Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 119 of 240
Found at i:37065398 original size:43 final size:43
Alignment explanation
Indices: 37065337--37065558 Score: 229
Period size: 43 Copynumber: 5.2 Consensus size: 43
37065327 TTGCGGCACT
37065337 TGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGAACA
1 TGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGAACA
* * *
37065380 TGACCTTTAGTGGCGC-TTTCACCACAAACGCCGCTAAAGACCA
1 TGACCTTTAGCGGCGCTTTTC-TCACAAACGCCGCTAAAGAACA
* **
37065423 AGACCTTTAGCGGCGCTTTTC-C-CATAACGCCGCTAAAGCCCA
1 TGACCTTTAGCGGCGCTTTTCTCACA-AACGCCGCTAAAGAACA
* * * *
37065465 TGACCTTTAGCGACGCTTTTTGTCACAAACGCCGCTATAGATCA
1 TGACCTTTAGCGGCGC-TTTTCTCACAAACGCCGCTAAAGAACA
* ** * * *
37065509 -AACCTTTAGCGATGCTTCTCACAAAAACGCCGCTAAA-AACA
1 TGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGAACA
*
37065550 TAACCTTTA
1 TGACCTTTA
37065559 AAAAATTTAT
Statistics
Matches: 152, Mismatches: 20, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
41 5 0.03
42 60 0.39
43 66 0.43
44 19 0.12
45 2 0.01
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.24
Consensus pattern (43 bp):
TGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGAACA
Found at i:37065469 original size:85 final size:87
Alignment explanation
Indices: 37065338--37065558 Score: 263
Period size: 85 Copynumber: 2.6 Consensus size: 87
37065328 TGCGGCACTT
* *
37065338 GACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGAACATGACCTTTAGTGGCGC-TTTCAC
1 GACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTTCAC
37065402 CACAAACGCCGCTAAAGACCAA
66 CACAAACGCCGCTAAAGACCAA
** **
37065424 GACCTTTAGCGGCGCTTTTC-C-CATAACGCCGCTAAAGCCCATGACCTTTAGCGACGCTTTTTG
1 GACCTTTAGCGGCGCTTTTCTCACA-AACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTTCA
* * *
37065487 TCACAAACGCCGCTATAGATCAA
65 CCACAAACGCCGCTAAAGACCAA
** * * * *
37065510 -ACCTTTAGCGATGCTTCTCACAAAAACGCCGCTAAA-AACATAACCTTTA
1 GACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGAACATGACCTTTA
37065559 AAAAATTTAT
Statistics
Matches: 115, Mismatches: 16, Indels: 9
0.82 0.11 0.06
Matches are distributed among these distances:
84 2 0.02
85 56 0.49
86 56 0.49
87 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.24
Consensus pattern (87 bp):
GACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTTCAC
CACAAACGCCGCTAAAGACCAA
Found at i:37067586 original size:15 final size:15
Alignment explanation
Indices: 37067566--37067595 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
37067556 GCATGGACAC
37067566 AAAAAATTCAGACCA
1 AAAAAATTCAGACCA
37067581 AAAAAATTCAGACCA
1 AAAAAATTCAGACCA
37067596 TATGGCTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.20, G:0.07, T:0.13
Consensus pattern (15 bp):
AAAAAATTCAGACCA
Found at i:37070468 original size:7 final size:7
Alignment explanation
Indices: 37070410--37070469 Score: 59
Period size: 7 Copynumber: 8.6 Consensus size: 7
37070400 AAAACATAAA
37070410 CCCTAAAC
1 CCCT-AAC
37070418 CCC-AAC
1 CCCTAAC
*
37070424 TCCTAAC
1 CCCTAAC
*
37070431 GCCTAAC
1 CCCTAAC
*
37070438 GCCTAAC
1 CCCTAAC
*
37070445 CCTTAAC
1 CCCTAAC
*
37070452 CTCTAAC
1 CCCTAAC
37070459 CCCTAAC
1 CCCTAAC
37070466 CCCT
1 CCCT
37070470 CTTTTACAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
6 5 0.11
7 36 0.82
8 3 0.07
ACGTcount: A:0.28, C:0.50, G:0.03, T:0.18
Consensus pattern (7 bp):
CCCTAAC
Found at i:37070753 original size:87 final size:89
Alignment explanation
Indices: 37070600--37070762 Score: 276
Period size: 87 Copynumber: 1.9 Consensus size: 89
37070590 AACCCCTAAC
*
37070600 CCCTAACTACTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAACTAATCTAAACC
1 CCCTAACCACTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAACTAATCTAAACC
37070665 TTAAACCCTAAACCTAACCCGAAT
66 TTAAACCCTAAACCTAACCCGAAT
* * *
37070689 CCCTAACCCCTAACCCCTAAACCTTATTT-A-ATATAAATTAAAACACACTAATTAATCTAAACC
1 CCCTAACCACTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAACTAATCTAAACC
37070752 TTAAACCCTAA
66 TTAAACCCTAA
37070763 TCTAACATCA
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
87 42 0.60
88 1 0.01
89 27 0.39
ACGTcount: A:0.44, C:0.29, G:0.01, T:0.26
Consensus pattern (89 bp):
CCCTAACCACTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAACTAATCTAAACC
TTAAACCCTAAACCTAACCCGAAT
Found at i:37070787 original size:87 final size:89
Alignment explanation
Indices: 37070609--37070788 Score: 258
Period size: 87 Copynumber: 2.0 Consensus size: 89
37070599 CCCCTAACTA
37070609 CTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAACTAATCTAAACCTTAAACCCT
1 CTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAACTAATCTAAACCTTAAACCCT
* * *
37070674 AAACCTAACCCGAATCCCTAACCC
66 AAACCTAACCCAAATCCATAAACC
* *
37070698 CTAACCCCTAAACCTTATTT-A-ATATAAATTAAAACACACTAATTAATCTAAACCTTAAACCCT
1 CTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAACTAATCTAAACCTTAAACCCT
* * *
37070761 -AATCTAACATCAAATTCATAAACC
66 AAACCTAAC-CCAAATCCATAAACC
37070785 CTAA
1 CTAA
37070789 ATCACTAACT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
86 7 0.09
87 54 0.66
88 1 0.01
89 20 0.24
ACGTcount: A:0.45, C:0.28, G:0.01, T:0.27
Consensus pattern (89 bp):
CTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAACTAATCTAAACCTTAAACCCT
AAACCTAACCCAAATCCATAAACC
Found at i:37070819 original size:7 final size:7
Alignment explanation
Indices: 37070807--37070838 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
37070797 CTCTTAATCT
37070807 CTAACCC
1 CTAACCC
37070814 CTAACCC
1 CTAACCC
*
37070821 CTAGCCC
1 CTAACCC
37070828 CTAACCC
1 CTAACCC
37070835 CTAA
1 CTAA
37070839 ATCACAACCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.28, C:0.53, G:0.03, T:0.16
Consensus pattern (7 bp):
CTAACCC
Found at i:37070877 original size:14 final size:15
Alignment explanation
Indices: 37070858--37070890 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
37070848 CTTAAACCAG
37070858 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
37070872 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
37070887 AATC
1 AATC
37070891 TATAAACCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:37070962 original size:14 final size:14
Alignment explanation
Indices: 37070939--37070975 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
37070929 ATCCTAAATT
* *
37070939 AACCACATACCTTA
1 AACCATATACCCTA
37070953 AACCATATACCCTA
1 AACCATATACCCTA
37070967 AACCATATA
1 AACCATATA
37070976 TATTAAGCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.22
Consensus pattern (14 bp):
AACCATATACCCTA
Found at i:37071282 original size:41 final size:41
Alignment explanation
Indices: 37071236--37071508 Score: 384
Period size: 41 Copynumber: 6.7 Consensus size: 41
37071226 ATATTTTTGT
* *
37071236 GGCGCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTAAC
1 GGCGCTTTCTCAAAAACGCCGCTAAAGATCTGAGCATTAGC
* *
37071277 GGCGCTTTCTCAAAAACGCCACTAAATATCTGAGCATTAGC
1 GGCGCTTTCTCAAAAACGCCGCTAAAGATCTGAGCATTAGC
* * *
37071318 GGCGCTTTTTCAAAAACGCCGCTAAAAATTTGAGCATTAGC
1 GGCGCTTTCTCAAAAACGCCGCTAAAGATCTGAGCATTAGC
* *
37071359 GGCGCTTTCTCAAAAATGCCGCTAAAGATCTGAGTATTAGC
1 GGCGCTTTCTCAAAAACGCCGCTAAAGATCTGAGCATTAGC
* * ** *
37071400 GACGCTTTCTCAAAAACTCCTTTAAAGATCTGAGCATCAGC
1 GGCGCTTTCTCAAAAACGCCGCTAAAGATCTGAGCATTAGC
*
37071441 GGCGCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTAGC
1 GGCGCTTTCTCAAAAACGCCGCTAAAGATCTGAGCATTAGC
* * *
37071482 GGCCCTTTCTCAAAAATGACGCTAAAG
1 GGCGCTTTCTCAAAAACGCCGCTAAAG
37071509 CCCTGAAAGG
Statistics
Matches: 202, Mismatches: 30, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 202 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (41 bp):
GGCGCTTTCTCAAAAACGCCGCTAAAGATCTGAGCATTAGC
Found at i:37071618 original size:40 final size:38
Alignment explanation
Indices: 37071547--37071641 Score: 136
Period size: 40 Copynumber: 2.4 Consensus size: 38
37071537 GGCTTAGGTT
* *
37071547 TTTAGCGGCGCTTTTTTAAAGCGCTGTTAATGCTCGATC
1 TTTAGCGGCG-TTTTTTAAAGCGCCGCTAATGCTCGATC
37071586 TTTAGCGGCGTTTTATGTAAAGCGCCGCTAATGCTCGATC
1 TTTAGCGGCGTTTT-T-TAAAGCGCCGCTAATGCTCGATC
*
37071626 TTTAGCGGCATTTTTT
1 TTTAGCGGCGTTTTTT
37071642 GTCCAAACGC
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
38 5 0.10
39 12 0.24
40 34 0.67
ACGTcount: A:0.18, C:0.20, G:0.23, T:0.39
Consensus pattern (38 bp):
TTTAGCGGCGTTTTTTAAAGCGCCGCTAATGCTCGATC
Found at i:37083427 original size:23 final size:23
Alignment explanation
Indices: 37083401--37083519 Score: 154
Period size: 23 Copynumber: 5.3 Consensus size: 23
37083391 ATAAGTGCCA
*
37083401 CACTGATACGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGTAGCTAC
*
37083424 CACTGAGATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGTAGCTAC
* *
37083447 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGTAGCTAC
*
37083470 TACTGATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGTAGCTAC
* *
37083493 CACTGAAATGT-G-C-AAGCTAC
1 CACTGATATGTAGCCGTAGCTAC
37083513 CACTGAT
1 CACTGAT
37083520 CAATAACACT
Statistics
Matches: 85, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
20 12 0.14
21 1 0.01
22 1 0.01
23 71 0.84
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (23 bp):
CACTGATATGTAGCCGTAGCTAC
Found at i:37083468 original size:46 final size:46
Alignment explanation
Indices: 37083401--37083518 Score: 170
Period size: 46 Copynumber: 2.6 Consensus size: 46
37083391 ATAAGTGCCA
* * *
37083401 CACTGATACGTAGCCGTAGCTACCACTGAGATGTAGCCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGAGATGTAGCCGTAGCTAC
* *
37083447 CACTGAAATGTAGCCGAAGCTACTACTGATATGTAGCCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGAGATGTAGCCGTAGCTAC
37083493 CACTGAAATGT-G-C-AAGCTACCACTGA
1 CACTGAAATGTAGCCGAAGCTACCACTGA
37083519 TCAATAACAC
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
43 12 0.18
44 1 0.02
45 1 0.02
46 52 0.79
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (46 bp):
CACTGAAATGTAGCCGAAGCTACCACTGAGATGTAGCCGTAGCTAC
Found at i:37083764 original size:17 final size:18
Alignment explanation
Indices: 37083742--37083782 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
37083732 CAATTTTCCT
37083742 TTCACAT-TC-AATATTAA
1 TTCACATATCAAATA-TAA
37083759 TTCACATATCAAATATAA
1 TTCACATATCAAATATAA
37083777 TTCACA
1 TTCACA
37083783 ATTTATAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 7 0.32
18 11 0.50
19 4 0.18
ACGTcount: A:0.44, C:0.20, G:0.00, T:0.37
Consensus pattern (18 bp):
TTCACATATCAAATATAA
Found at i:37084001 original size:30 final size:30
Alignment explanation
Indices: 37083967--37084025 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
37083957 TCCTTGACTC
37083967 AAAC-TTTGACAAAATTATAATTTTTCCCCT
1 AAACTTTTG-CAAAATTATAATTTTTCCCCT
* * *
37083997 AAACTTTTGCATATTTATACTTTTTCCCC
1 AAACTTTTGCAAAATTATAATTTTTCCCC
37084026 AAAGCTCGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.31, C:0.22, G:0.03, T:0.44
Consensus pattern (30 bp):
AAACTTTTGCAAAATTATAATTTTTCCCCT
Found at i:37086908 original size:22 final size:22
Alignment explanation
Indices: 37086880--37086926 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
37086870 ACAAAGTTTT
37086880 TTTTTA-TTTGATTTTTTTCTAA
1 TTTTTATTTTGATTTTTTT-TAA
*
37086902 TTTTTATTTTTATTTTTTTTAA
1 TTTTTATTTTGATTTTTTTTAA
37086924 TTT
1 TTT
37086927 GTTGGTCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (22 bp):
TTTTTATTTTGATTTTTTTTAA
Found at i:37091704 original size:12 final size:13
Alignment explanation
Indices: 37091679--37091707 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
37091669 AAGTACAAAA
37091679 GAAAACTAAAACT
1 GAAAACTAAAACT
37091692 GAAAACT-AAACT
1 GAAAACTAAAACT
37091704 GAAA
1 GAAA
37091708 GGAAAATTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.62, C:0.14, G:0.10, T:0.14
Consensus pattern (13 bp):
GAAAACTAAAACT
Found at i:37100487 original size:46 final size:46
Alignment explanation
Indices: 37100392--37100487 Score: 113
Period size: 46 Copynumber: 2.1 Consensus size: 46
37100382 ACTTCCAAAT
* * *
37100392 CAGATATATATGGTCAAGCCACTATGTTGCAGCCAAGCTGCCAGTA
1 CAGATATATATGGTCAAGCCACCATATTGCAGACAAGCTGCCAGTA
* * * *
