Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 126 of 240
Found at i:39161459 original size:32 final size:32
Alignment explanation
Indices: 39161357--39161462 Score: 81
Period size: 32 Copynumber: 3.2 Consensus size: 32
39161347 TATTTATTTT
* *
39161357 ATTTTTTAAATATTAATTAATGATATATGACG
1 ATTTTTTAAATATCAATTAATGATATATGTCG
* ** * * **
39161389 ATTTCTTAGCT-TCACCTATTAAATAAT-TATTTTT
1 ATTTTTTAAATATCA---ATT-AATGATATATGTCG
39161423 ATTTTTTAAATATCAATTAATGATATATGTCG
1 ATTTTTTAAATATCAATTAATGATATATGTCG
39161455 ATTTTTTA
1 ATTTTTTA
39161463 GCTTCACCTC
Statistics
Matches: 52, Mismatches: 16, Indels: 12
0.65 0.20 0.15
Matches are distributed among these distances:
31 7 0.13
32 23 0.44
34 14 0.27
35 8 0.15
ACGTcount: A:0.35, C:0.08, G:0.07, T:0.51
Consensus pattern (32 bp):
ATTTTTTAAATATCAATTAATGATATATGTCG
Found at i:39179034 original size:24 final size:24
Alignment explanation
Indices: 39178970--39179036 Score: 82
Period size: 23 Copynumber: 2.8 Consensus size: 24
39178960 GATACGGACC
* * * *
39178970 TTTCATTACTATCCTGTTCGACCT
1 TTTCATTAATATCCTTTTCAAACT
*
39178994 TTTCATT-ATATCTTTTTCAAACT
1 TTTCATTAATATCCTTTTCAAACT
39179017 TTTCATTAATATCCTTTTCA
1 TTTCATTAATATCCTTTTCA
39179037 GATACATCTT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
23 18 0.50
24 18 0.50
ACGTcount: A:0.22, C:0.22, G:0.03, T:0.52
Consensus pattern (24 bp):
TTTCATTAATATCCTTTTCAAACT
Found at i:39179081 original size:40 final size:40
Alignment explanation
Indices: 39179007--39179141 Score: 218
Period size: 40 Copynumber: 3.4 Consensus size: 40
39178997 CATTATATCT
* * *
39179007 TTTTCAAACTTTTCA-TTAATATCCTTTTCAGATACATCT
1 TTTTCAACCTTTTCATTTGATATCCTTTTCAGATACATCC
*
39179046 TTTTCAACCTTTTCATTTGATATCCTTTTCGGATACATCC
1 TTTTCAACCTTTTCATTTGATATCCTTTTCAGATACATCC
*
39179086 TTTTCAACCTTTTCATTTGATATCCTTTTCATATACATCC
1 TTTTCAACCTTTTCATTTGATATCCTTTTCAGATACATCC
39179126 TTTTCAACCTTTTCAT
1 TTTTCAACCTTTTCAT
39179142 GGATTCGTAA
Statistics
Matches: 89, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 14 0.16
40 75 0.84
ACGTcount: A:0.23, C:0.24, G:0.04, T:0.50
Consensus pattern (40 bp):
TTTTCAACCTTTTCATTTGATATCCTTTTCAGATACATCC
Found at i:39179127 original size:15 final size:16
Alignment explanation
Indices: 39179093--39179131 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
39179083 TCCTTTTCAA
* *
39179093 CCTTTTCATTTGATAT
1 CCTTTTCATATGACAT
39179109 CCTTTTCATAT-ACAT
1 CCTTTTCATATGACAT
39179124 CCTTTTCA
1 CCTTTTCA
39179132 ACCTTTTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 11 0.52
16 10 0.48
ACGTcount: A:0.21, C:0.26, G:0.03, T:0.51
Consensus pattern (16 bp):
CCTTTTCATATGACAT
Found at i:39179632 original size:27 final size:28
Alignment explanation
Indices: 39179581--39179635 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
39179571 CCCCCAACTC
39179581 TTCTCATCAAATTTTTTTTACTTTCCCT
1 TTCTCATCAAATTTTTTTTACTTTCCCT
* *
39179609 TTCTCTTC-AATTTTTTTTATTTTCCCT
1 TTCTCATCAAATTTTTTTTACTTTCCCT
39179636 CCCCTTTTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 18 0.72
28 7 0.28
ACGTcount: A:0.15, C:0.24, G:0.00, T:0.62
Consensus pattern (28 bp):
TTCTCATCAAATTTTTTTTACTTTCCCT
Found at i:39183739 original size:21 final size:18
Alignment explanation
Indices: 39183707--39183746 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
39183697 ATTTATATGC
39183707 ATAATGGAATAATAAACATG
1 ATAATGGAATAA-AAA-ATG
39183727 ATAATGTGAATAAAAAATG
1 ATAATG-GAATAAAAAATG
39183746 A
1 A
39183747 ACAAAAACGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 9 0.47
21 6 0.32
ACGTcount: A:0.57, C:0.03, G:0.15, T:0.25
Consensus pattern (18 bp):
ATAATGGAATAAAAAATG
Found at i:39184004 original size:39 final size:38
Alignment explanation
Indices: 39183932--39184008 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 38
39183922 AGGGGAGTAT
*
39183932 ATATGTATGTATATACATAAAATTATGGAAATATGAAAA
1 ATATGTATATATATACATAAAATTATGGAAATAT-AAAA
* *
39183971 ATATGTATATATATATCTTAAAATTATTG-AATATAAAA
1 ATATGTATATATATA-CATAAAATTATGGAAATATAAAA
39184009 GTTTATGCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
38 4 0.12
39 19 0.56
40 11 0.32
ACGTcount: A:0.51, C:0.03, G:0.09, T:0.38
Consensus pattern (38 bp):
ATATGTATATATATACATAAAATTATGGAAATATAAAA
Found at i:39184991 original size:7 final size:6
Alignment explanation
Indices: 39184964--39185006 Score: 59
Period size: 6 Copynumber: 6.8 Consensus size: 6
39184954 TGTAGTTTTT
*
39184964 AAATATA AAAGAA AAATAA AAATAA AAATAA AAATAA AGAATA
1 AAATA-A AAATAA AAATAA AAATAA AAATAA AAATAA A-AATA
39185007 CAAACAGTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
6 25 0.76
7 8 0.24
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:39185594 original size:26 final size:25
Alignment explanation
Indices: 39185533--39185597 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
39185523 CACATCATTG
*
39185533 CTTACACAAGCTGTGAAATGGGCTA
1 CTTACACGAGCTGTGAAATGGGCTA
*
39185558 CTTACAAGAGCTGTGAAATGGGCCTA
1 CTTACACGAGCTGTGAAATGGG-CTA
39185584 CTTACACGAGCTGT
1 CTTACACGAGCTGT
39185598 AGGTCAGAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
25 20 0.56
26 16 0.44
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.25
Consensus pattern (25 bp):
CTTACACGAGCTGTGAAATGGGCTA
Found at i:39187669 original size:22 final size:22
Alignment explanation
Indices: 39187644--39187686 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
39187634 AAGTTTAAAA
39187644 TCAATTTAAAATAGCAAGTTAT
1 TCAATTTAAAATAGCAAGTTAT
39187666 TCAATTTAAAATAGCAAGTTA
1 TCAATTTAAAATAGCAAGTTA
39187687 ACTTAATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.35
Consensus pattern (22 bp):
TCAATTTAAAATAGCAAGTTAT
Found at i:39188252 original size:21 final size:20
Alignment explanation
Indices: 39188228--39188273 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
39188218 TTTAAGAAAA
* *
39188228 TTAATATTCGAACACTTAATT
1 TTAATATTCCAAC-CTAAATT
*
39188249 TTAATTTTCCAACCTAAATT
1 TTAATATTCCAACCTAAATT
39188269 TTAAT
1 TTAAT
39188274 CTCGATTAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.37, C:0.15, G:0.02, T:0.46
Consensus pattern (20 bp):
TTAATATTCCAACCTAAATT
Found at i:39201613 original size:9 final size:9
Alignment explanation
Indices: 39201596--39201632 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
39201586 TGAGTTTTCG
39201596 AATTCGAAT
1 AATTCGAAT
*
39201605 AACTCGAAT
1 AATTCGAAT
39201614 AATTCGAAT
1 AATTCGAAT
39201623 AATTCGAAT
1 AATTCGAAT
39201632 A
1 A
39201633 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:39201708 original size:30 final size:30
Alignment explanation
Indices: 39201674--39201735 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
39201664 AACTCCCAAA
* * *
39201674 CCTTTTTACTTTTCCCTCAAAACTTTTACT
1 CCTTTCTACTTTCCCCCCAAAACTTTTACT
39201704 CCTTTCTACTTTCCCCCCAAAACTTTTACT
1 CCTTTCTACTTTCCCCCCAAAACTTTTACT
39201734 CC
1 CC
39201736 CCTCCCCTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.19, C:0.37, G:0.00, T:0.44
Consensus pattern (30 bp):
CCTTTCTACTTTCCCCCCAAAACTTTTACT
Found at i:39201880 original size:30 final size:31
Alignment explanation
Indices: 39201846--39201905 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
39201836 AAATCTTTTA
*
39201846 TTTT-CCCTCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCT-AAAACTTTTACTCCCTTCCCAC
*
39201876 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCTAAAACTTTTACTCCCTTCCCA
39201906 TCTCACCTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 17 0.65
31 9 0.35
ACGTcount: A:0.20, C:0.38, G:0.00, T:0.42
Consensus pattern (31 bp):
TTTTCCCCTAAAACTTTTACTCCCTTCCCAC
Found at i:39202029 original size:19 final size:18
Alignment explanation
Indices: 39201996--39202039 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 18
39201986 ACTTTTCCTC
39201996 AAATTTTTATT-CCCCAA
1 AAATTTTTATTCCCCCAA
*
39202013 AAATTTTTATTTTCCCCCTA
1 AAATTTTTA--TTCCCCCAA
39202033 AAATTTT
1 AAATTTT
39202040 ACTTCTCACC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 9 0.39
19 2 0.09
20 12 0.52
ACGTcount: A:0.32, C:0.20, G:0.00, T:0.48
Consensus pattern (18 bp):
AAATTTTTATTCCCCCAA
Found at i:39203059 original size:18 final size:18
Alignment explanation
Indices: 39203025--39203061 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
39203015 CCTTAAATGT
* *
39203025 TTTAAAATCCTAGAAGGA
1 TTTAAAATCCCAAAAGGA
39203043 TTTAAAATCCCAAAAGGA
1 TTTAAAATCCCAAAAGGA
39203061 T
1 T
39203062 ATAGAGTTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.27
Consensus pattern (18 bp):
TTTAAAATCCCAAAAGGA
Found at i:39205019 original size:18 final size:19
Alignment explanation
Indices: 39204998--39205034 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
39204988 GTAATTGAAC
39204998 TTGAAAATT-GGCTTGAGA
1 TTGAAAATTAGGCTTGAGA
39205016 TTGAAAATTAGGCTTGAGA
1 TTGAAAATTAGGCTTGAGA
39205035 ACCCAAAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.32
Consensus pattern (19 bp):
TTGAAAATTAGGCTTGAGA
Found at i:39205812 original size:21 final size:22
Alignment explanation
Indices: 39205788--39205832 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
39205778 AGAAAAAGAG
39205788 AAATACAAAAAAG-AATAG-ATC
1 AAAT-CAAAAAAGAAATAGAATC
*
39205809 AAATCAAAAAGGAAATAGAATC
1 AAATCAAAAAAGAAATAGAATC
39205831 AA
1 AA
39205833 CAATTTGCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 7 0.33
21 9 0.43
22 5 0.24
ACGTcount: A:0.67, C:0.09, G:0.11, T:0.13
Consensus pattern (22 bp):
AAATCAAAAAAGAAATAGAATC
Found at i:39208724 original size:35 final size:34
Alignment explanation
Indices: 39208630--39208902 Score: 317
Period size: 35 Copynumber: 8.1 Consensus size: 34
39208620 GTCTAAAAAG
* * *
39208630 AAATAATACATGAACAGGAGAGATTCCCTGCAA-G
1 AAATAAT-CGTGAACAGGAAAGATTCCCTGCAACA
*
39208664 AAATGAT-GTGAACA-GAAAGATTCCCTGCAACA
1 AAATAATCGTGAACAGGAAAGATTCCCTGCAACA
* *
39208696 AAATAATCCGTGAACAGGAGAGATTCCCTGCAA-G
1 AAATAAT-CGTGAACAGGAAAGATTCCCTGCAACA
*
39208730 AAATGAT-GTGAACAGGAAAGATTCCCTGCAACA
1 AAATAATCGTGAACAGGAAAGATTCCCTGCAACA
* *
39208763 AAATAATGTGTGAACAGGAGAGATTCCCTGCAACA
1 AAATAAT-CGTGAACAGGAAAGATTCCCTGCAACA
* *
39208798 AAATAATGCGTGAACAGGAGAGATTCCCTGCAA-G
1 AAATAAT-CGTGAACAGGAAAGATTCCCTGCAACA
*
39208832 AAATGAT-GTGAACAGGAAAGATTCCCTGCAACA
1 AAATAATCGTGAACAGGAAAGATTCCCTGCAACA
* * *
39208865 GAATAATGCGTGAACAGGAAATATTCCCTGCAAGA
1 AAATAAT-CGTGAACAGGAAAGATTCCCTGCAACA
39208900 AAA
1 AAA
39208903 GACAAGTGAA
Statistics
Matches: 207, Mismatches: 22, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
31 15 0.07
32 58 0.28
33 11 0.05
34 25 0.12
35 98 0.47
ACGTcount: A:0.42, C:0.18, G:0.22, T:0.18
Consensus pattern (34 bp):
AAATAATCGTGAACAGGAAAGATTCCCTGCAACA
Found at i:39208785 original size:67 final size:67
Alignment explanation
Indices: 39208640--39208902 Score: 338
Period size: 67 Copynumber: 3.9 Consensus size: 67
39208630 AAATAATACA
*
39208640 TGAACAGGAGAGATTCCCTGCAAGAAATGAT-GTGAACA-GAAAGATTCCCTGCAACAAAATAAT
1 TGAACAGGAGAGATTCCCTGCAAGAAATAATCGTGAACAGGAAAGATTCCCTGCAACAAAATAAT
*
39208703 CCG
66 -TG
*
39208706 TGAACAGGAGAGATTCCCTGCAAGAAATGAT-GTGAACAGGAAAGATTCCCTGCAACAAAATAAT
1 TGAACAGGAGAGATTCCCTGCAAGAAATAATCGTGAACAGGAAAGATTCCCTGCAACAAAATAAT
39208770 GTG
66 -TG
* * * *
39208773 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTGCAA-GAAATG
1 TGAACAGGAGAGATTCCCTGCAA-GAAATAAT-CGTGAACAGGAAAGATTCCCTGCAACAAAATA
39208837 A-TG
64 ATTG
* * * *
39208840 TGAACAGGAAAGATTCCCTGCAACAGAATAATGCGTGAACAGGAAATATTCCCTGCAAGAAAA
1 TGAACAGGAGAGATTCCCTGCAAGA-AATAAT-CGTGAACAGGAAAGATTCCCTGCAACAAAA
39208903 GACAAGTGAA
Statistics
Matches: 179, Mismatches: 12, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
66 39 0.22
67 103 0.58
68 9 0.05
69 5 0.03
70 23 0.13
ACGTcount: A:0.41, C:0.18, G:0.23, T:0.18
Consensus pattern (67 bp):
TGAACAGGAGAGATTCCCTGCAAGAAATAATCGTGAACAGGAAAGATTCCCTGCAACAAAATAAT
TG
Found at i:39208804 original size:102 final size:102
Alignment explanation
Indices: 39208640--39208902 Score: 417
Period size: 102 Copynumber: 2.6 Consensus size: 102
39208630 AAATAATACA
* * *
39208640 TGAACAGGAGAGATTCCCTGCAA-GAAATGA--TGTGAACA-GAAAGATTCCCTGCAACAAAATA
1 TGAACAGGAAAGATTCCCTGCAACAAAATAATGTGTGAACAGGAAAGATTCCCTGCAACAAAATA
39208701 ATCCGTGAACAGGAGAGATTCCCTGCAAGAAATGATG
66 ATCCGTGAACAGGAGAGATTCCCTGCAAGAAATGATG
*
39208738 TGAACAGGAAAGATTCCCTGCAACAAAATAATGTGTGAACAGGAGAGATTCCCTGCAACAAAATA
1 TGAACAGGAAAGATTCCCTGCAACAAAATAATGTGTGAACAGGAAAGATTCCCTGCAACAAAATA
*
39208803 ATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGATG
66 ATCCGTGAACAGGAGAGATTCCCTGCAAGAAATGATG
* * * *
39208840 TGAACAGGAAAGATTCCCTGCAACAGAATAATGCGTGAACAGGAAATATTCCCTGCAAGAAAA
1 TGAACAGGAAAGATTCCCTGCAACAAAATAATGTGTGAACAGGAAAGATTCCCTGCAACAAAA
39208903 GACAAGTGAA
Statistics
Matches: 151, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
98 22 0.15
99 5 0.03
101 8 0.05
102 116 0.77
ACGTcount: A:0.41, C:0.18, G:0.23, T:0.18
Consensus pattern (102 bp):
TGAACAGGAAAGATTCCCTGCAACAAAATAATGTGTGAACAGGAAAGATTCCCTGCAACAAAATA
ATCCGTGAACAGGAGAGATTCCCTGCAAGAAATGATG
Found at i:39209212 original size:13 final size:13
Alignment explanation
Indices: 39209196--39209229 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
39209186 TGCATTTACA
39209196 AAATTAAGTTTTC
1 AAATTAAGTTTTC
39209209 AAATTAAGTTTTC
1 AAATTAAGTTTTC
39209222 AAACTTAA
1 AAA-TTAA
39209230 ACTATTTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (13 bp):
AAATTAAGTTTTC
Found at i:39213574 original size:21 final size:22
Alignment explanation
Indices: 39213550--39213594 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
39213540 AGAAAAAGAG
39213550 AAATACAAAAAAG-AATAG-ATC
1 AAAT-CAAAAAAGAAATAGAATC
*
39213571 AAATCAAAAAGGAAATAGAATC
1 AAATCAAAAAAGAAATAGAATC
39213593 AA
1 AA
39213595 CAATTTGCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 7 0.33
21 9 0.43
22 5 0.24
ACGTcount: A:0.67, C:0.09, G:0.11, T:0.13
Consensus pattern (22 bp):
AAATCAAAAAAGAAATAGAATC
Found at i:39216476 original size:35 final size:34
Alignment explanation
Indices: 39216392--39216665 Score: 308
Period size: 35 Copynumber: 8.1 Consensus size: 34
39216382 GTCTAAAAAG
* * * *
39216392 AAATAATACATGAACAGGAGAGATTCCCTACAA-G
1 AAATAAT-CGTGAACAGGAAAGATTCCCTGCAACA
*
39216426 AAATGAT-GTGAACAGGAAAGATTCCCTGCAACA
1 AAATAATCGTGAACAGGAAAGATTCCCTGCAACA
* *
39216459 AAATAATCCGTGAACAGGAGAGATTCCCTGCAA-G
1 AAATAAT-CGTGAACAGGAAAGATTCCCTGCAACA
* *
39216493 AAATGAT-GTGAACAGGAAAGATTCCCTGTAACA
1 AAATAATCGTGAACAGGAAAGATTCCCTGCAACA
* *
39216526 AAATAATGTGTGAACAGGAGAGATTCCCTGCAACA
1 AAATAAT-CGTGAACAGGAAAGATTCCCTGCAACA
* *
39216561 AAATAATGCGTGAACAGGAGAGATTCCCTGCAA-G
1 AAATAAT-CGTGAACAGGAAAGATTCCCTGCAACA
*
39216595 AAATGAT-GTGAACAGGAAAGATTCCCTGCAACA
1 AAATAATCGTGAACAGGAAAGATTCCCTGCAACA
* * *
39216628 GAATAATGCGTGAACAGGAAATATTCCCTGCAAGA
1 AAATAAT-CGTGAACAGGAAAGATTCCCTGCAACA
39216663 AAA
1 AAA
39216666 GACAAGTGAA
Statistics
Matches: 206, Mismatches: 25, Indels: 17
0.83 0.10 0.07
Matches are distributed among these distances:
32 66 0.32
33 17 0.08
34 18 0.09
35 105 0.51
ACGTcount: A:0.42, C:0.18, G:0.22, T:0.19
Consensus pattern (34 bp):
AAATAATCGTGAACAGGAAAGATTCCCTGCAACA
Found at i:39216500 original size:67 final size:67
Alignment explanation
Indices: 39216392--39216665 Score: 331
Period size: 67 Copynumber: 4.0 Consensus size: 67
39216382 GTCTAAAAAG
* * *
39216392 AAATAATACATGAACAGGAGAGATTCCCTACAAGAAATGAT-GTGAACAGGAAAGATTCCCTGCA
1 AAATAAT-CGTGAACAGGAGAGATTCCCTGCAAGAAATAATCGTGAACAGGAAAGATTCCCTGCA
39216456 ACA
65 ACA
* *
39216459 AAATAATCCGTGAACAGGAGAGATTCCCTGCAAGAAATGAT-GTGAACAGGAAAGATTCCCTGTA
1 AAATAAT-CGTGAACAGGAGAGATTCCCTGCAAGAAATAATCGTGAACAGGAAAGATTCCCTGCA
39216523 ACA
65 ACA
* * *
39216526 AAATAATGTGTGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTG
1 AAATAAT-CGTGAACAGGAGAGATTCCCTGCAA-GAAATAAT-CGTGAACAGGAAAGATTCCCTG
*
39216591 CAA-G
63 CAACA
* * * *
39216595 AAATGAT-GTGAACAGGAAAGATTCCCTGCAACAGAATAATGCGTGAACAGGAAATATTCCCTGC
1 AAATAATCGTGAACAGGAGAGATTCCCTGCAAGA-AATAAT-CGTGAACAGGAAAGATTCCCTGC
*
39216659 AAGA
64 AACA
39216663 AAA
1 AAA
39216666 GACAAGTGAA
Statistics
Matches: 185, Mismatches: 17, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
66 1 0.01
67 147 0.79
68 9 0.05
69 6 0.03
70 22 0.12
ACGTcount: A:0.42, C:0.18, G:0.22, T:0.19
Consensus pattern (67 bp):
AAATAATCGTGAACAGGAGAGATTCCCTGCAAGAAATAATCGTGAACAGGAAAGATTCCCTGCAA
CA
Found at i:39216575 original size:102 final size:102
Alignment explanation
Indices: 39216402--39216665 Score: 410
