Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 127 of 240
Found at i:39486318 original size:85 final size:85
Alignment explanation
Indices: 39486054--39486327 Score: 248
Period size: 85 Copynumber: 3.2 Consensus size: 85
39486044 TATTTTCCTA
* * *
39486054 AGATTACAGTGGAACGGATGAAAATAAAGAATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCG
1 AGATTACAGTGGAACGAATGAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
39486119 CATCAGGTCTTATCTCCCTG
66 CATCAGGTCTTATCTCCCTG
* * ** * ** * **
39486139 AGATTATAGTGGAATAGACCGAGGAATTTCA-GATCTTATCTCCCTG-AGATTACAGCGGAGCT-
1 AGATTACAGTGGAA-CGAATGA--AAATAAAGGATCTTATCTCTCTGAAG-TTACAGTAGAG-TA
* * * * * *
39486201 GATTGAAGCTAGTAATCCTATCTCCCTA
61 GATCGCATC-AG--GTCTTATCTCCCTG
* * * *
39486229 AGATTACAGTGGAGCGAATTAAAATAAAGGATCTTACCTCTCTGAAGTTATAGTAGAGTAGATCG
1 AGATTACAGTGGAACGAATGAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
39486294 CATCAGGTCTTATCTCCCTG
66 CATCAGGTCTTATCTCCCTG
39486314 AGATTACAGTGGAA
1 AGATTACAGTGGAA
39486328 TAGACCGAAT
Statistics
Matches: 138, Mismatches: 40, Indels: 22
0.69 0.20 0.11
Matches are distributed among these distances:
85 37 0.27
86 5 0.04
87 34 0.25
88 34 0.25
89 5 0.04
90 23 0.17
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (85 bp):
AGATTACAGTGGAACGAATGAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
CATCAGGTCTTATCTCCCTG
Found at i:39486400 original size:44 final size:43
Alignment explanation
Indices: 39486352--39486536 Score: 201
Period size: 44 Copynumber: 4.2 Consensus size: 43
39486342 CCAGATCTTG
* * * *
39486352 TCTCCCTGAGCA-ATAGTGGAGCAGATTGAAGACAGTGAATCTTA
1 TCTCCCTGAG-ATACAGCGGAGCAGATTGAAGCCAGT-AATCCTA
* * *
39486396 TCTCCATAAGATTACAGCGGAGCAGATTGATGCCAGTAATCCTA
1 TCTCCCTGAGA-TACAGCGGAGCAGATTGAAGCCAGTAATCCTA
* *
39486440 TCTCCCTGAGATTACAGCGGAGCAGATTGAACCCAATAATCCTA
1 TCTCCCTGAGA-TACAGCGGAGCAGATTGAAGCCAGTAATCCTA
* * *
39486484 TCTCCCTGAGATTACAGCGGAGAAAATTGAAGCAAGTAATCCTA
1 TCTCCCTGAGA-TACAGCGGAGCAGATTGAAGCCAGTAATCCTA
*
39486528 TTTCCCTGA
1 TCTCCCTGA
39486537 TATTATAGTG
Statistics
Matches: 121, Mismatches: 18, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
43 1 0.01
44 100 0.83
45 20 0.17
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (43 bp):
TCTCCCTGAGATACAGCGGAGCAGATTGAAGCCAGTAATCCTA
Found at i:39486485 original size:263 final size:263
Alignment explanation
Indices: 39486175--39487256 Score: 1021
Period size: 263 Copynumber: 4.1 Consensus size: 263
39486165 TTTCAGATCT
* * * *
39486175 TATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTACAGTG
1 TATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
* *
39486240 GAGCGAATTAAAATAAAGGATCTTACCTCTCTGAAGTTATAGTAGAGTAGATCGCATCAGGTCTT
66 GAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
* *
39486305 ATCTCCCTGAGATTACAGTGGAATAGACCGAATAGTTCCAGATCTTGTCTCCCTGAGCAATAGTG
131 ATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCTGAGCAATAGTG
* * * *
39486370 GAGCAGATTGAAGACAGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGATGCCAGTAA
196 GAGCAAATCGAAGATAGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAA
39486435 TCC
261 TCC
* * * *
39486438 TATCTCCCTGAGATTACAGCGGAGCAGATTGAACCCAATAATCCTATCTCCCTGAGATTACAGCG
1 TATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
** * ** * * * * * * * *
39486503 GAGAAAATT-GAAGCAAGTAATCCTATTTCCCTGATA-TTATAGTGGAGTAGAT-GAAAATAAAG
66 GAGCGAATTAAAATAAAG-GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCG--CAT-CAG
* * * * * * * * *
39486565 AATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATCG--CA--T-CAGGTCTTATCTCCATGAG-
126 -GTCTTATCTCCCTGAGA-TTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCTGAGC
* * ** * * * * * * *
39486623 ATTACAGCGGAATAAA-CTGAATA-AATCTAGATCTTATATCCCTAAGCA--ATAGTGGAGCTA-
189 A--ATAGTGGAGCAAATC-GAAGATAGT-GA-ATCTTATCTCCATAAG-ATTACAGCGGAGC-AG
** ****
39486683 ATAAAAAATGGTGAAT-C
247 ATTGAAGCCAGT-AATCC
* * * *
39486700 TGATCTCCCTGAGATTTTAACAGAGCAGATT-AATGCTAGTAATCCTAT-TACCCTGAGATTACA
1 T-ATCTCCCTGAGATTATAGCGGAGCAGATTGAA-GCCAGTAATCCTATCT-CCCTGAGATTACA
* * *
39486763 GTGGAACGGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGT
63 GTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGT
* * * * *
39486828 CTTATTTCCCTGAGATTACTGTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAGCAATA
128 CTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCTGAGCAATA
* * *
39486893 GTGGAGCAGATCGAAGATGGTGAATCTTATCTCCAAAAGATTACAGCGGAGCAGATTGAAGCCAG
193 GTGGAGCAAATCGAAGATAGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAG
39486958 TAATCC
258 TAATCC
* * * * *
39486964 TATCTCCCCGAGATTATAGCGGAGCAAATTGAAGCCAGTAATCCTATTTGCCTGAGATTACAGTA
1 TATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
* * * *
39487029 GAGCGGATGAAAATAAAGGATTTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
66 GAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
* * ** * *
39487094 ATCTCCCTGAGATTATAGTGGAATAGACTGAAGAAATCCAGATCTTATCTACCTAAGCAATAGTG
131 ATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCTGAGCAATAGTG
* * * * * *
39487159 GAGCAAATCAAAAATTGTGAATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAA
196 GAGCAAATCGAAGATAGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAA
39487224 TCC
261 TCC
* * * *
39487227 TATTTCCCTTAGATTATAGTGGAACAGATT
1 TATCTCCCTGAGATTATAGCGGAGCAGATT
39487257 AAAATAAAGG
Statistics
Matches: 640, Mismatches: 143, Indels: 72
0.75 0.17 0.08
Matches are distributed among these distances:
260 24 0.04
261 22 0.03
262 43 0.07
263 459 0.72
264 44 0.07
265 21 0.03
266 27 0.04
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (263 bp):
TATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
GAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
ATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCTGAGCAATAGTG
GAGCAAATCGAAGATAGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAA
TCC
Found at i:39486496 original size:88 final size:89
Alignment explanation
Indices: 39486369--39486541 Score: 231
Period size: 88 Copynumber: 2.0 Consensus size: 89
39486359 GAGCAATAGT
* * * * * * *
39486369 GGAGCAGATTGAAGACAGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGATGCCAGTA
1 GGAGCAGATTGAACACAATGAATCCTATCTCCATAAGATTACAGCGGAGAAAATTGAAGCAAGTA
39486434 ATCCTATCTCCCTGAGATTACAGC
66 ATCCTATCTCCCTGAGATTACAGC
* * *
39486458 GGAGCAGATTGAACCCAAT-AATCCTATCTCCCTGAGATTACAGCGGAGAAAATTGAAGCAAGTA
1 GGAGCAGATTGAACACAATGAATCCTATCTCCATAAGATTACAGCGGAGAAAATTGAAGCAAGTA
* *
39486522 ATCCTATTTCCCTGATATTA
66 ATCCTATCTCCCTGAGATTA
39486542 TAGTGGAGTA
Statistics
Matches: 72, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
88 56 0.78
89 16 0.22
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.25
Consensus pattern (89 bp):
GGAGCAGATTGAACACAATGAATCCTATCTCCATAAGATTACAGCGGAGAAAATTGAAGCAAGTA
ATCCTATCTCCCTGAGATTACAGC
Found at i:39486574 original size:88 final size:88
Alignment explanation
Indices: 39486369--39486575 Score: 227
Period size: 88 Copynumber: 2.3 Consensus size: 88
39486359 GAGCAATAGT
** * * * *
39486369 GGAGCAGATTGAAGACAGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGATGCCAGTA
1 GGAGCAGATTGAA-ACAAAGAATCTTATCTCCATAAGATTACAGCGGAGAAAATTGAAGCAAGTA
39486434 ATCCTATCTCCCTGAGATTACAGC
65 ATCCTATCTCCCTGAGATTACAGC
* * * * * *
39486458 GGAGCAGATTGAACCCAATAATCCTATCTCCCTGAGATTACAGCGGAGAAAATTGAAGCAAGTAA
1 GGAGCAGATTGAAACAAAGAATCTTATCTCCATAAGATTACAGCGGAGAAAATTGAAGCAAGTAA
* * * *
39486523 TCCTATTTCCCTGATATTATAGT
66 TCCTATCTCCCTGAGATTACAGC
* *
39486546 GGAGTAGA-TGAAAATAAAGAATCTTATCTC
1 GGAGCAGATTG-AAACAAAGAATCTTATCTC
39486576 TCTAAAGTTA
Statistics
Matches: 95, Mismatches: 22, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
87 2 0.02
88 80 0.84
89 13 0.14
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.26
Consensus pattern (88 bp):
GGAGCAGATTGAAACAAAGAATCTTATCTCCATAAGATTACAGCGGAGAAAATTGAAGCAAGTAA
TCCTATCTCCCTGAGATTACAGC
Found at i:39486729 original size:307 final size:307
Alignment explanation
Indices: 39486175--39486763 Score: 788
Period size: 307 Copynumber: 1.9 Consensus size: 307
39486165 TTTCAGATCT
*** *
39486175 TATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGAAAATTGAAGCAAGTAATCCTATCTCCCTAAGATTACAGTG
* * * * *
39486240 GAGCGAATTAAAATAAAGGATCTTACCTCTCTGAAGTTATAGTAGAGTAGATCGCATCAGGTCTT
66 GAGAGAATGAAAATAAAGAATCTTACCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
* * * ** * * *
39486305 ATCTCCCTGAGATTACAGTGGAATAGACCGAATAGTTCCAGATCTTGTCTCCCTGAGCAATAGTG
131 ATCTCCATGAGATTACAGCGGAATAAACCGAATAAATCCAGATCTTATATCCCTAAGCAATAGTG
** * * * * *
39486370 GAGCAGATTGAAGACAGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGATGCCAGTAA
196 GAGCAGATAAAAAACAGTGAATCTGATCTCCATAAGATTACAACAGAGCAGATTAATGCCAGTAA
39486435 TCCTATCT-CCCTGAGATTACAGCGGAGCAGATTGAACCCAATAATCC
261 TCCTAT-TACCCTGAGATTACAGCGGAGCAGATTGAACCCAATAATCC
* * * *
39486482 TATCTCCCTGAGATTACAGCGGAGAAAATTGAAGCAAGTAATCCTATTTCCCTGATATTATAGTG
1 TATCTCCCTGAGATTACAGCGGAGAAAATTGAAGCAAGTAATCCTATCTCCCTAAGATTACAGTG
*
39486547 GAGTAG-ATGAAAATAAAGAATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCT
66 GAG-AGAATGAAAATAAAGAATCTTACCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCT
* *
39486611 TATCTCCATGAGATTACAGCGGAATAAACTGAATAAATCTAGATCTTATATCCCTAAGCAATAGT
130 TATCTCCATGAGATTACAGCGGAATAAACCGAATAAATCCAGATCTTATATCCCTAAGCAATAGT
** * * ** *
39486676 GGAGCTA-ATAAAAAATGGTGAATCTGATCTCCCTGAGATTTTAACAGAGCAGATTAATGCTAGT
195 GGAGC-AGATAAAAAACAGTGAATCTGATCTCCATAAGATTACAACAGAGCAGATTAATGCCAGT
39486740 AATCCTATTACCCTGAGATTACAG
259 AATCCTATTACCCTGAGATTACAG
39486764 TGGAACGGAT
Statistics
Matches: 241, Mismatches: 38, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
306 1 0.00
307 238 0.99
308 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (307 bp):
TATCTCCCTGAGATTACAGCGGAGAAAATTGAAGCAAGTAATCCTATCTCCCTAAGATTACAGTG
GAGAGAATGAAAATAAAGAATCTTACCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
ATCTCCATGAGATTACAGCGGAATAAACCGAATAAATCCAGATCTTATATCCCTAAGCAATAGTG
GAGCAGATAAAAAACAGTGAATCTGATCTCCATAAGATTACAACAGAGCAGATTAATGCCAGTAA
TCCTATTACCCTGAGATTACAGCGGAGCAGATTGAACCCAATAATCC
Found at i:39486926 original size:482 final size:482
Alignment explanation
Indices: 39486433--39487464 Score: 1503
Period size: 482 Copynumber: 2.1 Consensus size: 482
39486423 TGATGCCAGT
* * *
39486433 AATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGAACCCAATAATCCTATCTCCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTA
* * * *
39486498 CAGCGGAGAAAATTGAAGCAAGTAATCCTATTTCCCTGATATTATAGTGGAGTAGATGAAAATAA
66 CAGCGGAGAAAATTGAAGCAAGTAATCCTATTTCCCTGAGATTACAGTAGAGCAGATGAAAATAA
39486563 AGAATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGATTAC
131 AGAATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGATTAC
* * * *
39486628 AGCGGAATAAACTGAATAAATCTAGATCTTATATCCCTAAGCAATAGTGGAGCTAATAAAAAATG
196 AGCGGAATAAACTGAAGAAATCCAGATCTTATATACCTAAGCAATAGTGGAGCAAATAAAAAATG
** *
39486693 GTGAATCTGATCTCCCTGAGATTTTAACAGAGCAGATT-AATGCTAGTAATCCTATTACCCTGAG
261 GTGAATCTGATCTCCCTGAGATTACAACAGAGCAGATTGAA-GCCAGTAATCCTATTACCCTGAG
*
39486757 ATTACAGTGGAACGGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCA
325 ATTACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCA
* ** * * * * *
39486822 TCAGGTCTTATTTCCCTGAGATTACTGTGGAATAGGCCGAAGAGTTCCAGATCTTGTCT-TCCTG
390 TCAGGTCTAAACTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCT-CTA
*
39486886 AGCAATAGTGGAGC-AGATCGAAGATGGTG
454 AGCAATAGTGGAGCTA-ATCGAAAATGGTG
*** *
39486915 AATCTTATCTCCAAAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCCGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTA
* * * * *
39486980 TAGCGGAGCAAATTGAAGCCAGTAATCCTATTTGCCTGAGATTACAGTAGAGCGGATGAAAATAA
66 CAGCGGAGAAAATTGAAGCAAGTAATCCTATTTCCCTGAGATTACAGTAGAGCAGATGAAAATAA
* * * *
39487045 AGGATTTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTAT
131 AGAATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGATTAC
* * * * *
39487110 AGTGGAATAGACTGAAGAAATCCAGATCTTATCTACCTAAGCAATAGTGGAGCAAATCAAAAATT
196 AGCGGAATAAACTGAAGAAATCCAGATCTTATATACCTAAGCAATAGTGGAGCAAATAAAAAATG
** * * * *
39487175 GTGAATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTTAGA
261 GTGAATCTGATCTCCCTGAGATTACAACAGAGCAGATTGAAGCCAGTAATCCTATTACCCTGAGA
* * * *
39487240 TTATAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAATTTACAGTAGAGTAGATTGCAT
326 TTACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
*
39487305 CAGGTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCTCTAAG
391 CAGGTCTAAACTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCTCTAAG
39487370 CAATAGTGGAGCTAATCGAAAATGGTG
456 CAATAGTGGAGCTAATCGAAAATGGTG
** * *
39487397 AATCTTATCTCCCTGAGATTACAGTAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTA
39487462 CAG
66 CAG
39487465 TGGAACGGAT
Statistics
Matches: 485, Mismatches: 62, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
482 481 0.99
483 4 0.01
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.28
Consensus pattern (482 bp):
AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTA
CAGCGGAGAAAATTGAAGCAAGTAATCCTATTTCCCTGAGATTACAGTAGAGCAGATGAAAATAA
AGAATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAGATTAC
AGCGGAATAAACTGAAGAAATCCAGATCTTATATACCTAAGCAATAGTGGAGCAAATAAAAAATG
GTGAATCTGATCTCCCTGAGATTACAACAGAGCAGATTGAAGCCAGTAATCCTATTACCCTGAGA
TTACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
CAGGTCTAAACTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCTCTAAG
CAATAGTGGAGCTAATCGAAAATGGTG
Found at i:39486947 original size:219 final size:218
Alignment explanation
Indices: 39486492--39486979 Score: 557
Period size: 219 Copynumber: 2.2 Consensus size: 218
39486482 TATCTCCCTG
* * * * **
39486492 AGATTACAGCGGAGAAAATTGAAGCAAGTAATCCTATTTCCCTGATATTATAGTGGAGTAGATGA
1 AGATTACAGCGGAGCAGATTGAAGCAAGTAATCCTA-TTCCCTGAGATTACAGTGGAACAGATGA
*
39486557 AAATAAAGAATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGA
65 AAATAAAGAATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGA
* * *
39486622 GATTACAGCGGAATAAACTGAATAAATCTAGATCTTATATCCCTAAGCAATAGTGGAGCTAATAA
130 GATTACAGCGGAATAAACCGAAGAAATCCAGATCTTATATCCCTAAGCAATAGTGGAGCTAATAA
***
39486687 AAAATGGTGAATCTGATCTCCCTG
195 AAAATGGTGAATCTGATCTCCAAA
** * * * * *
39486711 AGATTTTAACAGAGCAGATT-AATGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATT
1 AGATTACAGCGGAGCAGATTGAA-GCAAGTAATCCTATT-CCCTGAGATTACAGTGGAACAGATG
* * * *
39486775 AAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATTTCCCTG
64 AAAATAAAGAATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATG
* * ** ** * * * *
39486840 AGATTACTGTGGAATAGGCCGAAGAGTTCCAGATCTTGTCTTCCTGAGCAATAGTGGAGC-AGAT
129 AGATTACAGCGGAATAAACCGAAGAAATCCAGATCTTATATCCCTAAGCAATAGTGGAGCTA-AT
** * *
39486904 CGAAGATGGTGAATCTTATCTCCAAA
193 AAAAAATGGTGAATCTGATCTCCAAA
* *
39486930 AGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCCGAGATTA
1 AGATTACAGCGGAGCAGATTGAAGCAAGTAATCCTAT-TCCCTGAGATTA
39486980 TAGCGGAGCA
Statistics
Matches: 220, Mismatches: 44, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
218 5 0.02
219 212 0.96
220 3 0.01
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.28
Consensus pattern (218 bp):
AGATTACAGCGGAGCAGATTGAAGCAAGTAATCCTATTCCCTGAGATTACAGTGGAACAGATGAA
AATAAAGAATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCATGAG
ATTACAGCGGAATAAACCGAAGAAATCCAGATCTTATATCCCTAAGCAATAGTGGAGCTAATAAA
AAATGGTGAATCTGATCTCCAAA
Found at i:39486978 original size:44 final size:44
Alignment explanation
Indices: 39486930--39487026 Score: 149
Period size: 44 Copynumber: 2.2 Consensus size: 44
39486920 TATCTCCAAA
*
39486930 AGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCCG
1 AGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCCG
* * * *
39486974 AGATTATAGCGGAGCAAATTGAAGCCAGTAATCCTATTTGCCTG
1 AGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCCG
39487018 AGATTACAG
1 AGATTACAG
39487027 TAGAGCGGAT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.24
Consensus pattern (44 bp):
AGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCCG
Found at i:39487230 original size:219 final size:219
Alignment explanation
Indices: 39486959--39487582 Score: 953
Period size: 219 Copynumber: 2.8 Consensus size: 219
39486949 TGAAGCCAGT
* * * * *
39486959 AATCCTATCTCCCCGAGATTATAGCGGAGCAAATTGAAGCCAGTAATCCTATTTGCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* * * *
39487024 CAGTAGAGCGGATGAAAATAAAGGATTTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
* *
39487089 GTCTTATCTCCCTGAGATTATAGTGGAATAGACTGAAGAAATCCAGATCTTATCTAC-CTAAGCA
131 GTCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAGAATTCCAGATCTTATCT-CTCTAAGCA
*
39487153 ATAGTGGAGCAAATCAAAAATTGTG
195 ATAGTGGAGCAAATCAAAAATGGTG
* *
39487178 AATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTTAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* * * * *
39487243 TAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAATTTACAGTAGAGTAGATTGCATCAG
66 CAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
* * **
39487308 GTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCTCTAAGCAA
131 GTCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCTCTAAGCAA
* *
39487373 TAGTGGAGCTAATCGAAAATGGTG
196 TAGTGGAGCAAATCAAAAATGGTG
** *
39487397 AATCTTATCTCCCTGAGATTACAGTAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* *
39487462 CAGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
*
39487527 GTCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAGAATTTCAGATCTTATCTC
131 GTCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAGAATTCCAGATCTTATCTC
39487583 CCTGAGATTA
Statistics
Matches: 363, Mismatches: 41, Indels: 2
0.89 0.10 0.00
Matches are distributed among these distances:
218 1 0.00
219 362 1.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.29
Consensus pattern (219 bp):
AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
CAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
GTCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCTCTAAGCAA
TAGTGGAGCAAATCAAAAATGGTG
Found at i:39487609 original size:175 final size:175
Alignment explanation
Indices: 39487398--39487763 Score: 561
Period size: 175 Copynumber: 2.1 Consensus size: 175
39487388 AAAATGGTGA
* * *
39487398 ATCTTATCTCCCTGAGATTACAGTAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATCTCCCTAAGATTAC
* * * * *
39487463 AGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACGAATTAAAATAAAGGACCTTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* * *
39487528 TCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAGAATTTCAG
131 TCTTATCTCCCTCAGATTACAGTGGAATAGACCGAAGAATTCCAG
* * * *
39487573 ATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATCTCCCTAAGATTAC
*
39487638 AGTGGAGCGAATTAAAATAAAGGACCTTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACGAATTAAAATAAAGGACCTTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* *
39487703 TCTTATCTCCCTCAGATTACAGTGGAATAGACCGAATAGTTCCAG
131 TCTTATCTCCCTCAGATTACAGTGGAATAGACCGAAGAATTCCAG
*
39487748 ATCTTGTCTCCCTGAG
1 ATCTTATCTCCCTGAG
39487764 CAATAGTGGA
Statistics
Matches: 172, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
175 172 1.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (175 bp):
ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGCAATCCTATCTCCCTAAGATTAC
AGTGGAACGAATTAAAATAAAGGACCTTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTCAGATTACAGTGGAATAGACCGAAGAATTCCAG
Found at i:39487720 original size:85 final size:85
Alignment explanation
Indices: 39487450--39487729 Score: 260
Period size: 85 Copynumber: 3.2 Consensus size: 85
39487440 CAATCCTATT
* * *
39487450 TCCCTGAGATTACAGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGT
1 TCCCTGAGATTACAGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGT
39487515 AGATCGCATCAGGTCTTATC
66 AGATCGCATCAGGTCTTATC
* * *** ** * **
39487535 TCCCTGAGATTATAGTGGAATAGACCGAAGAATTTCA-GATCTTATCTCCCTG-AGATTACAGCG
1 TCCCTGAGATTACAGTGGAA-CGAATTAA-AA-TAAAGGATCTTATCTCTCTGAAG-TTACAGTA
* * * * *
39487598 GAGCT-GATTGAAGCTAGTAATCCTATC
62 GAG-TAGATCGCATC-AG--GTCTTATC
* * * *
39487625 TCCCTAAGATTACAGTGGAGCGAATTAAAATAAAGGACCTTACCTCTCTGAAGTTACAGTAGAGT
1 TCCCTGAGATTACAGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGT
39487690 AGATCGCATCAGGTCTTATC
66 AGATCGCATCAGGTCTTATC
*
39487710 TCCCTCAGATTACAGTGGAA
1 TCCCTGAGATTACAGTGGAA
39487730 TAGACCGAAT
Statistics
Matches: 145, Mismatches: 39, Indels: 22
0.70 0.19 0.11
Matches are distributed among these distances:
85 43 0.30
86 4 0.03
87 35 0.24
88 34 0.23
89 6 0.04
90 23 0.16
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (85 bp):
TCCCTGAGATTACAGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGT
AGATCGCATCAGGTCTTATC
Found at i:39487748 original size:394 final size:394
Alignment explanation
Indices: 39487179--39489158 Score: 1544
Period size: 394 Copynumber: 5.0 Consensus size: 394
39487169 AAAATTGTGA
* * * *
39487179 ATCTTCTCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTTAGATTAT
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTAC
* * * *
39487244 AGTGGAAC-AGATTAAAATAAAGGATCTTATCTCTCTGAATTTACAGTAGAGTAGATTGCATCAG
66 AGTGGAGCGA-ATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
* * * *
39487308 GTCTAAACTCCCTGAGATTCCAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCTCTAAGCAA
130 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAA
39487373 TAGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAGATTACAGTAGAGCAGATTGAAGCC
195 TAGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAGATTACAGTAGAGCAGATTGAAGCC
*
39487438 AGCAATCCTATTTCCCTGAGATTACAGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAAG
260 AGCAATCCTATTTCCCTGAGATTACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTTAAG
* *
39487503 TTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAGAAT
325 TTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACTGAAGAAT
39487568 TTCAG
390 TTCAG
* * *
39487573 ATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTAC
* * *
39487638 AGTGGAGCGAATTAAAATAAAGGACCTTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGG
* * * * *
39487703 TCTTATCTCCCTCAGATTACAGTGGAATAGACCGAATAGTTCCAGATCTTGTCTCCCTGAGCAAT
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAAT
* * * * **
39487768 AGTGGAGC-AGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCC
196 AGTGGAGCTA-ATCGAAAATGGTGAATCTTATCTCCCTGAGATTACAGTAGAGCAGATTGAAGCC
* * * * * ** *** * * * * *
39487832 AGTAATCCTATCTCCCTGAGATTATAGCGGAGCAAATT-AAACCCAGTAAACCTATCTC-CCTGA
260 AGCAATCCTATTTCCCTGAGATTACAGTGGAACGGATTAAAATAAAG-GATCTTATCTCTCTTAA
** * * * * * * * *** * **
39487895 GATTACAGCGGAGAAAATTGAAGCCAGTAATCCTAT-TTGTTGATATTACAGTGGAGCAGA-TGA
324 G-TTACAGTAGAGTAGATCGCA-TCAG--GTCTTATCTCCCTGAGATTACAGTGGAATAGACTGA
**
39487958 A-AA-TAAACG
385 AGAATTTCA-G
* * ** * * * * * *
39487967 ATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATCGCA-TCAG--GTCTTATCTCCCTGAGATTA
1 ATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTA
** * ** * *
39488028 CAGTGGAATAGACTGAA-T-AAATCCA-GATCTTATCTCCCT-AAGCAATAGTGGAGCTA-ATAA
65 CAGTGG---AG-C-GAATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAG-TAGAT--
*** * * * ** ** * * *
39488088 AAAAT-GGTGAATCTGATCTCCCTGAGATT--A-T--AACAGAGTAGATTAATGCTAGTAATCCT
122 CGCATCAG-G--TCTTATCTCCCTGAGATTACAGTGGAATAGA-CCGAAGAATTCCAG--ATCTT
* * * * ** * *** * * *
39488147 AT-TACCCTGAG-ATTACAGTTGAACGGAT-TAAAATAAAGGATATTATCTCTCTGA-AGTTACA
181 ATCT-CCCTAAGCA--ATAGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAGA-TTACA
* * * * * * * * * *** ** * *
39488208 GTAGAGTAAATCGCA-TCAG--GTCTTATCTCCCTGAGATTACTGTGGAATAAACCGAAGAGTTT
242 GTAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTACAGTGGAACGGA-TTAA-A-ATA
* * * * ** * * * * ***
39488270 CA-GATCTTGTCT-TCCTGAGCAATAGTGGAGCAGATCGACGA-CGGTGAATCTTATCTCCAAAA
304 AAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCG-C-ATCAG-G--TCTTATCTCCCTGA
* ** * * * *
39488332 GATTACAGCGGAGCAAATTGAAGCCA-GT-A-
364 GATTACAGTGGAATAGACTGAAG-AATTTCAG
* * * * *
39488361 ATCCTATCTCCCTGAGATTACAGCGGAGCAAATTAAAGCCAGTAATCCTATTTGCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTAC
* * *
39488426 AGTGGAGCGGATGAAAATAAAGGATCTTATCCCTCTAAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGG
* *
39488491 TCTTATCTCCCTGAGATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAAT
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAAT
* * * * *
39488556 AGTGGAGCTAATCGAAAATTGTGAATCTTCTCTCCTTGAGATTACAG-CGAAGCAGATTGAAGCT
196 AGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAGATTACAGTAG-AGCAGATTGAAGCC
* * *
39488620 AGTAATCCTATTTCTCTGAGATTACAGTGG-ACGAGATTAAAATAAAGGATCTTATCTCTCTGAA
260 AGCAATCCTATTTCCCTGAGATTACAGTGGAACG-GATTAAAATAAAGGATCTTATCTCTCTTAA
* * *
39488684 GTTACAGTAGAGTAGATCGCATCAAGTCTTATCTTCCTGAGATTACAGTGGAATAGACTGAAAAA
324 GTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACTGAAGAA
39488749 TTTCAG
389 TTTCAG
* * * * *
39488755 AGCTTATCTTCCTGAGATTATAGCGGAGCAGATTAAAGCTAGTAATCCTAT-TACCCTGAGATTA
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCT-CCCTGAGATTA
* * *
39488819 CAGTGGAACGGATTAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
65 CAGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
* * * * * * *
39488884 GTCTTATTTCCCTGAGATTACAGTGGAATAGACCTAGGAATTCCAGGTCTAATCTCTCTAAGAAA
130 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAA
* * * *
39488949 TAGTGGAGCTAATCGAAAACGGTGAATCTTATCTCCCTGAGATTTCAAT-GAAGCAGATTTAAGC
195 TAGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAGATTACAGTAG-AGCAGATTGAAGC
* * *
39489013 CAGCAATCCTATTTCCTTGAGATTACAGTGGAACGAATTAAAATAAAAGATCTTATCTCT-TTGA
259 CAGCAATCCTATTTCCCTGAGATTACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTT-A
* * * * *
39489077 AGTTACGGTAGAGTAGATCACATCAGGTCTTA-CTTCCCAGATATTAC-GCTGGAATAGACCGAA
323 AGTTACAGTAGAGTAGATCGCATCAGGTCTTATC-TCCCTGAGATTACAG-TGGAATAGACTGAA
*
39489140 TAATTTCAG
386 GAATTTCAG
39489149 ATCTTATCTC
1 ATCTTATCTC
39489159 TCTAAGAAAT
Statistics
Matches: 1209, Mismatches: 300, Indels: 154
0.73 0.18 0.09
Matches are distributed among these distances:
391 54 0.04
392 80 0.07
393 70 0.06
394 809 0.67
395 65 0.05
396 76 0.06
397 55 0.05
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (394 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTAC
AGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAAT
AGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAGATTACAGTAGAGCAGATTGAAGCCA
GCAATCCTATTTCCCTGAGATTACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTTAAGT
TACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACTGAAGAATT
TCAG
Found at i:39487802 original size:175 final size:174
Alignment explanation
Indices: 39487398--39487820 Score: 544
Period size: 175 Copynumber: 2.4 Consensus size: 174
39487388 AAAATGGTGA
** * * * * *
39487398 ATCTTATCTCCCTGAGATTACAGTAGAGCAGATTGAAGCCAGCAATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGA-TACAGCGGAGCAGATCGAAGCTAGTAATCCTATCTCCCTAAGATTAC
* * * * * *
39487463 AGTGGAACGGATTAGAATAAAGGATCTTATCTCTCTTAAGTTACAGTAGAGTAGATCGCATCAGG
65 AGTGGAGCGAATTAAAATAAAGGACCTTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* * *
39487528 TCTTATCTCCCTGAGATTATAGTGGAATAGACCGAAGAATTTCAG
130 TCTTATCTCCCTCAGATTACAGTGGAATAGACCGAAGAATTCCAG
* *
39487573 ATCTTATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTAC
1 ATCTTATCTCCCTGAGA-TACAGCGGAGCAGATCGAAGCTAGTAATCCTATCTCCCTAAGATTAC
39487638 AGTGGAGCGAATTAAAATAAAGGACCTTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
65 AGTGGAGCGAATTAAAATAAAGGACCTTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* *
39487703 TCTTATCTCCCTCAGATTACAGTGGAATAGACCGAATAGTTCCAG
130 TCTTATCTCCCTCAGATTACAGTGGAATAGACCGAAGAATTCCAG
* * * * * *
39487748 ATCTTGTCTCCCTGAGCA-ATAGTGGAGCAGATCGAAGAC-GGTGAATCTTATCTCCATAAGATT
1 ATCTTATCTCCCTGAG-ATACAGCGGAGCAGATCGAAG-CTAGT-AATCCTATCTCCCTAAGATT
*
39487811 ACAGCGGAGC
63 ACAGTGGAGC
39487821 AGATTGAAGC
Statistics
Matches: 218, Mismatches: 27, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
174 17 0.08
175 200 0.92
176 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (174 bp):
ATCTTATCTCCCTGAGATACAGCGGAGCAGATCGAAGCTAGTAATCCTATCTCCCTAAGATTACA
GTGGAGCGAATTAAAATAAAGGACCTTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGT
CTTATCTCCCTCAGATTACAGTGGAATAGACCGAAGAATTCCAG
Found at i:39487844 original size:44 final size:44
Alignment explanation
Indices: 39487791--39487930 Score: 199
Period size: 44 Copynumber: 3.2 Consensus size: 44
39487781 GAAGACGGTG
* * * *
39487791 AATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGT
1 AATCCTATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCCAGT
* * *
39487835 AATCCTATCTCCCTGAGATTATAGCGGAGCAAATTAAACCCAGT
1 AATCCTATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCCAGT
* *
39487879 AAACCTATCTCCCTGAGATTACAGCGGAGAAAATTGAAGCCAGT
1 AATCCTATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCCAGT
39487923 AATCCTAT
1 AATCCTAT
39487931 TTGTTGATAT
Statistics
Matches: 83, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 83 1.00
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (44 bp):
AATCCTATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCCAGT
Found at i:39487900 original size:263 final size:263
Alignment explanation
Indices: 39487577--39488646 Score: 985
Period size: 263 Copynumber: 4.1 Consensus size: 263
39487567 TTTCAGATCT
** * * *
39487577 TATCTCCCTGAGATTACAGCGGAGCTGATTGAAGCTAGTAATCCTATCTCCCTAAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAAATTAAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
39487642 GAGCGAATTAAAATAAAGGACCTTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
66 GAGCGAATTAAAATAAAGGACCTTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
* * *
39487707 ATCTCCCTCAGATTACAGTGGAATAGACCGAATAGTTCCAGATCTTGTCTCCCTGAGCAATAGTG
131 ATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCTGAGCAATAGTG
39487772 GAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAA
196 GAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAA
39487837 TCC
261 TCC
* * * *
39487840 TATCTCCCTGAGATTATAGCGGAGCAAATTAAACCCAGTAAACCTATCTCCCTGAGATTACAGCG
1 TATCTCCCTGAGATTACAGCGGAGCAAATTAAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
** * *** * ** * * * * *
39487905 GAGAAAATT-GAAGCCAGTAATCC-TATTTGT-TGATA-TTACAGTGGAGCAGAT-GAAAATAAA
66 GAGCGAATTAAAATAAAG-GA-CCTTACCTCTCTGA-AGTTACAGTAGAGTAGATCG--CAT-CA
* * * * * * * *
39487965 CGATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATCG--CA--T-CAGGTCTTATCTCCCTGAG
125 -GGTCTTATCTCCCTGAGA-TTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCTGAG
* ** * ** * * * *
39488024 -ATTACAGTGGAATAGA-CTGAATA-AATCCAGATCTTATCTCCCTAAGCA--ATAGTGGAGCTA
188 CA--ATAGTGGAGCAGATC-GAAGACGGT-GA-ATCTTATCTCCATAAG-ATTACAGCGGAGC-A
** ****
39488084 -ATAAAAAATGGTGAAT-C
246 GATTGAAGCCAGT-AATCC
* * * * * * *
39488101 TGATCTCCCTGAGATTATAACAGAGTAGATTAATGCTAGTAATCCTAT-TACCCTGAGATTACAG
1 T-ATCTCCCTGAGATTACAGCGGAGCAAATTAAAGCCAGTAATCCTATCT-CCCTGAGATTACAG
* * * ** * *
39488165 TTGAACGGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAAATCGCATCAGGTC
64 TGGAGCGAATTAAAATAAAGGACCTTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
* * * * *
39488230 TTATCTCCCTGAGATTACTGTGGAATAAACCGAAGAGTTTCAGATCTTGTCTTCCTGAGCAATAG
129 TTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCTGAGCAATAG
* * *
39488295 TGGAGCAGATCGACGACGGTGAATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGT
194 TGGAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGT
39488360 AATCC
259 AATCC
* *
39488365 TATCTCCCTGAGATTACAGCGGAGCAAATTAAAGCCAGTAATCCTATTTGCCTGAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAAATTAAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
* * * *
39488430 GAGCGGATGAAAATAAAGGATCTTATCC-CTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCT
66 GAGCGAATTAAAATAAAGGACCTTA-CCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCT
* ** *
39488494 TATCTCCCTGAGATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGT
130 TATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCTGAGCAATAGT
* ** * * * * *
39488559 GGAGCTA-ATCGAAAATTGTGAATCTTCTCTCCTTGAGATTACAGCGAAGCAGATTGAAGCTAGT
195 GGAGC-AGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGT
39488623 AATCC
259 AATCC
* *
39488628 TATTTCTCTGAGATTACAG
1 TATCTCCCTGAGATTACAG
39488647 TGGACGAGAT
Statistics
Matches: 625, Mismatches: 143, Indels: 78
0.74 0.17 0.09
Matches are distributed among these distances:
259 1 0.00
260 44 0.07
261 37 0.06
262 108 0.17
263 349 0.56
264 40 0.06
265 45 0.07
266 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (263 bp):
TATCTCCCTGAGATTACAGCGGAGCAAATTAAAGCCAGTAATCCTATCTCCCTGAGATTACAGTG
GAGCGAATTAAAATAAAGGACCTTACCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
ATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTTCCAGATCTTATCTCCCTGAGCAATAGTG
GAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAA
TCC
Found at i:39488209 original size:219 final size:218
Alignment explanation
Indices: 39487884--39489599 Score: 1377
Period size: 219 Copynumber: 7.8 Consensus size: 218
39487874 CCAGTAAACC
* * * * ** *
39487884 TATCTCCCTGAGATTACAGCGGAGAAAATTGAAGCCAGTAATCCTATTT-GTTGATATTACAGTG
1 TATCTCCCTGAGATTATAGCGGAGCAGATT-AAGCTAGTAATCCTATTTCCCTGAGATTACAGTG
* * * * *
39487948 GAGCAGATGAAAATAAACGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
65 GAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
* * *
39488013 ATCTCCCTGAGATTACAGTGGAATAGACTGAATAAATCCAGATCTTATCTCCCTAAGCAATAGTG
130 ATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTG
*
39488078 GAGCTAATAAAAAATGGTGAATCT
195 GAGCTAATCAAAAATGGTGAATCT
* * * * * *
39488102 GATCTCCCTGAGATTATAACAGAGTAGATTAATGCTAGTAATCCTATTACCCTGAGATTACAGTT
1 TATCTCCCTGAGATTATAGCGGAGCAGATTAA-GCTAGTAATCCTATTTCCCTGAGATTACAGTG
* *
39488167 GAACGGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAAATCGCATCAGGTCTT
65 GAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
* * * * * * *
39488232 ATCTCCCTGAGATTACTGTGGAATAAACCGAAGAGTTTCAGATCTTGTCTTCCTGAGCAATAGTG
130 ATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTG
* ** *
39488297 GAGC-AGATCGACGACGGTGAATCT
195 GAGCTA-ATCAAAAATGGTGAATCT
*** * * * * *
39488321 TATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCG
1 TATCTCCCTGAGATTATAGCGGAGCAGATT-AAGCTAGTAATCCTATTTCCCTGAGATTACAGTG
* * *** * * * ** * *
39488386 GAGCAAATT-AAAGCCAGTA-ATCCTATTTGC-CTG-AGATTACAGTGGAGCGGAT-GAAAATAA
65 GAACAGATTAAAATAAAGGATAT--TATCT-CTCTGAAG-TTACAGTAGAGTAGATCG--CAT-C
* * * * * * *
39488446 AGGATCTTATC-CCTCT-AAAGTTACAGTAGAGTAGATC---GCA-T-CAGGTCTTATCTCCCTG
123 AGG-TCTTATCTCC-CTGAGA-TTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTA
* * * ***
39488504 AG-ATTACAGTGGA-ATAGACTGAAGAAATCCAG-ATCT
185 AGCA--ATAGTGGAGCTA-A-TCAA-AAATGGTGAATCT
* * * ** * * * * *
39488540 TATCTCCCTAAGCA--ATAGTGGAGCTA-ATCGAAAATTGTGAATCTTCTCTCCTTGAGATTACA
1 TATCTCCCTGAG-ATTATAGCGGAGC-AGAT-TAAGCTAGT-AATCCTATTTCCCTGAGATTACA
* ** * * * ***
39488602 G-CGAAGCAGATTGAAGCT--AGTA-ATCCTATTTCTCTG-AGATTACAGTGGACG-AGATTAAA
62 GTGGAA-CAGATT-AAAATAAAGGATAT--TATCTCTCTGAAG-TTACAGTAGA-GTAGA-TCGC
* * * * * * * *
39488661 ATAAAGGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATC---GCA-TCAAG-TCTTATCTTC
120 AT-CAGG-TCTTATCTCCCTGAGA-TTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCC
* * * * * * *
39488720 CTGAG-ATTACAGTGGA-ATAGACTGAAAAAT-TTCAGAGCT
182 CTAAGCA--ATAGTGGAGCTA-A-TCAAAAATGGTGA-ATCT
* *
39488759 TATCTTCCTGAGATTATAGCGGAGCAGATTAAAGCTAGTAATCCTATTACCCTGAGATTACAGTG
1 TATCTCCCTGAGATTATAGCGGAGCAGATT-AAGCTAGTAATCCTATTTCCCTGAGATTACAGTG
* *
39488824 GAACGGATTAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
65 GAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
* * * * * * *
39488889 ATTTCCCTGAGATTACAGTGGAATAGACCTAGGAATTCCAGGTCTAATCTCTCTAAGAAATAGTG
130 ATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTG
* *
39488954 GAGCTAATCGAAAACGGTGAATCT
195 GAGCTAATCAAAAATGGTGAATCT
** * * * *
39488978 TATCTCCCTGAGATT-TCAATGAAGCAGATTTAAGCCAGCAATCCTATTTCCTTGAGATTACAGT
1 TATCTCCCTGAGATTAT-AGCGGAGCAGA-TTAAGCTAGTAATCCTATTTCCCTGAGATTACAGT
* * * * *
39489042 GGAAC-GAATTAAAATAAAAGATCTTATCTCTTTGAAGTTACGGTAGAGTAGATCACATCAGGTC
64 GGAACAG-ATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
* * * * * *
39489106 TTA-CTTCCCAGATATTAC-GCTGGAATAGACCGAATAATTTCAGATCTTATCTCTCTAAGAAAT
128 TTATC-TCCCTGAGATTACAG-TGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAAT
*
39489169 AGTGGAGCTAATCAAAAATGGTAAATCT
191 AGTGGAGCTAATCAAAAATGGTGAATCT
* * * * * *
39489197 TATCTCCCTAAGATTATGGTGGAGCAGATTGAAGCCAATAATTCTATTTCCCTGAGATTACAGTG
1 TATCTCCCTGAGATTATAGCGGAGCAGATT-AAGCTAGTAATCCTATTTCCCTGAGATTACAGTG
* * *
39489262 GAACGGATTAAAATAAAGGATCTTATCGCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
65 GAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
39489327 ATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTG
130 ATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTG
39489392 GAGCTAATCAAAAATGGTGAATCT
195 GAGCTAATCAAAAATGGTGAATCT
** * *
39489416 TATCTCATTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTTAGATTACAGTG
1 TATCTCCCTGAGATTATAGCGGAGCAGATT-AAGCTAGTAATCCTATTTCCCTGAGATTACAGTG
* *
39489481 GAACAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATTGCATCAGGTCTT
65 GAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
* * * *
39489546 ATCTTCCTGATATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATGTCCCT
130 ATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCT
39489600 GAGATTACAG
Statistics
Matches: 1218, Mismatches: 216, Indels: 127
0.78 0.14 0.08
Matches are distributed among these distances:
216 27 0.02
217 24 0.02
218 93 0.08
219 971 0.80
220 58 0.05
221 23 0.02
222 22 0.02
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (218 bp):
TATCTCCCTGAGATTATAGCGGAGCAGATTAAGCTAGTAATCCTATTTCCCTGAGATTACAGTGG
AACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTA
TCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAATAGTGG
AGCTAATCAAAAATGGTGAATCT
Found at i:39488370 original size:44 final size:44
Alignment explanation
Indices: 39488316--39488411 Score: 147
Period size: 44 Copynumber: 2.2 Consensus size: 44
39488306 GACGACGGTG
* *
39488316 AATCTTATCTCCAAAAGATTACAGCGGAGCAAATTGAAGCCAGT
1 AATCCTATCTCCAAAAGATTACAGCGGAGCAAATTAAAGCCAGT
***
39488360 AATCCTATCTCCCTGAGATTACAGCGGAGCAAATTAAAGCCAGT
1 AATCCTATCTCCAAAAGATTACAGCGGAGCAAATTAAAGCCAGT
39488404 AATCCTAT
1 AATCCTAT
39488412 TTGCCTGAGA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (44 bp):
AATCCTATCTCCAAAAGATTACAGCGGAGCAAATTAAAGCCAGT
Found at i:39488419 original size:44 final size:44
Alignment explanation
Indices: 39488331--39488433 Score: 170
Period size: 44 Copynumber: 2.3 Consensus size: 44
39488321 TATCTCCAAA
*
39488331 AGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTG
1 AGATTACAGCGGAGCAAATTAAAGCCAGTAATCCTATCTCCCTG
* *
39488375 AGATTACAGCGGAGCAAATTAAAGCCAGTAATCCTATTTGCCTG
1 AGATTACAGCGGAGCAAATTAAAGCCAGTAATCCTATCTCCCTG
*
39488419 AGATTACAGTGGAGC
1 AGATTACAGCGGAGC
39488434 GGATGAAAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.23
Consensus pattern (44 bp):
AGATTACAGCGGAGCAAATTAAAGCCAGTAATCCTATCTCCCTG
Found at i:39488526 original size:482 final size:481
Alignment explanation
Indices: 39487850--39488787 Score: 1470
Period size: 482 Copynumber: 1.9 Consensus size: 481
39487840 TATCTCCCTG
* *
39487850 AGATTATAGCGGAGCAAATTAAACCCAGTAAACCTATCTCCCTGAGATTACAGCGGAGAAAATTG
1 AGATTACAGCGGAGCAAATTAAACCCAGTAAACCTATCTCCCTGAGATTACAGCGGAGAAAATTA
* * *
39487915 AAGCCAGTAATCCTATTTGTTGATATTACAGTGGAGCAGATGAAAATAAACGATCTTATCTCTCT
66 AAGCCAGTAATCCTATTTGCTGAGATTACAGTGGAGCAGATGAAAATAAACGATCTTATCCCTCT
39487980 AAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACTGAA
131 AAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACTGAA
*
39488045 TAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAATGGTGAATCTGATCTCCC
196 GAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAATGGTGAATCTGATCTCCC
* *
39488110 TGAGATTATAAC-AGAGTAGATT-AATGCTAGTAATCCTATTACCCTGAGATTACAGTTGAACG-
261 TGAGATTACAACGA-AGCAGATTGAA-GCTAGTAATCCTATTACCCTGAGATTACAG-TGAACGA
*
39488172 GATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAAATCGCATCAGGTCTTATCTC
323 GATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAAATCGCATCAAGTCTTATCTC
* * * * * *
39488237 CCTGAGATTACTGTGGAATAAACCGAAGAGTTTCAGATCTTGTCTTCCTGAGCA-ATAGTGGAGC
388 CCTGAGATTACAGTGGAATAAACCGAAAAATTTCAGAGCTTATCTTCCTGAG-ATATAGCGGAGC
39488301 AGATCGACGACGGTGAATCTTATCTCCAAA
452 AGATCGACGACGGTGAATCTTATCTCCAAA
* * * *
39488331 AGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCGGAGCAAATTA
1 AGATTACAGCGGAGCAAATTAAACCCAGTAAACCTATCTCCCTGAGATTACAGCGGAGAAAATTA
* *
39488396 AAGCCAGTAATCCTATTTGCCTGAGATTACAGTGGAGCGGATGAAAATAAAGGATCTTATCCCTC
66 AAGCCAGTAATCCTATTTG-CTGAGATTACAGTGGAGCAGATGAAAATAAACGATCTTATCCCTC
39488461 TAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACTGA
130 TAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACTGA
** * **
39488526 AGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATCGAAAATTGTGAATCTTCTCTCC
195 AGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAATGGTGAATCTGATCTCC
* * * * *
