Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 124 of 240
Found at i:38626168 original size:54 final size:54
Alignment explanation
Indices: 38626101--38626352 Score: 227
Period size: 54 Copynumber: 4.5 Consensus size: 54
38626091 GTTTTGACTA
* *
38626101 AAATA-CCTCCATAGGGTGAAATGACCGAAATACCCCCATAGGGTAGAATGACCG
1 AAATACCCT-CATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCG
* **
38626155 AAATACCCTCATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGATTG
1 AAATACCCTCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCG
* * * *
38626209 AAATACCCTCATAGGGTAAAATGACTGAAAAATGATTGAAATACCCCCGTAGGGTAAAATGATCA
1 AAATACCCTCATAGGGTAAAATGAC-----------CGAAATACCCCCATAGGGTAAAATGACCG
** * * * ***
38626274 AAATACCCTTGTAGGGTAAAATGATCGAAATATCTCCATAGGGTAAAATGGTTG
1 AAATACCCTCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCG
*
38626328 AAATACCCCCATAGGGTAAAATGAC
1 AAATACCCTCATAGGGTAAAATGAC
38626353 TGTTATAACC
Statistics
Matches: 162, Mismatches: 24, Indels: 24
0.77 0.11 0.11
Matches are distributed among these distances:
54 112 0.69
55 3 0.02
65 47 0.29
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.21
Consensus pattern (54 bp):
AAATACCCTCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCG
Found at i:38626267 original size:27 final size:27
Alignment explanation
Indices: 38626237--38626351 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 27
38626227 AAATGACTGA
* *
38626237 AAAATGATTGAAATACCCCCGTAGGGT
1 AAAATGATCGAAATACCCCCATAGGGT
* ***
38626264 AAAATGATCAAAATACCCTTGTAGGGT
1 AAAATGATCGAAATACCCCCATAGGGT
* *
38626291 AAAATGATCGAAATATCTCCATAGGGT
1 AAAATGATCGAAATACCCCCATAGGGT
* *
38626318 AAAATGGTTGAAATACCCCCATAGGGT
1 AAAATGATCGAAATACCCCCATAGGGT
38626345 AAAATGA
1 AAAATGA
38626352 CTGTTATAAC
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.41, C:0.16, G:0.20, T:0.23
Consensus pattern (27 bp):
AAAATGATCGAAATACCCCCATAGGGT
Found at i:38626278 original size:65 final size:65
Alignment explanation
Indices: 38626172--38626297 Score: 198
Period size: 65 Copynumber: 1.9 Consensus size: 65
38626162 CTCATAGGGT
**
38626172 AAAATGATCGAAATACCCCCATAGGGTAAAATGATTGAAATACCCTCATAGGGTAAAATGACTGA
1 AAAATGATCGAAATACCCCCATAGGGTAAAATGATCAAAATACCCTCATAGGGTAAAATGACTGA
* * **
38626237 AAAATGATTGAAATACCCCCGTAGGGTAAAATGATCAAAATACCCTTGTAGGGTAAAATGA
1 AAAATGATCGAAATACCCCCATAGGGTAAAATGATCAAAATACCCTCATAGGGTAAAATGA
38626298 TCGAAATATC
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
65 55 1.00
ACGTcount: A:0.43, C:0.16, G:0.19, T:0.22
Consensus pattern (65 bp):
AAAATGATCGAAATACCCCCATAGGGTAAAATGATCAAAATACCCTCATAGGGTAAAATGACTGA
Found at i:38626330 original size:92 final size:92
Alignment explanation
Indices: 38626154--38626323 Score: 252
Period size: 92 Copynumber: 1.8 Consensus size: 92
38626144 TAGAATGACC
* * *
38626154 GAAATACCCTCATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGATTGAAATACCCTC
1 GAAATACCCCCATAGGGTAAAATGATCAAAATACCCCCATAGGGTAAAATGATCGAAATACCCTC
38626219 ATAGGGTAAAATGACTGAAAAATGATT
66 ATAGGGTAAAATGACTGAAAAATGATT
* *** *
38626246 GAAATACCCCCGTAGGGTAAAATGATCAAAATACCCTTGTAGGGTAAAATGATCGAAATA-TCTC
1 GAAATACCCCCATAGGGTAAAATGATCAAAATACCCCCATAGGGTAAAATGATCGAAATACCCT-
38626310 CATAGGGTAAAATG
65 CATAGGGTAAAATG
38626324 GTTGAAATAC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
91 2 0.03
92 67 0.97
ACGTcount: A:0.41, C:0.16, G:0.19, T:0.23
Consensus pattern (92 bp):
GAAATACCCCCATAGGGTAAAATGATCAAAATACCCCCATAGGGTAAAATGATCGAAATACCCTC
ATAGGGTAAAATGACTGAAAAATGATT
Found at i:38626330 original size:119 final size:119
Alignment explanation
Indices: 38626127--38626354 Score: 366
Period size: 119 Copynumber: 1.9 Consensus size: 119
38626117 TGAAATGACC
* *
38626127 GAAATACCCCCATAGGGTAGAATGACCGAAATACCCTCATAGGGTAAAATGATCGAAATACCCCC
1 GAAATACCCCCATAGGGTAAAATGACCAAAATACCCTCATAGGGTAAAATGATCGAAATACCCCC
*
38626192 ATAGGGTAAAATGATTGAAATACCCTCATAGGGTAAAATGACTGAAAAATGATT
66 ATAGGGTAAAATGATTGAAATACCCCCATAGGGTAAAATGACTGAAAAATGATT
* * ** * *
38626246 GAAATACCCCCGTAGGGTAAAATGATCAAAATACCCTTGTAGGGTAAAATGATCGAAATATCTCC
1 GAAATACCCCCATAGGGTAAAATGACCAAAATACCCTCATAGGGTAAAATGATCGAAATACCCCC
*
38626311 ATAGGGTAAAATGGTTGAAATACCCCCATAGGGTAAAATGACTG
66 ATAGGGTAAAATGATTGAAATACCCCCATAGGGTAAAATGACTG
38626355 TTATAACCCT
Statistics
Matches: 99, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
119 99 1.00
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.22
Consensus pattern (119 bp):
GAAATACCCCCATAGGGTAAAATGACCAAAATACCCTCATAGGGTAAAATGATCGAAATACCCCC
ATAGGGTAAAATGATTGAAATACCCCCATAGGGTAAAATGACTGAAAAATGATT
Found at i:38632971 original size:18 final size:18
Alignment explanation
Indices: 38632948--38633001 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
38632938 TAGTGTTTAC
38632948 ATTATAGTATTATAGATT
1 ATTATAGTATTATAGATT
38632966 ATTATAG-ATT-TA-ATT
1 ATTATAGTATTATAGATT
* * *
38632981 TTTGTATGTGTTATAGATT
1 ATTATA-GTATTATAGATT
38633000 AT
1 AT
38633002 ACAATATATA
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
15 7 0.25
16 3 0.11
17 5 0.18
18 9 0.32
19 4 0.14
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.54
Consensus pattern (18 bp):
ATTATAGTATTATAGATT
Found at i:38636015 original size:19 final size:19
Alignment explanation
Indices: 38635992--38636054 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
38635982 GGCACATAAC
38635992 GTGCATATTGGCATACAAA
1 GTGCATATTGGCATACAAA
* * **
38636011 ATGCATCTTGGCGCACAAA
1 GTGCATATTGGCATACAAA
* * *
38636030 GCGCATATCGGCTTACAAA
1 GTGCATATTGGCATACAAA
38636049 GTGCAT
1 GTGCAT
38636055 CCTGGTGCCA
Statistics
Matches: 33, Mismatches: 11, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (19 bp):
GTGCATATTGGCATACAAA
Found at i:38636077 original size:53 final size:53
Alignment explanation
Indices: 38636019--38636121 Score: 181
Period size: 53 Copynumber: 1.9 Consensus size: 53
38636009 AAATGCATCT
*
38636019 TGGCGCACAAAGC-GCATATCGGCTTACAAAGTGCATCCTGGTGCCACAAATCC
1 TGGCGCA-AAAACTGCATATCGGCTTACAAAGTGCATCCTGGTGCCACAAATCC
38636072 TGGCGCAAAAACTGCATATCGGCTTACAAAGTGCATCCTGGTGCCACAAA
1 TGGCGCAAAAACTGCATATCGGCTTACAAAGTGCATCCTGGTGCCACAAA
38636122 CTCAAAAAGA
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
52 4 0.08
53 44 0.92
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.19
Consensus pattern (53 bp):
TGGCGCAAAAACTGCATATCGGCTTACAAAGTGCATCCTGGTGCCACAAATCC
Found at i:38647790 original size:32 final size:32
Alignment explanation
Indices: 38647739--38647875 Score: 195
Period size: 32 Copynumber: 4.3 Consensus size: 32
38647729 ATGGCTACAG
* *
38647739 GCCATAAGT-ACAGTAATATGATTGGCACAAA
1 GCCATCAGTAACAGTAATATGATCGGCACAAA
* * *
38647770 GCCATTAGTAGCAGTGATATGATCGGCACAAA
1 GCCATCAGTAACAGTAATATGATCGGCACAAA
38647802 GCCATCAGTAACAGTAATATGATCGGCACAAA
1 GCCATCAGTAACAGTAATATGATCGGCACAAA
* *
38647834 GCCATCAGTAACGGTAATATGATCGGCCCAAA
1 GCCATCAGTAACAGTAATATGATCGGCACAAA
*
38647866 GCCAACAGTA
1 GCCATCAGTA
38647876 GCATCGTAGC
Statistics
Matches: 95, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
31 8 0.08
32 87 0.92
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (32 bp):
GCCATCAGTAACAGTAATATGATCGGCACAAA
Found at i:38648131 original size:24 final size:24
Alignment explanation
Indices: 38648047--38648128 Score: 128
Period size: 24 Copynumber: 3.4 Consensus size: 24
38648037 CCATGCTCAG
38648047 AATCAGTCATACAAATCACAGACA
1 AATCAGTCATACAAATCACAGACA
* *
38648071 AATCAGTCATACCAATCACAAACA
1 AATCAGTCATACAAATCACAGACA
**
38648095 AATCAGTCATTTAAATCACAGACA
1 AATCAGTCATACAAATCACAGACA
38648119 AATCAGTCAT
1 AATCAGTCAT
38648129 TTACCCTATA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.48, C:0.24, G:0.07, T:0.21
Consensus pattern (24 bp):
AATCAGTCATACAAATCACAGACA
Found at i:38648183 original size:27 final size:26
Alignment explanation
Indices: 38648153--38648427 Score: 117
Period size: 27 Copynumber: 10.2 Consensus size: 26
38648143 CATTACGGTT
38648153 ATTTTACCTTACAGGGATATTTCGATC
1 ATTTTACCTTACAGGG-TATTTCGATC
* *** * *
38648180 ATTTAACCCTATGGGGGGTATTACGGTC
1 ATTTTA-CCT-TACAGGGTATTTCGATC
* * * * *
38648208 TTTTTACCCTACAGGGGCATTAT-GGTT
1 ATTTTACCTTACA-GGGTATT-TCGATC
* ** * *
38648235 ATTTTACCCTATGGGGTTTTTCGGTC
1 ATTTTACCTTACAGGGTATTTCGATC
* * *
38648261 ATTTTACCTTATAGGGGTATTACAATC
1 ATTTTACCTTACA-GGGTATTTCGATC
* * * * *
38648288 ATTTTACTTTACAAGGGCATTACAATA
1 ATTTTACCTTAC-AGGGTATTTCGATC
*
38648315 ATTTTACCTTACGAGGGTATTTCGGTC
1 ATTTTACCTTAC-AGGGTATTTCGATC
* *
38648342 ATTTTACCCATT-GAGGGTATTTCAATC
1 ATTTTA-CC-TTACAGGGTATTTCGATC
* * *
38648369 ATTTTACCCATT-GAGGGTATTTCAATG
1 ATTTTA-CC-TTACAGGGTATTTCGATC
*
38648396 ATTTTACCCATT-GAGGGTATTTCGATC
1 ATTTTA-CC-TTACAGGGTATTTCGATC
38648423 ATTTT
1 ATTTT
38648428 TCCCATCGAG
Statistics
Matches: 195, Mismatches: 44, Indels: 18
0.76 0.17 0.07
Matches are distributed among these distances:
25 1 0.01
26 20 0.10
27 150 0.77
28 18 0.09
29 6 0.03
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.41
Consensus pattern (26 bp):
ATTTTACCTTACAGGGTATTTCGATC
Found at i:38648277 original size:53 final size:54
Alignment explanation
Indices: 38648127--38648282 Score: 129
Period size: 55 Copynumber: 2.9 Consensus size: 54
38648117 CAAATCAGTC
** * * * ** * *
38648127 ATTT-ACCCTATAAGGGCATTACGGTTATTTTACCTTACAGGGATATT-TCGATC
1 ATTTAACCCTATGGGGGTATTACGGTCATTTTACCCTACAGGGGCATTAT-GGTT
*
38648180 ATTTAACCCTATGGGGGGTATTACGGTCTTTTTACCCTACAGGGGCATTATGGTT
1 ATTTAACCCTAT-GGGGGTATTACGGTCATTTTACCCTACAGGGGCATTATGGTT
* * * * * *
38648235 ATTTTACCCTAT-GGGGTTTTTCGGTCATTTTACCTTATAGGGGTATTA
1 ATTTAACCCTATGGGGGTATTACGGTCATTTTACCCTACAGGGGCATTA
38648283 CAATCATTTT
Statistics
Matches: 83, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
53 34 0.41
54 7 0.08
55 41 0.49
56 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.40
Consensus pattern (54 bp):
ATTTAACCCTATGGGGGTATTACGGTCATTTTACCCTACAGGGGCATTATGGTT
Found at i:38648368 original size:81 final size:81
Alignment explanation
Indices: 38648138--38648443 Score: 230
Period size: 81 Copynumber: 3.8 Consensus size: 81
38648128 TTTACCCTAT
** * * *
38648138 AAGGGCATTACGGTTATTTTACCTTAC-AGGGATATTTCGATCATTTAACCCTATGGGGGGTATT
1 AAGGGCATTACAATTATTTTACCTTACGAGGG-TATTTCGATCATTTTACCC-ATAGAGGGTATT
** * **
38648202 ACGGTCTTTTTACCCTAC
64 ACAATCATTTTACATTAC
* *** * * * * *
38648220 AGGGGCATTATGGTTATTTTACCCTATG-GGGTTTTTCGGTCATTTTACCTTATAG-GGGTATTA
1 AAGGGCATTACAATTATTTTACCTTACGAGGGTATTTCGATCATTTTACC-CATAGAGGGTATTA
*
38648283 CAATCATTTTACTTTAC
65 CAATCATTTTACATTAC
* * * *
38648300 AAGGGCATTACAATAATTTTACCTTACGAGGGTATTTCGGTCATTTTACCCATTGAGGGTATTTC
1 AAGGGCATTACAATTATTTTACCTTACGAGGGTATTTCGATCATTTTACCCATAGAGGGTATTAC
38648365 AATCATTTTACCCATT--
66 AATCATTTTA--CATTAC
* * * * * *
38648381 GAGGGTATTTCAATGATTTTACCCATT--GAGGGTATTTCGATCATTTTTCCCATCGAGGGTATT
1 AAGGGCATTACAATTATTTTA-CC-TTACGAGGGTATTTCGATCATTTTACCCATAGAGGGTATT
38648444 TTGGTAATTT
Statistics
Matches: 183, Mismatches: 33, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
80 44 0.24
81 106 0.58
82 28 0.15
