Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 121 of 240
Found at i:37584205 original size:16 final size:17
Alignment explanation
Indices: 37584158--37584206 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 17
37584148 GTACTTTATG
*
37584158 TAATTAATGTAAAATAA
1 TAATTAATCTAAAATAA
37584175 T-ATT-ATCTAAAATAA
1 TAATTAATCTAAAATAA
*
37584190 TAATTAAT-TAACATAA
1 TAATTAATCTAAAATAA
37584206 T
1 T
37584207 TAACTCTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
15 11 0.39
16 14 0.50
17 3 0.11
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (17 bp):
TAATTAATCTAAAATAA
Found at i:37584265 original size:24 final size:26
Alignment explanation
Indices: 37584202--37584281 Score: 73
Period size: 27 Copynumber: 3.2 Consensus size: 26
37584192 ATTAATTAAC
*
37584202 ATAATTAACTCTAATATTAGTTAAGTC
1 ATAATTAACTCTAATATTA-TTAAGTA
37584229 ATAATTAA----AATATT-TT-AGTA
1 ATAATTAACTCTAATATTATTAAGTA
* *
37584249 ATAATTAACTCTAATATTGTTCAAATA
1 ATAATTAACTCTAATATTATT-AAGTA
37584276 ATAATT
1 ATAATT
37584282 TTAGTAACTC
Statistics
Matches: 44, Mismatches: 2, Indels: 14
0.73 0.03 0.23
Matches are distributed among these distances:
20 11 0.25
21 2 0.05
23 6 0.14
24 6 0.14
25 2 0.05
27 17 0.39
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.42
Consensus pattern (26 bp):
ATAATTAACTCTAATATTATTAAGTA
Found at i:37586415 original size:18 final size:18
Alignment explanation
Indices: 37586385--37586433 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
37586375 ATATTCATAC
*
37586385 TCAATAATCATAATCATAT
1 TCAATTATCATAAT-ATAT
*
37586404 TCTATT-TCATAAATATAT
1 TCAATTATCAT-AATATAT
37586422 TCAATTATCATA
1 TCAATTATCATA
37586434 CTTACTCACT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
18 14 0.56
19 11 0.44
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (18 bp):
TCAATTATCATAATATAT
Found at i:37587250 original size:14 final size:15
Alignment explanation
Indices: 37587233--37587275 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 15
37587223 AAATAATTTA
37587233 AAAATTATAAAAT-T
1 AAAATTATAAAATAT
*
37587247 AAAATTAAAAAATAT
1 AAAATTATAAAATAT
37587262 AAAAGTTCATAAAA
1 AAAA-TT-ATAAAA
37587276 ATTCAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 12 0.50
15 5 0.21
16 2 0.08
17 5 0.21
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (15 bp):
AAAATTATAAAATAT
Found at i:37587274 original size:31 final size:30
Alignment explanation
Indices: 37587231--37587289 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
37587221 ACAAATAATT
37587231 TAAAAATTAT-AAAATTAAAATTAAAAAATA
1 TAAAAATTATAAAAATTAAAA-TAAAAAATA
* *
37587261 TAAAAGTTCATAAAAATTCAAATAAAAAA
1 TAAAAATT-ATAAAAATTAAAATAAAAAA
37587290 CTATGGAGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 7 0.28
31 9 0.36
32 9 0.36
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (30 bp):
TAAAAATTATAAAAATTAAAATAAAAAATA
Found at i:37592081 original size:22 final size:23
Alignment explanation
Indices: 37592053--37592100 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
37592043 GCCTAGGTTG
37592053 GAAAGAACAATACG-TGAAACTT
1 GAAAGAACAATACGCTGAAACTT
* *
37592075 GAAAGAACAATATGCTGAAGCTT
1 GAAAGAACAATACGCTGAAACTT
37592098 GAA
1 GAA
37592101 CTCTGATTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 13 0.57
23 10 0.43
ACGTcount: A:0.48, C:0.12, G:0.21, T:0.19
Consensus pattern (23 bp):
GAAAGAACAATACGCTGAAACTT
Found at i:37610265 original size:16 final size:15
Alignment explanation
Indices: 37610232--37610287 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
37610222 TCTTATAGTG
*
37610232 TCACAATCTATAGTTT
1 TCACAATCTATA-ATT
*
37610248 TCACAATTCTATACTT
1 TCACAA-TCTATAATT
37610264 TCA-AAGTCTATAATT
1 TCACAA-TCTATAATT
37610279 TCAC-ATCTA
1 TCACAATCTA
37610288 AACAACACTT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
14 4 0.11
15 14 0.40
16 11 0.31
17 6 0.17
ACGTcount: A:0.34, C:0.21, G:0.04, T:0.41
Consensus pattern (15 bp):
TCACAATCTATAATT
Found at i:37614823 original size:27 final size:26
Alignment explanation
Indices: 37614792--37614969 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
37614782 TAAATTGTAC
37614792 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
37614819 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
37614845 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
37614873 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
37614901 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
37614928 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
37614955 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37614970 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 102 0.80
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:37614908 original size:82 final size:81
Alignment explanation
Indices: 37614793--37614948 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
37614783 AAATTGTACA
* * *
37614793 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37614857 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37614874 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37614939 TGCGAGTTGA
65 TGCGAATTGA
37614949 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.73
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37614960 original size:82 final size:81
Alignment explanation
Indices: 37614789--37614969 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
37614779 GATTAAATTG
* * *
37614789 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37614854 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37614870 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37614934 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37614952 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37614970 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37614980 original size:27 final size:27
Alignment explanation
Indices: 37614874--37614980 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
37614864 TGACCATGCG
* * *
37614874 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
37614902 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
37614929 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
37614956 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
37614981 CATTCGTGAA
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
27 52 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:37618092 original size:17 final size:19
Alignment explanation
Indices: 37618061--37618097 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
37618051 GAAATGTTTC
*
37618061 TTTTACGATTGTGG-ATTT
1 TTTTAAGATTGTGGAATTT
37618079 TTTTAAGATT-TGGAATTT
1 TTTTAAGATTGTGGAATTT
37618097 T
1 T
37618098 ATAGACTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 3 0.18
18 14 0.82
ACGTcount: A:0.22, C:0.03, G:0.19, T:0.57
Consensus pattern (19 bp):
TTTTAAGATTGTGGAATTT
Found at i:37625861 original size:5 final size:5
Alignment explanation
Indices: 37625851--37625875 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
37625841 TAATAAGTTT
37625851 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
37625876 AACATGCAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:37626484 original size:3 final size:3
Alignment explanation
Indices: 37626478--37626529 Score: 63
Period size: 3 Copynumber: 17.3 Consensus size: 3
37626468 ATAGCGGTGG
*
37626478 TAA TAA TAA TAA TAA -AT TAA TAA TAA T-A TAA TAA TAA TAGA TTAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A -TAA
37626523 TAA TAA T
1 TAA TAA T
37626530 GTTAATGAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
2 3 0.07
3 36 0.84
4 2 0.05
5 2 0.05
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:37626500 original size:11 final size:11
Alignment explanation
Indices: 37626484--37626528 Score: 54
Period size: 11 Copynumber: 3.8 Consensus size: 11
37626474 GTGGTAATAA
37626484 TAATAATAAAT
1 TAATAATAAAT
37626495 TAATAATAATAT
1 TAATAATAA-AT
*
37626507 AATAATAATAGAT
1 --TAATAATAAAT
37626520 TAATAATAA
1 TAATAATAA
37626529 TGTTAATGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
11 17 0.59
12 2 0.07
13 2 0.07
14 8 0.28
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (11 bp):
TAATAATAAAT
Found at i:37626500 original size:14 final size:13
Alignment explanation
Indices: 37626478--37626529 Score: 68
Period size: 14 Copynumber: 3.8 Consensus size: 13
37626468 ATAGCGGTGG
37626478 TAATAATAATAAT
1 TAATAATAATAAT
*
37626491 AAATTAATAATAAT
1 TAA-TAATAATAAT
37626505 ATAATAATAATAGAT
1 -TAATAATAATA-AT
37626520 TAATAATAAT
1 TAATAATAAT
37626530 GTTAATGAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
13 2 0.06
14 28 0.82
15 4 0.12
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (13 bp):
TAATAATAATAAT
Found at i:37626512 original size:25 final size:25
Alignment explanation
Indices: 37626480--37626529 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
37626470 AGCGGTGGTA
37626480 ATAATAATAATAAATTAATAATAAT
1 ATAATAATAATAAATTAATAATAAT
*
37626505 ATAATAATAATAGATTAATAATAAT
1 ATAATAATAATAAATTAATAATAAT
37626530 GTTAATGAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (25 bp):
ATAATAATAATAAATTAATAATAAT
Found at i:37629349 original size:50 final size:50
Alignment explanation
Indices: 37629295--37629428 Score: 214
Period size: 50 Copynumber: 2.7 Consensus size: 50
37629285 TAAGTGGCAA
37629295 TATATCTGCATATTAGTGGTGGCTTGTCTACAAAGTGTTATCAGTGCCAG
1 TATATCTGCATATTAGTGGTGGCTTGTCTACAAAGTGTTATCAGTGCCAG
* *
37629345 TATATCTGCATATCAGTGGTGGCTTGTCTACAAAGTGTTATCAGTGGCAG
1 TATATCTGCATATTAGTGGTGGCTTGTCTACAAAGTGTTATCAGTGCCAG
* * * *
37629395 TTTATCTGGAAACTAGTGGTGGCTTGTCTACAAA
1 TATATCTGCATATTAGTGGTGGCTTGTCTACAAA
37629429 TGGTATTTTG
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 77 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.35
Consensus pattern (50 bp):
TATATCTGCATATTAGTGGTGGCTTGTCTACAAAGTGTTATCAGTGCCAG
Found at i:37632432 original size:18 final size:18
