Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 135 of 240
Found at i:41923004 original size:47 final size:47
Alignment explanation
Indices: 41922926--41923270 Score: 539
Period size: 47 Copynumber: 7.3 Consensus size: 47
41922916 CCCTTCGGGA
* * * * * *
41922926 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
41922973 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
41923020 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
41923067 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
41923114 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
41923163 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
41923210 CTTATCACATATATACACTTTCACATTCATCACATC-GTCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
41923256 CTTATCACATGTATA
1 CTTATCACATATATA
41923271 TACCAACTTA
Statistics
Matches: 276, Mismatches: 20, Indels: 5
0.92 0.07 0.02
Matches are distributed among these distances:
46 23 0.08
47 208 0.75
49 45 0.16
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:41923182 original size:143 final size:143
Alignment explanation
Indices: 41922926--41923273 Score: 549
Period size: 143 Copynumber: 2.5 Consensus size: 143
41922916 CCCTTCGGGA
* * * * * * * *
41922926 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
41922989 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
*
41923054 TCGGCTATTAGGC
131 TCGGCCATTAGGC
41923067 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * *
41923132 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
41923197 TCGGCCATTAGGC
131 TCGGCCATTAGGC
* *
41923210 CTTATCACATATATACACTTTCACATTCATCACATC-GTCATTAGGCCTTATCACATGTATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
41923274 CAACTTAACT
Statistics
Matches: 191, Mismatches: 14, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
141 47 0.25
142 26 0.14
143 118 0.62
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:41924141 original size:19 final size:20
Alignment explanation
Indices: 41924115--41924155 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
41924105 TTTTTAAACA
41924115 ATTTTTTTACAAATCTACTT
1 ATTTTTTTACAAATCTACTT
41924135 ATTTTTTTACAAATCTACTT
1 ATTTTTTTACAAATCTACTT
41924155 A
1 A
41924156 CTCCGGCTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.15, G:0.00, T:0.54
Consensus pattern (20 bp):
ATTTTTTTACAAATCTACTT
Found at i:41931633 original size:161 final size:161
Alignment explanation
Indices: 41931449--41931757 Score: 451
Period size: 161 Copynumber: 1.9 Consensus size: 161
41931439 TTGGACCAAG
* *
41931449 ATTTCCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATAGCTTC-AAACAACAAAATTGGG
1 ATTTCCAAGATTTGAAATCTTGATTTTCTTGACTCTTGAAATAGC-TCAAAACAACAAAATTGGA
* * *
41931513 CCAAGATTCGGTTTCCTGATTTTCTTGAAAATAAGAAAGTGAATCTTGATCTTCTCTTT-CTTTC
65 CAAAGATTCGGTTTCCTGAATTTCTTGAAAACAAGAAAGTGAATCTTGATCTTCTCTTTCCTTT-
*
41931577 GCGTACGCATCTAAGGCCTTTGTGACTCGTATC
129 GCATACGCATCTAAGGCCTTTGTGACTCGTATC
* ** *
41931610 ATTTCCAAGATTTGAAATCTTGATTTTCTTGACTCTTGAAATCGCTCAAAACAGTAAGATTGGAC
1 ATTTCCAAGATTTGAAATCTTGATTTTCTTGACTCTTGAAATAGCTCAAAACAACAAAATTGGAC
* * * * *
41931675 AAAGATTCGGTTTCTTGAATTTCTTGAAAACAAGATAGTGAATCTTGATTTTCTTTTTCCTTTGT
66 AAAGATTCGGTTTCCTGAATTTCTTGAAAACAAGAAAGTGAATCTTGATCTTCTCTTTCCTTTGC
41931740 ATACGCATCTAAGGCCTT
131 ATACGCATCTAAGGCCTT
41931758 GCTAATGAAG
Statistics
Matches: 131, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
160 2 0.02
161 125 0.95
162 4 0.03
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (161 bp):
ATTTCCAAGATTTGAAATCTTGATTTTCTTGACTCTTGAAATAGCTCAAAACAACAAAATTGGAC
AAAGATTCGGTTTCCTGAATTTCTTGAAAACAAGAAAGTGAATCTTGATCTTCTCTTTCCTTTGC
ATACGCATCTAAGGCCTTTGTGACTCGTATC
Found at i:41943516 original size:20 final size:21
Alignment explanation
Indices: 41943493--41943537 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
41943483 AGCTTGTTTT
*
41943493 AGCTCCAA-CCAGCTCATTTG
1 AGCTCCAATCCAGCTCATTCG
*
41943513 AGCT-CAATTCAGCTCATTCG
1 AGCTCCAATCCAGCTCATTCG
41943533 AGCTC
1 AGCTC
41943538 AATTTAGCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
19 3 0.14
20 18 0.86
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (21 bp):
AGCTCCAATCCAGCTCATTCG
Found at i:41943538 original size:20 final size:20
Alignment explanation
Indices: 41943502--41943546 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
41943492 TAGCTCCAAC
*
41943502 CAGCTCATTTGAGCTCAATT
1 CAGCTCATTCGAGCTCAATT
41943522 CAGCTCATTCGAGCTCAATT
1 CAGCTCATTCGAGCTCAATT
*
41943542 TAGCT
1 CAGCT
41943547 TTCCATCAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.24, C:0.27, G:0.16, T:0.33
Consensus pattern (20 bp):
CAGCTCATTCGAGCTCAATT
Found at i:41943728 original size:22 final size:22
Alignment explanation
Indices: 41943685--41943733 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
41943675 ATCTAGCCGC
*
41943685 ATTTATTGTTAATTAT-ATTTT
1 ATTTATTGTTAATTATAATTTA
