCCTTCCGATCAGGCCACAAC
65 AAAAGCTACCAAAATAGTTGAATAGTGTGAGCTTTATGG-CTGATCCTTCCGATCAGGCCACAAC
36900224 TGTTATCTACAAAATAACATGAGAAAAATAATAAGCTCAAATAGCTTAGTAAGATCATAGTGTAA
129 TGTTATCTACAAAATAACATGAGAAAAATAATAAGCTCAAATAGCTTAGTAAGATCATAGTGTAA
36900289 TATCTACTTGACTTATTTTAGTTAACATAAG
194 TATCTACTTGACTTATTTTAGTTAACATAAG
*
36900320 GACT-TAAAAATATAACA
1 GACTATAAACAT-TAACA
36900337 TGCTAACTAA
Statistics
Matches: 227, Mismatches: 12, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
224 63 0.28
225 162 0.71
226 2 0.01
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.27
Consensus pattern (224 bp):
GACTATAAACATTAACAAACTCATAACAAAACCTATATACATGCCACAACCCAAAAAAAGATAAA
AAAGCTACCAAAATAGTTGAATAGTGTGAGCTTTATGGCTGATCCTTCCGATCAGGCCACAACTG
TTATCTACAAAATAACATGAGAAAAATAATAAGCTCAAATAGCTTAGTAAGATCATAGTGTAATA
TCTACTTGACTTATTTTAGTTAACATAAG
Found at i:36900581 original size:20 final size:20
Alignment explanation
Indices: 36900558--36900619 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
36900548 ATGTAGTTAA
*
36900558 GGGCACCGAACTGCAAACAG
1 GGGCACCGAAGTGCAAACAG
*
36900578 GGGCA-CG-AGTGTGAGAACAG
1 GGGCACCGAAGTG-CA-AACAG
*
36900598 GGGCACCGAAGTGCAAATAG
1 GGGCACCGAAGTGCAAACAG
36900618 GG
1 GG
36900620 ACATTGAAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
18 3 0.09
19 3 0.09
20 21 0.62
21 3 0.09
22 4 0.12
ACGTcount: A:0.32, C:0.21, G:0.39, T:0.08
Consensus pattern (20 bp):
GGGCACCGAAGTGCAAACAG
Found at i:36900643 original size:40 final size:40
Alignment explanation
Indices: 36900549--36900706 Score: 110
Period size: 40 Copynumber: 4.0 Consensus size: 40
36900539 GGCACATACA
* * *
36900549 TGTAGTTAA-GGGCACCGAACTGCAAACAGGGGCA-CG-AG
1 TGTA-TTAAGGGGCACCGAAGTGCAAATAGGGACATCGAAG
** *
36900587 TGTGAGAACAGGGGCACCGAAGTGCAAATAGGGACATTGAAG
1 TGT-ATTA-AGGGGCACCGAAGTGCAAATAGGGACATCGAAG
* * * *
36900629 TGTATTCAGTGGCA-C-AATTGTGCAAATAGGCACACCGAAG
1 TGTATTAAGGGGCACCGAA--GTGCAAATAGGGACATCGAAG
* ** *
36900669 TGTATTAAGGGGCACAGTTGTGCAAACAGGGACATCGA
1 TGTATTAAGGGGCACCGAAGTGCAAATAGGGACATCGA
36900707 GTTATATTCT
Statistics
Matches: 90, Mismatches: 21, Indels: 16
0.71 0.17 0.13
Matches are distributed among these distances:
38 6 0.07
39 3 0.03
40 74 0.82
41 2 0.02
42 5 0.06
ACGTcount: A:0.33, C:0.18, G:0.32, T:0.18
Consensus pattern (40 bp):
TGTATTAAGGGGCACCGAAGTGCAAATAGGGACATCGAAG
Found at i:36906787 original size:46 final size:45
Alignment explanation
Indices: 36906735--36906871 Score: 139
Period size: 46 Copynumber: 2.9 Consensus size: 45
36906725 ATGAGTTTTC
*
36906735 GTATAAGACCATATCGGGATATGGCATCGGTGTGATATGTGCTACT
1 GTATAAGACCATATCGGGATATGGCATCGGTGTGATATGTGATA-T
* * * *
36906781 GTATAAGGCTATATCTGGGATATAGCATCAGTGTGATATGTGATAT
1 GTATAAGACCATATC-GGGATATGGCATCGGTGTGATATGTGATAT
* * * **
36906827 GTAGAAGACCATGATTGGGCTATGGTTTCGGTGTGTGATATGTGA
1 GTATAAGACCAT-ATCGGGATATGGCATC-G-GTGTGATATGTGA
36906872 CAAGGTGCAA
Statistics
Matches: 73, Mismatches: 14, Indels: 6
0.78 0.15 0.06
Matches are distributed among these distances:
46 32 0.44
47 28 0.38
48 13 0.18
ACGTcount: A:0.26, C:0.11, G:0.30, T:0.33
Consensus pattern (45 bp):
GTATAAGACCATATCGGGATATGGCATCGGTGTGATATGTGATAT
Found at i:36908374 original size:18 final size:18
Alignment explanation
Indices: 36908351--36908388 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
36908341 ATTACTGATC
*
36908351 TGAACTGAGTTGAAAGTT
1 TGAACTAAGTTGAAAGTT
36908369 TGAACTAAGTTGAAAGTT
1 TGAACTAAGTTGAAAGTT
36908387 TG
1 TG
36908389 GTAATGCCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.34, C:0.05, G:0.26, T:0.34
Consensus pattern (18 bp):
TGAACTAAGTTGAAAGTT
Found at i:36912333 original size:47 final size:50
Alignment explanation
Indices: 36912264--36912392 Score: 129
Period size: 53 Copynumber: 2.6 Consensus size: 50
36912254 ATTGATGAAA
* * * *
36912264 AAGACCATGGTTGGACTATGGCAACA-TGCGATATG-TGA-TTTTCGTAT
1 AAGACCATAGCTGGGCTATGGCAACAGTGCGATATGATGAGTTTCCGTAT
* *
36912311 AAGACCATAGCTGGGCTATGGCATCAGTGTGATATGATTATGAGTTTCCGTAT
1 AAGACCATAGCTGGGCTATGGCAACAGTGCGATATG---ATGAGTTTCCGTAT
* * *
36912364 AAGACCATATCTGGGTTATGGCATCAGTG
1 AAGACCATAGCTGGGCTATGGCAACAGTG
36912393 TGTTAGCTAG
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
47 22 0.32
48 8 0.12
52 3 0.04
53 35 0.51
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (50 bp):
AAGACCATAGCTGGGCTATGGCAACAGTGCGATATGATGAGTTTCCGTAT
Found at i:36912755 original size:20 final size:20
Alignment explanation
Indices: 36912732--36912804 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
36912722 TCAGTAGTAC
*
36912732 AGATAAGCTGCCAGTATTGT
1 AGATAAACTGCCAGTATTGT
* * *
36912752 AGATAAACTGCTAGTAATGC
1 AGATAAACTGCCAGTATTGT
* * *
36912772 AGACAAGCTACCAGTATTGT
1 AGATAAACTGCCAGTATTGT
36912792 AGATAAACTGCCA
1 AGATAAACTGCCA
36912805 ATAGTGTGGT
Statistics
Matches: 40, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.25
Consensus pattern (20 bp):
AGATAAACTGCCAGTATTGT
Found at i:36912819 original size:40 final size:40
Alignment explanation
Indices: 36912731--36912807 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
36912721 GTCAGTAGTA
* * * *
36912731 CAGATAAGCTGCCAGTATTGTAGATAAACTGCTAGTAATG
1 CAGACAAGCTACCAGTATTGTAGATAAACTGCCAATAATG
36912771 CAGACAAGCTACCAGTATTGTAGATAAACTGCCAATA
1 CAGACAAGCTACCAGTATTGTAGATAAACTGCCAATA
36912808 GTGTGGTCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (40 bp):
CAGACAAGCTACCAGTATTGTAGATAAACTGCCAATAATG
Found at i:36920364 original size:15 final size:15
Alignment explanation
Indices: 36920341--36920371 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
36920331 TGTTTAAAAG
36920341 TTATGATTTTTATTT
1 TTATGATTTTTATTT
*
36920356 TTATTATTTTTATTT
1 TTATGATTTTTATTT
36920371 T
1 T
36920372 GAAAGATATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.77
Consensus pattern (15 bp):
TTATGATTTTTATTT
Found at i:36924898 original size:50 final size:49
Alignment explanation
Indices: 36924836--36925020 Score: 185
Period size: 50 Copynumber: 3.7 Consensus size: 49
36924826 GTGAAAGTCG
*
36924836 TGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAAATGA
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAAATGA
* * * * * *
36924885 TAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGCACC-AGATAGCT
1 T-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAAAT-G-A
* * * * *
36924936 TCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTGA
1 T-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-C-CAAAATGA
*
36924988 TGGTCACA-GTGTAGTACTATGTGTAGGCTACTA
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTA
36925021 GGTGAACCGG
Statistics
Matches: 108, Mismatches: 22, Indels: 11
0.77 0.16 0.08