Period size: 102 Copynumber: 2.6 Consensus size: 102
39216392 AAATAATACA
* *
39216402 TGAACAGGAGAGATTCCC--T-ACAAGA-AATGATGTGAACAGGAAAGATTCCCTGCAACAAAAT
1 TGAACAGGAAAGATTCCCTGTAACAAAATAATG-TGTGAACAGGAAAGATTCCCTGCAACAAAAT
39216463 AATCCGTGAACAGGAGAGATTCCCTGCAAGAAATGATG
65 AATCCGTGAACAGGAGAGATTCCCTGCAAGAAATGATG
*
39216501 TGAACAGGAAAGATTCCCTGTAACAAAATAATGTGTGAACAGGAGAGATTCCCTGCAACAAAATA
1 TGAACAGGAAAGATTCCCTGTAACAAAATAATGTGTGAACAGGAAAGATTCCCTGCAACAAAATA
*
39216566 ATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGATG
66 ATCCGTGAACAGGAGAGATTCCCTGCAAGAAATGATG
* * * * *
39216603 TGAACAGGAAAGATTCCCTGCAACAGAATAATGCGTGAACAGGAAATATTCCCTGCAAGAAAA
1 TGAACAGGAAAGATTCCCTGTAACAAAATAATGTGTGAACAGGAAAGATTCCCTGCAACAAAA
39216666 GACAAGTGAA
Statistics
Matches: 151, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
99 17 0.11
101 1 0.01
102 129 0.85
103 4 0.03
ACGTcount: A:0.41, C:0.18, G:0.23, T:0.19
Consensus pattern (102 bp):
TGAACAGGAAAGATTCCCTGTAACAAAATAATGTGTGAACAGGAAAGATTCCCTGCAACAAAATA
ATCCGTGAACAGGAGAGATTCCCTGCAAGAAATGATG
Found at i:39216975 original size:13 final size:13
Alignment explanation
Indices: 39216957--39216990 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
39216947 TGCATTTACA
39216957 AAATTAAGTTTTC
1 AAATTAAGTTTTC
39216970 AAATTAAGTTTTC
1 AAATTAAGTTTTC
39216983 AAACTTAA
1 AAA-TTAA
39216991 ACTATTTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (13 bp):
AAATTAAGTTTTC
Found at i:39217101 original size:14 final size:13
Alignment explanation
Indices: 39217066--39217099 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
39217056 AGAAAATAGT
39217066 TTAAGTTTGAAAAC
1 TTAA-TTTGAAAAC
39217080 TTAATTTGAAAAC
1 TTAATTTGAAAAC
39217093 TTAATTT
1 TTAATTT
39217100 TGTAAATGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (13 bp):
TTAATTTGAAAAC
Found at i:39244410 original size:28 final size:27
Alignment explanation
Indices: 39244333--39244414 Score: 91
Period size: 27 Copynumber: 3.1 Consensus size: 27
39244323 TATTTTTTTT
* *
39244333 AAATTAATTAA-TAGTTTTAGGGTTTA
1 AAATTAATTAATTAGGTTTAGGATTTA
*
39244359 ATAATTAATT-ATTAAGTTTA--ATTTA
1 A-AATTAATTAATTAGGTTTAGGATTTA
39244384 AAATTAATTAATTAGGGTTTAGGATTTA
1 AAATTAATTAATTA-GGTTTAGGATTTA
39244412 AAA
1 AAA
39244415 AATTGTGTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
24 8 0.17
25 9 0.20
26 7 0.15
27 14 0.30
28 8 0.17
ACGTcount: A:0.43, C:0.00, G:0.12, T:0.45
Consensus pattern (27 bp):
AAATTAATTAATTAGGTTTAGGATTTA
Found at i:39248139 original size:40 final size:39
Alignment explanation
Indices: 39247950--39248132 Score: 201
Period size: 40 Copynumber: 4.6 Consensus size: 39
39247940 TGAATGATGT
* * * *
39247950 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
39247990 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
39248030 CCGGGCTAAG-CCCGAAGGTATTTGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
39248068 CCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
39248108 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
39248133 AACGAGTGCT
Statistics
Matches: 122, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 9 0.07
39 49 0.40
40 56 0.46
41 8 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:39256180 original size:40 final size:40
Alignment explanation
Indices: 39255990--39256173 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
39255980 TGAATGATGT
* * * *
39255990 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAC
* * * * **
39256030 CCGGACTAAGAT-TCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACCAAAC
*
39256070 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAC
* *
39256109 CCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCA-AAC
*
39256149 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
39256174 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
39 33 0.28
40 77 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAC
Found at i:39256195 original size:79 final size:78
Alignment explanation
Indices: 39256043--39256206 Score: 181
Period size: 79 Copynumber: 2.1 Consensus size: 78
39256033 GACTAAGATT
* **
39256043 CGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 CGAAGGCAATTGTGCGAGATACTAA-TCCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
*
39256108 CCCGGGTTAAGTCC
65 CCCGGGTTAAATCC
* *
39256122 CGAAGGCAATTGTGCGAGTTACCATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CGAAGGCAATTGTGCGAGATA-C-TAATCCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CT
* * *
39256185 ATATCC-GGTTAAATTC
62 AAACCCGGGTTAAATCC
39256201 CGAAGG
1 CGAAGG
39256207 TACGTGATTT
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
79 44 0.61
80 25 0.35
81 3 0.04
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (78 bp):
CGAAGGCAATTGTGCGAGATACTAATCCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAAC
CCGGGTTAAATCC
Found at i:39260502 original size:21 final size:21
Alignment explanation
Indices: 39260478--39260517 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
39260468 TCAGCACACT
*
39260478 CAGATACATCCACAACAAAGC
1 CAGATACACCCACAACAAAGC
* *
39260499 CAGATGCACCCACACCAAA
1 CAGATACACCCACAACAAA
39260518 ATCAGACGCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.38, G:0.10, T:0.07
Consensus pattern (21 bp):
CAGATACACCCACAACAAAGC
Found at i:39271359 original size:24 final size:26
Alignment explanation
Indices: 39271332--39271380 Score: 75
Period size: 24 Copynumber: 1.9 Consensus size: 26
39271322 TTGTTATAAA
39271332 AAAATTATA-AAAT-AAAAATTAATT
1 AAAATTATATAAATAAAAAATTAATT
39271356 AAAATTATATAAATGAAAAAATTAA
1 AAAATTATATAAAT-AAAAAATTAA
39271381 ATAATATTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 9 0.41
25 4 0.18
27 9 0.41
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (26 bp):
AAAATTATATAAATAAAAAATTAATT
Found at i:39272830 original size:18 final size:18
Alignment explanation
Indices: 39272788--39272830 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
39272778 GCCCATTCCG
*
39272788 AAGTATATATATATACAT
1 AAGTATGTATATATACAT
39272806 ATA-TATGTATATATACAT
1 A-AGTATGTATATATACAT
39272824 AAGTATG
1 AAGTATG
39272831 CCCATTCGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 1 0.05
18 20 0.91
19 1 0.05
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.40
Consensus pattern (18 bp):
AAGTATGTATATATACAT
Found at i:39273353 original size:27 final size:28
Alignment explanation
Indices: 39273269--39273364 Score: 122
Period size: 27 Copynumber: 3.4 Consensus size: 28
39273259 CATGAGATTG
* * * * *
39273269 GCACTAAATGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
39273298 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
39273326 GCACCAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
39273353 GCACTAAGTGTG
1 GCACTAAGTGTG
39273365 TGGACTTAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 22 0.37
28 21 0.35
29 17 0.28
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:39273379 original size:29 final size:27
Alignment explanation
Indices: 39273297--39273380 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
39273287 TAAATTGTAC
* * *
39273297 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACCAAGTGTGCGA-CTTAATTATAT
* *
39273325 AGCACCAAGTGTGCGAGTTGATTATAT
1 AGCACCAAGTGTGCGACTTAATTATAT
* *
39273352 AGCACTAAGTGTGTGGACTTAATATATAT
1 AGCACCAAGTGTG-CGACTTAAT-TATAT
39273381 TTTTGAATCA
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 22 0.46
28 21 0.44
29 5 0.10
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (27 bp):
AGCACCAAGTGTGCGACTTAATTATAT
Found at i:39285816 original size:23 final size:22
Alignment explanation
Indices: 39285776--39285827 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
39285766 AACCTCCGTT
*
39285776 TCTTCTCTCTTTTCAAACGCCTC
1 TCTTCCCT-TTTTCAAACGCCTC
* *
39285799 TCGTTCCCTTTTTGAAACGTCTC
1 TC-TTCCCTTTTTCAAACGCCTC
39285822 TCTTCC
1 TCTTCC
39285828 TTCCTTTGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
22 4 0.16
23 16 0.64
24 5 0.20
ACGTcount: A:0.12, C:0.37, G:0.08, T:0.44
Consensus pattern (22 bp):
TCTTCCCTTTTTCAAACGCCTC
Found at i:39285936 original size:30 final size:30
Alignment explanation
Indices: 39285902--39285958 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
39285892 CTTCTGATTT
*
39285902 AATTCGTCGTCTCGTCGTTCTAAATTATCC
1 AATTCGTCGTCTCATCGTTCTAAATTATCC
39285932 AATTCGTCGTCTCATCGTTCTAAATTA
1 AATTCGTCGTCTCATCGTTCTAAATTA
39285959 CCTTTCTGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.23, C:0.25, G:0.12, T:0.40
Consensus pattern (30 bp):
AATTCGTCGTCTCATCGTTCTAAATTATCC
Found at i:39296962 original size:41 final size:40
Alignment explanation
Indices: 39296801--39296963 Score: 209
Period size: 41 Copynumber: 4.0 Consensus size: 40
39296791 TTATTCTTTG
* * *
39296801 AAATGCACATACGTGTCCCTGTTTGTACTTCAGTACCCTT
1 AAATGCACATACGTGCCCCTGTTCGTACTTCAGTACCCCT
*
39296841 AAAATGCACATACGTGCCCCTGTTCGTACTTCAGTACACCT
1 -AAATGCACATACGTGCCCCTGTTCGTACTTCAGTACCCCT
** * *
39296882 GAAATGCACATGTGTTCCCCTGTTCGTACTTCGGTACCCCT
1 -AAATGCACATACGTGCCCCTGTTCGTACTTCAGTACCCCT
* *
39296923 AAATTGAACATACGTGCCCCTGTTTGTACTTCAGTACCCCT
1 AAA-TGCACATACGTGCCCCTGTTCGTACTTCAGTACCCCT
39296964 GAATAGTACC
Statistics
Matches: 105, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 3 0.03
41 102 0.97
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.31
Consensus pattern (40 bp):
AAATGCACATACGTGCCCCTGTTCGTACTTCAGTACCCCT
Found at i:39296984 original size:82 final size:82
Alignment explanation
Indices: 39296799--39296984 Score: 239
Period size: 82 Copynumber: 2.3 Consensus size: 82
39296789 AATTATTCTT
* * * * *
39296799 TGAAATGCACATACGTGTCCCTGTTTGTACTTCAGTACCCTTAAAATGCACATACGTGCCCCTGT
1 TGAAATGCACATATGTGCCCCTGTTCGTACTTCAGTACCCCTAAAATGAACATACGTGCCCCTGT
39296864 TCGTACTTCAGTACACC
66 TCGTACTTCAGTACACC
* * * *
39296881 TGAAATGCACATGTGTTCCCCTGTTCGTACTTCGGTACCCCTAAATTGAACATACGTGCCCCTGT
1 TGAAATGCACATATGTGCCCCTGTTCGTACTTCAGTACCCCTAAAATGAACATACGTGCCCCTGT
* *
39296946 TTGTACTTCAGTACCCC
66 TCGTACTTCAGTACACC
* *
39296963 TG-AATAGTACCTATGTGCCCCT
1 TGAAAT-GCACATATGTGCCCCT
39296985 ATTTACACTC
Statistics
Matches: 88, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 3 0.03
82 85 0.97
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.31
Consensus pattern (82 bp):
TGAAATGCACATATGTGCCCCTGTTCGTACTTCAGTACCCCTAAAATGAACATACGTGCCCCTGT
TCGTACTTCAGTACACC
Found at i:39297278 original size:14 final size:14
Alignment explanation
Indices: 39297261--39297296 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
39297251 GTAGTGTTGA
39297261 GTTATTC-AGATTTT
1 GTTATTCGA-ATTTT
39297275 GTTATTCGAATTTT
1 GTTATTCGAATTTT
39297289 GTTATTCG
1 GTTATTCG
39297297 GGTTTCTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 20 0.95
15 1 0.05
ACGTcount: A:0.19, C:0.08, G:0.17, T:0.56
Consensus pattern (14 bp):
GTTATTCGAATTTT
Found at i:39298473 original size:18 final size:17
Alignment explanation
Indices: 39298445--39299188 Score: 266
Period size: 16 Copynumber: 46.3 Consensus size: 17
39298435 TAAGACAATA
*
39298445 AATTTCATAACTTACGT
1 AATTTCATAACTTACAT
39298462 AATTTACATAACTTACAT
1 AATTT-CATAACTTACAT
* *
39298480 AATAT-ATAACGTACAT
1 AATTTCATAACTTACAT
**
39298496 AATTT-A-AAGAT-CA-
1 AATTTCATAACTTACAT
*
39298509 AATATCATAACTTACAT
1 AATTTCATAACTTACAT
*
39298526 -TTCTTACATAACTTACAT
1 AAT-TT-CATAACTTACAT
39298544 AATTTACATAACTTACAT
1 AATTT-CATAACTTACAT
*
39298562 AA-TACATCAA-TTACAT
1 AATTTCAT-AACTTACAT
* * *
39298578 AATTT-A-AA--GAGAA
1 AATTTCATAACTTACAT
39298591 AATTTCATAACTTACAT
1 AATTTCATAACTTACAT
* * *
39298608 AA-TACATAACGTATAT
1 AATTTCATAACTTACAT
* **
39298624 AAGTT-A-AAGAT-CA-
1 AATTTCATAACTTACAT
*
39298637 AATATCATAACTTACAT
1 AATTTCATAACTTACAT
*
39298654 -TTCTTACATAACTTACAT
1 AAT-TT-CATAACTTACAT
39298672 AATTTGCATAACTTACAT
1 AATTT-CATAACTTACAT
* *
39298690 AA-TACATAACGTACAT
1 AATTTCATAACTTACAT
* **
39298706 AAGTT-A-AAGAT-CA-
1 AATTTCATAACTTACAT
* **
39298719 AATATCATGTTCTTACAT
1 AATTTCAT-AACTTACAT
*
39298737 AATTTACATAACTTAAAT
1 AATTT-CATAACTTACAT
39298755 AATTTACATAACTTACAT
1 AATTT-CATAACTTACAT
*
39298773 AA-TACATCAA-TTACAT
1 AATTTCAT-AACTTACAT
* **
39298789 AATAT-A-AAGAT-CA-
1 AATTTCATAACTTACAT
39298802 AATTTCATAACTTACAT
1 AATTTCATAACTTACAT
*
39298819 AA-TACATAACTTACAT
1 AATTTCATAACTTACAT
* * *
39298835 AATTT-A-AA--GAGAA
1 AATTTCATAACTTACAT
39298848 AATTTCATAACTTACAT
1 AATTTCATAACTTACAT
* * *
39298865 AA-TACATAACGTATAT
1 AATTTCATAACTTACAT
* **
39298881 AAGTT-A-AAGAT-CA-
1 AATTTCATAACTTACAT
*
39298894 AATATCATAACTTACAT
1 AATTTCATAACTTACAT
*
39298911 -TTCTTACATAACTTACAT
1 AAT-TT-CATAACTTACAT
39298929 AATTTGCATAACTTACAT
1 AATTT-CATAACTTACAT
* *
39298947 AA-TACATAACGTACAT
1 AATTTCATAACTTACAT
* **
39298963 AAGTT-A-AAGAT-CA-
1 AATTTCATAACTTACAT
* **
39298976 AATATCATGTTCTTACAT
1 AATTTCAT-AACTTACAT
39298994 AATTTACATAACTTACAT
1 AATTT-CATAACTTACAT
39299012 AATTTACATAACTTACAT
1 AATTT-CATAACTTACAT
*
39299030 AA-TACATCAA-TTACAT
1 AATTTCAT-AACTTACAT
* **
39299046 AATAT-A-AAGAT-CA-
1 AATTTCATAACTTACAT
39299059 AATTTCATAACTTACAT
1 AATTTCATAACTTACAT
*
39299076 AA-TACATAACTTACAT
1 AATTTCATAACTTACAT
**
39299092 AATTT-A-AAGAT-CA-
1 AATTTCATAACTTACAT
*
39299105 AATTTCATAA-TAAACA-
1 AATTTCATAACT-TACAT
* *
39299121 ACTTACATAACTTACAT
1 AATTTCATAACTTACAT
* *
39299138 AA-TACATAAGTTACAT
1 AATTTCATAACTTACAT
39299154 AATTT-A-AA--TATCA-
1 AATTTCATAACTTA-CAT
*
39299167 AATTTTATAACTTACAT
1 AATTTCATAACTTACAT
39299184 AATTT
1 AATTT
39299189 AAAGATTTTA
Statistics
Matches: 536, Mismatches: 114, Indels: 154
0.67 0.14 0.19
Matches are distributed among these distances:
13 50 0.09
14 33 0.06
15 47 0.09
16 185 0.35
17 52 0.10
18 160 0.30
19 9 0.02
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.35
Consensus pattern (17 bp):
AATTTCATAACTTACAT
Found at i:39298540 original size:9 final size:9
Alignment explanation
Indices: 39298514--39299155 Score: 176
Period size: 9 Copynumber: 70.6 Consensus size: 9
39298504 GATCAAATAT
39298514 CATAACTTA
1 CATAACTTA
**
39298523 CATTTCTTA
1 CATAACTTA
39298532 CATAACTTA
1 CATAACTTA
*
39298541 CATAATTTA
1 CATAACTTA
39298550 CATAACTTA
1 CATAACTTA
39298559 CATAA--TA
1 CATAACTTA
39298566 CATCAA-TTA
1 CAT-AACTTA
*
39298575 CATAATTTAAA
1 CATAACTT--A
* * * *
39298586 GAGAAAATTT
1 CA-TAACTTA
39298596 CATAACTTA
1 CATAACTTA
39298605 CATAA--TA
1 CATAACTTA
*
39298612 CATAACGTA
1 CATAACTTA
* *
39298621 TATAAGTTAAA
1 CATAACTT--A
* *
39298632 GATCAA-ATA
1 CAT-AACTTA
39298641 TCATAACTTA
1 -CATAACTTA
**
39298651 CATTTCTTA
1 CATAACTTA
39298660 CATAACTTA
1 CATAACTTA
* *
39298669 CATAATTTG
1 CATAACTTA
39298678 CATAACTTA
1 CATAACTTA
39298687 CATAA--TA
1 CATAACTTA
*
39298694 CATAACGTA
1 CATAACTTA
*
39298703 CATAAGTTAAA
1 CATAACTT--A
* *
39298714 GATCAA-ATA
1 CAT-AACTTA
**
39298723 TCATGTTCTTA
1 -CAT-AACTTA
*
39298734 CATAATTTA
1 CATAACTTA
39298743 CATAACTTA
1 CATAACTTA
* *
39298752 AATAATTTA
1 CATAACTTA
39298761 CATAACTTA
1 CATAACTTA
39298770 CATAA--TA
1 CATAACTTA
39298777 CATCAA-TTA
1 CAT-AACTTA
39298786 CATAA-TATAAA
1 CATAACT-T--A
* * *
39298797 GATCAAATTT
1 CAT-AACTTA
39298807 CATAACTTA
1 CATAACTTA
39298816 CATAA--TA
1 CATAACTTA
39298823 CATAACTTA
1 CATAACTTA
*
39298832 CATAATTTAAA
1 CATAACTT--A
* * * *
39298843 GAGAAAATTT
1 CA-TAACTTA
39298853 CATAACTTA
1 CATAACTTA
39298862 CATAA--TA
1 CATAACTTA
*
39298869 CATAACGTA
1 CATAACTTA
* *
39298878 TATAAGTTAAA
1 CATAACTT--A
* *
39298889 GATCAA-ATA
1 CAT-AACTTA
39298898 TCATAACTTA
1 -CATAACTTA
**
39298908 CATTTCTTA
1 CATAACTTA
39298917 CATAACTTA
1 CATAACTTA
* *
39298926 CATAATTTG
1 CATAACTTA
39298935 CATAACTTA
1 CATAACTTA
39298944 CATAA--TA
1 CATAACTTA
*
39298951 CATAACGTA
1 CATAACTTA
*
39298960 CATAAGTTAAA
1 CATAACTT--A
* *
39298971 GATCAA-ATA
1 CAT-AACTTA
**
39298980 TCATGTTCTTA
1 -CAT-AACTTA
*
39298991 CATAATTTA
1 CATAACTTA
39299000 CATAACTTA
1 CATAACTTA
*
39299009 CATAATTTA
1 CATAACTTA
39299018 CATAACTTA
1 CATAACTTA
39299027 CATAA--TA
1 CATAACTTA
39299034 CATCAA-TTA
1 CAT-AACTTA
39299043 CATAA-TATAAA
1 CATAACT-T--A
* * *
39299054 GATCAAATTT
1 CAT-AACTTA
39299064 CATAACTTA
1 CATAACTTA
39299073 CATAA--TA
1 CATAACTTA
39299080 CATAACTTA
1 CATAACTTA
*
39299089 CATAATTTAAA
1 CATAACTT--A
* * *
39299100 GATCAAATTT
1 CAT-AACTTA
39299110 CATAA--TA
1 CATAACTTA
* *
39299117 AACAACTTA
1 CATAACTTA
39299126 CATAACTTA
1 CATAACTTA
39299135 CATAA--TA
1 CATAACTTA
*
39299142 CATAAGTTA
1 CATAACTTA
39299151 CATAA
1 CATAA
39299156 TTTAAATATC
Statistics
Matches: 466, Mismatches: 105, Indels: 124