Alignment explanation
Indices: 37632390--37632432 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
37632380 GCCCATTCCG
*
37632390 AAGTATATATATACACAT
1 AAGTATGTATATACACAT
*
37632408 ATA-TATGTATATATACAT
1 A-AGTATGTATATACACAT
37632426 AAGTATG
1 AAGTATG
37632433 CCCATTCGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 1 0.05
18 19 0.90
19 1 0.05
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (18 bp):
AAGTATGTATATACACAT
Found at i:37632939 original size:28 final size:28
Alignment explanation
Indices: 37632902--37633053 Score: 252
Period size: 28 Copynumber: 5.5 Consensus size: 28
37632892 TAAATTGTAC
37632902 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
37632930 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
*
37632958 AGCACTAAGTGTGCGAGCTTGACTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
* *
37632986 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
*
37633014 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
*
37633041 AGCACTGAGTGTG
1 AGCACTAAGTGTG
37633054 TGGACATAAT
Statistics
Matches: 119, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
27 22 0.18
28 97 0.82
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGCTTGATTATGT
Found at i:37637122 original size:137 final size:137
Alignment explanation
Indices: 37636851--37637114 Score: 438
Period size: 137 Copynumber: 1.9 Consensus size: 137
37636841 TATGCAATCT
* * * *
37636851 AGTCATTTTTTATATTTTTACAAAATTGCCCCTAAAGTTTTACTTTTATTTAATTTAATCCCTGA
1 AGTCATTTTTCACATTTTTACAAAATTGCCCCTAAACTTTTACTTTTATTCAATTTAATCCCTGA
* *
37636916 GCCCAAACCATGCAAATTAACCATTTTTACCCAAAATTGAGTCTACCCGAATACTCAAGGTACCC
66 GCCCAAAACATGCAAATTAACCATTTTTACCCAAAATTGAGTCTACCCGAATACACAAGGTACCC
37636981 AAAATTG
131 AAAATTG
* *
37636988 AGTCATTTTTCACATTTTTATAAAATTTCCCCTAAACTTTTACTTTTATTCAATTTAATCCCTGA
1 AGTCATTTTTCACATTTTTACAAAATTGCCCCTAAACTTTTACTTTTATTCAATTTAATCCCTGA
* *
37637053 GCCCAAAACATGCAAATTAACCATTTTTACCCAAATTTGAGTCTAGCCGAATACACAAGGTA
66 GCCCAAAACATGCAAATTAACCATTTTTACCCAAAATTGAGTCTACCCGAATACACAAGGTA
37637115 TCTAAAATAG
Statistics
Matches: 117, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
137 117 1.00
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (137 bp):
AGTCATTTTTCACATTTTTACAAAATTGCCCCTAAACTTTTACTTTTATTCAATTTAATCCCTGA
GCCCAAAACATGCAAATTAACCATTTTTACCCAAAATTGAGTCTACCCGAATACACAAGGTACCC
AAAATTG
Found at i:37638466 original size:20 final size:19
Alignment explanation
Indices: 37638440--37638490 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 19
37638430 GTGAAGCAAG
* *
37638440 AATATCGATACCTTAGGAA
1 AATATCGATACATTAAGAA
37638459 ATATATCGATACATTAAGAA
1 A-ATATCGATACATTAAGAA
37638479 AATTATCGATAC
1 AA-TATCGATAC
37638491 TTCATCAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 2 0.07
20 26 0.93
ACGTcount: A:0.45, C:0.14, G:0.12, T:0.29
Consensus pattern (19 bp):
AATATCGATACATTAAGAA
Found at i:37640695 original size:20 final size:20
Alignment explanation
Indices: 37640672--37640711 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
37640662 GTATTGATAA
*
37640672 ATTTCTTAAGGTATCAATAT
1 ATTTCCTAAGGTATCAATAT
*
37640692 ATTTCCTAAGGTATCGATAT
1 ATTTCCTAAGGTATCAATAT
37640712 TCCTACTCGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.42
Consensus pattern (20 bp):
ATTTCCTAAGGTATCAATAT
Found at i:37644018 original size:50 final size:50
Alignment explanation
Indices: 37643902--37644147 Score: 188
Period size: 50 Copynumber: 4.8 Consensus size: 50
37643892 GATAATAACA
* * * * * ** * * *
37643902 TGCCAAAGCCATGTGCCAAACATGGCCTTACATGGGATGTTTCATGT-AC
1 TGCCAATGCCATGTCCCAAACATCGTCTTACGTGGGACCTCTCATATCAG
* * * * ** *
37643951 TGCCAATGCCATATCCCATATATCGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAAACATCGTCTTACGTGGGACCTCTCATATCAG
* * *
37644001 TGCCCATGCCATGTCCCAAACATCGTCTTACGGGGGACCTCTCATCTCAG
1 TGCCAATGCCATGTCCCAAACATCGTCTTACGTGGGACCTCTCATATCAG
* * * * *
37644051 TGCCAACGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCACAACTTCAATAA
1 TGCCAATGCCATGTCCCAAACATCGTCTTACGTGGGACCTCTCA-TA--TC---AG
* *
37644107 TGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTC
1 TGCCAATGCCATGTCCCAAACATCGTCTTACGTGGGACCTC
37644148 ATTCCCTTAA
Statistics
Matches: 158, Mismatches: 32, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
49 36 0.23
50 79 0.50
53 2 0.01
56 41 0.26
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAAACATCGTCTTACGTGGGACCTCTCATATCAG
Found at i:37654940 original size:21 final size:22
Alignment explanation
Indices: 37654900--37654943 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
37654890 ATTATATGTA
*
37654900 TTAATTTATAATATAATTAATT
1 TTAATTTATAATACAATTAATT
*
37654922 TTAATTTAT-ATCCAATTAATT
1 TTAATTTATAATACAATTAATT
37654943 T
1 T
37654944 GGGTTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.55
Consensus pattern (22 bp):
TTAATTTATAATACAATTAATT
Found at i:37657484 original size:31 final size:31
Alignment explanation
Indices: 37657449--37657507 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
37657439 AAAAATATAC
*
37657449 TTGTATGTGATTACATTAAGTATTTAAAGAG
1 TTGTATATGATTACATTAAGTATTTAAAGAG
37657480 TTGTATATGATTACATTAAGTATTTAAA
1 TTGTATATGATTACATTAAGTATTTAAA
37657508 ATGGATGATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.37, C:0.03, G:0.15, T:0.44
Consensus pattern (31 bp):
TTGTATATGATTACATTAAGTATTTAAAGAG
Found at i:37658665 original size:27 final size:27
Alignment explanation
Indices: 37658631--37658718 Score: 99
Period size: 27 Copynumber: 3.3 Consensus size: 27
37658621 TCAGAAGGTT
* * *
37658631 GTAAAATTACTGGAATACCTTTAAAGG
1 GTAAAATTACTGAAATACCCTCAAAGG
* *
37658658 GTAAAATTA-TCAAAATACCCTCGAAGG
1 GTAAAATTACT-GAAATACCCTCAAAGG
37658685 GTAAAATTACTGAAATACCCTCGAAA-G
1 GTAAAATTACTGAAATACCCTC-AAAGG
37658712 GTAAAAT
1 GTAAAAT
37658719 AACCGTAATG
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
26 1 0.02
27 47 0.92
28 3 0.06
ACGTcount: A:0.44, C:0.15, G:0.16, T:0.25
Consensus pattern (27 bp):
GTAAAATTACTGAAATACCCTCAAAGG
Found at i:37658826 original size:24 final size:24
Alignment explanation
Indices: 37658766--37658923 Score: 158
Period size: 24 Copynumber: 6.6 Consensus size: 24
37658756 CCCCTCGGGG
* * *
37658766 TTAAATGATTGATTTGCCTGTGAT
1 TTAAATGACTGATTTGTCTGAGAT
* * * * *
37658790 GTAACTAAATGATTTGTTTGAGAT
1 TTAAATGACTGATTTGTCTGAGAT
*
37658814 GTAAATGACTGATTTGTCT-ATGAT
1 TTAAATGACTGATTTGTCTGA-GAT
*
37658838 TTAAATGATTGATTTGTCT-ATGAT
1 TTAAATGACTGATTTGTCTGA-GAT
*
37658862 TTAAATGACTGATTTGTCTGTGAT
1 TTAAATGACTGATTTGTCTGAGAT
*
37658886 TTAAATGACTGATTTGTCTGTGAT
1 TTAAATGACTGATTTGTCTGAGAT
**
37658910 TTGTATGACTGATT
1 TTAAATGACTGATT
37658924 CCGTGCATGA
Statistics
Matches: 115, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
23 1 0.01
24 114 0.99
ACGTcount: A:0.27, C:0.07, G:0.20, T:0.46
Consensus pattern (24 bp):
TTAAATGACTGATTTGTCTGAGAT
Found at i:37658875 original size:72 final size:72
Alignment explanation
Indices: 37658766--37658911 Score: 202
Period size: 72 Copynumber: 2.0 Consensus size: 72
37658756 CCCCTCGGGG
* * *
37658766 TTAAATGATTGATTTGCCTGTGATGTAACTAAATGATTTGTTTGAGATGTAAATGACTGATTTGT
1 TTAAATGATTGATTTGCCTATGATGTAAATAAATGATTTGTCTGAGATGTAAATGACTGATTTGT
37658831 CTATGAT
66 CTATGAT
* * * * * *
37658838 TTAAATGATTGATTTGTCTATGATTTAAATGACTGATTTGTCTGTGATTTAAATGACTGATTTGT
1 TTAAATGATTGATTTGCCTATGATGTAAATAAATGATTTGTCTGAGATGTAAATGACTGATTTGT
*
37658903 CTGTGAT
66 CTATGAT
37658910 TT
1 TT
37658912 GTATGACTGA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
72 64 1.00
ACGTcount: A:0.27, C:0.07, G:0.20, T:0.46
Consensus pattern (72 bp):
TTAAATGATTGATTTGCCTATGATGTAAATAAATGATTTGTCTGAGATGTAAATGACTGATTTGT
CTATGAT
Found at i:37659043 original size:26 final size:25
Alignment explanation
Indices: 37659007--37659065 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
37658997 TTGGTCACAT
*
37659007 ATACTATTACTGGCAGCTTTGCTGCG
1 ATACTATTACTGGCAGC-TTCCTGCG
*
37659033 ATACTGTTACTGGCAGCTTCCTGCG
1 ATACTATTACTGGCAGCTTCCTGCG
*
37659058 ATGCTATT
1 ATACTATT
37659066 GATTGCTTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 13 0.45
26 16 0.55
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (25 bp):
ATACTATTACTGGCAGCTTCCTGCG
Found at i:37659154 original size:64 final size:64
Alignment explanation
Indices: 37659074--37659248 Score: 210
Period size: 64 Copynumber: 2.7 Consensus size: 64
37659064 TTGATTGCTT
* * * *
37659074 TGTGCCGATCATATTACCATTACTGATGG-TTGTGTGCCGATCATATTAC-AGTTACTGATGGTT
1 TGTGACGATCATATTACCACTACTGATGGCTT-TGTGCCGATCATACTACTA-TTACAGATGGTT
37659137 G
64 G
* *
37659138 TGTGACGATCGTATTACTACTACTGATGGCTTTGTGCCGATCATACTACTATTACAGATGGTTG
1 TGTGACGATCATATTACCACTACTGATGGCTTTGTGCCGATCATACTACTATTACAGATGGTTG
* * * * * *
37659202 TGTGTCAATCATATTACTACTATTGATGGCTTTATGCCAATCATACT
1 TGTGACGATCATATTACCACTACTGATGGCTTTGTGCCGATCATACT
37659249 GATTAGTACC
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
64 94 0.97
65 3 0.03
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (64 bp):
TGTGACGATCATATTACCACTACTGATGGCTTTGTGCCGATCATACTACTATTACAGATGGTTG
Found at i:37659220 original size:32 final size:32
Alignment explanation
Indices: 37659074--37659230 Score: 192
Period size: 32 Copynumber: 4.9 Consensus size: 32
37659064 TTGATTGCTT
*
37659074 TGTGCCGATCATATTACCATTACTGATGGTTG
1 TGTGCCGATCATATTACTATTACTGATGGTTG
37659106 TGTGCCGATCATATTAC-AGTTACTGATGGTTG
1 TGTGCCGATCATATTACTA-TTACTGATGGTTG
* * *
37659138 TGTGACGATCGTATTACTACTACTGATGGCTT-
1 TGTGCCGATCATATTACTATTACTGATGG-TTG
* *
37659170 TGTGCCGATCATACTACTATTACAGATGGTTG
1 TGTGCCGATCATATTACTATTACTGATGGTTG
* * * *
37659202 TGTGTCAATCATATTACTACTATTGATGG
1 TGTGCCGATCATATTACTATTACTGATGG
37659231 CTTTATGCCA
Statistics
Matches: 107, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
31 3 0.03
32 101 0.94
33 3 0.03
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.38
Consensus pattern (32 bp):