83 5 0.03
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.40
Consensus pattern (81 bp):
AAGGGCATTACAATTATTTTACCTTACGAGGGTATTTCGATCATTTTACCCATAGAGGGTATTAC
AATCATTTTACATTAC
Found at i:38648373 original size:54 final size:54
Alignment explanation
Indices: 38648301--38648534 Score: 179
Period size: 54 Copynumber: 4.3 Consensus size: 54
38648291 TTACTTTACA
* * * *
38648301 AGGGCATTACAATAATTTTACCTTACGAGGGTATTTCGGTCATTTTACCCATTG
1 AGGGTATTTCAATCATTTTACCTTACGAGGGTATTTCGGTAATTTTACCCATTG
** *
38648355 AGGGTATTTCAATCATTTTACCCATT--GAGGGTATTTCAATGATTTTACCCATTG
1 AGGGTATTTCAATCATTTTA-CC-TTACGAGGGTATTTCGGTAATTTTACCCATTG
* * * * *
38648409 AGGGTATTTCGATCATTTTTCC-CATCGAGGGTATTTTGGTAATTTTACCCATCG
1 AGGGTATTTCAATCATTTTACCTTA-CGAGGGTATTTCGGTAATTTTACCCATTG
* *** * * * * * *
38648463 AGAGTATTTTGGTTAGTTTACCCGT-CGAGGGTATTTCGATAATTTTATCCATCG
1 AGGGTATTTCAATCATTTTA-CCTTACGAGGGTATTTCGGTAATTTTACCCATTG
** *
38648517 AATGTATTTCAGTCATTT
1 AGGGTATTTCAATCATTT
38648535 AACAAATATT
Statistics
Matches: 143, Mismatches: 30, Indels: 14
0.76 0.16 0.07
Matches are distributed among these distances:
53 2 0.01
54 135 0.94
55 4 0.03
56 2 0.01
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.41
Consensus pattern (54 bp):
AGGGTATTTCAATCATTTTACCTTACGAGGGTATTTCGGTAATTTTACCCATTG
Found at i:38648432 original size:27 final size:27
Alignment explanation
Indices: 38648326--38648534 Score: 213
Period size: 27 Copynumber: 7.7 Consensus size: 27
38648316 TTTTACCTTA
*
38648326 CGAGGGTATTTCGGTCATTTTACCCAT
1 CGAGGGTATTTCGATCATTTTACCCAT
* *
38648353 TGAGGGTATTTCAATCATTTTACCCAT
1 CGAGGGTATTTCGATCATTTTACCCAT
* * *
38648380 TGAGGGTATTTCAATGATTTTACCCAT
1 CGAGGGTATTTCGATCATTTTACCCAT
* *
38648407 TGAGGGTATTTCGATCATTTTTCCCAT
1 CGAGGGTATTTCGATCATTTTACCCAT
* * *
38648434 CGAGGGTATTTTGGTAATTTTACCCAT
1 CGAGGGTATTTCGATCATTTTACCCAT
* * * * * *
38648461 CGAGAGTATTTTGGTTAGTTTACCCGT
1 CGAGGGTATTTCGATCATTTTACCCAT
* *
38648488 CGAGGGTATTTCGATAATTTTATCCAT
1 CGAGGGTATTTCGATCATTTTACCCAT
**
38648515 CGAATGTATTTC-AGTCATTT
1 CGAGGGTATTTCGA-TCATTT
38648535 AACAAATATT
Statistics
Matches: 155, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 1 0.01
27 154 0.99
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (27 bp):
CGAGGGTATTTCGATCATTTTACCCAT
Found at i:38654593 original size:32 final size:32
Alignment explanation
Indices: 38654506--38654629 Score: 124
Period size: 32 Copynumber: 3.9 Consensus size: 32
38654496 ATAAGTACAA
** * * * *
38654506 TAATATGATTAGCATAAAGCCATCAGTAGCAG
1 TAATATGATCGGCACAAAGCCATTAGTAACGG
* * * *
38654538 TGATAAGATTGGCACACAA-CCATTAGTAATGG
1 TAATATGATCGGCACA-AAGCCATTAGTAACGG
38654570 TAATATGATCGGCACAAAGCCATTAGTAACGG
1 TAATATGATCGGCACAAAGCCATTAGTAACGG
* *
38654602 TAATATGATCGACACAAAGCCATCAGTA
1 TAATATGATCGGCACAAAGCCATTAGTA
38654630 GCATCACAGC
Statistics
Matches: 76, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
31 2 0.03
32 72 0.95
33 2 0.03
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.23
Consensus pattern (32 bp):
TAATATGATCGGCACAAAGCCATTAGTAACGG
Found at i:38658541 original size:50 final size:50
Alignment explanation
Indices: 38658424--38658750 Score: 340
Period size: 50 Copynumber: 6.6 Consensus size: 50
38658414 GATAATAACA
* * ** * **
38658424 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTC--CTGCAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCT-CGG
* * ** *
38658473 TGCCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGG
* * * ** *
38658523 TGCCTATGCCATATCCCAGACATGGTTTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGG
* * *
38658573 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGG
* * *
38658623 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACTTCTAATCTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGG
* * *
38658673 TGCCAATGCCATGTCCCAGACATGGTCTTACACTG-G--CTCACATATCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACA-TGAGACCTCTCATCTCGG
* *
38658721 TGTCGATGCCATGTCCCAGACATGGTCTTA
1 TGCCAATGCCATGTCCCAGACATGGTCTTA
38658751 TACGTGATTG
Statistics
Matches: 235, Mismatches: 40, Indels: 7
0.83 0.14 0.02
Matches are distributed among these distances:
48 34 0.14
49 36 0.15
50 162 0.69
51 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGG
Found at i:38658694 original size:150 final size:148
Alignment explanation
Indices: 38658424--38658703 Score: 400
Period size: 150 Copynumber: 1.9 Consensus size: 148
38658414 GATAATAACA
* *
38658424 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTGCACTGCCAATGCCATATCC
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCTATCCTG-ACTGCCAATGCCATATCC
* * * * * *
38658489 CAGATATGGTCTTACATGAGAGTTCTCATATCGGTGCCTATGCCATATCCCAGACATGGTTTTAC
65 CAGACATGGTCTTACATGAGACTTCTAATATCAGTGCCAATGCCATATCCCAGACATGGTCTTAC
38658554 GGGGGACCTCTCATCTCGG
130 GGGGGACCTCTCATCTCGG
* * *
38658573 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTG-GTGCCAATGCCATGT
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA--TCT-ATCCTGACTGCCAATGCCATAT
* *
38658637 CCCAGACATGGTCTTACATGAGACTTCTAATCTCAGTGCCAATGCCATGTCCCAGACATGGTCTT
63 CCCAGACATGGTCTTACATGAGACTTCTAATATCAGTGCCAATGCCATATCCCAGACATGGTCTT
38658702 AC
128 AC
38658704 ACTGGCTCAC
Statistics
Matches: 115, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
149 37 0.32
150 72 0.63
151 2 0.02
152 4 0.03
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (148 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCTATCCTGACTGCCAATGCCATATCCC
AGACATGGTCTTACATGAGACTTCTAATATCAGTGCCAATGCCATATCCCAGACATGGTCTTACG
GGGGACCTCTCATCTCGG
Found at i:38666057 original size:34 final size:34
Alignment explanation
Indices: 38666014--38666080 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
38666004 TGTAATTGAT
38666014 TATTGAATTGGAAAAGGTATGTTACTTTGGTTGG
1 TATTGAATTGGAAAAGGTATGTTACTTTGGTTGG
*
38666048 TATTGAATTGGGAAAGGTATGTTACTTTGGTTG
1 TATTGAATTGGAAAAGGTATGTTACTTTGGTTG
38666081 AGTTTCCTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.25, C:0.03, G:0.30, T:0.42
Consensus pattern (34 bp):
TATTGAATTGGAAAAGGTATGTTACTTTGGTTGG
Found at i:38671903 original size:14 final size:13
Alignment explanation
Indices: 38671855--38671904 Score: 52
Period size: 12 Copynumber: 4.0 Consensus size: 13
38671845 ACTGGTCATA
38671855 GAGAGA-ATTGAG
1 GAGAGATATTGAG
* *
38671867 GAGGGATATT-TG
1 GAGAGATATTGAG
38671879 GAGAGAT-TTGAG
1 GAGAGATATTGAG
38671891 GAGAGAATATTGAG
1 GAGAG-ATATTGAG
38671905 ATTTAGGGAG
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
11 2 0.07
12 18 0.60
13 5 0.17
14 5 0.17
ACGTcount: A:0.36, C:0.00, G:0.40, T:0.24
Consensus pattern (13 bp):
GAGAGATATTGAG
Found at i:38672608 original size:27 final size:27
Alignment explanation
Indices: 38672568--38672977 Score: 430
Period size: 27 Copynumber: 15.3 Consensus size: 27
38672558 AGAGGTCGAT
* * *
38672568 AAATGATCGAAATACCCCAATAAGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * *
38672595 AAATGACCGTAATACCCCCACAGGATA
1 AAATGACCGAAATACCCCCATAGGGTA
** *
38672622 AAATGACCGAAATACCTTCATAGGATA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
38672649 AAATAACCGAAATACCCCTATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
*
38672676 AAATGATCGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * * *
38672703 AAATAACTGAAATACCTCCATAGCGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * **
38672730 AAATGAACAAAATACCCTTATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* **
38672757 AAATGACCAAAATACCCTTATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * ** *
38672784 AAATGATCGAAGTATGCCTATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
38672811 GAATGACCGAAAT-GCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * *
38672837 GAATGACTGAAATACCCCCATAGGGCA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
38672864 AAATGATCAAAATA-CCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* ** *
38672890 GAATGAATGAAATACCCCTATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
*
38672917 AAATGACC-AATATACCCCCATAGAGTA
1 AAATGACCGAA-ATACCCCCATAGGGTA
38672944 AAATGACCGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
38672971 AAATGAC
1 AAATGAC
38672978 TGTTACACCC
Statistics
Matches: 316, Mismatches: 63, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
26 45 0.14
27 269 0.85
28 2 0.01
ACGTcount: A:0.43, C:0.21, G:0.17, T:0.19
Consensus pattern (27 bp):
AAATGACCGAAATACCCCCATAGGGTA
Found at i:38673384 original size:28 final size:28
Alignment explanation
Indices: 38673342--38673430 Score: 135
Period size: 28 Copynumber: 3.2 Consensus size: 28
38673332 ACTGTACCGA
*
38673342 TACTGTATTGAGCTAAGGCCCACATTGT
1 TACTGTATTGGGCTAAGGCCCACATTGT
*
38673370 TACTGTATTGGGCTAAGGCCCACATTAT
1 TACTGTATTGGGCTAAGGCCCACATTGT
* *
38673398 TACTGTATTGGGTTAAGGCCCACACTGT
1 TACTGTATTGGGCTAAGGCCCACATTGT
38673426 T-CTGT
1 TACTGT
38673431 TACTAAATAG
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 4 0.07
28 52 0.93
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.34
Consensus pattern (28 bp):
TACTGTATTGGGCTAAGGCCCACATTGT
Found at i:38677595 original size:18 final size:18
Alignment explanation
Indices: 38677574--38677608 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
38677564 TTTTTCTTTT
38677574 TCAATTT-TTTTCTCAATC
1 TCAATTTCTTTT-TCAATC
38677592 TCAATTTCTTTTTCAAT
1 TCAATTTCTTTTTCAAT
38677609 TTTCTTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (18 bp):
TCAATTTCTTTTTCAATC
Found at i:38678546 original size:19 final size:19
Alignment explanation
Indices: 38678521--38678567 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
38678511 TTTTTGTCAC
* * *
38678521 TTTTTTTTTGATTTTTTTAA
1 TTTTTTTTCGAATTTCTT-A
38678541 TTTTTTTTCGAATTTCTTA
1 TTTTTTTTCGAATTTCTTA
38678560 TTTTTTTT
1 TTTTTTTT
38678568 AAATCCAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.13, C:0.04, G:0.04, T:0.79
Consensus pattern (19 bp):
TTTTTTTTCGAATTTCTTA
Found at i:38687732 original size:8 final size:8
Alignment explanation
Indices: 38687719--38687747 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
38687709 TATATATACT
38687719 AAATAATA
1 AAATAATA
38687727 AAATAATA
1 AAATAATA
38687735 AAATAATA
1 AAATAATA
38687743 AAATA
1 AAATA
38687748 TCATTTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAATAATA
Found at i:38690925 original size:26 final size:27
Alignment explanation
Indices: 38690896--38690947 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
38690886 AAGCTGTCAG
*
38690896 TAACAATA-ATGTAGCAAAGCTACCAA
1 TAACAATATATGTAGCAAAGCCACCAA
* *
38690922 TAACAGTATATGTGGCAAAGCCACCA
1 TAACAATATATGTAGCAAAGCCACCA
38690948 TGCAGTATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.19
Consensus pattern (27 bp):
TAACAATATATGTAGCAAAGCCACCAA
Found at i:38691085 original size:27 final size:27
Alignment explanation
Indices: 38691054--38691166 Score: 138
Period size: 27 Copynumber: 4.2 Consensus size: 27
38691044 TTTTTGGGGT
* * *
38691054 ATTTTACCTTTCAGGGGTATTTCGGTC
1 ATTTTACCCTTCAGGGGTAATTCAGTC
*