37100438 CAGATGTATATGGTCTAGCCACCATAATTGTAGACAAGTTGCCAG-A
1 CAGATATATATGGTCAAGCCACCAT-ATTGCAGACAAGCTGCCAGTA
37100484 CAGA
1 CAGA
37100488 ATTGTGGATA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
46 27 0.64
47 15 0.36
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (46 bp):
CAGATATATATGGTCAAGCCACCATATTGCAGACAAGCTGCCAGTA
Found at i:37105053 original size:14 final size:14
Alignment explanation
Indices: 37105034--37105061 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37105024 ATGTTATATC
37105034 AATAAATTTAATAA
1 AATAAATTTAATAA
37105048 AATAAATTTAATAA
1 AATAAATTTAATAA
37105062 TATTAATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AATAAATTTAATAA
Found at i:37105109 original size:22 final size:23
Alignment explanation
Indices: 37105083--37105125 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
37105073 GAACATAAAT
37105083 ATTAAAATC-TAAAAATAAAAGA
1 ATTAAAATCTTAAAAATAAAAGA
**
37105105 ATTAAGTTCTTAAAAATAAAA
1 ATTAAAATCTTAAAAATAAAA
37105126 ATACAAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.63, C:0.05, G:0.05, T:0.28
Consensus pattern (23 bp):
ATTAAAATCTTAAAAATAAAAGA
Found at i:37106726 original size:15 final size:15
Alignment explanation
Indices: 37106706--37106739 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
37106696 AACAACATGA
37106706 TAGTTGGGTGGCTAC
1 TAGTTGGGTGGCTAC
37106721 TAGTTGGGTGGCTAC
1 TAGTTGGGTGGCTAC
37106736 TAGT
1 TAGT
37106740 GTAGTTTACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.15, C:0.12, G:0.38, T:0.35
Consensus pattern (15 bp):
TAGTTGGGTGGCTAC
Found at i:37112662 original size:9 final size:10
Alignment explanation
Indices: 37112645--37112709 Score: 53
Period size: 11 Copynumber: 6.3 Consensus size: 10
37112635 ATCTAGAAAA
37112645 TTTT-TAATT
1 TTTTATAATT
37112654 TTTTA-AATT
1 TTTTATAATT
*
37112663 TCTTTATATACT
1 T-TTTATA-ATT
37112675 TTTTATAATTT
1 TTTTATAA-TT
* *
37112686 TTTTCTGAAAT
1 TTTTAT-AATT
37112697 TTTTATAATT
1 TTTTATAATT
37112707 TTT
1 TTT
37112710 GAAAAAAATA
Statistics
Matches: 44, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
9 9 0.20
10 11 0.25
11 19 0.43
12 5 0.11
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.68
Consensus pattern (10 bp):
TTTTATAATT
Found at i:37112684 original size:22 final size:22
Alignment explanation
Indices: 37112653--37112707 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
37112643 AATTTTTAAT
*
37112653 TTTTTA-AATTTCTTTAT-ATAC
1 TTTTTATAATTTCTTTATGA-AA
* *
37112674 TTTTTATAATTTTTTTCTGAAA
1 TTTTTATAATTTCTTTATGAAA
37112696 TTTTTATAATTT
1 TTTTTATAATTT
37112708 TTGAAAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 6 0.21
22 22 0.76
23 1 0.03
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.65
Consensus pattern (22 bp):
TTTTTATAATTTCTTTATGAAA
Found at i:37112939 original size:12 final size:11
Alignment explanation
Indices: 37112917--37112941 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
37112907 CGAGTAACTC
37112917 TTTAATTTTTT
1 TTTAATTTTTT
37112928 TTTAATTTTTT
1 TTTAATTTTTT
37112939 TTT
1 TTT
37112942 CGAATCGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTAATTTTTT
Found at i:37114713 original size:21 final size:21
Alignment explanation
Indices: 37114687--37114727 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
37114677 TAATGAGACC
*
37114687 GCTGATGTGGCAAGTTAACTA
1 GCTGATGTGACAAGTTAACTA
37114708 GCTGATGTGACAAGTTAACT
1 GCTGATGTGACAAGTTAACT
37114728 TACCATGTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (21 bp):
GCTGATGTGACAAGTTAACTA
Found at i:37114978 original size:40 final size:40
Alignment explanation
Indices: 37114874--37114978 Score: 115
Period size: 44 Copynumber: 2.5 Consensus size: 40
37114864 GCAAAAAAAA
* * **
37114874 TAATAGGGATTT-CGGTTAG-AAATCGATTCAGGAATTGAT
1 TAATAGGG-TTTAGGGTTAGAAAATCAATTCAACAATTGAT
37114913 TAATAAGGTTGGTTTAGGGTTAGAAAATCAATTCAACAATTGAT
1 TAAT-A-G--GGTTTAGGGTTAGAAAATCAATTCAACAATTGAT
37114957 TAATAGGGTTTAGGGTTAGAAA
1 TAATAGGGTTTAGGGTTAGAAA
37114979 TCGATTGATA
Statistics
Matches: 56, Mismatches: 4, Indels: 11
0.79 0.06 0.15
Matches are distributed among these distances:
39 4 0.07
40 17 0.30
41 1 0.02
42 4 0.07
43 9 0.16
44 21 0.38
ACGTcount: A:0.36, C:0.06, G:0.25, T:0.33
Consensus pattern (40 bp):
TAATAGGGTTTAGGGTTAGAAAATCAATTCAACAATTGAT
Found at i:37115504 original size:102 final size:103
Alignment explanation
Indices: 37115309--37115511 Score: 327
Period size: 102 Copynumber: 2.0 Consensus size: 103
37115299 TTAAGGTCTA
* *
37115309 GTTATTAAAGTGAATGGCAGATACTGTGTATGGTATGCCATGTACATGATGTTGTGTATGTCATA
1 GTTATTAAAGTGAATGGCAGATACTGTGCATGGTATGCCATGTACATGATGCTGTGTATGTCATA
* *
37115374 TTTATTGTTTGTTGTATATGCTGCTGTGTATGTCATTT
66 TTTATTGTTTGTTGCATATACTGCTGTGTATGTCATTT
* * *
37115412 GTTATT-AAGTGAATGGTAGATACTGTGCATGGTATGCCATGTGCATGATGCTGTGTATGTCATG
1 GTTATTAAAGTGAATGGCAGATACTGTGCATGGTATGCCATGTACATGATGCTGTGTATGTCATA
*
37115476 TTTATTGTTTGTTGCATATACTGTTGTGTATGTCAT
66 TTTATTGTTTGTTGCATATACTGCTGTGTATGTCAT
37115512 GTTTATTGTT
Statistics
Matches: 92, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
102 86 0.93
103 6 0.07
ACGTcount: A:0.22, C:0.09, G:0.25, T:0.44
Consensus pattern (103 bp):
GTTATTAAAGTGAATGGCAGATACTGTGCATGGTATGCCATGTACATGATGCTGTGTATGTCATA
TTTATTGTTTGTTGCATATACTGCTGTGTATGTCATTT
Found at i:37116402 original size:20 final size:20
Alignment explanation
Indices: 37116365--37116402 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
37116355 ATGAAATTAG
*
37116365 TATAAAAATATAAGATTAAA
1 TATAAAAATATAAAATTAAA
37116385 TATAAAGAATA-AAAATTA
1 TATAAA-AATATAAAATTA
37116403 GTCTCGATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (20 bp):
TATAAAAATATAAAATTAAA
Found at i:37119386 original size:47 final size:47
Alignment explanation
Indices: 37119308--37119853 Score: 816
Period size: 47 Copynumber: 11.6 Consensus size: 47
37119298 CCCTTCGGGA
* * * * * *
37119308 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37119354 CTCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CT-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37119402 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37119449 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37119496 CTTATCACATATAT--A---TAACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37119538 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37119587 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37119636 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37119683 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37119732 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37119781 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37119828 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
37119854 CACAATTATC
Statistics
Matches: 465, Mismatches: 24, Indels: 21
0.91 0.05 0.04
Matches are distributed among these distances:
42 34 0.07
44 6 0.01
45 1 0.00
46 3 0.01
47 244 0.52
48 2 0.00
49 175 0.38
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37119505 original size:22 final size:22
Alignment explanation
Indices: 37119477--37119547 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
37119467 TTTCACATTC
37119477 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
** * *
37119499 ATCACAT---ATATATA-ACATT
1 ATCACATCGGCCAT-TAGGCCTT
37119518 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
37119541 ATCACAT
1 ATCACAT
37119548 ATATATACAC
Statistics
Matches: 35, Mismatches: 8, Indels: 12
0.64 0.15 0.22
Matches are distributed among these distances:
19 5 0.14
20 9 0.26
22 16 0.46
23 5 0.14
ACGTcount: A:0.31, C:0.28, G:0.11, T:0.30
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:37119568 original size:49 final size:49
Alignment explanation
Indices: 37119513--37119853 Score: 604
Period size: 49 Copynumber: 7.1 Consensus size: 49
37119503 CATATATATA
37119513 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
37119562 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
* *
37119611 ACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
37119658 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
37119707 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
* *
37119756 ACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
37119803 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA--TTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
37119850 ACAT
1 ACAT
37119854 CACAATTATC
Statistics
Matches: 280, Mismatches: 8, Indels: 10
0.94 0.03 0.03
Matches are distributed among these distances:
47 97 0.35
49 183 0.65
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
Found at i:37119716 original size:145 final size:145
Alignment explanation
Indices: 37119308--37119853 Score: 895
Period size: 145 Copynumber: 3.9 Consensus size: 145
37119298 CCCTTCGGGA
* * * *
37119308 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGG-CTCTGTCACATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCT-TATCACATATATA
*
37119370 CACTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC--ATATATACACTTTCACATTCATC
65 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
*
37119433 ACATCGGCTATTAGGC
130 ACATCGGCCATTAGGC
* * *
37119449 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
37119510 A---TAACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
37119572 CATCGGCCATTAGGC
131 CATCGGCCATTAGGC
37119587 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
37119652 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
37119717 CATCGGCCATTAGGC
131 CATCGGCCATTAGGC
37119732 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
37119797 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA--TTCACAT
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
37119854 CACAATTATC
Statistics
Matches: 379, Mismatches: 14, Indels: 22
0.91 0.03 0.05
Matches are distributed among these distances:
136 33 0.09
138 45 0.12
139 1 0.00
140 52 0.14
141 48 0.13
142 3 0.01
143 7 0.02
145 190 0.50
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (145 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
CATCGGCCATTAGGC
Found at i:37123621 original size:15 final size:15
Alignment explanation
Indices: 37123603--37123662 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 15
37123593 TGTCTGATTT
37123603 TGATGTGTCTAATAG
1 TGATGTGTCTAATAG
* ** *
37123618 TGATGTCTCTGTTAA
1 TGATGTGTCTAATAG
*
37123633 TGATGTGTCTGATAG
1 TGATGTGTCTAATAG
*
37123648 TGATGTGTTTAATAG
1 TGATGTGTCTAATAG
37123663 GATAAGGGTT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.23, C:0.07, G:0.27, T:0.43
Consensus pattern (15 bp):
TGATGTGTCTAATAG
Found at i:37126036 original size:21 final size:21
Alignment explanation
Indices: 37125959--37126053 Score: 73
Period size: 21 Copynumber: 4.5 Consensus size: 21
37125949 CAAGTGGTTA
* * * *
37125959 CCCAACTCAATAACAGTCTAT
1 CCCAACTCAGTAAGAGACTAC
* * *
37125980 CCCAAATCAGTAATAGTCTAC
1 CCCAACTCAGTAAGAGACTAC
* * *
37126001 CCCAAATTAGAAAGAGACTAC
1 CCCAACTCAGTAAGAGACTAC
* * *
37126022 CCTAACTCAGTAAGAGGCTGC
1 CCCAACTCAGTAAGAGACTAC
37126043 CCCAACTCAGT
1 CCCAACTCAGT
37126054 TACAAACTGC
Statistics
Matches: 59, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 59 1.00
ACGTcount: A:0.37, C:0.31, G:0.13, T:0.20
Consensus pattern (21 bp):
CCCAACTCAGTAAGAGACTAC
Found at i:37127141 original size:23 final size:23
Alignment explanation
Indices: 37127107--37127158 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
37127097 CATCTCCATT
37127107 TTTTTC-TCTTCTTCTCCTCCTC
1 TTTTTCTTCTTCTTCTCCTCCTC
* * * *
37127129 TTTTTCTTTTTCTTTTTCTCTTC
1 TTTTTCTTCTTCTTCTCCTCCTC
37127152 TTTTTCT
1 TTTTTCT
37127159 ACTGCCTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
22 6 0.24
23 19 0.76
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (23 bp):
TTTTTCTTCTTCTTCTCCTCCTC
Found at i:37136730 original size:50 final size:50
Alignment explanation
Indices: 37136619--37136858 Score: 209
Period size: 50 Copynumber: 4.7 Consensus size: 50
37136609 ATTTGGGTAA
* * **
37136619 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCA-TGG-GT-ACCGAG---ATG
*