TGTGCCGATCATATTACTATTACTGATGGTTG
Found at i:37659860 original size:112 final size:112
Alignment explanation
Indices: 37659663--37659887 Score: 450
Period size: 112 Copynumber: 2.0 Consensus size: 112
37659653 CTGCATCAGC
37659663 TTTCGCTTTTAGCTTTTGATTTATAAGAAACTAAATTTGGGTATTTTTATGTAAAAATGCCTCTT
1 TTTCGCTTTTAGCTTTTGATTTATAAGAAACTAAATTTGGGTATTTTTATGTAAAAATGCCTCTT
37659728 TAAAGTTATAAACTTTAAATTGGGGTTTTTACTTATTTAGTTTGATA
66 TAAAGTTATAAACTTTAAATTGGGGTTTTTACTTATTTAGTTTGATA
37659775 TTTCGCTTTTAGCTTTTGATTTATAAGAAACTAAATTTGGGTATTTTTATGTAAAAATGCCTCTT
1 TTTCGCTTTTAGCTTTTGATTTATAAGAAACTAAATTTGGGTATTTTTATGTAAAAATGCCTCTT
37659840 TAAAGTTATAAACTTTAAATTGGGGTTTTTACTTATTTAGTTTGATA
66 TAAAGTTATAAACTTTAAATTGGGGTTTTTACTTATTTAGTTTGATA
37659887 T
1 T
37659888 AAACTGATAG
Statistics
Matches: 113, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
112 113 1.00
ACGTcount: A:0.29, C:0.08, G:0.14, T:0.48
Consensus pattern (112 bp):
TTTCGCTTTTAGCTTTTGATTTATAAGAAACTAAATTTGGGTATTTTTATGTAAAAATGCCTCTT
TAAAGTTATAAACTTTAAATTGGGGTTTTTACTTATTTAGTTTGATA
Found at i:37661854 original size:79 final size:81
Alignment explanation
Indices: 37661752--37661936 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
37661742 GCTCCTCGTT
* *
37661752 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
37661815 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
37661832 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
37661896 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
37661912 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37661937 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:37661936 original size:40 final size:40
Alignment explanation
Indices: 37661752--37661936 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
37661742 GCTCCTCGTT
* *
37661752 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
37661792 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
37661832 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
37661871 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
37661912 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37661937 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:37665194 original size:27 final size:27
Alignment explanation
Indices: 37665133--37665184 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
37665123 AAATTGCTAG
* * *
37665133 AATACCCTCGAAGGGTAAAATTACCAA
1 AATACCCTCAAAAGGTAAAATGACCAA
37665160 AATACCCTCAAAAGGTAAAATGACC
1 AATACCCTCAAAAGGTAAAATGACC
37665185 GTAATGCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.46, C:0.23, G:0.13, T:0.17
Consensus pattern (27 bp):
AATACCCTCAAAAGGTAAAATGACCAA
Found at i:37665259 original size:24 final size:24
Alignment explanation
Indices: 37665228--37665386 Score: 196
Period size: 24 Copynumber: 6.6 Consensus size: 24
37665218 CCCCTCGAGG
* *
37665228 TTAAATGATTGATTTGCCTGTGAT
1 TTAAATGACTGATTTGTCTGTGAT
* * *
37665252 GTAAATGAATGATTTGTC--TAACT
1 TTAAATGACTGATTTGTCTGTGA-T
*
37665275 TGTAAATGACTAATTTGTCTGTGAT
1 T-TAAATGACTGATTTGTCTGTGAT
*
37665300 TTAAATGACTGATTTGTCTATGAT
1 TTAAATGACTGATTTGTCTGTGAT
*
37665324 TTATATGACTGATTTGTCTGTGAT
1 TTAAATGACTGATTTGTCTGTGAT
37665348 TTAAATGACTGATTTGTCTGTGAT
1 TTAAATGACTGATTTGTCTGTGAT
**
37665372 TTGTATGACTGATTT
1 TTAAATGACTGATTT
37665387 CGTGCATGGC
Statistics
Matches: 116, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
22 2 0.02
23 1 0.01
24 109 0.94
25 2 0.02
26 2 0.02
ACGTcount: A:0.26, C:0.08, G:0.19, T:0.46
Consensus pattern (24 bp):
TTAAATGACTGATTTGTCTGTGAT
Found at i:37665314 original size:13 final size:13
Alignment explanation
Indices: 37665296--37665386 Score: 59
Period size: 13 Copynumber: 7.5 Consensus size: 13
37665286 AATTTGTCTG
*
37665296 TGATTTAAATGAC
1 TGATTTATATGAC
* *
37665309 TGATTTGTCT-A-
1 TGATTTATATGAC
37665320 TGATTTATATGAC
1 TGATTTATATGAC
* *
37665333 TGATTTGTCTG--
1 TGATTTATATGAC
*
37665344 TGATTTAAATGAC
1 TGATTTATATGAC
* *
37665357 TGATTTGTCTG--
1 TGATTTATATGAC
*
37665368 TGATTTGTATGAC
1 TGATTTATATGAC
37665381 TGATTT
1 TGATTT
37665387 CGTGCATGGC
Statistics
Matches: 58, Mismatches: 14, Indels: 12
0.69 0.17 0.14
Matches are distributed among these distances:
11 26 0.45
12 2 0.03
13 30 0.52
ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48
Consensus pattern (13 bp):
TGATTTATATGAC
Found at i:37665537 original size:26 final size:26
Alignment explanation
Indices: 37665499--37665564 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
37665489 CTGGCCACAT
* * *
37665499 ATACTGTTACTGGCAGCTTTACTGCG
1 ATACTATTGCTGGCAACTTTACTGCG
*
37665525 ATACTATTGCTGGCAACTTTCCTGCG
1 ATACTATTGCTGGCAACTTTACTGCG
* *
37665551 ATGCTATTGATGGC
1 ATACTATTGCTGGC
37665565 TTTGTGCCGA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.35
Consensus pattern (26 bp):
ATACTATTGCTGGCAACTTTACTGCG
Found at i:37665724 original size:96 final size:95
Alignment explanation
Indices: 37665560--37665757 Score: 272
Period size: 96 Copynumber: 2.1 Consensus size: 95
37665550 GATGCTATTG
* * * *
37665560 ATGGCTTTGTGCCGATCATATTACCATTAGAGATGGCTGTATGTCGATCATATTACCATTACTGA
1 ATGGCTTTGTGCCGATCATACTACCATTAGAGATGGCTATATGCCGATCATATTACCACTACTGA
37665625 TGGCTGTGTGCCAATCATATTACTACTACTA
66 TGGCTGTGTGCCAATCATATTACT-CTACTA
* * * *
37665656 ATGGCTTTGTGCCGATCATACTACTATT-GCTGATGGCTATGTGCCGATCATATTACTACTACTG
1 ATGGCTTTGTGCCGATCATACTACCATTAG-AGATGGCTATATGCCGATCATATTACCACTACTG
* * *
37665720 ATGGCTTTGTGCCAATCATATTACTGTACTT
65 ATGGCTGTGTGCCAATCATATTACTCTACTA
37665751 ATGGCTT
1 ATGGCTT
37665758 GTAGCCATTT
Statistics
Matches: 90, Mismatches: 11, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
95 12 0.13
96 78 0.87
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (95 bp):
ATGGCTTTGTGCCGATCATACTACCATTAGAGATGGCTATATGCCGATCATATTACCACTACTGA
TGGCTGTGTGCCAATCATATTACTCTACTA
Found at i:37665744 original size:32 final size:32
Alignment explanation
Indices: 37665558--37665757 Score: 231
Period size: 32 Copynumber: 6.3 Consensus size: 32
37665548 GCGATGCTAT
* *
37665558 TGATGGCTTTGTGCCGATCATATTACCATTAG
1 TGATGGCTTTGTGCCGATCATATTACTATTAC
* * * * *
37665590 AGATGGCTGTATGTCGATCATATTACCATTAC
1 TGATGGCTTTGTGCCGATCATATTACTATTAC
* * *
37665622 TGATGGCTGTGTGCCAATCATATTACTACTAC
1 TGATGGCTTTGTGCCGATCATATTACTATTAC
* * *
37665654 TAATGGCTTTGTGCCGATCATACTACTATTGC
1 TGATGGCTTTGTGCCGATCATATTACTATTAC
* *
37665686 TGATGGCTATGTGCCGATCATATTACTACTAC
1 TGATGGCTTTGTGCCGATCATATTACTATTAC
* *
37665718 TGATGGCTTTGTGCCAATCATATTACT-GTAC
1 TGATGGCTTTGTGCCGATCATATTACTATTAC
*
37665749 TTATGGCTT
1 TGATGGCTT
37665758 GTAGCCATTT
Statistics
Matches: 142, Mismatches: 26, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
31 11 0.08
32 131 0.92
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (32 bp):
TGATGGCTTTGTGCCGATCATATTACTATTAC
Found at i:37667246 original size:33 final size:33
Alignment explanation
Indices: 37667204--37667268 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
37667194 CTTGAGCAAG
37667204 TTAACGGTTTGGAAACTTTTTACAAAATTATGA
1 TTAACGGTTTGGAAACTTTTTACAAAATTATGA
37667237 TTAACGGTTTGGAAACTTTTTACAAAATTATG
1 TTAACGGTTTGGAAACTTTTTACAAAATTATG
37667269 TTTGCTTTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.40
Consensus pattern (33 bp):
TTAACGGTTTGGAAACTTTTTACAAAATTATGA
Found at i:37668496 original size:27 final size:27
Alignment explanation
Indices: 37668453--37668540 Score: 95
Period size: 27 Copynumber: 3.3 Consensus size: 27
37668443 CGAAAAGATT
* *
37668453 GTAAAATTACTAGAATACCCTCGAAGG
1 GTAAAATTATTAAAATACCCTCGAAGG
*
37668480 GTAAAATTATTAAAATACCCTCAAAGG
1 GTAAAATTATTAAAATACCCTCGAAGG
* ** * * *
37668507 GTAAAATGATTGTAATGCCCTTGTAGG
1 GTAAAATTATTAAAATACCCTCGAAGG
37668534 GTAAAAT
1 GTAAAAT
37668541 GATCGTAATG
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (27 bp):
GTAAAATTATTAAAATACCCTCGAAGG
Found at i:37668541 original size:27 final size:27
Alignment explanation
Indices: 37668504--37668569 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 27
37668494 ATACCCTCAA
* *
37668504 AGGGTAAAATGATTGTAATGCCCTTGT
1 AGGGTAAAATGATCGTAATGCCCCTGT
37668531 AGGGTAAAATGATCGTAATGCCCCTGT
1 AGGGTAAAATGATCGTAATGCCCCTGT
37668558 AGGGTAAAATGA
1 AGGGTAAAATGA
37668570 CTATTTTACC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.27
Consensus pattern (27 bp):
AGGGTAAAATGATCGTAATGCCCCTGT
Found at i:37668619 original size:24 final size:24
Alignment explanation
Indices: 37668589--37668707 Score: 89
Period size: 24 Copynumber: 5.0 Consensus size: 24
37668579 CTTTCGGGAT
37668589 TAAATGATTAATTT-TCCTATGATG
1 TAAATGATTAATTTGT-CTATGATG
* * * *
37668613 TAAATGAATGACTTGTCCGA-GATG
1 TAAATGATTAATTTGT-CTATGATG
* * * *
37668637 TAAATGACTGATTTGTCTGTGATT
1 TAAATGATTAATTTGTCTATGATG
* * *
37668661 TAAATGACTAATTTGTCTGTGATT
1 TAAATGATTAATTTGTCTATGATG
* *
37668685 TAAATGATTGATTTGTCTCTGAT
1 TAAATGATTAATTTGTCTATGAT
37668708 TTGTATGACC
Statistics
Matches: 80, Mismatches: 13, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
23 1 0.01
24 75 0.94
25 4 0.05
ACGTcount: A:0.29, C:0.09, G:0.18, T:0.43
Consensus pattern (24 bp):
TAAATGATTAATTTGTCTATGATG
Found at i:37668721 original size:24 final size:24
Alignment explanation
Indices: 37668608--37668709 Score: 123
Period size: 24 Copynumber: 4.2 Consensus size: 24
37668598 AATTTTCCTA
* * * *
37668608 TGATGTAAATGAATGACTTGTCCG
1 TGATTTAAATGACTGATTTGTCTG
* *
37668632 AGATGTAAATGACTGATTTGTCTG
1 TGATTTAAATGACTGATTTGTCTG
*
37668656 TGATTTAAATGACTAATTTGTCTG
1 TGATTTAAATGACTGATTTGTCTG
* *
37668680 TGATTTAAATGATTGATTTGTCTC
1 TGATTTAAATGACTGATTTGTCTG
37668704 TGATTT
1 TGATTT
37668710 GTATGACCGA
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 68 1.00
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.43
Consensus pattern (24 bp):
TGATTTAAATGACTGATTTGTCTG
Found at i:37668833 original size:27 final size:27
Alignment explanation
Indices: 37668803--37668855 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