0.67 0.15 0.18
Matches are distributed among these distances:
7 68 0.15
8 14 0.03
9 297 0.64
10 26 0.06
11 33 0.07
12 26 0.06
13 2 0.00
ACGTcount: A:0.47, C:0.15, G:0.04, T:0.34
Consensus pattern (9 bp):
CATAACTTA
Found at i:39298551 original size:82 final size:82
Alignment explanation
Indices: 39298450--39298607 Score: 246
Period size: 82 Copynumber: 1.9 Consensus size: 82
39298440 CAATAAATTT
* * **
39298450 CATAACTTACGTAATTTACATAACTTACATAATATAT-AACGTACATAATTTAAAGATCAAATAT
1 CATAACTTACATAATTTACATAACTTACATAATACATCAA-GTACATAATTTAAAGAGAAAATAT
39298514 CATAACTTACATTTCTTA
65 CATAACTTACATTTCTTA
* *
39298532 CATAACTTACATAATTTACATAACTTACATAATACATCAATTACATAATTTAAAGAGAAAATTTC
1 CATAACTTACATAATTTACATAACTTACATAATACATCAAGTACATAATTTAAAGAGAAAATATC
39298597 ATAACTTACAT
66 ATAACTTACAT
39298608 AATACATAAC
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
82 67 0.97
83 2 0.03
ACGTcount: A:0.46, C:0.16, G:0.03, T:0.35
Consensus pattern (82 bp):
CATAACTTACATAATTTACATAACTTACATAATACATCAAGTACATAATTTAAAGAGAAAATATC
ATAACTTACATTTCTTA
Found at i:39298608 original size:46 final size:46
Alignment explanation
Indices: 39298544--39299140 Score: 470
Period size: 46 Copynumber: 13.8 Consensus size: 46
39298534 TAACTTACAT
**
39298544 AATTTACATAACTTACATAATACATCAA-TTACATAATTTAAAGAGAA
1 AATTT-CATAACTTACATAATACAT-AACTTACATAATTTAAAGATCA
* * *
39298591 AATTTCATAACTTACATAATACATAACGTATATAAGTTAAAGATCA
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
* * *
39298637 AATATCATAACTTACAT--T---T--CTTACATAACTT--ACAT-A
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
* * * *
39298673 ATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCA
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
* * * *
39298719 AATATCAT--GTT-C-T--TACATAATTTACATAACTT-AA-AT-A
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
* * *
39298756 ATTTACATAACTTACATAATACATCAA-TTACATAATATAAAGATCA
1 AATTTCATAACTTACATAATACAT-AACTTACATAATTTAAAGATCA
**
39298802 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGAGAA
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
* * *
39298848 AATTTCATAACTTACATAATACATAACGTATATAAGTTAAAGATCA
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
* * *
39298894 AATATCATAACTTACAT--T---T--CTTACATAACTT--ACAT-A
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
* * * *
39298930 ATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCA
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
* * * * *
39298976 AATATCAT--GTT-C-T--TACATAATTTACATAACTT--ACAT-A
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
* * *
39299013 ATTTACATAACTTACATAATACATCAA-TTACATAATATAAAGATCA
1 AATTTCATAACTTACATAATACAT-AACTTACATAATTTAAAGATCA
39299059 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
* *
39299105 AATTTCATAA-TAAACA-ACTTACATAACTTACATAAT
1 AATTTCATAACT-TACATA-ATACATAACTTACATAAT
39299141 ACATAAGTTA
Statistics
Matches: 435, Mismatches: 70, Indels: 91
0.73 0.12 0.15
Matches are distributed among these distances:
36 30 0.07
37 18 0.04
38 7 0.02
39 24 0.06
40 34 0.08
41 6 0.01
42 2 0.00
43 50 0.11
44 12 0.03
45 19 0.04
46 228 0.52
47 5 0.01
ACGTcount: A:0.47, C:0.15, G:0.04, T:0.34
Consensus pattern (46 bp):
AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
Found at i:39298633 original size:128 final size:128
Alignment explanation
Indices: 39298462--39298972 Score: 662
Period size: 128 Copynumber: 4.0 Consensus size: 128
39298452 TAACTTACGT
* * *
39298462 AATTTACATAACTTACATAATATATAACGTACATAATTTAAAGATCAAATATCATAACTTACATT
1 AATTT-CATAACTTACATAATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATT
* * *
39298527 TCTTACATAACTTACATAATTTACATAACTTACATAATACATCAA-TTACATAATTTAAAGAGAA
65 TCTTACATAACTTACATAATTTGCATAACTTACATAATACAT-AACGTACATAAGTTAAAGAGAA
39298591 AATTTCATAACTTACATAATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTT
1 AATTTCATAACTTACATAATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTT
**
39298656 CTTACATAACTTACATAATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCA
66 CTTACATAACTTACATAATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGAGAA
* ** * * * * *
39298719 AATATCATGTTCTTACATAATTTACATAACTTAAATAA-TT-TACAT-AACT-TACATAA--TAC
1 AATTTCAT-AACTTACATAA--TACATAACGTATATAAGTTAAAGATCAAATAT-CATAACTTAC
*** * * *
39298778 ATCAATTACATAA-TATAAAGATCAAATTT-CATAACTTACATAATACATAACTTACATAATTTA
62 ATTTCTTACATAACT-T--ACAT--AATTTGCATAACTTACATAATACATAACGTACATAAGTTA
39298841 AAGAGAA
122 AAGAGAA
39298848 AATTTCATAACTTACATAATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTT
1 AATTTCATAACTTACATAATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTT
39298913 CTTACATAACTTACATAATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGA
66 CTTACATAACTTACATAATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGA
39298973 TCAAATATCA
Statistics
Matches: 326, Mismatches: 38, Indels: 37
0.81 0.09 0.09
Matches are distributed among these distances:
125 1 0.00
126 28 0.09
127 10 0.03
128 178 0.55
129 72 0.22
130 8 0.02
131 28 0.09
132 1 0.00
ACGTcount: A:0.47, C:0.15, G:0.04, T:0.34
Consensus pattern (128 bp):
AATTTCATAACTTACATAATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTT
CTTACATAACTTACATAATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGAGAA
Found at i:39298788 original size:83 final size:82
Alignment explanation
Indices: 39298591--39299097 Score: 622
Period size: 83 Copynumber: 6.1 Consensus size: 82
39298581 TTAAAGAGAA
*
39298591 AATTT-CATAACTTACATAATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACAT-
1 AATTTACATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATAACTTACATA
*
39298654 TTCTTACATAACTTACAT
66 AT-TTACATAACTTACAT
* **
39298672 AATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATGTTCTTACAT
1 AATTTACATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCAT-AACTTACAT
*
39298737 AATTTACATAACTTAAAT
65 AATTTACATAACTTACAT
* *
39298755 AATTTACATAACTTACATAATACATCAA-TTACATAA-TATAAAGATCAAATTTCATAACTTACA
1 AATTTACATAACTTACATAATACAT-AACGTACATAAGT-TAAAGATCAAATATCATAACTTACA
39298818 TAA--TACATAACTTACAT
64 TAATTTACATAACTTACAT
*
39298835 AATTTAAAGAGAAAATTTCATAACTTACATAATACATAACGTATATAAGTTAAAGATCAAATATC
1 AATTT---------A---CATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATC
*
39298900 ATAACTTACAT-TTCTTACATAACTTACAT
54 ATAACTTACATAAT-TTACATAACTTACAT
* **
39298929 AATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATGTTCTTACAT
1 AATTTACATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCAT-AACTTACAT
39298994 AATTTACATAACTTACAT
65 AATTTACATAACTTACAT
* *
39299012 AATTTACATAACTTACATAATACATCAA-TTACATAA-TATAAAGATCAAATTTCATAACTTACA
1 AATTTACATAACTTACATAATACAT-AACGTACATAAGT-TAAAGATCAAATATCATAACTTACA
39299075 TAA--TACATAACTTACAT
64 TAATTTACATAACTTACAT
39299092 AATTTA
1 AATTTA
39299098 AAGATCAAAT
Statistics
Matches: 375, Mismatches: 25, Indels: 53
0.83 0.06 0.12
Matches are distributed among these distances:
80 38 0.10
81 5 0.01
82 116 0.31
83 137 0.37
84 6 0.02
89 1 0.00
91 2 0.01
92 50 0.13
93 1 0.00
94 19 0.05
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.35
Consensus pattern (82 bp):
AATTTACATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATAACTTACATA
ATTTACATAACTTACAT
Found at i:39298813 original size:211 final size:210
Alignment explanation
Indices: 39298450--39298864 Score: 652
Period size: 211 Copynumber: 2.0 Consensus size: 210
39298440 CAATAAATTT
* * *
39298450 CATAACTTACGTAATTTACATAACTTACATAATATATAACGTACATAATTTAAAGATCAAATATC
1 CATAACTTACATAATTTACATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATC
* *
39298515 ATAACTTACATTTCTTACATAACTTACATAATTTACATAACTTACATAATACATCAATTACATAA
66 ATAACTTACATATCTTACATAACTTAAATAATTTACATAACTTACATAATACATCAATTACATAA
* * **
39298580 TTTAAAGAGAAAATTTCATAACTTACATAATACATAACGTATATAAGTTAAAGATCAAATATCAT
131 TATAAAGAGAAAATTTCATAACTTACATAATACATAACGTACATAAGTTAAAGAGAAAATATCAT
39298645 AACTTACATTTCTTA
196 AACTTACATTTCTTA
*
39298660 CATAACTTACATAATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATC
1 CATAACTTACATAATTTACATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATC
**
39298725 ATGTTCTTACATAAT-TTACATAACTTAAATAATTTACATAACTTACATAATACATCAATTACAT
66 AT-AACTTACAT-ATCTTACATAACTTAAATAATTTACATAACTTACATAATACATCAATTACAT
** * * *
39298789 AATATAAAGATCAAATTTCATAACTTACATAATACATAACTTACATAATTTAAAGAGAAAATTTC
129 AATATAAAGAGAAAATTTCATAACTTACATAATACATAACGTACATAAGTTAAAGAGAAAATATC
39298854 ATAACTTACAT
194 ATAACTTACAT
39298865 AATACATAAC
Statistics
Matches: 186, Mismatches: 17, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
210 63 0.34
211 122 0.66
212 1 0.01
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.35
Consensus pattern (210 bp):
CATAACTTACATAATTTACATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATC
ATAACTTACATATCTTACATAACTTAAATAATTTACATAACTTACATAATACATCAATTACATAA
TATAAAGAGAAAATTTCATAACTTACATAATACATAACGTACATAAGTTAAAGAGAAAATATCAT
AACTTACATTTCTTA
Found at i:39299062 original size:21 final size:21
Alignment explanation
Indices: 39299038--39299116 Score: 63
Period size: 21 Copynumber: 3.6 Consensus size: 21
39299028 ATAATACATC
39299038 AATTACATAATATAAAGATCA
1 AATTACATAATATAAAGATCA
*
39299059 AATTTCATAACT-TACATA-ATACA
1 AATTACATAA-TATA-A-AGAT-CA
*
39299082 TAACTTACATAATTTAAAGATCA
1 -AA-TTACATAATATAAAGATCA
*
39299105 AATTTCATAATA
1 AATTACATAATA
39299117 AACAACTTAC
Statistics
Matches: 46, Mismatches: 4, Indels: 16
0.70 0.06 0.24
Matches are distributed among these distances:
21 19 0.41
22 6 0.13
23 6 0.13
24 6 0.13
25 9 0.20
ACGTcount: A:0.51, C:0.13, G:0.03, T:0.34
Consensus pattern (21 bp):
AATTACATAATATAAAGATCA
Found at i:39299114 original size:83 final size:81
Alignment explanation
Indices: 39298854--39299130 Score: 314
Period size: 83 Copynumber: 3.4 Consensus size: 81
39298844 AGAAAATTTC
* * **
39298854 ATAACTTACATAATACAT-AACGTATATAAGTTAAAGATCAAATATCATAACTTACATTTCTTAC
1 ATAACTTACATAATACATCAACTTACATAAGTTAAAGATCAAATATCATAACTTACA--TAATAC
39298918 ATAACTTACATAATTT-G
64 ATAACTTACATAATTTAG
* **
39298935 CATAACTTACATAATACAT-AACGTACATAAGTTAAAGATCAAATATCATGTTCTTACATAATTT
1 -ATAACTTACATAATACATCAACTTACATAAGTTAAAGATCAAATATCAT-AACTTACATAA--T
*
39298999 ACATAACTTACATAATTTAC
62 ACATAACTTACATAATTTAG
*
39299019 ATAACTTACATAATACATCAA-TTACATAA-TATAAAGATCAAATTTCATAACTTACATAATACA
1 ATAACTTACATAATACATCAACTTACATAAGT-TAAAGATCAAATATCATAACTTACATAATACA
39299082 TAACTTACATAATTTAAAG
65 TAACTTACATAATTT--AG
* * *
39299101 ATCAAATTTCATAATA-AACAACTTACATAA
1 AT-AACTTACATAATACATCAACTTACATAA
39299131 CTTACATAAT
Statistics
Matches: 171, Mismatches: 14, Indels: 19
0.84 0.07 0.09
Matches are distributed among these distances:
80 19 0.11
81 1 0.01
82 64 0.37
83 85 0.50
84 2 0.01
ACGTcount: A:0.47, C:0.16, G:0.04, T:0.34
Consensus pattern (81 bp):
ATAACTTACATAATACATCAACTTACATAAGTTAAAGATCAAATATCATAACTTACATAATACAT
AACTTACATAATTTAG
Found at i:39299131 original size:257 final size:257
Alignment explanation
Indices: 39298544--39299114 Score: 1090
Period size: 257 Copynumber: 2.2 Consensus size: 257
39298534 TAACTTACAT
39298544 AATTTACATAACTTACATAATACATCAA-TTACATAATTTAAAGAGAAAATTTCATAACTTACAT
1 AATTT-CATAACTTACATAATACAT-AACTTACATAATTTAAAGAGAAAATTTCATAACTTACAT
39298608 AATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTTCTTACATAACTTACATA
64 AATACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTTCTTACATAACTTACATA
39298673 ATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATGTTCTTACATA
129 ATTTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATGTTCTTACATA
39298738 ATTTACATAACTTAAATAATTTACATAACTTACATAATACATCAATTACATAATATAAAGATCA
194 ATTTACATAACTTAAATAATTTACATAACTTACATAATACATCAATTACATAATATAAAGATCA
39298802 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGAGAAAATTTCATAACTTACATAA
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGAGAAAATTTCATAACTTACATAA
39298867 TACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTTCTTACATAACTTACATAAT
66 TACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTTCTTACATAACTTACATAAT
39298932 TTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATGTTCTTACATAAT
131 TTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATGTTCTTACATAAT
*
39298997 TTACATAACTTACATAATTTACATAACTTACATAATACATCAATTACATAATATAAAGATCA
196 TTACATAACTTAAATAATTTACATAACTTACATAATACATCAATTACATAATATAAAGATCA
**
39299059 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAA
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGAGAAAATTTCATAA
39299115 TAAACAACTT
Statistics
Matches: 309, Mismatches: 3, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
256 2 0.01
257 302 0.98
258 5 0.02
ACGTcount: A:0.47, C:0.15, G:0.04, T:0.34
Consensus pattern (257 bp):
AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGAGAAAATTTCATAACTTACATAA
TACATAACGTATATAAGTTAAAGATCAAATATCATAACTTACATTTCTTACATAACTTACATAAT
TTGCATAACTTACATAATACATAACGTACATAAGTTAAAGATCAAATATCATGTTCTTACATAAT
TTACATAACTTAAATAATTTACATAACTTACATAATACATCAATTACATAATATAAAGATCA
Found at i:39299367 original size:9 final size:9
Alignment explanation
Indices: 39299355--39299565 Score: 221
Period size: 9 Copynumber: 24.8 Consensus size: 9
39299345 AGACTTCAAC
39299355 AACTTACAT
1 AACTTACAT
39299364 AACTTACAT
1 AACTTACAT
* *
39299373 TA--TACAC
1 AACTTACAT
39299380 AACTTACAT
1 AACTTACAT
39299389 AACTTACAT
1 AACTTACAT
*
39299398 AACTTATAT
1 AACTTACAT
39299407 AACTTACAT
1 AACTTACAT
39299416 AACTTACAT
1 AACTTACAT
39299425 AACTTACAT
1 AACTTACAT
* *
39299434 -TC-TACAC
1 AACTTACAT
39299441 AACTTACAT
1 AACTTACAT
*
39299450 AACATACAT
1 AACTTACAT
*
39299459 AA--TACAC
1 AACTTACAT
39299466 AACTTACAT
1 AACTTACAT
*
39299475 AACATACAT
1 AACTTACAT
39299484 AA--TACAT
1 AACTTACAT
39299491 AACTTACAT
1 AACTTACAT
**
39299500 GGCTTACAT
1 AACTTACAT
39299509 AA--TACAT
1 AACTTACAT
*
39299516 AACTTACAG
1 AACTTACAT
39299525 AACTTACAT
1 AACTTACAT
*
39299534 AACTTATAT
1 AACTTACAT
39299543 AA--TACAT
1 AACTTACAT
39299550 AACTTACAT
1 AACTTACAT
*
39299559 AATTTAC
1 AACTTAC
39299566 TTAATATATA
Statistics
Matches: 167, Mismatches: 23, Indels: 24
0.78 0.11 0.11
Matches are distributed among these distances:
7 35 0.21
8 2 0.01
9 130 0.78
ACGTcount: A:0.45, C:0.21, G:0.01, T:0.32
Consensus pattern (9 bp):
AACTTACAT
Found at i:39299398 original size:34 final size:34
Alignment explanation
Indices: 39299355--39299565 Score: 170
Period size: 34 Copynumber: 6.2 Consensus size: 34
39299345 AGACTTCAAC
39299355 AACTTACATAACTTACATTATACACAACTTACAT
1 AACTTACATAACTTACATTATACACAACTTACAT
39299389 AACTTACATAACTT--A-TAT----AACTTACAT
1 AACTTACATAACTTACATTATACACAACTTACAT
*
39299416 AACTTACATAACTTACATTCTACACAACTTACAT
1 AACTTACATAACTTACATTATACACAACTTACAT
* *
39299450 AACATACATAA-TACACAACTTACATA-ACATACATAATACAT
1 AACTTACATAACT-TAC-A-TT--ATACACA-AC-T--TACAT
** * * *
39299491 AACTTACATGGCTTACATAATACATAACTTACAG
1 AACTTACATAACTTACATTATACACAACTTACAT
* * *
39299525 AACTTACATAACTTATATAATACATAACTTACAT
1 AACTTACATAACTTACATTATACACAACTTACAT
*
39299559 AATTTAC
1 AACTTAC
39299566 TTAATATATA
Statistics
Matches: 143, Mismatches: 16, Indels: 36
0.73 0.08 0.18
Matches are distributed among these distances:
27 23 0.16
29 1 0.01
30 2 0.01
31 3 0.02
32 1 0.01
33 1 0.01
34 75 0.52
35 1 0.01
36 3 0.02
37 8 0.06
38 6 0.04
39 2 0.01
40 1 0.01
41 15 0.10
42 1 0.01
ACGTcount: A:0.45, C:0.21, G:0.01, T:0.32
Consensus pattern (34 bp):
AACTTACATAACTTACATTATACACAACTTACAT
Found at i:39299445 original size:25 final size:25
Alignment explanation
Indices: 39299359--39299561 Score: 207
Period size: 25 Copynumber: 8.0 Consensus size: 25
39299349 TTCAACAACT
* *
39299359 TACATAACTTACATTA--TACACAA
1 TACATAACTTACATAACTTACATAA
*
39299382 CTTACATAACTTACATAACTTATATAA
1 --TACATAACTTACATAACTTACATAA
**
39299409 CTTACATAACTTACATAACTTACATTC
1 --TACATAACTTACATAACTTACATAA
* *
39299436 TACACAACTTACATAACATACATAA
1 TACATAACTTACATAACTTACATAA
* *
39299461 TACACAACTTACATAACATACATAA
1 TACATAACTTACATAACTTACATAA
**
39299486 TACATAACTTACATGGCTTACATAA
1 TACATAACTTACATAACTTACATAA
*
39299511 TACATAACTTACAGAACTTACATAA
1 TACATAACTTACATAACTTACATAA
*
39299536 CTTATATAA--TACATAACTTACATAA
1 --TACATAACTTACATAACTTACATAA
39299561 T
1 T
39299562 TTACTTAATA
Statistics
Matches: 155, Mismatches: 19, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
23 1 0.01
25 119 0.77
27 35 0.23
ACGTcount: A:0.46, C:0.21, G:0.01, T:0.32
Consensus pattern (25 bp):
TACATAACTTACATAACTTACATAA
Found at i:39301488 original size:21 final size:21
Alignment explanation