Matches are distributed among these distances:
49 4 0.04
50 61 0.56
51 39 0.36
52 2 0.02
53 1 0.01
54 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (49 bp):
TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAAATGA
Found at i:36924958 original size:101 final size:101
Alignment explanation
Indices: 36924839--36925020 Score: 287
Period size: 101 Copynumber: 1.8 Consensus size: 101
36924829 AAAGTCGTGG
*
36924839 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA-C-CAAAATGATAGGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGCAAAATGAT-GGTCACA-GTGTAGT
36924902 ACTATGTGCAGGCTACTATGCGCACCAGATAGCTTCGA
64 ACTATGTGCAGGCTACTATGCGCACCAGATAGCTTCGA
* * *
36924940 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTGATGGTCACAGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGCAAAATGATGGTCACAGTGTAGTAC
*
36925005 TATGTGTAGGCTACTA
66 TATGTGCAGGCTACTA
36925021 GGTGAACCGG
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
101 61 0.82
102 7 0.09
103 6 0.08
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGCAAAATGATGGTCACAGTGTAGTAC
TATGTGCAGGCTACTATGCGCACCAGATAGCTTCGA
Found at i:36925117 original size:46 final size:43
Alignment explanation
Indices: 36925026--36925124 Score: 101
Period size: 46 Copynumber: 2.2 Consensus size: 43
36925016 TACTAGGTGA
* *
36925026 ACCGGTATCATTAATTATAAGGTGGTTGCTATATGCTGATCCC
1 ACCGGTATCATTAATTAAAAGGTGGTTGCTATATGCTAATCCC
* * *
36925069 ACCGGATATCATTGATTAGAAAGGGTGGTTGCTGTGTGCTAAAT-CC
1 ACCGG-TATCATTAATTA-AAA-GGTGGTTGCTATATGCT-AATCCC
36925115 ACCGTGTATC
1 ACCG-GTATC
36925125 TGTTACTATT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
43 5 0.11
44 11 0.24
45 2 0.04
46 25 0.54
47 3 0.07
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.32
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTGCTATATGCTAATCCC
Found at i:36927215 original size:22 final size:23
Alignment explanation
Indices: 36927190--36927245 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 23
36927180 GATTACCCAA
*
36927190 TTAAATTAATTC-TATAATTAAT
1 TTAAATTAATGCGTATAATTAAT
*
36927212 TT-AATTCATGCGTATAATTAAT
1 TTAAATTAATGCGTATAATTAAT
*
36927234 TT-AATTCATGCG
1 TTAAATTAATGCG
36927246 ACAACCAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
21 7 0.23
22 24 0.77
ACGTcount: A:0.38, C:0.09, G:0.07, T:0.46
Consensus pattern (23 bp):
TTAAATTAATGCGTATAATTAAT
Found at i:36932497 original size:47 final size:47
Alignment explanation
Indices: 36932445--36932948 Score: 801
Period size: 47 Copynumber: 10.6 Consensus size: 47
36932435 GATAATTGTG
* *
36932445 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36932492 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36932541 ATGTGAAAGTGTATATATATGTAATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36932590 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36932637 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36932686 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36932733 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36932780 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36932829 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
36932876 ATGTGAAAGTGTATATATGTGACAGGGTCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36932923 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
36932949 TCCCGAAGGG
Statistics
Matches: 430, Mismatches: 21, Indels: 12
0.93 0.05 0.03
Matches are distributed among these distances:
47 242 0.56
49 188 0.44
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:36932547 original size:96 final size:96
Alignment explanation
Indices: 36932445--36932893 Score: 762
Period size: 96 Copynumber: 4.7 Consensus size: 96
36932435 GATAATTGTG
36932445 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
36932510 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36932541 ATGTGAAAGTGTATATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
1 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
36932604 ATATGTGATAAGGCCTAATGACCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
36932637 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
1 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
36932700 ATATGTGATAAGGCCTAATAGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
36932733 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
36932798 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
36932829 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
36932894 GTGACAGGGT
Statistics
Matches: 340, Mismatches: 9, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
94 49 0.14
95 2 0.01
96 237 0.70
97 2 0.01
98 50 0.15
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (96 bp):
ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:36932746 original size:143 final size:143
Alignment explanation
Indices: 36932445--36932948 Score: 850
Period size: 143 Copynumber: 3.5 Consensus size: 143
36932435 GATAATTGTG
* *
36932445 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
36932510 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTAATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
36932575 TGGCCGATGTGATGA
129 TGGCCGATGTGATGA
*
36932590 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
36932655 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
36932720 GCCGATGTGATGA
131 GCCGATGTGATGA
36932733 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
36932798 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
36932863 GCCGATGTGATGA
131 GCCGATGTGATGA
* * * * * * * *
36932876 ATGTGAAAGTGTATATATGTGACAGGGTCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
36932939 ATGTGATAAG
66 ATGTGATAAG
36932949 TCCCGAAGGG
Statistics
Matches: 343, Mismatches: 16, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
141 10 0.03
142 1 0.00
143 228 0.66
145 104 0.30
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
GCCGATGTGATGA
Found at i:36942399 original size:11 final size:11
Alignment explanation
Indices: 36942370--36942402 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
36942360 AGTGAAAAAG
36942370 AAAAGTGAG-A
1 AAAAGTGAGAA
36942380 AAAAGTGAGAA
1 AAAAGTGAGAA
*
36942391 AAAAATGAGAA
1 AAAAGTGAGAA
36942402 A
1 A
36942403 TTCCCAATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.67, C:0.00, G:0.24, T:0.09
Consensus pattern (11 bp):
AAAAGTGAGAA
Found at i:36942574 original size:50 final size:51
Alignment explanation
Indices: 36942505--36942645 Score: 205
Period size: 50 Copynumber: 2.8 Consensus size: 51
36942495 GAAAGTGAAG
*
36942505 GTGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGA-A
1 GTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGATA
* * * *
36942555 -TGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATA
1 GTGAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGATA
*
36942606 GTGATGGTCACATGTGTAGTACTATGTGTAGGCTACTATG
1 GTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTATG
36942646 GGAAATGATA
Statistics
Matches: 80, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
49 4 0.05
50 39 0.49
51 33 0.41
52 4 0.05
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.32
Consensus pattern (51 bp):
GTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGATA
Found at i:36945999 original size:38 final size:38
Alignment explanation
Indices: 36945945--36946058 Score: 192
Period size: 38 Copynumber: 3.0 Consensus size: 38
36945935 TATATAATTA
36945945 TACCCCTGATCGCACTTACGTGCCCTGTTGTACTTCGG
1 TACCCCTGATCGCACTTACGTGCCCTGTTGTACTTCGG
* *
36945983 TACCCCTGATCACACTTACGTGCCCTATTGTACTTCGG
1 TACCCCTGATCGCACTTACGTGCCCTGTTGTACTTCGG
*
36946021 TACCCCTGATCGCATTTACGTGCCCCTGTTGTACTTCG
1 TACCCCTGATCGCACTTACGTG-CCCTGTTGTACTTCG
36946059 ATACTCCCGA
Statistics
Matches: 70, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
38 56 0.80
39 14 0.20
ACGTcount: A:0.15, C:0.34, G:0.18, T:0.32
Consensus pattern (38 bp):
TACCCCTGATCGCACTTACGTGCCCTGTTGTACTTCGG
Found at i:36946075 original size:39 final size:38
Alignment explanation
Indices: 36945945--36946076 Score: 169
Period size: 38 Copynumber: 3.4 Consensus size: 38
36945935 TATATAATTA
* *
36945945 TACCCCTGATCGCACTTACGTGCCCTGTTGTACTTCGG
1 TACCCCTGATAGCATTTACGTGCCCTGTTGTACTTCGG
* *
36945983 TACCCCTGATCA-CACTTACGTGCCCTATTGTACTTCGG
1 TACCCCTGAT-AGCATTTACGTGCCCTGTTGTACTTCGG
* *
36946021 TACCCCTGATCGCATTTACGTGCCCCTGTTGTACTTCGA
1 TACCCCTGATAGCATTTACGTG-CCCTGTTGTACTTCGG
36946060 TACTCCC-GATAGCATTT
1 TAC-CCCTGATAGCATTT
36946077 TTGTATCGTG
Statistics
Matches: 83, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
38 54 0.65
39 26 0.31
40 3 0.04
ACGTcount: A:0.17, C:0.33, G:0.17, T:0.33
Consensus pattern (38 bp):
TACCCCTGATAGCATTTACGTGCCCTGTTGTACTTCGG
Found at i:36948533 original size:49 final size:49
Alignment explanation
Indices: 36948479--36948576 Score: 169
Period size: 49 Copynumber: 2.0 Consensus size: 49
36948469 ACACAAAAAG
* * *
36948479 AAAATACATGTTGAATTTACTGAATATGCTATTAAGGTTATAAATCTTA
1 AAAATACATGTTGAATTTACTAAATATACTATTAAGGTTACAAATCTTA
36948528 AAAATACATGTTGAATTTACTAAATATACTATTAAGGTTACAAATCTTA
1 AAAATACATGTTGAATTTACTAAATATACTATTAAGGTTACAAATCTTA
36948577 TAGGTCGGTG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.43, C:0.09, G:0.10, T:0.38
Consensus pattern (49 bp):
AAAATACATGTTGAATTTACTAAATATACTATTAAGGTTACAAATCTTA
Found at i:36952583 original size:39 final size:39
Alignment explanation
Indices: 36952510--36952788 Score: 330
Period size: 39 Copynumber: 7.2 Consensus size: 39
36952500 TATATAATTA
* * * * *
36952510 TACCCCTGATTGCACCTACGCG-CCCTATTGTACTTCGG
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTTGG
* * *
36952548 TACCTCTGATCGCACTTACGTGCCCCTGTTATACTTCGG
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTTGG
* * *
36952587 TACCCCTGATCGCACTTACGTACCCCTATTCTACTTTGG
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTTGG
* **
36952626 TACCCCCGATCATACTTACGTGCCCCTGTTGTACTTTGG
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTTGG
* *
36952665 TACCCCTGATCGCACTTACATG-CCCTGTTGTAATTTGG
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTTGG
*
36952703 TACCCCTGATCGCATTTACGTG-CCCTGTTGTACTTTGG
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTTGG
* * * * * *
36952741 TACCCTTGATTGCACTTACATGCACCTATTGTACTTCGG
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTTGG
36952780 TACCCCTGA
1 TACCCCTGA
36952789 CCGAACTTTT
Statistics
Matches: 206, Mismatches: 33, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
38 86 0.42
39 120 0.58
ACGTcount: A:0.17, C:0.33, G:0.17, T:0.33
Consensus pattern (39 bp):
TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTTGG
Found at i:36952592 original size:19 final size:19
Alignment explanation
Indices: 36952570--36952672 Score: 57
Period size: 19 Copynumber: 5.3 Consensus size: 19
36952560 CACTTACGTG
36952570 CCCCTGTTATACTTCGGTA
1 CCCCTGTTATACTTCGGTA
***
36952589 CCCCTGATCGCACTTAC-GTA
1 CCCCTG-TTATACTT-CGGTA
* * *
36952609 CCCCTATTCTACTTTGGTA
1 CCCCTGTTATACTTCGGTA
* * *
36952628 CCCCCGATCATACTTAC-GTG
1 CCCCTG-TTATACTT-CGGTA
* *
36952648 CCCCTGTTGTACTTTGGTA
1 CCCCTGTTATACTTCGGTA
36952667 CCCCTG
1 CCCCTG
36952673 ATCGCACTTA
Statistics
Matches: 59, Mismatches: 19, Indels: 12
0.66 0.21 0.13
Matches are distributed among these distances:
19 32 0.54
20 26 0.44
21 1 0.02
ACGTcount: A:0.16, C:0.36, G:0.16, T:0.33
Consensus pattern (19 bp):
CCCCTGTTATACTTCGGTA
Found at i:36952702 original size:38 final size:38
Alignment explanation
Indices: 36952510--36952820 Score: 325
Period size: 39 Copynumber: 8.1 Consensus size: 38
36952500 TATATAATTA
* * * * *
36952510 TACCCCTGATTGCACCTACGCGCCCTATTGTACTTCGG
1 TACCCCTGATCGCACTTACGTGCCCTGTTGTACTTTGG
* * *
36952548 TACCTCTGATCGCACTTACGTGCCCCTGTTATACTTCGG
1 TACCCCTGATCGCACTTACGTG-CCCTGTTGTACTTTGG
* * *
36952587 TACCCCTGATCGCACTTACGTACCCCTATTCTACTTTGG
1 TACCCCTGATCGCACTTACGT-GCCCTGTTGTACTTTGG
* **
36952626 TACCCCCGATCATACTTACGTGCCCCTGTTGTACTTTGG
1 TACCCCTGATCGCACTTACGTG-CCCTGTTGTACTTTGG
* *
36952665 TACCCCTGATCGCACTTACATGCCCTGTTGTAATTTGG
1 TACCCCTGATCGCACTTACGTGCCCTGTTGTACTTTGG
*
36952703 TACCCCTGATCGCATTTACGTGCCCTGTTGTACTTTGG
1 TACCCCTGATCGCACTTACGTGCCCTGTTGTACTTTGG
* * * * *
36952741 TACCCTTGATTGCACTTACATGCACCTATTGTACTTCGG
1 TACCCCTGATCGCACTTACGTGC-CCTGTTGTACTTTGG
* * *** * *
36952780 TACCCCTGACCGAACTTTTATGCCCTGTTGGACTTCGG
1 TACCCCTGATCGCACTTACGTGCCCTGTTGTACTTTGG
36952818 TAC
1 TAC
36952821 TCCCAATAGC
Statistics
Matches: 230, Mismatches: 39, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
38 103 0.45
39 127 0.55
ACGTcount: A:0.17, C:0.32, G:0.18, T:0.33
Consensus pattern (38 bp):
TACCCCTGATCGCACTTACGTGCCCTGTTGTACTTTGG
Found at i:36952820 original size:77 final size:77
Alignment explanation
Indices: 36952510--36952820 Score: 322
Period size: 77 Copynumber: 4.0 Consensus size: 77
36952500 TATATAATTA
* * ** * * *
36952510 TACCCCTGATTGCACCTACGCGCCCTATTGTACTTCGGTACCTCTGATCGCACTTACGTGCCCCT
1 TACCCCTGATCGCACTTACATGCCCTATTGTACTTCGGTACCCCTGATCGAACTTACATGCCCCT
*
36952575 GTTATACTTCGG
66 GTTGTACTTCGG
* * * * * *
36952587 TACCCCTGATCGCACTTACGTACCCCTATTCTACTTTGGTACCCCCGATC-ATACTTACGTGCCC
1 TACCCCTGATCGCACTTACAT-GCCCTATTGTACTTCGGTACCCCTGATCGA-ACTTACATGCCC
*
36952651 CTGTTGTACTTTGG
64 CTGTTGTACTTCGG
* * * * * *
36952665 TACCCCTGATCGCACTTACATGCCCTGTTGTAATTTGGTACCCCTGATCGCATTTACGTG-CCCT