37668793 TAGTGGCTCT
*
37668803 GCCACA-ATCACTGTTACTGGTCGCTTG
1 GCCACATAT-ACTGTTACTGGTAGCTTG
37668830 GCCACATATACTGTTACTGGTAGCTT
1 GCCACATATACTGTTACTGGTAGCTT
37668856 TGTTGTCATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 22 0.92
28 2 0.08
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (27 bp):
GCCACATATACTGTTACTGGTAGCTTG
Found at i:37668946 original size:32 final size:32
Alignment explanation
Indices: 37668896--37669082 Score: 203
Period size: 32 Copynumber: 5.8 Consensus size: 32
37668886 GCGATGCTAT
* *
37668896 TGATGGCTTTGTGCCGATCATATTACCATTAC
1 TGATGGCTGTGTGCCGATCATATTACTATTAC
** *
37668928 TGATAACTGTGTGCCGATCATATTACCATTAC
1 TGATGGCTGTGTGCCGATCATATTACTATTAC
* * * *
37668960 TGATGGTTGTGTGCTGATCATATTACTACTAT
1 TGATGGCTGTGTGCCGATCATATTACTATTAC
* * * *
37668992 TGATGGCTTTGTACCGATCATACTACTATTAT
1 TGATGGCTGTGTGCCGATCATATTACTATTAC
* * * *
37669024 TGATGGTTGTGTGCCGATCATAATACTAGTAA
1 TGATGGCTGTGTGCCGATCATATTACTATTAC
* *
37669056 TGATGGCTTTGTGCCAATCATATTACT
1 TGATGGCTGTGTGCCGATCATATTACT
37669083 GTACTTATGG
Statistics
Matches: 129, Mismatches: 26, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 129 1.00
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.39
Consensus pattern (32 bp):
TGATGGCTGTGTGCCGATCATATTACTATTAC
Found at i:37669060 original size:96 final size:96
Alignment explanation
Indices: 37668892--37669082 Score: 249
Period size: 96 Copynumber: 2.0 Consensus size: 96
37668882 TGCTGCGATG
* * * *
37668892 CTATTGATGGCTTTGTGCCGATCATATTACCATTACTGATAACTGTGTGCCGATCATATTACCAT
1 CTATTGATGGCTTTGTACCGATCATACTACCATTACTGATAACTGTGTGCCGATCATAATACCAG
* **
37668957 TACTGATGG-TTGTGTGCTGATCATATTACTA
66 TAATGATGGCTT-TGTGCCAATCATATTACTA
* * *** *
37668988 CTATTGATGGCTTTGTACCGATCATACTACTATTATTGATGGTTGTGTGCCGATCATAATACTAG
1 CTATTGATGGCTTTGTACCGATCATACTACCATTACTGATAACTGTGTGCCGATCATAATACCAG
37669053 TAATGATGGCTTTGTGCCAATCATATTACT
66 TAATGATGGCTTTGTGCCAATCATATTACT
37669083 GTACTTATGG
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
96 79 0.98
97 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.39
Consensus pattern (96 bp):
CTATTGATGGCTTTGTACCGATCATACTACCATTACTGATAACTGTGTGCCGATCATAATACCAG
TAATGATGGCTTTGTGCCAATCATATTACTA
Found at i:37669112 original size:22 final size:21
Alignment explanation
Indices: 37669087--37669160 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 21
37669077 ATTACTGTAC
37669087 TTATGGCTTGTAGCCATTCTGT
1 TTATGGCTT-TAGCCATTCTGT
* * *
37669109 TTATTGCTTATAGCTATCCTGT
1 TTATGGCTT-TAGCCATTCTGT
* *
37669131 TTACGGCTCTTAGCCATTCTGG
1 TTATGGCT-TTAGCCATTCTGT
37669153 TTACTGGC
1 TTA-TGGC
37669161 AACTTTTCTA
Statistics
Matches: 40, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
22 36 0.90
23 4 0.10
ACGTcount: A:0.15, C:0.22, G:0.20, T:0.43
Consensus pattern (21 bp):
TTATGGCTTTAGCCATTCTGT
Found at i:37670807 original size:10 final size:10
Alignment explanation
Indices: 37670792--37670816 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
37670782 TCTGAACATG
37670792 AATTCATGTA
1 AATTCATGTA
37670802 AATTCATGTA
1 AATTCATGTA
37670812 AATTC
1 AATTC
37670817 TAAGTAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (10 bp):
AATTCATGTA
Found at i:37678715 original size:9 final size:9
Alignment explanation
Indices: 37678690--37678742 Score: 81
Period size: 9 Copynumber: 6.0 Consensus size: 9
37678680 TAATTTTGTA
37678690 AAAATGAA-
1 AAAATGAAT
*
37678698 AAAAAGAAT
1 AAAATGAAT
*
37678707 AAATTGAAT
1 AAAATGAAT
37678716 AAAATGAAT
1 AAAATGAAT
37678725 AAAATGAAT
1 AAAATGAAT
37678734 AAAATGAAT
1 AAAATGAAT
37678743 TGGTTTTACT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
8 7 0.17
9 33 0.82
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (9 bp):
AAAATGAAT
Found at i:37679058 original size:40 final size:40
Alignment explanation
Indices: 37678964--37679175 Score: 275
Period size: 40 Copynumber: 5.3 Consensus size: 40
37678954 AATTACTTAA
* * *
37678964 TGATTGCACTTATGTGCCCCTGTTTATACTTTGGTA-CAC
1 TGATTGCACTTATGTGCCCCTGTTTGTACTTCGGTACCCC
* *
37679003 TGATTGCACTTATGTGCCCCTGTTTGTACTTCGATACCCG
1 TGATTGCACTTATGTGCCCCTGTTTGTACTTCGGTACCCC
** *
37679043 TGATTGCACTTATGTGCCTTTGTTTGTACTTTGGTACCCC
1 TGATTGCACTTATGTGCCCCTGTTTGTACTTCGGTACCCC
* * *
37679083 TGATTGCACTTACGTGCCTCGGTTTGTACTTCGGTACCCC
1 TGATTGCACTTATGTGCCCCTGTTTGTACTTCGGTACCCC
* *
37679123 TAATTACACTTATGTGCCCCTGTTTGTACATT-GGTACCCC
1 TGATTGCACTTATGTGCCCCTGTTTGTAC-TTCGGTACCCC
*
37679163 TGATTTCACTTAT
1 TGATTGCACTTAT
37679176 ATAAACTATA
Statistics
Matches: 150, Mismatches: 21, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 33 0.22
40 115 0.77
41 2 0.01
ACGTcount: A:0.16, C:0.25, G:0.18, T:0.40
Consensus pattern (40 bp):
TGATTGCACTTATGTGCCCCTGTTTGTACTTCGGTACCCC
Found at i:37685924 original size:34 final size:34
Alignment explanation
Indices: 37685881--37685946 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
37685871 TTAAACAAGT
**
37685881 TGAAGCATCAGTTGGAAGAGTTGTTGGACTGGAG
1 TGAAGCATCAGTTACAAGAGTTGTTGGACTGGAG
37685915 TGAAGCATCAGTTACAAGAGTTGTTGGACTGG
1 TGAAGCATCAGTTACAAGAGTTGTTGGACTGG
37685947 GGTTTCATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.27, C:0.11, G:0.35, T:0.27
Consensus pattern (34 bp):
TGAAGCATCAGTTACAAGAGTTGTTGGACTGGAG
Found at i:37692196 original size:27 final size:28
Alignment explanation
Indices: 37692112--37692209 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
37692102 CATGAGATTG
* * * *
37692112 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
37692141 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
37692169 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
37692196 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
37692210 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:37692220 original size:27 final size:27
Alignment explanation
Indices: 37692140--37692222 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
37692130 TAAATTGTAC
* *
37692140 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
37692168 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
37692195 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
37692222 A
1 A
37692223 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:37692223 original size:29 final size:27
Alignment explanation
Indices: 37692112--37692223 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
37692102 CATGAGATTG
** * *
37692112 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
37692141 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
37692169 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
37692196 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
37692224 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:37707476 original size:29 final size:29
Alignment explanation
Indices: 37707441--37707514 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
37707431 GTTGTGAGAT
* *
37707441 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
37707470 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
37707499 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
37707515 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:37707883 original size:40 final size:40
Alignment explanation
Indices: 37707826--37707982 Score: 140
Period size: 40 Copynumber: 3.9 Consensus size: 40
37707816 TCGAATGATG
* *
37707826 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-CATA
* *
37707866 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGACATA
** * **
37707906 TCCGTG-CTAAACCCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCG-GACTAAGTCCCGAAGAGCATTCGTGCTAGTGACATA
* * * * *
37707946 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGAC
37707983 GTGTATTCGG
Statistics
Matches: 97, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
39 1 0.01
40 81 0.84
41 8 0.08
42 7 0.07
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGACATA
Found at i:37711384 original size:47 final size:47
Alignment explanation
Indices: 37711330--37711742 Score: 628
Period size: 47 Copynumber: 8.6 Consensus size: 47
37711320 TATTTGAATA
37711330 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
37711377 AATGTGAAAGTGTATATATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG------TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
37711430 AATGTGAGAGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
37711477 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
37711524 AATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
37711571 AATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
37711622 AATGTGAGAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
37711669 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
37711716 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
37711743 TCCCGAAGGG
Statistics
Matches: 338, Mismatches: 18, Indels: 20
0.90 0.05 0.05
Matches are distributed among these distances:
47 246 0.73
51 46 0.14
53 46 0.14
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:37711637 original size:145 final size:145
Alignment explanation
Indices: 37711330--37711731 Score: 623
Period size: 145 Copynumber: 2.8 Consensus size: 145
37711320 TATTTGAATA
37711330 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG------
*
37711395 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTG----TATATATGTGATAA
60 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAA
37711456 AGCCTAATGGCCGATGTGATG
125 AGCCTAATGGCCGATGTGATG
*
37711477 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
37711542 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTA
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAAGCCTA
37711607 ATGGCCGATGTGATG
131 ATGGCCGATGTGATG
*
37711622 AATGTGAGAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * *
37711687 TGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
37711732 AATGTGATAA
Statistics