38691081 ATTTTACCCTTC-GAAGGTAATTCAGTC
1 ATTTTACCCTTCAG-GGGTAATTCAGTC
* *
38691108 ACTTAACCCTTCAGGGGTAATTCAGTC
1 ATTTTACCCTTCAGGGGTAATTCAGTC
* *
38691135 ATTTTACCCTTCGGGGGTAATTCAATC
1 ATTTTACCCTTCAGGGGTAATTCAGTC
38691162 ATTTT
1 ATTTT
38691167 TCGACCTATC
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 1 0.01
27 71 0.97
28 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.39
Consensus pattern (27 bp):
ATTTTACCCTTCAGGGGTAATTCAGTC
Found at i:38693459 original size:27 final size:28
Alignment explanation
Indices: 38693429--38693490 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
38693419 TTATACAGTA
*
38693429 ACAGTAA-AGTGTGGGCCTCAGCCCATT
1 ACAGTAACAGTGTGGGCCTCAGCCCAAT
*
38693456 ACAGTAACAGTGTGGGCCTTAGCCCAAT
1 ACAGTAACAGTGTGGGCCTCAGCCCAAT
38693484 ACAGTAA
1 ACAGTAA
38693491 TAGTACAATG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 7 0.22
28 25 0.78
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.21
Consensus pattern (28 bp):
ACAGTAACAGTGTGGGCCTCAGCCCAAT
Found at i:38693862 original size:27 final size:27
Alignment explanation
Indices: 38693832--38693890 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
38693822 TATAATAGTT
* **
38693832 ATTTTACCCTTCGGGGGTAATTTGGTC
1 ATTTTACCCTTCGAGGGTAATTCAGTC
38693859 ATTTTACCCTTCGAGGGTAATTCAGTC
1 ATTTTACCCTTCGAGGGTAATTCAGTC
38693886 ATTTT
1 ATTTT
38693891 TTGACCTCTC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.19, C:0.19, G:0.20, T:0.42
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTAATTCAGTC
Found at i:38696178 original size:33 final size:32
Alignment explanation
Indices: 38696141--38696214 Score: 86
Period size: 28 Copynumber: 2.4 Consensus size: 32
38696131 ATACAACATG
38696141 CAGTAACAGTACAGTGTGGGCCTTAGCCC-A-T
1 CAGT-ACAGTACAGTGTGGGCCTTAGCCCAATT
38696172 ---TACAGTAACAGTGTGGGCCTTAGCCCAATT
1 CAGTACAGT-ACAGTGTGGGCCTTAGCCCAATT
38696202 CAGTTACAGTACA
1 CAG-TACAGTACA
38696215 ATGCAGTAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
27 5 0.14
28 20 0.56
29 1 0.03
30 1 0.03
33 3 0.08
34 6 0.17
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (32 bp):
CAGTACAGTACAGTGTGGGCCTTAGCCCAATT
Found at i:38696185 original size:28 final size:28
Alignment explanation
Indices: 38696146--38696211 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
38696136 ACATGCAGTA
38696146 ACAGTACAGTGTGGGCCTTAGCCC-ATT
1 ACAGTACAGTGTGGGCCTTAGCCCAATT
38696173 ACAGTAACAGTGTGGGCCTTAGCCCAATT
1 ACAGT-ACAGTGTGGGCCTTAGCCCAATT
38696202 -CAGTTACAGT
1 ACAG-TACAGT
38696212 ACAATGCAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
27 5 0.14
28 27 0.75
29 4 0.11
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (28 bp):
ACAGTACAGTGTGGGCCTTAGCCCAATT
Found at i:38696496 original size:16 final size:16
Alignment explanation
Indices: 38696477--38696518 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
38696467 ATACTCAGTA
38696477 ACAGTCATAGATATAT
1 ACAGTCATAGATATAT
38696493 ACAGTCATAGATATAT
1 ACAGTCATAGATATAT
38696509 ACA-TCATAGA
1 ACAGTCATAGA
38696519 GCAAATCAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 7 0.27
16 19 0.73
ACGTcount: A:0.45, C:0.14, G:0.12, T:0.29
Consensus pattern (16 bp):
ACAGTCATAGATATAT
Found at i:38696675 original size:54 final size:54
Alignment explanation
Indices: 38696565--38696691 Score: 152
Period size: 54 Copynumber: 2.4 Consensus size: 54
38696555 TATAACACTT
***
38696565 ATTTTACCCTTCGGGGGTATTTCAGTTATTTTACCTTTTTAGGGTATTTCGATC
1 ATTTTACCCTTCGGGGGTATTTCAGTTATTTTACCTTCGGAGGGTATTTCGATC
* *
38696619 ATTTTACCCTTCGGGGGTATTT-TGTTCATTTTACCCTTCGGA-GGTAATTT-GGTC
1 ATTTTACCCTTCGGGGGTATTTCAGTT-ATTTTA-CCTTCGGAGGGT-ATTTCGATC
*
38696673 ATTTTACCCTTCGAGGGTA
1 ATTTTACCCTTCGGGGGTA
38696692 ATTAAGTCAT
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
53 3 0.05
54 52 0.81
55 9 0.14
ACGTcount: A:0.17, C:0.18, G:0.20, T:0.45
Consensus pattern (54 bp):
ATTTTACCCTTCGGGGGTATTTCAGTTATTTTACCTTCGGAGGGTATTTCGATC
Found at i:38696692 original size:27 final size:27
Alignment explanation
Indices: 38696565--38696704 Score: 124
Period size: 27 Copynumber: 5.2 Consensus size: 27
38696555 TATAACACTT
* * *
38696565 ATTTTACCCTTCGGGGGT-ATTTCAGTT
1 ATTTTACCCTTCGAGGGTAATTT-GGTC
* ** *
38696592 ATTTTACCTTTTTAGGGT-ATTTCGATC
1 ATTTTACCCTTCGAGGGTAATTT-GGTC
* * *
38696619 ATTTTACCCTTCGGGGGTATTTTGTTC
1 ATTTTACCCTTCGAGGGTAATTTGGTC
38696646 ATTTTACCCTTCG-GAGGTAATTTGGTC
1 ATTTTACCCTTCGAG-GGTAATTTGGTC
**
38696673 ATTTTACCCTTCGAGGGTAATTAAGTC
1 ATTTTACCCTTCGAGGGTAATTTGGTC
38696700 ATTTT
1 ATTTT
38696705 TTGACCTCTC
Statistics
Matches: 93, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
26 1 0.01
27 88 0.95
28 4 0.04
ACGTcount: A:0.18, C:0.17, G:0.19, T:0.46
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTAATTTGGTC
Found at i:38699114 original size:28 final size:28
Alignment explanation
Indices: 38699057--38699122 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 28
38699047 CTATATAGTA
* *
38699057 ACAGT-ACAGTGTGGGCCTTAGCTCATT
1 ACAGTAACAGTGTGGGCCTTACCTCAAT
*
38699084 ACAGTAACAGTGTTGGCCTTAACCT-AAT
1 ACAGTAACAGTGTGGGCCTT-ACCTCAAT
*
38699112 ACAGGAACAGT
1 ACAGTAACAGT
38699123 ACAATGTAGT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
27 5 0.15
28 25 0.76
29 3 0.09
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (28 bp):
ACAGTAACAGTGTGGGCCTTACCTCAAT
Found at i:38699464 original size:27 final size:27
Alignment explanation
Indices: 38699434--38699585 Score: 139
Period size: 27 Copynumber: 5.6 Consensus size: 27
38699424 ATCCTACGGG
*
38699434 GGTATTTCGGCCATTTTACCCTTTGGA
1 GGTATTTCGGTCATTTTACCCTTTGGA
* * * * *
38699461 GGTATTTCGATTATTTTATCCTTAGGT
1 GGTATTTCGGTCATTTTACCCTTTGGA
* *
38699488 GGTATTTTGGTCATTTTACCC-TTCGA
1 GGTATTTCGGTCATTTTACCCTTTGGA
*
38699514 GGGTAATTCGGTCATTTTACCCTTT-GA
1 -GGTATTTCGGTCATTTTACCCTTTGGA
* * *
38699541 GGGTAATTCGATCATTTTACCCTTTGGG
1 -GGTATTTCGGTCATTTTACCCTTTGGA
*
38699569 GGTAATTT-GGTAATTTT
1 GGT-ATTTCGGTCATTTT
38699586 TTAACCTATC
Statistics
Matches: 101, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 93 0.92
28 6 0.06
ACGTcount: A:0.18, C:0.16, G:0.22, T:0.45
Consensus pattern (27 bp):
GGTATTTCGGTCATTTTACCCTTTGGA
Found at i:38699503 original size:54 final size:53
Alignment explanation
Indices: 38699432--38699575 Score: 155
Period size: 54 Copynumber: 2.7 Consensus size: 53
38699422 TTATCCTACG
* * *
38699432 GGGGTATTTCGGCCATTTTACCCTTTGGAGGTATTTCGATTATTTTATCCTTA
1 GGGGTATTTCGGTCATTTTACCCTTTGGAGGTAATTCGATCATTTTATCCTTA
* * * * *
38699485 GGTGGTATTTTGGTCATTTTACCC-TTCGAGGGTAATTCGGTCATTTTACCCTTT
1 GG-GGTATTTCGGTCATTTTACCCTTTGGA-GGTAATTCGATCATTTTATCCTTA
* * *
38699539 GAGGGTAATTCGATCATTTTACCCTTTGGGGGTAATT
1 G-GGGTATTTCGGTCATTTTACCCTTTGGAGGTAATT
38699576 TGGTAATTTT
Statistics
Matches: 74, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
53 6 0.08
54 64 0.86
55 4 0.05
ACGTcount: A:0.17, C:0.17, G:0.23, T:0.43
Consensus pattern (53 bp):
GGGGTATTTCGGTCATTTTACCCTTTGGAGGTAATTCGATCATTTTATCCTTA
Found at i:38699558 original size:81 final size:81
Alignment explanation
Indices: 38699433--38699585 Score: 209
Period size: 81 Copynumber: 1.9 Consensus size: 81
38699423 TATCCTACGG
* * * * * *
38699433 GGGTATTTCGGCCATTTTACCCTTTGGAGGTATTTCGATTATTTTATCCTTAGGTGGTATTTTGG
1 GGGTAATTCGGCCATTTTACCCTTTGGAGGTAATTCGATCATTTTACCCTTAGGGGGTAATTTGG
*
38699498 TCATTTTACCCTTCGA
66 TAATTTTACCCTTCGA
* *
38699514 GGGTAATTCGGTCATTTTACCCTTT-GAGGGTAATTCGATCATTTTACCCTTTGGGGGTAATTTG
1 GGGTAATTCGGCCATTTTACCCTTTGGA-GGTAATTCGATCATTTTACCCTTAGGGGGTAATTTG
38699578 GTAATTTT
65 GTAATTTT
38699586 TTAACCTATC
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
80 2 0.03
81 60 0.97
ACGTcount: A:0.18, C:0.16, G:0.22, T:0.44
Consensus pattern (81 bp):
GGGTAATTCGGCCATTTTACCCTTTGGAGGTAATTCGATCATTTTACCCTTAGGGGGTAATTTGG
TAATTTTACCCTTCGA
Found at i:38712326 original size:51 final size:51
Alignment explanation
Indices: 38712266--38712605 Score: 350
Period size: 51 Copynumber: 6.7 Consensus size: 51
38712256 GATGAACACG
* * ***
38712266 TGTGTAGTACTGTGTGAAGGCTACTACATGTATCGATAAATGATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAAACTTGGTCACA
* * * * * * **
38712317 TGTGTAGTACTAAGTGAAGGCTACAATGTGTACCGA-GAAGCTTTGGTCATG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAAAC-TTGGTCACA
* *
38712368 TGTGTAGTACTATGTGAAGGCTACTACGTGAATCGAT-AAATTATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAAACT-TGGTCACA
* * * *
38712419 TGTGTAGTACTAAGTGAAGGCTACTATGTGTA-CCA-AAAAGCTTTGGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAAA-C-TTGGTCACA
* * * *
38712470 TGTGTAGTACTAGGTGAAGGCTACTACGTGAACCG-TAAAACTTGATCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAAACTTGGTCACA
* * * * *
38712520 TGTGTAGTACTATGTAAAGGCTACTACGTG-AACCATAAAACTTGATCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAAACTTGGTCACA
38712570 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
38712606 ATGATAAAAG
Statistics
Matches: 238, Mismatches: 41, Indels: 20
0.80 0.14 0.07
Matches are distributed among these distances:
49 2 0.01
50 86 0.36
51 144 0.61
52 6 0.03
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (51 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAAACTTGGTCACA
Found at i:38712441 original size:102 final size:101
Alignment explanation
Indices: 38712262--38712605 Score: 469
Period size: 102 Copynumber: 3.4 Consensus size: 101
38712252 TATCGATGAA
* * * *
38712262 CACGTGTGTAGTACTGTGTGAAGGCTACTACATGTATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATTATGGTCACATGTGTAGTAC
* *
38712327 TAAGTGAAGGCTACAATGTGTACCGAGAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTGTACC-AAAAGCTTTGGT
*
38712364 CATGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATTATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATTATGGTCACATGTGTAGTAC
38712429 TAAGTGAAGGCTACTATGTGTACCAAAAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTGTACC-AAAAGCTTTGGT
* * * *
38712466 CACGTGTGTAGTACTAGGTGAAGGCTACTACGTGAACCG-TAAAACT-TGATCACATGTGTAGTA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGAT-AAATTATGGTCACATGTGTAGTA
* * * * * *
38712529 CTATGTAAAGGCTACTACGTGAACCATAAAAC-TTGAT
65 CTAAGTGAAGGCTACTATGTGTACCA-AAAGCTTTGGT
*
38712566 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGA
38712606 ATGATAAAAG
Statistics
Matches: 217, Mismatches: 22, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
100 41 0.19
101 42 0.19
102 134 0.62
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (101 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATTATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGTGTACCAAAAGCTTTGGT
Found at i:38713694 original size:19 final size:19
Alignment explanation
Indices: 38713670--38713706 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
38713660 TATATGTATT
38713670 TTTTAAATA-ATATTGATAC
1 TTTTAAA-ACATATTGATAC
38713689 TTTTAAAACATATTGATA
1 TTTTAAAACATATTGATA
38713707 ACAATTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 1 0.06
19 16 0.94
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.46