1 TACCCCTGATCGCACTTACATGCCCTATTGTACTTCGGTACCCCTGATCGAACTTACATGCCCCT
*
36952729 GTTGTACTTTGG
66 GTTGTACTTCGG
* * * **
36952741 TACCCTTGATTGCACTTACATGCACCTATTGTACTTCGGTACCCCTGACCGAACTTTTATG-CCC
1 TACCCCTGATCGCACTTACATGC-CCTATTGTACTTCGGTACCCCTGATCGAACTTACATGCCCC
*
36952805 TGTTGGACTTCGG
65 TGTTGTACTTCGG
36952818 TAC
1 TAC
36952821 TCCCAATAGC
Statistics
Matches: 198, Mismatches: 32, Indels: 8
0.83 0.13 0.03
Matches are distributed among these distances:
76 37 0.19
77 94 0.47
78 67 0.34
ACGTcount: A:0.17, C:0.32, G:0.18, T:0.33
Consensus pattern (77 bp):
TACCCCTGATCGCACTTACATGCCCTATTGTACTTCGGTACCCCTGATCGAACTTACATGCCCCT
GTTGTACTTCGG
Found at i:36961267 original size:45 final size:45
Alignment explanation
Indices: 36961165--36961348 Score: 248
Period size: 45 Copynumber: 4.1 Consensus size: 45
36961155 AATAATAACA
* * *
36961165 GATACACGGTGG-ATCAGCACATAGC-ACCACCCTTATAGTCAAT
1 GATACCCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
* * *
36961208 GATACTCGGTGGAATCAGCACATAGCAACCATCTTCATAATCAAT
1 GATACCCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
36961253 -AGTACCCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
1 GA-TACCCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
* * *
36961298 GATATCTGGTGGAATCAGCACACAGCAACCACCTTTATAATCAAT
1 GATACCCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
*
36961343 GGTACC
1 GATACC
36961349 TGGTACACGT
Statistics
Matches: 124, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
43 11 0.09
44 14 0.11
45 98 0.79
46 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (45 bp):
GATACCCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
Found at i:36969086 original size:22 final size:21
Alignment explanation
Indices: 36969056--36969097 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
36969046 ACACCAAAAC
* *
36969056 AGGCTTTTAGCGGCTCTTTTTT
1 AGGCCTTTAGC-GCGCTTTTTT
36969078 AGGCCTTTAGCGCGCTTTTT
1 AGGCCTTTAGCGCGCTTTTT
36969098 AGCACCGCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.10, C:0.21, G:0.24, T:0.45
Consensus pattern (21 bp):
AGGCCTTTAGCGCGCTTTTTT
Found at i:36969222 original size:43 final size:43
Alignment explanation
Indices: 36969161--36969412 Score: 283
Period size: 43 Copynumber: 5.9 Consensus size: 43
36969151 GCATTTTTTT
* * *
36969161 ACCTTTAGCAGCGCTTTTCCCATAAACGCCGCTAAAGACCAGG
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAG
*
36969204 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATG
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAG
** ** * *
36969247 ACCTTTAGTAGCG-TATTTTACACAAACGCAGCTAAAGACCATG
1 ACCTTTAGCGGCGCT-TTTCCCACAAACGCCGCTAAAGACCAAG
* *
36969290 ACCTTTAGCGGGGCTTTTCTCACAAACGCCGCTAAAGACCAAG
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAG
** * * *
36969333 ACCTTTAGCGGTACTTTTACCACAAACACCGCTAAAGAACAAG
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAG
* * * *
36969376 ACATTTAGTGGCGC-TTTCTCCAAAAACGCCACTAAAG
1 ACCTTTAGCGGCGCTTTTC-CCACAAACGCCGCTAAAG
36969413 GTCACGAAAA
Statistics
Matches: 177, Mismatches: 29, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
42 4 0.02
43 172 0.97
44 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.22
Consensus pattern (43 bp):
ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAG
Found at i:36969403 original size:129 final size:129
Alignment explanation
Indices: 36969161--36969412 Score: 328
Period size: 129 Copynumber: 2.0 Consensus size: 129
36969151 GCATTTTTTT
* * * *
36969161 ACCTTTAGCAGCGCTTTTCCCATAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCCA
1 ACCTTTAGCAGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCACTTTTACCA
* * * * * *
36969226 CAAACGCCGCTAAAGACCATGACCTTTAGTAGCGTATTTTACACAAACG-CAGCTAAAGACCATG
66 CAAACACCGCTAAAGAACAAGACATTTAGTAGCGTATTCTACAAAAACGCCA-CTAAAGACCATG
* * * *
36969290 ACCTTTAGCGGGGCTTTTCTCACAAACGCCGCTAAAGACCAAGACCTTTAGCGGTACTTTTACCA
1 ACCTTTAGCAGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCACTTTTACCA
* *
36969355 CAAACACCGCTAAAGAACAAGACATTTAGTGGCGCT-TTCTCCAAAAACGCCACTAAAG
66 CAAACACCGCTAAAGAACAAGACATTTAGTAGCG-TATTCTACAAAAACGCCACTAAAG
36969413 GTCACGAAAA
Statistics
Matches: 105, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
129 102 0.97
130 3 0.03
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.22
Consensus pattern (129 bp):
ACCTTTAGCAGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCACTTTTACCA
CAAACACCGCTAAAGAACAAGACATTTAGTAGCGTATTCTACAAAAACGCCACTAAAGACCATG
Found at i:36970347 original size:23 final size:23
Alignment explanation
Indices: 36970320--36970860 Score: 308
Period size: 23 Copynumber: 23.7 Consensus size: 23
36970310 GTATCACTTT
36970320 AACACTTCAATTTACAGCATTTA
1 AACACTTCAATTTACAGCATTTA
* ** *
36970343 AACACCTCAATTTGTAGTACTTT-
1 AACACTTCAATTTACAGCA-TTTA
* *
36970366 AACA-TATCAATTAACAACATTTA
1 AACACT-TCAATTTACAGCATTTA
* * * *
36970389 TACACATCAA-TTATAGCGA-TAA
1 AACACTTCAATTTACAGC-ATTTA
* **
36970411 AACA-TCTCAATTTCCAGCAACTA
1 AACACT-TCAATTTACAGCATTTA
* *
36970434 AACACTTCAATTTGCAGCACTTA
1 AACACTTCAATTTACAGCATTTA
*
36970457 AACACTTCAATTTATAGCATTTA
1 AACACTTCAATTTACAGCATTTA
* * *
36970480 AACACTTAAATTTTCAGCACTTA
1 AACACTTCAATTTACAGCATTTA
* *
36970503 AACA-TATCAATTAACAACATTTA
1 AACACT-TCAATTTACAGCATTTA
* * *
36970526 TACACCTCAA-TTACAGACA-TAA
1 AACACTTCAATTTACAG-CATTTA
* **
36970548 AACATCTT-AATTTCCAGCAACTA
1 AACA-CTTCAATTTACAGCATTTA
* *
36970571 AACACTTCAATTTGCAGCACTTA
1 AACACTTCAATTTACAGCATTTA
* *
36970594 AATACTTCAATTTGCAGCACTTT-
1 AACACTTCAATTTACAGCA-TTTA
* *
36970617 AACA-TATCAATTAACAACATTTA
1 AACACT-TCAATTTACAGCATTTA
* * * *
36970640 TACACCTCAA-TTATAGCGA-TAA
1 AACACTTCAATTTACAGC-ATTTA
* **
36970662 AACA-TCTCAATTTCCAGCAACTA
1 AACACT-TCAATTTACAGCATTTA
* *
36970685 AACACTTCAATTTGCAGCACTTA
1 AACACTTCAATTTACAGCATTTA
* *
36970708 AACACTTCAATTTGCAGCACTTA
1 AACACTTCAATTTACAGCATTTA
* *
36970731 AACA-TATCAATTAACAACATTTA
1 AACACT-TCAATTTACAGCATTTA
* * *
36970754 TACACCTCAA-TTACAGCGA-TAA
1 AACACTTCAATTTACAGC-ATTTA
* * **
36970776 AACA-TCTCATTTTCCAGCAACTA
1 AACACT-TCAATTTACAGCATTTA
* * *
36970799 AATACTTCAATTTGCAGCACTTA
1 AACACTTCAATTTACAGCATTTA
* *
36970822 AACACTTCAATTTATAACATTTA
1 AACACTTCAATTTACAGCATTTA
36970845 AACACTTCAATTTACA
1 AACACTTCAATTTACA
36970861 AATCCACCAT
Statistics
Matches: 389, Mismatches: 97, Indels: 64
0.71 0.18 0.12
Matches are distributed among these distances:
22 67 0.17
23 314 0.81
24 8 0.02
ACGTcount: A:0.40, C:0.23, G:0.05, T:0.31
Consensus pattern (23 bp):
AACACTTCAATTTACAGCATTTA
Found at i:36970560 original size:137 final size:137
Alignment explanation
Indices: 36970314--36970618 Score: 470