Matches: 239, Mismatches: 12, Indels: 10
0.92 0.05 0.04
Matches are distributed among these distances:
141 46 0.19
145 135 0.56
147 58 0.24
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (145 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAAGCCTA
ATGGCCGATGTGATG
Found at i:37711659 original size:192 final size:193
Alignment explanation
Indices: 37711330--37711742 Score: 720
Period size: 192 Copynumber: 2.1 Consensus size: 193
37711320 TATTTGAATA
37711330 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATA
37711395 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGATAAAGCC
65 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGATAAAGCC
* * * *
37711460 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
130 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATG
*
37711524 AATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATAT
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATAT
*
37711588 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGATAAGGCCT
66 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGATAAAGCCT
* *
37711653 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
131 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATG
* *
37711716 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
37711743 TCCCGAAGGG
Statistics
Matches: 208, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
192 150 0.72
194 58 0.28
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (193 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATAT
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGATAAAGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATG
Found at i:37711917 original size:37 final size:37
Alignment explanation
Indices: 37711861--37711939 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
37711851 CCGAGCTCTA
* *
37711861 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
37711898 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
37711935 AAGAC
1 AAGAC
37711940 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:37714701 original size:50 final size:50
Alignment explanation
Indices: 37714538--37714729 Score: 289
Period size: 50 Copynumber: 3.8 Consensus size: 50
37714528 GATAATAACA
* ** *
37714538 TGCCAAAT-CCATGTCCCAGCCATGGTCTTACATGGGATGTACTCATGTCGG
1 TGCC-AATGCCATGTCCCAGACATGGTCTTACATGGGACCT-CTCATCTCGG
* *
37714589 TGCCCATGCCATGTCCCAGACATGGTCTTAC-GGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
37714638 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
37714688 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
37714730 TTACCCCAAT
Statistics
Matches: 129, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
49 39 0.30
50 64 0.50
51 26 0.20
ACGTcount: A:0.20, C:0.31, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:37714713 original size:99 final size:101
Alignment explanation
Indices: 37714538--37714729 Score: 302
Period size: 99 Copynumber: 1.9 Consensus size: 101
37714528 GATAATAACA
* * *
37714538 TGCCAAATCCATGTCCCAGCCATGGTCTTACATGGGATGTACTCATGTCGGTGCCCATGCCATGT
1 TGCCAAATCCATGTCCCAGACATGGTCTTACATGGGATGTACTCATCTCGGTGCCAATGCCATGT
37714603 CCCAGACATGGTCTTAC-GGGGACCTCTCATCTCGG
66 CCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
37714638 TGCC-AATGCCATGTCCCAGACATGGTCTTACATGGGA-GCT-CTCATCTCGGTGCCAATGCCAT
1 TGCCAAAT-CCATGTCCCAGACATGGTCTTACATGGGATG-TACTCATCTCGGTGCCAATGCCAT
*
37714700 GTCCCAGACATGGTCTTACATGGGACCTCT
64 GTCCCAGACATGGTCTTACAGGGGACCTCT
37714730 TTACCCCAAT
Statistics
Matches: 85, Mismatches: 4, Indels: 6
0.89 0.04 0.06
Matches are distributed among these distances:
99 43 0.51
100 42 0.49
ACGTcount: A:0.20, C:0.31, G:0.23, T:0.26
Consensus pattern (101 bp):
TGCCAAATCCATGTCCCAGACATGGTCTTACATGGGATGTACTCATCTCGGTGCCAATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:37714845 original size:13 final size:13
Alignment explanation
Indices: 37714824--37714853 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
37714814 GCTTGGATCA
37714824 TCATCAAATAAAT
1 TCATCAAATAAAT
*
37714837 TCATGAAATAAAT
1 TCATCAAATAAAT
37714850 TCAT
1 TCAT
37714854 TGTTGCTGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.13, G:0.03, T:0.33
Consensus pattern (13 bp):
TCATCAAATAAAT
Found at i:37725966 original size:33 final size:34
Alignment explanation
Indices: 37725915--37725989 Score: 116
Period size: 33 Copynumber: 2.2 Consensus size: 34
37725905 AGATTTGAAC
*
37725915 AAATTAATTACTAACACTTATTTAAGTTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
37725949 AAATTAATT-CTAACACTTATTTGAGCTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
37725982 AATTTAAT
1 AAATTAAT
37725990 AAACTAACTC
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
33 29 0.76
34 9 0.24
ACGTcount: A:0.43, C:0.12, G:0.07, T:0.39
Consensus pattern (34 bp):
AAATTAATTACTAACACTTATTTAAGCTGAACTA
Found at i:37727698 original size:20 final size:19
Alignment explanation
Indices: 37727668--37727717 Score: 66
Period size: 18 Copynumber: 2.6 Consensus size: 19
37727658 TCACTCTCAA
37727668 TCTCTTTTTTCTCTTTTTCAT
1 TCTC-TTTTTCT-TTTTTCAT
*
37727689 TCTCTTTTTCTTTTTTGAT
1 TCTCTTTTTCTTTTTTCAT
37727708 T-TCTTTTTCT
1 TCTCTTTTTCT
37727718 GTCTTCCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 9 0.32
19 8 0.29
20 7 0.25
21 4 0.14
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.74
Consensus pattern (19 bp):
TCTCTTTTTCTTTTTTCAT
Found at i:37727702 original size:18 final size:17
Alignment explanation
Indices: 37727674--37727717 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 17
37727664 TCAATCTCTT
37727674 TTTTCTCTTTTTCATTCTC
1 TTTT-TCTTTTTCATT-TC
*
37727693 TTTTTCTTTTTTGATTTC
1 TTTTTC-TTTTTCATTTC
37727711 TTTTTCT
1 TTTTTCT
37727718 GTCTTCCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 1 0.04
18 10 0.43
19 12 0.52
ACGTcount: A:0.05, C:0.18, G:0.02, T:0.75
Consensus pattern (17 bp):
TTTTTCTTTTTCATTTC
Found at i:37734398 original size:25 final size:25
Alignment explanation
Indices: 37734330--37734405 Score: 68
Period size: 25 Copynumber: 3.1 Consensus size: 25
37734320 CCCTCTATAA
* *
37734330 TATAGTTTATATCA-TTTTCATAATC
1 TATAGTTTCTAT-AGTTTTCACAATC
* *
37734355 TATTGTCTCCTATAG-TTTCACAATC
1 TATAGT-TTCTATAGTTTTCACAATC
*
37734380 TATAGTTTCTATTGTTTTCAC-ATC
1 TATAGTTTCTATAGTTTTCACAATC
37734404 TA
1 TA
37734406 AAAATCATTT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
24 11 0.27
25 26 0.63
26 4 0.10
ACGTcount: A:0.26, C:0.17, G:0.07, T:0.50
Consensus pattern (25 bp):
TATAGTTTCTATAGTTTTCACAATC
Found at i:37735382 original size:18 final size:18
Alignment explanation
Indices: 37735348--37735382 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37735338 ACATGCTCTC
*
37735348 ATAATCACTTATCACATA
1 ATAATCACTTATAACATA
*
37735366 ATAATCACTTTTAACAT
1 ATAATCACTTATAACAT
37735383 GTTTAACATG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.37
Consensus pattern (18 bp):
ATAATCACTTATAACATA
Found at i:37740666 original size:22 final size:22
Alignment explanation
Indices: 37740624--37740664 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
37740614 TCTCATCATT
*
37740624 CTCTTCTTTTTTTTTCTTTTCA
1 CTCTTCTTTTTTTCTCTTTTCA
37740646 CTCTT-TTTTTTTCTCTTTT
1 CTCTTCTTTTTTTCTCTTTT
37740665 TCTCTTTCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (22 bp):
CTCTTCTTTTTTTCTCTTTTCA
Found at i:37740669 original size:20 final size:20
Alignment explanation
Indices: 37740622--37740671 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
37740612 ACTCTCATCA
*
37740622 TTCTCTTCTTTTTTTTTCTTT
1 TTCTCTT-TTTTTTTCTCTTT
*
37740643 TCACTCTTTTTTTTTCTCTTT
1 T-TCTCTTTTTTTTTCTCTTT
37740664 TTCTCTTT
1 TTCTCTTT
37740672 CTCGCTCAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 6 0.24
21 14 0.56
22 5 0.20
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (20 bp):
TTCTCTTTTTTTTTCTCTTT
Found at i:37749096 original size:20 final size:21
Alignment explanation
Indices: 37749065--37749110 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
37749055 ATCATTAATT
37749065 TTGAAGTTTGAATCAAAATGC
1 TTGAAGTTTGAATCAAAATGC
37749086 TTGAA-TTTGAATCAAAATGC
1 TTGAAGTTTGAATCAAAATGC
37749106 TTGAA
1 TTGAA
37749111 CAAATTCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 20 0.80
21 5 0.20
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.35
Consensus pattern (21 bp):
TTGAAGTTTGAATCAAAATGC
Found at i:37753568 original size:33 final size:34
Alignment explanation
Indices: 37753519--37753592 Score: 98
Period size: 33 Copynumber: 2.2 Consensus size: 34
37753509 AGATTTAAAC
*
37753519 AAATTAATTACTAACACTTATTTAAG-TTGAACTA
1 AAATTAAATACTAACACTTATTTAAGCTT-AACTA
*
37753553 AAATTAAAT-CTAACACTTATTTGAGCTTAACTA
1 AAATTAAATACTAACACTTATTTAAGCTTAACTA
*
37753586 AATTTAA
1 AAATTAA
37753593 TAAACCAACT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
33 26 0.72
34 10 0.28
ACGTcount: A:0.45, C:0.12, G:0.05, T:0.38
Consensus pattern (34 bp):
AAATTAAATACTAACACTTATTTAAGCTTAACTA
Found at i:37756901 original size:31 final size:31
Alignment explanation
Indices: 37756863--37756924 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
37756853 GAAATTATAA
37756863 CAAAGAACGTTTCTTGATGCCTAAGAATGAT
1 CAAAGAACGTTTCTTGATGCCTAAGAATGAT
37756894 CAAAGAACGTTTCTTGATGCCTAAGAATGAT
1 CAAAGAACGTTTCTTGATGCCTAAGAATGAT
37756925 GTCGAATCAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (31 bp):
CAAAGAACGTTTCTTGATGCCTAAGAATGAT
Found at i:37761178 original size:18 final size:19
Alignment explanation
Indices: 37761157--37761193 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
37761147 AAAGAAAGAC
37761157 AGAAAAAGA-AATCAAAAA
1 AGAAAAAGAGAATCAAAAA
*
37761175 AGAAAAAGAGAATGAAAAA
1 AGAAAAAGAGAATCAAAAA
37761194 GAGCAAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.76, C:0.03, G:0.16, T:0.05
Consensus pattern (19 bp):
AGAAAAAGAGAATCAAAAA
Found at i:37762966 original size:33 final size:34