39488591 TTGAGATTACAGCGAAGCAGATTGAAGCTAGTAATCCTATTTCTCTGAGATTACAGTGGACGAGA
260 CTGAGATTACAACGAAGCAGATTGAAGCTAGTAATCCTATTACCCTGAGATTACAGTGAACGAGA
* * *
39488656 TTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATCTTCC
325 TTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAAATCGCATCAAGTCTTATCTCCC
* *
39488721 TGAGATTACAGTGGAATAGACTGAAAAATTTCAGAGCTTATCTTCCTGAGATTATAGCGGAGCAG
390 TGAGATTACAGTGGAATAAACCGAAAAATTTCAGAGCTTATCTTCCTGAGA-TATAGCGGAGCAG
39488786 AT
454 AT
39488788 TAAAGCTAGT
Statistics
Matches: 415, Mismatches: 36, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
481 84 0.20
482 315 0.76
483 16 0.04
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (481 bp):
AGATTACAGCGGAGCAAATTAAACCCAGTAAACCTATCTCCCTGAGATTACAGCGGAGAAAATTA
AAGCCAGTAATCCTATTTGCTGAGATTACAGTGGAGCAGATGAAAATAAACGATCTTATCCCTCT
AAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACTGAA
GAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAATGGTGAATCTGATCTCCC
TGAGATTACAACGAAGCAGATTGAAGCTAGTAATCCTATTACCCTGAGATTACAGTGAACGAGAT
TAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAAATCGCATCAAGTCTTATCTCCCT
GAGATTACAGTGGAATAAACCGAAAAATTTCAGAGCTTATCTTCCTGAGATATAGCGGAGCAGAT
CGACGACGGTGAATCTTATCTCCAAA
Found at i:39488735 original size:85 final size:84
Alignment explanation
Indices: 39488628--39488910 Score: 245
Period size: 85 Copynumber: 3.3 Consensus size: 84
39488618 CTAGTAATCC
39488628 TATTTCTCTGAGATTACAGTGGACGAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTA
1 TATTTC-CTGAGATTACAGTGGACGAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTA
39488693 GAGTAGATCGCATCAAGTCT
65 GAGTAGATCGCATCAAGTCT
** * ** *
39488713 TATCTTCCTGAGATTACAGTGGAATAGACTGAAAAATTTCA-GAGCTTATCT-TCCTG-AGATTA
1 TAT-TTCCTGAGATTACAGTGGACGAGA-T-TAAAA-TAAAGGATCTTATCTCT-CTGAAG-TTA
* ** * * *
39488775 TAGCGGAGCAGATTAAAGCTAGT-AA-TCC
60 CAGTAGAGTAGA-T--CGC-A-TCAAGTCT
* * *
39488803 TATTACCCTGAGATTACAGTGGAACG-GATTAAAATAAAGGATATTATCTCTCTAAAGTTACAGT
1 TATT-TCCTGAGATTACAGTGG-ACGAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGT
*
39488867 AGAGTAGATCGCATCAGGTCT
64 AGAGTAGATCGCATCAAGTCT
39488888 TATTTCCCTGAGATTACAGTGGA
1 TATTT-CCTGAGATTACAGTGGA
39488911 ATAGACCTAG
Statistics
Matches: 150, Mismatches: 29, Indels: 39
0.69 0.13 0.18
Matches are distributed among these distances:
83 1 0.01
84 3 0.02
85 46 0.31
86 7 0.05
87 30 0.20
88 28 0.19
89 5 0.03
90 25 0.17
91 4 0.03
92 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (84 bp):
TATTTCCTGAGATTACAGTGGACGAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAG
AGTAGATCGCATCAAGTCT
Found at i:39488773 original size:175 final size:175
Alignment explanation
Indices: 39488592--39488916 Score: 546
Period size: 175 Copynumber: 1.9 Consensus size: 175
39488582 CTTCTCTCCT
* * *
39488592 TGAGATTACAGCGAAGCAGATTGAAGCTAGTAATCCTATTTCTCTGAGATTACAGTGG-ACGAGA
1 TGAGATTACAGCGAAGCAGATTAAAGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACG-GA
* *
39488656 TTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATCTT-C
65 TTAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAAGTCTTAT-TTCC
39488720 CTGAGATTACAGTGGAATAGACTGAAAAATTTCAGAGCTTATCTTCC
129 CTGAGATTACAGTGGAATAGACTGAAAAATTTCAGAGCTTATCTTCC
* *
39488767 TGAGATTATAGCGGAGCAGATTAAAGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGAT
1 TGAGATTACAGCGAAGCAGATTAAAGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGAT
*
39488832 TAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATTTCCCT
66 TAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATTTCCCT
39488897 GAGATTACAGTGGAATAGAC
131 GAGATTACAGTGGAATAGAC
39488917 CTAGGAATTC
Statistics
Matches: 140, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
174 2 0.01
175 135 0.96
176 3 0.02
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.30
Consensus pattern (175 bp):
TGAGATTACAGCGAAGCAGATTAAAGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACGGAT
TAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATTTCCCT
GAGATTACAGTGGAATAGACTGAAAAATTTCAGAGCTTATCTTCC
Found at i:39488992 original size:175 final size:175
Alignment explanation
Indices: 39488601--39488957 Score: 467
Period size: 175 Copynumber: 2.0 Consensus size: 175
39488591 TTGAGATTAC
* * * *
39488601 AGCGAAGCAGATTG-AAGCTAGTAATCCTATTTCTCTGAGATTACAGTGGACGAGATTAAAATAA
1 AGCGGAGCAGA-TGAAAACTAGTAATCCTATTACCCTGAGATTACAGTGGACGAGATTAAAATAA
* *
39488665 AGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATCTTCCTGAGATTAC
65 AGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATCTTCCTGAGATTAC
* * * *
39488730 AGTGGAATAGACTGAAAAATTTCAGAGCTTATCTTCCTGAGATTAT
130 AGTGGAATAGACTGAAAAATTCCAGAGCTAATCTTCCTAAGATAAT
* *
39488776 AGCGGAGCAGATTAAAGCTAGTAATCCTATTACCCTGAGATTACAGTGGAACG-GATTAAAATAA
1 AGCGGAGCAGATGAAAACTAGTAATCCTATTACCCTGAGATTACAGTGG-ACGAGATTAAAATAA
*
39488840 AGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTAT-TTCCCTGAGATTA
65 AGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATCTT-CCTGAGATTA
**
39488904 CAGTGGAATAGACCT-AGGAATTCCAG-GTCTAATC-TCTCTAAGA-AAT
129 CAGTGGAATAGA-CTGAAAAATTCCAGAG-CTAATCTTC-CTAAGATAAT
*
39488950 AGTGGAGC
1 AGCGGAGC
39488958 TAATCGAAAA
Statistics
Matches: 162, Mismatches: 14, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
174 15 0.09
175 142 0.88
176 5 0.03
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.29
Consensus pattern (175 bp):
AGCGGAGCAGATGAAAACTAGTAATCCTATTACCCTGAGATTACAGTGGACGAGATTAAAATAAA
GGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAAGTCTTATCTTCCTGAGATTACA
GTGGAATAGACTGAAAAATTCCAGAGCTAATCTTCCTAAGATAAT
Found at i:39489550 original size:832 final size:833
Alignment explanation
Indices: 39488360--39490061 Score: 2605
Period size: 832 Copynumber: 2.0 Consensus size: 833
39488350 TGAAGCCAGT
* * *
39488360 AATCCTATCTCCCTGAGATTACAGCGGAGCAAATTAAAGCCAGTAATCCTATTTGCCTGAGATTA
1 AATCCTATCTCCCTAAGATTACAGCGGAGCAAATTAAAGCCAATAATCCTATTTCCCTGAGATTA
*
39488425 CAGTGGAGCGGATGAAAATAAAGGATCTTATCCCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGGAACGGATGAAAATAAAGGATCTTATCCCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
*
39488490 GTCTTATCTCCCTGAGATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAA
131 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAAATCCAGATCTTATCTCCCTAAGCAA
* * * *
39488555 TAGTGGAGCTAATCGAAAATTGTGAATCTTCTCTCCTTGAGATTACAGCGAAGCAGATTGAAGCT
196 TAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCATTGAGATTACAGCGAAGCAGATTGAAGCT
*
39488620 AGTAATCCTATTTCTCTGAGATTACAGTGGACGAGATTAAAATAAAGGATCTTATCTCTCTGAAG
261 AGTAATCCTATTTCCCTGAGATTACAGTGGACGAGATTAAAATAAAGGATCTTATCTCTCTGAAG
*
39488685 TTACAGTAGAGTAGATCGCATCAAGTCTTATCTTCCTGAGATTACAGTGGAATAGACTGAAAAAT
326 TTACAGTAGAGTAGATCGCATCAAGTCTTATCTTCCTGAGATTACAGTGGAATAGACCGAAAAAT
* *
39488750 TTCAGAGCTTATCTTCCTGAGATTATAGCGGAGCAGATTAAAGCTAGTAATCCTATTACCCTGAG
391 TTCAGAGCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATTACCCTGAG
*
39488815 ATTACAGTGGAACGGATTAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCA
456 ACTACAGTGGAACGGATTAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCA
* * * * *
39488880 TC-AGGTCTTATTTCCCTGAGATTACAGTGGAATAGACCTAGGAATTCCAGGTC-TAATCTCTCT
521 TCTA-GTCTTATCTCCCTAAGATTACAGTGGAATAGACCGAAGAATTCCAGATCAT-ATCTC-CT
* *
39488943 -AAGAAATAGTGGAGCTAATCGAAAACGGTGAATCTTATCTCCCTGAGATTTCAATGAAGCAGAT
583 GAAGAAATAGTGGAGCTAATCGAAAACGGTGAATCTTATCTCCCTGAGATTACAATGAAGCAAAT
* * * *
39489007 TTAAGCCAGCAATCCTATTTCCTTGAGATTACAGTGGAACGAATTAAAATAAA-AGATCTTATCT
648 TGAAACCAGCAATCCTATTTCCCTGAGATTACAGTGGAACGAATAAAAATAAAGA-ATCTTATCT
* * * * *
39489071 CTTTGAAGTTACGGTAGAGTAGATCACATCAGGTCTTA-CTTCCCAGATATTA-CGCTGGAATAG
712 CTCTGAAGTTACAGTAGAGTAGATCACATCAGGTCTTATC-ACCCAGAGATTATAG-TGGAATAG
* * *
39489134 ACCGAATAATTTCAGATCTTATCTCTCTAAGA-AATAGTGGAGCTAATCAAAAATGGTA
775 ACCGAAGAATTTCAGATCTTATCTCCCTAAGATAATAGCGGAGCTAATCAAAAATGGTA
* ** * * * *
39489192 AATCTTATCTCCCTAAGATTATGGTGGAGCAGATTGAAGCCAATAATTCTATTTCCCTGAGATTA
1 AATCCTATCTCCCTAAGATTACAGCGGAGCAAATTAAAGCCAATAATCCTATTTCCCTGAGATTA
* * *
39489257 CAGTGGAACGGATTAAAATAAAGGATCTTATCGCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGGAACGGATGAAAATAAAGGATCTTATCCCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
*
39489322 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAA
131 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAAATCCAGATCTTATCTCCCTAAGCAA
*
39489387 TAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCATTGAGATTACAGCGGAGCAGATTGAAGCT
196 TAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCATTGAGATTACAGCGAAGCAGATTGAAGCT
*
39489452 AGTAATCCTATTTCCCTTAGATTACAGTGGAAC-AGATTAAAATAAAGGATCTTATCTCTCTGAA
261 AGTAATCCTATTTCCCTGAGATTACAGTGG-ACGAGATTAAAATAAAGGATCTTATCTCTCTGAA
* * * *
39489516 GTTACAGTAGAGTAGATTGCATCAGGTCTTATCTTCCTGATATTACAGTGGAATAGACCGAAGAA
325 GTTACAGTAGAGTAGATCGCATCAAGTCTTATCTTCCTGAGATTACAGTGGAATAGACCGAAAAA
* * * *
39489581 TTTCAGATCTTATGTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTGA
390 TTTCAGAGCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATTACCCTGA
* *
39489646 GACTACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATTGC
455 GACTACAGTGGAACGGATTAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGC
* *
39489711 ATCTAGTCTTATCTGCCTAAGATTACAGTGGAATAGACCGAAGAATTCCATATCATATCTCCTGA
520 ATCTAGTCTTATCTCCCTAAGATTACAGTGGAATAGACCGAAGAATTCCAGATCATATCTCCTGA
* * *
39489776 AGAAATAGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAGATTACAGTGGAGCAAATTG
585 AGAAATAGTGGAGCTAATCGAAAACGGTGAATCTTATCTCCCTGAGATTACAATGAAGCAAATTG
* *
39489841 AAACCAGTAATCCTATTTCCCTGAGATTACAGTGGAACGGATAAAAATAAAGAATCTTATCTCTC
650 AAACCAGCAATCCTATTTCCCTGAGATTACAGTGGAACGAATAAAAATAAAGAATCTTATCTCTC
* *
39489906 TGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCACCCTGAGATTATAGTGGAATAGACCGA
715 TGAAGTTACAGTAGAGTAGATCACATCAGGTCTTATCACCCAGAGATTATAGTGGAATAGACCGA
* * ** **
39489971 AGAATTTCAGATCTTATCTCCCTGAGATTATAGCGGAGCTAAT-TGAAGCGAGT-
780 AGAATTTCAGATCTTATCTCCCTAAGATAATAGCGGAGCTAATCAAAAATG-GTA
* *
39490024 AATCCTATCTCCCTAAGATTACAGTGGAGCGAATTAAA
1 AATCCTATCTCCCTAAGATTACAGCGGAGCAAATTAAA
39490062 ATAAAGGATC
Statistics
Matches: 784, Mismatches: 77, Indels: 18
0.89 0.09 0.02
Matches are distributed among these distances:
831 2 0.00
832 760 0.97
833 22 0.03
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (833 bp):
AATCCTATCTCCCTAAGATTACAGCGGAGCAAATTAAAGCCAATAATCCTATTTCCCTGAGATTA
CAGTGGAACGGATGAAAATAAAGGATCTTATCCCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAAATCCAGATCTTATCTCCCTAAGCAA
TAGTGGAGCTAATCAAAAATGGTGAATCTTATCTCATTGAGATTACAGCGAAGCAGATTGAAGCT
AGTAATCCTATTTCCCTGAGATTACAGTGGACGAGATTAAAATAAAGGATCTTATCTCTCTGAAG
TTACAGTAGAGTAGATCGCATCAAGTCTTATCTTCCTGAGATTACAGTGGAATAGACCGAAAAAT
TTCAGAGCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATTACCCTGAG
ACTACAGTGGAACGGATTAAAATAAAGGATATTATCTCTCTAAAGTTACAGTAGAGTAGATCGCA
TCTAGTCTTATCTCCCTAAGATTACAGTGGAATAGACCGAAGAATTCCAGATCATATCTCCTGAA
GAAATAGTGGAGCTAATCGAAAACGGTGAATCTTATCTCCCTGAGATTACAATGAAGCAAATTGA
AACCAGCAATCCTATTTCCCTGAGATTACAGTGGAACGAATAAAAATAAAGAATCTTATCTCTCT
GAAGTTACAGTAGAGTAGATCACATCAGGTCTTATCACCCAGAGATTATAGTGGAATAGACCGAA
GAATTTCAGATCTTATCTCCCTAAGATAATAGCGGAGCTAATCAAAAATGGTA
Found at i:39489593 original size:175 final size:175
Alignment explanation
Indices: 39489412--39489775 Score: 588
Period size: 175 Copynumber: 2.1 Consensus size: 175
39489402 AAAATGGTGA
* * *
39489412 ATCTTATCTCATTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTTAGATTAC
1 ATCTTATCTCACTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTGAGACTAC
*
39489477 AGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATTGCATC-AG
66 AGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATTGCATCTA-
* * * *
39489541 GTCTTATCTTCCTGATATTACAGTGGAATAGACCGAAGAATTTCAG
130 GTCTTATCTGCCTAAGATTACAGTGGAATAGACCGAAGAATTCCAG
* *
39489587 ATCTTATGTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTGAGACTAC
1 ATCTTATCTCACTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTGAGACTAC
*
39489652 AGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATTGCATCTAG
66 AGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATTGCATCTAG
*
39489717 TCTTATCTGCCTAAGATTACAGTGGAATAGACCGAAGAATTCCAT
131 TCTTATCTGCCTAAGATTACAGTGGAATAGACCGAAGAATTCCAG
*
39489762 ATCATATCTC-CTGA
1 ATCTTATCTCACTGA
39489776 AGAAATAGTG
Statistics
Matches: 174, Mismatches: 14, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
174 4 0.02
175 169 0.97
176 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.30
Consensus pattern (175 bp):
ATCTTATCTCACTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTGAGACTAC
AGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATTGCATCTAG
TCTTATCTGCCTAAGATTACAGTGGAATAGACCGAAGAATTCCAG
Found at i:39489736 original size:394 final size:393
Alignment explanation
Indices: 39489193--39491190 Score: 1656
Period size: 394 Copynumber: 5.0 Consensus size: 393
39489183 AAAATGGTAA
* * * * *
39489193 ATCTTATCTCCCTAAGATTATGGTGGAGCAGATTGAAGCCAATAATTCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTAC
*
39489258 AGTGGAACGGATTAAAATAAAGGATCTTATCGCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
39489323 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAAT
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAAT
* *
39489388 AGTGGAGCTAATCAAAAATGGTGAATCTTATCTCATTGAGATTACAGCGGAGCAGATTGAAGCTA
196 AGTGGAGCTAATCGAAAATGGTGAATCTTATCTCA-TGAGATTACAGTGGAGCAGATTGAAGCTA
*
39489453 GTAATCCTATTTCCCTTAGATTACAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAAGT
260 GTAATCCTATTTCCCTTAGATTACAGTGGAACAGATTAAAATAAAGAATCTTATCTCTCTGAAGT
* ** *
39489518 TACAGTAGAGTAGATTGCATCAGGTCTTATCTTCCTGATATTACAGTGGAATAGACCGAAGAATT
325 TACAGTAGAGTAGATCGCATCAGGTCTTATCACCCTGAGATTACAGTGGAATAGACCGAAGAATT
39489583 TCAG
390 TCAG
* * * *
39489587 ATCTTATGTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTGAGACTAC
1 ATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTAC
* *
39489652 AGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATTGCATCTA-
66 AGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC-AG
* * * * *
39489716 GTCTTATCTGCCTAAGATTACAGTGGAATAGACCGAAGAATTCCATATCATATCT-CCTGAAGAA
130 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCT-AAGCA
* * *
39489780 ATAGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAGATTACAGTGGAGCAAATTGAAAC
194 ATAGTGGAGCTAATCGAAAATGGTGAATCTTATCT-CATGAGATTACAGTGGAGCAGATTGAAGC
* * * *
39489845 CAGTAATCCTATTTCCCTGAGATTACAGTGGAACGGATAAAAATAAAGAATCTTATCTCTCTGAA
258 TAGTAATCCTATTTCCCTTAGATTACAGTGGAACAGATTAAAATAAAGAATCTTATCTCTCTGAA
*
39489910 GTTACAGTAGAGTAGATCGCATCAGGTCTTATCACCCTGAGATTATAGTGGAATAGACCGAAGAA
323 GTTACAGTAGAGTAGATCGCATCAGGTCTTATCACCCTGAGATTACAGTGGAATAGACCGAAGAA
39489975 TTTCAG
388 TTTCAG
* * *
39489981 ATCTTATCTCCCTGAGATTATAGCGGAGCTA-ATTGAAGCGAGTAATCCTATCTCCCTAAGATTA
1 ATCTTATCTCCCTGAGATTATAGCGGAGC-AGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* * * *
39490045 CAGTGGAGCGAATTAAAATAAAGGATCTTATCTTTCTGAAGTTACAGTAGAGTAGATGGCATCAG
65 CAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
* * * *
39490110 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTACCAGATCTTGTCTCCCTGAGCAA
130 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAA
* * *
39490175 TAGTGGAGC-AGATCGAAGATGGTGAATCTTATCTCCATAAGATTACAGTAGAGCAGATTGAAGC
195 TAGTGGAGCTA-ATCGAAAATGGTGAATCTTATCT-CATGAGATTACAGTGGAGCAGATTGAAGC
* * * * * *** * *
39490239 TAGTAATCCTATCT-CTTTAAGATTACAGCGGAGCAGATT-GAAGCCAGTAATCCTATCTCCCTG
258 TAGTAATCCTATTTCCCTT-AGATTACAGTGGAACAGATTAAAATAAAG-AATCTTATCTCTCTG
** * * *** * * * ** *
39490302 -AGATTACAGCGGAGCAAATTAAAGCCAGTAATCCTATTTCCCTGATATTACAGTGGAGCAGATG
321 AAG-TTACAGTAGAGTAGATCGCA-TCAG--GTCTTATCACCCTGAGATTACAGT-G-G-A-AT-
* *** *
39490366 AAAATAAAGGATCTTATCAG
377 AGACCGAA-GA-ATT-TCAG
* * * * * * * * *
39490386 GTCTTATCT-CCTGAGATTATAGTGGAATAGACTGAATAAATCCAG--ATCTTATCTCCCTAAGC
1 ATCTTATCTCCCTGAGATTATAGCGG---AG-CAGATTGAAGCCAGTAATCCTATTTCCCTGAG-
* * * * * * * ** * *
39490448 ATT--AGTGGAGC-TAATAAAA-AATGGTGAATCTGATCTCCCTG-AGATTATAGCGGAGCATAT
61 ATTACAGTGGAACGGATTAAAATAA-AG-G-ATCTTATCTCTCTGAAG-TTACAGTAGAGTAGAT
** * * ** ** **
39490508 -TAATGCTAGTAATCCTAT-TACCCTGAGATTACAGTGGAACGGA-TTAA-AA-TAAAGGATCTT
122 CGCAT-C-AG--GTCTTATCT-CCCTGAGATTACAGTGGAATAGACCGAAGAATTCCA-GATCTT
* ** * * * * * *
39490568 ATCTCTCTGAAGTTACAGTAGAG-TAGATCG-CATTAG-G--TCTTATCTCCCTGAGATTACAGT
181 ATCTCCCT-AAGCAATAGTGGAGCTA-ATCGAAAATGGTGAATCTTATCT-CATGAGATTACAGT
** ** * * * * * * * * * * **
39490628 GGAATAGACAGAAAGTTCCAG--ATCTTGTCTCCCTGAGCA--ATAGTAGAGCAGATCGAAGACG
243 GGAGCAGATTG-AAG--CTAGTAATCCTATTTCCCTTAG-ATTACAGTGGAACAGAT-TAAAATA
** ** * * * * * *
39490689 GTGAATCTTATCT-TCAT-AAGATTACAGCGGAGCAGAAT-GAAGCCAGTAATCCTATCTCCCTG
303 AAGAATCTTATCTCTC-TGAAG-TTACAGTAGAGTAG-ATCGCA-TCAG--GTCTTATCACCCTG
* ** ** * *
39490751 AGATTACAGCGGAGCAGATTGAAG-CTAGT-A-
362 AGATTACAGTGGAATAGACCGAAGAAT-TTCAG
* * * *
39490781 ATCTTATCTCCCTGAGATTACAGCGGAGTAAATTGAAGCCAGTAATCCTATTTCCCTGATATTAC
1 ATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTAC
* * **
39490846 AGTGGAACGGATGAAAATAAAGGAACTTATCTCTCT-ATAGTTACAGTACTGTAGATCGCATCAG
66 AGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATCAG
* * * * **
39490910 GTCTTATCTCCCTGAGATTACAGTGGAATAGACTGAATAAATCCAGATATTATCTCCCTAAAAAA
130 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAA
** * * * * *
39490975 TAGTGGAGCTAATAAAAAATGGTGAATCTGATCTCCCTGAGATTATAGTGGAACAGATTAAAGCT
195 TAGTGGAGCTAATCGAAAATGGTGAATCTTATCT-CATGAGATTACAGTGGAGCAGATTGAAGCT
* * * *
39491040 AGTAATCCTATTACCCTGAGATTACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAG
259 AGTAATCCTATTTCCCTTAGATTACAGTGGAACAGATTAAAATAAAGAATCTTATCTCTCTGAAG
* * * * *
39491105 TTACAGTAGAGTAGATCGCATCAGGTCTTTTCTCCCTGAGATTACTGTGGAATAGATCGAAGAGT
324 TTACAGTAGAGTAGATCGCATCAGGTCTTATCACCCTGAGATTACAGTGGAATAGACCGAAGAAT
*
39491170 TCCAG
389 TTCAG
* *
39491175 ATCTTGTCTCCTTGAG
1 ATCTTATCTCCCTGAG
39491191 CAATAGTGGA
Statistics
Matches: 1268, Mismatches: 257, Indels: 158
0.75 0.15 0.09
Matches are distributed among these distances:
391 26 0.02
392 53 0.04
393 44 0.03
394 685 0.54
395 70 0.06
396 65 0.05
397 23 0.02
398 1 0.00
399 2 0.00
400 6 0.00
401 2 0.00
402 5 0.00
403 5 0.00
404 64 0.05
405 93 0.07
406 47 0.04
407 25 0.02
408 26 0.02
409 26 0.02
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (393 bp):
ATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTAC
AGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCTAAGCAAT
AGTGGAGCTAATCGAAAATGGTGAATCTTATCTCATGAGATTACAGTGGAGCAGATTGAAGCTAG
TAATCCTATTTCCCTTAGATTACAGTGGAACAGATTAAAATAAAGAATCTTATCTCTCTGAAGTT
ACAGTAGAGTAGATCGCATCAGGTCTTATCACCCTGAGATTACAGTGGAATAGACCGAAGAATTT
CAG
Found at i:39489820 original size:175 final size:175
Alignment explanation
Indices: 39489424--39489832 Score: 538
Period size: 175 Copynumber: 2.3 Consensus size: 175
39489414 CTTATCTCAT
* * ** *
39489424 TGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTTAGATTACAGTGGAACAGAT
1 TGAGATAACAGCGGAGCAGATCGAAAATAGTAATCCTATTTCCCTGAGATTACAGTGGAACAGAT
* *
39489489 TAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATTGCATCAGGTCTTATCTTCCT
66 TAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATTGCATCAGGTCTTATCTGCCT
* * * * *
39489554 GATATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATGTCCC
131 AAGATTACAGTGGAATAGACCGAAGAATTCCAGATCATATCTCCC
* * ** * *
39489599 TGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTGAGACTACAGTGGAACGGAT
1 TGAGATAACAGCGGAGCAGATCGAAAATAGTAATCCTATTTCCCTGAGATTACAGTGGAACAGAT
39489664 TAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATTGCATCTA-GTCTTATCTGCC
66 TAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATTGCATC-AGGTCTTATCTGCC
*
39489728 TAAGATTACAGTGGAATAGACCGAAGAATTCCATATCATATCT-CC
130 TAAGATTACAGTGGAATAGACCGAAGAATTCCAGATCATATCTCCC
* * * * *
39489773 TGAAGA-AATAGTGGAGCTA-ATCGAAAATGGTGAATCTTATCTCCCTGAGATTACAGTGGA
1 TG-AGATAACAGCGGAGC-AGATCGAAAATAGT-AATCCTATTTCCCTGAGATTACAGTGGA
39489833 GCAAATTGAA
Statistics
Matches: 209, Mismatches: 21, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
174 20 0.10
175 188 0.90
176 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (175 bp):
TGAGATAACAGCGGAGCAGATCGAAAATAGTAATCCTATTTCCCTGAGATTACAGTGGAACAGAT
TAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATTGCATCAGGTCTTATCTGCCT
AAGATTACAGTGGAATAGACCGAAGAATTCCAGATCATATCTCCC
Found at i:39489831 original size:45 final size:44
Alignment explanation
Indices: 39489782--39490369 Score: 127
Period size: 44 Copynumber: 13.4 Consensus size: 44
39489772 CTGAAGAAAT
* ** *
39489782 AGTGGAGCTAATCGAAAATGGTGAATCTTATCTCCCTGAGATTAC