Consensus pattern (19 bp):
TTTTAAAACATATTGATAC
Found at i:38714178 original size:39 final size:39
Alignment explanation
Indices: 38714135--38714212 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
38714125 TTAGTAAAAA
*
38714135 AAAATATAAATTTGTATTAAATCGAAATCCGTTTTAACC
1 AAAATATAAATTTGTATTAAATCGAAATCCATTTTAACC
*
38714174 AAAATCTAAATTTGTATTAAATCGAAATCCATTTTAACC
1 AAAATATAAATTTGTATTAAATCGAAATCCATTTTAACC
38714213 TTGGAGGACT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.44, C:0.14, G:0.06, T:0.36
Consensus pattern (39 bp):
AAAATATAAATTTGTATTAAATCGAAATCCATTTTAACC
Found at i:38715174 original size:15 final size:15
Alignment explanation
Indices: 38715136--38715176 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
38715126 GGGCTTGGTT
*
38715136 TTGGGTTTAGGCTAG
1 TTGGGTTTGGGCTAG
38715151 TTGGGTTTGGGCTAG
1 TTGGGTTTGGGCTAG
38715166 TTGGGTTTGGG
1 TTGGGTTTGGG
38715177 TTAAAGCTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.07, C:0.05, G:0.46, T:0.41
Consensus pattern (15 bp):
TTGGGTTTGGGCTAG
Found at i:38715890 original size:142 final size:142
Alignment explanation
Indices: 38715634--38715938 Score: 486
Period size: 142 Copynumber: 2.2 Consensus size: 142
38715624 CTTGGGGAAG
* * *
38715634 TAAGATTCCTGGCTTCAATCTGATGCAATCTACTCTACTGTAACTTCAGAGAGATAAGGTCCTTT
1 TAAGATTTCTGGCTTCAATCTGATGCAATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTT
*
38715699 ATTTTAATCCACTGCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTACTCCGCGGTA
66 ATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTACTCCGCGGTA
38715764 ATCTCAAGGAGA
131 ATCTCAAGGAGA
* *
38715776 TAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTATAACTTCAGAGAGATGAGATCCTTT
1 TAAGATTTCTGGCTTCAATCTGATGCAATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTT
* * * *
38715841 GTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTATTCCGCTGTA
66 ATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTACTCCGCGGTA
*
38715906 ATCTCAGGGAGA
131 ATCTCAAGGAGA
* *
38715918 TGAGATTTCT-GCTTCAGTCTG
1 TAAGATTTCTGGCTTCAATCTG
38715939 CCCCACTGTG
Statistics
Matches: 150, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
141 10 0.07
142 140 0.93
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (142 bp):
TAAGATTTCTGGCTTCAATCTGATGCAATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTT
ATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTACTCCGCGGTA
ATCTCAAGGAGA
Found at i:38739284 original size:17 final size:16
Alignment explanation
Indices: 38739259--38739293 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
38739249 AACCCTAGTT
* *
38739259 TTTCCCTTTTCTTTTC
1 TTTCCCCTTTCCTTTC
38739275 TTTCCCCTTTCCTTTC
1 TTTCCCCTTTCCTTTC
38739291 TTT
1 TTT
38739294 TTTTTCGTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTCCCCTTTCCTTTC
Found at i:38739546 original size:22 final size:21
Alignment explanation
Indices: 38739521--38739582 Score: 67
Period size: 19 Copynumber: 3.0 Consensus size: 21
38739511 TTTATTTAAG
*
38739521 ATATAATAATATAATATAATT
1 ATATAATAATATAATATAATA
38739542 A-AT-ATAATATAATATAAT-
1 ATATAATAATATAATATAATA
* *
38739560 ATATAATAAAATAGTATATATA
1 ATATAATAATATAATATA-ATA
38739582 A
1 A
38739583 AACATAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
18 1 0.03
19 17 0.49
20 13 0.37
21 3 0.09
22 1 0.03
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.39
Consensus pattern (21 bp):
ATATAATAATATAATATAATA
Found at i:38739563 original size:17 final size:17
Alignment explanation
Indices: 38739521--38739582 Score: 72
Period size: 17 Copynumber: 3.5 Consensus size: 17
38739511 TTTATTTAAG
38739521 ATATAATAATATAATATA
1 ATAT-ATAATATAATATA
38739539 ATTAATATAATATAATATA
1 A-T-ATATAATATAATATA
*
38739558 ATATATAATAAAATAGT-
1 ATATATAATATAATA-TA
38739575 ATATATAA
1 ATATATAA
38739583 AACATAAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
17 20 0.50
18 3 0.08
19 15 0.38
20 2 0.05
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.39
Consensus pattern (17 bp):
ATATATAATATAATATA
Found at i:38739572 original size:5 final size:5
Alignment explanation
Indices: 38739526--38739562 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
38739516 TTAAGATATA
38739526 ATAAT ATAAT ATAAT -TAAT ATAAT ATAAT ATAAT ATA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA
38739563 TAATAAAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.13
5 27 0.87
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATAAT
Found at i:38746765 original size:15 final size:16
Alignment explanation
Indices: 38746745--38746775 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
38746735 TATAAGCTCG
38746745 ACAAATAA-AATAAAA
1 ACAAATAATAATAAAA
38746760 ACAAATAATAATAAAA
1 ACAAATAATAATAAAA
38746776 GATAGTTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.16
Consensus pattern (16 bp):
ACAAATAATAATAAAA
Found at i:38747351 original size:10 final size:9
Alignment explanation
Indices: 38747333--38747374 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
38747323 CGTGTGACAC
38747333 TTTTTTTTA
1 TTTTTTTTA
38747342 TTTATTTTTA
1 TTT-TTTTTA
38747352 -TTTTTTTA
1 TTTTTTTTA
* *
38747360 TATTTTATA
1 TTTTTTTTA
38747369 TTTTTT
1 TTTTTT
38747375 AATTAATAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
8 6 0.21
9 16 0.57
10 6 0.21
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:38747375 original size:16 final size:14
Alignment explanation
Indices: 38747333--38747375 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
38747323 CGTGTGACAC
*
38747333 TTTTT-TTTATTTA
1 TTTTTATTTTTTTA
38747346 TTTTTATTTTTTTA
1 TTTTTATTTTTTTA
38747360 TATTTTATATTTTTTA
1 T-TTTTAT-TTTTTTA
38747376 ATTAATAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 5 0.19
14 8 0.31
15 6 0.23
16 7 0.27
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTTTATTTTTTTA
Found at i:38756084 original size:41 final size:41
Alignment explanation
Indices: 38756027--38756111 Score: 143
Period size: 41 Copynumber: 2.1 Consensus size: 41
38756017 ATCCAATGAG
* *
38756027 GTACTAAGTGGGCAATTGTCACTAACTGTAACTGCACCGGT
1 GTACTAAGCGGGCAATTGTCACTAACTGTAACTGCACCGAT
*
38756068 GTACTAAGCGGGCAATTGTCCCTAACTGTAACTGCACCGAT
1 GTACTAAGCGGGCAATTGTCACTAACTGTAACTGCACCGAT
38756109 GTA
1 GTA
38756112 GTGGGGTGCA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (41 bp):
GTACTAAGCGGGCAATTGTCACTAACTGTAACTGCACCGAT
Found at i:38756754 original size:14 final size:15
Alignment explanation
Indices: 38756726--38756760 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
38756716 AATTTTAAAG
*
38756726 AAAAATGAATGTTGT
1 AAAAATGAATATTGT
38756741 AAAAATGAA-ATTGT
1 AAAAATGAATATTGT
38756755 AAAAAT
1 AAAAAT
38756761 ATTATTTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.53
15 9 0.47
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (15 bp):
AAAAATGAATATTGT
Found at i:38756841 original size:17 final size:19
Alignment explanation
Indices: 38756815--38756850 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
38756805 TAACTCTCTC
38756815 TTTTTCAGTTTTA-TTTTA
1 TTTTTCAGTTTTACTTTTA
38756833 TTTTT-AGTTTTACTTTTA
1 TTTTTCAGTTTTACTTTTA
38756851 AAATTTATGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.72
Consensus pattern (19 bp):
TTTTTCAGTTTTACTTTTA
Found at i:38761260 original size:20 final size:20
Alignment explanation
Indices: 38761177--38761264 Score: 63
Period size: 20 Copynumber: 4.4 Consensus size: 20
38761167 AAGTCTAGCC
* *
38761177 ACCAATATTGCAAACAAGCT
1 ACCAGTATTGCAGACAAGCT
* * * *
38761197 GCCAGTATTGTAGATAAACT
1 ACCAGTATTGCAGACAAGCT
* * *
38761217 GCCAGTATTG-TGATCTAA-CC
1 ACCAGTATTGCAGA-C-AAGCT
38761237 ACCAGTATTGCAGACAAGCT
1 ACCAGTATTGCAGACAAGCT
38761257 ACCAGTAT
1 ACCAGTAT
38761265 AGTGGATGTA
Statistics
Matches: 52, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
19 4 0.08
20 44 0.85
21 4 0.08
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (20 bp):
ACCAGTATTGCAGACAAGCT
Found at i:38763779 original size:17 final size:17
Alignment explanation
Indices: 38763759--38763803 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
38763749 GTCTATTAGT
*
38763759 CGATACTGTCTGCCAGG
1 CGATACAGTCTGCCAGG
* **
38763776 CGATACAGTCCGTAAGG
1 CGATACAGTCTGCCAGG
38763793 CGATACAGTCT
1 CGATACAGTCT
38763804 ACCATACGAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (17 bp):
CGATACAGTCTGCCAGG
Found at i:38772449 original size:44 final size:43
Alignment explanation
Indices: 38772335--38772486 Score: 198
Period size: 43 Copynumber: 3.5 Consensus size: 43
38772325 AAAAAACGTT
* *
38772335 GCTATAGAACATGACCTTTAGCGGCGCTTTTATCACAAACGCC
1 GCTAAAGAACATGATCTTTAGCGGCGCTTTTATCACAAACGCC
*
38772378 GCTAAAGAACATGATCTTTAGCGGCGCTTTTATCACAAATGCC
1 GCTAAAGAACATGATCTTTAGCGGCGCTTTTATCACAAACGCC
* * * *
38772421 GCTAAAATAACATGATCTTTAGCAGCGC-TTTACCCACAAACGCG
1 GCT-AAAGAACATGATCTTTAGCGGCGCTTTTA-TCACAAACGCC
* *
38772465 GCTAAAGATCATGACCTTTAGC
1 GCTAAAGAACATGATCTTTAGC
38772487 TGCGTTTATA
Statistics
Matches: 96, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
43 63 0.66
44 33 0.34
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (43 bp):
GCTAAAGAACATGATCTTTAGCGGCGCTTTTATCACAAACGCC
Found at i:38789444 original size:31 final size:29
Alignment explanation
Indices: 38789394--38789452 Score: 73
Period size: 31 Copynumber: 2.0 Consensus size: 29
38789384 TAGCAAGAAT
*
38789394 GAAAAAGTAAAATCCAAAACCTAAGAGAAAG
1 GAAAAACTAAAATCCAAAA-CTAA-AGAAAG
* *
38789425 GAAAAACTAAATTCTAAAACTAAAGAAA
1 GAAAAACTAAAATCCAAAACTAAAGAAA
38789453 AAATTATACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 5 0.20
30 4 0.16
31 16 0.64
ACGTcount: A:0.63, C:0.12, G:0.12, T:0.14
Consensus pattern (29 bp):
GAAAAACTAAAATCCAAAACTAAAGAAAG
Found at i:38790864 original size:7 final size:7
Alignment explanation
Indices: 38790852--38790882 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
38790842 TCGTTCCCTT
38790852 TTTTCTC
1 TTTTCTC
38790859 TTTTCTC
1 TTTTCTC
*
38790866 TTTTCTA
1 TTTTCTC
38790873 TTTTCTC
1 TTTTCTC
38790880 TTT
1 TTT
38790883 CCTTCTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.03, C:0.23, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTTCTC
Found at i:38795418 original size:50 final size:50
Alignment explanation
Indices: 38795353--38795528 Score: 221
Period size: 50 Copynumber: 3.5 Consensus size: 50
38795343 TTATGCATTT
* * *
38795353 AATAAAGTCAAGCATTATGTAACTTTCATGTTAGTTAAGTATGCATCATA
1 AATAATGTCATGCATTATGTAACTCTCATGTTAGTTAAGTATGCATCATA
* *
38795403 AATAATGACATGCATTATGTAACGCTCATGTTAGTTAAG-ATTGCATCATA
1 AATAATGTCATGCATTATGTAACTCTCATGTTAGTTAAGTA-TGCATCATA
* * * *
38795453 AATTATGTCATGCATTATGTAACTCCCATGTTAGTTAAAGTATGCATCTTTT
1 AATAATGTCATGCATTATGTAACTCTCATGTTAGTT-AAGTATGCATC-ATA
*
38795505 AATAAAGTCATGCATTA-GTAACTC
1 AATAATGTCATGCATTATGTAACTC
38795529 ATTTGTTCAT
Statistics
Matches: 109, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 75 0.69
51 16 0.15
52 17 0.16
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.36