* *
41943706 ATTTATGTGTTTATTTTAATTTA
1 ATTTAT-TGTTAATTATAATTTA
41943729 ATTTA
1 ATTTA
41943734 ATATGTCTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 6 0.26
22 8 0.35
23 9 0.39
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (22 bp):
ATTTATTGTTAATTATAATTTA
Found at i:41959465 original size:28 final size:27
Alignment explanation
Indices: 41959408--41959559 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
41959398 TAAATTGTGC
* *
41959408 AGCACTAAGTGTGCGAATTGACCATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
41959435 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
41959463 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
41959490 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
41959518 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
41959545 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
41959560 GACTTAATAT
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:41959470 original size:55 final size:55
Alignment explanation
Indices: 41959408--41959559 Score: 250
Period size: 55 Copynumber: 2.8 Consensus size: 55
41959398 TAAATTGTGC
* *
41959408 AGCACTAAGTGTGCGAATTGACCATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
41959463 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
41959518 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
41959560 GACTTAATAT
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 91 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:41972346 original size:21 final size:20
Alignment explanation
Indices: 41972315--41972354 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
41972305 TCACTCTCTT
41972315 TTTCGATTTCTTGTTCTTTTTC
1 TTTCGATTTCTT-TT-TTTTTC
41972337 TTTC-ATTTCTTTTTTTTT
1 TTTCGATTTCTTTTTTTTT
41972355 GTCTCTCGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.28
20 2 0.11
21 7 0.39
22 4 0.22
ACGTcount: A:0.05, C:0.15, G:0.05, T:0.75
Consensus pattern (20 bp):
TTTCGATTTCTTTTTTTTTC
Found at i:41975388 original size:20 final size:20
Alignment explanation
Indices: 41975342--41975390 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
41975332 TTTTCCCTTG
*
41975342 CTCTTTTTTTCCCACAATCT
1 CTCTTCTTTTCCCACAATCT
** * *
41975362 CGATTCTTTTCTCTCAATCT
1 CTCTTCTTTTCCCACAATCT
41975382 CTCTTCTTT
1 CTCTTCTTT
41975391 CTTTTCTTTT
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.12, C:0.33, G:0.02, T:0.53
Consensus pattern (20 bp):
CTCTTCTTTTCCCACAATCT
Found at i:41977563 original size:20 final size:18
Alignment explanation
Indices: 41977538--41977576 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
41977528 TTTTTTTCTT
41977538 TTTTTTTACATACTTCGAAA
1 TTTTTTTACA-ACTTC-AAA
*
41977558 TTTTTTTTCAACTTCAAA
1 TTTTTTTACAACTTCAAA
41977576 T
1 T
41977577 ACGAATCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 5 0.28
20 9 0.50
ACGTcount: A:0.28, C:0.15, G:0.03, T:0.54
Consensus pattern (18 bp):
TTTTTTTACAACTTCAAA
Found at i:41977571 original size:19 final size:20
Alignment explanation
Indices: 41977537--41977576 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
41977527 CTTTTTTTCT
41977537 TTTTTTTTACATACTTCGAAA
1 TTTTTTTTACATACTTC-AAA
41977558 TTTTTTTT-CA-ACTTCAAA
1 TTTTTTTTACATACTTCAAA
41977576 T
1 T
41977577 ACGAATCCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.21
19 5 0.26
20 2 0.11
21 8 0.42
ACGTcount: A:0.28, C:0.15, G:0.03, T:0.55
Consensus pattern (20 bp):
TTTTTTTTACATACTTCAAA
Found at i:41977655 original size:18 final size:17
Alignment explanation
Indices: 41977615--41977646 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
41977605 AATCCACGAC
41977615 TTTTTT-TTCTTTTTTG
1 TTTTTTATTCTTTTTTG
41977631 TTTTTTATT-TTTTTTG
1 TTTTTTATTCTTTTTTG
41977647 AATTTTTTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 13 0.87
17 2 0.13
ACGTcount: A:0.03, C:0.03, G:0.06, T:0.88
Consensus pattern (17 bp):
TTTTTTATTCTTTTTTG
Found at i:41978494 original size:30 final size:30
Alignment explanation
Indices: 41978446--41978517 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 30
41978436 ATGTGCATAT
** *
41978446 GGAGCTGAATTAAAGCATGAATGTGTTTAA
1 GGAGCTGAATGGAAGCATGAATGTATTTAA
* * *
41978476 GGAGCTGAATGGAGGCATGCATGTATTTAG
1 GGAGCTGAATGGAAGCATGAATGTATTTAA
41978506 GGAGCTGAATGG
1 GGAGCTGAATGG
41978518 GGAAGCTAGA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.31, C:0.08, G:0.35, T:0.26
Consensus pattern (30 bp):
GGAGCTGAATGGAAGCATGAATGTATTTAA
Found at i:41979920 original size:10 final size:10
Alignment explanation
Indices: 41979907--41979932 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
41979897 TTTAATTTCT
41979907 TTTTTTCAAA
1 TTTTTTCAAA
41979917 TTTTTTCAAA
1 TTTTTTCAAA
41979927 TTTTTT
1 TTTTTT
41979933 TAAACACTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTTTTCAAA
Found at i:41983704 original size:18 final size:20
Alignment explanation
Indices: 41983683--41983732 Score: 68