1 AGTGGAGCAAATCGAAAACAGT-AATCCTATCTCCCTGAGATTAC
* * *
39489827 AGTGGAGCAAATTGAAACCAGTAATCCTATTTCCCTGAGATTAC
1 AGTGGAGCAAATCGAAAACAGTAATCCTATCTCCCTGAGATTAC
* ** ** * * *
39489871 AGTGGAACGGATAAAAATAAAG-AATCTTATCTCTCTGA-AGTTAC
1 AGTGGAGCAAATCGAAA-ACAGTAATCCTATCTCCCTGAGA-TTAC
* * * * * * * * *
39489915 AGTAGAGTAGATCG-CATCAG--GTCTTATCACCCTGAGATTAT
1 AGTGGAGCAAATCGAAAACAGTAATCCTATCTCCCTGAGATTAC
** * * * *
39489956 AGTGGAATAGACCGAAGAATTTCAG--ATCTTATCTCCCTGAGATTAT
1 AGTGGAGCAAATCGAA-AA---CAGTAATCCTATCTCCCTGAGATTAC
* * * * *
39490002 AGCGGAGCTAATTG-AAGCGAGTAATCCTATCTCCCTAAGATTAC
1 AGTGGAGCAAATCGAAAAC-AGTAATCCTATCTCCCTGAGATTAC
* ** * * * **
39490046 AGTGGAGCGAATTAAAATAAAG-GATCTTATCTTTCTGA-AGTTAC
1 AGTGGAGCAAATCGAAA-ACAGTAATCCTATCTCCCTGAGA-TTAC
* * * ** * * *
39490090 AGTAGAGTAGAT-GGCATCAG--GTCTTATCTCCCTGAGATTAC
1 AGTGGAGCAAATCGAAAACAGTAATCCTATCTCCCTGAGATTAC
** * * * * *
39490131 AGTGGAATAGACCGAAGAGTACCAG--ATCTTGTCTCCCTGAGCA--AT
1 AGTGGAGCAAATCGAA-A--A-CAGTAATCCTATCTCCCTGAG-ATTAC
* * ** * * *
39490176 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCATAAGATTAC
1 AGTGGAGCAAATCGAAAACAGT-AATCCTATCTCCCTGAGATTAC
* * * * ** *
39490221 AGTAGAGCAGATTG-AAGCTAGTAATCCTATCTCTTTAAGATTAC
1 AGTGGAGCAAATCGAAAAC-AGTAATCCTATCTCCCTGAGATTAC
* * * **
39490265 AGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTAC
1 AGTGGAGCAAATCGAAAACAGTAATCCTATCTCCCTGAGATTAC
* * * * *
39490309 AGCGGAGCAAAT-TAAAGCCAGTAATCCTATTTCCCTGATATTAC
1 AGTGGAGCAAATCGAAA-ACAGTAATCCTATCTCCCTGAGATTAC
*
39490353 AGTGGAGCAGAT-GAAAA
1 AGTGGAGCAAATCGAAAA
39490370 TAAAGGATCT
Statistics
Matches: 400, Mismatches: 114, Indels: 60
0.70 0.20 0.10
Matches are distributed among these distances:
41 53 0.13
42 10 0.03
43 9 0.02
44 226 0.56
45 55 0.14
46 46 0.12
47 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27
Consensus pattern (44 bp):
AGTGGAGCAAATCGAAAACAGTAATCCTATCTCCCTGAGATTAC
Found at i:39489866 original size:219 final size:219
Alignment explanation
Indices: 39489587--39490058 Score: 655
Period size: 219 Copynumber: 2.2 Consensus size: 219
39489577 AGAATTTCAG
* * * * *
39489587 ATCTTATGTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTGAGACTAC
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAAATTGAAACCAGTAATCCTATTTCCCTGAGACTAC
* * *
39489652 AGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATTGCATCTA-
66 AGTGGAACGGATAAAAATAAAGAATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATC-AG
** *
39489716 GTCTTATCTGCCTAAGATTACAGTGGAATAGACCGAAGAATTCCATATCATATCT-CCTGAAGA-
130 GTCTTATCACCCTAAGATTACAGTGGAATAGACCGAAGAATTCCAGATCATATCTCCCTG-AGAT
* *
39489779 AATAGTGGAGCTAATCGAAAATG-GTGA
194 AATAGCGGAGCTAATCG-AAACGAGT-A
*
39489806 ATCTTATCTCCCTGAGATTACAGTGGAGCAAATTGAAACCAGTAATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAAATTGAAACCAGTAATCCTATTTCCCTGAGACTAC
*
39489871 AGTGGAACGGATAAAAATAAAGAATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACGGATAAAAATAAAGAATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGG
* * * * *
39489936 TCTTATCACCCTGAGATTATAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTA
131 TCTTATCACCCTAAGATTACAGTGGAATAGACCGAAGAATTCCAGATCATATCTCCCTGAGATAA
* *
39490001 TAGCGGAGCTAATTGAAGCGAGTA
196 TAGCGGAGCTAATCGAAACGAGTA
* * *
39490025 ATCCTATCTCCCTAAGATTACAGTGGAGCGAATT
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAAATT
39490059 AAAATAAAGG
Statistics
Matches: 224, Mismatches: 25, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
218 1 0.00
219 203 0.91
220 20 0.09
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (219 bp):
ATCTTATCTCCCTGAGATTACAGTGGAGCAAATTGAAACCAGTAATCCTATTTCCCTGAGACTAC
AGTGGAACGGATAAAAATAAAGAATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCACCCTAAGATTACAGTGGAATAGACCGAAGAATTCCAGATCATATCTCCCTGAGATAA
TAGCGGAGCTAATCGAAACGAGTA
Found at i:39489987 original size:175 final size:175
Alignment explanation
Indices: 39489806--39490171 Score: 561
Period size: 175 Copynumber: 2.1 Consensus size: 175
39489796 AAAATGGTGA
* * *
39489806 ATCTTATCTCCCTGAGATTACAGTGGAGCAAATTGAAACCAGTAATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAAATTGAAACCAGTAATCCTATCTCCCTAAGATTAC
*
39489871 AGTGGAACGGATAAAAATAAAGAATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACGAATAAAAATAAAGAATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* **
39489936 TCTTATCACCCTGAGATTATAGTGGAATAGACCGAAGAATTTCAG
131 TCTTATCACCCTGAGATTACAGTGGAATAGACCGAAGAATACCAG
* * * *
39489981 ATCTTATCTCCCTGAGATTATAGCGGAGCTAATTGAAGCGAGTAATCCTATCTCCCTAAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAAATTGAAACCAGTAATCCTATCTCCCTAAGATTAC
* * * * *
39490046 AGTGGAGCGAATTAAAATAAAGGATCTTATCTTTCTGAAGTTACAGTAGAGTAGATGGCATCAGG
66 AGTGGAACGAATAAAAATAAAGAATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* *
39490111 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTACCAG
131 TCTTATCACCCTGAGATTACAGTGGAATAGACCGAAGAATACCAG
*
39490156 ATCTTGTCTCCCTGAG
1 ATCTTATCTCCCTGAG
39490172 CAATAGTGGA
Statistics
Matches: 172, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
175 172 1.00
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (175 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGCAAATTGAAACCAGTAATCCTATCTCCCTAAGATTAC
AGTGGAACGAATAAAAATAAAGAATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCACCCTGAGATTACAGTGGAATAGACCGAAGAATACCAG
Found at i:39490133 original size:85 final size:85
Alignment explanation
Indices: 39489858--39490137 Score: 251
Period size: 85 Copynumber: 3.2 Consensus size: 85
39489848 TAATCCTATT
* *
39489858 TCCCTGAGATTACAGTGGAACGGATAAAAATAAAGAATCTTATCTCTCTGAAGTTACAGTAGAGT
1 TCCCTGAGATTACAGTGGAACGAATAAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGT
39489923 AGATCGCATCAGGTCTTATC
66 AGATCGCATCAGGTCTTATC
* * * ** * ** * * **
39489943 ACCCTGAGATTATAGTGGAATAGACCGAAGAATTTCA-GATCTTATCTCCCTG-AGATTATAGCG
1 TCCCTGAGATTACAGTGGAA-CGA-ATAA-AAATAAAGGATCTTATCTCTCTGAAG-TTACAGTA
* * * * *
39490006 GAGCTA-ATTGAAGCGAGTAATCCTATC
62 GAG-TAGATCGCATC-AG--GTCTTATC
* * * *
39490033 TCCCTAAGATTACAGTGGAGCGAATTAAAATAAAGGATCTTATCTTTCTGAAGTTACAGTAGAGT
1 TCCCTGAGATTACAGTGGAACGAATAAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGT
*
39490098 AGATGGCATCAGGTCTTATC
66 AGATCGCATCAGGTCTTATC
39490118 TCCCTGAGATTACAGTGGAA
1 TCCCTGAGATTACAGTGGAA
39490138 TAGACCGAAG
Statistics
Matches: 142, Mismatches: 42, Indels: 22
0.69 0.20 0.11
Matches are distributed among these distances:
85 42 0.30
86 3 0.02
87 36 0.25
88 35 0.25
89 4 0.03
90 22 0.15
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (85 bp):
TCCCTGAGATTACAGTGGAACGAATAAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGT
AGATCGCATCAGGTCTTATC
Found at i:39490210 original size:175 final size:174
Alignment explanation
Indices: 39489806--39490228 Score: 537
Period size: 175 Copynumber: 2.4 Consensus size: 174
39489796 AAAATGGTGA
* * * * * * * *
39489806 ATCTTATCTCCCTGAGATTACAGTGGAGCAAATTGAAACCAGTAATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGA-TATAGCGGAGCTAATCGAAGCGAGTAATCCTATCTCCCTAAGATTAC
* *
39489871 AGTGGAACGGATAAAAATAAAGAATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
65 AGTGGAGCGAATAAAAATAAAGAATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* **
39489936 TCTTATCACCCTGAGATTATAGTGGAATAGACCGAAGAATTTCAG
130 TCTTATCACCCTGAGATTACAGTGGAATAGACCGAAGAATACCAG
*
39489981 ATCTTATCTCCCTGAGATTATAGCGGAGCTAATTGAAGCGAGTAATCCTATCTCCCTAAGATTAC
1 ATCTTATCTCCCTGAGA-TATAGCGGAGCTAATCGAAGCGAGTAATCCTATCTCCCTAAGATTAC
* * * *
39490046 AGTGGAGCGAATTAAAATAAAGGATCTTATCTTTCTGAAGTTACAGTAGAGTAGATGGCATCAGG
65 AGTGGAGCGAATAAAAATAAAGAATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* *
39490111 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTACCAG
130 TCTTATCACCCTGAGATTACAGTGGAATAGACCGAAGAATACCAG
* * * * *
39490156 ATCTTGTCTCCCTGAGCA-ATAGTGGAGC-AGATCGAAGATG-GTGAATCTTATCTCCATAAGAT
1 ATCTTATCTCCCTGAG-ATATAGCGGAGCTA-ATCGAAG-CGAGT-AATCCTATCTCCCTAAGAT
*
39490218 TACAGTAGAGC
62 TACAGTGGAGC
39490229 AGATTGAAGC
Statistics
Matches: 219, Mismatches: 25, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
173 1 0.00
174 17 0.08
175 200 0.91
176 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (174 bp):
ATCTTATCTCCCTGAGATATAGCGGAGCTAATCGAAGCGAGTAATCCTATCTCCCTAAGATTACA
GTGGAGCGAATAAAAATAAAGAATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGT
CTTATCACCCTGAGATTACAGTGGAATAGACCGAAGAATACCAG
Found at i:39490273 original size:44 final size:44
Alignment explanation
Indices: 39490199--39490364 Score: 197
Period size: 44 Copynumber: 3.8 Consensus size: 44
39490189 GAAGATGGTG
* ** *
39490199 AATCTTATCTCCATAAGATTACAGTAGAGCAGATTGAAGCTAGT
1 AATCCTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGT
**
39490243 AATCCTATCTCTTTAAGATTACAGCGGAGCAGATTGAAGCCAGT
1 AATCCTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGT
* * * *
39490287 AATCCTATCTCCCTGAGATTACAGCGGAGCAAATTAAAGCCAGT
1 AATCCTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGT
* * * * *
39490331 AATCCTATTTCCCTGATATTACAGTGGAGCAGAT
1 AATCCTATCTCCATAAGATTACAGCGGAGCAGAT
39490365 GAAAATAAAG
Statistics
Matches: 107, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 107 1.00
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (44 bp):
AATCCTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGT
Found at i:39490355 original size:263 final size:269
Alignment explanation
Indices: 39489995--39490525 Score: 577
Period size: 275 Copynumber: 2.0 Consensus size: 269
39489985 TATCTCCCTG
* * * *
39489995 AGATTATAGCGGAGCTAATTGAAGCGAGTAATCCTATCTCCCTAAGATTACAGTGGAGCGAATTA
1 AGATTACAGCGGAGCTAATTGAAGCCAGTAATCCTATCTCCCTAAGATTACAGCGGAGCAAATTA
* * * * *
39490060 AAATAAAGGATCTTATCTTTCTGAAGTTACAGT-AG-AG-T-AGAT-GG-C-ATCAGGTCTTATC
66 AAAGAAAGAATCCTATCTTCCTGAAGTTACAGTGAGCAGATAAAATAGGACTATCAGGTCTTATC
* * *
39490118 TCCCTGAGATTACAGTGGAATAGACCGAAG-AGTACCAGATCTTGTCTCCCTGAGCAATAGTGGA
131 T-CCTGAGATTACAGTGGAATAGACCGAAGAAAT-CCAGATCTTATCTCCCTAAGCAATAGTGGA
** * * *
39490182 GC-AGATCGAAGATGGTGAATCTTATCTCCATAAGATTACAGTAGAGCAGATTGAA-GCTAGTAA
194 GCTA-ATAAAAAATGGTGAATCTGATCTCCATAAGATTACAGCAGAGCAGATT-AATGCTAGTAA
39490245 TCCTATCTCTTTA
257 TCCTATCTCTTTA
*
39490258 AGATTACAGCGGAGC-AGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCGGAGCAAATT
1 AGATTACAGCGGAGCTA-ATTGAAGCCAGTAATCCTATCTCCCTAAGATTACAGCGGAGCAAATT
**
39490322 -AAAGCCAGTAATCCTAT-TTCCCTGATA-TTACAGTGGAGCAGATGAAAATAAAGGATCTTATC
65 AAAAGAAAG-AATCCTATCTT-CCTGA-AGTTACAGT-GAGCAGAT-AAAAT--AGGA-C-TATC
* * *
39490384 AGGTCTTATCTCCTGAGATTATAGTGGAATAGACTGAATAAATCCAGATCTTATCTCCCTAAGCA
121 AGGTCTTATCTCCTGAGATTACAGTGGAATAGACCGAAGAAATCCAGATCTTATCTCCCTAAGCA
* * * * * *
39490449 TTAGTGGAGCTAATAAAAAATGGTGAATCTGATCTCCCTGAGATTATAGCGGAGCATATTAATGC
186 ATAGTGGAGCTAATAAAAAATGGTGAATCTGATCTCCATAAGATTACAGCAGAGCAGATTAATGC
39490514 TAGTAATCCTAT
251 TAGTAATCCTAT
39490526 TACCCTGAGA
Statistics
Matches: 219, Mismatches: 29, Indels: 28
0.79 0.11 0.10
Matches are distributed among these distances:
262 8 0.04
263 74 0.34
264 1 0.00
265 2 0.01
266 2 0.01
267 1 0.00
269 3 0.01
272 2 0.01
274 3 0.01
275 106 0.48
276 17 0.08
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (269 bp):
AGATTACAGCGGAGCTAATTGAAGCCAGTAATCCTATCTCCCTAAGATTACAGCGGAGCAAATTA
AAAGAAAGAATCCTATCTTCCTGAAGTTACAGTGAGCAGATAAAATAGGACTATCAGGTCTTATC
TCCTGAGATTACAGTGGAATAGACCGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGC
TAATAAAAAATGGTGAATCTGATCTCCATAAGATTACAGCAGAGCAGATTAATGCTAGTAATCCT
ATCTCTTTA
Found at i:39490755 original size:44 final size:44
Alignment explanation
Indices: 39490707--39490847 Score: 212
Period size: 44 Copynumber: 3.2 Consensus size: 44
39490697 TATCTTCATA
39490707 AGATTACAGCGGAGCAGAATGAAGCCAGTAATCCTATCTCCCTG
1 AGATTACAGCGGAGCAGAATGAAGCCAGTAATCCTATCTCCCTG
* * *
39490751 AGATTACAGCGGAGCAGATTGAAGCTAGTAATCTTATCTCCCTG
1 AGATTACAGCGGAGCAGAATGAAGCCAGTAATCCTATCTCCCTG
* *
39490795 AGATTACAGCGGAGTA-AATTGAAGCCAGTAATCCTATTTCCCTG
1 AGATTACAGCGGAGCAGAA-TGAAGCCAGTAATCCTATCTCCCTG
*
39490839 ATATTACAG
1 AGATTACAG
39490848 TGGAACGGAT
Statistics
Matches: 87, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
43 1 0.01
44 86 0.99
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (44 bp):
AGATTACAGCGGAGCAGAATGAAGCCAGTAATCCTATCTCCCTG
Found at i:39490787 original size:218 final size:217
Alignment explanation
Indices: 39490384--39490803 Score: 483
Period size: 218 Copynumber: 1.9 Consensus size: 217
39490374 GGATCTTATC
* *
39490384 AGGTCTTATCTCCTGAGATTATAGTGGAATAGACTGAATAAATCCAGATCTTATCTCCCTAAGCA
1 AGGTCTTATCTCCTGAGATTACAGTGGAATAGACAGAATAAATCCAGATCTTATCTCCCTAAGCA
* * * * * * * *
39490449 TTAGTGGAGCTAATAAAAAATGGTGAATCTGATCTCCCTGAGATTATAGCGGAGCATATTAATGC
66 ATAGTAGAGCTAATAAAAAACGGTGAATCTGATCTCCATAAGATTACAGCGGAGCAAATGAATGC
* * * * *
39490514 TAGTAATCCTATTACCCTGAGATTACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGA-
131 CAGTAATCCTATTACCCTGAGATTACAGCGGAACAGATTAAAAT-AAGAATCTTATCTCCCTGAG
39490578 AGTTACAGTAGAGTAGATCGCATT
195 A-TTACAGTAGAGTAGATCGCATT
** * *
39490602 AGGTCTTATCTCCCTGAGATTACAGTGGAATAGACAGAA-AGTTCCAGATCTTGTCTCCCTGAGC
1 AGGTCTTATCT-CCTGAGATTACAGTGGAATAGACAGAATAAATCCAGATCTTATCTCCCTAAGC
** * * *
39490666 AATAGTAGAGC-AGATCGAAGACGGTGAATCTTATCTTCATAAGATTACAGCGGAGCAGAATGAA
65 AATAGTAGAGCTA-ATAAAAAACGGTGAATCTGATCTCCATAAGATTACAGCGGAGCA-AATGAA
* **
39490730 -GCCAGTAATCCTATCT-CCCTGAGATTACAGCGGAGCAGATTGAAGCT-AGTAATCTTATCTCC
128 TGCCAGTAATCCTAT-TACCCTGAGATTACAGCGGAACAGATT-AAAATAAG-AATCTTATCTCC
39490792 CTGAGATTACAG
190 CTGAGATTACAG
39490804 CGGAGTAAAT
Statistics
Matches: 168, Mismatches: 27, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
217 3 0.02
218 131 0.78
219 34 0.20
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (217 bp):
AGGTCTTATCTCCTGAGATTACAGTGGAATAGACAGAATAAATCCAGATCTTATCTCCCTAAGCA
ATAGTAGAGCTAATAAAAAACGGTGAATCTGATCTCCATAAGATTACAGCGGAGCAAATGAATGC
CAGTAATCCTATTACCCTGAGATTACAGCGGAACAGATTAAAATAAGAATCTTATCTCCCTGAGA
TTACAGTAGAGTAGATCGCATT
Found at i:39490791 original size:493 final size:494
Alignment explanation
Indices: 39489981--39490876 Score: 1494
Period size: 493 Copynumber: 1.8 Consensus size: 494
39489971 AGAATTTCAG
*
39489981 ATCTTATCTCCCTGAGATTATAGCGGAGCTAATTGAAGCGAGTAATCCTATCTCCCTAAGATTAC
1 ATCTGATCTCCCTGAGATTATAGCGGAGCTAATTGAAGCGAGTAATCCTATCTCCCTAAGATTAC
* * *
39490046 AGTGGAGCGAATTAAAATAAAGGATCTTATCTTTCTGAAGTTACAGTAGAGTAGATGGCATCAGG
66 AGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
*
39490111 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAGTACCAGATCTTGTCTCCCTGAGCAAT
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACAGAAGAGTACCAGATCTTGTCTCCCTGAGCAAT
* * * * *
39490176 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCATAAGATTACAGTAGAGCAGATTGAAGCTA
196 AGTAGAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCAGAGCAGAATGAAGCCA
**
39490241 GTAATCCTATCTCTTTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGAT
261 GTAATCCTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGAT
*
39490306 TACAGCGGAGCAAATTAAAGCCAGTAATCCTATTTCCCTGATATTACAGTGGAGCAGATGAAAAT
326 TACAGCGGAGCAAATTAAAGCCAGTAATCCTATTTCCCTGATATTACAGTGGAACAGATGAAAAT
*
39490371 AAAGGATCTTATCAGGTCTTATCTCCTGAGATTATAGTGGAATAGACTGAATAAATCCAGATCTT
391 AAAGGAACTTATCAGGTCTTATCTCCTGAGATTATAGTGGAATAGACTGAATAAATCCAGATCTT
39490436 ATCTCCCTAAGCATTAGTGGAGCTAATAAAAAATGGTGA
456 ATCTCCCTAAGCATTAGTGGAGCTAATAAAAAATGGTGA
* *
39490475 ATCTGATCTCCCTGAGATTATAGCGGAGC-ATATT-AATGCTAGTAATCCTAT-TACCCTGAGAT
1 ATCTGATCTCCCTGAGATTATAGCGGAGCTA-ATTGAA-GCGAGTAATCCTATCT-CCCTAAGAT
* *
39490537 TACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATT
63 TACAGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
*
39490602 AGGTCTTATCTCCCTGAGATTACAGTGGAATAGACAGAA-AGTTCCAGATCTTGTCTCCCTGAGC
128 AGGTCTTATCTCCCTGAGATTACAGTGGAATAGACAGAAGAGTACCAGATCTTGTCTCCCTGAGC
* *
39490666 AATAGTAGAGCAGATCGAAGACGGTGAATCTTATCTTCATAAGATTACAGCGGAGCAGAATGAAG
193 AATAGTAGAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCAGAGCAGAATGAAG
* * *
39490731 CCAGTAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCTTATCTCCCTGA
258 CCAGTAATCCTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGA
* * *
39490796 GATTACAGCGGAGTAAATTGAAGCCAGTAATCCTATTTCCCTGATATTACAGTGGAACGGATGAA
323 GATTACAGCGGAGCAAATTAAAGCCAGTAATCCTATTTCCCTGATATTACAGTGGAACAGATGAA
39490861 AATAAAGGAACTTATC
388 AATAAAGGAACTTATC
39490877 TCTCTATAGT
Statistics
Matches: 372, Mismatches: 27, Indels: 7
0.92 0.07 0.02
Matches are distributed among these distances:
493 222 0.60
494 150 0.40
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (494 bp):
ATCTGATCTCCCTGAGATTATAGCGGAGCTAATTGAAGCGAGTAATCCTATCTCCCTAAGATTAC
AGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTGAGATTACAGTGGAATAGACAGAAGAGTACCAGATCTTGTCTCCCTGAGCAAT
AGTAGAGCAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCAGAGCAGAATGAAGCCA
GTAATCCTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGAT
TACAGCGGAGCAAATTAAAGCCAGTAATCCTATTTCCCTGATATTACAGTGGAACAGATGAAAAT
AAAGGAACTTATCAGGTCTTATCTCCTGAGATTATAGTGGAATAGACTGAATAAATCCAGATCTT
ATCTCCCTAAGCATTAGTGGAGCTAATAAAAAATGGTGA
Found at i:39490877 original size:306 final size:307
Alignment explanation
Indices: 39490474--39491077 Score: 804
Period size: 306 Copynumber: 2.0 Consensus size: 307
39490464 AAAAATGGTG
* * *
39490474 AATCTGATCTCCCTGAGATTATAGCGGAGCATATTAATGCTAGTAATCCTATTACCCTGAGATTA
1 AATCTGATCTCCCTGAGATTACAGCGGAGCAAATTAATGCCAGTAATCCTATTACCCTGAGATTA
* * * *
39490539 CAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATTA
66 CAGTGGAACGGATGAAAATAAAGGAACTTATCTCTCT-ATAGTTACAGTACAGTAGATCGCATCA
** * * * **
39490603 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACAGAA-AGTTCCAGATCTTGTCTCCCTGAGCA
130 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACAGAATAAATCCAGATATTATCTCCCTAAAAA
** * * * * *
39490667 ATAGTAGAGC-AGATCGAAGACGGTGAATCTTATCTTCATAAGATTACAGCGGAGCAGAATGAAG
195 ATAGTAGAGCTA-ATAAAAAACGGTGAATCTGATCTCCATAAGATTACAGCGGAACAGAATAAAG
*
39490731 CCAGTAATCCTATCT-CCCTGAGATTACAGCGGAGCAGATTGAAGCTAGT
259 CCAGTAATCCTAT-TACCCTGAGATTACAGCGGAACAGATTGAAGCTAGT
* * * *
39490780 AATCTTATCTCCCTGAGATTACAGCGGAGTAAATTGAA-GCCAGTAATCCTATTTCCCTGATATT
1 AATCTGATCTCCCTGAGATTACAGCGGAGCAAATT-AATGCCAGTAATCCTATTACCCTGAGATT
*
39490844 ACAGTGGAACGGATGAAAATAAAGGAACTTATCTCTCTATAGTTACAGTACTGTAGATCGCATCA
65 ACAGTGGAACGGATGAAAATAAAGGAACTTATCTCTCTATAGTTACAGTACAGTAGATCGCATCA
*
39490909 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACTGAATAAATCCAGATATTATCTCCCTAAAAA
130 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACAGAATAAATCCAGATATTATCTCCCTAAAAA
* * * * * * *
39490974 ATAGTGGAGCTAATAAAAAATGGTGAATCTGATCTCCCTGAGATTATAGTGGAACAGATTAAAGC
195 ATAGTAGAGCTAATAAAAAACGGTGAATCTGATCTCCATAAGATTACAGCGGAACAGAATAAAGC
* *
39491039 TAGTAATCCTATTACCCTGAGATTACAGTGGAACAGATT
260 CAGTAATCCTATTACCCTGAGATTACAGCGGAACAGATT
39491078 AAAATAAAGG
Statistics
Matches: 256, Mismatches: 37, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
305 1 0.00
306 150 0.59
307 104 0.41
308 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (307 bp):
AATCTGATCTCCCTGAGATTACAGCGGAGCAAATTAATGCCAGTAATCCTATTACCCTGAGATTA
CAGTGGAACGGATGAAAATAAAGGAACTTATCTCTCTATAGTTACAGTACAGTAGATCGCATCAG
GTCTTATCTCCCTGAGATTACAGTGGAATAGACAGAATAAATCCAGATATTATCTCCCTAAAAAA
TAGTAGAGCTAATAAAAAACGGTGAATCTGATCTCCATAAGATTACAGCGGAACAGAATAAAGCC
AGTAATCCTATTACCCTGAGATTACAGCGGAACAGATTGAAGCTAGT
Found at i:39490891 original size:88 final size:88
Alignment explanation
Indices: 39490691--39490878 Score: 220
Period size: 88 Copynumber: 2.1 Consensus size: 88
39490681 CGAAGACGGT
* * *
39490691 GAATCTTATCTTCATAAGATTACAGCGGAGCAGAATGAAGCCAGTAATCCTATCTCCCTGAGATT
1 GAATCTTATCTCCCTGAGATTACAGCGGAGCAGAATGAAGCCAGTAATCCTATCTCCCTGAGATT
* **
39490756 ACAGCGGAGCAGATTGAAGCTAG
66 ACAGCGGAACAGATTGAAAATAG
* * * *
39490779 TAATCTTATCTCCCTGAGATTACAGCGGAGTA-AATTGAAGCCAGTAATCCTATTTCCCTGATAT
1 GAATCTTATCTCCCTGAGATTACAGCGGAGCAGAA-TGAAGCCAGTAATCCTATCTCCCTGAGAT
* *
39490843 TACAGTGGAACGGA-TGAAAATAAAG
65 TACAGCGGAACAGATTGAAAAT--AG
39490868 GAA-CTTATCTC
1 GAATCTTATCTC
39490879 TCTATAGTTA
Statistics
Matches: 84, Mismatches: 13, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
87 7 0.08
88 73 0.87
89 4 0.05
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (88 bp):
GAATCTTATCTCCCTGAGATTACAGCGGAGCAGAATGAAGCCAGTAATCCTATCTCCCTGAGATT
ACAGCGGAACAGATTGAAAATAG
Found at i:39491046 original size:219 final size:219
Alignment explanation
Indices: 39490780--39491285 Score: 651
Period size: 219 Copynumber: 2.3 Consensus size: 219
39490770 TGAAGCTAGT
* * *
39490780 AATCTTATCTCCCTGAGATTACAGCGGAGTAAATTGAAGCCAGTAATCCTATTTCCCTGATATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* *