Consensus pattern (50 bp):
AATAATGTCATGCATTATGTAACTCTCATGTTAGTTAAGTATGCATCATA
Found at i:38795564 original size:100 final size:99
Alignment explanation
Indices: 38795351--38795568 Score: 221
Period size: 100 Copynumber: 2.2 Consensus size: 99
38795341 TGTTATGCAT
* ** *
38795351 TTAA-TAAAGTCAAGCATTATGTAACTTTCATGTTAGTTAAGTATGCATCATAAATAATGACATG
1 TTAATTAAA-TCATGCATTATGTAACTCCCATGTTAGTTAAGTATGCATCATAAATAAAGACATG
*
38795415 CATTATGTAACGCTCATGTTAGTTAAGATTGCATCA
65 CATTATGTAAC-CTCATGTTAGTTAAGATTACATCA
* ** * * *
38795451 TAAATTATGTCATGCATTATGTAACTCCCATGTTAGTTAAAGTATGCATCTTTTAATAAAGTCAT
1 TTAATTAAATCATGCATTATGTAACTCCCATGTTAGTT-AAGTATGCATC-ATAAATAAAGACAT
* *
38795516 GCATTA-GTAA-CTCATTTGTTCA-TTTAGTTTACATC-
64 GCATTATGTAACCTCA--TGTT-AGTTAAGATTACATCA
38795551 TTAATTAAATCATGCATT
1 TTAATTAAATCATGCATT
38795569 TAAGCATCTT
Statistics
Matches: 96, Mismatches: 16, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
99 4 0.04
100 44 0.46
101 31 0.32
102 17 0.18
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (99 bp):
TTAATTAAATCATGCATTATGTAACTCCCATGTTAGTTAAGTATGCATCATAAATAAAGACATGC
ATTATGTAACCTCATGTTAGTTAAGATTACATCA
Found at i:38799423 original size:12 final size:12
Alignment explanation
Indices: 38799406--38799432 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
38799396 AATATGGTGT
38799406 TTTGGTTTAAAA
1 TTTGGTTTAAAA
38799418 TTTGGTTTAAAA
1 TTTGGTTTAAAA
38799430 TTT
1 TTT
38799433 CAAATAAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.56
Consensus pattern (12 bp):
TTTGGTTTAAAA
Found at i:38807377 original size:24 final size:22
Alignment explanation
Indices: 38807362--38807409 Score: 73
Period size: 20 Copynumber: 2.3 Consensus size: 22
38807352 TCTGATCTCA
38807362 CCTTTGTGGCACATTCTATTAG
1 CCTTTGTGGCACATTCTATTAG
*
38807384 CCTTTGTGG--CATTCTACTAG
1 CCTTTGTGGCACATTCTATTAG
38807404 CCTTTG
1 CCTTTG
38807410 GGGTGTGCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 16 0.64
22 9 0.36
ACGTcount: A:0.15, C:0.25, G:0.19, T:0.42
Consensus pattern (22 bp):
CCTTTGTGGCACATTCTATTAG
Found at i:38820497 original size:17 final size:17
Alignment explanation
Indices: 38820475--38820507 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
38820465 CCTTCCTTTT
*
38820475 TTCTTTTTGTTCTTCTG
1 TTCTTTTTCTTCTTCTG
38820492 TTCTTTTTCTTCTTCT
1 TTCTTTTTCTTCTTCT
38820508 TTTTTTGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.00, C:0.21, G:0.06, T:0.73
Consensus pattern (17 bp):
TTCTTTTTCTTCTTCTG
Found at i:38824322 original size:41 final size:41
Alignment explanation
Indices: 38824265--38824394 Score: 190
Period size: 41 Copynumber: 3.2 Consensus size: 41
38824255 AATATTGTTT
*
38824265 AATTGCACATACATGCCCTTATTTGTACTTTGGTACCCCTG
1 AATTGCACATACATGCCCTTATTTGTACTTCGGTACCCCTG
* * * *
38824306 AATTGCACATGCATGCCCCTATTTGTAATTCAGTACCCCTG
1 AATTGCACATACATGCCCTTATTTGTACTTCGGTACCCCTG
* *
38824347 AATTGCACATACGTGCCCTTGTTTGTACTTCGGTACCCCTG
1 AATTGCACATACATGCCCTTATTTGTACTTCGGTACCCCTG
38824388 AA-TGCAC
1 AATTGCAC
38824395 TTTTGTACCC
Statistics
Matches: 78, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
40 5 0.06
41 73 0.94
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.33
Consensus pattern (41 bp):
AATTGCACATACATGCCCTTATTTGTACTTCGGTACCCCTG
Found at i:38824324 original size:21 final size:22
Alignment explanation
Indices: 38824297--38824356 Score: 63
Period size: 20 Copynumber: 2.9 Consensus size: 22
38824287 TTGTACTTTG
38824297 GTACCCCTGAATTGCACATGCA
1 GTACCCCTGAATTGCACATGCA
* * * *
38824319 -TGCCCCT-ATTTGTA-ATTCA
1 GTACCCCTGAATTGCACATGCA
38824338 GTACCCCTGAATTGCACAT
1 GTACCCCTGAATTGCACAT
38824357 ACGTGCCCTT
Statistics
Matches: 28, Mismatches: 7, Indels: 6
0.68 0.17 0.15
Matches are distributed among these distances:
19 4 0.14
20 11 0.39
21 11 0.39
22 2 0.07
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.30
Consensus pattern (22 bp):
GTACCCCTGAATTGCACATGCA
Found at i:38828963 original size:19 final size:19
Alignment explanation
Indices: 38828941--38828984 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
38828931 AAAATTAGAT
*
38828941 AAAATAAGGCGAATTATAA
1 AAAATAAGGCAAATTATAA
* *
38828960 AAAATTAGGTAAATTATAA
1 AAAATAAGGCAAATTATAA
38828979 AAAATA
1 AAAATA
38828985 TTATTTTCAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.61, C:0.02, G:0.11, T:0.25
Consensus pattern (19 bp):
AAAATAAGGCAAATTATAA
Found at i:38829957 original size:16 final size:16
Alignment explanation
Indices: 38829936--38830003 Score: 100
Period size: 16 Copynumber: 4.2 Consensus size: 16
38829926 TTTGGTTCGC
*
38829936 TGTATTGAATTAGAGG
1 TGTATTGGATTAGAGG
38829952 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
38829968 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* * *
38829984 TGTAATGGAATAGATG
1 TGTATTGGATTAGAGG
38830000 TGTA
1 TGTA
38830004 ATAGCAAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.29, C:0.00, G:0.34, T:0.37
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:38830073 original size:44 final size:45
Alignment explanation
Indices: 38829984--38830074 Score: 130
Period size: 45 Copynumber: 2.0 Consensus size: 45
38829974 GGATTAGAGG
* *
38829984 TGTAATGGAATAGATGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAATCAACTGTTTGGTTGAA
* **
38830029 TGTAATGGAATAGAGGCGTAATAG-TAATCATGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAATCAACTGTTTGGTTGAA
38830073 TG
1 TG
38830075 GAATAGAGGT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 19 0.46
45 22 0.54
ACGTcount: A:0.33, C:0.05, G:0.27, T:0.34
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCAAATCAACTGTTTGGTTGAA
Found at i:38830089 original size:39 final size:43
Alignment explanation
Indices: 38829984--38830093 Score: 129
Period size: 45 Copynumber: 2.6 Consensus size: 43
38829974 GGATTAGAGG
*
38829984 TGTAATGGAATAGATGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT--A
* * **
38830029 TGTAATGGAATAGAGGCGTAATAG-TAATCATGTGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
38830069 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
38830094 TAATGGAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
39 20 0.35
40 2 0.04
43 1 0.02
44 12 0.21
45 22 0.39
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.32
Consensus pattern (43 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
Found at i:38830247 original size:25 final size:25
Alignment explanation
Indices: 38830215--38830269 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
38830205 TAATTTAATC
*
38830215 ATAT-TTAAACATAATTATTATT-AA
1 ATATATTAAACAT-ATTATAATTAAA
*
38830239 ATATATTAAATATATTATAATTAAA
1 ATATATTAAACATATTATAATTAAA
38830264 ATATAT
1 ATATAT
38830270 AATTTAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
ATATATTAAACATATTATAATTAAA
Found at i:38830576 original size:25 final size:26
Alignment explanation
Indices: 38830537--38830587 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
38830527 TATATGTAAT
*
38830537 ATTATTAAAATAATATTTTTATTTTA
1 ATTATTAAAATAATATTTTTAATTTA
*
38830563 ATTATTTAAA-AATATTTTTAATTTA
1 ATTATTAAAATAATATTTTTAATTTA
38830588 TGCGATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (26 bp):
ATTATTAAAATAATATTTTTAATTTA
Found at i:38830581 original size:26 final size:26
Alignment explanation
Indices: 38830537--38830586 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
38830527 TATATGTAAT
*
38830537 ATTATTAAAATAATATTTTTATTTTA
1 ATTATTAAAATAATATTTTAATTTTA
*
38830563 ATTATTTAAA-AATATTTTTAATTT
1 ATTATTAAAATAATA-TTTTAATTT
38830587 ATGCGATGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (26 bp):
ATTATTAAAATAATATTTTAATTTTA
Found at i:38835603 original size:23 final size:24
Alignment explanation
Indices: 38835565--38835609 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
38835555 TCATTATGCC
*
38835565 TTATTTTTAAATTAATGGAAGTAA
1 TTATTTTTAAATTAATGCAAGTAA
*
38835589 TTATTTTTATA-TAATGCAAGT
1 TTATTTTTAAATTAATGCAAGT
38835610 GATTCTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 9 0.47
24 10 0.53
ACGTcount: A:0.38, C:0.02, G:0.11, T:0.49
Consensus pattern (24 bp):
TTATTTTTAAATTAATGCAAGTAA
Found at i:38835833 original size:106 final size:106
Alignment explanation
Indices: 38835690--38835899 Score: 332
Period size: 106 Copynumber: 2.0 Consensus size: 106
38835680 CATCTATGGT
* * *
38835690 CCCTTCCCAATTATTTAATTATATTTCAGCAAATTTTTTCATGTTATTGATACATAATTTTGGTA
1 CCCTTCCCAATTATTTAACTATATTTCAGCAAATTTTTTCATATTATTGATACACAATTTTGGTA
*
38835755 ATTTTTTACCCTC-AACCCTAAACTCGTTCAAGGTTCAAGTC
66 ATTTTTTACCC-CAAACCCTAAACTCATTCAAGGTTCAAGTC
* * * *
38835796 CCCTTTCCAATTATTTAACTATATTTCAGTAATTTTTTTCATATTATTTATACACAATTTTGGTA
1 CCCTTCCCAATTATTTAACTATATTTCAGCAAATTTTTTCATATTATTGATACACAATTTTGGTA
38835861 ATTTTTTACCCCAAACCCTAAACTCATTCAAGGTTCAAG
66 ATTTTTTACCCCAAACCCTAAACTCATTCAAGGTTCAAG
38835900 GTTTAAGGTT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
105 1 0.01
106 94 0.99
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.43
Consensus pattern (106 bp):
CCCTTCCCAATTATTTAACTATATTTCAGCAAATTTTTTCATATTATTGATACACAATTTTGGTA
ATTTTTTACCCCAAACCCTAAACTCATTCAAGGTTCAAGTC
Found at i:38836283 original size:20 final size:20
Alignment explanation
Indices: 38836258--38836306 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 20
38836248 TGTTTATAAA
38836258 TTAAAATATATTTAAT-AA-TT
1 TTAAAAT-T-TTTAATGAAGTT
38836278 TTAAAATTTTTAATGAAGTTT
1 TTAAAATTTTTAATGAAG-TT
38836299 TTAAAATT
1 TTAAAATT
38836307 CCTTAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
18 6 0.23
19 3 0.12
20 7 0.27
21 10 0.38
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (20 bp):
TTAAAATTTTTAATGAAGTT
Found at i:38837503 original size:19 final size:19
Alignment explanation
Indices: 38837411--38837496 Score: 84
Period size: 19 Copynumber: 4.3 Consensus size: 19
38837401 TCTTTAGAAT
* *
38837411 TTTTTAAAATTTATTTTAA
1 TTTTTAAAAATTATTTGAA
38837430 TTTTTAAAAAATATAATTTTGGAA
1 TTTTT-AAAAAT-T-A-TTT-GAA
*
38837454 TTTTTATAAA-TATTTTGAA
1 TTTTTAAAAATTA-TTTGAA
38837473 TTTTTAAAAATTATTTGAA
1 TTTTTAAAAATTATTTGAA
38837492 TTTTT
1 TTTTT
38837497 TTTAATTTTC
Statistics
Matches: 57, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
19 28 0.49
20 12 0.21
21 2 0.04
22 1 0.02
23 7 0.12
24 7 0.12
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (19 bp):
TTTTTAAAAATTATTTGAA
Found at i:38838679 original size:17 final size:19
Alignment explanation
Indices: 38838641--38838688 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
38838631 TTTGTAGATT
38838641 TTTTTTATATTTATTCTAA
1 TTTTTTATATTTATTCTAA
*
38838660 TTTTTTA-ATTTAATT-TAT
1 TTTTTTATATTT-ATTCTAA
38838678 TTTTTTATATT
1 TTTTTTATATT
38838689 GAGTTTATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 13 0.50
19 13 0.50
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTTTTATATTTATTCTAA
Found at i:38839409 original size:44 final size:43
Alignment explanation
Indices: 38839300--38839459 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 43
38839290 GGTCATGTTC