37136675 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTGGGTACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGTACCGAGATG
** * * *
37136725 AGAGGTCCCCCGTAAGATCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGTACCGAGATG
** * *
37136775 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCAGTA-C-A-A-G
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCA-TGG--GTACCGAGATG
* ** *
37136824 AAACATCCCATGTAAGACCATGTCTAGGACATGGC
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGC
37136859 TTTGGCATGT
Statistics
Matches: 156, Mismatches: 25, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
49 30 0.19
50 77 0.49
51 4 0.03
52 1 0.01
53 6 0.04
54 1 0.01
55 3 0.02
56 34 0.22
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGTACCGAGATG
Found at i:37141789 original size:18 final size:18
Alignment explanation
Indices: 37141766--37141800 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37141756 ATTAATTTTG
37141766 ATCAAATAAAATAAAATA
1 ATCAAATAAAATAAAATA
* *
37141784 ATCAAATTAATTAAAAT
1 ATCAAATAAAATAAAAT
37141801 TAATATGATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.29
Consensus pattern (18 bp):
ATCAAATAAAATAAAATA
Found at i:37145942 original size:51 final size:51
Alignment explanation
Indices: 37145866--37146099 Score: 224
Period size: 51 Copynumber: 4.6 Consensus size: 51
37145856 TGTCGATGAA
** *
37145866 CACATGTGTAGTACTGTGTGAAGGCTACTACATGTATCGATAAA-TAATGGT
1 CACATGTGTAGTACTAAGTGAAGGCTACTACGTGTATCGATAAACT-ATGGT
* *
37145917 CACATGTGTAGTACTAAGTGAAGGCTACTATGTGTATCGA-AAAGCTTTGAG-
1 CACATGTGTAGTACTAAGTGAAGGCTACTACGTGTATCGATAAA-CTATG-GT
* ** * *
37145968 CACGTGTGTAGTACTGTGTGAATGCTACTACGTGTATCGGTAAACTATGGT
1 CACATGTGTAGTACTAAGTGAAGGCTACTACGTGTATCGATAAACTATGGT
* * * * * * *
37146019 TACATGTGTAGTACTAAGTGAAGGCTACAATGGGTACCGA-AAAGCTTTGGC
1 CACATGTGTAGTACTAAGTGAAGGCTACTACGTGTATCGATAAA-CTATGGT
* * *
37146070 CACGTATGTAGTACTATGTGAAGGCTACTA
1 CACATGTGTAGTACTAAGTGAAGGCTACTA
37146100 AGTGAGCCGT
Statistics
Matches: 148, Mismatches: 29, Indels: 12
0.78 0.15 0.06
Matches are distributed among these distances:
50 7 0.05
51 136 0.92
52 5 0.03
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (51 bp):
CACATGTGTAGTACTAAGTGAAGGCTACTACGTGTATCGATAAACTATGGT
Found at i:37146046 original size:102 final size:102
Alignment explanation
Indices: 37145870--37146099 Score: 347
Period size: 102 Copynumber: 2.3 Consensus size: 102
37145860 GATGAACACA
37145870 TGTGTAGTACTGTGTGAAGGCTACTACATGTATCGATAAATAATGGTCACATGTGTAGTACTAAG
1 TGTGTAGTACTGTGTGAAGGCTACTACATGTATCGATAAATAATGGTCACATGTGTAGTACTAAG
* * *
37145935 TGAAGGCTACTATGTGTATCGAAAAGCTTTGAG-CACG
66 TGAAGGCTACAATGGGTACCGAAAAGCTTTG-GCCACG
* * * *
37145972 TGTGTAGTACTGTGTGAATGCTACTACGTGTATCGGTAAACT-ATGGTTACATGTGTAGTACTAA
1 TGTGTAGTACTGTGTGAAGGCTACTACATGTATCGATAAA-TAATGGTCACATGTGTAGTACTAA
37146036 GTGAAGGCTACAATGGGTACCGAAAAGCTTTGGCCACG
65 GTGAAGGCTACAATGGGTACCGAAAAGCTTTGGCCACG
* *
37146074 TATGTAGTACTATGTGAAGGCTACTA
1 TGTGTAGTACTGTGTGAAGGCTACTA
37146100 AGTGAGCCGT
Statistics
Matches: 116, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
101 1 0.01
102 114 0.98
103 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.30
Consensus pattern (102 bp):
TGTGTAGTACTGTGTGAAGGCTACTACATGTATCGATAAATAATGGTCACATGTGTAGTACTAAG
TGAAGGCTACAATGGGTACCGAAAAGCTTTGGCCACG
Found at i:37146115 original size:102 final size:102
Alignment explanation
Indices: 37145872--37146135 Score: 315
Period size: 102 Copynumber: 2.6 Consensus size: 102
37145862 TGAACACATG
* *
37145872 TGTAGTACTGTGTGAAGGCTACTACA-TGTA-TCGATAAA-TAATGGTCACATGTGTAGTACTAA
1 TGTAGTACTATGTGAAGGCTACTA-AGTGTAGCCG-TAAACT-ATGGTCACATGTGTAGTACTAA
* * * *
37145934 GTGAAGGCTACTATGTGTATCGAAAAGCTTTGAGCACGTG
63 GTGAAGGCTACAATGGGTACCGAAAAGCTTTGAGCACGTA
* * * * * *
37145974 TGTAGTACTGTGTGAATGCTACTACGTGTATCGGTAAACTATGGTTACATGTGTAGTACTAAGTG
1 TGTAGTACTATGTGAAGGCTACTAAGTGTAGCCGTAAACTATGGTCACATGTGTAGTACTAAGTG
37146039 AAGGCTACAATGGGTACCGAAAAGCTTTG-GCCACGTA
66 AAGGCTACAATGGGTACCGAAAAGCTTTGAG-CACGTA
* *
37146076 TGTAGTACTATGTGAAGGCTACTAAGTG-AGCCGTAAAACT-TGATCACGTGTGTAGTACTA
1 TGTAGTACTATGTGAAGGCTACTAAGTGTAGCCGT-AAACTATGGTCACATGTGTAGTACTA
37146136 TGTTTACACA
Statistics
Matches: 140, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
101 22 0.16
102 116 0.83
103 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (102 bp):
TGTAGTACTATGTGAAGGCTACTAAGTGTAGCCGTAAACTATGGTCACATGTGTAGTACTAAGTG
AAGGCTACAATGGGTACCGAAAAGCTTTGAGCACGTA
Found at i:37146149 original size:63 final size:62
Alignment explanation
Indices: 37146082--37146200 Score: 193
Period size: 63 Copynumber: 1.9 Consensus size: 62
37146072 CGTATGTAGT
*
37146082 ACTATGTGAAGGCTACTAAGTGAGCCGTAAAACTTGATCACGTGTGTAGTACTATGTTTACAC
1 ACTATGTGAAGGCTACTAAGTGAACCGTAAAAC-TGATCACGTGTGTAGTACTATGTTTACAC
* * *
37146145 ACTATGTGAAGGCTACTACGTGAACTGTAAAACTGATTACGTGTGTAGTACTATGT
1 ACTATGTGAAGGCTACTAAGTGAACCGTAAAACTGATCACGTGTGTAGTACTATGT
37146201 GAAGGCTACT
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
62 22 0.42
63 30 0.58
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (62 bp):
ACTATGTGAAGGCTACTAAGTGAACCGTAAAACTGATCACGTGTGTAGTACTATGTTTACAC
Found at i:37150148 original size:47 final size:47
Alignment explanation
Indices: 37150079--37150580 Score: 779
Period size: 47 Copynumber: 10.6 Consensus size: 47
37150069 GATAATTGTG
* * *
37150079 ATGTGAATGTATATACATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
37150126 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37150173 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTAATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37150222 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
37150269 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37150316 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37150365 ATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37150414 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37150461 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
37150508 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37150555 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
37150581 TCCCGAAGGG
Statistics
Matches: 420, Mismatches: 29, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
47 284 0.68
49 136 0.32
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:37150186 original size:96 final size:95
Alignment explanation
Indices: 37150079--37150580 Score: 780
Period size: 96 Copynumber: 5.3 Consensus size: 95
37150069 GATAATTGTG
37150079 ATGTG-AA-TGTATATACATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATA-ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
37150142 ATGTGATAAGGCCGAATGGCCAATGTGATGA
65 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37150173 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATA-ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
37150238 ATGTGATAAGGCCTAATGGCCGATGCGATGA
65 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
37150269 ATGTGAAAGTGTATAT-ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 ATGTGAAAGTGTATATAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
37150333 TATGTGATAAGGCCTAATGGCCGATGTGATGA
64 TATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37150365 ATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATA-ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
37150430 ATGTGATAAGGCCTAATAGCCGATGTGATGA
65 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37150461 ATGTGAAAGTGTATAT-ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 ATGTGAAAGTGTATATAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * *
37150525 TGTGACAGGGCCGAGTGGCCAACGTGATGG
66 TGTGATAAGGCCTAATGGCCGATGTGATGA
37150555 ATGTGAAAGTGTATA-AATGTGATAAG
1 ATGTGAAAGTGTATATAATGTGATAAG
37150581 TCCCGAAGGG
Statistics
Matches: 377, Mismatches: 24, Indels: 14
0.91 0.06 0.03
Matches are distributed among these distances:
94 137 0.36
95 2 0.01
96 198 0.53
98 40 0.11
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (95 bp):
ATGTGAAAGTGTATATAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:37150228 original size:143 final size:143
Alignment explanation
Indices: 37150079--37150580 Score: 801
Period size: 143 Copynumber: 3.5 Consensus size: 143
37150069 GATAATTGTG
* *
37150079 ATGTGAATGTATATACATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
37150144 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
*
37150209 GCCGATGTAATGA
131 GCCGATGTGATGA
* *
37150222 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
37150287 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
37150352 GCCGATGTGATGA
131 GCCGATGTGATGA
*
37150365 ATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * *
37150430 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATGAGGCCTAA
64 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
37150493 TGGCCGATGTGATGA
129 TGGCCGATGTGATGA
* * * * * * * * *
37150508 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
37150573 GTGATAAG
66 GTGATAAG
37150581 TCCCGAAGGG
Statistics
Matches: 335, Mismatches: 22, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
141 55 0.16
143 189 0.56
145 91 0.27
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
GCCGATGTGATGA
Found at i:37153164 original size:40 final size:40
Alignment explanation
Indices: 37152805--37153152 Score: 513
Period size: 40 Copynumber: 8.7 Consensus size: 40
37152795 AGGTCTCGAC
37152805 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
37152844 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
37152884 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
37152924 GATGTA-CCTGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCC-GGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
37152964 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
37153004 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
37153044 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * ** * *
37153084 AATATATCCATGCTAA-ACCTCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTAGT
* * * *
37153124 GTTATATCCGGGCTAGGTCCCAAAGAGCA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCA
37153153 ATCATGCTGG
Statistics
Matches: 279, Mismatches: 25, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
39 7 0.03
40 268 0.96
41 4 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:37156871 original size:47 final size:47
Alignment explanation
Indices: 37156819--37157320 Score: 770
Period size: 47 Copynumber: 10.6 Consensus size: 47
37156809 GATAATTGTG
* *
37156819 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
37156866 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37156913 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTAATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37156962 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
37157009 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37157056 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37157105 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
37157154 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCAGTTGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37157201 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
37157248 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37157295 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
37157321 TCCCGAAGGG
Statistics
Matches: 419, Mismatches: 32, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
47 281 0.67
49 138 0.33
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:37156926 original size:96 final size:96
Alignment explanation
Indices: 37156819--37157320 Score: 770
Period size: 96 Copynumber: 5.3 Consensus size: 96
37156809 GATAATTGTG
37156819 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
37156882 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCTAATGGCCAATGTGATGA
*
37156913 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
37156978 ATGTGATAAGGCCTAATGGCCGATGCGATGA
66 ATGTGATAAGGCCTAATGGCCAATGTGATGA
* *
37157009 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
*