39490845 CAGTGGAACGGATGAAAATAAAGGA-ACTTATCTCTCT-ATAGTTACAGTACTGTAGATCGCATC
66 CAGTGGAACAGATGAAAATAAAGGATA-TTATCTCTCTGA-AGTTACAGTACAGTAGATCGCATC
*
39490908 AGGTCTTATCTCCCTGAGATTACAGTGGAATAGA-CTGAATAAATCCAGATATTATCTCCCTAAA
129 AGGTCTTATCTCCCTGAGATTACAGTGGAATAGATC-GAAGAAATCCAGATATTATCTCCCTAAA
* *
39490972 AAATAGTGGAGCTA-ATAAAAAATGGTG
193 AAATAGTGGAG-AAGATAAAAAACGGTG
* * * * * * *
39490999 AATCTGATCTCCCTGAGATTATAGTGGAACAGATTAAAGCTAGTAATCCTATTACCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* *
39491064 CAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGGAACAGATGAAAATAAAGGATATTATCTCTCTGAAGTTACAGTACAGTAGATCGCATCAG
* * ** * * * * **
39491129 GTCTTTTCTCCCTGAGATTACTGTGGAATAGATCGAAGAGTTCCAGATCTTGTCTCCTTGAGCAA
131 GTCTTATCTCCCTGAGATTACAGTGGAATAGATCGAAGAAATCCAGATATTATCTCCCTAAAAAA
** *
39491194 TAGTGGAGAAGATCGAAGACGGTG
196 TAGTGGAGAAGATAAAAAACGGTG
* * *
39491218 AATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
39491283 CAG
66 CAG
39491286 CGGAGTAAAT
Statistics
Matches: 243, Mismatches: 40, Indels: 8
0.84 0.14 0.03
Matches are distributed among these distances:
218 1 0.00
219 239 0.98
220 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (219 bp):
AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
CAGTGGAACAGATGAAAATAAAGGATATTATCTCTCTGAAGTTACAGTACAGTAGATCGCATCAG
GTCTTATCTCCCTGAGATTACAGTGGAATAGATCGAAGAAATCCAGATATTATCTCCCTAAAAAA
TAGTGGAGAAGATAAAAAACGGTG
Found at i:39491286 original size:44 final size:44
Alignment explanation
Indices: 39491218--39491339 Score: 181
Period size: 44 Copynumber: 2.8 Consensus size: 44
39491208 GAAGACGGTG
* * *
39491218 AATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGT
1 AATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGT
* *
39491262 AATCCTATCTCCCTGAGATTACAGCGGAGTAAATTGAAGCCAGT
1 AATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGT
* *
39491306 AATCCTATTTCCCTGAGATTACAGTGGAGCAGAT
1 AATCCTATCTCCCTGAGATTACAGCGGAGCAGAT
39491340 GAAAATAAAG
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 69 1.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.26
Consensus pattern (44 bp):
AATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGT
Found at i:39491301 original size:482 final size:482
Alignment explanation
Indices: 39490736--39491767 Score: 1622
Period size: 482 Copynumber: 2.1 Consensus size: 482
39490726 TGAAGCCAGT
* * * *
39490736 AATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCTTATCTCCCTGAGATTA
1 AATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTA
* *
39490801 CAGCGGAGTAAATTGAAGCCAGTAATCCTATTTCCCTGATATTACAGTGGAACGGATGAAAATAA
66 CAGCGGAGTAAATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTGGAACAGATGAAAATAA
* *
39490866 AGGAACTTATCTCTCTATAGTTACAGTACTGTAGATCGCATCAGGTCTTATCTCCCTGAGATTAC
131 AGGAACTTATCTCTCTAAAGTTACAGTACAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTAC
*
39490931 AGTGGAATAGACTGAATAAATCCAGATATTATCTCCCTAAAAAATAGTGGAGCTAATAAAAAATG
196 AGTGGAATAGACTGAAGAAATCCAGATATTATCTCCCTAAAAAATAGTGGAGCTAATAAAAAATG
* * * * *
39490996 GTGAATCTGATCTCCCTGAGATTATAGTGGAA-CAGATTAAAGCTAGTAATCCTATTACCCTGAG
261 GTGAATCTAATCTCCCTGAGATTACAG-CGAAGCAGATTAAAGCCAGTAATCCTATTACCCTAAG
39491060 ATTACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCA
325 ATTACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCA
* * * * * *
39491125 TCAGGTCTTTTCTCCCTGAGATTACTGTGGAATAGATCGAAGAGTTCCAGATCTTGTCTC-CTTG
390 TCAGGTCTTATCTCACTGAGATTACTGTGGAATAGACCGAAGAATTCCAGATCTTATCTCTC-TA
* *
39491189 AGCAATAGTGGAG-AAGATCGAAGACGGTG
454 AGCAATAGTAGAGCAA-ATCGAAAACGGTG
*
39491218 AATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTA
1 AATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTA
*
39491283 CAGCGGAGTAAATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTGGAGCAGATGAAAATAA
66 CAGCGGAGTAAATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTGGAACAGATGAAAATAA
* * *
39491348 AGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTTCCTGAGATTAC
131 AGGAACTTATCTCTCTAAAGTTACAGTACAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTAC
* **
39491413 AGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAATG
196 AGTGGAATAGACTGAAGAAATCCAGATATTATCTCCCTAAAAAATAGTGGAGCTAATAAAAAATG
* * *
39491478 GTGAATCTAATCTCCCTGAGATTACAGCGAAGCAGATTGAAGCCAGTAATCCTCTTTCCCTAAGA
261 GTGAATCTAATCTCCCTGAGATTACAGCGAAGCAGATTAAAGCCAGTAATCCTATTACCCTAAGA
* * * *
39491543 TTACAGTGGAACGGATTAAAATACAGGATCTTATCTCTCTGAAGTTACAGTAGAGTATATCGCAT
326 TTACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
* *
39491608 CAGGTCTTATCTCATTGAGATTACTGTGGAATAGACCTAAGAATTCCAGATCTTATCTCTCTAAG
391 CAGGTCTTATCTCACTGAGATTACTGTGGAATAGACCGAAGAATTCCAGATCTTATCTCTCTAAG
* *
39491673 CAATAGTAGAGCTAATCGAAAATGGTG
456 CAATAGTAGAGCAAATCGAAAACGGTG
*
39491700 AATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCT-ATGATT
1 AATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGA-GATT
39491764 ACAG
65 ACAG
39491768 TGGAACGAAT
Statistics
Matches: 503, Mismatches: 43, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
481 4 0.01
482 497 0.99
483 2 0.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (482 bp):
AATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTA
CAGCGGAGTAAATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTGGAACAGATGAAAATAA
AGGAACTTATCTCTCTAAAGTTACAGTACAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTAC
AGTGGAATAGACTGAAGAAATCCAGATATTATCTCCCTAAAAAATAGTGGAGCTAATAAAAAATG
GTGAATCTAATCTCCCTGAGATTACAGCGAAGCAGATTAAAGCCAGTAATCCTATTACCCTAAGA
TTACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
CAGGTCTTATCTCACTGAGATTACTGTGGAATAGACCGAAGAATTCCAGATCTTATCTCTCTAAG
CAATAGTAGAGCAAATCGAAAACGGTG
Found at i:39491360 original size:263 final size:263
Alignment explanation
Indices: 39490480--39491548 Score: 998
Period size: 263 Copynumber: 4.1 Consensus size: 263
39490470 GGTGAATCTG
* *
39490480 ATCTCCCTGAGATTATAGCGGAGCATATT-AATGCTAGTAATCCTATTACCCTGAGATTACAGTG
1 ATCTCCCTGAGATTACAGCGGAGCAGATTGAA-GCTAGTAATCCTATTACCCTGAGATTACAGTG
* * *
39490544 GAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATTAGGTCTT
65 GAACAGATGAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
* *
39490609 ATCTCCCTGAGATTACAGTGGAATAGACAGAA-AGTTCCAGATCTTGTCTCCCTGAGCAATAGTA
130 ATCTCCCTGAGATTACAGTGGAATAGACAGAAGAGTTCCAGATCTTATCTCCCTGAGCAATAGTG
* * *
39490673 GAGCAGATCGAAGACGGTGAATCTTATCTTCATAAGATTACAGCGGAGCAGAATGAAGCCAGTAA
195 GAGAAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAA
39490738 TCCT
260 TCCT
* *
39490742 ATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCTTATCT-CCCTGAGATTACAGCG
1 ATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTAT-TACCCTGAGATTACAGTG
** * *** * * * * * *** * *
39490806 GAGTAAATTG--AAGCCAGTAATCCTATTTCCCTGATA-TTACAGTGGAACGGAT-GAAAATAAA
65 GAACAGA-TGAAAATAAAG-GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCG--CAT-CA
* * * * * * *
39490867 GGAACTTATCTCTCT-ATAGTTACAGT--ACT-G-TAGATCGCA--T-CAGGTCTTATCTCCCTG
124 GG-TCTTATCTCCCTGAGA-TTACAGTGGAATAGACAGA-AG-AGTTCCAGATCTTATCTCCCTG
* * ** * * * ** * *
39490924 AG-ATTACAGTGGA-ATAGA-CTGAATA-AATCCAGATATTATCTCCCTAA-AAAATAGTGGAGC
185 AGCA--ATAGTGGAGA-AGATC-GAAGACGGT-GA-ATCTTATCTCCATAAGATTACAGCGGAGC
** ****
39490984 TA-ATAAAAAATGGTGAAT-CT
244 -AGATTGAAGCCAGT-AATCCT
* * * *
39491004 GATCTCCCTGAGATTATAGTGGAACAGATTAAAGCTAGTAATCCTATTACCCTGAGATTACAGTG
1 -ATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTACCCTGAGATTACAGTG
* *
39491069 GAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
65 GAACAGATGAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTT
* * * *
39491134 TTCTCCCTGAGATTACTGTGGAATAGATC-GAAGAGTTCCAGATCTTGTCTCCTTGAGCAATAGT
130 ATCTCCCTGAGATTACAGTGGAATAGA-CAGAAGAGTTCCAGATCTTATCTCCCTGAGCAATAGT
39491198 GGAGAAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTA
194 GGAGAAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTA
39491263 ATCCT
259 ATCCT
* * * *
39491268 ATCTCCCTGAGATTACAGCGGAGTAAATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTGG
1 ATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTACCCTGAGATTACAGTGG
* *
39491333 AGCAGATGAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTA
66 AACAGATGAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTA
* * ** *
39491398 TCTTCCTGAGATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGG
131 TCTCCCTGAGATTACAGTGGAATAGACAGAAGAGTTCCAGATCTTATCTCCCTGAGCAATAGTGG
* ** * * * * * *
39491463 AGCTA-ATAAAAAATGGTGAATCTAATCTCCCTGAGATTACAGCGAAGCAGATTGAAGCCAGTAA
196 AG-AAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAA
39491527 TCCT
260 TCCT
* * *
39491531 CTTTCCCTAAGATTACAG
1 ATCTCCCTGAGATTACAG
39491549 TGGAACGGAT
Statistics
Matches: 627, Mismatches: 135, Indels: 89
0.74 0.16 0.10
Matches are distributed among these distances:
260 16 0.03
261 32 0.05
262 123 0.20
263 372 0.59
264 47 0.07
265 36 0.06
266 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (263 bp):
ATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTACCCTGAGATTACAGTGG
AACAGATGAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTA
TCTCCCTGAGATTACAGTGGAATAGACAGAAGAGTTCCAGATCTTATCTCCCTGAGCAATAGTGG
AGAAGATCGAAGACGGTGAATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAAT
CCT
Found at i:39491538 original size:219 final size:217
Alignment explanation
Indices: 39491268--39491888 Score: 933
Period size: 219 Copynumber: 2.8 Consensus size: 217
39491258 CAGTAATCCT
* *
39491268 ATCTCCCTGAGATTACAGCGGAGTAAATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTGG
1 ATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCT-AGATTACAGTGG
* * *
39491333 AGCAGATGAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTA
65 AAC-GATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTA
*
39491398 TCTTCCTGAGATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGG
129 TCTTCCTGAGATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTAG
39491463 AGCTAATAAAAAATGGTGAATCTA
194 AGCTAATAAAAAATGGTGAATCTA
* *
39491487 ATCTCCCTGAGATTACAGCGAAGCAGATTGAAGCCAGTAATCCTCTTTCCCTAAGATTACAGTGG
1 ATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCT-AGATTACAGTGG
* *
39491552 AACGGATTAAAATACAGGATCTTATCTCTCTGAAGTTACAGTAGAGTATATCGCATCAGGTCTTA
65 AAC-GATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTA
* * * *
39491617 TC-TCATTGAGATTACTGTGGAATAGACCT-AAGAATTCCAGATCTTATCTCTCTAAGCAATAGT
129 TCTTC-CTGAGATTACAGTGGAATAGA-CTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGT
** *
39491680 AGAGCTAATCGAAAATGGTGAATCTT
192 AGAGCTAATAAAAAATGGTGAATCTA
*
39491706 ATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTATGATTACAGTGG
1 ATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTA-GATTACAGTGG
* *
39491771 AACGAATTAAAATAAAGGATCTTATTTCTCTGAAGTTACTGTAGAGTAGATCGCATCAGGTCTTA
65 AACG-ATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTA
* * *
39491836 TCTCCCTGAGATTACAGTGGAATAGACCGAAGAATAT-GAGATCTTATCTCCCT
129 TCTTCCTGAGATTACAGTGGAATAGACTGAAGAA-ATCCAGATCTTATCTCCCT
39491889 GAGATTATAG
Statistics
Matches: 362, Mismatches: 33, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
218 5 0.01
219 353 0.98
220 4 0.01
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (217 bp):
ATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTAGATTACAGTGGA
ACGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATC
TTCCTGAGATTACAGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTAGAG
CTAATAAAAAATGGTGAATCTA
Found at i:39491885 original size:175 final size:175
Alignment explanation
Indices: 39491701--39492067 Score: 603
Period size: 175 Copynumber: 2.1 Consensus size: 175
39491691 AAAATGGTGA
*
39491701 ATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTATGATTAC
1 ATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTAAGATTAC
* * * *
39491766 AGTGGAAC-GAATTAAAATAAAGGATCTTATTTCTCTGAAGTTACTGTAGAGTAGATCGCATCAG
66 AGTGGAACAG-ATTAAAAGAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAG
*
39491830 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATAT-GAG
130 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAAT-TCCAG
* * * *
39491876 ATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAATCTAGTAATCCTATTTCCCTAAGATTAC
1 ATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTAAGATTAC
39491941 AGTGGAACAGATTAAAAGAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACAGATTAAAAGAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAGG
39492006 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
*
39492051 ATCTTATCTCCCAAAGA
1 ATCTTATCTCCCTAAGA
39492068 AATAGTGGAG
Statistics
Matches: 178, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
174 1 0.01
175 176 0.99
176 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (175 bp):
ATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTAAGATTAC
AGTGGAACAGATTAAAAGAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAG
Found at i:39491934 original size:219 final size:219
Alignment explanation
Indices: 39491262--39491953 Score: 923
Period size: 219 Copynumber: 3.2 Consensus size: 219
39491252 TGAAGCCAGT
* * *
39491262 AATCCTATCTCCCTGAGATTACAGCGGAGTAAATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
1 AATCCTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCT-AGATTA
* * *
39491327 CAGTGGAGC-AGATGAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCA
65 CAGTGGAACGA-ATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
* *
39491391 GGTCTTATCTTCCTGAGATTACAGTGGAATAGACTGAAGAA-ATCCAGATCTTATCTCCCTAAGC
129 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATATCCAGATCTTATCTCCCTAAGC
* ** *
39491455 AATAGTGGAGCTAATAAAAAATGGTG
194 AATAGCGGAGCTAATTGAAAATAGTG
* * *
39491481 AAT-CTAATCTCCCTGAGATTACAGCGAAGCAGATTGAAGCCAGTAATCCTCTTTCCCTAAGATT
1 AATCCT-ATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCT-AGATT
* * *
39491545 ACAGTGGAACGGATTAAAATACAGGATCTTATCTCTCTGAAGTTACAGTAGAGTATATCGCATCA
64 ACAGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
** * * *
39491610 GGTCTTATCTCATTGAGATTACTGTGGAATAGACCTAAGAAT-TCCAGATCTTATCTCTCTAAGC
129 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATATCCAGATCTTATCTCCCTAAGC
** * *
39491674 AATAGTAGAGCTAATCGAAAATGGTG
194 AATAGCGGAGCTAATTGAAAATAGTG
*
39491700 AATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTATGATTA
1 AATCCTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTA-GATTA
* *
39491765 CAGTGGAACGAATTAAAATAAAGGATCTTATTTCTCTGAAGTTACTGTAGAGTAGATCGCATCAG
65 CAGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
* *
39491830 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATAT-GAGATCTTATCTCCCTGAG-A
130 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATATCCAGATCTTATCTCCCTAAGCA
**
39491893 TTATAGCGGAGC-AGATTGAATCTAGT-
195 --ATAGCGGAGCTA-ATTGAAAATAGTG
* * *
39491919 AATCCTATTTCCCTAAGATTACAGTGGAACAGATT
1 AATCCTATCTCCCTAAGATTACAGCGGAGCAGATT
39491954 AAAAGAAAGG
Statistics
Matches: 417, Mismatches: 47, Indels: 18
0.87 0.10 0.04
Matches are distributed among these distances:
218 4 0.01
219 395 0.95
220 18 0.04
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (219 bp):
AATCCTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTAGATTAC
AGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATATCCAGATCTTATCTCCCTAAGCAA
TAGCGGAGCTAATTGAAAATAGTG
Found at i:39491935 original size:482 final size:480
Alignment explanation
Indices: 39490736--39491907 Score: 1358
Period size: 482 Copynumber: 2.4 Consensus size: 480
39490726 TGAAGCCAGT
* * * * *
39490736 AATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCTTATCTCCCTGAGATTA
1 AATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTA
** * ** * * * *
39490801 CAGCGGAGTAAATTGAAGCCAGTAATCCTATTTCCCTGATATTACAGTGGAACGGATGAAAATAA
66 CAGCGGAACAAATTAAAGAAAGTAATCCTATTTCCCTGAGATTACAGTAGAGCAGATG-AAATAA
* * * *** * *
39490866 AGGAACTTATCTCTCTATAGTTACAGTACTGTAGATCGCATCAGGTCTTATCTCCCTGAGATTAC
130 AGGATCTTATCTCCCTAAAGTTACAGTAGAATAGACCGAATCAGGTCTTATCTCCCTGAGATTAC
* * * ** *
39490931 AGTGGAATAGACTGAATAAATCCAGATATTATCTCCCTAAAAAATAGTGGAGCTAATAAAAAATG
195 AGCGGAACAGACT-AAGAAATCCAGATCCTATCTCCCTAAGAAATAGTGGAGCTAATAAAAAATG
* * * * *
39490996 GTGAATCTGATCTCCCTGAGATTATAGTGGAACAGATTAAAGCTAGTAATCCTATTACCCTGAGA
259 GTGAATCTAATCTCCCTGAGATTACAGTCGAACAGATTAAAGCCAGTAATCCTATTACCCTAAGA
39491061 TTACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
324 TTACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
* * * * * *
39491126 CAGGTCTTTTCTCCCTGAGATTACTGTGGAATAGATCGAAGAGTTCCAGATCTTGTCTCCTTGAG
389 CAGGTCTTATCTCACTGAGATTACTGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCTTAAG
* *
39491191 CAATAGTGGAGAAGATCGAAGACGGTG
454 CAATAGTAGAGAAGATCGAAAACGGTG
39491218 AATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTA
1 AATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTA
** * ** *
39491283 CAGCGGAGTAAATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAGTGGAGCAGATGAAAATAA
66 CAGCGGAACAAATTAAAGAAAGTAATCCTATTTCCCTGAGATTACAGTAGAGCAGATG-AAATAA
* * * * *
39491348 AGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTTCCTGAGATTAC
130 AGGATCTTATCTCCCTAAAGTTACAGTAGAATAGACCGAATCAGGTCTTATCTCCCTGAGATTAC
* * * *
39491413 AGTGGAATAGACTGAAGAAATCCAGATCTTATCTCCCTAAGCAATAGTGGAGCTAATAAAAAATG
195 AGCGGAACAGACT-AAGAAATCCAGATCCTATCTCCCTAAGAAATAGTGGAGCTAATAAAAAATG
* * *
39491478 GTGAATCTAATCTCCCTGAGATTACAG-CGAAGCAGATTGAAGCCAGTAATCCTCTTTCCCTAAG
259 GTGAATCTAATCTCCCTGAGATTACAGTCGAA-CAGATTAAAGCCAGTAATCCTATTACCCTAAG
* * * *
39491542 ATTACAGTGGAACGGATTAAAATACAGGATCTTATCTCTCTGAAGTTACAGTAGAGTATATCGCA
323 ATTACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCA
* *
39491607 TCAGGTCTTATCTCATTGAGATTACTGTGGAATAGACCTAAGAATTCCAGATCTTATCT-CTCTA
388 TCAGGTCTTATCTCACTGAGATTACTGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCT-TA
* *
39491671 AGCAATAGTAGAGCTA-ATCGAAAATGGTG
452 AGCAATAGTAGAG-AAGATCGAAAACGGTG
* *
39491700 AATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCT-ATGATT
1 AATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGA-GATT
* * * * * * * * *
39491764 ACAGTGGAACGAATTAAAATAAAG-GATCTTATTTCTCTGA-AGTTACTGTAGAGTAGATCG-CA
65 ACAGCGGAACAAATT-AAAGAAAGTAATCCTATTTCCCTGAGA-TTACAGTAGAGCAGAT-GAAA
* * *
39491826 T-CAGG-TCTTATCTCCCT-GAGATTACAGTGGAATAGACCGAAGAAT-ATGAGATCTTATCTCC
127 TAAAGGATCTTATCTCCCTAAAG-TTACAGTAGAATAGACC---GAATCA-G-G-TCTTATCTCC
* *
39491887 CTGAGATTATAGCGGAGCAGA
185 CTGAGATTACAGCGGAACAGA
39491908 TTGAATCTAG
Statistics
Matches: 606, Mismatches: 70, Indels: 26
0.86 0.10 0.04
Matches are distributed among these distances:
478 2 0.00
479 25 0.04
480 3 0.00
481 10 0.02
482 533 0.88
483 7 0.01
484 26 0.04
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (480 bp):
AATCTTATCTCCATAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTA
CAGCGGAACAAATTAAAGAAAGTAATCCTATTTCCCTGAGATTACAGTAGAGCAGATGAAATAAA
GGATCTTATCTCCCTAAAGTTACAGTAGAATAGACCGAATCAGGTCTTATCTCCCTGAGATTACA
GCGGAACAGACTAAGAAATCCAGATCCTATCTCCCTAAGAAATAGTGGAGCTAATAAAAAATGGT
GAATCTAATCTCCCTGAGATTACAGTCGAACAGATTAAAGCCAGTAATCCTATTACCCTAAGATT
ACAGTGGAACAGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
GGTCTTATCTCACTGAGATTACTGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCTTAAGCA
ATAGTAGAGAAGATCGAAAACGGTG
Found at i:39492049 original size:394 final size:393
Alignment explanation
Indices: 39491481--39492454 Score: 1497
Period size: 394 Copynumber: 2.5 Consensus size: 393
39491471 AAAAATGGTG
* * * *
39491481 AATCTAATCTCCCTGAGATTACAGCGAAGCAGATTGAAGCCAGTAATCCTCTTTCCCTAAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTAAGATTA
* *
39491546 CAGTGGAACGGATTAAAATACAGGATCTTATCTCTCTGAAGTTACAGTAGAGTATATCGCATCAG
66 CAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
** * * * * *
39491611 GTCTTATCTCATTGAGATTACTGTGGAATAGACCTAAGAATTCCAGATCTTATCTCTCTAAGCAA
131 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTCCAGATCTTATCTCCCAAAGAAA
39491676 TAGTAGAGCTAATCGAAAATGGTGAATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCC
196 TAGTAGAGCTAATCGAAAATGGTGAATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCC
* *
39491741 AGTAATCCTATTTCCCTATGATTACAGTGGAACGAATTAAAATAAAGGATCTTATTTCTCTGAAG
261 AGTAATCCTATTTCCCTAAGATTACAGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAG
* ** * *
39491806 TTACTGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAAT
326 TTACAGTAGAGTAGATCAAATCAAGTCTTATCTCCCTGAGATTACAATGGAATAGACCGAAGAAT
39491871 ATG-
391 -TGC
* *
39491874 AGATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAATCTAGTAATCCTATTTCCCTAAGATT
1 A-ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTAAGATT
* * *