Indices: 39301462--39301532 Score: 106
Period size: 21 Copynumber: 3.4 Consensus size: 21
39301452 GTACAACTTA
*
39301462 AAGCAGAGGCAGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* * *
39301483 AAGCAGAGGCTGTAGTGAGAG
1 AAGCAGAGGCTGCAGCGAGGG
39301504 AAGCAGAGGCTGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
39301525 AAGCAGAG
1 AAGCAGAG
39301533 TAGAGCAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.34, C:0.15, G:0.45, T:0.06
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGGG
Found at i:39302103 original size:43 final size:43
Alignment explanation
Indices: 39301927--39302093 Score: 203
Period size: 43 Copynumber: 3.9 Consensus size: 43
39301917 TCACCAAACA
* *
39301927 ATAGCGACGTTTGTGGGAAAAGCGTCGCTAAAAGTCATGATCT
1 ATAGCGACGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCT
* * * *
39301970 ATAGC-ACTTTTGTGTGAAAAGCGTCGTTAAAGGTCATGATCT
1 ATAGCGACGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCT
* * * *
39302012 ATAGCGGCATTTAT-GAAACAAGCGCCGCTAAAGGTCATGATCT
1 ATAGCGACGTTTGTGGGAA-AAGCGCCGCTAAAGGTCATGATCT
* *
39302055 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATG
1 ATAGCGACGTTTGTGGGAAAAGCGCCGCTAAAGGTCATG
39302094 GCCTTTAGCG
Statistics
Matches: 106, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
42 40 0.38
43 63 0.59
44 3 0.03
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (43 bp):
ATAGCGACGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCT
Found at i:39303525 original size:36 final size:37
Alignment explanation
Indices: 39303450--39303526 Score: 86
Period size: 36 Copynumber: 2.1 Consensus size: 37
39303440 ATTATTTTTT
* ** *
39303450 ATTATAAAATATTATAGTATTATTTTAAATGTTTAAC
1 ATTATAAAATATTATAATATTATTAAAAATGTGTAAC
*
39303487 ATTA-AAAATATTATAATATTATTAAAGAAT-TGTGAC
1 ATTATAAAATATTATAATATTATTAAA-AATGTGTAAC
39303523 ATTA
1 ATTA
39303527 CTTAATTGTG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
36 27 0.79
37 7 0.21
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (37 bp):
ATTATAAAATATTATAATATTATTAAAAATGTGTAAC
Found at i:39303669 original size:10 final size:10
Alignment explanation
Indices: 39303656--39303705 Score: 55
Period size: 10 Copynumber: 4.8 Consensus size: 10
39303646 TATATATATG
39303656 ATAATATAAA
1 ATAATATAAA
*
39303666 ATAATATGAAG
1 ATAATAT-AAA
*
39303677 ATAAAAATAAA
1 AT-AATATAAA
*
39303688 ATAATATAAC
1 ATAATATAAA
39303698 ATAATATA
1 ATAATATA
39303706 TATAAATAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
10 21 0.64
11 8 0.24
12 4 0.12
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (10 bp):
ATAATATAAA
Found at i:39304040 original size:21 final size:21
Alignment explanation
Indices: 39304014--39304058 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
39304004 AATAAATATT
*
39304014 TTTAATAAT-TTTCTATAATTA
1 TTTAATAATATTT-AATAATTA
*
39304035 TTTAATAGTATTTAATAATTA
1 TTTAATAATATTTAATAATTA
39304056 TTT
1 TTT
39304059 TAAAAAAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (21 bp):
TTTAATAATATTTAATAATTA
Found at i:39310639 original size:48 final size:48
Alignment explanation
Indices: 39310583--39310680 Score: 187
Period size: 48 Copynumber: 2.0 Consensus size: 48
39310573 CTCAAATTTG
39310583 AATACCATTAGACTACTAACAAAGTCATACTCTAATTCAATATTATTC
1 AATACCATTAGACTACTAACAAAGTCATACTCTAATTCAATATTATTC
*
39310631 AATACCATTAGACTACTAACAAAGTCATACTCTAATTCGATATTATTC
1 AATACCATTAGACTACTAACAAAGTCATACTCTAATTCAATATTATTC
39310679 AA
1 AA
39310681 ACTTACTCTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.42, C:0.20, G:0.05, T:0.33
Consensus pattern (48 bp):
AATACCATTAGACTACTAACAAAGTCATACTCTAATTCAATATTATTC
Found at i:39311274 original size:5 final size:5
Alignment explanation
Indices: 39311264--39311319 Score: 112
Period size: 5 Copynumber: 11.2 Consensus size: 5
39311254 CCATGAACAT
39311264 TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA
1 TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA
39311314 TCATA T
1 TCATA T
39311320 TGTGTAATTG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 51 1.00
ACGTcount: A:0.39, C:0.20, G:0.00, T:0.41
Consensus pattern (5 bp):
TCATA
Found at i:39317925 original size:37 final size:37
Alignment explanation
Indices: 39317884--39317957 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
39317874 CTTCGCTTGG
39317884 GAAAATTTTGGTATTTTGAATGAATTAGGCCTTACTC
1 GAAAATTTTGGTATTTTGAATGAATTAGGCCTTACTC
39317921 GAAAATTTTGGTATTTTGAATGAATTAGGCCTTACTC
1 GAAAATTTTGGTATTTTGAATGAATTAGGCCTTACTC
39317958 TTGTTTAGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.41
Consensus pattern (37 bp):
GAAAATTTTGGTATTTTGAATGAATTAGGCCTTACTC
Found at i:39319007 original size:30 final size:30
Alignment explanation
Indices: 39318971--39319032 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
39318961 ATAATTAGGG
39318971 GTTAAATTTACATGTATAAATTATTATTGA
1 GTTAAATTTACATGTATAAATTATTATTGA
39319001 GTTAAATTTACATGTATAAATTATTATTGA
1 GTTAAATTTACATGTATAAATTATTATTGA
39319031 GT
1 GT
39319033 CTACTTTCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.39, C:0.03, G:0.11, T:0.47
Consensus pattern (30 bp):
GTTAAATTTACATGTATAAATTATTATTGA
Found at i:39325435 original size:17 final size:17
Alignment explanation
Indices: 39325382--39325438 Score: 50
Period size: 17 Copynumber: 3.5 Consensus size: 17
39325372 TAATCACTTT
*
39325382 AATATTAAATT-AATAA
1 AATATTAAATTAAATTA
*
39325398 AATACT--ATTAAGA-TA
1 AATATTAAATTAA-ATTA
*
39325413 AGTATTAAATTAAATTA
1 AATATTAAATTAAATTA
39325430 AATATTAAA
1 AATATTAAA
39325439 CTATTAAACT
Statistics
Matches: 31, Mismatches: 5, Indels: 9
0.69 0.11 0.20
Matches are distributed among these distances:
14 3 0.10
15 6 0.19
16 7 0.23
17 15 0.48
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.37
Consensus pattern (17 bp):
AATATTAAATTAAATTA
Found at i:39341122 original size:14 final size:14
Alignment explanation
Indices: 39341081--39341126 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
39341071 ATGCAAAATT
39341081 AAGAGAAAAA-GAAG
1 AAGA-AAAAAGGAAG
* *
39341095 AA-AGAAAAGAAAG
1 AAGAAAAAAGGAAG
39341108 AAGAAAAAAGGAAG
1 AAGAAAAAAGGAAG
39341122 AAGAA
1 AAGAA
39341127 CACACGGCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
12 4 0.15
13 6 0.23
14 16 0.62
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (14 bp):
AAGAAAAAAGGAAG
Found at i:39343420 original size:40 final size:41
Alignment explanation
Indices: 39343369--39343762 Score: 506
Period size: 40 Copynumber: 9.8 Consensus size: 41
39343359 ATTTGAATTT
* * *
39343369 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATTT
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTA
*
39343409 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTA
* *
39343449 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGAT-TA
*
39343491 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTA
* *
39343531 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGAT-TA
*
39343573 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTA
*
39343613 TATCCGGGCTAAG---C--AGGCATTTGTGCGAGTTGATATATA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTG--AT-TA
*
39343652 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTA
*
39343692 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTGATTA
** *
39343732 TGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
39343763 TTGTGGTAAT
Statistics
Matches: 315, Mismatches: 22, Indels: 34
0.85 0.06 0.09
Matches are distributed among these distances:
35 16 0.05
37 2 0.01
39 18 0.06
40 181 0.57
41 6 0.02
42 76 0.24
44 16 0.05
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.25
Consensus pattern (41 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTA
Found at i:39343514 original size:82 final size:82
Alignment explanation
Indices: 39343369--39343762 Score: 590
Period size: 82 Copynumber: 4.9 Consensus size: 82
39343359 ATTTGAATTT
* * * * *
39343369 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGAT-TTTATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
* *
39343432 ATTTGTGCGAGTTGATA
66 AATTGTGCAAGTTGATA
39343449 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
39343514 AATTGTGCAAGTTGATA
66 AATTGTGCAAGTTGATA
39343531 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
39343596 AATTGTGCAAGTTGATA
66 AATTGTGCAAGTTGATA
39343613 TATCCGGGCT-A-A---GCAGGCATTTGTGCGAGTTGATATATATATCCGGGCTAAGACCCGAAG
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG--ATATATATCCGGGCTAAGACCCGAAG
39343673 GCAATTGTGCAAGTTGATA
64 GCAATTGTGCAAGTTGATA
* * * ** *
39343692 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG--CTATGCCCGGGTTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
39343755 AATTGTGC
66 AATTGTGC
39343763 TTGTGGTAAT
Statistics
Matches: 292, Mismatches: 13, Indels: 18
0.90 0.04 0.06
Matches are distributed among these distances:
77 20 0.07
79 55 0.19
80 62 0.21
81 6 0.02
82 131 0.45
84 18 0.06
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.25
Consensus pattern (82 bp):
TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
AATTGTGCAAGTTGATA
Found at i:39347787 original size:19 final size:20
Alignment explanation
Indices: 39347749--39347788 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
39347739 TTATATGTAA
*
39347749 TATATATGTATATTTTATTTT
1 TATATATGTATA-TTAATTTT
39347770 TATATATGTATA-TAATTTT
1 TATATATGTATATTAATTTT
39347789 AAGCCTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
21 12 0.67
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (20 bp):
TATATATGTATATTAATTTT
Found at i:39348234 original size:12 final size:11
Alignment explanation
Indices: 39348205--39348247 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 11
39348195 GCAAATCTAC
39348205 ATATATATTGT
1 ATATATATTGT
*
39348216 ATTTATATATGT
1 ATATATAT-TGT
39348228 ATATATACTTGT
1 ATATATA-TTGT
*
39348240 AAATATAT
1 ATATATAT
39348248 AATTCATATA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
11 8 0.30
12 18 0.67
13 1 0.04
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.51
Consensus pattern (11 bp):
ATATATATTGT
Found at i:39349496 original size:16 final size:16
Alignment explanation
Indices: 39349475--39349508 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
39349465 TGTGTTTCAC
39349475 TTTGACTGCATGGCAT
1 TTTGACTGCATGGCAT
39349491 TTTGACTGCATGGCAT
1 TTTGACTGCATGGCAT
39349507 TT
1 TT
39349509 CATTATAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.18, C:0.18, G:0.24, T:0.41
Consensus pattern (16 bp):
TTTGACTGCATGGCAT
Found at i:39349976 original size:19 final size:18
Alignment explanation
Indices: 39349952--39349997 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
39349942 ACGTCTTTTT
*
39349952 TTTGCATTCATTTCATGCA
1 TTTGCATTCATTACAT-CA
39349971 TTTGCATTTCATTACATCA
1 TTTGCA-TTCATTACATCA
*
39349990 TATGCATT
1 TTTGCATT
39349998 AGACACCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 2 0.08
19 13 0.54
20 9 0.38
ACGTcount: A:0.24, C:0.20, G:0.09, T:0.48
Consensus pattern (18 bp):
TTTGCATTCATTACATCA
Found at i:39354216 original size:44 final size:44
Alignment explanation
Indices: 39354102--39355231 Score: 863
Period size: 44 Copynumber: 25.4 Consensus size: 44
39354092 CATACTGGTG
** * * *
39354102 GTGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTACTGGC
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTGAC
* * * *
39354146 AGTGAAGTAGATCAAATATAGCAGATCTTGTCTTCATGTATTGGC
1 -GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTGAC
* *** * **
39354191 GTGAAGTAGATCGAAGATAATAGATCTTGTCTTCCCATACTCGTG
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTA-TTGAC
* * * *
39354236 GAGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGAC
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTGAC
* * * * * *
39354280 ATGAAGTAGATCAAAGATAGTAGAACTTTTCTTCCCATACTAGTG--
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTT--CAT-GTATTGAC
* *** * **
39354325 GTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTG
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTA-TTGAC
* *
39354370 GTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGAC
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTGAC
* * *
39354414 ATGAAGTAGATC-AGAGATAGTGGATCTTGTCTTTATGTATTGAC
1 GTGAAGTAGATCGA-AGATAGTAGATCTTGTCTTCATGTATTGAC
* * *** * **
39354458 ATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTG
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTA-TTGAC
* *
39354503 GTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGAC
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTGAC
* * * * *
39354547 ATGAAGTAGATC-AGAGATAGTGGATCGTGTCTTTATGTATTAAC
1 GTGAAGTAGATCGA-AGATAGTAGATCTTGTCTTCATGTATTGAC
* * * *** * **
39354591 CTGAAGTAGGTCGAAGATAGCAGATCTTGTCTTCCCATACTGGTG
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTA-TTGAC
* * *
39354636 GTGAAGTAGATCGAAGATAATGGATCTTATCTTCATGTATTGAC
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTGAC
* * * *** * **
39354680 ATGAAGTAGATCGAAGATAGCAGACCTTGTCTTCCCATACTGGTG
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTA-TTGAC
* * *
39354725 GTGAAGTAGATCGAAGATAATGGATCTTGTCTTCTTGTATTGAC
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTGAC
* * * *
39354769 ATGAAATAGATC-AGAGATAGTGGATCTTGTCTTTATGTATTGAC
1 GTGAAGTAGATCGA-AGATAGTAGATCTTGTCTTCATGTATTGAC
* * * * * **
39354813 ATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCTTATACTGGTG
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTA-TTGAC
* *
39354858 GTG-AGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGAC
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTGAC
* * *
39354901 ATGAAGTAGATC-ATAGATAGTGGGTCTTGTCTTCATGTATTGAC
1 GTGAAGTAGATCGA-AGATAGTAGATCTTGTCTTCATGTATTGAC
* * *** * **
39354945 ATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTG
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTA-TTGAC
* *
39354990 GTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGAC
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTGAC
* * * *** * **
39355034 ATGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTG
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTA-TTGAC
* * * *
39355079 GTGAAGAAGATCTAAGATAATTGATCTTGTCTTCATGTATTGAC
1 GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTGAC
* * * * * *
39355123 ATGAAATAGATC-AGAGATAGCAGATCTTGTCTTCCTGTACTGGC
1 GTGAAGTAGATCGA-AGATAGTAGATCTTGTCTTCATGTATTGAC
* * ** * *
39355167 AGTAAAGTAGATCAAAGATAACAGATCTTGTTTTCCTGTATTGAC
1 -GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTGAC
* *
39355212 AGCGAAGAAGATCGAAGATA
1 -GTGAAGTAGATCGAAGATA
39355232 CAAGTCTTAT
Statistics
Matches: 846, Mismatches: 214, Indels: 50
0.76 0.19 0.05
Matches are distributed among these distances:
42 2 0.00
43 11 0.01
44 467 0.55
45 358 0.42
46 4 0.00
47 4 0.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (44 bp):
GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTGAC
Found at i:39354224 original size:89 final size:89
Alignment explanation
Indices: 39354059--39355231 Score: 943
Period size: 89 Copynumber: 13.2 Consensus size: 89
39354049 TATTGGTAGC
* * * ** * *
39354059 GAAGTGGATCAACGATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAACA
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTACTGG-CGTGAAGTAGATCGAAGATAATA
* * *
39354124 GATCTTGTCTTCCTGTACTGGCAGT
65 GATCTTGTCTTCATGTATTGACAGT
* * *
39354149 GAAGTAGATCAAATATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAATAG
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTACTGGCGTGAAGTAGATCGAAGATAATAG
*** * ** *
39354214 ATCTTGTCTTCCCATACTCG-TGGA
66 ATCTTGTCTTCATGTA-TTGACAGT
*** * * * * * *
39354238 GAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAAAGATAGTAG
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTACTGGCGTGAAGTAGATCGAAGATAATAG
* * * *
39354303 AACTTTTCTTCCCATACTAGTG---GT
66 ATCTTGTCTT--CAT-GTATTGACAGT
* ** * *
39354327 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTACTGG-CGTGAAGTAGATCGAAGATAATA
39354392 GATCTTGTCTTCATGTATTGACA-T
65 GATCTTGTCTTCATGTATTGACAGT
* ** ** * * * **
39354416 GAAGTAGATCAGAGATAGTGGATCTTGTCTTTATGTATTGACATGAAGTAGATCGAAGATAGCAG
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTACTGGCGTGAAGTAGATCGAAGATAATAG
*** * ***
39354481 ATCTTGTCTTCCCATACTGGTGGT
66 ATCTTGTCTTCATGTATTGACAGT
* *** * * * * * *
39354505 GAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGTG
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTACTGGCGTGAAGTAGATCGA-AGATAATA
* * * *