37157072 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCAATGTGATGA
37157105 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
37157170 ATGTGATAAGGCCTAATAG-CAGTTGTGATGA
66 ATGTGATAAGGCCTAATGGCCA-ATGTGATGA
*
37157201 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * *
37157264 ATGTGACAGGGCCGAGTGGCCAACGTGATGG
66 ATGTGATAAGGCCTAATGGCCAATGTGATGA
37157295 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
37157321 TCCCGAAGGG
Statistics
Matches: 375, Mismatches: 23, Indels: 20
0.90 0.06 0.05
Matches are distributed among these distances:
94 140 0.37
95 6 0.02
96 184 0.49
98 45 0.12
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCAATGTGATGA
Found at i:37156966 original size:143 final size:143
Alignment explanation
Indices: 37156819--37157320 Score: 803
Period size: 143 Copynumber: 3.5 Consensus size: 143
37156809 GATAATTGTG
*
37156819 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
37156884 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
*
37156949 GCCGATGTAATGA
131 GCCGATGTGATGA
* *
37156962 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
37157027 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
37157092 GCCGATGTGATGA
131 GCCGATGTGATGA
37157105 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * *
37157170 ATGTGATAAGGCCTAATAG-CAGTTGTGATGAATGTGAAAGTG--TATATATGTGATGAGGCCTA
64 ATGTGATAAGGCCGAATGGCCA-ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
37157232 ATGGCCGATGTGATGA
128 ATGGCCGATGTGATGA
* * * * * * * * *
37157248 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
37157313 GTGATAAG
66 GTGATAAG
37157321 TCCCGAAGGG
Statistics
Matches: 337, Mismatches: 19, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
141 56 0.17
143 190 0.56
144 2 0.01
145 89 0.26
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (143 bp):
ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
GCCGATGTGATGA
Found at i:37164696 original size:15 final size:17
Alignment explanation
Indices: 37164665--37164697 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
37164655 AAGTTGTATG
37164665 TAATTATTATATTGTTA
1 TAATTATTATATTGTTA
37164682 TAATTATT-T-TTGTTA
1 TAATTATTATATTGTTA
37164697 T
1 T
37164698 GTTTCATAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 1 0.06
17 8 0.50
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (17 bp):
TAATTATTATATTGTTA
Found at i:37164875 original size:51 final size:51
Alignment explanation
Indices: 37164795--37165133 Score: 320
Period size: 51 Copynumber: 6.7 Consensus size: 51
37164785 TGTCGATGAA
* ** *
37164795 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATTGATAAA-TAATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAACT-TTGGT
* * *
37164846 CACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGA-AAAGCTTTGAG-
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAA-CTTTG-GT
* * * * *
37164897 CACGTGTGTAGTACTGTGTGAATGCTACTACGTGTATCGGTAAACTATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAACTTTGGT
* * * * * *
37164948 TACATGTGTAGTACTAAGTGAAGGCTACAATGGGTACCGA-AAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAA-CTTTGGT
* * *
37164999 CACGTATGTAGTACTATGTGAAGGCTACTACGTG-AGCTG-TAAAAC-TTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA-CCGAT-AAACTTTGGT
* * *
37165049 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACTG-TAAAAC--TGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAT-AAACTTTGGT
*
37165098 TACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA
37165134 TCGAATGATA
Statistics
Matches: 240, Mismatches: 38, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
49 38 0.16
50 54 0.22
51 140 0.58
52 8 0.03
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (51 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAACTTTGGT
Found at i:37164879 original size:26 final size:26
Alignment explanation
Indices: 37164799--37164881 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
37164789 GATGAACACG
**
37164799 TGTGTAGTACTGTGTGAAGGCTACTA
1 TGTGTAGTACTAAGTGAAGGCTACTA
* * *
37164825 CGTGTATTGA-TAAAT-AATGG-TCAC-A
1 TGTGTAGT-ACTAAGTGAA-GGCT-ACTA
37164850 TGTGTAGTACTAAGTGAAGGCTACTA
1 TGTGTAGTACTAAGTGAAGGCTACTA
37164876 TGTGTA
1 TGTGTA
37164882 CCGAAAAGCT
Statistics
Matches: 42, Mismatches: 8, Indels: 14
0.66 0.12 0.22
Matches are distributed among these distances:
24 1 0.02
25 18 0.43
26 22 0.52
27 1 0.02
ACGTcount: A:0.29, C:0.11, G:0.27, T:0.34
Consensus pattern (26 bp):
TGTGTAGTACTAAGTGAAGGCTACTA
Found at i:37164971 original size:102 final size:102
Alignment explanation
Indices: 37164795--37165136 Score: 428
Period size: 102 Copynumber: 3.4 Consensus size: 102
37164785 TGTCGATGAA
* * *
37164795 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATTGATAAA-TAATGGTCACATGTGTAGTA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGTAAACT-ATGGTCACATGTGTAGTA
37164859 CTAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGAG
65 CTAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGAG
* * *
37164897 CACGTGTGTAGTACTGTGTGAATGCTACTACGTGTATCGGTAAACTATGGTTACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGTAAACTATGGTCACATGTGTAGTAC
* *
37164962 TAAGTGAAGGCTACAATGGGTACCGAAAAGCTTTG-G
66 TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGAG
* * * * *
37164998 TCACGTATGTAGTACTATGTGAAGGCTACTACGTG-AGCTGTAAAACT-TGATCACGTGTGTAGT
1 -CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGT-AAACTATGGTCACATGTGTAGT
* * * * *
37165061 ACTATGTGAAGGCTACTACGTGAACTGTAAAA-C--TGAT
64 ACTAAGTGAAGGCTACTATGTGTACCG-AAAAGCTTTGAG
*
37165098 TACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCG
37165137 AATGATAAAA
Statistics
Matches: 209, Mismatches: 25, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
99 34 0.16
100 2 0.01
101 40 0.19
102 132 0.63
103 1 0.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (102 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGTAAACTATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGAG
Found at i:37166583 original size:16 final size:16
Alignment explanation
Indices: 37166558--37166591 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
37166548 AGATGATATC
*
37166558 CTTTACTTTTCTTTTG
1 CTTTACTTTTATTTTG
*
37166574 CTTTAGTTTTATTTTG
1 CTTTACTTTTATTTTG
37166590 CT
1 CT
37166592 ATTTTCTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.09, C:0.15, G:0.09, T:0.68
Consensus pattern (16 bp):
CTTTACTTTTATTTTG
Found at i:37169564 original size:35 final size:37
Alignment explanation
Indices: 37169490--37169569 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 37
37169480 TACGAAATTT
**
37169490 TTTTTGAAACAAGAGAATTTTTTTAAAGCACGGAAAC
1 TTTTTGAAACAAGAGAATTTTTAGAAAGCACGGAAAC
* *
37169527 TTTTTGAAATACGAGAA-TTTTAGAAA-CACGGAAAC
1 TTTTTGAAACAAGAGAATTTTTAGAAAGCACGGAAAC
37169562 -TTTTGAAA
1 TTTTTGAAA
37169570 ACACAAAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
34 8 0.21
35 9 0.23
36 7 0.18
37 15 0.38
ACGTcount: A:0.41, C:0.10, G:0.16, T:0.33
Consensus pattern (37 bp):
TTTTTGAAACAAGAGAATTTTTAGAAAGCACGGAAAC
Found at i:37169589 original size:35 final size:34
Alignment explanation
Indices: 37169510--37169591 Score: 94
Period size: 35 Copynumber: 2.4 Consensus size: 34
37169500 AAGAGAATTT
* * * *
37169510 TTTTAAAGCACGGAAACTTTTTGAAATACGAGAA
1 TTTTAAAACACGGAAACTTTTTGAAACACAAAAA
37169544 TTTTAGAAACACGGAAAC-TTTTGAAAACACAAAAA
1 TTTTA-AAACACGGAAACTTTTTG-AAACACAAAAA
37169579 TTCTTAAAACACG
1 TT-TTAAAACACG
37169592 AAAATTTGCA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
34 10 0.24
35 28 0.68
36 3 0.07
ACGTcount: A:0.45, C:0.15, G:0.13, T:0.27
Consensus pattern (34 bp):
TTTTAAAACACGGAAACTTTTTGAAACACAAAAA
Found at i:37169634 original size:18 final size:18
Alignment explanation
Indices: 37169490--37169838 Score: 156
Period size: 17 Copynumber: 19.4 Consensus size: 18
37169480 TACGAAATTT
* *
37169490 TTTTTGAAACAAGAGAAT
1 TTTTTGAAACACGAGAAA
*
37169508 TTTTTTAAAGCACG-GAAA
1 TTTTTGAAA-CACGAGAAA
*
37169526 CTTTTTGAAATACGAG-AA
1 -TTTTTGAAACACGAGAAA
*
37169544 TTTTAGAAACACG-GAAA
1 TTTTTGAAACACGAGAAA
* *
37169561 CTTTTGAAAACAC-AAAAA
1 TTTTTG-AAACACGAGAAA
* *
37169579 TTCTTAAAACACGA-AAA
1 TTTTTGAAACACGAGAAA
*
37169596 --TTTGCAAA-ACGCGACAA
1 TTTTTG-AAACACGAGA-AA
*
37169613 TTTTTGAAACATGAGAAA
1 TTTTTGAAACACGAGAAA
37169631 TTTTTTTGAGAACACGA-AAA
1 --TTTTTGA-AACACGAGAAA
* * **
37169651 -TTTTAAAACAGGAGATTTT
1 TTTTTGAAACACGAGA--AA
*
37169670 TTTTTAAAACACG-GAAA
1 TTTTTGAAACACGAGAAA
* *
37169687 CTTTTTGAAATATGAG-AA
1 -TTTTTGAAACACGAGAAA
** *
37169705 TTTTAAAAACAC-AAAAA
1 TTTTTGAAACACGAGAAA
*** *
37169722 TTTACAAAACTCGAG-AA
1 TTTTTGAAACACGAGAAA
37169739 TTTTTGAAAACACGAG-AA
1 TTTTTG-AAACACGAGAAA
* *
37169757 TTTTTGAAACAAGAGAAT
1 TTTTTGAAACACGAGAAA
*
37169775 TTTTTGAAAACACGAGAAT
1 TTTTTG-AAACACGAGAAA
* *
37169794 TTTTTAAAAAAACACGA-AGA
1 TTTTT---GAAACACGAGAAA
*
37169814 TTTGTGAAACACGAG-AA
1 TTTTTGAAACACGAGAAA
37169831 TTTTTGAA
1 TTTTTGAA
37169839 TACGAGAATT
Statistics
Matches: 248, Mismatches: 52, Indels: 63
0.68 0.14 0.17
Matches are distributed among these distances:
15 5 0.02
16 12 0.05
17 82 0.33
18 70 0.28
19 39 0.16
20 26 0.10
21 14 0.06
ACGTcount: A:0.45, C:0.11, G:0.14, T:0.30
Consensus pattern (18 bp):
TTTTTGAAACACGAGAAA
Found at i:37169638 original size:20 final size:20
Alignment explanation
Indices: 37169613--37169654 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
37169603 AACGCGACAA
*
37169613 TTTTTGA-AACATGAGAAATT
1 TTTTTGAGAACACGA-AAATT
37169633 TTTTTGAGAACACGAAAATT
1 TTTTTGAGAACACGAAAATT
37169653 TT
1 TT
37169655 AAAACAGGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.40
Consensus pattern (20 bp):
TTTTTGAGAACACGAAAATT
Found at i:37169749 original size:35 final size:35
Alignment explanation
Indices: 37169700--37169787 Score: 88
Period size: 35 Copynumber: 2.5 Consensus size: 35
37169690 TTTGAAATAT
* **
37169700 GAGAA-TTTTAAAAACACAAAAATTTACAAAACTC
1 GAGAATTTTTGAAAACACAAAAATTTACAAAACAA
* * ***
37169734 GAGAATTTTTGAAAACACGAGAATTTTTGAAACAA
1 GAGAATTTTTGAAAACACAAAAATTTACAAAACAA
37169769 GAGAATTTTTTGAAAACAC
1 GAGAA-TTTTTGAAAACAC
37169788 GAGAATTTTT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
34 5 0.11
35 26 0.59
36 13 0.30
ACGTcount: A:0.49, C:0.11, G:0.12, T:0.27
Consensus pattern (35 bp):
GAGAATTTTTGAAAACACAAAAATTTACAAAACAA
Found at i:37169760 original size:17 final size:17
Alignment explanation
Indices: 37169528--37169921 Score: 114
Period size: 17 Copynumber: 22.2 Consensus size: 17
37169518 CACGGAAACT
*
37169528 TTTTG-AAATACGAGAA
1 TTTTGAAAACACGAGAA
37169544 TTTT-AGAAACACG-GAAA
1 TTTTGA-AAACACGAG-AA
* *
37169561 CTTTTGAAAACACAAAAA
1 -TTTTGAAAACACGAGAA
37169579 TTCTT-AAAACACGA-AA
1 TT-TTGAAAACACGAGAA
* * *
37169595 ATTTGCAAAACGCGACAA
1 TTTTG-AAAACACGAGAA
*
37169613 TTTTTG-AAACATGAGAAA
1 -TTTTGAAAACACGAG-AA
* *
37169631 TTTTTTTGAGAACACGAAAA
1 ---TTTTGAAAACACGAGAA
* *
37169651 TTTT-AAAACAGGAGATTTT
1 TTTTGAAAACACGAGA---A
*
37169670 TTTTTAAAACACG-GAAA
1 TTTTGAAAACACGAG-AA
* *
37169687 CTTTTTG-AAATATGAGAA
1 --TTTTGAAAACACGAGAA
* * *
37169705 TTTTAAAAACACAAAAA
1 TTTTGAAAACACGAGAA
** *
37169722 TTTACAAAACTCGAGAA
1 TTTTGAAAACACGAGAA
37169739 TTTTTGAAAACACGAGAA
1 -TTTTGAAAACACGAGAA
*
37169757 TTTTTG-AAACAAGAGAA
1 -TTTTGAAAACACGAGAA
37169774 TTTTTTGAAAACACGAGAA
1 --TTTTGAAAACACGAGAA
*
37169793 TTTTTTAAAAAAACACGA-AGA
1 --TTTT--GAAAACACGAGA-A
37169814 TTTGTG-AAACACGAGAA
1 TTT-TGAAAACACGAGAA
*
37169831 TTTTTG--AATACGAGAA
1 -TTTTGAAAACACGAGAA
** *
37169847 TTTAAAAAAAACACGAAAA
1 TTT--TGAAAACACGAGAA
* ** *
37169866 TCTACAAAAAACGAGAA
1 TTTTGAAAACACGAGAA
*
37169883 TTTTTGAAAACACGAAAA
1 -TTTTGAAAACACGAGAA
* * *
37169901 TTTTTAGAACACGGGAA
1 TTTTGAAAACACGAGAA
37169918 TTTT
1 TTTT
37169922 ATTTTAAAAT
Statistics
Matches: 283, Mismatches: 57, Indels: 75
0.68 0.14 0.18
Matches are distributed among these distances:
15 5 0.02
16 29 0.10
17 104 0.37
18 67 0.24
19 44 0.16
20 18 0.06
21 16 0.06
ACGTcount: A:0.47, C:0.11, G:0.14, T:0.28
Consensus pattern (17 bp):
TTTTGAAAACACGAGAA
Found at i:37169773 original size:144 final size:142
Alignment explanation
Indices: 37169562--37169905 Score: 342