39491939 ACAGTGGAACAGATTAAAAGAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCA
65 ACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
*
39492004 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCAAAGAA
130 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTCCAGATCTTATCTCCCAAAGAA
* * * *
39492069 ATAGTGGAGCTAATCTAAATTGGTGAATCTTATCTCCCTAAGATTACAGCGGAGCAGATTTAAGC
195 ATAGTAGAGCTAATCGAAAATGGTGAATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGC
* * *
39492134 CAGTAATCCTATTTCCCTAAGATTACAGTGGAACGGATTAAAATATAGTATCTTATCTCTCTGAA
260 CAGTAATCCTATTTCCCTAAGATTACAGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAA
* *
39492199 GTTACAGTAGAGTAGATCAAATCAAGTCTTATGTCCCTGAGATTACAATGGAATAGATCGAAGAA
325 GTTACAGTAGAGTAGATCAAATCAAGTCTTATCTCCCTGAGATTACAATGGAATAGACCGAAGAA
39492264 TTGC
390 TTGC
* * *
39492268 AATTGTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
1 AA-TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTAAGATT
* * *
39492333 ACAGTGGAGCGGATTAAAATAAAGGATCTTA--TCTCTGAAGTTACAGTAGAGCAGATCGTATCA
65 ACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
** *
39492396 GGTCTTATCTCCCTGAGATTACAGTGGAAT-GACCAAAGAATTTTAGACCTTATCTCCCA
130 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTCCAGATCTTATCTCCCA
39492455 GATAATGTAG
Statistics
Matches: 529, Mismatches: 49, Indels: 8
0.90 0.08 0.01
Matches are distributed among these distances:
391 25 0.05
392 59 0.11
393 4 0.01
394 441 0.83
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (393 bp):
AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATTTCCCTAAGATTA
CAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
GTCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTCCAGATCTTATCTCCCAAAGAAA
TAGTAGAGCTAATCGAAAATGGTGAATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCC
AGTAATCCTATTTCCCTAAGATTACAGTGGAACGAATTAAAATAAAGGATCTTATCTCTCTGAAG
TTACAGTAGAGTAGATCAAATCAAGTCTTATCTCCCTGAGATTACAATGGAATAGACCGAAGAAT
TGC
Found at i:39492109 original size:175 final size:175
Alignment explanation
Indices: 39491701--39492128 Score: 578
Period size: 175 Copynumber: 2.4 Consensus size: 175
39491691 AAAATGGTGA
* * * * * * *
39491701 ATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTATGATTAC
1 ATCTTATCTCCCAAAGATAATAGCGGAGCAGATTAAATCTAGTAATCCTATTTCCCTAAGATTAC
* * * *
39491766 AGTGGAAC-GAATTAAAATAAAGGATCTTATTTCTCTGAAGTTACTGTAGAGTAGATCGCATCAG
66 AGTGGAACAG-ATTAAAAGAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAG
*
39491830 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATATGAG
130 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATATCAG
** * *
39491876 ATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAATCTAGTAATCCTATTTCCCTAAGATTAC
1 ATCTTATCTCCCAAAGATAATAGCGGAGCAGATTAAATCTAGTAATCCTATTTCCCTAAGATTAC
39491941 AGTGGAACAGATTAAAAGAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACAGATTAAAAGAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAGG
39492006 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAAT-TCCAG
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATAT-CAG
* * * *
39492051 ATCTTATCTCCCAAAGA-AATAGTGGAGCTA-ATCTAAAT-TGGTGAATCTTATCTCCCTAAGAT
1 ATCTTATCTCCCAAAGATAATAGCGGAGC-AGAT-TAAATCTAGT-AATCCTATTTCCCTAAGAT
* *
39492113 TACAGCGGAGCAGATT
63 TACAGTGGAACAGATT
39492129 TAAGCCAGTA
Statistics
Matches: 228, Mismatches: 20, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
174 15 0.07
175 212 0.93
176 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (175 bp):
ATCTTATCTCCCAAAGATAATAGCGGAGCAGATTAAATCTAGTAATCCTATTTCCCTAAGATTAC
AGTGGAACAGATTAAAAGAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATATCAG
Found at i:39492279 original size:175 final size:173
Alignment explanation
Indices: 39492098--39492425 Score: 512
Period size: 175 Copynumber: 1.9 Consensus size: 173
39492088 TTGGTGAATC
* *
39492098 TTATCTCCCTAAGATTACAGCGGAGCAGATTTAAGCCAGTAATCCTATTTCCCTAAGATTACAGT
1 TTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTAAGATTACAGT
* * *
39492163 GGAACGGATTAAAATATAGTATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCAAATCAAGTCT
66 GGAACGGATTAAAATAAAGGATCTTA--TCTCTGAAGTTACAGTAGAGCAGATCAAATCAAGTCT
*
39492228 TATGTCCCTGAGATTACAATGGAATAGATCGAAGAATTGCAATTG
129 TATCTCCCTGAGATTACAATGGAATAGATCGAAGAATTGCAATTG
* * *
39492273 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGT
1 TTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTAAGATTACAGT
* ** *
39492338 GGAGCGGATTAAAATAAAGGATCTTATCTCTGAAGTTACAGTAGAGCAGATCGTATCAGGTCTTA
66 GGAACGGATTAAAATAAAGGATCTTATCTCTGAAGTTACAGTAGAGCAGATCAAATCAAGTCTTA
*
39492403 TCTCCCTGAGATTACAGTGGAAT
131 TCTCCCTGAGATTACAATGGAAT
39492426 GACCAAAGAA
Statistics
Matches: 139, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
173 56 0.40
175 83 0.60
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (173 bp):
TTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTAAGATTACAGT
GGAACGGATTAAAATAAAGGATCTTATCTCTGAAGTTACAGTAGAGCAGATCAAATCAAGTCTTA
TCTCCCTGAGATTACAATGGAATAGATCGAAGAATTGCAATTG
Found at i:39492324 original size:219 final size:219
Alignment explanation
Indices: 39491880--39492347 Score: 611
Period size: 219 Copynumber: 2.1 Consensus size: 219
39491870 TATGAGATCT
* * *
39491880 TATCTCCCTGAGATTATAGCGGAGCAGATTGAATCTAGTAATCCTATTTCCCTAAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTAAGATTACAGTG
** *
39491945 GAACAGATTAAAAGAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAGGTCTT
66 GAACAGATTAAAAGAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCAAATCAAGTCTT
* * *
39492010 ATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCAGATCTTATCTCCCAAAGAAATAGTG
131 ATCTCCCTGAGATTACAATGGAATAGACCGAAGAATTCCAGATCTTATCTCCCAAAGAAACAGCG
* * *
39492075 GAGCTAATCTAAATTGGTGAATCT
196 GAGCTAATCTAAACTAGTGAATCC
* *
39492099 TATCTCCCTAAGATTACAGCGGAGCAGATTTAAGCCAGTAATCCTATTTCCCTAAGATTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTAAGATTACAGTG
* * * * *
39492164 GAACGGATTAAAATATAGTATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCAAATCAAGTCTT
66 GAACAGATTAAAAGAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCAAATCAAGTCTT
* * * * ** *
39492229 ATGTCCCTGAGATTACAATGGAATAGATCGAAGAATTGCA-ATTGTTATCTCCCTGAGATTACAG
131 ATCTCCCTGAGATTACAATGGAATAGACCGAAGAATTCCAGA-TCTTATCTCCCAAAGA-AACAG
*
39492293 CGGAGC-AGAT-TGAAGCTAGT-AATCC
194 CGGAGCTA-ATCT-AAACTAGTGAATCC
* *
39492318 TATCTCCCTGAGATTACAGTGGAGCGGATT
1 TATCTCCCTGAGATTACAGCGGAGCAGATT
39492348 AAAATAAAGG
Statistics
Matches: 215, Mismatches: 30, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
218 1 0.00
219 199 0.93
220 15 0.07
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (219 bp):
TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTAAGATTACAGTG
GAACAGATTAAAAGAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCAAATCAAGTCTT
ATCTCCCTGAGATTACAATGGAATAGACCGAAGAATTCCAGATCTTATCTCCCAAAGAAACAGCG
GAGCTAATCTAAACTAGTGAATCC
Found at i:39492366 original size:44 final size:42
Alignment explanation
Indices: 39491701--39492423 Score: 195
Period size: 44 Copynumber: 16.6 Consensus size: 42
39491691 AAAATGGTGA
* * *** *
39491701 ATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-AAAATAG-G
* * *
39491745 ATCCTATTTCCCT-ATGATTACAGTGGAAC-GAATTAAAATAAAGG
1 ATCTTATCTCCCTGA-GATTACAGTGGAGCAG-ATTAAAAT--AGG
* * * * * ***
39491789 ATCTTATTTCTCTGA-AGTTACTGTAGAGTAGA-TCGCATCAGG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAAT-AGG
** **
39491831 -TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATATGAG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGA-TTAA-AATA-G-G
* * ** *
39491876 ATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAATCTAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-AAAATAG-G
* * * * *
39491920 ATCCTATTTCCCTAAGATTACAGTGGAACAGATTAAAAGAAAGG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-AAA-ATAGG
* * * * ***
39491964 ATCTTATCTCTCTGAAATTACAGTAGAGTAGA-TCGCATCAGG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT-AGG
** **
39492006 -TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTCCA-G
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGA-TTAA-AA-T--AGG
** * * * *
39492051 ATCTTATCTCCCAAAGA-AATAGTGGAGCTA-ATCTAAATTGGTG
1 ATCTTATCTCCCTGAGATTACAGTGGAGC-AGAT-TAAAATAG-G
* * *** *
39492094 AATCTTATCTCCCTAAGATTACAGCGGAGCAGATTTAAGCCAGTA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGA-TTAAAATAG-G
* * * * * *
39492139 ATCCTATTTCCCTAAGATTACAGTGGAACGGATTAAAATATAGT
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-AAA-ATAGG
* * * * *
39492183 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGA-TCAAATCAAG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAAT-AGG
* * ** * * *
39492225 -TCTTATGTCCCTGAGATTACAATGGAATAGATCGAAGAATTGCA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGAT-TAA-AATAG-G
* * ** *
39492269 ATTGTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTA
1 A-TCTTATCTCCCTGAGATTACAGTGGAGCAGATT-AAAATAG-G
* *
39492314 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT--AGG
* ***
39492358 ATCTTATCT--CTGA-AGTTACAGTAGAGCAGA-TCGTATCAGG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAAT-AGG
39492398 -TCTTATCTCCCTGAGATTACAGTGGA
1 ATCTTATCTCCCTGAGATTACAGTGGA
39492424 ATGACCAAAG
Statistics
Matches: 487, Mismatches: 143, Indels: 101
0.67 0.20 0.14
Matches are distributed among these distances:
39 8 0.02
40 3 0.01
41 95 0.20
42 29 0.06
43 20 0.04
44 214 0.44
45 43 0.09
46 75 0.15
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (42 bp):
ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAGG
Found at i:39492546 original size:50 final size:50
Alignment explanation
Indices: 39492471--39492609 Score: 174
Period size: 50 Copynumber: 2.8 Consensus size: 50
39492461 GTAGTGGAGC
* * *
39492471 AGATTAAAGCCACAACAGCGAATCTTGCTTCCCCGACATTGCAGTC-AAGA
1 AGATTAAAGCTACAACAGTGAATCTTGCTTCCCCGACATTGCAG-CGAACA
* * *
39492521 AGATTAAAGCTACAACAGTGAATCTTACTTCCCAGATATTGCAGCGGAACA
1 AGATTAAAGCTACAACAGTGAATCTTGCTTCCCCGACATTGCAGC-GAACA
**
39492572 A-ATTAAAGCTACAATGGTGAATCTTGCTTCCCCGACAT
1 AGATTAAAGCTACAACAGTGAATCTTGCTTCCCCGACAT
39492610 CACATTTACG
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
49 1 0.01
50 71 0.93
51 4 0.05
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (50 bp):
AGATTAAAGCTACAACAGTGAATCTTGCTTCCCCGACATTGCAGCGAACA
Found at i:39494109 original size:16 final size:13
Alignment explanation
Indices: 39494073--39494104 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
39494063 TTATAGTATT
39494073 TAATA-TTATTTG
1 TAATATTTATTTG
39494085 TAATATTTATTTG
1 TAATATTTATTTG
39494098 TAATATT
1 TAATATT
39494105 GTTTAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 5 0.26
13 14 0.74
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.59
Consensus pattern (13 bp):
TAATATTTATTTG
Found at i:39494465 original size:17 final size:19
Alignment explanation
Indices: 39494445--39494479 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
39494435 ATTTTAATAT
39494445 ATGTA-TAT-ATTTATAAA
1 ATGTATTATAATTTATAAA
39494462 ATGTATTATAATTTATAA
1 ATGTATTATAATTTATAA
39494480 TTTATAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 3 0.19
19 8 0.50
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (19 bp):
ATGTATTATAATTTATAAA
Found at i:39502920 original size:16 final size:16
Alignment explanation
Indices: 39502899--39502930 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
39502889 ATTAAATTAA
*
39502899 TTACTTAGATGAAAAT
1 TTACTTAAATGAAAAT
39502915 TTACTTAAATGAAAAT
1 TTACTTAAATGAAAAT
39502931 GAGATGAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.38
Consensus pattern (16 bp):
TTACTTAAATGAAAAT
Found at i:39506129 original size:40 final size:40
Alignment explanation
Indices: 39506074--39506154 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
39506064 ATGATAAATG
39506074 TTGTTATTTATTTTCTTTGAAACTTACTAAGCTTTACGCT
1 TTGTTATTTATTTTCTTTGAAACTTACTAAGCTTTACGCT
39506114 TTGTTATTTATTTTCTTTGAAACTTACTAAGCTTTACGCT
1 TTGTTATTTATTTTCTTTGAAACTTACTAAGCTTTACGCT
39506154 T
1 T
39506155 ACTCCCGTTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.22, C:0.15, G:0.10, T:0.53
Consensus pattern (40 bp):
TTGTTATTTATTTTCTTTGAAACTTACTAAGCTTTACGCT
Found at i:39513441 original size:50 final size:50
Alignment explanation
Indices: 39513349--39513469 Score: 134
Period size: 50 Copynumber: 2.4 Consensus size: 50
39513339 TGAGGTTCTG
* * * *
39513349 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATA
1 AGAGGTCCCACGTAAGACCATGTCTAGGACATGACATGGGCACCGAGATA
* * * * *
39513399 AGAGGTCCCCCGTAAGACTATGTCTAGGATATGACATGGGCACCGATATG
1 AGAGGTCCCACGTAAGACCATGTCTAGGACATGACATGGGCACCGAGATA
** *
39513449 AGAACTCCCATGTAAGACCAT
1 AGAGGTCCCACGTAAGACCAT
39513470 ATATGGGATA
Statistics
Matches: 57, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.29, C:0.24, G:0.27, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCACGTAAGACCATGTCTAGGACATGACATGGGCACCGAGATA
Found at i:39524514 original size:33 final size:34
Alignment explanation
Indices: 39524463--39524537 Score: 116
Period size: 33 Copynumber: 2.2 Consensus size: 34
39524453 AAATTTAAAC
*
39524463 AAATTAATTACTAACACTTATTTAAGTTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
39524497 AAATTAATT-CTAACACTTATTTGAGCTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
39524530 AATTTAAT
1 AAATTAAT
39524538 AAACTAACTC
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
33 29 0.76
34 9 0.24
ACGTcount: A:0.43, C:0.12, G:0.07, T:0.39
Consensus pattern (34 bp):
AAATTAATTACTAACACTTATTTAAGCTGAACTA
Found at i:39544280 original size:49 final size:47
Alignment explanation
Indices: 39544054--39544412 Score: 540
Period size: 47 Copynumber: 7.6 Consensus size: 47
39544044 CCCTTCGGGA
* * * * * *
39544054 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
39544100 CTCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CT-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
39544148 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
39544195 CTTATCACATATATACACTTTCACATTCATCCCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
39544242 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
39544291 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
39544340 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
39544387 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
39544413 CACAATTATC
Statistics
Matches: 289, Mismatches: 20, Indels: 7
0.91 0.06 0.02
Matches are distributed among these distances:
46 2 0.01
47 192 0.66
48 2 0.01
49 93 0.32
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:39544448 original size:96 final size:94
Alignment explanation
Indices: 39544054--39544419 Score: 474
Period size: 96 Copynumber: 3.9 Consensus size: 94
39544044 CCCTTCGGGA
* * * * * * * *
39544054 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-CTCTGTCACATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT-TATCACATATATATA
* *
39544118 CTTTCACATTCATCACATCGGCCATTA-GGC
65 CATTCACATTCATCA-ATTGGCCATTACGGC
* * *
39544148 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * *
39544213 TTTCACATTCATCCCATCGGCCATTA-GGC
66 ATTCACATTCAT-CAATTGGCCATTACGGC
39544242 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
39544307 ACACTTTCACATTCATCACATTGGCCATT-CGGC
64 ACA--TTCACATTCATCA-ATTGGCCATTACGGC
39544340 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
39544405 ATTCACA-TCA-CAATT
66 ATTCACATTCATCAATT
39544420 ATCCAAATAT
Statistics
Matches: 248, Mismatches: 16, Indels: 19
0.88 0.06 0.07
Matches are distributed among these distances:
91 3 0.01
92 2 0.01
93 3 0.01
94 92 0.37
95 3 0.01
96 113 0.46
97 1 0.00
98 31 0.12
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ATTCACATTCATCAATTGGCCATTACGGC
Found at i:39552244 original size:27 final size:27
Alignment explanation
Indices: 39552187--39552244 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
39552177 GTCTCAACCT
*
39552187 TTTGAAGTTATGTGCAATGCAAGGGAC
1 TTTGAAGTTATGTGCAATGCAAGGGAA
* *
39552214 TTTGAAGTTATGTGCGATGCAAGTGAA
1 TTTGAAGTTATGTGCAATGCAAGGGAA
39552241 TTTG
1 TTTG
39552245 TTATGCATAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.28, C:0.09, G:0.29, T:0.34
Consensus pattern (27 bp):
TTTGAAGTTATGTGCAATGCAAGGGAA
Found at i:39556232 original size:17 final size:17
Alignment explanation
Indices: 39556210--39556242 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
39556200 ATAAGTACAC
*
39556210 ATTGTCATTGCATTTTT
1 ATTGTCATTACATTTTT
39556227 ATTGTCATTACATTTT
1 ATTGTCATTACATTTT
39556243 CATGTTAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.58
Consensus pattern (17 bp):
ATTGTCATTACATTTTT
Found at i:39558537 original size:27 final size:27
Alignment explanation
Indices: 39558506--39559235 Score: 710
Period size: 27 Copynumber: 27.1 Consensus size: 27
39558496 TGGGCCTTAG
*
39558506 AATGACCGAAATACCCCCGATGGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
* * *
39558533 AATGACCAAAATAACCTCGAAGGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
* * *
39558560 AATGGCCGAAATACCCTCAAAGGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
* *
39558587 AATGATCGAAATACCCTCGAAGGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
* **
39558614 AATGACCAAAATACCCCTAAAGGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
* *
39558641 AATGATCGAAATACCCTCGAAGGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
** **
39558668 AATGATTGAAATACTACCGAAGGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
* * * *
39558695 AACGATCGAAATACCCTCAAAGGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
* * *
39558722 AATGATCGAAATACCCTCGAAAGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
* * * *
39558749 AATAACCAAAATA-CCCTGATGGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
* *
39558775 AATGACCAAAATACCCTCGAAGGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
* *
39558802 AATGACCAAAATACCCTCGAAGGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
* *
39558829 AATAACCGAAATACCCCCGAAAGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
* * * *
39558856 TATGATCGAAATACCCTCAAAGGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
* * * *
39558883 AATCACTGAAATTCCCCCGATGGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
** ** *
39558910 AATGACTAAAATACCATCGATGGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
* * ** *
39558937 AATAATCGAAATACCGTCGAATGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
**
39558964 AATGACTAAAATACCCCCGAAGGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
** *
39558991 AATGATTGAAATACCCCCAAAGGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
*
39559018 AATGATCGAAATACCCCCGAAGGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
* * ***
39559045 AATGATCGAAATACCCTCGACTCGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
* * *
39559072 AATGATCGAAATACCCCTGATGGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
* * *
39559099 AATGATCGAAATAGCCTC-AATGGGTAA
1 AATGACCGAAATACCCCCGAA-GGGTAA
* * *
39559126 AATGATCGAAATACCTCCGATGGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
* * *
39559153 AATGACCAAAATACCCCCAAAAGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
* *
39559180 AATGACCGAAATACCCCTGAAAGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
* *
39559207 AATGACTGAAATA-CCCTGAAGGGTAA
1 AATGACCGAAATACCCCCGAAGGGTAA
39559233 AAT
1 AAT
39559236 TACTGATATA
Statistics
Matches: 585, Mismatches: 115, Indels: 7
0.83 0.16 0.01
Matches are distributed among these distances:
26 37 0.06
27 547 0.94
28 1 0.00
ACGTcount: A:0.43, C:0.20, G:0.19, T:0.18
Consensus pattern (27 bp):
AATGACCGAAATACCCCCGAAGGGTAA
Found at i:39559508 original size:26 final size:26
Alignment explanation
Indices: 39559472--39559522 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
39559462 GCCACATATA
*
39559472 CTATTACTGGCAGCTTTATTGCGATT
1 CTATTACTGGCAGCTCTATTGCGATT
*
39559498 CTATTACTGGCAGCTCTGTTGCGAT
1 CTATTACTGGCAGCTCTATTGCGAT
39559523 ATTGGTGTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.39
Consensus pattern (26 bp):
CTATTACTGGCAGCTCTATTGCGATT
Found at i:39559666 original size:28 final size:28
Alignment explanation
Indices: 39559626--39559751 Score: 135
Period size: 28 Copynumber: 4.4 Consensus size: 28
39559616 ACTACACTGT
*
39559626 ACTGTTATTGTATTGGGCTAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
39559654 ACTGTTACTGTATTGGGCTAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
* * **
39559682 ACTATTACTATATCAGGCTAAGGCCACAC
1 ACTGTTACTGTATTGGGCTAAGGCC-CAC
* * * *
39559711 TGTACTGTTACTGAATAGGGCTCAGGCCCAG
1 ---ACTGTTACTGTATTGGGCTAAGGCCCAC
39559742 ACTGTTACTG
1 ACTGTTACTG
39559752 CATGTTGTAT