Alignment explanation
Indices: 37762929--37763000 Score: 103
Period size: 33 Copynumber: 2.1 Consensus size: 34
37762919 GAGTTAGTTT
37762929 ATTAAATTTAGTTCA-GCTCAAATAAGTGTTAG-A
1 ATTAAATTTAGTTCACG-TCAAATAAGTGTTAGAA
* *
37762962 ATTAATTTTAGTTCACGTTAAATAAGTGTTAGAA
1 ATTAAATTTAGTTCACGTCAAATAAGTGTTAGAA
37762996 ATTAA
1 ATTAA
37763001 TTTGTTTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
33 28 0.80
34 7 0.20
ACGTcount: A:0.40, C:0.07, G:0.14, T:0.39
Consensus pattern (34 bp):
ATTAAATTTAGTTCACGTCAAATAAGTGTTAGAA
Found at i:37769053 original size:18 final size:17
Alignment explanation
Indices: 37769030--37769068 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
37769020 CTCTTTTTGG
37769030 TCTTTTTCATTCTCTTTT
1 TCTTTTTCATT-TCTTTT
*
37769048 TCTTTTTTGATTTCTTTT
1 TC-TTTTTCATTTCTTTT
37769066 TCT
1 TCT
37769069 GTCTTCCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 1 0.05
18 10 0.53
19 8 0.42
ACGTcount: A:0.05, C:0.18, G:0.03, T:0.74
Consensus pattern (17 bp):
TCTTTTTCATTTCTTTT
Found at i:37774453 original size:27 final size:27
Alignment explanation
Indices: 37774423--37774600 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37774413 ATATTGAGTC
* * * *
37774423 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
37774450 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37774477 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
37774505 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
37774532 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
37774559 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37774586 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37774601 GTTCAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:37774562 original size:82 final size:81
Alignment explanation
Indices: 37774444--37774599 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37774434 TGCTATATAA
* *
37774444 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
37774509 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
37774526 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
37774590 CACTTAGTGC
65 CACTTAGTGC
37774600 TGTTCAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37789308 original size:18 final size:18
Alignment explanation
Indices: 37789285--37789324 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
37789275 GACTCAAAAA
*
37789285 AGGATACATATAAGGGTT
1 AGGATACATATAAGGGCT
37789303 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
37789321 AGGA
1 AGGA
37789325 AACGCACCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.40, C:0.07, G:0.30, T:0.23
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:37792783 original size:18 final size:19
Alignment explanation
Indices: 37792762--37792798 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
37792752 AAAGGAAGAC
37792762 AGAAAAAGA-AATCAAAAA
1 AGAAAAAGAGAATCAAAAA
*
37792780 AGAAAAAGAGAATGAAAAA
1 AGAAAAAGAGAATCAAAAA
37792799 GAGCAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.76, C:0.03, G:0.16, T:0.05
Consensus pattern (19 bp):
AGAAAAAGAGAATCAAAAA
Found at i:37794592 original size:33 final size:34
Alignment explanation
Indices: 37794555--37794626 Score: 119
Period size: 33 Copynumber: 2.1 Consensus size: 34
37794545 GAGTTAGTTT
*
37794555 ATTAAATTTAGTTCAGCTTAAATAAGTGTTAG-A
1 ATTAAATTTAGTTCACCTTAAATAAGTGTTAGTA
*
37794588 ATTAATTTTAGTTCACCTTAAATAAGTGTTAGTA
1 ATTAAATTTAGTTCACCTTAAATAAGTGTTAGTA
37794622 ATTAA
1 ATTAA
37794627 TTTGTTTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
33 30 0.83
34 6 0.17
ACGTcount: A:0.39, C:0.07, G:0.12, T:0.42
Consensus pattern (34 bp):
ATTAAATTTAGTTCACCTTAAATAAGTGTTAGTA
Found at i:37799576 original size:39 final size:39
Alignment explanation
Indices: 37799372--37799594 Score: 171
Period size: 40 Copynumber: 5.6 Consensus size: 39
37799362 TTGAATGCTG
* * * * * *
37799372 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * * *
37799412 TCCGGACTGAGAT-CCGAAGGCTTTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGC-ATTGTGCGAGTTACTAAA
* * * *
37799451 TTTCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
* **
37799492 TCCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* *
37799532 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
37799571 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
37799595 TGAACGAGGA
Statistics
Matches: 150, Mismatches: 26, Indels: 15
0.79 0.14 0.08
Matches are distributed among these distances:
39 38 0.25
40 100 0.67
41 12 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:37799614 original size:79 final size:80
Alignment explanation
Indices: 37799454--37799629 Score: 203
Period size: 79 Copynumber: 2.2 Consensus size: 80
37799444 ATACAAATTT
* * * * *
37799454 CGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGT
1 CGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGA
** *
37799519 ACGAGTTGTTAAATC
66 ACGAGGAGCTAAATC
* * * * *
37799534 CGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGA
1 CGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGA
*
37799598 ACGAGGAGCTATATC
66 ACGAGGAGCTAAATC
*
37799613 C-GGTTAAATCCCGAAGG
1 CGGGTTAAGTCCCGAAGG
37799630 TACGTGATTT
Statistics
Matches: 80, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.17
79 50 0.62
80 16 0.20
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
CGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGA
ACGAGGAGCTAAATC
Found at i:37807340 original size:28 final size:28
Alignment explanation
Indices: 37807308--37807362 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
37807298 TCGGCTGGAC
* *
37807308 TTAGACATCATTAA-ATCTTGTAATAAAA
1 TTAGACA-CATTAATAACATGTAATAAAA
37807336 TTAGACACATTAATAACATGTAATAAA
1 TTAGACACATTAATAACATGTAATAAA
37807363 TTAAAACACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 6 0.25
28 18 0.75
ACGTcount: A:0.49, C:0.11, G:0.07, T:0.33
Consensus pattern (28 bp):
TTAGACACATTAATAACATGTAATAAAA
Found at i:37812139 original size:27 final size:29
Alignment explanation
Indices: 37812100--37812153 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
37812090 CGGCTGGACT
*
37812100 TAGACATCATTAA-AACTTGTAATAAAAG
1 TAGACATCATTAATAACATGTAATAAAAG
37812128 TAGACA-CATTAATAACATGTAATAAA
1 TAGACATCATTAATAACATGTAATAAA
37812154 TTAAAACACA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 6 0.25
28 18 0.75
ACGTcount: A:0.52, C:0.11, G:0.09, T:0.28
Consensus pattern (29 bp):
TAGACATCATTAATAACATGTAATAAAAG
Found at i:37818717 original size:29 final size:29
Alignment explanation
Indices: 37818654--37818721 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
37818644 TAATCAACCA
37818654 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
37818683 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
37818712 CGCACACTTA
1 CGCACACTTA
37818722 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:37818862 original size:29 final size:29
Alignment explanation
Indices: 37818828--37818895 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 29
37818818 TAATCAACCA
*
37818828 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
37818857 CGCACACTTAGTGCCATGCATTTTAAGTT
1 CGCACACTTAGTGCCATGCACTTTAAACT
37818886 CGCACACTTA
1 CGCACACTTA
37818896 CCTTTTCCGC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:37819065 original size:29 final size:29
Alignment explanation
Indices: 37819002--37819069 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
37818992 TAATCAACCA
*
37819002 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
37819031 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
37819060 CGCACACTTA
1 CGCACACTTA
37819070 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:37819210 original size:29 final size:30
Alignment explanation
Indices: 37819171--37819249 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
37819161 CTTAATAATC
37819171 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
37819201 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
37819230 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
37819250 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:37819243 original size:174 final size:174
Alignment explanation
Indices: 37818543--37819218 Score: 1280
Period size: 174 Copynumber: 3.9 Consensus size: 174
37818533 AACTCAAGGT
* * *
37818543 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
*
37818608 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
37818673 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
37818717 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
37818782 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
* *
37818847 ACTTTAAACTCGCACACTTAGTGCCATGCATTTTAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
37818891 ACTTACCTTTTCCGCTATCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
37818956 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
37819021 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
37819065 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
37819130 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
*
37819195 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
37819219 TGTACAATTT
Statistics
Matches: 491, Mismatches: 11, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 491 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:37827341 original size:29 final size:29
Alignment explanation
Indices: 37827278--37827345 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
37827268 ATAATCAACC
37827278 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
37827307 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
37827336 CGCACACTTA
1 CGCACACTTA
37827346 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:37827515 original size:29 final size:29
Alignment explanation
Indices: 37827452--37827519 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
37827442 TAATCAACCG