39354569 GATCGTGTCTTTATGTATTAAC-CT
65 GATCTTGTCTTCATGTATTGACAGT
* * ** * *
39354593 GAAGTAGGTCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTACTGG-CGTGAAGTAGATCGAAGATAATA
*
39354658 GATCTTATCTTCATGTATTGACA-T
65 GATCTTGTCTTCATGTATTGACAGT
* * ** * *
39354682 GAAGTAGATCGAAGATAGCAGACCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTACTGG-CGTGAAGTAGATCGAAGATAATA
*
39354747 GATCTTGTCTTCTTGTATTGACA-T
65 GATCTTGTCTTCATGTATTGACAGT
* * ** ** * * * **
39354771 GAAATAGATCAGAGATAGTGGATCTTGTCTTTATGTATTGACATGAAGTAGATCGAAGATAGCAG
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTACTGGCGTGAAGTAGATCGAAGATAATAG
* * * ***
39354836 ATCTTGTCTTCTTATACTGGTGGT
66 ATCTTGTCTTCATGTATTGACAGT
* *** * * * * * *
39354860 G-AGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATC-ATAGATAGTG
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTACTGGCGTGAAGTAGATCGA-AGATAATA
*
39354923 GGTCTTGTCTTCATGTATTGACA-T
65 GATCTTGTCTTCATGTATTGACAGT
* ** * *
39354947 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTACTGG-CGTGAAGTAGATCGAAGATAATA
39355012 GATCTTGTCTTCATGTATTGACA-T
65 GATCTTGTCTTCATGTATTGACAGT
** * * * *
39355036 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGAAGATCTAAGATAATT
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTACTGG-CGTGAAGTAGATCGAAGATAATA
39355101 GATCTTGTCTTCATGTATTGACA-T
65 GATCTTGTCTTCATGTATTGACAGT
* * * * *
39355125 GAAATAGATCAGAGATAGCAGATCTTGTCTTCCTGTACTGGCAGTAAAGTAGATCAAAGATAACA
1 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTACTGGC-GTGAAGTAGATCGAAGATAATA
* * *
39355190 GATCTTGTTTTCCTGTATTGACAGC
65 GATCTTGTCTTCATGTATTGACAGT
* *
39355215 GAAGAAGATCGAAGATA
1 GAAGTAGATCAAAGATA
39355232 CAAGTCTTAT
Statistics
Matches: 885, Mismatches: 178, Indels: 40
0.80 0.16 0.04
Matches are distributed among these distances:
87 7 0.01
88 207 0.23
89 591 0.67
90 76 0.09
91 2 0.00
92 2 0.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (89 bp):
GAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTACTGGCGTGAAGTAGATCGAAGATAATAG
ATCTTGTCTTCATGTATTGACAGT
Found at i:39354515 original size:133 final size:133
Alignment explanation
Indices: 39354059--39355212 Score: 1058
Period size: 133 Copynumber: 8.7 Consensus size: 133
39354049 TATTGGTAGC
* *
39354059 GAAGTGGATC-AACGATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAAC
1 GAAGTAGATCGAA-GATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAAT
* * * * * *
39354123 AGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCAAATATAGCAGATCTTGTCTTCATGTATT
65 GGATCTTGTCTTCATGTATTGACA-TGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTATT
*
39354188 GGCGT
129 GACGT
* * * *
39354193 GAAGTAGATCGAAGATAATAGATCTTGTCTTCCCATACTCGTGGAGAAGTAGATCAAAGATAATG
1 GAAGTAGATCGAAGATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
* * * * * *
39354258 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAAAGATAGTAGAACTTTTCTTCCCATACTAG
66 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTT--CAT-GTAT
39354323 TG--GT
128 TGACGT
*
39354327 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
1 GAAGTAGATCGAAGATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
** *
39354392 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGTGGATCTTGTCTTTATGTATTGA
66 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTATTGA
*
39354457 CAT
131 CGT
*
39354460 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
1 GAAGTAGATCGAAGATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
** * * *
39354525 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGTGGATCGTGTCTTTATGTATTAA
66 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTATTGA
*
39354590 CCT
131 CGT
* *
39354593 GAAGTAGGTCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
1 GAAGTAGATCGAAGATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
* * *** *
39354658 GATCTTATCTTCATGTATTGACATGAAGTAGATC-GAAGATAGCAGACCTTGTCTTCCCATACTG
66 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGATAGCAGATCTTGTCTTCATGTA-TT
**
39354722 GTGGT
129 GACGT
* * *** * *** * *
39354727 GAAGTAGATCGAAGATAATGGATCTTGTCTTCTTGTA-TTGACATGAAATAGATC-AGAGATAGT
1 GAAGTAGATCGAAGATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGA-AGATAAT
* * *
39354790 GGATCTTGTCTTTATGTATTGACATGAAGTAGATC-GAAGATAGCAGATCTTGTCTTCTTATACT
65 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGATAGCAGATCTTGTCTTCATGTA-T
* **
39354854 GGTGGT
128 TGACGT
* * *** * *** *
39354860 G-AGTAGATCGAAGATAATGGATCTTGTCTTCATGTA-TTGACATGAAGTAGATC-ATAGATAGT
1 GAAGTAGATCGAAGATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGA-AGATAAT
* ***
39354922 GGGTCTTGTCTTCATGTATTGACATGAAGTAGATC-GAAGATAGCAGATCTTGTCTTCCCATACT
65 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGATAGCAGATCTTGTCTTCATGTA-T
* **
39354986 GGTGGT
128 TGACGT
* * *** * *** * ***
39354992 GAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTA-TTGACATGAAGTAGATCAAAGATAGCA
1 GAAGTAGATCGAAGATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
*** * *** * ***
39355056 GATCTTGTCTTCCCATACTGGTGGTGAAGAAGATCTA-AGATAATTGATCTTGTCTTCATGTATT
66 GATCTTGTCTTCATGTA-TTGACATGAAGTAGATC-AGAGATAGCAGATCTTGTCTTCATGTATT
*
39355120 GACAT
129 GACGT
* * ** ** * * *
39355125 GAAATAGATC-AGAGATAGCAGATCTTGTCTTCCTGTACTGGCAGTAAAGTAGATCAAAGATAAC
1 GAAGTAGATCGA-AGATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAAT
* * *
39355189 AGATCTTGTTTTCCTGTATTGACA
65 GGATCTTGTCTTCATGTATTGACA
39355213 GCGAAGAAGA
Statistics
Matches: 893, Mismatches: 111, Indels: 33
0.86 0.11 0.03
Matches are distributed among these distances:
131 4 0.00
132 130 0.15
133 463 0.52
134 287 0.32
135 5 0.01
136 4 0.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (133 bp):
GAAGTAGATCGAAGATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTATTGA
CGT
Found at i:39356812 original size:19 final size:20
Alignment explanation
Indices: 39356774--39356813 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
39356764 TTATATGTAA
*
39356774 TATATATGTATATTTTATTTT
1 TATATATGTATA-TTAATTTT
39356795 TATATATGTATA-TAATTTT
1 TATATATGTATATTAATTTT
39356814 AAGCCTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
21 12 0.67
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (20 bp):
TATATATGTATATTAATTTT
Found at i:39359572 original size:18 final size:19
Alignment explanation
Indices: 39359551--39359597 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
39359541 ATTTGTTAAA
39359551 TTAATATTATTTATT-ACC
1 TTAATATTATTTATTCACC
39359569 TTAA-ATATATTTTATTCACC
1 TTAATAT-TA-TTTATTCACC
39359589 -TAATATTAT
1 TTAATATTAT
39359598 GATTTTTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
17 2 0.08
18 7 0.28
19 11 0.44
20 5 0.20
ACGTcount: A:0.36, C:0.11, G:0.00, T:0.53
Consensus pattern (19 bp):
TTAATATTATTTATTCACC
Found at i:39360584 original size:20 final size:19
Alignment explanation
Indices: 39360548--39360602 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
39360538 TTAATTTTTT
39360548 AAAATAAAAAATATTTAAA
1 AAAATAAAAAATATTTAAA
* *
39360567 AAAATTAAAATTATTTTAAA
1 AAAATAAAAAATA-TTTAAA
* * *
39360587 CATATAATAAATATTT
1 AAAATAAAAAATATTT
39360603 TTATTTTTTA
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
19 14 0.50
20 14 0.50
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAATAAAAAATATTTAAA
Found at i:39363438 original size:25 final size:25
Alignment explanation
Indices: 39363383--39363438 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
39363373 TAAGATCCTC
* *
39363383 CGAGCTGAATAACGGTAAGCTCATG
1 CGAGCTGAATAACGATAAGCTCATA
* * *
39363408 CAAGCTGAGTATCGATAAGCTCATA
1 CGAGCTGAATAACGATAAGCTCATA
39363433 CGAGCT
1 CGAGCT
39363439 AAAATCGGTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.21
Consensus pattern (25 bp):
CGAGCTGAATAACGATAAGCTCATA
Found at i:39372918 original size:25 final size:24
Alignment explanation
Indices: 39372865--39372960 Score: 93
Period size: 25 Copynumber: 3.8 Consensus size: 24
39372855 ATGCTTATAT
* * *
39372865 GAGCACATAAACGGGAAGCTCAAGT
1 GAGC-CATTAACGGGAAGCTCCAGA
*
39372890 GAGCCATGTAACGGGAAGCTCCGGA
1 GAGCCAT-TAACGGGAAGCTCCAGA
* *
39372915 GAGCCATTAACGTGAAGCTCACAAA
1 GAGCCATTAACGGGAAGCTC-CAGA
*
39372940 GAGCCTTTAATCGGGAAGCTC
1 GAGCCATTAA-CGGGAAGCTC
39372961 ATAAAGAGCC
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
24 15 0.25
25 35 0.59
26 9 0.15
ACGTcount: A:0.33, C:0.23, G:0.28, T:0.16
Consensus pattern (24 bp):
GAGCCATTAACGGGAAGCTCCAGA
Found at i:39372966 original size:26 final size:25
Alignment explanation
Indices: 39372914--39372994 Score: 78
Period size: 26 Copynumber: 3.2 Consensus size: 25
39372904 GAAGCTCCGG
* *
39372914 AGAGCCATTAA-CGTGAAGCTCACAA
1 AGAGCC-TTAATCGGGAAGCTCATAA
39372939 AGAGCCTTTAATCGGGAAGCTCATAA
1 AGAGCC-TTAATCGGGAAGCTCATAA
*
39372965 AGAGCCATATATCGGGACA-CTCAT-A
1 AGAGCCTTA-ATCGGGA-AGCTCATAA
39372990 AGAGC
1 AGAGC
39372995 TGCGATGTGT
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
25 18 0.37
26 30 0.61
27 1 0.02
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (25 bp):
AGAGCCTTAATCGGGAAGCTCATAA
Found at i:39376423 original size:16 final size:16
Alignment explanation
Indices: 39376402--39376434 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
39376392 AAATTAATTT
39376402 TAATTA-ATAAATTTTC
1 TAATTATAT-AATTTTC
39376418 TAATTATATAATTTTC
1 TAATTATATAATTTTC
39376434 T
1 T
39376435 CAATCCAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (16 bp):
TAATTATATAATTTTC
Found at i:39378938 original size:15 final size:15
Alignment explanation
Indices: 39378918--39378947 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
39378908 GGCTGACTAT
39378918 TCTGATATATGTATA
1 TCTGATATATGTATA
*
39378933 TCTGATATTTGTATA
1 TCTGATATATGTATA
39378948 CAAGCATGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.13, T:0.50
Consensus pattern (15 bp):
TCTGATATATGTATA
Found at i:39392976 original size:12 final size:13
Alignment explanation
Indices: 39392959--39392987 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
39392949 CTCATACATG
39392959 AATAAATAAA-GC
1 AATAAATAAATGC
39392971 AATAAATAAATGC
1 AATAAATAAATGC
39392984 AATA
1 AATA
39392988 GTTATATCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:39400828 original size:29 final size:29
Alignment explanation
Indices: 39400790--39400845 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
39400780 TTTAGTAATT
*
39400790 CAACTATAAAAGGTTATAAAATAGTCATC
1 CAACTATAAAAAGTTATAAAATAGTCATC
* *
39400819 CAACTGTAAAAAGTTATAAAATTGTCA
1 CAACTATAAAAAGTTATAAAATAGTCA
39400846 CTTAATTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.48, C:0.12, G:0.11, T:0.29
Consensus pattern (29 bp):
CAACTATAAAAAGTTATAAAATAGTCATC
Found at i:39401897 original size:22 final size:24
Alignment explanation
Indices: 39401853--39401900 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 24
39401843 AAATTTAGGG
*
39401853 TAATGAAATTTAATAAATTAAAAA
1 TAATGAAATTTAATAAATAAAAAA
*
39401877 TAATGATA-TTAA-AAATAAAAAA
1 TAATGAAATTTAATAAATAAAAAA
39401899 TA
1 TA
39401901 TAGAAAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 11 0.50
23 4 0.18
24 7 0.32
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (24 bp):
TAATGAAATTTAATAAATAAAAAA
Found at i:39418255 original size:14 final size:14
Alignment explanation
Indices: 39418236--39418312 Score: 59
Period size: 14 Copynumber: 5.6 Consensus size: 14
39418226 CAATGTTCCA
39418236 TTTCATATATCTAT
1 TTTCATATATCTAT
* *
39418250 TTTCATATAACCA-
1 TTTCATATATCTAT
*
39418263 TTTCATTTATCTAT
1 TTTCATATATCTAT
* * *
39418277 TTCCATATAACCA-
1 TTTCATATATCTAT
** *
39418290 AATCATATATCTGT
1 TTTCATATATCTAT
39418304 TTTCATATA
1 TTTCATATA
39418313 ACTGATTCAT
Statistics
Matches: 44, Mismatches: 17, Indels: 4
0.68 0.26 0.06
Matches are distributed among these distances:
13 17 0.39
14 27 0.61
ACGTcount: A:0.32, C:0.18, G:0.01, T:0.48
Consensus pattern (14 bp):
TTTCATATATCTAT
Found at i:39418263 original size:27 final size:27
Alignment explanation
Indices: 39418233--39418314 Score: 119
Period size: 27 Copynumber: 3.0 Consensus size: 27
39418223 ACCCAATGTT
39418233 CCATTTCATATATCTATTTTCATATAA
1 CCATTTCATATATCTATTTTCATATAA
* *
39418260 CCATTTCATTTATCTATTTCCATATAA
1 CCATTTCATATATCTATTTTCATATAA
** *
39418287 CCAAATCATATATCTGTTTTCATATAA
1 CCATTTCATATATCTATTTTCATATAA
39418314 C
1 C
39418315 TGATTCATAT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.33, C:0.21, G:0.01, T:0.45
Consensus pattern (27 bp):
CCATTTCATATATCTATTTTCATATAA
Found at i:39418266 original size:13 final size:13
Alignment explanation
Indices: 39418233--39418335 Score: 64
Period size: 13 Copynumber: 7.7 Consensus size: 13
39418223 ACCCAATGTT
*
39418233 CCATTTCATATAT
1 CCATTTCATATAA
*
39418246 CTATTTTCATATAA
1 CCA-TTTCATATAA
* *
39418260 CCATTTCATTTAT
1 CCATTTCATATAA
*
39418273 CTATTTCCATATAA
1 CCATTT-CATATAA
** *
39418287 CCAAATCATATAT
1 CCATTTCATATAA
**
39418300 CTGTTTTCATATAA
1 C-CATTTCATATAA
*
39418314 CTGA-TTCATATAA
1 C-CATTTCATATAA
39418327 CCATTTCAT
1 CCATTTCAT
39418336 TTCTAAGTTT
Statistics
Matches: 67, Mismatches: 19, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
12 1 0.01
13 37 0.55
14 29 0.43
ACGTcount: A:0.33, C:0.20, G:0.02, T:0.45
Consensus pattern (13 bp):
CCATTTCATATAA
Found at i:39418322 original size:27 final size:26
Alignment explanation
Indices: 39418237--39418325 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 26
39418227 AATGTTCCAT
*
39418237 TTCATATATCTATTTTCATATAACCAT
1 TTCATATATCTATTTTCATATAA-CAA
* *
39418264 TTCATTTATCTATTTCCATATAACCAA
1 TTCATATATCTATTTTCATATAA-CAA
* * *
39418291 ATCATATATCTGTTTTCATATAACTGA
1 TTCATATATCTATTTTCATATAAC-AA
39418318 TTCATATA
1 TTCATATA
39418326 ACCATTTCAT
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.02
27 51 0.98
ACGTcount: A:0.34, C:0.18, G:0.02, T:0.46
Consensus pattern (26 bp):
TTCATATATCTATTTTCATATAACAA
Found at i:39422611 original size:43 final size:43
Alignment explanation
Indices: 39422513--39422638 Score: 141
Period size: 43 Copynumber: 2.9 Consensus size: 43
39422503 AGCTCGTACA
* *
39422513 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATACCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACACATACCG
* * *
39422556 GTG-CTACTGTCCCAGACAG-GGTCTTACACGTAAACACA-AGTCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAAACACATA-CCG
* *
39422599 ATGCCGACGTCCCAGACGTGGTCTTACACGAAAACACATA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACACATA
39422639 TCGGAATCCT
Statistics
Matches: 69, Mismatches: 8, Indels: 11
0.78 0.09 0.12
Matches are distributed among these distances:
42 5 0.07
43 59 0.86
44 5 0.07
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACACATACCG
Found at i:39423151 original size:11 final size:11
Alignment explanation
Indices: 39423135--39423160 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
39423125 AACCCTTGGA
39423135 TTTTTCTTTTC
1 TTTTTCTTTTC
39423146 TTTTTCTTTTC
1 TTTTTCTTTTC
39423157 TTTT
1 TTTT
39423161 ACATTCGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTCTTTTC
Found at i:39423249 original size:28 final size:28
Alignment explanation
Indices: 39423209--39423265 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 28
39423199 CTCCCTTTTT
39423209 TTTATTATAATAA-CTTTATAATATATTA
1 TTTATTATAATAACCTTTATAAT-TATTA
*
39423237 TTTATTATTATAACCTTTATAATTATTA
1 TTTATTATAATAACCTTTATAATTATTA
39423265 T
1 T
39423266 AAAAACTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 18 0.67
29 9 0.33
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (28 bp):
TTTATTATAATAACCTTTATAATTATTA
Found at i:39429762 original size:76 final size:76
Alignment explanation
Indices: 39429636--39429787 Score: 295
Period size: 76 Copynumber: 2.0 Consensus size: 76
39429626 ATAAGATGAG
39429636 CCATTTTCGCATGGCCTTTTATATACATGTTCCAAAACTAACCAAAAACATAAGCAAGCCTATAC
1 CCATTTTCGCATGGCCTTTTATATACATGTTCCAAAACTAACCAAAAACATAAGCAAGCCTATAC
39429701 ATGCCATAATA
66 ATGCCATAATA
*
39429712 CCATTTTCGCATGGCCTTTTATATACATGTTCCAAAACTAACCAAGAACATAAGCAAGCCTATAC
1 CCATTTTCGCATGGCCTTTTATATACATGTTCCAAAACTAACCAAAAACATAAGCAAGCCTATAC
39429777 ATGCCATAATA
66 ATGCCATAATA
39429788 TCGAGTTCAA
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 75 1.00
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.28
Consensus pattern (76 bp):
CCATTTTCGCATGGCCTTTTATATACATGTTCCAAAACTAACCAAAAACATAAGCAAGCCTATAC
ATGCCATAATA
Found at i:39431371 original size:28 final size:28
Alignment explanation
Indices: 39431331--39431387 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 28