Statistics
Matches: 82, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
28 58 0.71
29 3 0.04
31 2 0.02
32 19 0.23
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.29
Consensus pattern (28 bp):
ACTGTTACTGTATTGGGCTAAGGCCCAC
Found at i:39567260 original size:47 final size:47
Alignment explanation
Indices: 39567206--39567751 Score: 939
Period size: 47 Copynumber: 11.6 Consensus size: 47
39567196 TATTTGAATA
*
39567206 AATGTGAAAGTGTATATATGTGATAAGACCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
39567253 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
39567300 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
39567349 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
39567396 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
39567443 AATGTGAAAGTGTATATATGTGTTAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
39567490 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
39567537 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
39567584 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGCGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
39567631 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
39567678 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
39567725 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
39567752 TCCCGAAGGG
Statistics
Matches: 474, Mismatches: 23, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
47 429 0.91
49 45 0.09
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:39569206 original size:23 final size:23
Alignment explanation
Indices: 39569174--39569246 Score: 59
Period size: 23 Copynumber: 3.4 Consensus size: 23
39569164 AGAGTGATGT
39569174 ATTCGGGCTAAGTCCCGAAGAGC
1 ATTCGGGCTAAGTCCCGAAGAGC
* * *
39569197 ATTCGTGCT-AGT---G-A-TGT
1 ATTCGGGCTAAGTCCCGAAGAGC
*
39569214 ATCCGGGCTAAGTCCCGAAGAGC
1 ATTCGGGCTAAGTCCCGAAGAGC
*
39569237 ATTCGTGCTA
1 ATTCGGGCTA
39569247 GTGATGTATC
Statistics
Matches: 35, Mismatches: 9, Indels: 12
0.62 0.16 0.21
Matches are distributed among these distances:
17 8 0.23
18 4 0.11
19 1 0.03
21 1 0.03
22 4 0.11
23 17 0.49
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (23 bp):
ATTCGGGCTAAGTCCCGAAGAGC
Found at i:39569689 original size:40 final size:40
Alignment explanation
Indices: 39569166--39569677 Score: 763
Period size: 40 Copynumber: 12.8 Consensus size: 40
39569156 GAGAATTGAG
*
39569166 AGTGATGTATTCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
39569206 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
39569246 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
39569286 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
39569326 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
39569366 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
39569406 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
39569446 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
39569486 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
39569526 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
39569566 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
39569606 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
39569646 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
39569678 ATCATGCTGG
Statistics
Matches: 431, Mismatches: 41, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 431 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:39572835 original size:47 final size:47
Alignment explanation
Indices: 39572781--39573232 Score: 760
Period size: 47 Copynumber: 9.6 Consensus size: 47
39572771 TATTTGAATA
* *
39572781 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
39572828 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
39572877 AATGTGAAAGTGTATATATGTGATAAGACCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
39572924 AATGTGAAAGTGTATATATGTGTTAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
39572971 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
39573018 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
39573065 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGCGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
39573112 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
39573159 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
39573206 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
39573233 TCCCGAAGGG
Statistics
Matches: 383, Mismatches: 20, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 338 0.88
49 45 0.12
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:39588130 original size:204 final size:204
Alignment explanation
Indices: 39587780--39588188 Score: 818
Period size: 204 Copynumber: 2.0 Consensus size: 204
39587770 AAATAAAACT
39587780 CTAAAAGTAGTTCAAGAACTATTTAGGGACTAAACTGAATAAATCATAAAATTTTGGGCAAAACT
1 CTAAAAGTAGTTCAAGAACTATTTAGGGACTAAACTGAATAAATCATAAAATTTTGGGCAAAACT
39587845 ACAAAGCAGGGGTCACACGGCCATGTGCCCAGGCCATGTGGAAGGGTTACACAACCATGTGGCCA
66 ACAAAGCAGGGGTCACACGGCCATGTGCCCAGGCCATGTGGAAGGGTTACACAACCATGTGGCCA
39587910 GGTCATGTAACAGACTGTGGTTGTGTGGCAAATGTAAAATTGAACCTGCAAGGGGGCCACGACCG
131 GGTCATGTAACAGACTGTGGTTGTGTGGCAAATGTAAAATTGAACCTGCAAGGGGGCCACGACCG
39587975 TGTGGCAAG
196 TGTGGCAAG
39587984 CTAAAAGTAGTTCAAGAACTATTTAGGGACTAAACTGAATAAATCATAAAATTTTGGGCAAAACT
1 CTAAAAGTAGTTCAAGAACTATTTAGGGACTAAACTGAATAAATCATAAAATTTTGGGCAAAACT
39588049 ACAAAGCAGGGGTCACACGGCCATGTGCCCAGGCCATGTGGAAGGGTTACACAACCATGTGGCCA
66 ACAAAGCAGGGGTCACACGGCCATGTGCCCAGGCCATGTGGAAGGGTTACACAACCATGTGGCCA
39588114 GGTCATGTAACAGACTGTGGTTGTGTGGCAAATGTAAAATTGAACCTGCAAGGGGGCCACGACCG
131 GGTCATGTAACAGACTGTGGTTGTGTGGCAAATGTAAAATTGAACCTGCAAGGGGGCCACGACCG
39588179 TGTGGCAAG
196 TGTGGCAAG
39588188 C
1 C
39588189 CAAATGGGAA
Statistics
Matches: 205, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
204 205 1.00
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (204 bp):
CTAAAAGTAGTTCAAGAACTATTTAGGGACTAAACTGAATAAATCATAAAATTTTGGGCAAAACT
ACAAAGCAGGGGTCACACGGCCATGTGCCCAGGCCATGTGGAAGGGTTACACAACCATGTGGCCA
GGTCATGTAACAGACTGTGGTTGTGTGGCAAATGTAAAATTGAACCTGCAAGGGGGCCACGACCG
TGTGGCAAG
Found at i:39588817 original size:142 final size:142
Alignment explanation
Indices: 39588561--39588841 Score: 562
Period size: 142 Copynumber: 2.0 Consensus size: 142
39588551 CGGGATTAAG
39588561 ATGTACTTACCAATTCTTGAAAAAGATTAAGGATATTATTTAACGATAGAGCAAGAAATCAAGAA
1 ATGTACTTACCAATTCTTGAAAAAGATTAAGGATATTATTTAACGATAGAGCAAGAAATCAAGAA
39588626 GCAAAGTTGATTTGGTATGAGAATGAAAATATTCAATACAAAAAGATGGAAAATATGATGTAATG
66 GCAAAGTTGATTTGGTATGAGAATGAAAATATTCAATACAAAAAGATGGAAAATATGATGTAATG
39588691 TAACACCCCTAA
131 TAACACCCCTAA
39588703 ATGTACTTACCAATTCTTGAAAAAGATTAAGGATATTATTTAACGATAGAGCAAGAAATCAAGAA
1 ATGTACTTACCAATTCTTGAAAAAGATTAAGGATATTATTTAACGATAGAGCAAGAAATCAAGAA
39588768 GCAAAGTTGATTTGGTATGAGAATGAAAATATTCAATACAAAAAGATGGAAAATATGATGTAATG
66 GCAAAGTTGATTTGGTATGAGAATGAAAATATTCAATACAAAAAGATGGAAAATATGATGTAATG
39588833 TAACACCCC
131 TAACACCCC
39588842 AAACCCATAT
Statistics
Matches: 139, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
142 139 1.00
ACGTcount: A:0.46, C:0.11, G:0.17, T:0.27
Consensus pattern (142 bp):
ATGTACTTACCAATTCTTGAAAAAGATTAAGGATATTATTTAACGATAGAGCAAGAAATCAAGAA
GCAAAGTTGATTTGGTATGAGAATGAAAATATTCAATACAAAAAGATGGAAAATATGATGTAATG
TAACACCCCTAA
Found at i:39588948 original size:22 final size:21
Alignment explanation
Indices: 39588921--39588961 Score: 73
Period size: 22 Copynumber: 1.9 Consensus size: 21
39588911 TTAGTACCTC
39588921 TACATATACATGGCATAATTCA
1 TACATATACAT-GCATAATTCA
39588943 TACATATACATGCATAATT
1 TACATATACATGCATAATT
39588962 TTCCTTAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.34
Consensus pattern (21 bp):
TACATATACATGCATAATTCA
Found at i:39598466 original size:41 final size:40
Alignment explanation
Indices: 39598421--39598630 Score: 132
Period size: 41 Copynumber: 5.3 Consensus size: 40
39598411 ACCGGAGTGT
* *
39598421 AAATAGGGGCACGTATATGCAATTCAGGGGTACCAAAGTAC
1 AAATAGGGGCACGCATGTGCAATTCAGGGGTACCAAAGT-C
* * * *
39598462 AAATAAGGGCATGCATGTGTAATTTAGGGGTACCAAAGTCC
1 AAATAGGGGCACGCATGTGCAATTCAGGGGTACCAAAGT-C
* * * *
39598503 AAA-CGGGCGCACGCATGTACAATTCAAGGGTATCAAAGTC
1 AAATAGGG-GCACGCATGTGCAATTCAGGGGTACCAAAGTC
***
39598543 TAAATA-GGG---G--TGT--AATTCAGGGGTATTGAAGTC
1 -AAATAGGGGCACGCATGTGCAATTCAGGGGTACCAAAGTC
* * * *
39598576 TAAACAGGGGCACGTATGTGCAATTTAGGGGTATCAAAGTCC
1 -AAATAGGGGCACGCATGTGCAATTCAGGGGTACCAAAGT-C
* *
39598618 AAACAAGGGCACG
1 AAATAGGGGCACG
39598631 TTCGTGCAAT
Statistics
Matches: 133, Mismatches: 24, Indels: 24
0.73 0.13 0.13
Matches are distributed among these distances:
33 22 0.17
34 3 0.02
35 3 0.02
37 2 0.02
39 3 0.02
40 4 0.03
41 95 0.71
42 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.21
Consensus pattern (40 bp):
AAATAGGGGCACGCATGTGCAATTCAGGGGTACCAAAGTC
Found at i:39598567 original size:33 final size:33
Alignment explanation
Indices: 39598523--39598585 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
39598513 ACGCATGTAC
*
39598523 AATTCAAGGGTATCAAAGTCTAAATAGGGGTGT
1 AATTCAAGGGTATCAAAGTCTAAACAGGGGTGT
* **
39598556 AATTCAGGGGTATTGAAGTCTAAACAGGGG
1 AATTCAAGGGTATCAAAGTCTAAACAGGGG
39598586 CACGTATGTG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.35, C:0.10, G:0.30, T:0.25
Consensus pattern (33 bp):
AATTCAAGGGTATCAAAGTCTAAACAGGGGTGT
Found at i:39598600 original size:74 final size:74
Alignment explanation
Indices: 39598478--39598616 Score: 181
Period size: 74 Copynumber: 1.9 Consensus size: 74
39598468 GGGCATGCAT
*
39598478 GTGTAATTTAGGGGTACCAAAGTCCAAACGGGCGCACGCATGTACAATTCAAGGGTATCAAAGTC
1 GTGTAATTCAGGGGTACCAAAGTCCAAACGGGCGCACGCATGTACAATTCAAGGGTATCAAAGTC
39598543 TAAATAGGG
66 TAAATAGGG
*** * * * * *
39598552 GTGTAATTCAGGGGTATTGAAGTCTAAACAGGG-GCACGTATGTGCAATTTAGGGGTATCAAAGT
1 GTGTAATTCAGGGGTACCAAAGTCCAAAC-GGGCGCACGCATGTACAATTCAAGGGTATCAAAGT
39598616 C
65 C
39598617 CAAACAAGGG
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
74 52 0.95
75 3 0.05
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.24
Consensus pattern (74 bp):
GTGTAATTCAGGGGTACCAAAGTCCAAACGGGCGCACGCATGTACAATTCAAGGGTATCAAAGTC
TAAATAGGG
Found at i:39598631 original size:41 final size:41
Alignment explanation
Indices: 39598556--39598642 Score: 113
Period size: 41 Copynumber: 2.1 Consensus size: 41
39598546 ATAGGGGTGT
* ** * *
39598556 AATTCAGGGGTATTGAAGTCTAAACAGGGGCACGTAT-GTGC
1 AATTTAGGGGTATCAAAGTCCAAACAAGGGCACGT-TCGTGC
39598597 AATTTAGGGGTATCAAAGTCCAAACAAGGGCACGTTCGTGC
1 AATTTAGGGGTATCAAAGTCCAAACAAGGGCACGTTCGTGC
39598638 AATTT
1 AATTT
39598643 GTAACAGCCC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 1 0.03
41 39 0.98
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (41 bp):
AATTTAGGGGTATCAAAGTCCAAACAAGGGCACGTTCGTGC
Found at i:39599524 original size:17 final size:16
Alignment explanation
Indices: 39599493--39599523 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
39599483 ACTTGAGGGA
39599493 CAAAAATGTAATTTTC
1 CAAAAATGTAATTTTC
*
39599509 CAAAAATGTGATTTT
1 CAAAAATGTAATTTT
39599524 TGGACTGGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.39
Consensus pattern (16 bp):
CAAAAATGTAATTTTC
Found at i:39599816 original size:50 final size:48
Alignment explanation
Indices: 39599744--39599910 Score: 163
Period size: 51 Copynumber: 3.3 Consensus size: 48
39599734 AAAGTGAAAG
* *
39599744 TGATGGTCACGTGTGTAATACTATGTGCAGGCTACTACGTGTACCAGAA
1 TGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-CAGAA
* * * * *
39599793 TGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACTGGA
1 TGAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACAGAA
* ** *
39599842 TAGCTTCCATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATA
1 T-G-AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-CAGA-A
39599895 TTGATGGTCACATGTG
1 -TGATGGTCACATGTG
39599911 CAGGCTATTA
Statistics
Matches: 91, Mismatches: 21, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
49 8 0.09
50 35 0.38
51 42 0.46
52 3 0.03
53 2 0.02
54 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (48 bp):
TGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACAGAA
Found at i:39600168 original size:16 final size:16
Alignment explanation
Indices: 39600147--39600178 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
39600137 TGATTGAAAG
*
39600147 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
39600163 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
39600179 GCAACAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:39606211 original size:16 final size:16
Alignment explanation
Indices: 39606190--39606221 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
39606180 TGATTGAAAG
*
39606190 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
39606206 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
39606222 GCAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:39610492 original size:27 final size:27
Alignment explanation
Indices: 39610455--39610689 Score: 380
Period size: 28 Copynumber: 8.6 Consensus size: 27
39610445 TAAATTGTGC
*
39610455 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
39610482 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
*
39610510 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
39610538 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
39610566 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
39610593 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
39610620 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
39610648 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
39610675 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
39610690 GACTTAATAA
Statistics
Matches: 200, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
27 93 0.47
28 107 0.54
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:39610520 original size:55 final size:54
Alignment explanation
Indices: 39610455--39610689 Score: 380
Period size: 55 Copynumber: 4.3 Consensus size: 54
39610445 TAAATTGTGC
*
39610455 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGT
*
39610510 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGT
39610566 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
* * *
39610620 AGCACTAAGTGTGCGAGTATGATTATGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGT-TGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
39610675 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
39610690 GACTTAATAA
Statistics
Matches: 171, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
54 28 0.16
55 89 0.52
56 54 0.32
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (54 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
Found at i:39622038 original size:34 final size:34
Alignment explanation
Indices: 39621959--39622031 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 34
39621949 TAATCGATAA
* * * *
39621959 TCAACCTATGAAACTTCTTCCCTTCTTGAAAAGC
1 TCAACCAATAAAACTTCTTCCCTTCTTCAAAAAC
*
39621993 TCAACCAATAAAACTTCTTTCCTTCTTCAAAAAC
1 TCAACCAATAAAACTTCTTCCCTTCTTCAAAAAC
39622027 TCAAC
1 TCAAC
39622032 TGATAAATCT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.34, C:0.30, G:0.04, T:0.32
Consensus pattern (34 bp):
TCAACCAATAAAACTTCTTCCCTTCTTCAAAAAC
Found at i:39626649 original size:17 final size:17
Alignment explanation
Indices: 39626629--39626663 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
39626619 AGAAACATAT
39626629 TTAGAATAGAAGTAAAC
1 TTAGAATAGAAGTAAAC
39626646 TTAGAATAGAAGTAAAC
1 TTAGAATAGAAGTAAAC
39626663 T
1 T
39626664 AACAATGGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.06, G:0.17, T:0.26
Consensus pattern (17 bp):
TTAGAATAGAAGTAAAC
Found at i:39628007 original size:22 final size:23
Alignment explanation
Indices: 39627963--39628007 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
39627953 AATCCTTACA
*
39627963 TTGCCTAAGATGAAAAAATGTGC
1 TTGCCTAAGATGAAAAAAGGTGC
**
39627986 TTGCCTAAG-TGAAGTAAGGTGC
1 TTGCCTAAGATGAAAAAAGGTGC
39628008 AAATGCATGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.27
Consensus pattern (23 bp):
TTGCCTAAGATGAAAAAAGGTGC
Found at i:39632504 original size:16 final size:17
Alignment explanation
Indices: 39632480--39632525 Score: 58
Period size: 16 Copynumber: 2.7 Consensus size: 17
39632470 ATAAAGTTGT
*
39632480 ATTGGAAATTTTGTTA-
1 ATTGAAAATTTTGTTAC
39632496 ATTGAAAATTTTGTTAGC
1 ATTGAAAATTTTGTTA-C
*
39632514 ATTAAAAATTTT
1 ATTGAAAATTTT
39632526 TAGACTAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 15 0.58
18 11 0.42
ACGTcount: A:0.37, C:0.02, G:0.13, T:0.48
Consensus pattern (17 bp):
ATTGAAAATTTTGTTAC
Found at i:39654508 original size:3 final size:3
Alignment explanation
Indices: 39654500--39654569 Score: 140
Period size: 3 Copynumber: 23.3 Consensus size: 3
39654490 GAGGATCCTA
39654500 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
39654548 AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG A
39654570 TCCCACACAG
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 67 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:39657108 original size:11 final size:11
Alignment explanation
Indices: 39657087--39657126 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
39657077 AAACCATTTA
39657087 TTTCT-TCACT
1 TTTCTCTCACT
*
39657097 TCTCTCTCACT
1 TTTCTCTCACT
39657108 TTTCTCTCACT
1 TTTCTCTCACT
39657119 TTTCTCTC
1 TTTCTCTC
39657127 TTCACTCCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 4 0.15
11 23 0.85
ACGTcount: A:0.07, C:0.38, G:0.00, T:0.55
Consensus pattern (11 bp):
TTTCTCTCACT
Found at i:39657114 original size:13 final size:13
Alignment explanation
Indices: 39657096--39657132 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 13
39657086 ATTTCTTCAC
39657096 TTCTCTCTCAC-T
1 TTCTCTCTCACTT
39657108 TT-TCTCTCACTT
1 TTCTCTCTCACTT
39657120 TTCTCTCTTCACT
1 TTCTCTC-TCACT
39657133 CCCTTCCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 8 0.36
12 5 0.23
13 4 0.18
14 5 0.23
ACGTcount: A:0.08, C:0.38, G:0.00, T:0.54
Consensus pattern (13 bp):
TTCTCTCTCACTT
Found at i:39658551 original size:145 final size:144
Alignment explanation
Indices: 39658291--39658580 Score: 438
Period size: 145 Copynumber: 2.0 Consensus size: 144
39658281 AGGAAGGTTT
* * *
39658291 AGGAAAAAAAAATAGTAAACGTGAAGGAATTGTGGAAAATGAAAGAGGCGTGGGCAGTTGAAGAG
1 AGGAAAAAAAAATAGTAAACGTAAAGGAATTGAGGAAAATGAAAGAGGCGTGGGAAGTTGAAGAG
* * *
39658356 AAGTAAATGGGGTATTGGTGTTGATGGTTCAAAAAAGCTTGTAGAGTAAGTATTGTGGAATGAAA
66 AAGTAAATGGGGTATTGGTGTTGACGGTTCAAAAAAGCTTGCAGAGTAAGTATTGTAGAATGAAA
39658421 GAGGAAAAATAAAA
131 GAGGAAAAATAAAA
* * * *
39658435 AGGAAAAAGAAATTGTAAAACGTAAATGAATTGAGGAAAATTAAAGAGGCGTGGGAAGTTGAAGA
1 AGGAAAAAAAAATAGT-AAACGTAAAGGAATTGAGGAAAATGAAAGAGGCGTGGGAAGTTGAAGA
* * *
39658500 GAAGTAAATGGGGGTATTGTTGTTGACGGTTCAGAAAAGCTTGCAGA-TAAGTTTTGTAGAATGA
65 GAAGTAAAT-GGGGTATTGGTGTTGACGGTTCAAAAAAGCTTGCAGAGTAAGTATTGTAGAATGA
39658564 AAGAGGAAAAATAAAA
129 AAGAGGAAAAATAAAA
39658580 A
1 A
39658581 TGCTTTGGAG
Statistics
Matches: 131, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
144 14 0.11
145 84 0.64
146 33 0.25
ACGTcount: A:0.44, C:0.04, G:0.30, T:0.22
Consensus pattern (144 bp):
AGGAAAAAAAAATAGTAAACGTAAAGGAATTGAGGAAAATGAAAGAGGCGTGGGAAGTTGAAGAG
AAGTAAATGGGGTATTGGTGTTGACGGTTCAAAAAAGCTTGCAGAGTAAGTATTGTAGAATGAAA
GAGGAAAAATAAAA
Found at i:39659077 original size:316 final size:316
Alignment explanation
Indices: 39658493--39659119 Score: 1076
Period size: 316 Copynumber: 2.0 Consensus size: 316
39658483 GCGTGGGAAG
* * *
39658493 TTGAAGAGAAGTAAATGGGGGTATTGTTGTTGACGGTTCAGAAAAGCTTGCAGATAAGTTTTGTA
1 TTGAAGAGAAGTAAATGGCGGAATTGGTGTTGACGGTTCAGAAAAGCTTGCAGATAAGTTTTGTA
39658558 GAATGAAAGAGGAAAAATAAAAATGCTTTGGAGGGAACCCTAAAATGACCTAGCCCTAAAGCAAC
66 GAATGAAAGAGGAAAAATAAAAATGCTTTGGAGGGAACCCTAAAATGACCTAGCCCTAAAGCAAC
*
39658623 ACGTTTGGCATTTTCTTCATGGGCTACCTAATTAGCAGAATGGGCCCAACTGTCCAAAATCTTTT
131 ACGTTTGGCATTTTCTTCATGGGCTACCTAATTAGCAGAATGGGCCCAACTGTCCAAAATATTTT
* * *
39658688 CCTTAAACCGTTCTTTCTTGTCAGTCCTCATTTTCTCTTGCTTCAATATCCATTAACCCTGTTTT
196 CCTTAAACCGTTCTTTCTTGTCAATCCTCATTTTCTCTTGCTTCAATATCCAATAACCCTATTTT
* * *
39658753 CTATGGCAAAATTCTTTTTTGAAATGTTAGGGCAAACG-CCTCTTGGTACTAAATCA
261 CCATGGCAAAATTCTCTTTTGAAATGTTAGGGAAAACGACC-CTTGGTACTAAATCA
*
39658809 TTGAAGAGAAGTAAATGGCGGAATTGGTGTTGACGGTTCAGAAAAGCTTGCAGATAAGTTTTGTG
1 TTGAAGAGAAGTAAATGGCGGAATTGGTGTTGACGGTTCAGAAAAGCTTGCAGATAAGTTTTGTA
* *
39658874 GAATGAAAGGGGAAAAATAAAAATGTTTTGGAGGGAACCCTAAAATGACCTAGCCCTAAAGCAAC
66 GAATGAAAGAGGAAAAATAAAAATGCTTTGGAGGGAACCCTAAAATGACCTAGCCCTAAAGCAAC
*
39658939 ACGTTTGGCATTTTCTTCATGGGCTACCTAATTAGTAGAATGGGCCCAACTGTCCAAAATATTTT