Period size: 144 Copynumber: 2.4 Consensus size: 142
37169552 ACACGGAAAC
* * * * *
37169562 TTTTGAAAACACAAAAATTCT-TAAAACACGA-AA-ATTTGCAAAACGCGACAATTTTTGAAACA
1 TTTTAAAAACACAAAAATT-TACAAAACACGAGAATTTTTG-AAAACACGAAAATTTTTGAAACA
* * * ** *** *
37169624 TGAGAAATTTTTTTGAGAACACGA-AA-ATTTTAAAACAGGA-GATTTTTTTTTAAAACACG-GA
64 AGAG-AA-TTTTTTGAAAACACGAGAATATTTTAAAAAAACACGA-AGATTTGTAAAACACGAG-
*
37169685 AACTTTTTGAAATATGAGAA
125 AA-TTTTTG-AATACGAGAA
* *
37169705 TTTTAAAAACACAAAAATTTACAAAACTCGAGAATTTTTGAAAACACGAGAATTTTTGAAACAAG
1 TTTTAAAAACACAAAAATTTACAAAACACGAGAATTTTTGAAAACACGAAAATTTTTGAAACAAG
* *
37169770 AGAATTTTTTGAAAACACGAGAATTTTTTAAAAAAACACGAAGATTTGTGAAACACGAGAATTTT
66 AGAATTTTTTGAAAACACGAGAATATTTTAAAAAAACACGAAGATTTGTAAAACACGAGAATTTT
37169835 TGAATACGAGAA
131 TGAATACGAGAA
* * * *
37169847 TTTAAAAAAAACACGAAAATCTACAAAAAACGAGAATTTTTGAAAACACGAAAATTTTT
1 TTT--TAAAAACACAAAAATTTACAAAACACGAGAATTTTTGAAAACACGAAAATTTTT
37169906 AGAACACGGG
Statistics
Matches: 168, Mismatches: 24, Indels: 17
0.80 0.11 0.08
Matches are distributed among these distances:
142 28 0.17
143 36 0.21
144 97 0.58
145 7 0.04
ACGTcount: A:0.47, C:0.11, G:0.13, T:0.29
Consensus pattern (142 bp):
TTTTAAAAACACAAAAATTTACAAAACACGAGAATTTTTGAAAACACGAAAATTTTTGAAACAAG
AGAATTTTTTGAAAACACGAGAATATTTTAAAAAAACACGAAGATTTGTAAAACACGAGAATTTT
TGAATACGAGAA
Found at i:37169778 original size:161 final size:162
Alignment explanation
Indices: 37169507--37169798 Score: 374
Period size: 161 Copynumber: 1.8 Consensus size: 162
37169497 AACAAGAGAA
* * * * **
37169507 TTTTTTTAAAGCACGGAAACTTTTTGAAATACGAGAATTTTAGAAACACGGAAACTTTTGAAAAC
1 TTTTTTTAAAACACGGAAACTTTTTGAAATACGAGAATTTTAAAAACACGAAAAATTTACAAAAC
** *
37169572 ACAAAAATTCTTAAAACACGAAAATTTGCAAAACGCGACAA-TTTTTG-AAACATGAGAAATTTT
66 ACAAAAATTCTTAAAACACGAAAATTTGCAAAACAAGACAATTTTTTGAAAACACGAG-AATTTT
37169635 TTTGAGAACACGAAAATTTTAAAACAGGAGATT
130 TTTGAGAACACGAAAATTTTAAAACAGGAGATT
*
37169668 TTTTTTTAAAACACGGAAACTTTTTGAAATATGAGAATTTTAAAAACAC-AAAAATTTACAAAAC
1 TTTTTTTAAAACACGGAAACTTTTTGAAATACGAGAATTTTAAAAACACGAAAAATTTACAAAAC
* * * * * *** *
37169732 TCGAGAATTTTTGAAAACACGAGAATTTTTGAAACAAGAGAATTTTTTGAAAACACGAGAATTTT
66 ACAAAAATTCTT-AAAACACGAAAATTTGCAAAACAAGACAATTTTTTGAAAACACGAGAATTTT
37169797 TT
130 TT
37169799 AAAAAAACAC
Statistics
Matches: 109, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
160 19 0.17
161 68 0.62
162 14 0.13
163 8 0.07
ACGTcount: A:0.44, C:0.11, G:0.13, T:0.31
Consensus pattern (162 bp):
TTTTTTTAAAACACGGAAACTTTTTGAAATACGAGAATTTTAAAAACACGAAAAATTTACAAAAC
ACAAAAATTCTTAAAACACGAAAATTTGCAAAACAAGACAATTTTTTGAAAACACGAGAATTTTT
TTGAGAACACGAAAATTTTAAAACAGGAGATT
Found at i:37169810 original size:21 final size:19
Alignment explanation
Indices: 37169722--37169803 Score: 89
Period size: 19 Copynumber: 4.4 Consensus size: 19
37169712 AACACAAAAA
*
37169722 TTTACAAAACTCGAGAA-TT
1 TTTA-AAAACACGAGAATTT
*
37169741 TTTGAAAACACGAGAA-TT
1 TTTAAAAACACGAGAATTT
* *
37169759 TTT-GAAACAAGAGAATTT
1 TTTAAAAACACGAGAATTT
*
37169777 TTTGAAAACACGAGAATTT
1 TTTAAAAACACGAGAATTT
37169796 TTTAAAAA
1 TTTAAAAA
37169804 AACACGAAGA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
17 10 0.19
18 21 0.39
19 23 0.43
ACGTcount: A:0.45, C:0.10, G:0.13, T:0.32
Consensus pattern (19 bp):
TTTAAAAACACGAGAATTT
Found at i:37169822 original size:126 final size:125
Alignment explanation
Indices: 37169550--37169834 Score: 296
Period size: 126 Copynumber: 2.3 Consensus size: 125
37169540 AGAATTTTAG
* * * *
37169550 AAACACGGAAACTTT-TGAAAACACAAAAATTCTT-AAAACACGAAAATTTGCAAAACGCGACAA
1 AAACACGGAAACTTTGTG-AAACACGAGAATT-TTAAAAACACAAAAATTTACAAAACGCGACAA
* * * ***
37169613 TTTTTGAAACATGAGAAATTTTTTTGAGAACACGAAAATTTTAAAACAGGAGATTTTTTTTTA
64 TTTTTGAAACACGAGAAA-TTTTTTGAGAACAAGAAAATTTTAAAACACGAGATTTTTTAAAA
* * * * *
37169676 AAACACGGAAACTTTTTGAAATATGAGAATTTTAAAAACACAAAAATTTACAAAACTCGAGAATT
1 AAACACGGAAACTTTGTGAAACACGAGAATTTTAAAAACACAAAAATTTACAAAACGCGACAATT
*
37169741 TTTGAAAACACGAG-AA-TTTTTGA-AACAAGAGAATTTTTTGAAAACACGAGAATTTTTTAAAA
66 TTTG-AAACACGAGAAATTTTTTGAGAACAAGA-AA-ATTTT-AAAACACGAG-ATTTTTTAAAA
37169803 AAACAC-GAAGA-TTTGTGAAACACGAGAATTTT
1 AAACACGGAA-ACTTTGTGAAACACGAGAATTTT
37169835 TGAATACGAG
Statistics
Matches: 133, Mismatches: 18, Indels: 16
0.80 0.11 0.10
Matches are distributed among these distances:
123 6 0.05
124 9 0.07
125 6 0.05
126 87 0.65
127 25 0.19
ACGTcount: A:0.46, C:0.12, G:0.13, T:0.29
Consensus pattern (125 bp):
AAACACGGAAACTTTGTGAAACACGAGAATTTTAAAAACACAAAAATTTACAAAACGCGACAATT
TTTGAAACACGAGAAATTTTTTGAGAACAAGAAAATTTTAAAACACGAGATTTTTTAAAA
Found at i:37169892 original size:18 final size:18
Alignment explanation
Indices: 37169733--37169905 Score: 106
Period size: 18 Copynumber: 9.6 Consensus size: 18
37169723 TTACAAAACT
*
37169733 CGAGAATTTTTGAAAACA
1 CGAGAATTTTTGAAAAAA
*
37169751 CGAGAATTTTTGAAACAA
1 CGAGAATTTTTGAAAAAA
*
37169769 -GAGAATTTTTTGAAAACA
1 CGAGAA-TTTTTGAAAAAA
*
37169787 CGAGAATTTTTTAAAAAAA
1 CGAGAA-TTTTTGAAAAAA
* *
37169806 C-ACGAAGATTTGTG-AAACA
1 CGA-G-A-ATTTTTGAAAAAA
*
37169825 CGAGAATTTTTG--AATA
1 CGAGAATTTTTGAAAAAA
***
37169841 CGAGAATTTAAAAAAAACA
1 CGAGAATTTTTGAAAAA-A
* * **
37169860 CGA-AAATCTACAAAAAA
1 CGAGAATTTTTGAAAAAA
*
37169877 CGAGAATTTTTGAAAACA
1 CGAGAATTTTTGAAAAAA
*
37169895 CGAAAATTTTT
1 CGAGAATTTTT
37169906 AGAACACGGG
Statistics
Matches: 120, Mismatches: 25, Indels: 20
0.73 0.15 0.12
Matches are distributed among these distances:
16 12 0.10
17 15 0.12
18 58 0.48
19 28 0.23
20 6 0.05
21 1 0.01
ACGTcount: A:0.48, C:0.10, G:0.14, T:0.27
Consensus pattern (18 bp):
CGAGAATTTTTGAAAAAA
Found at i:37170667 original size:16 final size:16
Alignment explanation
Indices: 37170637--37170690 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
37170627 TTTTTTAAAT
37170637 TTTTTCTTCTT-TTTC
1 TTTTTCTTCTTCTTTC
*
37170652 TTTTTCTTTTTCTTTC
1 TTTTTCTTCTTCTTTC
* *
37170668 TTCTTCTTCTTCTTCC
1 TTTTTCTTCTTCTTTC
37170684 TTTTTCT
1 TTTTTCT
37170691 ACTTTTCTTC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
15 10 0.30
16 23 0.70
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTCTTCTTCTTTC
Found at i:37170667 original size:25 final size:26
Alignment explanation
Indices: 37170639--37170702 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 26
37170629 TTTTAAATTT
* *
37170639 TTTCTTCTTTTTCTT-TTTCTTTTTC
1 TTTCTTCTTCTTCTTCTTCCTTTTTC
37170664 TTTCTTCTTCTTCTTCTTCCTTTTTC
1 TTTCTTCTTCTTCTTCTTCCTTTTTC
*
37170690 -TACTT-TTCTTCTT
1 TTTCTTCTTCTTCTT
37170703 TCGAAAACCC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
24 8 0.23
25 18 0.51
26 9 0.26
ACGTcount: A:0.02, C:0.25, G:0.00, T:0.73
Consensus pattern (26 bp):
TTTCTTCTTCTTCTTCTTCCTTTTTC
Found at i:37170668 original size:22 final size:21
Alignment explanation
Indices: 37170637--37170703 Score: 66
Period size: 22 Copynumber: 3.1 Consensus size: 21
37170627 TTTTTTAAAT
* *
37170637 TTTTTCTTCTTTTTCTTTTTC
1 TTTTTCTTCTTCTTCTTCTTC
37170658 TTTTTCTTTCTTCTTCTTCTTC
1 TTTTTC-TTCTTCTTCTTCTTC
*
37170680 TTCCTTT-TTCTACTT-TTCTTC
1 TT--TTTCTTCTTCTTCTTCTTC
37170701 TTT
1 TTT
37170704 CGAAAACCCT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
19 1 0.03
21 14 0.35
22 22 0.55
24 3 0.08
ACGTcount: A:0.01, C:0.24, G:0.00, T:0.75
Consensus pattern (21 bp):
TTTTTCTTCTTCTTCTTCTTC
Found at i:37170673 original size:3 final size:3
Alignment explanation
Indices: 37170640--37170702 Score: 56
Period size: 3 Copynumber: 20.7 Consensus size: 3
37170630 TTTAAATTTT
* * * *
37170640 TTC TTC TTT TTC TTT TTC TTT TTC TTTC TTC TTC TTC TTC TTCC TTT
1 TTC TTC TTC TTC TTC TTC TTC TTC -TTC TTC TTC TTC TTC TT-C TTC
*
37170687 TTC TAC TT- TTC TTC TT
1 TTC TTC TTC TTC TTC TT
37170703 TCGAAAACCC
Statistics
Matches: 47, Mismatches: 10, Indels: 6
0.75 0.16 0.10
Matches are distributed among these distances:
2 2 0.04
3 39 0.83
4 6 0.13
ACGTcount: A:0.02, C:0.25, G:0.00, T:0.73
Consensus pattern (3 bp):
TTC
Found at i:37171110 original size:29 final size:29
Alignment explanation
Indices: 37171033--37171151 Score: 123
Period size: 29 Copynumber: 4.1 Consensus size: 29
37171023 GCCAAAATAT
* *
37171033 AATTTTATGAAAA-TTTAAGGGTCAAAATGT
1 AATTTTA--AAAAGTTTAGGGGTCAAAATGC
* * * * ***
37171063 AATTTCAAAAAGCTCAGGGTTCATGGTGC
1 AATTTTAAAAAGTTTAGGGGTCAAAATGC
*
37171092 AATTTTAAAAAGTTTAGGGGTCAAAATGT
1 AATTTTAAAAAGTTTAGGGGTCAAAATGC
37171121 AATTTTAAAAAGTTTAGGGGTCAAAATGC
1 AATTTTAAAAAGTTTAGGGGTCAAAATGC
37171150 AA
1 AA
37171152 AAAAATTAAA
Statistics
Matches: 70, Mismatches: 18, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
28 4 0.06
29 60 0.86
30 6 0.09
ACGTcount: A:0.40, C:0.08, G:0.20, T:0.32
Consensus pattern (29 bp):
AATTTTAAAAAGTTTAGGGGTCAAAATGC
Found at i:37171151 original size:58 final size:58
Alignment explanation
Indices: 37171033--37171151 Score: 141
Period size: 58 Copynumber: 2.0 Consensus size: 58
37171023 GCCAAAATAT
* ***
37171033 AATTTTATGAAAATTTAAGGGTCAAAATGTAATTTCAAAAAGCTCAGGGTTCATGGTGC
1 AATTTTA-GAAAATTTAAGGGTCAAAATGTAATTTCAAAAAGCTCAGGGGTCAAAATGC
* * * *
37171092 AATTTTA-AAAAGTTTAGGGGTCAAAATGTAATTTTAAAAAGTTTAGGGGTCAAAATGC
1 AATTTTAGAAAA-TTTAAGGGTCAAAATGTAATTTCAAAAAGCTCAGGGGTCAAAATGC
37171150 AA
1 AA
37171152 AAAAATTAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
57 4 0.08
58 40 0.78
59 7 0.14
ACGTcount: A:0.40, C:0.08, G:0.20, T:0.32
Consensus pattern (58 bp):
AATTTTAGAAAATTTAAGGGTCAAAATGTAATTTCAAAAAGCTCAGGGGTCAAAATGC
Found at i:37171990 original size:75 final size:75
Alignment explanation
Indices: 37171352--37172325 Score: 971
Period size: 77 Copynumber: 12.7 Consensus size: 75
37171342 CTCGGTGTGC
*
37171352 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG--AAAAATAGAATTTGAAAAG
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAATAGAA-AT-AAAA-
* *
37171415 AATACCTCGGCATGC
63 AATACCTCAGC--GT
* * * * * *
37171430 GACTCGAGGCTCAACTCACCCCTCGCAGTATGAGTTGATTTTTGAAAAACA-AGAATTGAAAAAT
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAATAGAAATAAAAAAT
* *
37171494 ACATCGGCGT
66 ACCTCAGCGT
37171504 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT--AAAAAATAGAAATTTAAAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAATAGAAA--T--AAA
* * *
37171567 AAATACGTCGGCAT
62 AAATACCTCAGCGT
** * * * *
37171581 GGTCCAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTCG--AAAAACAGAAATTTAAAGG
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAATAGAAA--TAAA--
* *
37171644 AAATACCTCGGCAT
62 AAATACCTCAGCGT
** * * *
37171658 GGTCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTGAAAAACATA-AATTTAAAAG
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAAAATAGAA-AT-AAA-
* *
37171722 AAATACCTCGGCAT
62 AAATACCTCAGCGT
***
37171736 GGTTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAAATAGAAATTTAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAAAATAGAAA--T-AA
37171801 AGAAATACCTCAGCGTGT
61 A-AAATACCTCAGC--GT
* *
37171819 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAAAACAAAAATTTAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG-AAAAAAATAGAAA--TAAA
37171884 AAATACCTCAGCGT
62 AAATACCTCAGCGT
* *
37171898 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAAATAGAAATAAAAAAT
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAATAGAAATAAAAAAT
37171963 ACCTCAGCGT
66 ACCTCAGCGT
* * * * * ** * *
37171973 GACCCAAGGCTCAACTCACCTTTTGTATTATGAGTTGA-TTTCAAAAAAAGACAGAAATTAAAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAA-ATAGAAATAAAAAA
37172037 TACCTCAGCGT
65 TACCTCAGCGT
* * * * *
37172048 GACCCGAGGCTCTACTCACCTCTCGTATTATGAGTTGA--TTTAAAAAAAGATAGAAATTAAAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAA-ATAGAAATAAAAAA
37172111 TACCTCAGCGT
65 TACCTCAGCGT
* * ** * *
37172122 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTAAAAAAAAAGACAGAAATTAAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-TGAAAAAA-ATAGAAATAAAAA
37172187 ATACCTCAGCGT
64 ATACCTCAGCGT
* * * *
37172199 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAAAAATAGAAATAAAAAA
* **
37172264 TATCTCATTGT
65 TACCTCAGCGT
* * *
37172275 GACCCGAGGCTCAACTCACCTCTCGTATTTTGAGTTGATTTTTGAAAAAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAA
37172326 GCATAAATTG
Statistics
Matches: 803, Mismatches: 66, Indels: 57
0.87 0.07 0.06
Matches are distributed among these distances:
72 5 0.01
73 4 0.00
74 121 0.15
75 121 0.15
76 77 0.10
77 207 0.26
78 106 0.13
79 62 0.08
80 11 0.01
81 29 0.04
82 10 0.01
83 50 0.06
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (75 bp):
GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAATAGAAATAAAAAAT
ACCTCAGCGT
Found at i:37179786 original size:24 final size:24
Alignment explanation
Indices: 37179740--37179788 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
37179730 AATATTTTTT
* ***
37179740 ACCAACTTTAAAATTTTTTTATTA
1 ACCAAATTTAAAATTTAAATATTA
37179764 ACCAAATTTAAAATTTAAATATTA
1 ACCAAATTTAAAATTTAAATATTA
37179788 A
1 A
37179789 AATTTAGTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.47, C:0.10, G:0.00, T:0.43
Consensus pattern (24 bp):
ACCAAATTTAAAATTTAAATATTA
Found at i:37180151 original size:26 final size:26
Alignment explanation
Indices: 37180121--37180174 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
37180111 CTCAAACTAG
*
37180121 AATCTAGATATCAAATTGTTCTCTAT
1 AATCTAGATATCAAATTGGTCTCTAT
* *
37180147 AATCTAGATTTTAAATTGGTCTCTAT
1 AATCTAGATATCAAATTGGTCTCTAT
37180173 AA
1 AA
37180175 ATTTTGATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.43
Consensus pattern (26 bp):
AATCTAGATATCAAATTGGTCTCTAT
Found at i:37180660 original size:72 final size:72
Alignment explanation
Indices: 37180543--37180686 Score: 279
Period size: 72 Copynumber: 2.0 Consensus size: 72
37180533 TTGATACATT
37180543 TATGTGGTGTAATATTATGCACTTGGACAATGTTCTTACTATGTGGTGTACCATTAATTATGTAT
1 TATGTGGTGTAATATTATGCACTTGGACAATGTTCTTACTATGTGGTGTACCATTAATTATGTAT
37180608 TTGGATA
66 TTGGATA
*
37180615 TATGTGGTGTAATATTATGCACTTGGACAATGTTGTTACTATGTGGTGTACCATTAATTATGTAT
1 TATGTGGTGTAATATTATGCACTTGGACAATGTTCTTACTATGTGGTGTACCATTAATTATGTAT
37180680 TTGGATA
66 TTGGATA
37180687 ATATTATTAT
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.26, C:0.09, G:0.22, T:0.43
Consensus pattern (72 bp):
TATGTGGTGTAATATTATGCACTTGGACAATGTTCTTACTATGTGGTGTACCATTAATTATGTAT
TTGGATA
Found at i:37180896 original size:14 final size:14
Alignment explanation
Indices: 37180877--37180904 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37180867 AGAATTTATT
37180877 AATATATATTAATA
1 AATATATATTAATA
37180891 AATATATATTAATA
1 AATATATATTAATA
37180905 TATGTAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
AATATATATTAATA
Found at i:37181044 original size:20 final size:20
Alignment explanation
Indices: 37181016--37181073 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
37181006 TATTTTCCAG
* *
37181016 TAAATCATTTTACAGAAAAA
1 TAAAACATTTTCCAGAAAAA
*
37181036 TAAAACATTTTCCAGAAAAG
1 TAAAACATTTTCCAGAAAAA
37181056 TAAAACATTTTCCAGAAA
1 TAAAACATTTTCCAGAAA
37181074 TCATTTTACG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.28
Consensus pattern (20 bp):
TAAAACATTTTCCAGAAAAA
Found at i:37181080 original size:14 final size:14
Alignment explanation
Indices: 37181057--37181096 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
37181047 CCAGAAAAGT
*
37181057 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
37181071 AAATCATTTTACGG
1 AAAACATTTTACAG
37181085 AAAACATTTTAC
1 AAAACATTTTAC
37181097 TGCCAAACAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:37187858 original size:20 final size:18
Alignment explanation
Indices: 37187833--37187882 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 18
37187823 TTGAGACAAT
37187833 ATTTTTTTAAAAATACGAAA
1 ATTTTTTTAAAAA-A-GAAA
* *
37187853 ATTTTTTTGAAACAAGAGA
1 ATTTTTTT-AAAAAAGAAA
37187872 ATTTTTTTAAA
1 ATTTTTTTAAA
37187883 GCACGGAACT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 3 0.11
19 11 0.41
20 9 0.33
21 4 0.15
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.44
Consensus pattern (18 bp):
ATTTTTTTAAAAAAGAAA
Found at i:37187876 original size:18 final size:18
Alignment explanation
Indices: 37187855--37188143 Score: 96
Period size: 17 Copynumber: 16.1 Consensus size: 18
37187845 ATACGAAAAT
*
37187855 TTTTTTGAAACAAGAGAA
1 TTTTTTGAAACACGAGAA
*
37187873 TTTTTTTAAAGCACG-GAA
1 TTTTTTGAAA-CACGAGAA
* *
37187891 CTTTTTGAAATACGAGAA
1 TTTTTTGAAACACGAGAA
* *
37187909 -TTTTAGAAACATGA-AA
1 TTTTTTGAAACACGAGAA
** *
37187925 ACTTTTGAAAACCCGA-AA
1 TTTTTTG-AAACACGAGAA
* * *
37187943 ATTCTTAAAACACGA-AA
1 TTTTTTGAAACACGAGAA
* *** * *
37187960 ATTTGCAAAACGCGACAA
1 TTTTTTGAAACACGAGAA
*
37187978 -TTTTTGAAACATGAGAAA
1 TTTTTTGAAACACGAG-AA
37187996 TTTTTTTGAGAACACGA-AA
1 -TTTTTTGA-AACACGAGAA
* *** *
37188015 ATTTACAAAACTCGAGAA
1 TTTTTTGAAACACGAGAA
*
37188033 -GTTTTGAAAACACGAGAA
1 TTTTTTG-AAACACGAGAA
* *
37188051 TTTTTT-AAACAAGAGAT
1 TTTTTTGAAACACGAGAA
* *
37188068 TTTTTTGAAAACAGGAGGAT
1 TTTTTTG-AAACACGA-GAA
* * *
37188088 TTTTTTAAAAAAAGACGAA
1 TTTTTTGAAACACGA-GAA
* *
37188107 GATTTGTGAAACACGAGAA
1 -TTTTTTGAAACACGAGAA
*
37188126 TTTTTT--AATACGAGAA
1 TTTTTTGAAACACGAGAA
37188142 TT
1 TT
37188144 AAAAAAAACA
Statistics
Matches: 201, Mismatches: 54, Indels: 34
0.70 0.19 0.12
Matches are distributed among these distances:
16 13 0.06
17 70 0.35
18 59 0.29
19 27 0.13
20 26 0.13
21 6 0.03
ACGTcount: A:0.43, C:0.11, G:0.16, T:0.31
Consensus pattern (18 bp):
TTTTTTGAAACACGAGAA
Found at i:37188003 original size:20 final size:20
Alignment explanation
Indices: 37187978--37188018 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
37187968 AACGCGACAA
*
37187978 TTTTTGA-AACATGAGAAATT
1 TTTTTGAGAACACGA-AAATT
37187998 TTTTTGAGAACACGAAAATT
1 TTTTTGAGAACACGAAAATT
37188018 T
1 T
37188019 ACAAAACTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (20 bp):
TTTTTGAGAACACGAAAATT
Found at i:37188018 original size:55 final size:55
Alignment explanation
Indices: 37187951--37188056 Score: 151
Period size: 55 Copynumber: 1.9 Consensus size: 55
37187941 AAATTCTTAA
* * *
37187951 AACACGAAAATTTGCAAAACGCGACAATTTTTG-AAACATGAGAAATTTTTTTGAG
1 AACACGAAAATTTACAAAACGCGACAAGTTTTGAAAACACGAG-AATTTTTTTGAG
* *
37188006 AACACGAAAATTTACAAAACTCGAGAAGTTTTGAAAACACGAGAATTTTTT
1 AACACGAAAATTTACAAAACGCGACAAGTTTTGAAAACACGAGAATTTTTT
37188057 AAACAAGAGA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
55 37 0.82
56 8 0.18
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.28
Consensus pattern (55 bp):
AACACGAAAATTTACAAAACGCGACAAGTTTTGAAAACACGAGAATTTTTTTGAG
Found at i:37188073 original size:19 final size:20
Alignment explanation
Indices: 37188034--37188102 Score: 67
Period size: 19 Copynumber: 3.7 Consensus size: 20
37188024 ACTCGAGAAG
* *
37188034 TTTTGAAAACACGA-GAATT
1 TTTTGAAAACAAGAGGATTT
37188053 TTTT--AAACAAGA-GATTT
1 TTTTGAAAACAAGAGGATTT
*
37188070 TTTTGAAAACAGGAGGATTT
1 TTTTGAAAACAAGAGGATTT
*
37188090 TTTT-AAAAAAAGA
1 TTTTGAAAACAAGA
37188103 CGAAGATTTG
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
17 15 0.36
19 18 0.43
20 9 0.21
ACGTcount: A:0.43, C:0.06, G:0.16, T:0.35
Consensus pattern (20 bp):
TTTTGAAAACAAGAGGATTT
Found at i:37188215 original size:17 final size:17
Alignment explanation
Indices: 37187875--37188207 Score: 94
Period size: 17 Copynumber: 18.8 Consensus size: 17
37187865 CAAGAGAATT
* * *
37187875 TTTTTAAAGCACGGAAC
1 TTTTTAAAACACGAAAA
* * *
37187892 TTTTTGAAATACGAGAA
1 TTTTTAAAACACGAAAA
*
37187909 -TTTTAGAAACATGAAAA
1 TTTTTA-AAACACGAAAA
* *
37187926 CTTTTGAAAACCCGAAAA
1 -TTTTTAAAACACGAAAA
*
37187944 TTCTTAAAACACGAAAA
1 TTTTTAAAACACGAAAA
** * *
37187961 TTTGCAAAACGCGACAA
1 TTTTTAAAACACGAAAA
* *
37187978 TTTTTGAAACATGAGAAA
1 TTTTTAAAACACGA-AAA
*
37187996 TTTTTTTGAGAACACGAAAA
1 --TTTTT-AAAACACGAAAA
** * *
37188016 TTTACAAAACTCGAGAAG
1 TTTTTAAAACACGA-AAA
* *
37188034 TTTTGAAAACACGAGAA
1 TTTTTAAAACACGAAAA
* * **
37188051 TTTTTTAAACAAGAGATT
1 TTTTTAAAACACGA-AAA
* **
37188069 TTTTTGAAAACAGGAGGATT
1 TTTTT-AAAACACGA--AAA
* *
37188089 TTTTTAAAAAAAGACGAAGA
1 TTTTT---AAAACACGAAAA
* * *
37188109 TTTGTGAAACACGAGAA
1 TTTTTAAAACACGAAAA
* * *
37188126 TTTTT-TAATACGAGAA
1 TTTTTAAAACACGAAAA
*** *
37188142 TTAAAAAAAACATGAAAA
1 TT-TTTAAAACACGAAAA
** *
37188160 TTTACAAAACACGATAA
1 TTTTTAAAACACGAAAA
*
37188177 TTCTTGAAAACACGAAAA
1 TT-TTTAAAACACGAAAA
37188195 TTTTTAAAACACG
1 TTTTTAAAACACG
37188208 GGAATTTTAT
Statistics
Matches: 224, Mismatches: 76, Indels: 32
0.67 0.23 0.10
Matches are distributed among these distances:
16 15 0.07
17 108 0.48
18 55 0.25
19 11 0.05
20 22 0.10
21 6 0.03
22 7 0.03
ACGTcount: A:0.46, C:0.12, G:0.14, T:0.29
Consensus pattern (17 bp):
TTTTTAAAACACGAAAA
Found at i:37188255 original size:17 final size:17
Alignment explanation
Indices: 37188233--37188296 Score: 74
Period size: 17 Copynumber: 3.6 Consensus size: 17
37188223 AATACACAAA
* *
37188233 TTTTGAAACACCAGAAT
1 TTTTGAAACACGAGGAT
*
37188250 TTTTGAAAACATGAGGAT
1 TTTTG-AAACACGAGGAT
*
37188268 TTTTGAAATACGAGGAT
1 TTTTGAAACACGAGGAT
37188285 TTTTGAAGACAC
1 TTTTGAA-ACAC
37188297 AAAAAACACA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
17 22 0.56
18 17 0.44
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.33
Consensus pattern (17 bp):
TTTTGAAACACGAGGAT
Found at i:37189246 original size:35 final size:35
Alignment explanation
Indices: 37189207--37189564 Score: 170
Period size: 34 Copynumber: 10.2 Consensus size: 35
37189197 AGAATTATAG
* * *
37189207 AAACACGAAAACTTTTAAAAACCCGAAAATTCTTA
1 AAACACGAAAATTTTTAAAAACACGAAAATTTTTA
* ** * * *
37189242 AAACAC-AAAAATTTGCAAAACGCGACAATTTTTG
1 AAACACGAAAATTTTTAAAAACACGAAAATTTTTA
* * *
37189276 AAACACGAGAAATTTTTTGAGAACACGAATA-TTTTA
1 AAACACGA-AAA-TTTTTAAAAACACGAAAATTTTTA
* * * *
37189312 AAACACGAGAATTTTTTTAAAACACGGAAACTTTTTG
1 AAACACGA-AAATTTTTAAAAACAC-GAAAATTTTTA
* * **
37189349 AAATACGAGAA-TTTTAAAAACACGAAAATTTACA
1 AAACACGAAAATTTTTAAAAACACGAAAATTTTTA
* * * ** *
37189383 AAACTCGAGAAGTTTTGTAAACACGAGAATTTTTA
1 AAACACGAAAATTTTTAAAAACACGAAAATTTTTA
* ** * ** *
37189418 AAACAAGAGATTTTTTTGAAAACACGAGGATTTTAAAAA
1 AAACACGA-AAATTTTTAAAAACACGAAAATTTT---TA
* * * * *
37189457 AAACGCGAAGATTTGT-GAAACACGAGAATTTTT-
1 AAACACGAAAATTTTTAAAAACACGAAAATTTTTA
* * * ** **
37189490 TAATACGAGAATTTAAAAAAACACGAAAATTTACA
1 AAACACGAAAATTTTTAAAAACACGAAAATTTTTA
* * *
37189525 AAACACGAGAATTGTT-GAAACACGAAAATTTTTA
1 AAACACGAAAATTTTTAAAAACACGAAAATTTTTA
37189559 AAACAC
1 AAACAC
37189565 AGGAATTTTA
Statistics
Matches: 239, Mismatches: 72, Indels: 25
0.71 0.21 0.07
Matches are distributed among these distances:
33 9 0.04
34 77 0.32
35 64 0.27
36 41 0.17
37 36 0.15
38 5 0.02
39 7 0.03
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.27
Consensus pattern (35 bp):
AAACACGAAAATTTTTAAAAACACGAAAATTTTTA
Found at i:37189291 original size:17 final size:17
Alignment explanation
Indices: 37189167--37189574 Score: 137
Period size: 17 Copynumber: 23.3 Consensus size: 17
37189157 AGAGAATTTT
*
37189167 TTTTAAAGCAC-AGAAA
1 TTTTAAAACACGAGAAA
* *
37189183 CTTTTTGAAATACGAG-AA
1 --TTTTAAAACACGAGAAA
*
37189201 TTATAGAAACACGA-AAA
1 TTTTA-AAACACGAGAAA
*
37189218 CTTTTAAAAACCCGA-AAA
1 -TTTT-AAAACACGAGAAA
*
37189236 TTCTTAAAACAC-AAAAA
1 TT-TTAAAACACGAGAAA
* * * *
37189253 TTTGCAAAACGCGACAAT
1 TTT-TAAAACACGAGAAA
*
37189271 TTTTGAAACACGAGAAA
1 TTTTAAAACACGAGAAA
* *
37189288 TTTTTTGAGAACACGA-ATA
1 --TTTT-AAAACACGAGAAA
*
37189307 TTTTAAAACACGAGAATTT
1 TTTTAAAACACGAGAA--A
37189326 TTTTAAAACACG-GAAA
1 TTTTAAAACACGAGAAA
* *
37189342 CTTTTTGAAATACGAG-AA
1 --TTTTAAAACACGAGAAA
37189360 TTTTAAAAACACGA-AAA
1 TTTT-AAAACACGAGAAA
* * *
37189377 TTTACAAAACTCGAGAAG
1 TTT-TAAAACACGAGAAA
* *
37189395 TTTTGTAAACACGAGAAT
1 TTTT-AAAACACGAGAAA
* **
37189413 TTTTAAAACAAGAGATTT
1 TTTTAAAACACGAGA-AA
*
37189431 TTTTGAAAACACGAG-GA
1 TTTT-AAAACACGAGAAA
* *
37189448 TTTTAAAAAAAACGCGAAGA
1 TTTT--AAAACACGAGAA-A
*
37189468 TTTGTGAAACACGAG-AA
1 TTT-TAAAACACGAGAAA
** *
37189485 TTTTTTAATACGAG-AA
1 TTTTAAAACACGAGAAA
*
37189501 TTTAAAAAAACACGA-AAA
1 TTT--TAAAACACGAGAAA
*
37189519 TTTACAAAACACGAG-AA
1 TTT-TAAAACACGAGAAA
*
37189536 TTGTTGAAACACGA-AAA
1 TT-TTAAAACACGAGAAA
*
37189553 TTTTTAAAACAC-AGGAA
1 -TTTTAAAACACGAGAAA
37189570 TTTTA
1 TTTTA
37189575 TTTTAAAATA
Statistics