Period size: 18 Copynumber: 2.5 Consensus size: 20
41983673 AAAGAAAGAT
41983683 AGAAAAAGA-AATCAAAAA-
1 AGAAAAAGAGAATCAAAAAG
*
41983701 AGAAAAAGAGAATGAAAAAG
1 AGAAAAAGAGAATCAAAAAG
41983721 AGAAAAAAGAGA
1 AG-AAAAAGAGA
41983733 TTCAGAGTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 9 0.32
19 8 0.29
20 2 0.07
21 9 0.32
ACGTcount: A:0.74, C:0.02, G:0.20, T:0.04
Consensus pattern (20 bp):
AGAAAAAGAGAATCAAAAAG
Found at i:41994045 original size:16 final size:16
Alignment explanation
Indices: 41994026--41994064 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
41994016 GGGGAAAAGA
41994026 AAAGAAA-AGAAAAATT
1 AAAGAAACA-AAAAATT
*
41994042 AAAGAAACAAACAATT
1 AAAGAAACAAAAAATT
41994058 AAAGAAA
1 AAAGAAA
41994065 GATATAGGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 20 0.95
17 1 0.05
ACGTcount: A:0.74, C:0.05, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAGAAACAAAAAATT
Found at i:41997087 original size:37 final size:37
Alignment explanation
Indices: 41997037--41997110 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
41997027 TCGAGAAAGA
41997037 TTGCACAACTCCCTTCAAACGGCTCTAATCTCCCCTC
1 TTGCACAACTCCCTTCAAACGGCTCTAATCTCCCCTC
41997074 TTGCACAACTCCCTTCAAACGGCTCTAATCTCCCCTC
1 TTGCACAACTCCCTTCAAACGGCTCTAATCTCCCCTC
41997111 CAATGACGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.22, C:0.43, G:0.08, T:0.27
Consensus pattern (37 bp):
TTGCACAACTCCCTTCAAACGGCTCTAATCTCCCCTC
Found at i:41999332 original size:18 final size:17
Alignment explanation
Indices: 41999309--41999347 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
41999299 CTCTTTTTGC
41999309 TCTTTTTCATTCTCTTTT
1 TCTTTTTCATT-TCTTTT
*
41999327 TCTTTTTTGATTTCTTTT
1 TC-TTTTTCATTTCTTTT
41999345 TCT
1 TCT
41999348 GTCTTCCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 1 0.05
18 10 0.53
19 8 0.42
ACGTcount: A:0.05, C:0.18, G:0.03, T:0.74
Consensus pattern (17 bp):
TCTTTTTCATTTCTTTT
Found at i:42002288 original size:25 final size:23
Alignment explanation
Indices: 42002233--42002285 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
42002223 TAATATTTGT
*
42002233 TTTTAATATGTCTAGCTACAGCA
1 TTTTAATATGTCTAGCTACAACA
42002256 TTTTAATATGTCTTTAGCTA-AACA
1 TTTTAATATGTC--TAGCTACAACA
42002280 TTTTAA
1 TTTTAA
42002286 ATACACGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 12 0.44
24 9 0.33
25 6 0.22
ACGTcount: A:0.32, C:0.13, G:0.09, T:0.45
Consensus pattern (23 bp):
TTTTAATATGTCTAGCTACAACA
Found at i:42003602 original size:14 final size:13
Alignment explanation
Indices: 42003583--42003628 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
42003573 GTAAGTGTTT
*
42003583 AAAAAAATTTGAA
1 AAAAAAAATTGAA
42003596 AAAAAAAATTGAA
1 AAAAAAAATTGAA
*
42003609 AAAAAGAAATTCAA
1 AAAAA-AAATTGAA
42003623 AAAAAA
1 AAAAAA
42003629 TCCCAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 18 0.60
14 12 0.40
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.15
Consensus pattern (13 bp):
AAAAAAAATTGAA
Found at i:42006837 original size:45 final size:45
Alignment explanation
Indices: 42006788--42006885 Score: 178
Period size: 45 Copynumber: 2.2 Consensus size: 45
42006778 CGAAAAAAAA
* *
42006788 GAAAAAAATTGAGAATAAAAAAAGAGTATGAAGTAAAAAAAATTC
1 GAAAAAAATTGAGAATAAAAAAAGAGCACGAAGTAAAAAAAATTC
42006833 GAAAAAAATTGAGAATAAAAAAAGAGCACGAAGTAAAAAAAATTC
1 GAAAAAAATTGAGAATAAAAAAAGAGCACGAAGTAAAAAAAATTC
42006878 GAAAAAAA
1 GAAAAAAA
42006886 AGTGAAGTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.66, C:0.04, G:0.15, T:0.14
Consensus pattern (45 bp):
GAAAAAAATTGAGAATAAAAAAAGAGCACGAAGTAAAAAAAATTC
Found at i:42007813 original size:12 final size:12
Alignment explanation
Indices: 42007784--42007823 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
42007774 AAACAGCATG
42007784 TGAAAAAGAAAA
1 TGAAAAAGAAAA
** *
42007796 ACAAAAAGAAAT
1 TGAAAAAGAAAA
42007808 TGAAAAAGAAAA
1 TGAAAAAGAAAA
42007820 TGAA
1 TGAA
42007824 CATGAACATG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.72, C:0.03, G:0.15, T:0.10
Consensus pattern (12 bp):
TGAAAAAGAAAA
Found at i:42007905 original size:33 final size:32
Alignment explanation
Indices: 42007858--42007919 Score: 88
Period size: 33 Copynumber: 1.9 Consensus size: 32
42007848 CAATAAATTG
*
42007858 AAAAATAAAATGAGAGTGAGATTGAGAAAAAGA
1 AAAAAGAAAATGAGAGTGAGATTGA-AAAAAGA
* *
42007891 AAAAAGAAATTGAGATTGAGATTGAAAAA
1 AAAAAGAAAATGAGAGTGAGATTGAAAAA
42007920 GGATGTGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 4 0.15
33 22 0.85
ACGTcount: A:0.60, C:0.00, G:0.23, T:0.18
Consensus pattern (32 bp):
AAAAAGAAAATGAGAGTGAGATTGAAAAAAGA
Found at i:42013790 original size:33 final size:34
Alignment explanation
Indices: 42013739--42013813 Score: 116
Period size: 33 Copynumber: 2.2 Consensus size: 34
42013729 AGATTTAAAC
*
42013739 AAATTAATTACTAACACTTATTTAAGGTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