Period size: 137 Copynumber: 2.2 Consensus size: 137
36970304 TGGAATGTAT
* * * *
36970314 CACTTTAACACTTCAATTTACAGCATTTAAACACCTCAATTTGTAGTACTTTAACATATCAATTA
1 CACTTAAACACTTCAATTTACAGCATTTAAACACCTAAATTTGTAGCACTTAAACATATCAATTA
*
36970379 ACAACATTTATACACATCAATTATAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAA
66 ACAACATTTATACACATCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAA
36970444 TTTGCAG
131 TTTGCAG
* *
36970451 CACTTAAACACTTCAATTTATAGCATTTAAACACTTAAATTT-TCAGCACTTAAACATATCAATT
1 CACTTAAACACTTCAATTTACAGCATTTAAACACCTAAATTTGT-AGCACTTAAACATATCAATT
* *
36970515 AACAACATTTATACACCTCAATTACAGAC-ATAAAACATCTTAATTTCCAGCAACTAAACACTTC
65 AACAACATTTATACACATCAATTACAG-CGATAAAACATCTCAATTTCCAGCAACTAAACACTTC
36970579 AATTTGCAG
129 AATTTGCAG
* *
36970588 CACTTAAATACTTCAATTTGCAGCACTTTAA
1 CACTTAAACACTTCAATTTACAGCA-TTTAA
36970619 CATATCAATT
Statistics
Matches: 153, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
136 1 0.01
137 146 0.95
138 6 0.04
ACGTcount: A:0.40, C:0.23, G:0.05, T:0.32
Consensus pattern (137 bp):
CACTTAAACACTTCAATTTACAGCATTTAAACACCTAAATTTGTAGCACTTAAACATATCAATTA
ACAACATTTATACACATCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAA
TTTGCAG
Found at i:36970650 original size:137 final size:136
Alignment explanation
Indices: 36970314--36970758 Score: 429
Period size: 137 Copynumber: 3.2 Consensus size: 136
36970304 TGGAATGTAT
* * * *** ** * *
36970314 CACTTTAACACTTCAATTTACAGCATTTAAACACCTCAATTTGTAGTACTTTAACATATCAATTA
1 CACTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTAACAACACTTAAACACATCAATTA
* * *
36970379 ACAACATTTATACACATCAATTATAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAA
66 ACAACATTTATACACCTCAATTACAGC-ATAAAACATCTTAATTTCCAGCAACTAAACACTTCAA
36970444 TTTGCAG
130 TTTGCAG
* ** * *
36970451 CACTTAAACACTTCAATTTATAGCATTTAAACACTTAAATTTTCAGCACTTAAACATATCAATTA
1 CACTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTAACAACACTTAAACACATCAATTA
36970516 ACAACATTTATACACCTCAATTACAGACATAAAACATCTTAATTTCCAGCAACTAAACACTTCAA
66 ACAACATTTATACACCTCAATTACAG-CATAAAACATCTTAATTTCCAGCAACTAAACACTTCAA
36970581 TTTGCAG
130 TTTGCAG
* * * * * *
36970588 CACTTAAATACTTCAATTTGCAGCACTTT-AACA-TATCAATTAACAACATTTATACACCTCAAT
1 CACTTAAACACTTCAATTTACAGCA-TTTAAACACT-TAAATTAACAACACTTAAACACATCAAT
* * * * * * *
36970651 T-ATAGCGA-TAAAACATCTCAATTTCCAGCA-ACTAAACA-CTTCAATTTGCAGC-ACTTAAAC
64 TAACAAC-ATTTATACACCTCAA-TTACAGCATA--AAACATCTT-AATTTCCAGCAAC-TAAAC
36970711 ACTTCAATTTGCAG
123 ACTTCAATTTGCAG
* * *
36970725 CACTTAAACA-TATCAATTAACAACATTTATACAC
1 CACTTAAACACT-TCAATTTACAGCATTTAAACAC
36970759 CTCAATTACA
Statistics
Matches: 262, Mismatches: 34, Indels: 23
0.82 0.11 0.07
Matches are distributed among these distances:
135 1 0.00
136 25 0.10
137 232 0.89
138 4 0.02
ACGTcount: A:0.40, C:0.23, G:0.05, T:0.31
Consensus pattern (136 bp):
CACTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTAACAACACTTAAACACATCAATTA
ACAACATTTATACACCTCAATTACAGCATAAAACATCTTAATTTCCAGCAACTAAACACTTCAAT
TTGCAG
Found at i:36970856 original size:114 final size:114
Alignment explanation
Indices: 36970440--36970834 Score: 650
Period size: 114 Copynumber: 3.5 Consensus size: 114
36970430 ACTAAACACT
* ** * * *
36970440 TCAATTTGCAGC-ACTTAAACACTTCAATTTATAGCATTTAAACACTTAAATTTTCAGCACTTAA
1 TCAATTTCCAGCAAC-TAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTGCAGCACTTAA
36970504 ACATATCAATTAACAACATTTATACACCTCAATTACAGAC-ATAAAACATC
65 ACATATCAATTAACAACATTTATACACCTCAATTACAG-CGATAAAACATC
* * *
36970554 TTAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAATACTTCAATTTGCAGCACTTTAA
1 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTGCAGCACTTAAA
*
36970619 CATATCAATTAACAACATTTATACACCTCAATTATAGCGATAAAACATC
66 CATATCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATC
36970668 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTGCAGCACTTAAA
1 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTGCAGCACTTAAA
36970733 CATATCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATC
66 CATATCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATC
* *
36970782 TCATTTTCCAGCAACTAAATACTTCAATTTGCAGCACTTAAACACTTCAATTT
1 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTT
36970835 ATAACATTTA
Statistics
Matches: 263, Mismatches: 16, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
113 1 0.00
114 260 0.99
115 2 0.01
ACGTcount: A:0.40, C:0.24, G:0.06, T:0.31
Consensus pattern (114 bp):
TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTGCAGCACTTAAA
CATATCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATC
Found at i:36975535 original size:41 final size:41
Alignment explanation
Indices: 36975490--36975733 Score: 335
Period size: 41 Copynumber: 6.0 Consensus size: 41
36975480 TCAATTCGGG
* * *
36975490 ATTAGCGGCGCTTTTTAAAAAATGCCACTAAAGATCCGAGC
1 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGAGC
* * * * *
36975531 ATTAGCGGTGCTTTTTCAAAAACGTCACTACAGACCCGAGC
1 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGAGC
*
36975572 ATTAGCGGCACTTTTTCAAAAATGCCGCTAAAGACCCGAGC
1 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGAGC
* * *
36975613 ATTAGCGGTGCTTTTTCAAAAACGCCGCGAAAGACCCGAGC
1 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGAGC
*
36975654 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGACC
1 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGAGC
* * * *
36975695 AATAGCGGCGCTTTTTCAAAAACGCAGCTAAAGCCCCGA
1 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGA
36975734 AAGGTCAAAA
Statistics
Matches: 179, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 179 1.00
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (41 bp):
ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGAGC
Found at i:36975733 original size:82 final size:82
Alignment explanation
Indices: 36975490--36975733 Score: 373
Period size: 82 Copynumber: 3.0 Consensus size: 82
36975480 TCAATTCGGG
* * *
36975490 ATTAGCGGCGCTTTTTAAAAAATGCCACTAAAGATCCGAGCATTAGCGGTGCTTTTTCAAAAACG
1 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGAGCATTAGCGGTGCTTTTTCAAAAACG
*
36975555 TCA-CTACAGACCCGAGC
66 -CAGCTAAAGACCCGAGC
*
36975572 ATTAGCGGCACTTTTTCAAAAATGCCGCTAAAGACCCGAGCATTAGCGGTGCTTTTTCAAAAACG
1 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGAGCATTAGCGGTGCTTTTTCAAAAACG
* *
36975637 CCGCGAAAGACCCGAGC
66 CAGCTAAAGACCCGAGC
* * *
36975654 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGACCAATAGCGGCGCTTTTTCAAAAACG
1 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGAGCATTAGCGGTGCTTTTTCAAAAACG
*
36975719 CAGCTAAAGCCCCGA
66 CAGCTAAAGACCCGA
36975734 AAGGTCAAAA
Statistics