* * ** *
38839300 TTTAGCGGCGCTTC--CACAAAAACGCAGCTAAAGGTCATGAAT
1 TTTAGCGGCGCTTCTTC-CACAAACGCCGCTAAAGAACATGACT
* * * *
38839342 TTTAGTGGTGCTTTTTTCACAAACGCCGCTAAAGAACATGACTT
1 TTTAGCGGCGCTTCTTCCACAAACGCCGCTAAAGAACATGAC-T
*
38839386 TTTAGCGGCGCTTC-TCCTACAAACGCCGCTATAGAACATGACT
1 TTTAGCGGCGCTTCTTCC-ACAAACGCCGCTAAAGAACATGACT
** *
38839429 TTTAGCGTTGCTTCTTCCACAAACGCTGCTA
1 TTTAGCGGCGCTTCTTCCACAAACGCCGCTA
38839460 TTGTTTTGGT
Statistics
Matches: 96, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
42 11 0.11
43 47 0.49
44 38 0.40
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.29
Consensus pattern (43 bp):
TTTAGCGGCGCTTCTTCCACAAACGCCGCTAAAGAACATGACT
Found at i:38839432 original size:87 final size:86
Alignment explanation
Indices: 38839300--38839459 Score: 196
Period size: 87 Copynumber: 1.8 Consensus size: 86
38839290 GGTCATGTTC
** * * *
38839300 TTTAGCGGCGCTTCCACAAAAACGCAGCTAAAGGTCATGAATTTTAGTGGTGCTTTTTTCACAAA
1 TTTAGCGGCGCTTCCACAAAAACGCAGCTAAAGAACATGAATTTTAGCGGTGCTTCTTCCACAAA
38839365 CGCCGCTAAAGAACATGACTT
66 CGCCGCTAAAGAACATGACTT
* * * * *
38839386 TTTAGCGGCGCTTCTC-CTACAAACGCCGCTATAGAACATGACTTTTAGCGTTGCTTCTTCCACA
1 TTTAGCGGCGCTTC-CAC-AAAAACGCAGCTAAAGAACATGAATTTTAGCGGTGCTTCTTCCACA
*
38839450 AACGCTGCTA
64 AACGCCGCTA
38839460 TTGTTTTGGT
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
86 15 0.25
87 46 0.75
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.29
Consensus pattern (86 bp):
TTTAGCGGCGCTTCCACAAAAACGCAGCTAAAGAACATGAATTTTAGCGGTGCTTCTTCCACAAA
CGCCGCTAAAGAACATGACTT
Found at i:38839460 original size:43 final size:43
Alignment explanation
Indices: 38839335--38839460 Score: 155
Period size: 44 Copynumber: 2.9 Consensus size: 43
38839325 AGCTAAAGGT
* * * * *
38839335 CATGAATTTTAGTGGTGCTTTTTTCACAAACGCCGCTAAAGAA
1 CATGACTTTTAGCGGTGCTTCTTCCACAAACGCCGCTATAGAA
*
38839378 CATGACTTTTTAGCGGCGCTTC-TCCTACAAACGCCGCTATAGAA
1 CATGAC-TTTTAGCGGTGCTTCTTCC-ACAAACGCCGCTATAGAA
* *
38839422 CATGACTTTTAGCGTTGCTTCTTCCACAAACGCTGCTAT
1 CATGACTTTTAGCGGTGCTTCTTCCACAAACGCCGCTAT
38839461 TGTTTTGGTG
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
43 33 0.46
44 38 0.54
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.32
Consensus pattern (43 bp):
CATGACTTTTAGCGGTGCTTCTTCCACAAACGCCGCTATAGAA
Found at i:38839937 original size:66 final size:66
Alignment explanation
Indices: 38839828--38839963 Score: 209
Period size: 66 Copynumber: 2.1 Consensus size: 66
38839818 CTCGCTGCAG
* * * *
38839828 CCTCTGCTTCTCTTGATGTCGCATCTGCTTTAAGTTGTTGCTGGAGTTCTTCATATTTCTTTTGA
1 CCTCTGCTTCTCTCGATGCCGCATCTGCTTTAAGTTGTAGCTGGAGTTCTTCATATTTCCTTTGA
38839893 A
66 A
* * *
38839894 CCTCTGCTTCTCTCGCTGCCGCCTCTGCTTTAAGTTGTAGCTGGAGTTCTTCATATTTCCTTTGG
1 CCTCTGCTTCTCTCGATGCCGCATCTGCTTTAAGTTGTAGCTGGAGTTCTTCATATTTCCTTTGA
38839959 A
66 A
38839960 CCTC
1 CCTC
38839964 AACTGTGGTC
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.12, C:0.26, G:0.18, T:0.43
Consensus pattern (66 bp):
CCTCTGCTTCTCTCGATGCCGCATCTGCTTTAAGTTGTAGCTGGAGTTCTTCATATTTCCTTTGA
A
Found at i:38845379 original size:9 final size:9
Alignment explanation
Indices: 38845357--38845574 Score: 112
Period size: 9 Copynumber: 25.3 Consensus size: 9
38845347 TCTGTATTAA
*
38845357 GTAAATTAT
1 GTAAGTTAT
38845366 GTAAGTTAT
1 GTAAGTTAT
*
38845375 GTAAGTTAC
1 GTAAGTTAT
38845384 GT-A-TTAT
1 GTAAGTTAT
*
38845391 GTATGTTAT
1 GTAAGTTAT
*
38845400 GTAAGTTGT
1 GTAAGTTAT
*
38845409 GT-AG-AAT
1 GTAAGTTAT
*
38845416 GTAAGCTAT
1 GTAAGTTAT
38845425 GTAAGTTAT
1 GTAAGTTAT
*
38845434 GTGAGTTA-
1 GTAAGTTAT
38845442 -T-A--TAT
1 GTAAGTTAT
38845447 GTAAGTTAT
1 GTAAGTTAT
*
38845456 GTATA-ATAT
1 GTA-AGTTAT
38845465 -TAA-TTAAT
1 GTAAGTT-AT
* *
38845473 CGGCCAAGTTGT
1 --G-TAAGTTAT
*
38845485 G-AA-TAAT
1 GTAAGTTAT
38845492 GTAAGTTAT
1 GTAAGTTAT
*
38845501 GAAAGTTAT
1 GTAAGTTAT
38845510 GT-A-TTAT
1 GTAAGTTAT
38845517 GTAAGTTAT
1 GTAAGTTAT
*
38845526 TTAAGTTAT
1 GTAAGTTAT
*
38845535 GTAATAAGTTGT
1 G---TAAGTTAT
38845547 GT-A-TTAT
1 GTAAGTTAT
38845554 GTAAGTTAT
1 GTAAGTTAT
38845563 GTAAGTTAT
1 GTAAGTTAT
38845572 GTA
1 GTA
38845575 TTATGAAATT
Statistics
Matches: 160, Mismatches: 24, Indels: 50
0.68 0.10 0.21
Matches are distributed among these distances:
4 2 0.01
6 2 0.01
7 26 0.16
8 17 0.11
9 98 0.61
10 2 0.01
12 11 0.07
13 2 0.01
ACGTcount: A:0.34, C:0.02, G:0.21, T:0.43
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:38845389 original size:25 final size:25
Alignment explanation
Indices: 38845361--38845432 Score: 90
Period size: 25 Copynumber: 2.9 Consensus size: 25
38845351 TATTAAGTAA
38845361 ATTATGTAAGTTATGTAAGTTACGT
1 ATTATGTAAGTTATGTAAGTTACGT
* **
38845386 ATTATGTATGTTATGTAAGTTGTGT
1 ATTATGTAAGTTATGTAAGTTACGT
** *
38845411 AGAATGTAAGCTATGTAAGTTA
1 ATTATGTAAGTTATGTAAGTTA
38845433 TGTGAGTTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.32, C:0.03, G:0.22, T:0.43
Consensus pattern (25 bp):
ATTATGTAAGTTATGTAAGTTACGT
Found at i:38845506 original size:25 final size:25
Alignment explanation
Indices: 38845478--38845541 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
38845468 TTAATCGGCC
*
38845478 AAGTTGTGAATAATGTAAGTTATGA
1 AAGTTATGAATAATGTAAGTTATGA
* * **
38845503 AAGTTATGTATTATGTAAGTTATTT
1 AAGTTATGAATAATGTAAGTTATGA
38845528 AAGTTATGTAATAA
1 AAGTTATG-AATAA
38845542 GTTGTGTATT
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
25 28 0.90
26 3 0.10
ACGTcount: A:0.39, C:0.00, G:0.19, T:0.42
Consensus pattern (25 bp):
AAGTTATGAATAATGTAAGTTATGA
Found at i:38845550 original size:37 final size:37
Alignment explanation
Indices: 38845490--38845574 Score: 131
Period size: 37 Copynumber: 2.4 Consensus size: 37
38845480 GTTGTGAATA
38845490 ATGTAAGTTATG--A-AAGTTATGTATTATGTAAGTT
1 ATGTAAGTTATGTAATAAGTTATGTATTATGTAAGTT
* *
38845524 ATTTAAGTTATGTAATAAGTTGTGTATTATGTAAGTT
1 ATGTAAGTTATGTAATAAGTTATGTATTATGTAAGTT
38845561 ATGTAAGTTATGTA
1 ATGTAAGTTATGTA
38845575 TTATGAAATT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
34 11 0.24
36 1 0.02
37 33 0.73
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46
Consensus pattern (37 bp):
ATGTAAGTTATGTAATAAGTTATGTATTATGTAAGTT
Found at i:38845579 original size:16 final size:16
Alignment explanation
Indices: 38845497--38845565 Score: 66
Period size: 16 Copynumber: 4.0 Consensus size: 16
38845487 ATAATGTAAG
*
38845497 TTATGAAAGTTATGTA
1 TTATGTAAGTTATGTA
*
38845513 TTATGTAAGTTATTTAA
1 TTATGTAAGTTATGT-A
*
38845530 GTTATGTAATAAGTTGTGTA
1 -TTATG---TAAGTTATGTA
38845550 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
38845566 AGTTATGTAT
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
16 23 0.53
17 1 0.02
18 5 0.12
19 5 0.12
20 1 0.02
21 8 0.19
ACGTcount: A:0.33, C:0.00, G:0.19, T:0.48
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:38845737 original size:30 final size:30
Alignment explanation
Indices: 38845647--38845738 Score: 157
Period size: 30 Copynumber: 3.1 Consensus size: 30
38845637 AAATTTTATG
*
38845647 TTAATATTATATAAGTTATGTAATGAGAAA
1 TTAATATTATATAAGTTATGTAATTAGAAA
*
38845677 TTAATATTATATAAGTTATGTTATTAGAAA
1 TTAATATTATATAAGTTATGTAATTAGAAA
*
38845707 TTAATATTATATAAGTTATGTAATTCGAAA
1 TTAATATTATATAAGTTATGTAATTAGAAA
38845737 TT
1 TT
38845739 TTATCTTAAT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 58 1.00
ACGTcount: A:0.43, C:0.01, G:0.11, T:0.45
Consensus pattern (30 bp):
TTAATATTATATAAGTTATGTAATTAGAAA
Found at i:38845764 original size:20 final size:20
Alignment explanation
Indices: 38845739--38845839 Score: 129
Period size: 20 Copynumber: 5.2 Consensus size: 20
38845729 ATTCGAAATT
38845739 TTATCTTAATATTATATAAG
1 TTATCTTAATATTATATAAG
38845759 TTATCTTAATATTATATAAG
1 TTATCTTAATATTATATAAG
* * *
38845779 TTAT-GT-A-ATTAGA-AATT
1 TTATCTTAATATTATATAA-G
*
38845796 TTATCTTAATATTGTATAAG
1 TTATCTTAATATTATATAAG
38845816 TTATCTTAATATTATATAAG
1 TTATCTTAATATTATATAAG
38845836 TTAT
1 TTAT
38845840 GTAATTAGAA
Statistics
Matches: 68, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
16 2 0.03
17 9 0.13
18 2 0.03
19 2 0.03
20 51 0.75
21 2 0.03
ACGTcount: A:0.39, C:0.04, G:0.07, T:0.50
Consensus pattern (20 bp):
TTATCTTAATATTATATAAG
Found at i:38845794 original size:57 final size:56
Alignment explanation
Indices: 38845585--38845892 Score: 301
Period size: 57 Copynumber: 5.4 Consensus size: 56
38845575 TTATGAAATT
* * * *
38845585 TTATCTTAATATTATATAAGTTATCTAAAATTAGAAA-TTGATGTGT-A-ATTAGA-AA
1 TTATCTTAATATTATATAAGTTATGT--AATTAGAAATTTTATCT-TAATATTATATAA
* * * * * *
38845640 TTTTATGTTAATATTATATAAGTTATGTAATGAGAAA-TTAATATTATATAAGTTATGTTA
1 --TTATCTTAATATTATATAAGTTATGTAATTAGAAATTTTATCTTA-AT-A-TTATATAA
** *
38845700 TTAGAAATTAATATTATATAAGTTATGTAATTCGAAATTTTATCTTAATATTATATAA
1 TT--ATCTTAATATTATATAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAA
*
38845758 GTTATCTTAATATTATATAAGTTATGTAATTAGAAATTTTATCTTAATATTGTATAA
1 -TTATCTTAATATTATATAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAA
*
38845815 GTTATCTTAATATTATATAAGTTATGTAATTAGAAATTTTATCTTAATA--CTAT-A
1 -TTATCTTAATATTATATAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAA
*
38845869 -TATCTTAATATTATATAAGATATG
1 TTATCTTAATATTATATAAGTTATG
38845893 AAGTGTCCTG
Statistics
Matches: 219, Mismatches: 22, Indels: 25
0.82 0.08 0.09
Matches are distributed among these distances:
52 23 0.11
54 2 0.01
55 16 0.07
56 1 0.00
57 123 0.56
58 9 0.04
59 6 0.03
60 32 0.15
61 7 0.03
ACGTcount: A:0.41, C:0.03, G:0.09, T:0.47
Consensus pattern (56 bp):
TTATCTTAATATTATATAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAA
Found at i:38845874 original size:15 final size:15
Alignment explanation
Indices: 38845854--38845885 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
38845844 TTAGAAATTT
38845854 TATCTTAATACTATA
1 TATCTTAATACTATA
*
38845869 TATCTTAATATTATA
1 TATCTTAATACTATA
38845884 TA
1 TA
38845886 AGATATGAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (15 bp):
TATCTTAATACTATA
Found at i:38846192 original size:14 final size:15
Alignment explanation
Indices: 38846161--38846193 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
38846151 TAATTACGTA
38846161 AATTAAATAACTTTG
1 AATTAAATAACTTTG
38846176 AATTAAATAAC-TTG
1 AATTAAATAACTTTG
38846190 AATT
1 AATT
38846194 TCGTCATTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (15 bp):
AATTAAATAACTTTG
Found at i:38846698 original size:19 final size:20
Alignment explanation
Indices: 38846674--38846717 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
38846664 CGTCGGGTTT
*
38846674 GGGGAACTGTTAAGGA-TTA
1 GGGGAAATGTTAAGGATTTA
* *
38846693 GGGGAAATTTTAGGGATTTA
1 GGGGAAATGTTAAGGATTTA
38846713 GGGGA
1 GGGGA
38846718 GATGACAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.30, C:0.02, G:0.41, T:0.27
Consensus pattern (20 bp):
GGGGAAATGTTAAGGATTTA
Found at i:38847202 original size:20 final size:20
Alignment explanation
Indices: 38847165--38847202 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
38847155 AGTAATGCAT
*
38847165 TTTTAAAAAACAATTACACA