42013773 AAATTAATT-CTAACACTTATTTGAGCTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
42013806 AATTTAAT
1 AAATTAAT
42013814 AAACTAACTC
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
33 29 0.76
34 9 0.24
ACGTcount: A:0.43, C:0.12, G:0.08, T:0.37
Consensus pattern (34 bp):
AAATTAATTACTAACACTTATTTAAGCTGAACTA
Found at i:42015595 original size:18 final size:17
Alignment explanation
Indices: 42015572--42015610 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
42015562 CTCTTTTTGC
42015572 TCTTTTTCATTCTCTTTT
1 TCTTTTTCATT-TCTTTT
*
42015590 TCTTTTTTGATTTCTTTT
1 TC-TTTTTCATTTCTTTT
42015608 TCT
1 TCT
42015611 GTCTTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 1 0.05
18 10 0.53
19 8 0.42
ACGTcount: A:0.05, C:0.18, G:0.03, T:0.74
Consensus pattern (17 bp):
TCTTTTTCATTTCTTTT
Found at i:42034674 original size:17 final size:17
Alignment explanation
Indices: 42034652--42034684 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
42034642 TGGAGGAAAT
42034652 AGACGTTTTTGGGGCAA
1 AGACGTTTTTGGGGCAA
42034669 AGACGTTTTTGGGGCA
1 AGACGTTTTTGGGGCA
42034685 GGGTCGTATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.12, G:0.36, T:0.30
Consensus pattern (17 bp):
AGACGTTTTTGGGGCAA
Found at i:42036427 original size:30 final size:28
Alignment explanation
Indices: 42036393--42036449 Score: 78
Period size: 30 Copynumber: 2.0 Consensus size: 28
42036383 TCACTCAACA
*
42036393 AAAATCTGAATTCAATGTAATGTCCTCAAT
1 AAAATCTCAATTCAATGT-AT-TCCTCAAT
*
42036423 AAAATCTCATTTCAATGTATTCCTCAA
1 AAAATCTCAATTCAATGTATTCCTCAA
42036450 GTGTAGTGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 7 0.28
29 2 0.08
30 16 0.64
ACGTcount: A:0.39, C:0.19, G:0.07, T:0.35
Consensus pattern (28 bp):
AAAATCTCAATTCAATGTATTCCTCAAT
Found at i:42040444 original size:18 final size:19
Alignment explanation
Indices: 42040423--42040459 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
42040413 AAAGGAAGAC
42040423 AGAAAAAGA-AATCAAAAA
1 AGAAAAAGAGAATCAAAAA
*
42040441 AGAAAAAGAGAATGAAAAA
1 AGAAAAAGAGAATCAAAAA
42040460 GAGCAAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.76, C:0.03, G:0.16, T:0.05
Consensus pattern (19 bp):
AGAAAAAGAGAATCAAAAA
Found at i:42042256 original size:33 final size:34
Alignment explanation
Indices: 42042219--42042290 Score: 101
Period size: 33 Copynumber: 2.1 Consensus size: 34
42042209 GAGTTAGTCT
*
42042219 ATTAAATCTAGTTCAGCTCAAATAAGTGTTAG-A
1 ATTAAATCTAGTTCAACTCAAATAAGTGTTAGTA
* * *
42042252 ATTAATTTTAGTTCAACTTAAATAAGTGTTAGTA
1 ATTAAATCTAGTTCAACTCAAATAAGTGTTAGTA
42042286 ATTAA
1 ATTAA
42042291 TTTGTTTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 28 0.82
34 6 0.18
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.39
Consensus pattern (34 bp):
ATTAAATCTAGTTCAACTCAAATAAGTGTTAGTA
Found at i:42044405 original size:18 final size:17
Alignment explanation
Indices: 42044382--42044420 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
42044372 CTCTTTTTGC
42044382 TCTTTTTCATTCTCTTTT
1 TCTTTTTCATT-TCTTTT
*
42044400 TCTTTTTTGATTTCTTTT
1 TC-TTTTTCATTTCTTTT
42044418 TCT
1 TCT
42044421 GTCTTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 1 0.05
18 10 0.53
19 8 0.42
ACGTcount: A:0.05, C:0.18, G:0.03, T:0.74
Consensus pattern (17 bp):
TCTTTTTCATTTCTTTT
Found at i:42053476 original size:16 final size:17
Alignment explanation
Indices: 42053444--42053476 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
42053434 CCATGTCCTC
42053444 CAACTCAACATAATGTTG
1 CAACTCAACA-AATGTTG
42053462 CAACTCAAC-AATGTT
1 CAACTCAACAAATGTT
42053477 AGAAATTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.27
Consensus pattern (17 bp):
CAACTCAACAAATGTTG
Found at i:42055700 original size:29 final size:29
Alignment explanation
Indices: 42055658--42055758 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
42055648 CATGAAATTG
42055658 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
*
42055687 GCACTAAGTGTGCGGGTTCAAGTTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
* * *
42055716 GCACTAAGTGTGCGAGTTC-GATTATATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
*
42055744 ACACTAAGTGTGCGG
1 GCACTAAGTGTGCGG
42055759 ACTTACTATA
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 19 0.29
29 46 0.71
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGGGTTCAAATTGTATA
Found at i:42057999 original size:28 final size:28
Alignment explanation
Indices: 42057967--42058021 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
42057957 TCGGCTAGAC
* *
42057967 TTAGACATCATTAA-AGCTTGTAATAAAA
1 TTAGACA-CATTAATAACATGTAATAAAA
42057995 TTAGACACATTAATAACATGTAATAAA
1 TTAGACACATTAATAACATGTAATAAA
42058022 TTAAAACACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 6 0.25
28 18 0.75
ACGTcount: A:0.49, C:0.11, G:0.09, T:0.31
Consensus pattern (28 bp):
TTAGACACATTAATAACATGTAATAAAA
Found at i:42070116 original size:15 final size:15