Matches: 147, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
81 1 0.01
82 146 0.99
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (82 bp):
ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGAGCATTAGCGGTGCTTTTTCAAAAACG
CAGCTAAAGACCCGAGC
Found at i:36975814 original size:40 final size:39
Alignment explanation
Indices: 36975768--36975860 Score: 100
Period size: 39 Copynumber: 2.3 Consensus size: 39
36975758 GCTTAGGTTA
*
36975768 TTTGCGGCGTTTTTCCAAAAAACGC-CGCTAATGCTC-ATTT
1 TTTGCGGC-TTTTTAC-AAAAA-GCACGCTAATGCTCGATTT
**
36975808 TTTGCGGCTTTTTACGTAAAGCACGCTAATGCTCGATTT
1 TTTGCGGCTTTTTACAAAAAGCACGCTAATGCTCGATTT
*
36975847 TTAGCGGCATTTTT
1 TTTGCGGC-TTTTT
36975861 TATCCAATCG
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
37 2 0.04
38 14 0.30
39 17 0.37
40 13 0.28
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (39 bp):
TTTGCGGCTTTTTACAAAAAGCACGCTAATGCTCGATTT
Found at i:36979516 original size:41 final size:41
Alignment explanation
Indices: 36979449--36979750 Score: 319
Period size: 41 Copynumber: 7.4 Consensus size: 41
36979439 TGTAAACGGA
* * *
36979449 GGCACGTATGTGCAATTCAGGGGTACCAAAGTACAAATAGG
1 GGCACGTAAGTGCAATTTAGGGGTACCGAAGTACAAATAGG
* * * *
36979490 GGAACGCAAGTGCAATTTAGGAGTACCAAAGTACAACA-A-G
1 GGCACGTAAGTGCAATTTAGGGGTACCGAAGTACAA-ATAGG
* * *
36979530 GGCACGCAAGTGCAATTCAAGGGTACCGAAGTACAAATAGG
1 GGCACGTAAGTGCAATTTAGGGGTACCGAAGTACAAATAGG
* * * * *
36979571 GGCACATTAGTGTAATTTAGGGGCACCGTAGTACAAA-AGGG
1 GGCACGTAAGTGCAATTTAGGGGTACCGAAGTACAAATA-GG
* * * * *
36979612 GGCACGTAACTGTAATTCTA-GGGTATCGAATTACAAATAGA
1 GGCACGTAAGTGCAATT-TAGGGGTACCGAAGTACAAATAGG
* *
36979653 GGCA-GATAAGTGCAATTTAGGGGTACCGAAGTACAAACATG
1 GGCACG-TAAGTGCAATTTAGGGGTACCGAAGTACAAATAGG
*
36979694 GGCACGTAAATGCAATTTAGGGGTACCGAAGTAC-AATAGG
1 GGCACGTAAGTGCAATTTAGGGGTACCGAAGTACAAATAGG
36979734 GGCACGTAAGTGCAATT
1 GGCACGTAAGTGCAATT
36979751 CAAGGTATAA
Statistics
Matches: 215, Mismatches: 37, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
39 1 0.00
40 57 0.27
41 152 0.71
42 5 0.02
ACGTcount: A:0.36, C:0.16, G:0.28, T:0.20
Consensus pattern (41 bp):
GGCACGTAAGTGCAATTTAGGGGTACCGAAGTACAAATAGG
Found at i:36979521 original size:21 final size:21
Alignment explanation
Indices: 36979458--36979521 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 21
36979448 AGGCACGTAT
*
36979458 GTGCAATTCAGGGGTACCAAA
1 GTGCAATTTAGGGGTACCAAA
* * *
36979479 GTACAA-ATAGGGGAACGC-AA
1 GTGCAATTTAGGGGTAC-CAAA
*
36979499 GTGCAATTTAGGAGTACCAAA
1 GTGCAATTTAGGGGTACCAAA
36979520 GT
1 GT
36979522 ACAACAAGGG
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
20 15 0.47
21 17 0.53
ACGTcount: A:0.38, C:0.16, G:0.28, T:0.19
Consensus pattern (21 bp):
GTGCAATTTAGGGGTACCAAA
Found at i:36981232 original size:53 final size:53
Alignment explanation
Indices: 36981152--36981257 Score: 194
Period size: 53 Copynumber: 2.0 Consensus size: 53
36981142 AATGACCTGA
*
36981152 GGGACTGAACTAGACCCATCATAACATGCATATAGGGGTCTTTTCTAGGCATC
1 GGGACTCAACTAGACCCATCATAACATGCATATAGGGGTCTTTTCTAGGCATC
*
36981205 GGGACTCAACTAGACCTATCATAACATGCATATAGGGGTCTTTTCTAGGCATC
1 GGGACTCAACTAGACCCATCATAACATGCATATAGGGGTCTTTTCTAGGCATC
36981258 CCATGTCTAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (53 bp):
GGGACTCAACTAGACCCATCATAACATGCATATAGGGGTCTTTTCTAGGCATC
Found at i:36991129 original size:48 final size:48
Alignment explanation
Indices: 36991068--36991164 Score: 158
Period size: 48 Copynumber: 2.0 Consensus size: 48
36991058 TAAATTTTTA
* *
36991068 AAAAGAAAAACAACAGCAGAAATGGAAACTTACCAACAACACATATCC
1 AAAAGAAAAACAACAACAGAAATGGAAACTTACCAACAAAACATATCC
* *
36991116 AAAATAAAAACAACAACAGAAATGGAAACTTACCAACAAAACATCTCC
1 AAAAGAAAAACAACAACAGAAATGGAAACTTACCAACAAAACATATCC
36991164 A
1 A
36991165 CTCCCCTTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.58, C:0.23, G:0.08, T:0.11
Consensus pattern (48 bp):
AAAAGAAAAACAACAACAGAAATGGAAACTTACCAACAAAACATATCC
Found at i:37010004 original size:27 final size:27
Alignment explanation
Indices: 37009974--37010147 Score: 188
Period size: 27 Copynumber: 6.4 Consensus size: 27
37009964 TTGTACAGCG
*
37009974 CTAAGTGTGCGATTTGACTATGTTGCA
1 CTAAGTGTGCGATTTGACTATGTAGCA
** *
37010001 CTAAGTGTGCGAAATGAATATG-ATGCA
1 CTAAGTGTGCGATTTGACTATGTA-GCA
* * * **
37010028 CTAAGTGTGTGAATTGACCATGCGGCA
1 CTAAGTGTGCGATTTGACTATGTAGCA
37010055 CTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGA-TTTGACTATGTAGCA
* *
37010083 CTAAGTGTGCGATTTGATTACGTAGCA
1 CTAAGTGTGCGATTTGACTATGTAGCA
* * *
37010110 CTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGATTTGACTATGTAGCA
*
37010137 CTGAGTGTGCG
1 CTAAGTGTGCG
37010148 GACTCAATAT
Statistics
Matches: 124, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 101 0.81
28 23 0.19
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
CTAAGTGTGCGATTTGACTATGTAGCA
Found at i:37010138 original size:82 final size:81
Alignment explanation
Indices: 37009967--37010147 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
37009957 GATTAAATTG
* * *
37009967 TACAGCGCTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
*
37010032 GTGTGTGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37010048 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37010112 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37010130 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37010148 GACTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 17 0.21
82 65 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37018185 original size:27 final size:27
Alignment explanation
Indices: 37018155--37018328 Score: 188
Period size: 27 Copynumber: 6.4 Consensus size: 27
37018145 TTGTACAGCG
*
37018155 CTAAGTGTGCGATTTGACTATGTTGCA
1 CTAAGTGTGCGATTTGACTATGTAGCA
** *
37018182 CTAAGTGTGCGAAATGAATATG-ATGCA
1 CTAAGTGTGCGATTTGACTATGTA-GCA
* * * **
37018209 CTAAGTGTGTGAATTGACCATGCGGCA
1 CTAAGTGTGCGATTTGACTATGTAGCA
37018236 CTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGA-TTTGACTATGTAGCA
* *
37018264 CTAAGTGTGCGATTTGATTACGTAGCA
1 CTAAGTGTGCGATTTGACTATGTAGCA
* * *
37018291 CTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGATTTGACTATGTAGCA
*
37018318 CTGAGTGTGCG
1 CTAAGTGTGCG
37018329 GACTCAATAT
Statistics
Matches: 124, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 101 0.81
28 23 0.19
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
CTAAGTGTGCGATTTGACTATGTAGCA
Found at i:37018319 original size:82 final size:81
Alignment explanation
Indices: 37018148--37018328 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
37018138 GATTAAATTG
* * *
37018148 TACAGCGCTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
*