131 ACGTTTGGCATTTTCTTCATGGGCTACCTAATTAGCAGAATGGGCCCAACTGTCCAAAATATTTT
* *
39659004 CCTTGAACCGTTCTTTCTTGTCAATCCTCATTTTCTCTTGCTTCAATATCCAATAACCTTATTTT
196 CCTTAAACCGTTCTTTCTTGTCAATCCTCATTTTCTCTTGCTTCAATATCCAATAACCCTATTTT
* *
39659069 CCATGGCAAAATTCTCTTTTGAAATGTTGGGGAAAATGACCCTTGGTACTA
261 CCATGGCAAAATTCTCTTTTGAAATGTTAGGGAAAACGACCCTTGGTACTA
39659120 CATCTAACAA
Statistics
Matches: 292, Mismatches: 18, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
316 290 0.99
317 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (316 bp):
TTGAAGAGAAGTAAATGGCGGAATTGGTGTTGACGGTTCAGAAAAGCTTGCAGATAAGTTTTGTA
GAATGAAAGAGGAAAAATAAAAATGCTTTGGAGGGAACCCTAAAATGACCTAGCCCTAAAGCAAC
ACGTTTGGCATTTTCTTCATGGGCTACCTAATTAGCAGAATGGGCCCAACTGTCCAAAATATTTT
CCTTAAACCGTTCTTTCTTGTCAATCCTCATTTTCTCTTGCTTCAATATCCAATAACCCTATTTT
CCATGGCAAAATTCTCTTTTGAAATGTTAGGGAAAACGACCCTTGGTACTAAATCA
Found at i:39668180 original size:22 final size:25
Alignment explanation
Indices: 39668139--39668183 Score: 69
Period size: 22 Copynumber: 1.9 Consensus size: 25
39668129 AATCGAAAAC
39668139 ATTAAACAACATAATATTTAAATAA
1 ATTAAACAACATAATATTTAAATAA
39668164 ATTAAAC-ACAT-AT-TTTAAAT
1 ATTAAACAACATAATATTTAAAT
39668184 CATTCAATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 7 0.35
23 2 0.10
24 4 0.20
25 7 0.35
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.36
Consensus pattern (25 bp):
ATTAAACAACATAATATTTAAATAA
Found at i:39698331 original size:21 final size:21
Alignment explanation
Indices: 39698292--39698331 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
39698282 TCAGCACACT
*
39698292 CAGATGCATCAATAACAAAGC
1 CAGATGCATCAACAACAAAGC
* *
39698313 CAGATGCATCCACACCAAA
1 CAGATGCATCAACAACAAA
39698332 ATTAGATGTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.30, G:0.12, T:0.12
Consensus pattern (21 bp):
CAGATGCATCAACAACAAAGC
Found at i:39713222 original size:32 final size:32
Alignment explanation
Indices: 39713178--39713258 Score: 90
Period size: 32 Copynumber: 2.5 Consensus size: 32
39713168 TCCATTCCAG
* * *
39713178 TAAGTATATTTGTTAAGTGAGAACTGTGTTCA
1 TAAGTATGTTTGTTAAGTGAGAACAGAGTTCA
* *
39713210 TAAGTATGTTTGTTAAATGCGAACAGAGTTCA
1 TAAGTATGTTTGTTAAGTGAGAACAGAGTTCA
* * *
39713242 CAAGTTTGTATGTTAAG
1 TAAGTATGTTTGTTAAG
39713259 GTTAGGATAT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.32, C:0.07, G:0.22, T:0.38
Consensus pattern (32 bp):
TAAGTATGTTTGTTAAGTGAGAACAGAGTTCA
Found at i:39715244 original size:31 final size:31
Alignment explanation
Indices: 39715206--39715266 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
39715196 GGCAAATTAA
39715206 AAGAGTAATTGAATCCTAATAAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTC
39715237 AAGAGTAATTGAATCCTAATAAAACTCTTT
1 AAGAGTAATTGAATCCTAATAAAACTCTTT
39715267 AAAATTATCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.33
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTC
Found at i:39723008 original size:19 final size:19
Alignment explanation
Indices: 39722980--39723018 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
39722970 TTTATGGTTT
39722980 TAAATAATTTTTGGGTAAAA
1 TAAATAA-TTTTGGGTAAAA
*
39723000 TAAAT-ATTTTGGGTTAAA
1 TAAATAATTTTGGGTAAAA
39723018 T
1 T
39723019 TGGAATTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 12 0.67
19 1 0.06
20 5 0.28
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (19 bp):
TAAATAATTTTGGGTAAAA
Found at i:39736382 original size:11 final size:11
Alignment explanation
Indices: 39736366--39736390 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
39736356 GGGATTGATT
39736366 TTTATTCTCTA
1 TTTATTCTCTA
39736377 TTTATTCTCTA
1 TTTATTCTCTA
39736388 TTT
1 TTT
39736391 TCTGTAAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTATTCTCTA
Found at i:39737548 original size:19 final size:20
Alignment explanation
Indices: 39737509--39737551 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
39737499 TAATAATAAT
* *
39737509 ATATTTTTTAATTGTTATCA
1 ATATGTTTTAAATGTTATCA
39737529 ATATGTTTTAAATG-TATCA
1 ATATGTTTTAAATGTTATCA
39737548 ATAT
1 ATAT
39737552 TATTTAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (20 bp):
ATATGTTTTAAATGTTATCA
Found at i:39737557 original size:19 final size:19
Alignment explanation
Indices: 39737513--39737559 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
39737503 AATAATATAT
*
39737513 TTTTTAATTGTTATCAATA
1 TTTTTAAATGTTATCAATA
39737532 TGTTTTAAATG-TATCAATA
1 T-TTTTAAATGTTATCAATA
39737551 TTATTTAAA
1 TT-TTTAAA
39737560 AAATACATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 1 0.04
19 16 0.64
20 8 0.32
ACGTcount: A:0.36, C:0.04, G:0.06, T:0.53
Consensus pattern (19 bp):
TTTTTAAATGTTATCAATA
Found at i:39745347 original size:37 final size:37
Alignment explanation
Indices: 39745297--39745375 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
39745287 TTATTACGAA
* * *
39745297 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
39745334 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
39745371 GTCTT
1 GTCTT
39745376 TAGAGCTCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:39745571 original size:47 final size:47
Alignment explanation
Indices: 39745493--39745974 Score: 752
Period size: 47 Copynumber: 10.2 Consensus size: 47
39745483 CCCTTCGGGA
* * * * * *
39745493 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
39745540 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
39745587 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
39745634 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
39745683 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
39745730 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
39745775 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
39745824 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
39745871 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
39745919 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
39745966 CTTATCACA
1 CTTATCACA
39745975 ATTTAGAATT
Statistics
Matches: 403, Mismatches: 25, Indels: 14
0.91 0.06 0.03
Matches are distributed among these distances:
45 44 0.11
47 225 0.56
48 46 0.11
49 88 0.22
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:39745688 original size:96 final size:94
Alignment explanation
Indices: 39745493--39745974 Score: 743
Period size: 96 Copynumber: 5.1 Consensus size: 94
39745483 CCCTTCGGGA
** * * * * * * *
39745493 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
39745558 TTTCACATTCATCACATCGGCCATTAAGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
39745587 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
39745652 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
39745683 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
39745746 TTTCACATTCATCACATCGGCCATTAAGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
39745775 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACACATAT--ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
39745840 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
39745871 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTA-TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
39745936 CTTTCACATTCATCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
39745966 CTTATCACA
1 CTTATCACA
39745975 ATTTAGAATT
Statistics
Matches: 358, Mismatches: 23, Indels: 14
0.91 0.06 0.04
Matches are distributed among these distances:
92 47 0.13
94 90 0.25
95 83 0.23
96 128 0.36
97 10 0.03
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (94 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:39745717 original size:23 final size:23
Alignment explanation
Indices: 39745690--39745762 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
39745680 GGCCTTATCG
39745690 CACATATACACTTTCACATTCAT
1 CACATATACACTTTCACATTCAT
*** * *
39745713 CACATCGGC-CATT-AGGCCTT-AT
1 CACATATACACTTTCA--CATTCAT
39745735 CACATATACACTTTCACATTCAT
1 CACATATACACTTTCACATTCAT
39745758 CACAT
1 CACAT
39745763 CGGCCATTAA
Statistics
Matches: 35, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
21 1 0.03
22 14 0.40
23 19 0.54
24 1 0.03
ACGTcount: A:0.32, C:0.32, G:0.05, T:0.32
Consensus pattern (23 bp):
CACATATACACTTTCACATTCAT
Found at i:39745784 original size:22 final size:22
Alignment explanation
Indices: 39745711--39745784 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
39745701 TTTCACATTC
*
39745711 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAAGCCTT
*** * * *
39745733 ATCACATATACACTTTCA-CATT
1 ATCACATCGGC-CATTAAGCCTT
39745755 CATCACATCGGCCATTAAGCCTT
1 -ATCACATCGGCCATTAAGCCTT
39745778 ATCACAT
1 ATCACAT
39745785 ATATACACAC
Statistics
Matches: 36, Mismatches: 13, Indels: 6
0.65 0.24 0.11
Matches are distributed among these distances:
22 22 0.61
23 14 0.39
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (22 bp):
ATCACATCGGCCATTAAGCCTT
Found at i:39752501 original size:44 final size:45
Alignment explanation
Indices: 39752448--39752799 Score: 180
Period size: 44 Copynumber: 7.5 Consensus size: 45
39752438 TGAACCTAGT
* * *
39752448 AATCCTATCTCCCTAAGATTACAATGGAGCGGATTAAAACAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCGGATTAAAACAAAGA
* * * * * *
39752492 GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATCAGATCGAAGCCAGA
1 AATCTTATCTCCCTGAGA-TTACAGT-G-G-AG--CGGATTAAAAC-AA---AGA
* * * * * *
39752546 AATCTTATCTTCCTGAGATTACAGTGGAGCAGATTGAAGC-TAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCGGATTAAAACAAAGA
*
39752590 AATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAACAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCGGATTAAAACAAAGA
* * * * * *
39752634 GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATCAGATCGAAGCCAGA
1 AATCTTATCTCCCTGAGA-TTACAGT-G-G-AG--CGGATTAAAAC-AA---AGA
* * * * * *
39752688 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC-TAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCGGATTAAAACAAAGA
*
39752732 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAACAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCGGATTAAAACAAAGA
* *
39752776 GATCTTATCTCTCTGA-AGTTACAG
1 AATCTTATCTCCCTGAGA-TTACAG
39752800 CAAGTAGATC
Statistics
Matches: 231, Mismatches: 50, Indels: 54
0.69 0.15 0.16
Matches are distributed among these distances:
43 3 0.01
44 134 0.58
45 6 0.03
46 2 0.01
47 4 0.02
49 24 0.10
50 4 0.02
51 4 0.02
52 2 0.01
53 6 0.03
54 40 0.17
55 2 0.01
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (45 bp):
AATCTTATCTCCCTGAGATTACAGTGGAGCGGATTAAAACAAAGA
Found at i:39752754 original size:98 final size:98
Alignment explanation
Indices: 39752575--39752765 Score: 233
Period size: 98 Copynumber: 1.9 Consensus size: 98
39752565 TACAGTGGAG
* * * * * *
39752575 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAACAAAGGATCTT
1 CAGATCGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTAAAACAAAGAATCTT
* *
39752640 ATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
66 ATCTCCCTGAAGTTACAGTAGAGCAGATCGCAT
* * * *
39752673 CAGATCGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC-TAGTAATCT
1 CAGATCGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTAAAACAAAG-AATCT
*
39752737 TATCTCCCTG-AGATTACAGTGGAGCAGAT
65 TATCTCCCTGAAG-TTACAGTAGAGCAGAT
39752766 TAAAACAAAG
Statistics
Matches: 78, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
97 4 0.05
98 74 0.95
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (98 bp):
CAGATCGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTAAAACAAAGAATCTT
ATCTCCCTGAAGTTACAGTAGAGCAGATCGCAT
Found at i:39752840 original size:142 final size:142
Alignment explanation
Indices: 39752395--39752818 Score: 715
Period size: 142 Copynumber: 3.0 Consensus size: 142
39752385 GGGGCAGACT
* * * * * * *
39752395 GAAGCCAAAAATCCTAGCTCCCTGAGATTATAGCAGAGTAGATTGAACCTAGTAATCCTATCTCC
1 GAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCC
* *
39752460 CTAAGATTACAATGGAGCGGATTAAAACAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA
66 CTGAGATTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA
39752525 TCGCATCAGATC
131 TCGCATCAGATC
* *
39752537 GAAGCCAGAAATCTTATCTTCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTATCTCC
1 GAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCC
39752602 CTGAGATTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA
66 CTGAGATTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA
39752667 TCGCATCAGATC
131 TCGCATCAGATC
*
39752679 GAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCTTATCTCC
1 GAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCC
* *
39752744 CTGAGATTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCTCTGAAGTTACAGCA-AGTAGA
66 CTGAGATTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA
39752808 TCGCATCAGAT
131 TCGCATCAGAT
39752819 TGGAGCTACA
Statistics
Matches: 266, Mismatches: 16, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
141 17 0.06
142 249 0.94
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.26
Consensus pattern (142 bp):
GAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCC
CTGAGATTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA
TCGCATCAGATC
Found at i:39753246 original size:18 final size:17
Alignment explanation
Indices: 39753214--39753247 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
39753204 AAACCCAACT
39753214 AGCCCAAATGCCCATTC
1 AGCCCAAATGCCCATTC
*
39753231 AGCCCAATTAGCCCATT
1 AGCCCAAAT-GCCCATT
39753248 TTGAAAGAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.29, C:0.38, G:0.12, T:0.21
Consensus pattern (17 bp):
AGCCCAAATGCCCATTC
Found at i:39754674 original size:19 final size:20
Alignment explanation
Indices: 39754635--39754677 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
39754625 TAATAATAAT
* *
39754635 ATATTTTTTAATTGCTATCA
1 ATATGTTTTAAATGCTATCA
39754655 ATATGTTTTAAATG-TATCA
1 ATATGTTTTAAATGCTATCA
39754674 ATAT
1 ATAT
39754678 TATTTAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.35, C:0.07, G:0.07, T:0.51
Consensus pattern (20 bp):
ATATGTTTTAAATGCTATCA
Found at i:39754683 original size:19 final size:19
Alignment explanation
Indices: 39754639--39754685 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
39754629 AATAATATAT
*
39754639 TTTTTAATTGCTATCAATA
1 TTTTTAAATGCTATCAATA
39754658 TGTTTTAAATG-TATCAATA
1 T-TTTTAAATGCTATCAATA
39754677 TTATTTAAA
1 TT-TTTAAA
39754686 AAATACATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 1 0.04
19 16 0.64
20 8 0.32
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.51
Consensus pattern (19 bp):
TTTTTAAATGCTATCAATA
Found at i:39760426 original size:27 final size:27
Alignment explanation
Indices: 39760417--39760626 Score: 224
Period size: 27 Copynumber: 7.8 Consensus size: 27
39760407 CACAAAGACA
*
39760417 TCATTATCATGGATCGCCACAAAAGCT
1 TCATTATCATAGATCGCCACAAAAGCT
* * * *
39760444 TCCTTTTCATAGATTGCCACAAAAGCA
1 TCATTATCATAGATCGCCACAAAAGCT
* *
39760471 TCATTATCATGGATCGCCACGAAAGCT
1 TCATTATCATAGATCGCCACAAAAGCT
*
39760498 TCATTTTCATAGATCGCCACAAAAGCT
1 TCATTATCATAGATCGCCACAAAAGCT
* **
39760525 TCCTTATCATAGATCATCACAAAAGCTT
1 TCATTATCATAGATCGCCACAAAAGC-T
* *
39760553 TC-TTATCATAGATCGCCACCAAGGCT
1 TCATTATCATAGATCGCCACAAAAGCT
* * * *
39760579 TCCTTTTCATAGATCGCCACCAAGGCT
1 TCATTATCATAGATCGCCACAAAAGCT
* * *
39760606 TCCTTTTCATAGATCACCACA
1 TCATTATCATAGATCGCCACA
39760627 TGTCGCATGT
Statistics
Matches: 156, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 3 0.02
27 150 0.96
28 3 0.02
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.29
Consensus pattern (27 bp):
TCATTATCATAGATCGCCACAAAAGCT
Found at i:39760454 original size:54 final size:54
Alignment explanation
Indices: 39760395--39760626 Score: 259
Period size: 54 Copynumber: 4.3 Consensus size: 54
39760385 TGGCATTCCC
** *
39760395 TTCATAGATTACCAC-AAAGACATCATTATCATGGATCGCCACAAAAGCTTCCTT
1 TTCATAGATCGCCACAAAAG-CATCATTATCATAGATCGCCACAAAAGCTTCCTT
* * * *
39760449 TTCATAGATTGCCACAAAAGCATCATTATCATGGATCGCCACGAAAGCTTCATT
1 TTCATAGATCGCCACAAAAGCATCATTATCATAGATCGCCACAAAAGCTTCCTT
* * ** *
39760503 TTCATAGATCGCCACAAAAGCTTCCTTATCATAGATCATCACAAAAGCTTTCTT
1 TTCATAGATCGCCACAAAAGCATCATTATCATAGATCGCCACAAAAGCTTCCTT
* * * * * * * *
39760557 ATCATAGATCGCCACCAAGGCTTCCTTTTCATAGATCGCCACCAAGGCTTCCTT
1 TTCATAGATCGCCACAAAAGCATCATTATCATAGATCGCCACAAAAGCTTCCTT
*
39760611 TTCATAGATCACCACA
1 TTCATAGATCGCCACA
39760627 TGTCGCATGT
Statistics
Matches: 153, Mismatches: 24, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
54 149 0.97
55 4 0.03
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.28
Consensus pattern (54 bp):
TTCATAGATCGCCACAAAAGCATCATTATCATAGATCGCCACAAAAGCTTCCTT
Found at i:39760559 original size:81 final size:81
Alignment explanation
Indices: 39760417--39760626 Score: 287
Period size: 81 Copynumber: 2.6 Consensus size: 81
39760407 CACAAAGACA
* * ** *
39760417 TCATTATCATGGATCGCCACAAAAGCTTCCTTTTCATAGATTGCCACAAAAGCATCATTATCATG
1 TCATTTTCATAGATCGCCACAAAAGCTTCCTTTTCATAGATCACCACAAAAGCATCATTATCATA
*
39760482 GATCGCCACGAAAGCT
66 GATCGCCACCAAAGCT
* * *
39760498 TCATTTTCATAGATCGCCACAAAAGCTTCCTTATCATAGATCATCACAAAAGCTTTC-TTATCAT
1 TCATTTTCATAGATCGCCACAAAAGCTTCCTTTTCATAGATCACCACAAAAGC-ATCATTATCAT
*
39760562 AGATCGCCACCAAGGCT
65 AGATCGCCACCAAAGCT
* * *
39760579 TCCTTTTCATAGATCGCCACCAAGGCTTCCTTTTCATAGATCACCACA
1 TCATTTTCATAGATCGCCACAAAAGCTTCCTTTTCATAGATCACCACA
39760627 TGTCGCATGT
Statistics
Matches: 113, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
81 111 0.98
82 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.29
Consensus pattern (81 bp):
TCATTTTCATAGATCGCCACAAAAGCTTCCTTTTCATAGATCACCACAAAAGCATCATTATCATA
GATCGCCACCAAAGCT
Found at i:39764898 original size:17 final size:16
Alignment explanation
Indices: 39764861--39764903 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
39764851 GAAAAATTAT
39764861 GTTTTTCATCCCTCTA
1 GTTTTTCATCCCTCTA
* *
39764877 GTTTTTTATCCCTTTA
1 GTTTTTCATCCCTCTA
39764893 GTTTTTCATCC
1 GTTTTTCATCC
39764904 TTTCAATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.12, C:0.26, G:0.07, T:0.56
Consensus pattern (16 bp):
GTTTTTCATCCCTCTA
Found at i:39766136 original size:24 final size:24
Alignment explanation
Indices: 39766109--39766160 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
39766099 TGAAGTGGAT
39766109 TCAAATATTTGTGATATTCAATTA
1 TCAAATATTTGTGATATTCAATTA
39766133 TCAAATATTTGTGATATTCAATTA
1 TCAAATATTTGTGATATTCAATTA
39766157 TCAA
1 TCAA
39766161 TTTACAGAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (24 bp):
TCAAATATTTGTGATATTCAATTA
Found at i:39769064 original size:17 final size:17
Alignment explanation
Indices: 39769042--39769082 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
39769032 ACATCAAAAG
39769042 GAAAGATACA-TGAACTT
1 GAAAGATACATTGAA-TT
*
39769059 GGAAGATACATTGAATT
1 GAAAGATACATTGAATT
39769076 GAAAGAT
1 GAAAGAT
39769083 TTATGTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 17 0.81
18 4 0.19
ACGTcount: A:0.46, C:0.07, G:0.22, T:0.24
Consensus pattern (17 bp):
GAAAGATACATTGAATT
Found at i:39786898 original size:31 final size:32
Alignment explanation
Indices: 39786855--39786927 Score: 103
Period size: 32 Copynumber: 2.3 Consensus size: 32
39786845 TTTCATTTTT
* *
39786855 TAAAATTTTTA-TTCTGAAATATGTTTTTATA
1 TAAATTTTTTATTTCTGAAATATGTTTTTACA
* *
39786886 TAAATTTTTTATTTTTTAAATATGTTTTTACA
1 TAAATTTTTTATTTCTGAAATATGTTTTTACA
39786918 TAAATTTTTT
1 TAAATTTTTT
39786928 CATCATGTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
31 10 0.27
32 27 0.73
ACGTcount: A:0.33, C:0.03, G:0.04, T:0.60
Consensus pattern (32 bp):
TAAATTTTTTATTTCTGAAATATGTTTTTACA
Found at i:39786921 original size:16 final size:16
Alignment explanation
Indices: 39786871--39786922 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
39786861 TTTTATTCTG
39786871 AAATATGTTTTTATAT
1 AAATATGTTTTTATAT
* * *
39786887 AAAT-TTTTTATTTTTT
1 AAATATGTTT-TTATAT
*
39786903 AAATATGTTTTTACAT
1 AAATATGTTTTTATAT
39786919 AAAT
1 AAAT
39786923 TTTTTCATCA
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
15 4 0.15
16 19 0.70
17 4 0.15
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.58
Consensus pattern (16 bp):
AAATATGTTTTTATAT
Found at i:39787754 original size:20 final size:20
Alignment explanation
Indices: 39787729--39787768 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
39787719 TCATATTATT
39787729 GTGGTTTTGTCCACAATTTC
1 GTGGTTTTGTCCACAATTTC
39787749 GTGGTTTTGTCCACAATTTC
1 GTGGTTTTGTCCACAATTTC
39787769 ATAGTTTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.15, C:0.20, G:0.20, T:0.45
Consensus pattern (20 bp):
GTGGTTTTGTCCACAATTTC
Done.