Alignment explanation
Indices: 42070096--42070131 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
42070086 AGAACAAGAG
42070096 TTCAAATGTTTGAAT
1 TTCAAATGTTTGAAT
42070111 TTCAAATGTTTGAAT
1 TTCAAATGTTTGAAT
42070126 TTCAAA
1 TTCAAA
42070132 CATTTCACAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.36, C:0.08, G:0.11, T:0.44
Consensus pattern (15 bp):
TTCAAATGTTTGAAT
Found at i:42075991 original size:14 final size:15
Alignment explanation
Indices: 42075972--42076001 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
42075962 TAAATCCAAT
42075972 AGCCATAATT-ATCC
1 AGCCATAATTCATCC
42075986 AGCCATAATTCATCC
1 AGCCATAATTCATCC
42076001 A
1 A
42076002 CACATCTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.37, C:0.30, G:0.07, T:0.27
Consensus pattern (15 bp):
AGCCATAATTCATCC
Found at i:42076750 original size:38 final size:38
Alignment explanation
Indices: 42076708--42076847 Score: 176
Period size: 37 Copynumber: 4.0 Consensus size: 38
42076698 TTCTTTTCTG
42076708 CCCTCTGTTTATTTTCTTTTCTTTTCTGCCGATTTGCT
1 CCCTCTGTTTATTTTCTTTTCTTTTCTGCCGATTTGCT
* *
42076746 CCCTCCGTTTCTTTTCTTTTC-TTT-T--C----TG--
1 CCCTCTGTTTATTTTCTTTTCTTTTCTGCCGATTTGCT
42076774 CCCTCTGTTTATTTTCTTTTCTTTTCTGCCGATTTGCT
1 CCCTCTGTTTATTTTCTTTTCTTTTCTGCCGATTTGCT
*
42076812 CCCTTTGTTT-TTTTCTTTTCTTTTCTGCCGATTTGC
1 CCCTCTGTTTATTTTCTTTTCTTTTCTGCCGATTTGC
42076848 CAGTTTTTGC
Statistics
Matches: 87, Mismatches: 5, Indels: 21
0.77 0.04 0.19
Matches are distributed among these distances:
28 19 0.22
29 3 0.03
30 3 0.03
32 1 0.01
34 1 0.01
36 3 0.03
37 29 0.33
38 28 0.32
ACGTcount: A:0.04, C:0.27, G:0.10, T:0.59
Consensus pattern (38 bp):
CCCTCTGTTTATTTTCTTTTCTTTTCTGCCGATTTGCT
Found at i:42076777 original size:28 final size:28
Alignment explanation
Indices: 42076746--42076803 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
42076736 CCGATTTGCT
*
42076746 CCCTCCGTTTCTTTTCTTTTCTTTTCTG
1 CCCTCCGTTTATTTTCTTTTCTTTTCTG
*
42076774 CCCTCTGTTTATTTTCTTTTCTTTTCTG
1 CCCTCCGTTTATTTTCTTTTCTTTTCTG
42076802 CC
1 CC
42076804 GATTTGCTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.02, C:0.31, G:0.07, T:0.60
Consensus pattern (28 bp):
CCCTCCGTTTATTTTCTTTTCTTTTCTG
Found at i:42076798 original size:66 final size:65
Alignment explanation
Indices: 42076671--42076840 Score: 276
Period size: 66 Copynumber: 2.7 Consensus size: 65
42076661 CCTTCTAGCC
*
42076671 TCTGCCGATTTGCTCCCTCC----ATTTCTTTTCTTTTCTGCCCTCTGTTTATTTTCTTTTCTTT
1 TCTGCCGATTTGCTCCCTCCGTTTTTTTCTTTTCTTTTCTGCCCTCTGTTTATTTTCTTTTCTTT
42076732 TCTGCCGATTTGCTCCCTCCGTTTCTTTTCTTTTCTTTTCTGCCCTCTGTTTATTTTCTTTTCTT
1 TCTGCCGATTTGCTCCCTCCGTTT-TTTTCTTTTCTTTTCTGCCCTCTGTTTATTTTCTTTTCTT
42076797 T
65 T
**
42076798 TCTGCCGATTTGCTCCCTTTGTTTTTTTCTTTTCTTTTCTGCC
1 TCTGCCGATTTGCTCCCTCCGTTTTTTTCTTTTCTTTTCTGCC
42076841 GATTTGCCAG
Statistics
Matches: 101, Mismatches: 3, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
61 20 0.20
65 19 0.19
66 62 0.61
ACGTcount: A:0.04, C:0.29, G:0.09, T:0.58
Consensus pattern (65 bp):
TCTGCCGATTTGCTCCCTCCGTTTTTTTCTTTTCTTTTCTGCCCTCTGTTTATTTTCTTTTCTTT
Found at i:42077409 original size:7 final size:7
Alignment explanation
Indices: 42077394--42077427 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
42077384 ATTGTTGATA
42077394 CTGTTGT
1 CTGTTGT
*
42077401 CTATTGT
1 CTGTTGT
42077408 CTGTTGT
1 CTGTTGT
42077415 CTGTTGT
1 CTGTTGT
*
42077422 TTGTTG
1 CTGTTG
42077428 ATGTGTTTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.03, C:0.12, G:0.26, T:0.59
Consensus pattern (7 bp):
CTGTTGT
Found at i:42082099 original size:69 final size:70
Alignment explanation
Indices: 42081967--42082099 Score: 214
Period size: 69 Copynumber: 1.9 Consensus size: 70
42081957 TAGTTTATTA
* * * * *
42081967 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
42082032 CTTAG
66 CTTAG
42082037 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
42082100 GTTATGTGCT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 35 0.60
70 23 0.40
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:42083640 original size:47 final size:47
Alignment explanation
Indices: 42083563--42084124 Score: 836
Period size: 47 Copynumber: 12.0 Consensus size: 47
42083553 TTAGGATTTT
** *
42083563 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
42083610 ATTTGATAAATGTGAGCATGCATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
42083657 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
42083704 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
42083751 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
42083798 ATGTGATGAATGTGAACATGCATATATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
42083845 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
42083892 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
42083939 ATGTGATGAATGTGAACATGCATATATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