Matches: 292, Mismatches: 61, Indels: 76
0.68 0.14 0.18
Matches are distributed among these distances:
16 36 0.12
17 113 0.39
18 93 0.32
19 38 0.13
20 11 0.04
21 1 0.00
ACGTcount: A:0.47, C:0.12, G:0.13, T:0.27
Consensus pattern (17 bp):
TTTTAAAACACGAGAAA
Found at i:37189317 original size:36 final size:34
Alignment explanation
Indices: 37189253--37189573 Score: 154
Period size: 35 Copynumber: 9.0 Consensus size: 34
37189243 AACACAAAAA
* *
37189253 TTTGCAAAACGCGACAATTTTTGAAACACGAGAAATTT
1 TTTG-AAAACACGA-AA-TTTTAAAACACGAG-AATTT
*
37189291 TTTGAGAACACGAATATTTTAAAACACGAGAATTT
1 TTTGAAAACACGAA-ATTTTAAAACACGAGAATTT
* * *
37189326 TTTTAAAACACGGAAACTTTTTGAAATACGAGAA--T
1 TTTGAAAACAC-GAAA--TTTTAAAACACGAGAATTT
* * * *
37189361 TTTAAAAACACGAAAATTTACAAAACTCGAGAA-GT
1 TTTGAAAACACG-AAATTT-TAAAACACGAGAATTT
* * *
37189396 TTTGTAAACACGAGAATTTTTAAAACAAGAGATTTT
1 TTTGAAAACACGA-AA-TTTTAAAACACGAGAATTT
* * * *
37189432 TTTGAAAACACGAGGATTTTAAAAAAAACGCGAAGATT
1 TTTGAAAACACGA-AATTTT--AAAACACGAGAA-TTT
* ** *
37189470 TGTG-AAACACGAGAATTTTTTAATACGAGAA-TT
1 TTTGAAAACACGA-AATTTTAAAACACGAGAATTT
*** *
37189503 TAAAAAAACACGAAAATTTACAAAACACGAGAA-TT
1 TTTGAAAACACG-AAATTT-TAAAACACGAGAATTT
*
37189538 GTTG-AAACACGAAAATTTTTAAAACAC-AGGAATTT
1 TTTGAAAACACG-AAA-TTTTAAAACACGA-GAATTT
37189573 T
1 T
37189574 ATTTTAAAAT
Statistics
Matches: 219, Mismatches: 45, Indels: 41
0.72 0.15 0.13
Matches are distributed among these distances:
33 7 0.03
34 44 0.20
35 80 0.37
36 35 0.16
37 44 0.20
38 9 0.04
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.28
Consensus pattern (34 bp):
TTTGAAAACACGAAATTTTAAAACACGAGAATTT
Found at i:37189347 original size:54 final size:55
Alignment explanation
Indices: 37189164--37189445 Score: 196
Period size: 52 Copynumber: 5.3 Consensus size: 55
37189154 ACAAGAGAAT
* * * *
37189164 TTTTTTTAAAGCAC-AGAAACTTTTTGAAATACGAGAATTATAGAAACACGAAAA
1 TTTTTTTAAAACACGAGAAACTTTTTGAAACACGAGAATTTTAAAAACACGAAAA
* * * * * * * ** * *
37189218 -CTTTTAAAAACCCGA-AAA-TTCTTAAAACACAAAAATTTGCAAAACGCGACAA
1 TTTTTTTAAAACACGAGAAACTTTTTGAAACACGAGAATTTTAAAAACACGAAAA
* * *
37189270 --TTTTTGAAACACGAGAAATTTTTTGAGAACACGA-ATATTTT-AAAACACGAGAA
1 TTTTTTTAAAACACGAGAAACTTTTTGA-AACACGAGA-ATTTTAAAAACACGAAAA
*
37189323 TTTTTTTAAAACACG-GAAACTTTTTGAAATACGAGAATTTTAAAAACACGAAAA
1 TTTTTTTAAAACACGAGAAACTTTTTGAAACACGAGAATTTTAAAAACACGAAAA
** * * * * *
37189377 --TTTACAAAACTCGAG-AA-GTTTTGTAAACACGAGAATTTTTAAAACAAG-AGA
1 TTTTTTTAAAACACGAGAAACTTTTTG-AAACACGAGAATTTTAAAAACACGAAAA
37189428 TTTTTTTGAAAACACGAG
1 TTTTTTT-AAAACACGAG
37189446 GATTTTAAAA
Statistics
Matches: 175, Mismatches: 39, Indels: 28
0.72 0.16 0.12
Matches are distributed among these distances:
51 18 0.10
52 59 0.34
53 43 0.25
54 43 0.25
55 12 0.07
ACGTcount: A:0.45, C:0.13, G:0.13, T:0.29
Consensus pattern (55 bp):
TTTTTTTAAAACACGAGAAACTTTTTGAAACACGAGAATTTTAAAAACACGAAAA
Found at i:37189592 original size:21 final size:21
Alignment explanation
Indices: 37189554--37189594 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
37189544 ACACGAAAAT
**
37189554 TTTTAAAACACAGGAATTTTA
1 TTTTAAAACACAAAAATTTTA
*
37189575 TTTTAAAATACAAAAATTTT
1 TTTTAAAACACAAAAATTTT
37189595 GAAATACCGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.07, G:0.05, T:0.41
Consensus pattern (21 bp):
TTTTAAAACACAAAAATTTTA
Found at i:37189629 original size:18 final size:17
Alignment explanation
Indices: 37189591--37189649 Score: 68
Period size: 17 Copynumber: 3.4 Consensus size: 17
37189581 AATACAAAAA
*
37189591 TTTTGAAATACCG-GAAT
1 TTTTGAAATA-CGAGGAT
37189608 TTTTGAAA-ACATGAGGAT
1 TTTTGAAATAC--GAGGAT
37189626 TTTTGAAATACGAGGAT
1 TTTTGAAATACGAGGAT
37189643 TTTTGAA
1 TTTTGAA
37189650 GACACAAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
15 1 0.03
16 1 0.03
17 22 0.59
18 11 0.30
19 2 0.05
ACGTcount: A:0.36, C:0.07, G:0.20, T:0.37
Consensus pattern (17 bp):
TTTTGAAATACGAGGAT
Found at i:37189636 original size:141 final size:141
Alignment explanation
Indices: 37189259--37189644 Score: 349
Period size: 141 Copynumber: 2.7 Consensus size: 141
37189249 AAAATTTGCA
* * * * * * * * * *
37189259 AAACGCGACAATTTTTGAAACACGAGAAATTTTTTGAGAACACGAATATTTT-AAAACACGAGAA
1 AAACACGAAAATTTTTAAAACAAGAG-ATTTTTTTGAAAACACAAAAATTTTAAAAAAACGCGAA
** * * *
37189323 TTTTTTTAAAACACG-GAAACTTTTTGAAATACGAGAATTTTAAAAACACGAAAATTTACAAAAC
65 GATTTGTGAAACACGAG-AA-TTTTTGAAATACGAGAATTTAAAAAACACGAAAATTTACAAAAC
*
37189387 TCGAGAAGTTTTGT
128 ACGAGAAGTTTTGT
* * **
37189401 AAACACGAGAATTTTTAAAACAAGAGATTTTTTTGAAAACACGAGGATTTTAAAAAAAACGCGAA
1 AAACACGAAAATTTTTAAAACAAGAGATTTTTTTGAAAACACAAAAATTTT-AAAAAAACGCGAA
*
37189466 GATTTGTGAAACACGAGAATTTTT-TAATACGAGAATTTAAAAAAACACGAAAATTTACAAAACA
65 GATTTGTGAAACACGAGAATTTTTGAAATACGAGAATTT-AAAAAACACGAAAATTTACAAAACA
37189530 CGAGAA-TTGTTG-
129 CGAGAAGTT-TTGT
* * * *
37189542 AAACACGAAAATTTTTAAAACACAG-GAATTTTATTTTAAAATACAAAAATTTT-GAAATAC-CG
1 AAACACGAAAATTTTTAAAACA-AGAG-ATTTT-TTTGAAAACACAAAAATTTTAAAAAAACGCG
* * * * *
37189604 GA-ATTTTTGAAAACATGAGGATTTTTGAAATACGAGGATTT
63 AAGATTTGTG-AAACACGAGAATTTTTGAAATACGAGAATTT
37189645 TTGAAGACAC
Statistics
Matches: 203, Mismatches: 31, Indels: 21
0.80 0.12 0.08
Matches are distributed among these distances:
139 6 0.03
140 17 0.08
141 75 0.37
142 66 0.33
143 38 0.19
144 1 0.00
ACGTcount: A:0.45, C:0.11, G:0.15, T:0.29
Consensus pattern (141 bp):
AAACACGAAAATTTTTAAAACAAGAGATTTTTTTGAAAACACAAAAATTTTAAAAAAACGCGAAG
ATTTGTGAAACACGAGAATTTTTGAAATACGAGAATTTAAAAAACACGAAAATTTACAAAACACG
AGAAGTTTTGT
Found at i:37190290 original size:13 final size:13
Alignment explanation
Indices: 37190272--37190324 Score: 52
Period size: 13 Copynumber: 3.8 Consensus size: 13
37190262 TTTTAAATTT
37190272 TTTCTTCTTTTTC
1 TTTCTTCTTTTTC
37190285 TTTCTTCTTCTTCTTC
1 TTTCTTC-T-TT-TTC
* *
37190301 TTCCTTCTTCTTC
1 TTTCTTCTTTTTC
37190314 TTTTCTTCTTT
1 -TTTCTTCTTT
37190325 CGGAAACCCT
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
13 10 0.31
14 10 0.31
15 3 0.09
16 9 0.28
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTCTTCTTTTTC
Found at i:37190292 original size:3 final size:3
Alignment explanation
Indices: 37190273--37190323 Score: 68
Period size: 3 Copynumber: 16.7 Consensus size: 3
37190263 TTTAAATTTT
*
37190273 TTC TTC TTT TTC TTTC TTC TTC TTC TTC TTCC TTC TTC TTC TT- TTC
1 TTC TTC TTC TTC -TTC TTC TTC TTC TTC TT-C TTC TTC TTC TTC TTC
37190319 TTC TT
1 TTC TT
37190324 TCGGAAACCC
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
2 2 0.05
3 35 0.81
4 6 0.14
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TTC
Found at i:37190294 original size:16 final size:16
Alignment explanation
Indices: 37190273--37190323 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 16
37190263 TTTAAATTTT
* *
37190273 TTCTTCTTTTTCTTTC
1 TTCTTCTTCTTCTTCC
37190289 TTCTTCTTCTTCTTCC
1 TTCTTCTTCTTCTTCC
37190305 TTCTTCTTCTT-TT-C
1 TTCTTCTTCTTCTTCC
37190319 TTCTT
1 TTCTT
37190324 TCGGAAACCC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.18
15 2 0.06
16 25 0.76
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (16 bp):
TTCTTCTTCTTCTTCC
Found at i:37195732 original size:31 final size:31
Alignment explanation
Indices: 37195694--37195755 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
37195684 CGCACACACA
37195694 ATGTTGGTGGTAGATACTTCTGTGAATGGTG
1 ATGTTGGTGGTAGATACTTCTGTGAATGGTG
*
37195725 ATGTTGGTGGTAGATGCTTCTGTGAATGGTG
1 ATGTTGGTGGTAGATACTTCTGTGAATGGTG
37195756 TTCTCTTGTC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.06, G:0.37, T:0.39
Consensus pattern (31 bp):
ATGTTGGTGGTAGATACTTCTGTGAATGGTG
Found at i:37197330 original size:39 final size:39
Alignment explanation
Indices: 37197276--37197416 Score: 194
Period size: 39 Copynumber: 3.6 Consensus size: 39
37197266 AACATGTTTT
*
37197276 TGAGTAATGTGATATATGCTTGAATGTTATGTGGTTATA
1 TGAGTAATGTGATATATGCTTGAATGTTATGTGATTATA
* *
37197315 TGAGTATTTTGATATATGCTT-AAGTGTTATGTGATTATA
1 TGAGTAATGTGATATATGCTTGAA-TGTTATGTGATTATA
* * * *
37197354 TGAGTATTGTGATATATGTTTAAATGTTATGTAATTATA
1 TGAGTAATGTGATATATGCTTGAATGTTATGTGATTATA
*
37197393 TGTGTAATGTGATATATGCTTGAA
1 TGAGTAATGTGATATATGCTTGAA
37197417 AGTGAATATG
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
38 2 0.02
39 86 0.96
40 2 0.02
ACGTcount: A:0.30, C:0.02, G:0.22, T:0.46
Consensus pattern (39 bp):
TGAGTAATGTGATATATGCTTGAATGTTATGTGATTATA
Found at i:37208646 original size:18 final size:18
Alignment explanation
Indices: 37208623--37208657 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37208613 CCCTCATCCT
* *
37208623 CTAAGGGGAAGTAGAAAG
1 CTAAGGGAAAGAAGAAAG
37208641 CTAAGGGAAAGAAGAAA
1 CTAAGGGAAAGAAGAAA
37208658 CCAACTGAGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.06, G:0.34, T:0.09
Consensus pattern (18 bp):
CTAAGGGAAAGAAGAAAG
Found at i:37221432 original size:22 final size:22
Alignment explanation
Indices: 37221407--37221453 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
37221397 CTAAGAACAG
* * *
37221407 TAAACAGGATAGCTATAAGCTA
1 TAAACAGAATAGCTACAAGCCA
*
37221429 TAAACAGAATGGCTACAAGCCA
1 TAAACAGAATAGCTACAAGCCA
37221451 TAA
1 TAA
37221454 GTACAGTAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (22 bp):
TAAACAGAATAGCTACAAGCCA
Found at i:37221507 original size:32 final size:32
Alignment explanation
Indices: 37221445--37221554 Score: 114
Period size: 32 Copynumber: 3.5 Consensus size: 32
37221435 GAATGGCTAC
* ***
37221445 AAGCCATAAGTA-CAGTAATATGATTGGCACA
1 AAGCCATCAGTAGCAGTAATATGACCAGCACA
* *
37221476 AAGCCATCAGTTGCAGTGATATGACCAGCACA
1 AAGCCATCAGTAGCAGTAATATGACCAGCACA
* * * * *
37221508 CAGCCCTCAGTAGCGGTAATATGACCGGTACA
1 AAGCCATCAGTAGCAGTAATATGACCAGCACA
37221540 AAGCCATCAGTAGCA
1 AAGCCATCAGTAGCA
37221555 TCACAGCAAA
Statistics
Matches: 62, Mismatches: 16, Indels: 1
0.78 0.20 0.01
Matches are distributed among these distances:
31 10 0.16
32 52 0.84
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.19
Consensus pattern (32 bp):
AAGCCATCAGTAGCAGTAATATGACCAGCACA
Found at i:37221625 original size:27 final size:27
Alignment explanation
Indices: 37221595--37221654 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
37221585 AACAAAGTTG
* *
37221595 CCAGTAATAGT-ATATGTGGCCAAGCTA
1 CCAGTAATAGTGAT-TGTGGCAAAGCCA
37221622 CCAGTAATAGTGATTGTGGCAAAGCCA
1 CCAGTAATAGTGATTGTGGCAAAGCCA
37221649 CCAGTA
1 CCAGTA
37221655 CAGTACTTCC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 28 0.93
28 2 0.07
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.23
Consensus pattern (27 bp):
CCAGTAATAGTGATTGTGGCAAAGCCA
Found at i:37221781 original size:24 final size:24
Alignment explanation
Indices: 37221726--37221807 Score: 92
Period size: 24 Copynumber: 3.4 Consensus size: 24
37221716 TGCTCAGAAG
** *
37221726 CAGTCATACAAATGACAGACAAAT
1 CAGTCATTTAAATCACAGACAAAT
*
37221750 CAGTCATTTAAATCACATACAAAT
1 CAGTCATTTAAATCACAGACAAAT
* * *
37221774 CAGTCATTTACATTACGGACAAAT
1 CAGTCATTTAAATCACAGACAAAT
*
37221798 CAATCATTTA
1 CAGTCATTTA
37221808 CACTTGAGGG
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.44, C:0.21, G:0.09, T:0.27
Consensus pattern (24 bp):
CAGTCATTTAAATCACAGACAAAT
Found at i:37221808 original size:24 final size:24
Alignment explanation
Indices: 37221740--37221809 Score: 95
Period size: 24 Copynumber: 2.9 Consensus size: 24
37221730 CATACAAATG
*
37221740 ACAGACAAATCAGTCATTTAAATC
1 ACAGACAAATCAGTCATTTACATC
* *
37221764 ACATACAAATCAGTCATTTACATT
1 ACAGACAAATCAGTCATTTACATC
* *
37221788 ACGGACAAATCAATCATTTACA
1 ACAGACAAATCAGTCATTTACA
37221810 CTTGAGGGGC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.27
Consensus pattern (24 bp):
ACAGACAAATCAGTCATTTACATC
Found at i:37221937 original size:27 final size:27
Alignment explanation
Indices: 37221825--37222116 Score: 193
Period size: 27 Copynumber: 10.9 Consensus size: 27
37221815 GGGGCGAAAT
37221825 AGTCA-TTTACCCT-CTA-GGGCATTAC
1 AGTCATTTTACCCTAC-AGGGGCATTAC
* * * *
37221850 GGTCATTTTACCTTA-AGGGGTATTTC
1 AGTCATTTTACCCTACAGGGGCATTAC
* * * * * *
37221876 GGTCATCTAATCCTA-TGGGGTATTAC
1 AGTCATTTTACCCTACAGGGGCATTAC
* * * * *
37221902 GGTTATTTTACCCTATAAGGGCATAAC