1 TTTTAAAAAACAAATACACA
*
38847185 TTTTAAAAAATAAATACA
1 TTTTAAAAAACAAATACA
38847203 TCAATATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.58, C:0.11, G:0.00, T:0.32
Consensus pattern (20 bp):
TTTTAAAAAACAAATACACA
Found at i:38848783 original size:20 final size:21
Alignment explanation
Indices: 38848746--38848784 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
38848736 AATTCCTCTT
38848746 TTATATGTTATGTTTAACTCG
1 TTATATGTTATGTTTAACTCG
38848767 TTATATGTTAT-TTTAACT
1 TTATATGTTATGTTTAACT
38848785 TACATTGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.26, C:0.08, G:0.10, T:0.56
Consensus pattern (21 bp):
TTATATGTTATGTTTAACTCG
Found at i:38848842 original size:29 final size:31
Alignment explanation
Indices: 38848799--38848862 Score: 87
Period size: 29 Copynumber: 2.1 Consensus size: 31
38848789 TTGTAAATGA
* *
38848799 TTTATTTTAATTTATGTTATATA-TA-TTAT
1 TTTATTTTAAGTTATGTTACATATTACTTAT
*
38848828 TTTATTTTAAGTTATTTTACATATTACTTAT
1 TTTATTTTAAGTTATGTTACATATTACTTAT
38848859 TTTA
1 TTTA
38848863 AAATTAACCT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 20 0.67
30 2 0.07
31 8 0.27
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (31 bp):
TTTATTTTAAGTTATGTTACATATTACTTAT
Found at i:38850405 original size:96 final size:96
Alignment explanation
Indices: 38850240--38850545 Score: 344
Period size: 96 Copynumber: 3.0 Consensus size: 96
38850230 GTAAAAATGC
*
38850240 CGCAAAAACTAAAACCCAGACGACGTCGTTTGGAGACACTTCGGTGACATTAGTGGCGTTTTTTG
1 CGCAAAAACTAAAACCCAGACGACGTCGTTTGGAGACACTTCGATGACATTAGTGGCGTTTTTTG
38850305 AATAGCGCCGCTAATAATATGAGTATTAGCG
66 AATAGCGCCGCTAATAATATGAGTATTAGCG
* * *
38850336 CGCAAAAACTAAACCCCAGACGACGTCGTTTGGAGACACTTCGATGACTTTAGTGGTGTTTTTCT
1 CGCAAAAACTAAAACCCAGACGACGTCGTTTGGAGACACTTCGATGACATTAGTGGCGTTTTT-T
38850401 -AATAGCGCCGCTAATAATATGAGTATTAGCGGTG
65 GAATAGCGCCGCTAATAATATGAGTATTAGC---G
* * *
38850435 TTTCTACAAAAACGTCGGAAAAACTAAAACCCAAACGACTTCGTTTGGAGACACTTCGGTGACAT
1 ------------CG-C--AAAAACTAAAACCCAGACGACGTCGTTTGGAGACACTTCGATGACAT
** *
38850500 TAGTGGCGTTTTCCGAGTAGCGCCGCTAATAATATGAGTATTAGCG
51 TAGTGGCGTTTTTTGAATAGCGCCGCTAATAATATGAGTATTAGCG
38850546 GTGTTTTGTA
Statistics
Matches: 177, Mismatches: 13, Indels: 25
0.82 0.06 0.12
Matches are distributed among these distances:
96 89 0.50
97 1 0.01
99 1 0.01
111 3 0.02
112 1 0.01
114 82 0.46
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (96 bp):
CGCAAAAACTAAAACCCAGACGACGTCGTTTGGAGACACTTCGATGACATTAGTGGCGTTTTTTG
AATAGCGCCGCTAATAATATGAGTATTAGCG
Found at i:38850502 original size:210 final size:212
Alignment explanation
Indices: 38850136--38850763 Score: 791
Period size: 210 Copynumber: 2.9 Consensus size: 212
38850126 TGGCGGCGTT
* * * * *
38850136 TAAACCCAGACGATGTCGTTTGGAGAAACTTCGGTGACATTAGTGGCGTTTTTCGAATAGCGACG
1 TAAACCCAGACGACGTCGTTTGGAGACACTTCGGTGACTTTAGTGGCGTTTTTCTAATAGCGCCG
* *
38850201 CTAATAATATGAGTATTAGCGGCGTTTTTGTAAAAATGCCGCAAAAACTAAAACCCAGACGACGT
66 CTAATAATATGAGTATTAGCGGCGTTTCTATAAAAATGCCGCAAAAACTAAAACCCAGACGACGT
*
38850266 CGTTTGGAGACACTTCGGTGACATTAGTGGCGTTTTTTGAATAGCGCCGCTAATAATATGAGTAT
131 CGTTTGGAGACACTTCGGTGACATTAGTGGCGTTTTTAGAATAGCGCCGCTAATAATATGAGTAT
38850331 TA-G-CG-CGCAAAAAC
196 TATGACGCCGCAAAAAC
* *
38850345 TAAACCCCAGACGACGTCGTTTGGAGACACTTCGATGACTTTAGTGGTGTTTTTCTAATAGCGCC
1 TAAA-CCCAGACGACGTCGTTTGGAGACACTTCGGTGACTTTAGTGGCGTTTTTCTAATAGCGCC
* * * * * * *
38850410 GCTAATAATATGAGTATTAGCGGTGTTTCTACAAAAACGTCGGAAAAACTAAAACCCAAACGACT
65 GCTAATAATATGAGTATTAGCGGCGTTTCTATAAAAATGCCGCAAAAACTAAAACCCAGACGACG
** *
38850475 TCGTTTGGAGACACTTCGGTGACATTAGTGGCGTTTTCCGAGTAGCGCCGCTAATAATATGAGTA
130 TCGTTTGGAGACACTTCGGTGACATTAGTGGCGTTTTTAGAATAGCGCCGCTAATAATATGAGTA
38850540 TTAGCGGTGTTTTGTATAAAAACGCCGCAAAAAC
195 TTA---------TG-------ACGCCGCAAAAAC
* *
38850574 TAAAACCTAGACGACGTCGTTTGGAGACACTTCGGTGA-TATTAGTGGCATTTTT-TGAATAGCG
1 T-AAACCCAGACGACGTCGTTTGGAGACACTTCGGTGACT-TTAGTGGCGTTTTTCT-AATAGCG
38850637 CCGCTAATAATATGAGTATTAGCGGCGTTTCTATAAAAATGCCGCAAAAACT-AAACCCTAGACG
63 CCGCTAATAATATGAGTATTAGCGGCGTTTCTATAAAAATGCCGCAAAAACTAAAACCC-AGACG
* * * *
38850701 ACGTCATTTGGAGACACTTCGGTGACTTTAGTGGCGTTTTTAGATTAGCGCCGCGAATAATAT
127 ACGTCGTTTGGAGACACTTCGGTGACATTAGTGGCGTTTTTAGAATAGCGCCGCTAATAATAT
38850764 AGGTTTTAAC
Statistics
Matches: 359, Mismatches: 36, Indels: 28
0.85 0.09 0.07
Matches are distributed among these distances:
209 4 0.01
210 174 0.48
220 1 0.00
228 10 0.03
229 167 0.47
230 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (212 bp):
TAAACCCAGACGACGTCGTTTGGAGACACTTCGGTGACTTTAGTGGCGTTTTTCTAATAGCGCCG
CTAATAATATGAGTATTAGCGGCGTTTCTATAAAAATGCCGCAAAAACTAAAACCCAGACGACGT
CGTTTGGAGACACTTCGGTGACATTAGTGGCGTTTTTAGAATAGCGCCGCTAATAATATGAGTAT
TATGACGCCGCAAAAAC
Found at i:38850611 original size:115 final size:114
Alignment explanation
Indices: 38850336--38850763 Score: 615
Period size: 114 Copynumber: 3.7 Consensus size: 114
38850326 AGTATTAGCG
* * * * *
38850336 CGCAAAAACTAAACCCCAGACGACGTCGTTTGGAGACACTTCGATGACTTTAGTGGTGTTTTTCT
1 CGCAAAAACTAAAACCCAGACGACGTCGTTTGGAGACACTTCGGTGACATTAGTGGCGTTTTTCG
* *
38850401 AATAGCGCCGCTAATAATATGAGTATTAGCGGTGTTTCTACAAAAACGT
66 AATAGCGCCGCTAATAATATGAGTATTAGCGGTGTTTCTATAAAAACGC
* * * *
38850450 CGGAAAAACTAAAACCCAAACGACTTCGTTTGGAGACACTTCGGTGACATTAGTGGCGTTTTCCG
1 CGCAAAAACTAAAACCCAGACGACGTCGTTTGGAGACACTTCGGTGACATTAGTGGCGTTTTTCG
* *
38850515 AGTAGCGCCGCTAATAATATGAGTATTAGCGGTGTTTTGTATAAAAACGC
66 AATAGCGCCGCTAATAATATGAGTATTAGCGGTG-TTTCTATAAAAACGC
* * * *
38850565 CGCAAAAACTAAAACCTAGACGACGTCGTTTGGAGACACTTCGGTGATATTAGTGGCATTTTTTG
1 CGCAAAAACTAAAACCCAGACGACGTCGTTTGGAGACACTTCGGTGACATTAGTGGCGTTTTTCG
* *
38850630 AATAGCGCCGCTAATAATATGAGTATTAGCGGCGTTTCTATAAAAATGC
66 AATAGCGCCGCTAATAATATGAGTATTAGCGGTGTTTCTATAAAAACGC
* * *
38850679 CGCAAAAACT-AAACCCTAGACGACGTCATTTGGAGACACTTCGGTGACTTTAGTGGCGTTTTTA
1 CGCAAAAACTAAAACCC-AGACGACGTCGTTTGGAGACACTTCGGTGACATTAGTGGCGTTTTTC
* *
38850743 GATTAGCGCCGCGAATAATAT
65 GAATAGCGCCGCTAATAATAT
38850764 AGGTTTTAAC
Statistics
Matches: 279, Mismatches: 33, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
113 5 0.02
114 173 0.62
115 101 0.36
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (114 bp):
CGCAAAAACTAAAACCCAGACGACGTCGTTTGGAGACACTTCGGTGACATTAGTGGCGTTTTTCG
AATAGCGCCGCTAATAATATGAGTATTAGCGGTGTTTCTATAAAAACGC
Found at i:38850737 original size:229 final size:229
Alignment explanation
Indices: 38850336--38850763 Score: 646
Period size: 229 Copynumber: 1.9 Consensus size: 229
38850326 AGTATTAGCG
* **
38850336 CGCAAAAACTAAACCCCAGACGACGTCGTTTGGAGACACTTCGATGACTTTAGTGGTGTTTTTCT
1 CGCAAAAACTAAAACCCAGACGACGTCGTTTGGAGACACTTCGATGACTTTAGTGGCATTTTTCT
* * *
38850401 AATAGCGCCGCTAATAATATGAGTATTAGCGGTGTTTCTACAAAAACGTCGGAAAAACTAAAACC
66 AATAGCGCCGCTAATAATATGAGTATTAGCGGCGTTTCTACAAAAACGCCGCAAAAACTAAAACC
* * * *
38850466 CAAACGACTTCGTTTGGAGACACTTCGGTGACATTAGTGGCGTTTTCCGAGTAGCGCCGCTAATA
131 CAAACGACGTCATTTGGAGACACTTCGGTGACATTAGTGGCGTTTTCAGAGTAGCGCCGCGAATA
38850531 ATATGAGTATTAGCGGTGTTTTGTATAAAAACGC
196 ATATGAGTATTAGCGGTGTTTTGTATAAAAACGC
* *
38850565 CGCAAAAACTAAAACCTAGACGACGTCGTTTGGAGACACTTCGGTGA-TATTAGTGGCATTTTT-
1 CGCAAAAACTAAAACCCAGACGACGTCGTTTGGAGACACTTCGATGACT-TTAGTGGCATTTTTC
* *
38850628 TGAATAGCGCCGCTAATAATATGAGTATTAGCGGCGTTTCTATAAAAATGCCGCAAAAACT-AAA
65 T-AATAGCGCCGCTAATAATATGAGTATTAGCGGCGTTTCTACAAAAACGCCGCAAAAACTAAAA
* * * *
38850692 CCCTAGACGACGTCATTTGGAGACACTTCGGTGACTTTAGTGGCGTTTTTAGATTAGCGCCGCGA
129 CCC-AAACGACGTCATTTGGAGACACTTCGGTGACATTAGTGGCGTTTTCAGAGTAGCGCCGCGA
38850757 ATAATAT
193 ATAATAT
38850764 AGGTTTTAAC
Statistics
Matches: 178, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
228 8 0.04
229 170 0.96
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (229 bp):
CGCAAAAACTAAAACCCAGACGACGTCGTTTGGAGACACTTCGATGACTTTAGTGGCATTTTTCT
AATAGCGCCGCTAATAATATGAGTATTAGCGGCGTTTCTACAAAAACGCCGCAAAAACTAAAACC
CAAACGACGTCATTTGGAGACACTTCGGTGACATTAGTGGCGTTTTCAGAGTAGCGCCGCGAATA
ATATGAGTATTAGCGGTGTTTTGTATAAAAACGC
Found at i:38851289 original size:21 final size:21
Alignment explanation
Indices: 38851251--38851291 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
38851241 TATGGTTTAA
*
38851251 TTAAGGGTTGGGATTTAAGGT
1 TTAAGGGTTGGGAGTTAAGGT
38851272 TTAAGGGTTAGGG-GTTAAGG
1 TTAAGGGTT-GGGAGTTAAGG
38851292 GTGTAGGGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.24, C:0.00, G:0.41, T:0.34
Consensus pattern (21 bp):
TTAAGGGTTGGGAGTTAAGGT
Found at i:38851298 original size:15 final size:14
Alignment explanation
Indices: 38851272--38851336 Score: 53
Period size: 14 Copynumber: 4.6 Consensus size: 14
38851262 GATTTAAGGT
38851272 TTAAGGGTTAGGGG
1 TTAAGGGTTAGGGG
38851286 TTAAGGGTGTAGGGG
1 TTAAGGGT-TAGGGG
* *
38851301 GT-AGATGTTA-GGG
1 TTAAG-GGTTAGGGG
* *
38851314 TTAAGAGTTAGGGA
1 TTAAGGGTTAGGGG
*
38851328 TTTAGGGTT
1 TTAAGGGTT
38851337 TAAGGTTCCA
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
13 8 0.20
14 23 0.57
15 9 0.22
ACGTcount: A:0.23, C:0.00, G:0.45, T:0.32
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:38851561 original size:14 final size:15
Alignment explanation
Indices: 38851535--38851565 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
38851525 GTACTATATA
38851535 TATGGATTTAGGGAT
1 TATGGATTTAGGGAT
38851550 TATGGA-TTAGGGAT
1 TATGGATTTAGGGAT
38851564 TA
1 TA
38851566 AGGGTTGGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.29, C:0.00, G:0.32, T:0.39
Consensus pattern (15 bp):
TATGGATTTAGGGAT
Found at i:38851648 original size:15 final size:16
Alignment explanation
Indices: 38851628--38851666 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
38851618 ACGTTAGTGG
38851628 TTAAGAG-TTAGGGAT
1 TTAAGAGTTTAGGGAT
*
38851643 TTAAGAGGTTTAGGGTT
1 TTAAGA-GTTTAGGGAT
38851660 TTAAGAG
1 TTAAGAG
38851667 GGTCGGGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 6 0.29
16 2 0.10
17 13 0.62
ACGTcount: A:0.31, C:0.00, G:0.33, T:0.36
Consensus pattern (16 bp):
TTAAGAGTTTAGGGAT
Found at i:38851657 original size:17 final size:17
Alignment explanation
Indices: 38851635--38851667 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
38851625 TGGTTAAGAG
38851635 TTAGGGATTTAAGAGGT
1 TTAGGGATTTAAGAGGT
*
38851652 TTAGGGTTTTAAGAGG
1 TTAGGGATTTAAGAGG
38851668 GTCGGGTTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.36, T:0.36
Consensus pattern (17 bp):
TTAGGGATTTAAGAGGT
Found at i:38852012 original size:6 final size:6
Alignment explanation
Indices: 38852001--38852030 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
38851991 ACTTAAGAAA
38852001 TAAAAT TAAAAT TAAAAT TAAAAT ATAAAA
1 TAAAAT TAAAAT TAAAAT TAAAAT -TAAAA
38852031 ATCAAAATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 18 0.78
7 5 0.22
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (6 bp):
TAAAAT
Found at i:38852029 original size:19 final size:18
Alignment explanation
Indices: 38851998--38852049 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 18
38851988 ATTACTTAAG
*
38851998 AAATAAAAT-TAAAATTA
1 AAATAAAATATAAAATCA