42083986 ATGTGATGAATGTGAGCATGCATATATATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
42084033 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
42084080 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
42084125 TAGTGTGAAA
Statistics
Matches: 460, Mismatches: 55, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 460 1.00
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:42083759 original size:25 final size:25
Alignment explanation
Indices: 42083684--42083759 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
42083674 ATGTATATAT
42083684 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
42083709 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
42083731 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
42083756 GTGA
1 GTGA
42083760 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:42084088 original size:25 final size:25
Alignment explanation
Indices: 42084014--42084088 Score: 61
Period size: 23 Copynumber: 3.1 Consensus size: 25
42084004 TGCATATATA
*
42084014 TGATAAGGCCGAATGGCCAATGTGA
1 TGATAAGGCCGAATGGCCAATGTGG
* * *
42084039 TGA-ATGTG-AGCAT-G-CATATGT-G
1 TGATAAG-GCCGAATGGCCA-ATGTGG
42084061 TGATAAGGCCGAATGGCCAATGTGG
1 TGATAAGGCCGAATGGCCAATGTGG
42084086 TGA
1 TGA
42084089 ATATGAACAT
Statistics
Matches: 36, Mismatches: 7, Indels: 14
0.63 0.12 0.25
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.24
Consensus pattern (25 bp):
TGATAAGGCCGAATGGCCAATGTGG
Found at i:42084393 original size:37 final size:37
Alignment explanation
Indices: 42084297--42084401 Score: 165
Period size: 37 Copynumber: 2.8 Consensus size: 37
42084287 TCTGGGTGAA
* *
42084297 ACCCGATGACTACGTGTGGAGAGTATGTCCGGGTAAG
1 ACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAG
42084334 ACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAG
1 ACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAG
* * *
42084371 ACCCGATAACTTCGTGTGGAGATTTCGTCCG
1 ACCCGATGACTACGTGTGGAGATTTTGTCCG
42084402 AGCTAAAGGT
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.22, C:0.21, G:0.31, T:0.26
Consensus pattern (37 bp):
ACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAG
Found at i:42087174 original size:15 final size:15
Alignment explanation
Indices: 42087139--42087309 Score: 60
Period size: 15 Copynumber: 11.6 Consensus size: 15
42087129 TTAAGAATTT
*
42087139 TATTAAATTAT-ATA
1 TATTTAATTATAATA
42087153 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
42087167 TATTTAATAATAAT-
1 TATTTAATTATAATA
42087181 TATGTTAATT-T-ATA
1 TAT-TTAATTATAATA
* *
42087195 T-TTTATAGTATCATA
1 TATTTA-ATTATAATA
*
42087210 TATTATGATT-TAAGTA
1 TATT-TAATTATAA-TA
* * *
42087226 -AATTCA-TATAAAA
1 TATTTAATTATAATA
* *
42087239 TA-TTGATTATTAAGA
1 TATTTAATTA-TAATA
* *
42087254 -ATTTTATTAAATTATA
1 TATTTAATT--ATAATA
42087270 TATTTTAATTATAATA
1 TA-TTTAATTATAATA
*
42087286 TATTTAATAATAAT-
1 TATTTAATTATAATA
42087300 TATGTTAATT
1 TAT-TTAATT
42087310 TATATTTTAT
Statistics
Matches: 118, Mismatches: 19, Indels: 39
0.67 0.11 0.22
Matches are distributed among these distances:
12 3 0.03
13 18 0.15
14 23 0.19
15 49 0.42
16 16 0.14
17 3 0.03
18 6 0.05
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.51
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:42087295 original size:119 final size:119
Alignment explanation
Indices: 42087014--42087425 Score: 718
Period size: 120 Copynumber: 3.4 Consensus size: 119
42087004 AATTATTTTA
* * * * *
42087014 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AATTTATATTT
* *
42087078 TATAGTATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAA-AATATTGATTATTAAG
42087134 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
*
42087199 ATAGTATCATATATTATGATTTAAGTAAATTCATATAAAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAAATATTGATTATTAAG
42087253 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
42087318 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAAAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATAT-AAAATATTGATTATTAAG
42087373 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
42087426 TAAATATGAT
Statistics
Matches: 281, Mismatches: 9, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
119 115 0.41
120 164 0.58
121 2 0.01
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (119 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAAATATTGATTATTAAG
Found at i:42087408 original size:16 final size:16
Alignment explanation
Indices: 42087387--42087428 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
42087377 TTATTAAATT
*
42087387 ATATATTTTAATTATA
1 ATATATTTTAATAATA
42087403 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
42087418 AT-TATGTTTAA
1 ATATAT-TTTAA
42087429 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:42087413 original size:15 final size:15
Alignment explanation
Indices: 42087378--42087419 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