39431321 TCTCCCTTTT
39431331 TTTATTATAATAA-CTTTATAATATATTA
1 TTTATTATAATAACCTTTATAAT-TATTA
*
39431359 TTTATTATTATAACCTTTATAATTATTA
1 TTTATTATAATAACCTTTATAATTATTA
39431387 T
1 T
39431388 AAAAACTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 18 0.67
29 9 0.33
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (28 bp):
TTTATTATAATAACCTTTATAATTATTA
Found at i:39438716 original size:13 final size:13
Alignment explanation
Indices: 39438698--39438722 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
39438688 TAATGGTATA
39438698 TTGAATCCATGAT
1 TTGAATCCATGAT
39438711 TTGAATCCATGA
1 TTGAATCCATGA
39438723 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:39440339 original size:47 final size:47
Alignment explanation
Indices: 39440154--39440612 Score: 720
Period size: 47 Copynumber: 9.6 Consensus size: 47
39440144 TTATTCATTG
** *
39440154 GAATGTGAAAGTGTATATATGTGATAAGGCCGGATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
39440201 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
39440250 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
39440299 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
39440346 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
39440393 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
39440442 GAATGTGGAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
39440491 GAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * * * *
39440538 GAATGTGAAAGTGTATATATGTGACAAGGCCGAGTGGCCAACGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
39440585 GGATGTGAAAGTGTATAAATGTGATAAG
1 GAATGTGAAAGTGTATATATGTGATAAG
39440613 TCCCGAAGGG
Statistics
Matches: 389, Mismatches: 19, Indels: 8
0.94 0.05 0.02
Matches are distributed among these distances:
47 203 0.52
49 186 0.48
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:39440481 original size:192 final size:192
Alignment explanation
Indices: 39440154--39440612 Score: 823
Period size: 192 Copynumber: 2.4 Consensus size: 192
39440144 TTATTCATTG
*
39440154 GAATGTGAAAGTGTATATATGTGATAAGGCCGGATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
39440219 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
39440284 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
131 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
*
39440346 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
*
39440411 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGATAAGGCCT
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
* *
39440476 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGAT
131 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
* * * *
39440538 GAATGTGAAAGTGTATATATGTGACAAGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-
1 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
39440602 A-ATGTGATAAG
66 ATATGTGATAAG
39440613 TCCCGAAGGG
Statistics
Matches: 257, Mismatches: 10, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
190 10 0.04
191 1 0.00
192 246 0.96
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (192 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
Found at i:39443438 original size:18 final size:18
Alignment explanation
Indices: 39443396--39443438 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
39443386 GCCCATTCCG
* *
39443396 AAGTATATATATATACAT
1 AAGTATGTATATATACAC
39443414 ATA-TATGTATATATACAC
1 A-AGTATGTATATATACAC
39443432 AAGTATG
1 AAGTATG
39443439 CCCATTCGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 1 0.05
18 19 0.90
19 1 0.05
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (18 bp):
AAGTATGTATATATACAC
Found at i:39443945 original size:56 final size:54
Alignment explanation
Indices: 39443883--39444087 Score: 207
Period size: 56 Copynumber: 3.7 Consensus size: 54
39443873 GAGATTGGCG
* *
39443883 CTAAGTGTGCGGGTTTAAATTGTGCAGCACTAAGTGTGCGA-ATTGACTATGTAGCA
1 CTAAGTGTGCGAG-TT-AATTGTG-AGCACTAAGTGTGCGAGATTGATTATGTAGCA
** *
39443939 CTAAGTGTGCGAGTTGCCTATGT-AGCACTAAGTGTGCGAGCTTGATTATGTAGCA
1 CTAAGTGTGCGAGTT-AAT-TGTGAGCACTAAGTGTGCGAGATTGATTATGTAGCA
* * * *
39443994 CTAAGTGTGCGAGCTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAG-TTAATTGTG-AGCACTAAGTGTGCGAGATTGATTATGTAGCA
* * * *
39444050 CTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 CTAAGTGTGCGAGTTAATTGT-GAGCACTAAGTGTGCG
39444088 GACTTATTAT
Statistics
Matches: 130, Mismatches: 13, Indels: 13
0.83 0.08 0.08
Matches are distributed among these distances:
54 18 0.14
55 52 0.40
56 60 0.46
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.32
Consensus pattern (54 bp):
CTAAGTGTGCGAGTTAATTGTGAGCACTAAGTGTGCGAGATTGATTATGTAGCA
Found at i:39443997 original size:28 final size:27
Alignment explanation
Indices: 39443908--39444087 Score: 270
Period size: 28 Copynumber: 6.6 Consensus size: 27
39443898 TAAATTGTGC
* *
39443908 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
**
39443935 AGCACTAAGTGTGCGAGTTGCCTATGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
39443962 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGATTATGT
39443990 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGATTATGT
*
39444018 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAG-TTGATTATGT
*
39444046 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
39444073 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
39444088 GACTTATTAT
Statistics
Matches: 145, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
27 66 0.46
28 79 0.54
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:39451642 original size:18 final size:18
Alignment explanation
Indices: 39451600--39451642 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
39451590 GCCCATTCCG
* *
39451600 AAGTATATATATATACAT
1 AAGTATGTATATATACAC
39451618 ATA-TATGTATATATACAC
1 A-AGTATGTATATATACAC
39451636 AAGTATG
1 AAGTATG
39451643 CCCATTCGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 1 0.05
18 19 0.90
19 1 0.05
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (18 bp):
AAGTATGTATATATACAC
Found at i:39452196 original size:26 final size:27
Alignment explanation
Indices: 39452110--39452285 Score: 275
Period size: 27 Copynumber: 6.6 Consensus size: 27
39452100 TAAATTGTGC
*
39452110 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
39452137 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
39452165 AGCACTAAGTGTGCGAGTTGA-TATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
39452191 AGCACTAAGTGTGCGAGTTGA-TATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* *
39452217 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* *
39452244 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
39452271 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
39452286 GACTTATTAT
Statistics
Matches: 144, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
26 52 0.36
27 65 0.45
28 27 0.19
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:39456637 original size:26 final size:27
Alignment explanation
Indices: 39456572--39456698 Score: 116
Period size: 27 Copynumber: 4.7 Consensus size: 27
39456562 CCCTAATTGA
* *
39456572 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATATGG
* *
39456599 TAAAATGATTGTTTTGCCCATATATGG
1 TAAAATGACTGTTTTGCCCTTATATGG
* *
39456626 T-AAATGACTGTTTTTCCCTTATATAG
1 TAAAATGACTGTTTTGCCCTTATATGG
* *
39456652 -AAATAT-AGTTGTTTTGCCTTTATATGG
1 TAAA-ATGA-CTGTTTTGCCCTTATATGG
** *
39456679 TAAGGTGACTGTTATGCCCT
1 TAAAATGACTGTTTTGCCCT
39456699 ATGTGATGTA
Statistics
Matches: 78, Mismatches: 17, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
26 24 0.31
27 51 0.65
28 3 0.04
ACGTcount: A:0.26, C:0.13, G:0.18, T:0.43
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATATGG
Found at i:39468917 original size:51 final size:49
Alignment explanation
Indices: 39468835--39469054 Score: 290
Period size: 47 Copynumber: 4.6 Consensus size: 49
39468825 NNNNNNNGAT
39468835 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
39468884 AATGTGGAAGTGTATATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
39468935 AATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
39468982 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
39469029 GATGTGAAAGTGTATA-A-ATGTGATAA
1 AATGTGAAAGTGTATATATATGTGATAA
39469055 CTCCCGAAGG
Statistics
Matches: 152, Mismatches: 15, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
47 91 0.60
48 1 0.01
49 13 0.09
51 47 0.31
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:39471381 original size:17 final size:19
Alignment explanation
Indices: 39471361--39471395 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
39471351 ATTTTAATAT
39471361 ATGTA-TAT-ATTTATAAA
1 ATGTATTATAATTTATAAA
39471378 ATGTATTATAATTTATAA
1 ATGTATTATAATTTATAA
39471396 TTTATAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 3 0.19
19 8 0.50
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (19 bp):
ATGTATTATAATTTATAAA
Found at i:39482757 original size:44 final size:44
Alignment explanation
Indices: 39482674--39482819 Score: 184
Period size: 44 Copynumber: 3.3 Consensus size: 44
39482664 CTTGAGCAAT
* * * *
39482674 AGCGGAGCAGATCGAAGACGGTGAATCTTATCTCCCTAAGATTAC
1 AGCGGAGCAGATTGAAGCCAGT-AATCCTATCTCCCTAAGATTAC
39482719 AGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTAAGATTAC
1 AGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTAAGATTAC
* * * * *
39482763 AGTGGAGCAGACTGAAGCCAATAATCCTATTTCCCTGAGATTAC
1 AGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTAAGATTAC
**
39482807 AGTAGAGCAGATT
1 AGCGGAGCAGATT
39482820 AAAATAAAGG
Statistics
Matches: 90, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
44 71 0.79
45 19 0.21
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.23
Consensus pattern (44 bp):
AGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTAAGATTAC
Found at i:39482921 original size:263 final size:262
Alignment explanation
Indices: 39482455--39483040 Score: 780
Period size: 263 Copynumber: 2.2 Consensus size: 262
39482445 CCTGAGCAAT
* *** * * * * *
39482455 AGCGGAGCAGATCGAAGATGGTGAATCTTATCTCCTTCAGATTACAGTAGAGGAGATTGAAGCCA
1 AGCGGAGCAGATTGAAGCCAGT-AATCCTATCTCCCTAAGATTACAGTGGAGCAGA-TGAAGCCA
* * ** * *
39482520 GTAATCCTATTTCCCTGAGATTACAGTGGAGTGGATTAAAATAAAAGATTTTATCTCTCTGAAGT
64 ATAATCCTATTTCCCTGAGATTACAGTAGAGCAGATTAAAATAAAAGATCTTATCTCTATGAAGT
*
39482585 TACAGTAGAGTAGATCGCATAAGGTCTTATCCCCCTGAGCTTACAGTGGAATAGACCGAAGAGTT
129 TACAGTAGAGTAGATCGCATAAGGTCTTATCCCCCTGAGCTTACAGTGGAATAGACCGAAGAATT
* * * * *
39482650 CTAGATCTTGTCTCCTTGAGCAATAGC-GGAGC-AGATCGAAGACGGTGAATCTTATCTCCCTAA
194 CCAGATCTTATCTCCCTAAGCAATA-CTGGAGCTA-ATCGAAAACGGTGAATCTTATCTCCCTAA
39482713 GATTAC
257 GATTAC
39482719 AGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTAAGATTACAGTGGAGCAGACTGAAGCCAA
1 AGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTAAGATTACAGTGGAGCAGA-TGAAGCCAA
*
39482784 TAATCCTATTTCCCTGAGATTACAGTAGAGCAGATTAAAATAAAGGATCTTATCTCTATGAAGTT
65 TAATCCTATTTCCCTGAGATTACAGTAGAGCAGATTAAAATAAAAGATCTTATCTCTATGAAGTT
* * * * *
39482849 ATAGTAGAGTAGATCGCATTAGGTCTTATCTCCCTGAGGTTACAGTGGAATAGACCTAAGAATTC
130 ACAGTAGAGTAGATCGCATAAGGTCTTATCCCCCTGAGCTTACAGTGGAATAGACCGAAGAATTC
* *
39482914 CAGATCTTATCTCCCTAAGCAATACTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAGAT
195 CAGATCTTATCTCCCTAAGCAATACTGGAGCTAATCGAAAACGGTGAATCTTATCTCCCTAAGAT
*
39482979 TAT
260 TAC
* * * ** * *
39482982 AACGGAGCAGATTGAAGCCAGCAATCCTATTTTTCTTATATTACAGTGGAGCAGATGAA
1 AGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTAAGATTACAGTGGAGCAGATGAA
39483041 AATAAAGGAT
Statistics
Matches: 282, Mismatches: 38, Indels: 6
0.87 0.12 0.02
Matches are distributed among these distances:
262 5 0.02
263 258 0.91
264 19 0.07
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (262 bp):
AGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTAAGATTACAGTGGAGCAGATGAAGCCAAT
AATCCTATTTCCCTGAGATTACAGTAGAGCAGATTAAAATAAAAGATCTTATCTCTATGAAGTTA
CAGTAGAGTAGATCGCATAAGGTCTTATCCCCCTGAGCTTACAGTGGAATAGACCGAAGAATTCC
AGATCTTATCTCCCTAAGCAATACTGGAGCTAATCGAAAACGGTGAATCTTATCTCCCTAAGATT
AC
Found at i:39482923 original size:219 final size:219
Alignment explanation
Indices: 39482741--39485148 Score: 1804
Period size: 219 Copynumber: 10.9 Consensus size: 219
39482731 TGAAGCCAGT
* * * * * *
39482741 AATCCTATCTCCCTAAGATTACAGTGGAGCAGACTGAAGCCAATAATCCTATTTCCCTGAGATTA
1 AATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* * * *
39482806 CAGTAGAGCAGATTAAAATAAAGGATCTTATCTCTATGAAGTTATAGTAGAGTAGATCGCATTAG
66 CAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
*
39482871 GTCTTATCTCCCTGAGGTTACAGTGGAATAGACCTAAGAATTCCAGATCTTATCTCCCTAAGCA-
131 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCTAAGAATTCCAGATCTTATCTCCCTAAG-AT
*
39482935 ATACTGGAGCTAATCGAAAATGGTG
195 ATAGTGGAGCTAATCGAAAATGGTG
* * ** * *
39482960 AATCTTATCTCCCTGAGATTATAACGGAGCAGATTGAAGCCAGCAATCCTATTTTTCTTATATTA
1 AATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* * * *
39483025 CAGTGGAGCAGATGAAAATAAAGGATCTTATCTCCCTAAAGTTACAGTAGAGTAGATCACATCAG
66 CAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
* * * * * *
39483090 GTTTTATCTCCTTGAGATTACAGTGGAATAGA-CTCAATAAATCCAAATATTATCTCCCTAAGCA
131 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCT-AAGAATTCCAGATCTTATCTCCCTAAG-A
**
39483154 -ATAGTGGAGCTAATAAAAAATGGTG
194 TATAGTGGAGCTAATCGAAAATGGTG
* * * * *
39483179 AATCTGATCTCCCTGAGATTATAGCGGCGCAGATT-AATGCTACTAATCCTATTACCCTGAGATT
1 AATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAA-GCCAGTAATCCTATTTCCCTGAGATT
* * * *
39483243 ATAGTGGAACGGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
65 ACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
* * * * * * * *
39483308 GGTCTTATCTCCCCCTAAGATAACTGTGGAACAGACCGAAGAGTTCCAGATCTTGTCTCCCTCAG
130 GGTCTTATCT--CCCTGAGATTACAGTGGAATAGACCTAAGAATTCCAGATCTTATCTCCCTAAG
* * *
39483373 CA-ATAGTGGAGCAAATCGAAGACGGTG
193 -ATATAGTGGAGCTAATCGAAAATGGTG
* * * * * *
39483400 AATCTTATCTCCATAAGATTACAGCGGAGCAGATTCAAGCCAGTAATCCTATCTGCCTGAGATTA
1 AATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
** * * *** * * * * ** *
39483465 CAGCAGAGCAAATT-GAAGCCAGTAATCCTATTTGC-CTG-AGATTACAGTGGAGCGGAT-GAAA
66 CAGTGGAGCAGATTAAAATAAAG-GATCTTATCT-CTCTGAAG-TTACAGTAGAGTAGATCG--C
* * * * * * * *
39483526 ATAAAGGATCTTATCTCTCT-AAAGTTACAGTAGAGTAGA--T-CGCA-T-CAGGTCTTATCTCC
126 AT-CAGG-TCTTATCTCCCTGAGA-TTACAGTGGAATAGACCTAAGAATTCCAGATCTTATCTCC
* * ** * ***
39483585 CTAGGATTACAGTGGAATTGA-CTGAAGAAATCCAG
188 CTAAGA-TATAGTGGAGCTAATC-G-A-AAATGGTG
* * * ** **** * * *
39483620 -ATCTTATCTCCCTAAGCA--ATAGTGGAGCAAATCAAAAATTGTGAATCTTCTCTCCCTGAGAT
1 AATCTTATCTCCCTGAG-ATTATAGCGGAGCAGATTGAAGCCAGT-AATCCTATTTCCCTGAGAT
* * * *** * * * * * * ** ***
39483682 TACAGCGGAGCAAATT-GAAGCCAGTAATCCTATTTCCCT-TAGATTACAGTGGAACAGATTAAA
64 TACAGTGGAGCAGATTAAAATAAAG-GATCTTATCTCTCTGAAG-TTACAGTAGAGTAGA-TCGC
* * * * * * * * * * *
39483745 ATAAAGGATTTTATCTCTCTGA-AGTTACTGTAGAGTAGA--T-CGCA-T-CAGGTCTGAACTCC
126 AT-CAGG-TCTTATCTCCCTGAGA-TTACAGTGGAATAGACCTAAGAATTCCAGATCTTATCTCC
* * * *
39483804 CTGAGAT-TCCAGTGGA-ATAGACCGAAGAAT--TCC
188 CTAAGATAT--AGTGGAGCTA-ATCGAA-AATGGT-G
* * * **** * *
39483837 AGATCTTATCTCCCTAAGCA--ATAGTGGAGCTA-ATCGAAAATGGTGAATCTTATCTCCCTGAG
1 A-ATCTTATCTCCCTGAG-ATTATAGCGGAGC-AGATTGAAGCCAGT-AATCCTATTTCCCTGAG
** * * * * * *
39483899 ATTACAGCAGAGAAGATTGAAGCTAGTAAGAAGCTAGTAATCCTATTTCCCTG-AGATTACAGTG
62 ATTACAGTGGAGCAGATT-AA---AAT-A-AAG---G--ATCTTATCTCTCTGAAG-TTACAGTA
*** * * * * * * *
39483963 GAAG-AGATTAAAATAAAGGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGA--TCA-CA-TCA
115 G-AGTAGA-TCGCAT-CAGG-TCTTATCTCCCTGAGA-TTACAGTGGAATAGACCTAAGAATTCC
* * * * * * * * * *
39484022 AG-TTTTACCTTCTTGAGATTACAGTGGA-ATAGACCGAAGAAT-TTT
175 AGATCTTATCTCCCTAAGA-TATAGTGGAGCTA-ATCGAA-AATGGTG
* * * * *
39484067 AGATCTTATCTCCCTGAGATTATAGCGGAGCAGGTTAAAGCTAGTAATCATATTACCCTGAGATT
1 A-ATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATT
* * * * *
39484132 ACAGTGGAACGGATTAAAGTAAATGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
65 ACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
* * * *
39484197 GGTCTTATCTCCTTGAGATTACAGTGGAATAGACCTAGGAATTCCAGATCTTATCTCTCTAAGAA
130 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCTAAGAATTCCAGATCTTATCTCCCTAAGAT
39484262 ATAGTGGAGCTAATCGAAAATGGTG
195 ATAGTGGAGCTAATCGAAAATGGTG
* * * * *
39484287 AATCTTATCTCCCTGAGATTAGAACGAAGCAGATTGAAGCTAGCAATCCTATTTCCCTGAGATTA
1 AATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* *