37018213 GTGTGTGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37018229 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37018293 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37018311 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37018329 GACTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 17 0.21
82 65 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37032457 original size:40 final size:40
Alignment explanation
Indices: 37032225--37032450 Score: 266
Period size: 40 Copynumber: 5.7 Consensus size: 40
37032215 TTGAATGATG
* * * *
37032225 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
37032265 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* *
37032306 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGA-TATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGT-TACTAAA
37032346 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37032385 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
37032426 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37032451 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
39 34 0.21
40 83 0.50
41 48 0.29
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37032473 original size:79 final size:79
Alignment explanation
Indices: 37032278--37032483 Score: 199
Period size: 79 Copynumber: 2.6 Consensus size: 79
37032268 GGACTAAGAT
** * *
37032278 CCGAAGGCATTTGTGCGAGATACTAATATCCG-GACTAAGAT-CCGAAGGCATTTGTGCGATATA
1 CCGAAGGCATTTGAACGAGTTACTAA-ATCCGAG-TTAA-ATCCCGAAGGCATTTGTGCGATATA
*
37032341 CTAATTCCGGGCTAAGC
63 CTAATACCGGGCTAAGC
** * *
37032358 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGT-TACT
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGAGTTAAATCCCGAAGGCATTTGTGCGA-TATACT
*
37032422 ACA-ACCGGGCTATGTC
65 A-ATACCGGGCTAAG-C
* *
37032438 CCGAAGGCATTTGAACGAG-TAGCTATATCC-AGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCCGAGTTAAATCCCGAAGG
37032484 TACGTGATTT
Statistics
Matches: 109, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
78 1 0.01
79 55 0.50
80 53 0.49
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCCGAGTTAAATCCCGAAGGCATTTGTGCGATATACTA
ATACCGGGCTAAGC
Found at i:37034149 original size:50 final size:50
Alignment explanation
Indices: 37034079--37035035 Score: 893
Period size: 50 Copynumber: 19.2 Consensus size: 50
37034069 TAACTTCAAT
* * * **
37034079 CTGCAACGTC-GGAGAAGTAAGATTCGCTGTTGTAGCTTTAACCTGCTTCA
1 CTGCAATGTCAGG-GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTCA
* *
37034129 CTGCAATGTCGGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTCCA
1 CTGCAATGTCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTCA
* ** * * *
37034179 CTACACCGCCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTATTTAA
1 CTGCAATGTCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTCA
* * * * * *
37034229 CTGCAATGTCGGGGTAGCAAGATTTGCTGTTGTAGCTTCAATCTGTTCCA
1 CTGCAATGTCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTCA
* ** * *
37034279 CTACACCGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAA
1 CTGCAATGTCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTCA
* * * * * * *
37034329 TTGTAATGTCGGGGAAGCAAGATTCGCTGATGTAGCTTCAATCTGTTCCA
1 CTGCAATGTCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTCA
* * * *
37034379 CTACACTGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAA
1 CTGCAATGTCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTCA
* * * * * *
37034429 CTGCAATGTTAGCGAAGCAAGATTCGTTGTTGTAGCTTCAATCTGTTCCA
1 CTGCAATGTCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTCA
* * * * * * * *
37034479 GTACACTGCCAAGGAAATAAGATTCGCTGTTGTAGCTTTAATCTATTTAA
1 CTGCAATGTCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTCA
* * * *
37034529 CTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCA
1 CTGCAATGTCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTCA
* ** * * * *
37034579 CTACACCGCCAGGGAAGTAAGGTTCGCTGTTATAGCTTCAATCTATTTAA
1 CTGCAATGTCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTCA
* *
37034629 CTGCAATGTC-GAGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTTCA
1 CTGCAATGTCAG-GGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTCA
* ** * * * *
37034679 CTACACCGCCAGGGAAGTAAGATTCGTTCTTGTAGCTTCAATCTATTTAA
1 CTGCAATGTCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTCA
* * * *
37034729 CTGCAATGTC-GAGGAAGCAAGATTCGTTGTTGTAGCTTCAATCTGTTCCA
1 CTGCAATGTCAG-GGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTCA
* ** * * *
37034779 CTACACCGCCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTATTTAA
1 CTGCAATGTCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTCA
* * * * * * *
37034829 TTGCAAAGTCGGGGAAGCAAGATTCGCTGTTATAGCTTCAATCTGTTCCA
1 CTGCAATGTCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTCA
* ** *
37034879 CTAC-ACCTCTAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAA
1 CTGCAATGTC-AGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTCA
* * * *
37034929 CTGCAATGTC-GAGGAAGTAAGATTCGCGGTTCTAGC-TCAATCTGTTCCA
1 CTGCAATGTCAG-GGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTCA
* ** * * * *
37034978 CTACACCG-CTAGGGAAGTAAGATTTGCTGTTGTATCTTCAATCTGTTCCA
1 CTGCAATGTC-AGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTCA
*
37035028 CTGTAATG
1 CTGCAATG
37035036 CCAAAGAGAT
Statistics
Matches: 711, Mismatches: 185, Indels: 22
0.77 0.20 0.02
Matches are distributed among these distances:
48 1 0.00
49 41 0.06
50 662 0.93
51 7 0.01
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.32
Consensus pattern (50 bp):
CTGCAATGTCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTCA
Found at i:37034265 original size:100 final size:100
Alignment explanation
Indices: 37034092--37035021 Score: 1457
Period size: 100 Copynumber: 9.3 Consensus size: 100
37034082 CAACGTCGGA
* * ** * *
37034092 GAAGTAAGATTCGCTGTTGTAGCTTTAACCTGCTTCACTGCAATGTCGGGGAAGTAAGATTCGCT
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTCGCT
*
37034157 GTTGTAGCTTCAATCTATTCCACTACACCGCCAGG
66 GTTGTAGCTTCAATCTGTTCCACTACACCGCCAGG
* * *
37034192 GAAGTAAGATTCACTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGTAGCAAGATTTGCT
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTCGCT
37034257 GTTGTAGCTTCAATCTGTTCCACTACACCGCCAGG
66 GTTGTAGCTTCAATCTGTTCCACTACACCGCCAGG
* *
37034292 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAATTGTAATGTCGGGGAAGCAAGATTCGCT
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTCGCT
* *
37034357 GATGTAGCTTCAATCTGTTCCACTACACTGCCAGG
66 GTTGTAGCTTCAATCTGTTCCACTACACCGCCAGG
** * *
37034392 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTTAGCGAAGCAAGATTCGTT
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTCGCT
* * *
37034457 GTTGTAGCTTCAATCTGTTCCAGTACACTGCCAAG
66 GTTGTAGCTTCAATCTGTTCCACTACACCGCCAGG
* *
37034492 GAAATAAGATTCGCTGTTGTAGCTTTAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTCGCT
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTCGCT
37034557 GTTGTAGCTTCAATCTGTTCCACTACACCGCCAGG
66 GTTGTAGCTTCAATCTGTTCCACTACACCGCCAGG
* * *
37034592 GAAGTAAGGTTCGCTGTTATAGCTTCAATCTATTTAACTGCAATGTCGAGGAAGCAAGATTCGCT
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTCGCT
*
37034657 GTTGTAGCTTCAATCTGTTTCACTACACCGCCAGG
66 GTTGTAGCTTCAATCTGTTCCACTACACCGCCAGG
* * * *
37034692 GAAGTAAGATTCGTTCTTGTAGCTTCAATCTATTTAACTGCAATGTCGAGGAAGCAAGATTCGTT
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTCGCT
37034757 GTTGTAGCTTCAATCTGTTCCACTACACCGCCAGG
66 GTTGTAGCTTCAATCTGTTCCACTACACCGCCAGG
* * *
37034792 GAAGTAAGATTCACTGTTGTAGCTTCAATCTATTTAATTGCAAAGTCGGGGAAGCAAGATTCGCT
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTCGCT
* * *
37034857 GTTATAGCTTCAATCTGTTCCACTACACCTCTAGG
66 GTTGTAGCTTCAATCTGTTCCACTACACCGCCAGG
* * *
37034892 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGAGGAAGTAAGATTCGCG
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTCGCT
* *
37034957 GTTCTAGC-TCAATCTGTTCCACTACACCGCTAGG
66 GTTGTAGCTTCAATCTGTTCCACTACACCGCCAGG
* *
37034991 GAAGTAAGATTTGCTGTTGTATCTTCAATCT
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCT
37035022 GTTCCACTGT
Statistics
Matches: 763, Mismatches: 67, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
99 54 0.07
100 709 0.93
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (100 bp):
GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTCGCT
GTTGTAGCTTCAATCTGTTCCACTACACCGCCAGG
Found at i:37039016 original size:25 final size:27
Alignment explanation
Indices: 37038982--37039047 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
37038972 ACATGTATGT
*
37038982 TCACACGAGCTGT-AAATTA-AAATAC
1 TCACACGAGCTGTGAAAATAGAAATAC
***
37039007 TCACACGAGCTGTGAAAATAGGCCTAC
1 TCACACGAGCTGTGAAAATAGAAATAC
37039034 TCACACGAGCTGTG
1 TCACACGAGCTGTG
37039048 GGTCAGAACG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 13 0.37
26 5 0.14
27 17 0.49
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.21
Consensus pattern (27 bp):
TCACACGAGCTGTGAAAATAGAAATAC
Found at i:37041853 original size:50 final size:50
Alignment explanation
Indices: 37041784--37041975 Score: 213
Period size: 50 Copynumber: 3.7 Consensus size: 50
37041774 GTACTACCAG
* * * ** *
37041784 TGCCATATCCCAGATATGGTCTTATATGGGAGTTCTCATATCGGTGCCCA
1 TGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAA
* *
37041834 TGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCCAA
1 TGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAA
* * *
37041884 CGCCATGTCCCAGACATGATCTTACATGGGACCTCTCATAACCTCAACGATGCCAA
1 TGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--T---CGGTGCCAA
* *
37041940 TGCCATGTCCCAGACATGGTCGTACATGGGATCTCT
1 TGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
37041976 TTACCCAAAT
Statistics
Matches: 119, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
50 78 0.66
53 1 0.01
56 40 0.34
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (50 bp):
TGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAA
Found at i:37041945 original size:56 final size:50
Alignment explanation
Indices: 37041728--37041975 Score: 205
Period size: 50 Copynumber: 4.9 Consensus size: 50
37041718 TGATAATAAC
* ** ** *
37041728 ATGCCAAAGCCATGTCAAAGACATGGTCTTACATGGGATGT-TC--CTTG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
* * * * * ** *
37041775 TACTACCAGTGCCATATCCCAGATATGGTCTTATATGGGAGTTCTCATATCG
1 -A-TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
* * *
37041827 GTGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
* * *
37041877 GTGCCAACGCCATGTCCCAGACATGATCTTACATGGGACCTCTCATAACCTCAACG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT---CT---CG
* *
37041933 ATGCCAATGCCATGTCCCAGACATGGTCGTACATGGGATCTCT
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
37041976 TTACCCAAAT
Statistics
Matches: 158, Mismatches: 32, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
48 1 0.01
49 30 0.19
50 83 0.53
52 2 0.01
53 2 0.01
56 40 0.25
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.26
Consensus pattern (50 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
Found at i:37049470 original size:49 final size:50
Alignment explanation
Indices: 37049318--37049498 Score: 154
Period size: 49 Copynumber: 3.7 Consensus size: 50
37049308 ATGTCAAACA
* ** * ** * *
37049318 CATGTCCCAGACATGGTCTTACATGGGATGTTTC-T-TGTACTGCCAATGT
1 CATGTCCCAGACATGGTCTTACAGGGGACCTCTCATAT-TGGTGCCCATGC
* * * * ** *
37049367 CATATCCTAGATATGGTCTTACATGGGAGTTCTCATATTGGTGCCCATGT
1 CATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATTGGTGCCCATGC
*
37049417 CATGTCCCAGACATGGTCTTAC-GGGGACCTCTCATCTTGGTG-CCATTGC
1 CATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATTGGTGCCCA-TGC
* *
37049466 CATGTCCCAGACATGGTCTTACATGGGATCTCT
1 CATGTCCCAGACATGGTCTTACAGGGGACCTCT
37049499 TTACCCAAAT
Statistics
Matches: 109, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
48 3 0.03
49 68 0.62
50 37 0.34
51 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.33
Consensus pattern (50 bp):
CATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATTGGTGCCCATGC
Found at i:37053824 original size:26 final size:27
Alignment explanation
Indices: 37053782--37053832 Score: 63
Period size: 26 Copynumber: 1.9 Consensus size: 27
37053772 TTTGCGAAAA
37053782 ACTCTATAAGGAACG-CCTTCGTGGCTC
1 ACTCTATAAGGAACGCCCTT-GTGGCTC
37053809 ACTCT-TAA-GAATCGCCCTTGTGGC
1 ACTCTATAAGGAA-CGCCCTTGTGGC
37053833 GAACAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
25 3 0.14
26 10 0.45
27 9 0.41
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (27 bp):
ACTCTATAAGGAACGCCCTTGTGGCTC
Found at i:37064402 original size:3 final size:3
Alignment explanation
Indices: 37064394--37064427 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
37064384 AATGTACATA
37064394 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
37064428 TTTTAGTTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:37065309 original size:20 final size:21
Alignment explanation
Indices: 37065272--37065312 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
37065262 AAAATAGGCT
37065272 TTTAGCGGCGCTTTTTTTAGCC
1 TTTAGCGGCGC-TTTTTTAGCC
37065294 TTTAGCGGCG-TTTTTTAGC
1 TTTAGCGGCGCTTTTTTAGC
37065313 ACCGCTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.47
22 10 0.53
ACGTcount: A:0.10, C:0.20, G:0.24, T:0.46
Consensus pattern (21 bp):
TTTAGCGGCGCTTTTTTAGCC
Done.