42087368 TTAAGAATTT
*
42087378 TATTAAATTAT-ATA
1 TATTTAATTATAATA
42087392 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
42087406 TATTTAATAATAAT
1 TATTTAATTATAAT
42087420 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:42087660 original size:43 final size:43
Alignment explanation
Indices: 42087573--42087660 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 43
42087563 ACCTCTATTT
42087573 CATTCAACCAAACACAAGATTACTATTATGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTAT-CCTCTATTCCATTA
* *
42087617 CATTCAACCAAACA-ATTGATTTGCTATTAT-CTCTATTCCATTA
1 CATTCAACCAAACACA-AGA-TTACTATTATCCTCTATTCCATTA
42087660 C
1 C
42087661 GCCTCTATTC
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
43 15 0.38
44 16 0.40
45 9 0.22
ACGTcount: A:0.34, C:0.26, G:0.05, T:0.35
Consensus pattern (43 bp):
CATTCAACCAAACACAAGATTACTATTATCCTCTATTCCATTA
Found at i:42087668 original size:16 final size:16
Alignment explanation
Indices: 42087647--42087688 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
42087637 TTGCTATTAT
42087647 CTCTATTCCATTACGC
1 CTCTATTCCATTACGC
42087663 CTCTATTCCATTACGC
1 CTCTATTCCATTACGC
*
42087679 CTGTATTCCA
1 CTCTATTCCA
42087689 ATACAGCGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.19, C:0.36, G:0.07, T:0.38
Consensus pattern (16 bp):
CTCTATTCCATTACGC
Found at i:42093804 original size:18 final size:18
Alignment explanation
Indices: 42093783--42093822 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
42093773 AAAATATTTA
*
42093783 TTTTGATGT-TTTTAGTAT
1 TTTTGATGTATTATA-TAT
42093801 TTTTGATGTATTATATAT
1 TTTTGATGTATTATATAT
42093819 TTTT
1 TTTT
42093823 TAAAATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (18 bp):
TTTTGATGTATTATATAT
Found at i:42093854 original size:12 final size:12
Alignment explanation
Indices: 42093824--42093856 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
42093814 TATATTTTTT
42093824 AAAATT-ATATA
1 AAAATTAATATA
42093835 AAAA-TAATATA
1 AAAATTAATATA
42093846 AAAATTAATAT
1 AAAATTAATAT
42093857 GGGCGGGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:42094143 original size:21 final size:21
Alignment explanation
Indices: 42094117--42094168 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
42094107 GCGGTGGCGG
*
42094117 TGAGATTAGTTACTGTAGCAA
1 TGAGATTAGATACTGTAGCAA
* **
42094138 TGAGATTAGATATTGTAGCGG
1 TGAGATTAGATACTGTAGCAA
42094159 TGAGATTAGA
1 TGAGATTAGA
42094169 AACAATGGTG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.33, C:0.06, G:0.29, T:0.33
Consensus pattern (21 bp):
TGAGATTAGATACTGTAGCAA
Found at i:42097560 original size:6 final size:7
Alignment explanation
Indices: 42097542--42097586 Score: 63
Period size: 7 Copynumber: 6.0 Consensus size: 7
42097532 AGAAAGGATA
42097542 ATTTTTT
1 ATTTTTT
42097549 ATTTTTT
1 ATTTTTT
42097556 ATTTTTT
1 ATTTTTT
42097563 GATTGTGTTT
1 -ATT-T-TTT
42097573 ATTTTTT
1 ATTTTTT
42097580 ATTTTTT
1 ATTTTTT
42097587 GCTTAAAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
7 24 0.69
8 4 0.11
9 4 0.11
10 3 0.09
ACGTcount: A:0.13, C:0.00, G:0.07, T:0.80
Consensus pattern (7 bp):
ATTTTTT
Found at i:42097834 original size:30 final size:30
Alignment explanation
Indices: 42097794--42098304 Score: 834
Period size: 30 Copynumber: 17.1 Consensus size: 30
42097784 GAATATAAAC
*
42097794 TATA-TTTTTTATTTTTAAAATACACAACA
1 TATATTTTTTTATTTTTAAAATACACTACA
42097823 TATATTTTTTTATTTTTAAAATACACTACA
1 TATATTTTTTTATTTTTAAAATACACTACA
42097853 TATATATTTTTTATTTTTAAAATACACTACA
1 TATAT-TTTTTTATTTTTAAAATACACTACA
42097884 TATATATTTTTTATTTTTAAAATACACTACA
1 TATAT-TTTTTTATTTTTAAAATACACTACA
42097915 TATA-TTTTTTATTTTTAAAATACACTACA
1 TATATTTTTTTATTTTTAAAATACACTACA
*
42097944 TATAATTTTTTATTTTTAAAATACACTACA
1 TATATTTTTTTATTTTTAAAATACACTACA
42097974 TATATTTTTTTATTTTTAAAATACACTACA
1 TATATTTTTTTATTTTTAAAATACACTACA
* *
42098004 TATATTATTTTATTTTTAAAATACACTGCA
1 TATATTTTTTTATTTTTAAAATACACTACA
* *
42098034 TATATTTTTTTTACTTTTAAAATACAGTACA
1 TATA-TTTTTTTATTTTTAAAATACACTACA
* *
42098065 TATTTTTTTTTATTTTTAAAATACATTACA
1 TATATTTTTTTATTTTTAAAATACACTACA
*
42098095 TATA--TTTTTACTTTTAAAATACACTACA
1 TATATTTTTTTATTTTTAAAATACACTACA
42098123 TATA-TTTTTTATTTTTAAAATACACTACA
1 TATATTTTTTTATTTTTAAAATACACTACA
42098152 TATAATTTTTTTATTTTTAAAATACACTACA
1 TAT-ATTTTTTTATTTTTAAAATACACTACA
*
42098183 TATAATTTTTTATTTTTAAAATACACTACA
1 TATATTTTTTTATTTTTAAAATACACTACA
*
42098213 TATATTTTTTTATTTTAAAAATACACTACA
1 TATATTTTTTTATTTTTAAAATACACTACA
*
42098243 TATATTTTTTTATTTTAAAAATACACTACA
1 TATATTTTTTTATTTTTAAAATACACTACA
*
42098273 TATATTTTTTTATTTTTAAAATATACTACA
1 TATATTTTTTTATTTTTAAAATACACTACA
42098303 TA
1 TA
42098305 CACTACACCA
Statistics
Matches: 455, Mismatches: 20, Indels: 13
0.93 0.04 0.03
Matches are distributed among these distances:
28 26 0.06
29 59 0.13
30 257 0.56
31 113 0.25
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.52