38852015 AAATTAAAATATAAAAATCA
1 AAA-TAAAATAT-AAAATCA
*
38852035 AAATGAAATATAAAA
1 AAATAAAATATAAAA
38852050 ACTCTAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
17 3 0.10
18 10 0.33
19 8 0.27
20 9 0.30
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (18 bp):
AAATAAAATATAAAATCA
Found at i:38852037 original size:20 final size:20
Alignment explanation
Indices: 38852008--38852060 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
38851998 AAATAAAATT
*
38852008 AAAATTAAAATTAAAATATA
1 AAAATCAAAATTAAAATATA
*
38852028 AAAATCAAAA-TGAAATATA
1 AAAATCAAAATTAAAATATA
38852047 AAAACTCTAAAATT
1 AAAA-TC-AAAATT
38852061 TTTAATTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 12 0.43
20 11 0.39
21 4 0.14
22 1 0.04
ACGTcount: A:0.66, C:0.06, G:0.02, T:0.26
Consensus pattern (20 bp):
AAAATCAAAATTAAAATATA
Found at i:38852511 original size:84 final size:83
Alignment explanation
Indices: 38852352--38852629 Score: 254
Period size: 84 Copynumber: 3.3 Consensus size: 83
38852342 AATTTTATCA
* ** * * * * * ** **
38852352 TTTTTGTAAACAAAACGGTGTCGTTTTGCCTGGCATACTAACGGCATTAGTGGCATTATGCCGAA
1 TTTTT-TAAACCAAACGGTGTCGTTTTAACTAGCACATTAACGACATTAATGGCGCTATGATGAA
*
38852417 AACGCTGCAAA-TTGTCGGGG
65 AACGCCGCAAAGTT-TC-GGG
* ** * * * * *
38852437 TTTTTTTAATGAAATGGTGTCGTTTTAACTAGCACATTAAGGGCATTAGTGGCGCTATGGT-AAA
1 TTTTTTAAACCAAACGGTGTCGTTTTAACTAGCACATTAACGACATTAATGGCGCTATGATGAAA
38852501 AGCGCCGCAAAGTTTTCGGG
66 A-CGCCGCAAAG-TTTCGGG
** *
38852521 TTTTTTAAACCAAACGGTGTCGTTTTCCCTGGCACATTAACGACATTAATGGCGCTATGATGAAA
1 TTTTTTAAACCAAACGGTGTCGTTTTAACTAGCACATTAACGACATTAATGGCGCTATGATGAAA
*
38852586 ACGCCGTAAAGTTTCGGG
66 ACGCCGCAAAGTTTCGGG
* *
38852604 TTTTTTAAACAAAACGGTGCCGTTTT
1 TTTTTTAAACCAAACGGTGTCGTTTT
38852630 GCCTTTACGG
Statistics
Matches: 160, Mismatches: 29, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
83 35 0.22
84 112 0.70
85 11 0.07
86 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (83 bp):
TTTTTTAAACCAAACGGTGTCGTTTTAACTAGCACATTAACGACATTAATGGCGCTATGATGAAA
ACGCCGCAAAGTTTCGGG
Found at i:38852935 original size:16 final size:16
Alignment explanation
Indices: 38852893--38852950 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
38852883 CCGTCGATCG
* *
38852893 TCTACCGTCGCATTCG
1 TCTACCGTCGCACTCC
* *
38852909 TCGACCGTCGCAGTCC
1 TCTACCGTCGCACTCC
*
38852925 TCTACCATCGCACTCC
1 TCTACCGTCGCACTCC
*
38852941 TCTGCCGTCG
1 TCTACCGTCG
38852951 AAGAAATCGG
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.12, C:0.43, G:0.19, T:0.26
Consensus pattern (16 bp):
TCTACCGTCGCACTCC
Found at i:38852949 original size:32 final size:30
Alignment explanation
Indices: 38852879--38852951 Score: 76
Period size: 32 Copynumber: 2.4 Consensus size: 30
38852869 AACCGTCCCT
* * * *
38852879 TCTGCCGTCGATCGTCTACCGTCGCATTCG
1 TCTGCCGTCGATCCTCTACCATCGCACTCC
38852909 TC-GACCGTCGCAGTCCTCTACCATCGCACTCC
1 TCTG-CCGTCG-A-TCCTCTACCATCGCACTCC
38852941 TCTGCCGTCGA
1 TCTGCCGTCGA
38852952 AGAAATCGGT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
29 1 0.03
30 8 0.23
31 2 0.06
32 23 0.66
33 1 0.03
ACGTcount: A:0.12, C:0.41, G:0.21, T:0.26
Consensus pattern (30 bp):
TCTGCCGTCGATCCTCTACCATCGCACTCC
Found at i:38854163 original size:14 final size:14
Alignment explanation
Indices: 38854144--38854170 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
38854134 CACGATTTCT
38854144 TACATGTCTGTTCC
1 TACATGTCTGTTCC
38854158 TACATGTCTGTTC
1 TACATGTCTGTTC
38854171 TGCTTTGTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.26, G:0.15, T:0.44
Consensus pattern (14 bp):
TACATGTCTGTTCC
Found at i:38855119 original size:9 final size:9
Alignment explanation
Indices: 38855105--38855387 Score: 72
Period size: 9 Copynumber: 29.8 Consensus size: 9
38855095 TTAATTAATA
38855105 TACATAAAT
1 TACATAAAT
*
38855114 TACATAAGT
1 TACATAAAT
38855123 TACATTAATATT
1 TACA-TAA-A-T
38855135 ATACATAAAT
1 -TACATAAAT
*
38855145 TACATAACT
1 TACATAAAT
*
38855154 TA-ATTAAT
1 TACATAAAT
38855162 TA-AT--AT
1 TACATAAAT
*
38855168 TATGCATAACT
1 TA--CATAAAT
*
38855179 TGCATTAATATT
1 TACA-TAA-A-T
38855191 ATACATAAAT
1 -TACATAAAT
*
38855201 TACATAACT
1 TACATAAAT
*
38855210 TA-ATTAAT
1 TACATAAAT
*
38855218 TA-AT-ATT
1 TACATAAAT
*
38855225 ATACATAACT
1 -TACATAAAT
*
38855235 TACATAACT
1 TACATAAAT
*
38855244 TAC--AACT
1 TACATAAAT
*
38855251 TACATAACT
1 TACATAAAT
38855260 TACATTTTTATAAT
1 TACA----TA-AAT
38855274 TATTCATAAAT
1 TA--CATAAAT
*
38855285 TACATAACT
1 TACATAAAT
38855294 TACATTAATATT
1 TACA-TAA-A-T
38855306 ATACATAAAT
1 -TACATAAAT
*
38855316 TACATAACT
1 TACATAAAT
*
38855325 TA-ATTAAT
1 TACATAAAT
38855333 TA-AT-AA-
1 TACATAAAT
38855339 -ACATAAAT
1 TACATAAAT
38855347 TACATAACTAAT
1 TACAT-A--AAT
38855359 TACATTAATATT
1 TACA-TAA-A-T
38855371 ATACATAAAT
1 -TACATAAAT
38855381 TACATAA
1 TACATAA
38855388 CTTTGTTAAT
Statistics
Matches: 214, Mismatches: 20, Indels: 80
0.68 0.06 0.25
Matches are distributed among these distances:
5 1 0.00
6 6 0.03
7 13 0.06
8 26 0.12
9 89 0.42
10 17 0.08
11 12 0.06
12 26 0.12
13 18 0.08
14 4 0.02
16 2 0.01
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.39
Consensus pattern (9 bp):
TACATAAAT
Found at i:38855185 original size:56 final size:56
Alignment explanation
Indices: 38855114--38855475 Score: 415
Period size: 56 Copynumber: 6.2 Consensus size: 56
38855104 ATACATAAAT
*
38855114 TACATAAGTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTA
1 TACATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTA
* *
38855170 TGCATAACTTGCATTAATATTATACATAAATTACATAACTTAATTAATTAATATTA
1 TACATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTA
** * *** * *
38855226 TACATAACTTACA-TAACTTACAACTTACATAACTTACATTTTTATAATT-ATTCATA-AA
1 TACATAACTTACATTAA--TATTA--TACATAAATTACATAACT-TAATTAATTAATATTA
*
38855284 TTACATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATAAACATAAA
1 -TACATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAAT----AT-TA
**
38855346 TTACATAACTAATTACATTAATATTATACATAAATTACATAACTTTGTTAATTAATATTA
1 -TACATAAC---TTACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTA
* * *
38855406 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTA
1 TACATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTA
38855462 TACATAACTTACAT
1 TACATAACTTACAT
38855476 AACTTACAAC
Statistics
Matches: 263, Mismatches: 26, Indels: 34
0.81 0.08 0.11
Matches are distributed among these distances:
55 8 0.03
56 142 0.54
57 3 0.01
58 4 0.02
59 41 0.16
60 10 0.04
61 2 0.01
62 11 0.04
65 42 0.16
ACGTcount: A:0.46, C:0.12, G:0.02, T:0.41
Consensus pattern (56 bp):
TACATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTA
Found at i:38855223 original size:34 final size:34
Alignment explanation
Indices: 38855182--38855419 Score: 152
Period size: 34 Copynumber: 6.7 Consensus size: 34
38855172 CATAACTTGC
38855182 ATTAATATTATACATAAATTACATAACTTAATTA
1 ATTAATATTATACATAAATTACATAACTTAATTA
*
38855216 ATTAATATTATACATAACTTACATAACTTACA--A
1 ATTAATATTATACATAAATTACATAACTTA-ATTA
* * *
38855249 CTTACATAACT-TACATTTTTATAATTATTCATAAATTACA-TA
1 ATTA-AT-ATTATACA----TA-AATTA--CATAACTTA-ATTA
* * *
38855291 ACTTACAT-TAATATTATACATAAATTACATAACTTAATTA
1 A-TTA-ATATTATA-CATA-A-AT--TACATAACTTAATTA
38855331 ATTAATA--A-ACATAAATTACATAAC-TAATTA
1 ATTAATATTATACATAAATTACATAACTTAATTA
**
38855361 CATTAATATTATACATAAATTACATAACTTTGTTA
1 -ATTAATATTATACATAAATTACATAACTTAATTA
*
38855396 ATTAATATTATACATAACTTACAT
1 ATTAATATTATACATAAATTACAT
38855420 TAATATTATA
Statistics
Matches: 163, Mismatches: 17, Indels: 48
0.71 0.07 0.21
Matches are distributed among these distances:
30 6 0.04
31 15 0.09
33 6 0.04
34 75 0.46
35 10 0.06
36 1 0.01
37 1 0.01
38 4 0.02
39 11 0.07
40 12 0.07
41 10 0.06
42 5 0.03
43 7 0.04
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.40
Consensus pattern (34 bp):
ATTAATATTATACATAAATTACATAACTTAATTA
Found at i:38855252 original size:16 final size:16
Alignment explanation
Indices: 38855231--38855263 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
38855221 TATTATACAT
38855231 AACTTACATAACTTAC
1 AACTTACATAACTTAC
38855247 AACTTACATAACTTAC
1 AACTTACATAACTTAC
38855263 A
1 A
38855264 TTTTTATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.30
Consensus pattern (16 bp):
AACTTACATAACTTAC
Found at i:38855424 original size:22 final size:22
Alignment explanation
Indices: 38855396--38855441 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
38855386 AACTTTGTTA
*
38855396 ATTAATATTATACATAACTTAC
1 ATTAATATTATACATAAATTAC
*
38855418 ATTAATATTATACTTAAATTAC
1 ATTAATATTATACATAAATTAC
38855440 AT
1 AT
38855442 AAGTTAGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (22 bp):
ATTAATATTATACATAAATTAC
Found at i:38855456 original size:90 final size:90
Alignment explanation
Indices: 38855316--38855480 Score: 244
Period size: 90 Copynumber: 1.8 Consensus size: 90
38855306 ATACATAAAT
38855316 TACATAACTTAATTAATTAATAAACATAAATTACATAACTAATTACATTAATATTATACATAAAT
1 TACATAACTTAATTAATTAATAAACATAAATTACATAACTAATTACATTAATATTATACATAAAT
38855381 TACATAACTTTGTTAATTAATATTA
66 TACATAACTTTGTTAATTAATATTA
* * * * *
38855406 TACATAACTTACATTAA-TATTATACTTAAATTACATAAGTTAGTTA-ATTAATATTATACATAA
1 TACATAACTTA-ATTAATTAATAAACATAAATTACATAA-CTAATTACATTAATATTATACATAA
*
38855469 CTTACATAACTT
64 ATTACATAACTT
38855481 ACAACTTACA
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
90 57 0.85
91 10 0.15
ACGTcount: A:0.47, C:0.11, G:0.02, T:0.41
Consensus pattern (90 bp):
TACATAACTTAATTAATTAATAAACATAAATTACATAACTAATTACATTAATATTATACATAAAT
TACATAACTTTGTTAATTAATATTA
Found at i:38855476 original size:9 final size:9
Alignment explanation
Indices: 38855462--38855608 Score: 96
Period size: 9 Copynumber: 17.2 Consensus size: 9
38855452 ATTAATATTA
38855462 TACATAACT
1 TACATAACT
38855471 TACATAACT
1 TACATAACT
38855480 TAC--AACT
1 TACATAACT
38855487 TACATAACT
1 TACATAACT
***
38855496 TACATTTTTT
1 TACA-TAACT
*
38855506 TA-ATTA-T
1 TACATAACT
* *
38855513 T-CGTAAAT
1 TACATAACT
*
38855521 TACACAACT
1 TACATAACT
* *
38855530 TACTTAATT
1 TACATAACT
*
38855539 TTCATAA--
1 TACATAACT
*
38855546 TAAATAACT
1 TACATAACT
38855555 TACATAACT
1 TACATAACT
38855564 TAC--AACT
1 TACATAACT
38855571 TACATAACT
1 TACATAACT
* *
38855580 TATATGACT
1 TACATAACT
38855589 TACATAACT
1 TACATAACT
*
38855598 TACATAGCT
1 TACATAACT
38855607 TA
1 TA
38855609 ACTATACTTA
Statistics
Matches: 106, Mismatches: 22, Indels: 20
0.72 0.15 0.14
Matches are distributed among these distances:
7 23 0.22
8 4 0.04
9 75 0.71
10 4 0.04
ACGTcount: A:0.41, C:0.18, G:0.02, T:0.39
Consensus pattern (9 bp):
TACATAACT
Found at i:38855488 original size:16 final size:16
Alignment explanation
Indices: 38855467--38855499 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
38855457 TATTATACAT
38855467 AACTTACATAACTTAC
1 AACTTACATAACTTAC
38855483 AACTTACATAACTTAC
1 AACTTACATAACTTAC
38855499 A
1 A
38855500 TTTTTTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.30
Consensus pattern (16 bp):
AACTTACATAACTTAC
Done.