39484352 CAATGGA--ATGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTATAGTAGAGTAGATCGCATC
66 CAGTGGAGCA-G-ATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
* *
39484415 AGGTCTTACCTCCCAGAGATTAC-GCTGGAATAGACCTAAGAATTCCAGATCTTATCTCCCTAAG
129 AGGTCTTATCTCCCTGAGATTACAG-TGGAATAGACCTAAGAATTCCAGATCTTATCTCCCTAAG
*
39484479 AAATAGTGGAGCTAATCGAAAATGGTG
193 ATATAGTGGAGCTAATCGAAAATGGTG
** *
39484506 AATCTTATCTCCCTGAGATTACGGCAGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
1 AATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* * * *
39484571 CAGTAGAACGGATTAAAATAAAGGATCTTATCGCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
* *
39484636 GTCTTATCTCTCTGAGATTACAGTGGAATAGA-CTGAAGAAATCCAGATCTTATCTCCCTAAGCA
131 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCT-AAGAATTCCAGATCTTATCTCCCTAAG-A
39484700 -ATAGTGGAGCTAATCGAAAATGGTG
194 TATAGTGGAGCTAATCGAAAATGGTG
* * * *
39484725 AATCTTCTCTCCCTGAGATTATAACAGAGCAGATTGAAGCCAGTAATCCTATTTCCCTTAGATTA
1 AATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* * *
39484790 CAGTGGAACAGATTAAAATAAAGGATTTTATCTCTCTGAAGTTACTGTAGAGTAGATCGCATCAG
66 CAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
* * * *
39484855 GTCTGAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCA-
131 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCTAAGAATTCCAGATCTTATCTCCCTAAG-AT
*
39484919 ATAGTGGAGCTAATCAAAAATGGTG
195 ATAGTGGAGCTAATCGAAAATGGTG
* * * *
39484944 AATCTTATCTCCCTGAGATTACAGCAGAGAAGATTGAAGCTAGTAATCCTATTTCCCTGAGATTA
1 AATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* * *
39485009 CAGTGGAAG-AGATTAAAATAAAGGATCTTATCACTCTGAAGTTACAGTATAGTAGATCGCAACA
66 CAGTGG-AGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
* * * * * * ** * *
39485073 AGTTTTACCTTCTTGAGATTACAGTGGAATAGACCGAAGAATTTTAGAACTTATCTCCCTGAGAT
130 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCTAAGAATTCCAGATCTTATCTCCCTAAGA-
*
39485138 TATAGCGGAGC
194 TATAGTGGAGC
39485149 AGGTTAAAGC
Statistics
Matches: 1814, Mismatches: 297, Indels: 155
0.80 0.13 0.07
Matches are distributed among these distances:
216 26 0.01
217 21 0.01
218 47 0.03
219 1302 0.72
220 49 0.03
221 157 0.09
222 19 0.01
223 3 0.00
224 11 0.01
225 1 0.00
226 5 0.00
229 3 0.00
230 150 0.08
231 20 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (219 bp):
AATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
CAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
GTCTTATCTCCCTGAGATTACAGTGGAATAGACCTAAGAATTCCAGATCTTATCTCCCTAAGATA
TAGTGGAGCTAATCGAAAATGGTG
Found at i:39483453 original size:44 final size:44
Alignment explanation
Indices: 39483415--39483517 Score: 161
Period size: 44 Copynumber: 2.3 Consensus size: 44
39483405 TATCTCCATA
*
39483415 AGATTACAGCGGAGCAGATTCAAGCCAGTAATCCTATCTGCCTG
1 AGATTACAGCGGAGCAAATTCAAGCCAGTAATCCTATCTGCCTG
* * *
39483459 AGATTACAGCAGAGCAAATTGAAGCCAGTAATCCTATTTGCCTG
1 AGATTACAGCGGAGCAAATTCAAGCCAGTAATCCTATCTGCCTG
*
39483503 AGATTACAGTGGAGC
1 AGATTACAGCGGAGC
39483518 GGATGAAAAT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 53 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.23
Consensus pattern (44 bp):
AGATTACAGCGGAGCAAATTCAAGCCAGTAATCCTATCTGCCTG
Found at i:39483552 original size:484 final size:482
Alignment explanation
Indices: 39482960--39483927 Score: 1382
Period size: 484 Copynumber: 2.0 Consensus size: 482
39482950 GAAAATGGTG
* * * * ** * *
39482960 AATCTTATCTCCCTGAGATTATAACGGAGCAGATTGAAGCCAGCAATCCTATTTTTCTTATATTA
1 AATCCTATCTCCCTGAGATTACAACAGAGCAAATTGAAGCCAGCAATCCTATTTGCCTGAGATTA
39483025 CAGTGGAGCAGATGAAAATAAAGGATCTTATCTCCCTAAAGTTACAGTAGAGTAGATCACATCAG
66 CAGTGGAGCAGATGAAAATAAAGGATCTTATCTCCCTAAAGTTACAGTAGAGTAGATCACATCAG
* * *
39483090 GTTTTATCT-CCTTGAGATTACAGTGGAATAGACTCAATAAATCCAAATATTATCTCCCTAAGCA
131 GTCTTATCTCCCTAG-GATTACAGTGGAATAGACTCAAGAAATCCAAATATTATCTCCCTAAGCA
* * * *
39483154 ATAGTGGAGCTAATAAAAAATGGTGAATCTGATCTCCCTGAGATTATAGCGGCGCAGATT-AATG
195 ATAGTGGAGCAAATAAAAAATGGTGAATCTGATCTCCCTGAGATTACAGCGGAGCAAATTGAA-G
* * *
39483218 CTACTAATCCTATTACCCTGAGATTATAGTGGAACGGATTAAAATAAAGGATATTATCTCTCTGA
259 CCACTAATCCTATTACCCTGAGATTACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGA
* * *
39483283 AGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCCCTAAGATAACTGTGGAACAGACCGAA
324 AGTTACAGTAGAGTAGATCGCATCAGGTCTGAACT--CCCTAAGATAACAGTGGAACAGACCGAA
* * * *
39483348 GAGTTCCAGATCTTGTCTCCCTCAGCAATAGTGGAGCAAATCGAAGACGGTGAATCTTATCTCCA
387 GAATTCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATCGAAAACGGTGAATCTTATCTCCA
* *
39483413 TAAGATTACAGCGGAGCAGATTCAAGCCAGT
452 TAAGATTACAGCAGAGAAGATTCAAGCCAGT
* * *
39483444 AATCCTATCTGCCTGAGATTACAGCAGAGCAAATTGAAGCCAGTAATCCTATTTGCCTGAGATTA
1 AATCCTATCTCCCTGAGATTACAACAGAGCAAATTGAAGCCAGCAATCCTATTTGCCTGAGATTA
* * *
39483509 CAGTGGAGCGGATGAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGGAGCAGATGAAAATAAAGGATCTTATCTCCCTAAAGTTACAGTAGAGTAGATCACATCAG
* * * *
39483574 GTCTTATCTCCCTAGGATTACAGTGGAATTGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAA
131 GTCTTATCTCCCTAGGATTACAGTGGAATAGACTCAAGAAATCCAAATATTATCTCCCTAAGCAA
* * **
39483639 TAGTGGAGCAAATCAAAAATTGTGAATCTTCTCTCCCTGAGATTACAGCGGAGCAAATTGAAGCC
196 TAGTGGAGCAAATAAAAAATGGTGAATCTGATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCC
* * * *
39483704 AGTAATCCTATTTCCCTTAGATTACAGTGGAACAGATTAAAATAAAGGATTTTATCTCTCTGAAG
261 ACTAATCCTATTACCCTGAGATTACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAG
* * ** *
39483769 TTACTGTAGAGTAGATCGCATCAGGTCTGAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAAT
326 TTACAGTAGAGTAGATCGCATCAGGTCTGAACTCCCTAAGATAACAGTGGAACAGACCGAAGAAT
* * * *
39483834 TCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAG
391 TCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATCGAAAACGGTGAATCTTATCTCCATAAG
* *
39483899 ATTACAGCAGAGAAGATTGAAGCTAGT
456 ATTACAGCAGAGAAGATTCAAGCCAGT
39483926 AA
1 AA
39483928 GAAGCTAGTA
Statistics
Matches: 426, Mismatches: 56, Indels: 6
0.87 0.11 0.01
Matches are distributed among these distances:
482 109 0.26
484 311 0.73
485 6 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (482 bp):
AATCCTATCTCCCTGAGATTACAACAGAGCAAATTGAAGCCAGCAATCCTATTTGCCTGAGATTA
CAGTGGAGCAGATGAAAATAAAGGATCTTATCTCCCTAAAGTTACAGTAGAGTAGATCACATCAG
GTCTTATCTCCCTAGGATTACAGTGGAATAGACTCAAGAAATCCAAATATTATCTCCCTAAGCAA
TAGTGGAGCAAATAAAAAATGGTGAATCTGATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCC
ACTAATCCTATTACCCTGAGATTACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAG
TTACAGTAGAGTAGATCGCATCAGGTCTGAACTCCCTAAGATAACAGTGGAACAGACCGAAGAAT
TCCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATCGAAAACGGTGAATCTTATCTCCATAAG
ATTACAGCAGAGAAGATTCAAGCCAGT
Found at i:39483729 original size:263 final size:264
Alignment explanation
Indices: 39483185--39483730 Score: 745
Period size: 263 Copynumber: 2.1 Consensus size: 264
39483175 GGTGAATCTG
* * * * * * *
39483185 ATCTCCCTGAGATTATAGCGGCGCAGATT-AATGCTACTAATCCTATTACCCTGAGATTATAGTG
1 ATCTCCCTGAGATTACAGCAGAGCAAATTGAA-GCCAGTAATCCTATTACCCTGAGATTACAGTG
* *
39483249 GAACGGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
65 GAACGGATGAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
* ** * *
39483314 ATCTCCCCCTAAGATAACTGTGGAACAGACCGAAGAGTTCCAGATCTTGTCTCCCTCAGCAATAG
130 ATCT-CCCCTAAGATAACAGTGGAACAGACCGAAGAAATCCAGATCTTATCTCCCTAAGCAATAG
* * *
39483379 TGGAGCAAATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTCAAGCCAGT
194 TGGAGCAAATCAAAAACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAAATTCAAGCCAGT
39483444 AATCCT
259 AATCCT
* **
39483450 ATCTGCCTGAGATTACAGCAGAGCAAATTGAAGCCAGTAATCCTATTTGCCTGAGATTACAGTGG
1 ATCTCCCTGAGATTACAGCAGAGCAAATTGAAGCCAGTAATCCTATTACCCTGAGATTACAGTGG
* *
39483515 AGCGGATGAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTA
66 AACGGATGAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTA
* * ** *
39483580 TCT-CCCTAGGATTACAGTGGAATTGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTG
131 TCTCCCCTAAGATAACAGTGGAACAGACCGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTG
** * * * *
39483644 GAGCAAATCAAAAATTGTGAATCTTCTCTCCCTGAGATTACAGCGGAGCAAATTGAAGCCAGTAA
196 GAGCAAATCAAAAACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAAATTCAAGCCAGTAA
39483709 TCCT
261 TCCT
* *
39483713 ATTTCCCTTAGATTACAG
1 ATCTCCCTGAGATTACAG
39483731 TGGAACAGAT
Statistics
Matches: 244, Mismatches: 36, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
263 126 0.52
265 116 0.48
266 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (264 bp):
ATCTCCCTGAGATTACAGCAGAGCAAATTGAAGCCAGTAATCCTATTACCCTGAGATTACAGTGG
AACGGATGAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTA
TCTCCCCTAAGATAACAGTGGAACAGACCGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTG
GAGCAAATCAAAAACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAAATTCAAGCCAGTAA
TCCT
Found at i:39484220 original size:175 final size:175
Alignment explanation
Indices: 39483929--39484253 Score: 508
Period size: 175 Copynumber: 1.9 Consensus size: 175
39483919 AGCTAGTAAG
* * *
39483929 AAGCTAGTAATCCTATTTCCCTGAGATTACAGTGGAAGAGATTAAAATAAAGGATCTTATCTCTC
1 AAGCTAGTAATCATATTACCCTGAGATTACAGTGGAAGAGATTAAAATAAAGGATATTATCTCTC
* *
39483994 TGAAGTTACAGTAGAGTAGATCACATCAAGTTTTACCTTCTTGAGATTACAGTGGAATAGACCGA
66 TGAAGTTACAGTAGAGTAGATCACATCAAGTCTTACCTCCTTGAGATTACAGTGGAATAGACCGA
**
39484059 AGAATTTTAGATCTTATCTCCCTGAGATTATAGCGGAGCAGGTTA
131 AGAATTCCAGATCTTATCTCCCTGAGATTATAGCGGAGCAGGTTA
* *
39484104 AAGCTAGTAATCATATTACCCTGAGATTACAGTGGAACG-GATTAAAGTAAATGATATTATCTCT
1 AAGCTAGTAATCATATTACCCTGAGATTACAGTGGAA-GAGATTAAAATAAAGGATATTATCTCT
* * * *
39484168 CTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCTTGAGATTACAGTGGAATAGACCT
65 CTGAAGTTACAGTAGAGTAGATCACATCAAGTCTTACCTCCTTGAGATTACAGTGGAATAGACCG
*
39484233 AGGAATTCCAGATCTTATCTC
130 AAGAATTCCAGATCTTATCTC
39484254 TCTAAGAAAT
Statistics
Matches: 135, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
175 134 0.99
176 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.31
Consensus pattern (175 bp):
AAGCTAGTAATCATATTACCCTGAGATTACAGTGGAAGAGATTAAAATAAAGGATATTATCTCTC
TGAAGTTACAGTAGAGTAGATCACATCAAGTCTTACCTCCTTGAGATTACAGTGGAATAGACCGA
AGAATTCCAGATCTTATCTCCCTGAGATTATAGCGGAGCAGGTTA
Found at i:39484303 original size:175 final size:174
Alignment explanation
Indices: 39483933--39484307 Score: 461
Period size: 175 Copynumber: 2.1 Consensus size: 174
39483923 AGTAAGAAGC
* *
39483933 TAGTAATCCTATTTCCCTGAGATTACAGTGGAAGAGATTAAAATAAAGGATCTTATCTCTCTGAA
1 TAGTAATCATA-TTCCCTGAGATTACAGTGGAAGAGATTAAAATAAAGGATATTATCTCTCTGAA
* *
39483998 GTTACAGTAGAGTAGATCACATCAAGTTTTACCTTCTTGAGATTACAGTGGAATAGACCGAAGAA
65 GTTACAGTAGAGTAGATCACATCAAGTCTTACCTCCTTGAGATTACAGTGGAATAGACCGAAGAA
** * * * * *
39484063 TTTTAGATCTTATCTCCCTGAGATTATAGCGGAGCAGGTTAAAGC
130 TTCCAGATCTTATCTCCCTAAGATAATAGCGGAGCAGATGAAAGA
* *
39484108 TAGTAATCATATTACCCTGAGATTACAGTGGAACG-GATTAAAGTAAATGATATTATCTCTCTGA
1 TAGTAATCATATT-CCCTGAGATTACAGTGGAA-GAGATTAAAATAAAGGATATTATCTCTCTGA
* * * * *
39484172 AGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCTTGAGATTACAGTGGAATAGACCTAGGA
64 AGTTACAGTAGAGTAGATCACATCAAGTCTTACCTCCTTGAGATTACAGTGGAATAGACCGAAGA
* *
39484237 ATTCCAGATCTTATCTCTCTAAGA-AATAGTGGAGCTA-ATCGAAA-A
129 ATTCCAGATCTTATCTCCCTAAGATAATAGCGGAGC-AGAT-GAAAGA
* *
39484282 TGGTGAATCTTATCTCCCTGAGATTA
1 TAGT-AATCATAT-TCCCTGAGATTA
39484308 GAACGAAGCA
Statistics
Matches: 172, Mismatches: 22, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
174 15 0.09
175 155 0.90
176 2 0.01
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (174 bp):
TAGTAATCATATTCCCTGAGATTACAGTGGAAGAGATTAAAATAAAGGATATTATCTCTCTGAAG
TTACAGTAGAGTAGATCACATCAAGTCTTACCTCCTTGAGATTACAGTGGAATAGACCGAAGAAT
TCCAGATCTTATCTCCCTAAGATAATAGCGGAGCAGATGAAAGA
Found at i:39485128 original size:613 final size:611
Alignment explanation
Indices: 39484507--39487855 Score: 2423
Period size: 613 Copynumber: 5.5 Consensus size: 611
39484497 AAAATGGTGA
* * *
39484507 ATCTTATCTCCCTGAGATTACGGCAGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTA-AGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTAC
* * *
39484572 AGTAGAACGGATTAAAATAAAGGATCTTATCGCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
65 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
*
39484637 TCTTATCTCTCTGAGATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAAT
130 TCTTATCTCCCTGAGATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAAT
* * * *
39484702 AGTGGAGCTA-ATCGAAAATGGTGAATCTTCTCTCCCTGAGATTATAACAGAGCAGATTGAAGCC
195 AGTGGAGCTAGATCGAAAATGGTGAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCC
* * *
39484766 AGTAATCCTATTTCCCTTAGATTACAGTGGAACAGATTAAAATAAAGGATTTTATCTCTCTGAAG
260 AGTAATCCTATCTCCCTGAGATTACAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAAG
*
39484831 TTACTGTAGAGTAGATCGCATCAGGTCTGAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAAT
325 TTACTGTAGAGTAGATCGCATCAGGTCTGAACTCCCTGAGATTACAGTGGAATAGACCGAAGAAT
39484896 TCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAG
390 TCCAGATCTTATCTCCCTAAG-AATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAG
* *
39484961 ATTACAGCAGAGAAGATTGAAGCTAGTAATCCTATTTCCCTGAGATTACAGTGGAAGAGATTAAA
454 ATTACAGCAGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTGGAAG-GATTAAA
* * * * * * * *
39485026 ATAAAGGATCTTATCACTCTGAAGTTACAGTATAGTAGATCGCAACAAGTTTTACCTTCTTGAGA
518 ATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGA
**
39485091 TTACAGTGGAATAGACCGAAGAATTTTAG
583 TTACAGTGGAATAGACCGAAGAATTCCAG
* * * *
39485120 AACTTATCTCCCTGAGATTATAGCGGAGCAGGTTAAAGCTAGTAATCCTAT-TACCCTGAGATTA
1 ATCTTATCTCCCTGAGATTA-AGCGGAGCAGATTGAAGCCAGTAATCCTATCT-CCCTGAGATTA
** * * *
39485184 CAGTGGAATGGATTAAAGTAAATGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
64 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
* * * * * *
39485249 GTCTTATCTCCTTGAGATTGCAGTGGAATAGACCT-AGGAATTCCAGATCTTATCTCTCTAAGAA
129 GTCTTATCTCCCTGAGATTACAGTGGAATAGA-CTGAAGAAATCCAGATCTTATCTCCCTAAGCA
* * *
39485313 ATAGTGGAGCTA-ATCGAAAATGGTGAATCTTATCTCCCTGAGATTAGAACGAAGCAGATTGAAG
193 ATAGTGGAGCTAGATCGAAAATGGTGAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG
* * * *
39485377 CTAGCAATCCTATTTCCCTGAGATTACAGTGGAA-TGAATTAAAATAAAGGATCTTATCTCTCTG
258 CCAGTAATCCTATCTCCCTGAGATTACAGTGGAACAG-ATTAAAATAAAGGATCTTATCTCTCTG
* * * * *
39485441 AAGTTA-TAGTAGAGTAGATCGCATCAGGTCTTACCCCCCAGAGATTAC-GCTGGAATAGACCTA
322 AAGTTACT-GTAGAGTAGATCGCATCAGGTCTGAACTCCCTGAGATTACAG-TGGAATAGACCGA
* **
39485504 AGAATTCCAGATCTTATCTCCCTAAGAAATAGTGGAGCTAATCGAAAATGGTGAATCTTATCTTT
385 AGAATTCCAGATCTTATCTCCCTAAG-AATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCC
* * *
39485569 CTAAGATTACGGCAGAGCAGATTGAAGCCAGTAATCCTATTTCCTTGAGATTACAGTGGAACGGA
449 CTGAGATTACAGCAGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTGGAA-GGA
*
39485634 TTAAAATAAAGGATCTTATCGCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCC
513 TTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCC
* * * *
39485699 TAAGATTATAGTAGAATACACCGAAGAATTCCAG
578 TGAGATTACAGTGGAATAGACCGAAGAATTCCAG
* * * * * **** * **
39485733 ATCTTATCTCCATAAGCAAT-AGTGGAGCTA-ATCGAAAATGGTGAATCTTATCTCATTGAGATT
1 ATCTTATCTCCCTGAG-ATTAAGCGGAGC-AGATTGAAGCCAGT-AATCCTATCTCCCTGAGATT
* * * ** * * * * * *** **
39485796 ATAGCGGAGCAGATTGAAGCT--AGTAATCCTATTTCCCCT--AGATTACAGTGGAACGGATTAA
63 ACAGTGGAGCGGATT-AAAATAAAG-GATCTTATCT-CTCTGAAG-TTACAGTAGAGTAGA-TCG
* * * * * * * * * *
39485857 AATAAAGGATCTTATCTCTCTGA-AGTTATAGTAGAGTAGA-T--TG-CATCTAG-TCTTATCTG
123 CAT-CAGG-TCTTATCTCCCTGAGA-TTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTC
* * * * * * * * * *
39485916 CTTGAG-ATTACAGTGGA-ATAGACCGAAGAAT--TCCATATCATATCTCCC-GAAGA-AATAGT
185 CCTAAGCA--ATAGTGGAGCTAGATCGAA-AATGGT-GA-ATCTTATCTCCCTG-AGATTACAGC
* **** * * * * * ***
39485975 GGAGCTA-ATCGAAAATGGTGAATCTTATCTCCCTGAGATTACAGCGGAGCAAATT-GAAGCCAG
244 GGAGC-AGATTGAAGCCAGT-AATCCTATCTCCCTGAGATTACAGTGGAACAGATTAAAATAAAG
* * * * * * *** * * * * * * *
39486038 TAACCCTAT-TTTCCT-AAGATTACAGTGGAACGGAT-GAAAATAAAGAATCTTATCTCTCTTA-
307 -GATCTTATCTCT-CTGAAG-TTACTGTAGAGTAGATCG--CAT-CAG-GTCTGAACTCCCTGAG
* * * * * * * *
39486099 AGTTACAGTAGAGTAGATC---GCA-T-CAGGTCTTATCTCCCTGAGATTATAGTGGA-ATAGAC
365 A-TTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGA--ATAGTGGAGCTA-AT
** * * * * *
39486158 CGAGGAAT-TTCAGATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTAT
426 C-AAAAATGGTGA-ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGTAATCCTAT
* * * *
39486222 CTCCCTAAGATTACAGTGG-AGCGAATTAAAATAAAGGATCTTACCTCTCTGAAGTTATAGTAGA
489 TTCCCTGAGATTACAGTGGAAG-G-ATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGA
* *
39486286 GTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAATAGTTCCAG
552 GTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
* * * * * * *
39486346 ATCTTGTCTCCCTGAGCAAT-AGTGGAGCAGATTGAAGACAGTGAATCTTATCTCCATAAGATTA
1 ATCTTATCTCCCTGAG-ATTAAGCGGAGCAGATTGAAGCCAGT-AATCCTATCTCCCTGAGATTA
* * * ** * * * ** * * *
39486410 CAGCGGAGCAGATT--GATGCCAGTAATCCTATCTCCCTG-AGATTACAGCGGAGCAGATTGAAC
64 CAGTGGAGCGGATTAAAAT-AAAG-GATCTTATCTCTCTGAAG-TTACAGTAGAGTAGATCGCA-
* ** * * * * * * *
39486472 CCAATAATCCTATCTCCCTGAGATTACAGCGGAGA-AAATTGAAGCAAGT--A-ATCCTATTTCC
125 TC-A-GGTCTTATCTCCCTGAGATTACAGTGGA-ATAGACTGAAG-AAATCCAGATCTTATCTCC
** *** * * **
39486533 CTGATA-TTATAGTGGAG-TAGAT-GAAAATAAAGAATCTTATCTCTCT-AAAGTTACAGTAGAG
186 CT-A-AGCAATAGTGGAGCTAGATCGAAAATGGTGAATCTTATCTCCCTGAGA-TTACAGCGGAG
* * * * * * * * * * * * *
39486594 TAGATCGCA-TCAG--GTCTTATCTCCATGAGATTACAGCGGAATAAACT-GAATAAATCTAGAT
248 CAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTGGAACAGATTAAAATAAA---GGAT
* * * * * *** * *
39486655 CTTATATCCCT-AAG-CAATAGTGGAGCTA-ATAAAAAAT-GGTGAATCTGATCTCCCTGAGATT
310 CTTATCTCTCTGAAGTTACT-GTAGAG-TAGAT--CGCATCAG-G--TCTGAACTCCCTGAGATT
* * * ** * * * * * * ** *
39486716 ----T-TAACAGAGCAGATTAATGCTAGTAATCCTAT-TACCCTGAGATTACAGTGGAACGGATT
368 ACAGTGGAATAGA-CCGAAGAATTCCAG--ATCTTATCT-CCCTAAGA--ATAGTGGAGCTAATC
** * * * * * * * * *
39486775 AAAATAAAG-G-ATATTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCA-TCAG--GTCTTATT
427 AAAA-ATGGTGAATCTTATCTCCCTGAGA-TTACAGCAGAGCAGATTGAAGCCAGTAATCCTATT
* *** * ** * ** * *
39486834 TCCCTGAGATTACTGTGGAATAGGCCGAAGAGTTCCA-GATCTTGTCT-TCCTG-AGCAATAGTG
490 TCCCTGAGATTACAGTGG-A-AGGATTAA-A-ATAAAGGATCTTATCTCT-CTGAAGTTACAGTA
* * * *** * ** **
39486896 GAGCAGATCGAAGAT-GGTGAATCTTATCTCCAAAAGATTACAGCGGAGCAGATTGAAG----CC
550 GAGTAGATCG--CATCAG-G--TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCC
39486956 AG
610 AG
* * * * *
39486958 TAATCCTATCTCCCCGAGATTATAGCGGAGCAAATTGAAGCCAGTAATCCTATTTGCCTGAGATT
1 --ATCTTATCTCCCTGAGATTA-AGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATT
* * * *
39487023 ACAGTAGAGCGGATGAAAATAAAGGATTTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCA
63 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
* *
39487088 GGTCTTATCTCCCTGAGATTATAGTGGAATAGACTGAAGAAATCCAGATCTTATCTACCTAAGCA
128 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCA
* * * *
39487153 ATAGTGGAGC-AAATCAAAAATTGTGAATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAG
193 ATAGTGGAGCTAGATCGAAAATGGTGAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG
* * *
39487217 CCAGTAATCCTATTTCCCTTAGATTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGA
258 CCAGTAATCCTATCTCCCTGAGATTACAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGA
* * * * *
39487282 ATTTACAGTAGAGTAGATTGCATCAGGTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAGA
323 AGTTACTGTAGAGTAGATCGCATCAGGTCTGAACTCCCTGAGATTACAGTGGAATAGACCGAAGA
* *
39487347 ATTCCAGATCTTATCTCTCTAAGCAATAGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTG
388 ATTCCAGATCTTATCTCCCTAAG-AATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTG
* *
39487412 AGATTACAGTAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTACAGTGGAACGGATTA
452 AGATTACAGCAGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTGGAA-GGATTA
* *
39487477 GAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGA
516 AAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGA
* *
39487542 GATTATAGTGGAATAGACCGAAGAATTTCAG
581 GATTACAGTGGAATAGACCGAAGAATTCCAG
* * *
39487573 ATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTAC
1 ATCTTATCTCCCTGAGATTA-AGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTAC
* * *
39487638 AGTGGAGCGAATTAAAATAAAGGACCTTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
65 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* * * ** * *
39487703 TCTTATCTCCCTCAGATTACAGTGGAATAGACCGAATAGTTCCAGATCTTGTCTCCCTGAGCAAT
130 TCTTATCTCCCTGAGATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAAT
* * * *
39487768 AGTGGAGC-AGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCC
195 AGTGGAGCTAGATCGAAAATGGTGAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCC
39487832 AGTAATCCTATCTCCCTGAGATTA
260 AGTAATCCTATCTCCCTGAGATTA
39487856 TAGCGGAGCA
Statistics
Matches: 2093, Mismatches: 491, Indels: 304
0.72 0.17 0.11
Matches are distributed among these distances:
608 4 0.00
609 1 0.00
610 8 0.00
611 167 0.08
612 144 0.07
613 1320 0.63
614 177 0.08
615 91 0.04
616 172 0.08
617 7 0.00
618 2 0.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (611 bp):
ATCTTATCTCCCTGAGATTAAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACA
GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGT
CTTATCTCCCTGAGATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATA
GTGGAGCTAGATCGAAAATGGTGAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCA
GTAATCCTATCTCCCTGAGATTACAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAAGT
TACTGTAGAGTAGATCGCATCAGGTCTGAACTCCCTGAGATTACAGTGGAATAGACCGAAGAATT
CCAGATCTTATCTCCCTAAGAATAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCCCTGAGAT
TACAGCAGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTGGAAGGATTAAAATA
AAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTA
CAGTGGAATAGACCGAAGAATTCCAG
Found at i:39485247 original size:394 final size:394
Alignment explanation
Indices: 39484732--39485526 Score: 1182
Period size: 394 Copynumber: 2.0 Consensus size: 394
39484722 GTGAATCTTC
* * *
39484732 TCTCCCTGAGATTATAACAGAGCAGATTGAAGCCAGTAATCCTATTTCCCTTAGATTACAGTGGA
1 TCTCCCTGAGATTATAACAGAGCAGATTAAAGCCAGTAATCCTATTACCCTGAGATTACAGTGGA
* *
39484797 ACAGATTAAAATAAAGGATTTTATCTCTCTGAAGTTACTGTAGAGTAGATCGCATCAGGTCTGAA
66 ACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTGAA
*
39484862 CTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTGGA
131 CTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGAAATAGTGGA
* *
39484927 GCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTACAGC-AGAGAAGATTGAAGCTAGTAAT
196 GCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTACAACGA-AGAAGATTGAAGCTAGCAAT
39484991 CCTATTTCCCTGAGATTACAGTGGAA-GAGATTAAAATAAAGGATCTTATCACTCTGAAGTTACA
260 CCTATTTCCCTGAGATTACAGTGGAATGA-ATTAAAATAAAGGATCTTATCACTCTGAAGTTACA
* * ** ** **
39485055 GTATAGTAGATCGCAACAAGTTTTACCTTCTTGAGATTACAG-TGGAATAGACCGAAGAATTTTA
324 GTAGAGTAGATCGCAACAAGTCTTACCCCCCAGAGATTAC-GCTGGAATAGACCGAAGAATTCCA
39485119 GAACTTA
388 GAACTTA
* * * *
39485126 TCTCCCTGAGATTATAGCGGAGCAGGTTAAAGCTAGTAATCCTATTACCCTGAGATTACAGTGGA
1 TCTCCCTGAGATTATAACAGAGCAGATTAAAGCCAGTAATCCTATTACCCTGAGATTACAGTGGA
** * * * *
39485191 ATGGATTAAAGTAAATGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTAT
66 ACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTGAA
* * * * *
39485256 CTCCTTGAGATTGCAGTGGAATAGACCTAGGAATTCCAGATCTTATCTCTCTAAGAAATAGTGGA
131 CTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGAAATAGTGGA
* * *
39485321 GCTAATCGAAAATGGTGAATCTTATCTCCCTGAGATTAGAACGAAGCAGATTGAAGCTAGCAATC
196 GCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTACAACGAAGAAGATTGAAGCTAGCAATC
* *
39485386 CTATTTCCCTGAGATTACAGTGGAATGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTATAGT
261 CTATTTCCCTGAGATTACAGTGGAATGAATTAAAATAAAGGATCTTATCACTCTGAAGTTACAGT
* * * *
39485451 AGAGTAGATCGCATCAGGTCTTACCCCCCAGAGATTACGCTGGAATAGACCTAAGAATTCCAGAT
326 AGAGTAGATCGCAACAAGTCTTACCCCCCAGAGATTACGCTGGAATAGACCGAAGAATTCCAGAA
39485516 CTTA
391 CTTA
39485520 TCTCCCT
1 TCTCCCT
39485527 AAGAAATAGT
Statistics
Matches: 358, Mismatches: 40, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
393 1 0.00
394 354 0.99
395 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (394 bp):
TCTCCCTGAGATTATAACAGAGCAGATTAAAGCCAGTAATCCTATTACCCTGAGATTACAGTGGA
ACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTGAA
CTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGAAATAGTGGA
GCTAATCAAAAATGGTGAATCTTATCTCCCTGAGATTACAACGAAGAAGATTGAAGCTAGCAATC
CTATTTCCCTGAGATTACAGTGGAATGAATTAAAATAAAGGATCTTATCACTCTGAAGTTACAGT
AGAGTAGATCGCAACAAGTCTTACCCCCCAGAGATTACGCTGGAATAGACCGAAGAATTCCAGAA
CTTA
Found at i:39485303 original size:175 final size:175
Alignment explanation
Indices: 39484945--39485304 Score: 506
Period size: 175 Copynumber: 2.1 Consensus size: 175
39484935 AAAATGGTGA
* *
39484945 ATCTTATCTCCCTGAGATTACAGCAGAGAAGATTGAAGCTAGTAATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCAGAGAAGATTAAAGCTAGTAATCCTATTACCCTGAGATTAC
* *
39485010 AGTGGAAGAGATTAAAATAAAGGATCTTATCACTCTGAAGTTACAGTATAGTAGATCGCAACAAG
66 AGTGGAAGAGATTAAAATAAAGGATATTATCACTCTGAAGTTACAGTAGAGTAGATCGCAACAAG
* * **
39485075 TTTTACCTTCTTGAGATTACAGTGGAATAGACCGAAGAATTTTAG
131 TCTTACCTCCTTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
* * * * *
39485120 AACTTATCTCCCTGAGATTATAGCGGAGCAGGTTAAAGCTAGTAATCCTATTACCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCAGAGAAGATTAAAGCTAGTAATCCTATTACCCTGAGATTAC
* * * * *
39485185 AGTGGAATG-GATTAAAGTAAATGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
66 AGTGGAA-GAGATTAAAATAAAGGATATTATCACTCTGAAGTTACAGTAGAGTAGATCGCAACAA
* * * *
39485249 GTCTTATCTCCTTGAGATTGCAGTGGAATAGACCTAGGAATTCCAG
130 GTCTTACCTCCTTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
39485295 ATCTTATCTC
1 ATCTTATCTC
39485305 TCTAAGAAAT
Statistics
Matches: 161, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
175 160 0.99
176 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (175 bp):
ATCTTATCTCCCTGAGATTACAGCAGAGAAGATTAAAGCTAGTAATCCTATTACCCTGAGATTAC
AGTGGAAGAGATTAAAATAAAGGATATTATCACTCTGAAGTTACAGTAGAGTAGATCGCAACAAG
TCTTACCTCCTTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
Found at i:39485354 original size:175 final size:174
Alignment explanation
Indices: 39484947--39485358 Score: 438
Period size: 175 Copynumber: 2.4 Consensus size: 174
39484937 AATGGTGAAT
* * * * * *
39484947 CTTATCTCCCTGAGATTACAGCAGAGAAGATTG-AAGCTAGTAATCCTATTTCCCTGAGATTACA
1 CTTATCTCCCTAAGATAATAGCGGAGCAGA-TGAAAGATAGTAATCCTA-TTCCCTGAGATTACA
* *
39485011 GTGGAAGAGATTAAAATAAAGGATCTTATCACTCTGAAGTTACAGTATAGTAGATCGCAACAAGT
64 GTGGAAGAGATTAAAATAAAGGATATTATCACTCTGAAGTTACAGTAGAGTAGATCGCAACAAGT
* * **
39485076 TTTACCTTCTTGAGATTACAGTGGAATAGACCGAAGAATTTTAGAA
129 CTTACCTCCTTGAGATTACAGTGGAATAGACCGAAGAATTCCAGAA
* * * * *
39485122 CTTATCTCCCTGAGATTATAGCGGAGCAGGTTAAAGCTAGTAATCCTATTACCCTGAGATTACAG
1 CTTATCTCCCTAAGATAATAGCGGAGCAGATGAAAGATAGTAATCCTATT-CCCTGAGATTACAG
* * * * *
39485187 TGGAATG-GATTAAAGTAAATGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGT
65 TGGAA-GAGATTAAAATAAAGGATATTATCACTCTGAAGTTACAGTAGAGTAGATCGCAACAAGT
* * * * *
39485251 CTTATCTCCTTGAGATTGCAGTGGAATAGACCTAGGAATTCCAGAT
129 CTTACCTCCTTGAGATTACAGTGGAATAGACCGAAGAATTCCAGAA
* * * *
39485297 CTTATCTCTCTAAGA-AATAGTGGAGCTA-ATCGAAA-ATGGTGAATCTTATCTCCCTGAGATTA
1 CTTATCTCCCTAAGATAATAGCGGAGC-AGAT-GAAAGATAGT-AATCCTAT-TCCCTGAGATTA
39485359 GAACGAAGCA
Statistics
Matches: 200, Mismatches: 30, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
174 16 0.08
175 182 0.91
176 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (174 bp):
CTTATCTCCCTAAGATAATAGCGGAGCAGATGAAAGATAGTAATCCTATTCCCTGAGATTACAGT
GGAAGAGATTAAAATAAAGGATATTATCACTCTGAAGTTACAGTAGAGTAGATCGCAACAAGTCT
TACCTCCTTGAGATTACAGTGGAATAGACCGAAGAATTCCAGAA
Found at i:39486178 original size:175 final size:175
Alignment explanation
Indices: 39485996--39486412 Score: 568
Period size: 175 Copynumber: 2.4 Consensus size: 175
39485986 AAAATGGTGA
* *
39485996 ATCTTATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCCAGTAACCCTATTTTCCTAAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCCAGTAACCCTATCTCCCTAAGATTAC
* * *
39486061 AGTGGAACGGATGAAAATAAAGAATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACGAATGAAAATAAAGAATCTTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* * *
39486126 TCTTATCTCCCTGAGATTATAGTGGAATAGACCGAGGAATTTCAG
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
** * *
39486171 ATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCCAGTAACCCTATCTCCCTAAGATTAC
* * * *
39486236 AGTGGAGCGAATTAAAATAAAGGATCTTACCTCTCTGAAGTTATAGTAGAGTAGATCGCATCAGG
66 AGTGGAACGAATGAAAATAAAGAATCTTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* *
39486301 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAATAGTTCCAG
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
* * * * * * * *
39486346 ATCTTGTCTCCCTGAGCA--ATAGTGGAGCAGATTGAAGACAGTGAATCTTATCTCCATAAGATT
1 ATCTTATCTCCCTGAG-ATTACAGCGGAGCAAATTGAAGCCAGT-AACCCTATCTCCCTAAGATT
39486409 ACAG
64 ACAG
39486413 CGGAGCAGAT
Statistics
Matches: 214, Mismatches: 26, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
174 19 0.09
175 194 0.91
176 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (175 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCCAGTAACCCTATCTCCCTAAGATTAC
AGTGGAACGAATGAAAATAAAGAATCTTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
Found at i:39486237 original size:219 final size:219
Alignment explanation
Indices: 39485122--39486183 Score: 1545
Period size: 219 Copynumber: 4.8 Consensus size: 219
39485112 AATTTTAGAA
* * * *
39485122 CTTATCTCCCTGAGATTATAGCGGAGCAGGTTAAAGCTAGTAATCCTATTACCCTGAGATTACAG
1 CTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTGAGATTACAG
* * * *
39485187 TGGAATGGATTAAAGTAAATGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
66 TGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
* * * * *
39485252 TTATCTCCTTGAGATTGCAGTGGAATAGACCTAGGAATTCCAGATCTTATCTCTCTAAGAAATAG
131 TTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGAAATAG
39485317 TGGAGCTAATCGAAAATGGTGAAT
196 TGGAGCTAATCGAAAATGGTGAAT
* * * *
39485341 CTTATCTCCCTGAGATTAGAACGAAGCAGATTGAAGCTAGCAATCCTATTTCCCTGAGATTACAG
1 CTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTGAGATTACAG
* * *
39485406 TGGAATGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTATAGTAGAGTAGATCGCATCAGGTC
66 TGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
* * * *
39485471 TTACCCCCCAGAGATTAC-GCTGGAATAGACCTAAGAATTCCAGATCTTATCTCCCTAAGAAATA
131 TTATCTCCCTGAGATTACAG-TGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGAAATA
39485535 GTGGAGCTAATCGAAAATGGTGAAT
195 GTGGAGCTAATCGAAAATGGTGAAT
** * * * * *
39485560 CTTATCTTTCTAAGATTACGGCAGAGCAGATTGAAGCCAGTAATCCTATTTCCTTGAGATTACAG
1 CTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTGAGATTACAG
*
39485625 TGGAACGGATTAAAATAAAGGATCTTATCGCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
66 TGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
* * * * * *
39485690 TTATCTCCCTAAGATTATAGTAGAATACACCGAAGAATTCCAGATCTTATCTCCATAAGCAATAG
131 TTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGAAATAG
39485755 TGGAGCTAATCGAAAATGGTGAAT
196 TGGAGCTAATCGAAAATGGTGAAT
** *
39485779 CTTATCTCATTGAGATTATAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCCT-AGATTACA
1 CTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTT-CCCTGAGATTACA
* *
39485843 GTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTATAGTAGAGTAGATTGCATCTA-G
65 GTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC-AGG
* * * * *
39485907 TCTTATCTGCTTGAGATTACAGTGGAATAGACCGAAGAATTCCATATCATATCTCCCGAAGAAAT
129 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGAAAT
39485972 AGTGGAGCTAATCGAAAATGGTGAAT
194 AGTGGAGCTAATCGAAAATGGTGAAT
* * * * *
39485998 CTTATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCCAGTAACCCTATTTTCCTAAGATTACAG
1 CTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTGAGATTACAG
* * *
39486063 TGGAACGGATGAAAATAAAGAATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGGTC
66 TGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
* * *
39486128 TTATCTCCCTGAGATTATAGTGGAATAGACCGAGGAATTTCAGATCTTATCTCCCT
131 TTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCT
39486184 GAGATTACAG
Statistics
Matches: 750, Mismatches: 87, Indels: 12
0.88 0.10 0.01
Matches are distributed among these distances:
218 5 0.01
219 740 0.99
220 5 0.01
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (219 bp):
CTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTGAGATTACAG
TGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
TTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGAAATAG
TGGAGCTAATCGAAAATGGTGAAT
Done.