37827452 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
37827481 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
37827510 CGCACACTTA
1 CGCACACTTA
37827520 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:37827523 original size:174 final size:174
Alignment explanation
Indices: 37827001--37827841 Score: 1556
Period size: 173 Copynumber: 4.9 Consensus size: 174
37826991 AACTCAAGGT
* *
37827001 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
37827066 GAAAATATATATTGAGTTCG-ACACATAGTGCTTAATAATCAA-C-CGCACACTTAGTGCCATG-
66 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
37827127 ACTTTAAACTCACACACTTAGTG-CATGCATTTCAAGTTC-CAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
37827169 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
37827234 G-AAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACC-CGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
37827297 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
37827341 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
37827406 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
37827471 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
37827515 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
37827580 GAAAATATATATTGGGTTCGCACACATAGTGCT-AATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
37827644 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
37827688 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
37827753 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
*
37827818 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
37827842 TGTACAATTT
Statistics
Matches: 659, Mismatches: 6, Indels: 10
0.98 0.01 0.01
Matches are distributed among these distances:
167 17 0.03
168 85 0.13
169 19 0.03
170 23 0.03
171 16 0.02
172 69 0.10
173 216 0.33
174 214 0.32
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:37827676 original size:347 final size:344
Alignment explanation
Indices: 37827001--37827841 Score: 1557
Period size: 347 Copynumber: 2.4 Consensus size: 344
37826991 AACTCAAGGT
* *
37827001 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
37827066 GAAAATATATATTGAGTTCG-ACACATAGTGCTTAATAATCAA-C-CGCACACTTAGTGCCATGA
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGA
37827128 CTTTAAACTCACACACTTAGTG-CATGCATTTCAAGTTCCACACTTACCTTTTCCGCTGTCCAAA
131 CTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCCACACTTACCTTTTCCGCTGTCCAAA
37827192 ATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAATATATATTGGGTTCGCACA
196 ATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAATATATATTGGGTTCGCACA
37827257 CATAGTGCTCAATAATCAACCCGCACACTTAGTGCCATGCACTTTAAACTCACACACTTAGTGCC
261 CATAGTGCTCAATAATCAACCCGCACACTTAGTGCCATGCACTTTAAACTCACACACTTAGTGCC
37827322 ATGCATTTCAAGTTCGCAC
326 ATGCATTTCAAGTTCGCAC
37827341 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
37827406 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATG-
37827471 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCA
130 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTC-CACACTTACCTTTTCCGCTGTCCA
37827536 AAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGC
194 AAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAG-AAATATATATTGGGTTCGC
37827601 ACACATAGTGCT-AATAATCAACCGCGCACACTTAGTGCCATGCACTTTAAACTCACACACTTAG
258 ACACATAGTGCTCAATAATCAACC-CGCACACTTAGTGCCATGCACTTTAAACTCACACACTTAG
37827665 TGCCATGCATTTCAAGTTCGCAC
322 TGCCATGCATTTCAAGTTCGCAC
37827688 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
37827753 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATG-
*
37827818 ACTTTAAACTCGCACACTTAGTGC
130 ACTTTAAACTCACACACTTAGTGC
37827842 TGTACAATTT
Statistics
Matches: 486, Mismatches: 7, Indels: 9
0.97 0.01 0.02
Matches are distributed among these distances:
340 82 0.17
341 21 0.04
342 1 0.00
343 18 0.04
344 23 0.05
345 16 0.03
346 80 0.16
347 245 0.50
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (344 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGA
CTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCCACACTTACCTTTTCCGCTGTCCAAA
ATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAATATATATTGGGTTCGCACA
CATAGTGCTCAATAATCAACCCGCACACTTAGTGCCATGCACTTTAAACTCACACACTTAGTGCC
ATGCATTTCAAGTTCGCAC
Found at i:37827688 original size:29 final size:29
Alignment explanation
Indices: 37827625--37827692 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
37827615 TAATCAACCG
37827625 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
37827654 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
37827683 CGCACACTTA
1 CGCACACTTA
37827693 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:37827833 original size:29 final size:30
Alignment explanation
Indices: 37827794--37827872 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
37827784 CTTAATAATC
37827794 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
37827824 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
37827853 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
37827873 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:37832388 original size:34 final size:34
Alignment explanation
Indices: 37832332--37832414 Score: 89
Period size: 34 Copynumber: 2.4 Consensus size: 34
37832322 GTCAATCATT
*
37832332 CAGTAGATAG-ATGCAATTTGGGCCTGAGCAAATTA
1 CAGTA-ATAGTAT-CAATGTGGGCCTGAGCAAATTA
* **
37832367 CAGT-ATCAGTATCAATGTGGGCCTTAGCCCATTA
1 CAGTAAT-AGTATCAATGTGGGCCTGAGCAAATTA
37832401 CAGTAATAGTATCA
1 CAGTAATAGTATCA
37832415 GTGCAGTAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
33 2 0.05
34 31 0.76
35 8 0.20
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.28
Consensus pattern (34 bp):
CAGTAATAGTATCAATGTGGGCCTGAGCAAATTA
Found at i:37839013 original size:12 final size:12
Alignment explanation
Indices: 37838996--37839022 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
37838986 ATTCCGAAGT
37838996 ATATATATATAC
1 ATATATATATAC
37839008 ATATATATATAC
1 ATATATATATAC
37839020 ATA
1 ATA
37839023 AGTATGCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:37839537 original size:28 final size:28
Alignment explanation
Indices: 37839474--37839624 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
37839464 GAGATTGGCG
* * * *
37839474 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
* *
37839503 CTAAGTGTGCGAGCTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
37839531 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
37839559 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
37839587 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
37839614 CTGAGTGTGCG
1 CTAAGTGTGCG
37839625 GACTTAATAT
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.21
28 75 0.66
29 14 0.12
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:37841231 original size:27 final size:27
Alignment explanation
Indices: 37841183--37841393 Score: 246
Period size: 27 Copynumber: 7.9 Consensus size: 27
37841173 GAGTATTACA
* *
37841183 GTCA-TTTACCTTACAGGAGTATTTCG
1 GTCATTTTACCCTACAGGGGTATTTCG
* ** *
37841209 GTTATTTTACCCTATGGGGGTATTTCA
1 GTCATTTTACCCTACAGGGGTATTTCG
** **
37841236 GTCATTTTACTTTACAGGGGTATTTTA
1 GTCATTTTACCCTACAGGGGTATTTCG
*
37841263 ATCATTTTACCCTACAGGGGTATTTCG
1 GTCATTTTACCCTACAGGGGTATTTCG
* *
37841290 GTCATTTTACCTTACAAGGGTATTTCG
1 GTCATTTTACCCTACAGGGGTATTTCG
* **
37841317 GTCATTTTATCCTATGGGGGTATTTCG
1 GTCATTTTACCCTACAGGGGTATTTCG
*
37841344 ATCATTTTACCCT-CAGGGGTATTTCG
1 GTCATTTTACCCTACAGGGGTATTTCG
*
37841370 GTCATTTTACCCTACAAGGGTATT
1 GTCATTTTACCCTACAGGGGTATT
37841394 GTGACAGCCC
Statistics
Matches: 152, Mismatches: 31, Indels: 3
0.82 0.17 0.02
Matches are distributed among these distances:
26 26 0.17
27 126 0.83
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTTCG
Found at i:37841259 original size:54 final size:54
Alignment explanation
Indices: 37841175--37841383 Score: 271
Period size: 54 Copynumber: 3.9 Consensus size: 54
37841165 TACAACAAGA
* * *
37841175 GTATTACAGTCA-TTTACCTTACAGGAGTATTTCGGTTATTTTACCCTATGGGG
1 GTATTTCAGTCATTTTACCTTACAGGGGTATTTCGGTCATTTTACCCTATGGGG
* *** **
37841228 GTATTTCAGTCATTTTACTTTACAGGGGTATTTTAATCATTTTACCCTACAGGG
1 GTATTTCAGTCATTTTACCTTACAGGGGTATTTCGGTCATTTTACCCTATGGGG
* * *
37841282 GTATTTCGGTCATTTTACCTTACAAGGGTATTTCGGTCATTTTATCCTATGGGG
1 GTATTTCAGTCATTTTACCTTACAGGGGTATTTCGGTCATTTTACCCTATGGGG
*
37841336 GTATTTC-GATCATTTTACCCT-CAGGGGTATTTCGGTCATTTTACCCTA
1 GTATTTCAG-TCATTTTACCTTACAGGGGTATTTCGGTCATTTTACCCTA
37841384 CAAGGGTATT
Statistics
Matches: 133, Mismatches: 21, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
53 37 0.28
54 96 0.72
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.42
Consensus pattern (54 bp):
GTATTTCAGTCATTTTACCTTACAGGGGTATTTCGGTCATTTTACCCTATGGGG
Found at i:37841311 original size:81 final size:81
Alignment explanation
Indices: 37841187--37841393 Score: 274
Period size: 81 Copynumber: 2.6 Consensus size: 81
37841177 ATTACAGTCA
* * * *** *
37841187 TTTACCTTACAGGAGTATTTCGGTTATTTTACCCTATGGGGGTATTTCAGTCATTTTA-CTTTAC
1 TTTACCCTACAGGGGTATTTCGGTCATTTTACCCTACAAGGGTATTTCAGTCATTTTATC-CTAC
*
37841251 AGGGGTATTTTAATCAT
65 AGGGGTATTTCAATCAT
* * **
37841268 TTTACCCTACAGGGGTATTTCGGTCATTTTACCTTACAAGGGTATTTCGGTCATTTTATCCTATG
1 TTTACCCTACAGGGGTATTTCGGTCATTTTACCCTACAAGGGTATTTCAGTCATTTTATCCTACA
*
37841333 GGGGTATTTCGATCAT
66 GGGGTATTTCAATCAT
37841349 TTTACCCT-CAGGGGTATTTCGGTCATTTTACCCTACAAGGGTATT
1 TTTACCCTACAGGGGTATTTCGGTCATTTTACCCTACAAGGGTATT
37841394 GTGACAGCCC
Statistics
Matches: 111, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
80 36 0.32
81 74 0.67
82 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.42
Consensus pattern (81 bp):
TTTACCCTACAGGGGTATTTCGGTCATTTTACCCTACAAGGGTATTTCAGTCATTTTATCCTACA
GGGGTATTTCAATCAT
Found at i:37843143 original size:27 final size:27
Alignment explanation
Indices: 37843112--37843289 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37843102 TAAATTGTAC