1 AGTCATTTTACCCTACAGGGGCATTAC
* **
37221929 AGTCATTTTACCCTATAGGGGGTTTTTA-
1 AGTCATTTTACCCTACA-GGGG-CATTAC
* *
37221957 AATCATTTTACCCTACAGGGGTATTAC
1 AGTCATTTTACCCTACAGGGGCATTAC
* **
37221984 GGTCATTTTACATTACAGGGGCATTAC
1 AGTCATTTTACCCTACAGGGGCATTAC
* *
37222011 GGTCATTTTACCCTACAGGGGCATTAG
1 AGTCATTTTACCCTACAGGGGCATTAC
* ** *
37222038 AGTCATTTTACCCTA-TGAGGGTTTTTC
1 AGTCATTTTACCCTACAG-GGGCATTAC
* *
37222065 AGTCATTTTACCCTACAGGGGTATTAT
1 AGTCATTTTACCCTACAGGGGCATTAC
* * *
37222092 GGTCATTTTACCTTATAGGGGCATT
1 AGTCATTTTACCCTACAGGGGCATT
37222117 TCGATTATTT
Statistics
Matches: 209, Mismatches: 49, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
25 5 0.02
26 50 0.24
27 133 0.64
28 19 0.09
29 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.37
Consensus pattern (27 bp):
AGTCATTTTACCCTACAGGGGCATTAC
Found at i:37222027 original size:54 final size:53
Alignment explanation
Indices: 37221841--37222116 Score: 218
Period size: 54 Copynumber: 5.1 Consensus size: 53
37221831 TTACCCTCTA
* * * * *
37221841 GGGCATTACGGTCATTTTACCTTA-AGGGGTATTTCGGTCATCTAATCC-TATG
1 GGGCATTACGGTCATTTTACCCTACAGGGGTATTACGGTCATTTTA-CCTTAAG
* * * * * * * *
37221893 GGGTATTACGGTTATTTTACCCTATAAGGGCATAACAGTCATTTTACCCTATAGG
1 GGGCATTACGGTCATTTTACCCTACAGGGGTATTACGGTCATTTTA-CCT-TAAG
** ** *
37221948 GGGTTTTTA-AATCATTTTACCCTACAGGGGTATTACGGTCATTTTACATTACAG
1 GGG-CATTACGGTCATTTTACCCTACAGGGGTATTACGGTCATTTTACCTTA-AG
* * *
37222002 GGGCATTACGGTCATTTTACCCTACAGGGGCATTA-GAGTCATTTTACCCTATG
1 GGGCATTACGGTCATTTTACCCTACAGGGGTATTACG-GTCATTTTACCTTAAG
** * * *
37222055 AGGGTTTTTCAGTCATTTTACCCTACAGGGGTATTATGGTCATTTTACCTTATAG
1 -GGGCATTACGGTCATTTTACCCTACAGGGGTATTACGGTCATTTTACCTTA-AG
37222110 GGGCATT
1 GGGCATT
37222117 TCGATTATTT
Statistics
Matches: 174, Mismatches: 40, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
52 21 0.12
53 23 0.13
54 89 0.51
55 37 0.21
56 4 0.02
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (53 bp):
GGGCATTACGGTCATTTTACCCTACAGGGGTATTACGGTCATTTTACCTTAAG
Found at i:37222127 original size:108 final size:109
Alignment explanation
Indices: 37221851--37222129 Score: 352
Period size: 108 Copynumber: 2.6 Consensus size: 109
37221841 GGGCATTACG
* * * *
37221851 GTCATTTTACCTTA-AGGGGTATT-TCGGTCATCTAATCC-TAT-GGGGTATTACGGTTATTTTA
1 GTCATTTTACCCTACAGGGGTATTAT-GGTCATTTTA-CCTTATAGGGGCATTACGGTTATTTTA
* *
37221912 CCCTATAAGGGCATAACAGTCATTTTACCCTATAGGGGGTTTTTAA
64 CCCTACAAGGGCATAACAGTCATTTTACCCTATAGAGGGTTTTTAA
* * * * *
37221958 ATCATTTTACCCTACAGGGGTATTACGGTCATTTTACATTACAGGGGCATTACGGTCATTTTACC
1 GTCATTTTACCCTACAGGGGTATTATGGTCATTTTACCTTATAGGGGCATTACGGTTATTTTACC
* * * *
37222023 CTACAGGGGCATTAGAGTCATTTTACCCTAT-GAGGGTTTTTCA
66 CTACAAGGGCATAACAGTCATTTTACCCTATAGAGGGTTTTTAA
* *
37222066 GTCATTTTACCCTACAGGGGTATTATGGTCATTTTACCTTATAGGGGCATTTCGATTATTTTAC
1 GTCATTTTACCCTACAGGGGTATTATGGTCATTTTACCTTATAGGGGCATTACGGTTATTTTAC
37222130 AAATATTGGG
Statistics
Matches: 146, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
107 13 0.09
108 86 0.59
109 47 0.32
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (109 bp):
GTCATTTTACCCTACAGGGGTATTATGGTCATTTTACCTTATAGGGGCATTACGGTTATTTTACC
CTACAAGGGCATAACAGTCATTTTACCCTATAGAGGGTTTTTAA
Found at i:37226835 original size:50 final size:50
Alignment explanation
Indices: 37226774--37226963 Score: 200
Period size: 51 Copynumber: 3.8 Consensus size: 50
37226764 ATTATTATCA
* * * *
37226774 TTCGACACACGTAGTAGCCTTCACGTAGTACTACACACGTTATCAAAATT
1 TTCGATACACGTAGTAGCCTGCACGTAGTACTACACACGTGACCAAAATT
* * * *
37226824 TTCGATGCACGTAGTAGCTTGCACATAGTACTACACACGTGACCAAAACCT
1 TTCGATACACGTAGTAGCCTGCACGTAGTACTACACACGTGACCAAAA-TT
* * * * * **
37226875 TCCGGTACACATAGTATCCTGCACGTAGTACTACACATGTGACCATTATCT
1 TTCGATACACGTAGTAGCCTGCACGTAGTACTACACACGTGACCAAAAT-T
* * *
37226926 ATCGATACAAGTAGTAGCCTGCACTTAGTACTACACAC
1 TTCGATACACGTAGTAGCCTGCACGTAGTACTACACAC
37226964 TTGTTTATAG
Statistics
Matches: 111, Mismatches: 27, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
50 41 0.37
51 70 0.63
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (50 bp):
TTCGATACACGTAGTAGCCTGCACGTAGTACTACACACGTGACCAAAATT
Found at i:37233205 original size:27 final size:27
Alignment explanation
Indices: 37233148--37233236 Score: 63
Period size: 28 Copynumber: 3.1 Consensus size: 27
37233138 AAATCTGTCG
*
37233148 AAAATAAATTAAAATTTATTAATATTATTTAT
1 AAAATTAATTAAAA-TTA--AATA-T-TTTAT
37233180 AAAATTAATTAAAATTAAATATTTTA-
1 AAAATTAATTAAAATTAAATATTTTAT
* * * *
37233206 ATAATTTAAGTACAATTTAATTATTTTAT
1 A-AAATTAATTA-AAATTAAATATTTTAT
37233235 AA
1 AA
37233237 TTATATTATA
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
26 1 0.02
27 12 0.24
28 15 0.31
29 5 0.10
31 3 0.06
32 13 0.27
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (27 bp):
AAAATTAATTAAAATTAAATATTTTAT
Found at i:37236567 original size:46 final size:46
Alignment explanation
Indices: 37236517--37236654 Score: 125
Period size: 51 Copynumber: 2.9 Consensus size: 46
37236507 GTAGTACTGT
*
37236517 GTGAAGGCTACCATGTGAATCGATAAATGATGGTCACATGTACTAA
1 GTGAAGGCTACAATGTGAATCGATAAATGATGGTCACATGTACTAA
* * * * * **
37236563 GTGAAGGCTACAATGTGTACCGAGAAGCT-TTGGTCACATGTGTGGTACTCT
1 GTGAAGGCTACAATGTGAATCGATAA-ATGATGGTCACA----T-GTACTAA
* *
37236614 GTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGT
1 GTGAAGGCTACAATGTGAATCGATAAATGATGGTCACATGT
37236655 GTAGTTCTAA
Statistics
Matches: 70, Mismatches: 15, Indels: 14
0.71 0.15 0.14
Matches are distributed among these distances:
46 32 0.46
47 2 0.03
50 2 0.03
51 34 0.49
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (46 bp):
GTGAAGGCTACAATGTGAATCGATAAATGATGGTCACATGTACTAA
Found at i:37236648 original size:51 final size:51
Alignment explanation
Indices: 37236500--37236781 Score: 274
Period size: 50 Copynumber: 5.7 Consensus size: 51
37236490 TATCGATGAA
* * * * **
37236500 CACATGTGTAGTACTGTGTGAAGGCTACCATGTGAATCGATAAATGATGGT
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATCTTGGT
* * * * * *
37236551 CACA----T-GTACTAAGTGAAGGCTACAATGTGTACCGA-GAAGCTTTGGT
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATC-TTGGT
* * * **
37236597 CACATGTGTGGTACTCTGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATCTTGGT
* * * *
37236648 CACATGTGTAGTTCTAAGTGAAGGCTACTACGTGAACCG-TAAAACTTGAT
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATCTTGGT
* * *
37236698 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGCT
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATCTTGGT
*
37236748 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTG
37236782 TATCGAATGA
Statistics
Matches: 192, Mismatches: 32, Indels: 15
0.80 0.13 0.06
Matches are distributed among these distances:
45 2 0.01
46 33 0.17
47 1 0.01
50 88 0.46
51 66 0.34
52 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (51 bp):
CACATGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATCTTGGT
Found at i:37239685 original size:12 final size:12
Alignment explanation
Indices: 37239668--37239692 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37239658 ATAACGGGTA
37239668 AGTGTATGAAGT
1 AGTGTATGAAGT
37239680 AGTGTATGAAGT
1 AGTGTATGAAGT
37239692 A
1 A
37239693 TAGTAAAGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32
Consensus pattern (12 bp):
AGTGTATGAAGT
Found at i:37247934 original size:37 final size:37
Alignment explanation
Indices: 37247858--37247934 Score: 104
Period size: 35 Copynumber: 2.1 Consensus size: 37
37247848 CTAAAGAATC
**
37247858 TATATATTGTTTAAATGGTGTCGCCCTAAAAGACCTA
1 TATATATTGTTTAAATGGTAACGCCCTAAAAGACCTA
* *
37247895 TATATATT-TTT-AATGGTAACGCCCTGAAGGACCTA
1 TATATATTGTTTAAATGGTAACGCCCTAAAAGACCTA
37247930 TATAT
1 TATAT
37247935 CATCATCACA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
35 25 0.69
36 3 0.08
37 8 0.22
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (37 bp):
TATATATTGTTTAAATGGTAACGCCCTAAAAGACCTA
Found at i:37252235 original size:21 final size:20
Alignment explanation
Indices: 37252174--37252235 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 20
37252164 TGATCAGTAA
*
37252174 ACGACACATAAGTGCCTGAA
1 ACGACACATAAGTGCCTGAT
* *
37252194 ACGACACACGAGGTGCCTGAT
1 ACGACACA-TAAGTGCCTGAT
37252215 ACGACACATAAAGTGCCTGAT
1 ACGACACAT-AAGTGCCTGAT
37252236 CGGCAAAGCC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
20 8 0.23
21 27 0.77
ACGTcount: A:0.35, C:0.26, G:0.23, T:0.16
Consensus pattern (20 bp):
ACGACACATAAGTGCCTGAT
Found at i:37252960 original size:13 final size:13
Alignment explanation
Indices: 37252944--37252969 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37252934 TTGCTTTTTC
37252944 TAATAATATAATA
1 TAATAATATAATA
37252957 TAATAATATAATA
1 TAATAATATAATA
37252970 GTTTTACTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TAATAATATAATA
Found at i:37260102 original size:26 final size:26
Alignment explanation
Indices: 37260073--37260123 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
37260063 GAGTCTGAGG
* * *
37260073 TTTGATTTTTTTTCTACTTACATTTC
1 TTTGATTCTTTTCCTACTCACATTTC
37260099 TTTGATTCTTTTCCTACTCACATTT
1 TTTGATTCTTTTCCTACTCACATTT
37260124 GTATTTTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.16, C:0.20, G:0.04, T:0.61
Consensus pattern (26 bp):
TTTGATTCTTTTCCTACTCACATTTC
Found at i:37261609 original size:15 final size:15
Alignment explanation
Indices: 37261565--37261609 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 15
37261555 TTTTTTAGGA
37261565 TTAAAGTTTAGAGTTT
1 TTAAA-TTTAGAGTTT
*
37261581 ATAAA-TTAGAGTTT
1 TTAAATTTAGAGTTT
*
37261595 TTAAATTTAGGGTTT
1 TTAAATTTAGAGTTT
37261610 AGAGTCTTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
14 13 0.52
15 8 0.32
16 4 0.16
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (15 bp):
TTAAATTTAGAGTTT
Found at i:37261935 original size:21 final size:21
Alignment explanation
Indices: 37261910--37261953 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
37261900 GGGTTCAAAA
37261910 AATATATCATGGGAATCTTGG
1 AATATATCATGGGAATCTTGG
* **
37261931 AATATATGATGGGTTTCTTGG
1 AATATATCATGGGAATCTTGG
37261952 AA
1 AA
37261954 AAAGACTGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.36
Consensus pattern (21 bp):
AATATATCATGGGAATCTTGG
Found at i:37270370 original size:23 final size:24
Alignment explanation
Indices: 37270333--37270385 Score: 99
Period size: 23 Copynumber: 2.2 Consensus size: 24
37270323 GTAAATTAAA
37270333 TATATTAATAATATATTTAATTTT
1 TATATTAATAATATATTTAATTTT
37270357 TATATT-ATAATATATTTAATTTT
1 TATATTAATAATATATTTAATTTT
37270380 TATATT
1 TATATT
37270386 GATAGAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 23 0.79
24 6 0.21
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (24 bp):
TATATTAATAATATATTTAATTTT
Found at i:37272638 original size:21 final size:21
Alignment explanation
Indices: 37272614--37272656 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
37272604 CAAAAAGTCC
* *
37272614 ATTTCTAGCCAACTAAATACT
1 ATTTCTAGCCAACCAAACACT
37272635 ATTTCTAGCCAACCAAACACT
1 ATTTCTAGCCAACCAAACACT
37272656 A
1 A
37272657 ATCAATCGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.28, G:0.05, T:0.28
Consensus pattern (21 bp):
ATTTCTAGCCAACCAAACACT
Found at i:37274423 original size:7 final size:7
Alignment explanation
Indices: 37274411--37274454 Score: 79
Period size: 7 Copynumber: 6.3 Consensus size: 7
37274401 TTTTGATGGC
*
37274411 AAAAATG
1 AAAAATA
37274418 AAAAATA
1 AAAAATA
37274425 AAAAATA
1 AAAAATA
37274432 AAAAATA
1 AAAAATA
37274439 AAAAATA
1 AAAAATA
37274446 AAAAATA
1 AAAAATA
37274453 AA
1 AA
37274455 TCATATTTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 36 1.00
ACGTcount: A:0.84, C:0.00, G:0.02, T:0.14
Consensus pattern (7 bp):
AAAAATA
Found at i:37277288 original size:6 final size:6
Alignment explanation
Indices: 37277277--37277323 Score: 94
Period size: 6 Copynumber: 7.8 Consensus size: 6
37277267 TAGGTGTCTA
37277277 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATG
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATG
37277324 ATTAATTACA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.32, T:0.17
Consensus pattern (6 bp):
AAATGG
Done.