37843112 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37843139 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37843165 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37843193 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
37843221 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37843248 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37843275 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37843290 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37843226 original size:82 final size:81
Alignment explanation
Indices: 37843113--37843268 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37843103 AAATTGTACA
* *
37843113 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37843177 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37843194 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37843259 TGCGAGTTGA
65 TGCGAATTGA
37843269 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37843280 original size:82 final size:81
Alignment explanation
Indices: 37843109--37843289 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
37843099 GATTAAATTG
* *
37843109 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37843174 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37843190 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37843254 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37843272 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37843290 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37858524 original size:20 final size:19
Alignment explanation
Indices: 37858499--37858549 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
37858489 TTAATTTATT
*
37858499 TTATTAATTTAATATTAAAG
1 TTATTAATTTAATA-TAAAA
37858519 TTATTATATTT-ATATAAAA
1 TTATTA-ATTTAATATAAAA
37858538 TT-TTAATTTAAT
1 TTATTAATTTAAT
37858550 GTTTATCTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
17 4 0.14
18 5 0.18
19 6 0.21
20 9 0.32
21 4 0.14
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
TTATTAATTTAATATAAAA
Found at i:37859586 original size:35 final size:33
Alignment explanation
Indices: 37859543--37859783 Score: 290
Period size: 32 Copynumber: 7.2 Consensus size: 33
37859533 TCACTTGTCT
* *
37859543 TTTCTTGCAGGGAATATTTCCTGTTCACGCATTA
1 TTTCTTGCAGGGAATCTCTCCTGTTCA-GCATTA
* * *
37859577 TTCTGTTGCAGGGAATCTTTCCTGTTCA-CATCA
1 TT-TCTTGCAGGGAATCTCTCCTGTTCAGCATTA
37859610 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTA
1 TTTCTTGCAGGGAATCTCTCCTGTTCA-GCATTA
* * *
37859644 TTTTGTTGCAGGGAATCTTTCCTGTTCA-CATCA
1 -TTTCTTGCAGGGAATCTCTCCTGTTCAGCATTA
*
37859677 TTTCTTGCAGGGAATCTCTCCTGTTCACGGATTA
1 TTTCTTGCAGGGAATCTCTCCTGTTCA-GCATTA
* *
37859711 TTTTGTTGCAGGGAATCTCTCCTGTTCA-CATCA
1 -TTTCTTGCAGGGAATCTCTCCTGTTCAGCATTA
*
37859744 TTTCTTGCAGGGAATCTCTCCTGTTCATGTATTA
1 TTTCTTGCAGGGAATCTCTCCTGTTCA-GCATTA
37859778 TTTCTT
1 TTTCTT
37859784 TTTGGACCTG
Statistics
Matches: 179, Mismatches: 19, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
32 74 0.41
33 13 0.07
34 18 0.10
35 74 0.41
ACGTcount: A:0.18, C:0.23, G:0.18, T:0.41
Consensus pattern (33 bp):
TTTCTTGCAGGGAATCTCTCCTGTTCAGCATTA
Found at i:37859651 original size:67 final size:67
Alignment explanation
Indices: 37859543--37859780 Score: 413
Period size: 67 Copynumber: 3.6 Consensus size: 67
37859533 TCACTTGTCT
* * *
37859543 TTTCTTGCAGGGAATATTTCCTGTTCACGCATTATTCTGTTGCAGGGAATCTTTCCTGTTCACAT
1 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTTTCCTGTTCACAT
37859608 CA
66 CA
37859610 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTTTCCTGTTCACAT
1 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTTTCCTGTTCACAT
37859675 CA
66 CA
* *
37859677 TTTCTTGCAGGGAATCTCTCCTGTTCACGGATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAT
1 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTTTCCTGTTCACAT
37859742 CA
66 CA
* *
37859744 TTTCTTGCAGGGAATCTCTCCTGTTCATGTATTATTT
1 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTT
37859781 CTTTTTGGAC
Statistics
Matches: 164, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 164 1.00
ACGTcount: A:0.18, C:0.23, G:0.18, T:0.41
Consensus pattern (67 bp):
TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTTTCCTGTTCACAT
CA
Found at i:37860415 original size:20 final size:18
Alignment explanation
Indices: 37860368--37860458 Score: 58
Period size: 17 Copynumber: 5.3 Consensus size: 18
37860358 CATGATAAAA
37860368 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
37860385 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
37860405 ATTAAATTAATA---AA-
1 ATTAAATTAATATTTAAT
*
37860419 A-TACAATTAAGA--TAAGT
1 ATTA-AATTAATATTTAA-T
37860436 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
37860453 ATTAAA
1 ATTAAA
37860459 CTATTAAACT
Statistics
Matches: 61, Mismatches: 1, Indels: 24
0.71 0.01 0.28
Matches are distributed among these distances:
13 2 0.03
14 8 0.13
15 4 0.07
16 1 0.02
17 22 0.36
18 6 0.10
19 3 0.05
20 15 0.25
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:37866907 original size:10 final size:9
Alignment explanation
Indices: 37866851--37866937 Score: 54
Period size: 10 Copynumber: 9.2 Consensus size: 9
37866841 AATTTCTACT
*
37866851 AAATTCTAA
1 AAATTATAA
37866860 TAAATTA-AA
1 -AAATTATAA
37866869 AACATT-TAA
1 AA-ATTATAA
*
37866878 AATTTATAGA
1 AAATTATA-A
37866888 AAATTCATAA
1 AAATT-ATAA
37866898 AAACTTATAA
1 AAA-TTATAA
37866908 ATAA-TATAA
1 A-AATTATAA
*
37866917 AAATTCTAA
1 AAATTATAA
*
37866926 TAAAATATAA
1 -AAATTATAA
37866936 AA
1 AA
37866938 GTTAGAAAAT
Statistics
Matches: 62, Mismatches: 6, Indels: 19
0.71 0.07 0.22
Matches are distributed among these distances:
8 6 0.10
9 23 0.37
10 26 0.42
11 7 0.11
ACGTcount: A:0.61, C:0.06, G:0.01, T:0.32
Consensus pattern (9 bp):
AAATTATAA
Found at i:37866918 original size:19 final size:19
Alignment explanation
Indices: 37866894--37866937 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
37866884 TAGAAAATTC
*
37866894 ATAAAAACTTATAA-ATAAT
1 ATAAAAA-TTATAATAAAAT
*
37866913 ATAAAAATTCTAATAAAAT
1 ATAAAAATTATAATAAAAT
37866932 ATAAAA
1 ATAAAA
37866938 GTTAGAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (19 bp):
ATAAAAATTATAATAAAAT
Found at i:37878021 original size:29 final size:29
Alignment explanation
Indices: 37877950--37878025 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
37877940 CACGACTAAG
*
37877950 CACACACTCGTGTGGCTCACACAGCCAGA
1 CACACACTCGTGTGGCTCACACAGCCAAA
* * * * * *
37877979 CAAACGCCCTTGTGGCTTACACGGCCAAA
1 CACACACTCGTGTGGCTCACACAGCCAAA
37878008 CACACACTCGTGTGGCTC
1 CACACACTCGTGTGGCTC
37878026 CGACTGCCAA
Statistics
Matches: 35, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.25, C:0.37, G:0.21, T:0.17
Consensus pattern (29 bp):
CACACACTCGTGTGGCTCACACAGCCAAA
Found at i:37878034 original size:29 final size:28
Alignment explanation
Indices: 37877950--37878035 Score: 73
Period size: 29 Copynumber: 3.0 Consensus size: 28
37877940 CACGACTAAG
*
37877950 CACACACTCGTGTGGCTCACACAGCCAGA
1 CACACACTCGTGTGGCTC-CACAGCCAAA
* * * * * *
37877979 CAAACGCCCTTGTGGCTTACACGGCCAAA
1 CACACACTCGTGTGGC-TCCACAGCCAAA
*
37878008 CACACACTCGTGTGGCTCCGACTGCCAA
1 CACACACTCGTGTGGCTCC-ACAGCCAA
37878036 TTTTAGTTTC
Statistics
Matches: 42, Mismatches: 13, Indels: 4
0.71 0.22 0.07
Matches are distributed among these distances:
28 2 0.05
29 39 0.93
30 1 0.02
ACGTcount: A:0.26, C:0.37, G:0.21, T:0.16
Consensus pattern (28 bp):
CACACACTCGTGTGGCTCCACAGCCAAA
Found at i:37880780 original size:16 final size:16
Alignment explanation
Indices: 37880759--37880798 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
37880749 GGCCCATGTT
37880759 TTGGCGAACACTAGCA
1 TTGGCGAACACTAGCA
37880775 TTGGCGAACACTAGCA
1 TTGGCGAACACTAGCA
37880791 TTGGCGAA
1 TTGGCGAA
37880799 TCCTCTTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.28, T:0.20
Consensus pattern (16 bp):
TTGGCGAACACTAGCA
Found at i:37886079 original size:17 final size:17
Alignment explanation
Indices: 37886057--37886095 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
37886047 TTAAGATAAG
*
37886057 TATTAAATTTAATT-AAA
1 TATTAAATCT-ATTAAAA
37886074 TATTAAATCTATTAAAA
1 TATTAAATCTATTAAAA
37886091 TATTA
1 TATTA
37886096 TTATTTTTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (17 bp):
TATTAAATCTATTAAAA
Found at i:37901203 original size:41 final size:41
Alignment explanation
Indices: 37900966--37901201 Score: 204
Period size: 41 Copynumber: 5.7 Consensus size: 41
37900956 CTACCTTTTG
* * *
37900966 GGGCTTTAACGGCGTTTTTAAAAAAAGCGTCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTT-GAAAAAGCGCCGCTAATGCTCA
** * * *
37901008 GATCTTTAACGGCGTTTTTGAAAAAGCGCTGTTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCA
** * * * *
37901049 GATCTTTAGCAGCGTTTTTGAAAAGGCGGCGCTAATACTCA
1 GGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCA
* * * *
37901090 AGGCTTTAGCGGCGTTTTTCAAGAAGTGCCGCTAATGCTC-
1 GGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCA
* * ** * * **
37901130 GAGGCTTTAGAGCCGTTTTCCAAGAAGCGCCACTAATGCTTG
1 G-GGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCA
*
37901172 GGGCTTTAGCGGCGGTTTTGAAAAAGCGCC
1 GGGCTTTAGCGGCGTTTTTGAAAAAGCGCC
37901202 ACAAAAACAT
Statistics
Matches: 156, Mismatches: 36, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
41 138 0.88
42 18 0.12
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCA
Found at i:37901874 original size:21 final size:21
Alignment explanation
Indices: 37901850--37901892 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
37901840 GGGGTTAGTG
*
37901850 GTTAGGGATTTGGGGTTAAGA
1 GTTAGGGATTTAGGGTTAAGA
* *
37901871 GTTAGTGATTTAGGGTTTAGA
1 GTTAGGGATTTAGGGTTAAGA
37901892 G
1 G
37901893 ATTTAGGATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.40, T:0.37
Consensus pattern (21 bp):
GTTAGGGATTTAGGGTTAAGA
Done.