Consensus pattern (30 bp):
TATATTTTTTTATTTTTAAAATACACTACA
Found at i:42098484 original size:42 final size:42
Alignment explanation
Indices: 42098429--42098517 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 42
42098419 AGGTCTTGGT
* *
42098429 CTTTAGCGACGCTTTTTC-CACAAACGCCGCTAAAGAACA-AAC
1 CTTTAGCGACGC-TTCTCGCAAAAACGCCGCTAAA-AACATAAC
* *
42098471 CTTTAGCGGCGCTTCTCGCAAAAACGCCGCTAAAAATATAAC
1 CTTTAGCGACGCTTCTCGCAAAAACGCCGCTAAAAACATAAC
42098513 CTTTA
1 CTTTA
42098518 AAAAAATTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
41 7 0.17
42 34 0.83
ACGTcount: A:0.33, C:0.29, G:0.15, T:0.24
Consensus pattern (42 bp):
CTTTAGCGACGCTTCTCGCAAAAACGCCGCTAAAAACATAAC
Found at i:42098692 original size:35 final size:35
Alignment explanation
Indices: 42098656--42098723 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
42098646 CTATGAAAAT
42098656 TTTAACTTTA-AAACTAAATATAA-AAATTAATAAA
1 TTTAACTTTAGAAACTAAA-ATAATAAATTAATAAA
* **
42098690 TTTAATTTTAGAATTTAAAATAATAAATTAATAA
1 TTTAACTTTAGAAACTAAAATAATAAATTAATAA
42098724 CACAATTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
34 13 0.45
35 16 0.55
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (35 bp):
TTTAACTTTAGAAACTAAAATAATAAATTAATAAA
Found at i:42099223 original size:23 final size:23
Alignment explanation
Indices: 42099173--42099223 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
42099163 GTTAGGTGTC
*
42099173 AGTATAAAGACATGTCAGATATG
1 AGTATAAAGACATGTCAGAGATG
* * *
42099196 GGTATAAAGGCATGTCTGAGATG
1 AGTATAAAGACATGTCAGAGATG
42099219 AGTAT
1 AGTAT
42099224 GTTCAATTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.27
Consensus pattern (23 bp):
AGTATAAAGACATGTCAGAGATG
Found at i:42100113 original size:12 final size:12
Alignment explanation
Indices: 42100096--42100121 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
42100086 CAAAACAGGC
42100096 TTTTAGCGGCGT
1 TTTTAGCGGCGT
42100108 TTTTAGCGGCGT
1 TTTTAGCGGCGT
42100120 TT
1 TT
42100122 GGACAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:42100314 original size:41 final size:41
Alignment explanation
Indices: 42100227--42100483 Score: 408
Period size: 41 Copynumber: 6.2 Consensus size: 41
42100217 TTGTACCTTA
* *
42100227 CAGATCTTTAGCGGCG-TTTTGAAAAAAAGTGCCGCTAATGCT
1 CAGATCTTTAGCGGCGTTTTTG--AGAAAGCGCCGCTAATGCT
42100269 CAGATCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCT
1 CAGATCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCT
* * *
42100310 CAGATCTTTAGCGGCGTTTTTAAAAAAGTGCCGCTAATGCT
1 CAGATCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCT
* *
42100351 CAGATCTTTAGCGGCGTTTTTGAGAAAACGCCGCTAATACT
1 CAGATCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCT
*
42100392 CAGATCTTTAGCGGCATTTTTGAGAAAGCGCCGCTAATGCT
1 CAGATCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCT
*
42100433 TAGATCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCT
1 CAGATCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCT
42100474 CAGATCTTTA
1 CAGATCTTTA
42100484 ATTGAACATT
Statistics
Matches: 198, Mismatches: 16, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
41 177 0.89
42 16 0.08
43 5 0.03
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (41 bp):
CAGATCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCT
Found at i:42100784 original size:21 final size:21
Alignment explanation
Indices: 42100767--42100808 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
42100757 TAATTATCAT
42100767 TATAGTTTAGGGTTTTATATA
1 TATAGTTTAGGGTTTTATATA
* *
42100788 TATGGTTTAGGG-TATATATA
1 TATAGTTTAGGGTTTTATATA
42100808 T
1 T
42100809 GGTTAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (21 bp):
TATAGTTTAGGGTTTTATATA
Found at i:42100889 original size:14 final size:15
Alignment explanation
Indices: 42100862--42100893 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
42100852 AGGTTTATAA
42100862 ATTATGGAATTAGGG
1 ATTATGGAATTAGGG
42100877 ATTATGG-ATTAGGG
1 ATTATGGAATTAGGG
42100891 ATT
1 ATT
42100894 CTGATTTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.31, C:0.00, G:0.31, T:0.38
Consensus pattern (15 bp):
ATTATGGAATTAGGG
Found at i:42101056 original size:82 final size:82
Alignment explanation
Indices: 42100969--42101142 Score: 222
Period size: 82 Copynumber: 2.1 Consensus size: 82
42100959 GAGTTAGGGA
* * * *
42100969 TTTAGGGTTTATAGATTTAGTGTTAGGTTAGGGTTTAGGGTTTAGATTAATTAGTGCATTTTAAT
1 TTTAGGGTTTAGAGATTTAGGGTCAGGTTAGGGTTTAGGATTTAGATTAATTAGTGCATTTTAAT
*
42101034 TTATATATTAAATAATG
66 TTATATATTAAATAAGG
* * * * * **
42101051 TTTAGGGGTTAGGGATTTGGGGTCGGGTTAGGGTTTATGATTTAGATTAATTAGTGTTTTTTAAT
1 TTTAGGGTTTAGAGATTTAGGGTCAGGTTAGGGTTTAGGATTTAGATTAATTAGTGCATTTTAAT
*
42101116 TTCTATATTAAATAAGG
66 TTATATATTAAATAAGG
42101133 TTTAGAGGTT
1 TTTAG-GGTT
42101143 AGTGGTTTGG
Statistics
Matches: 77, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
82 74 0.96
83 3 0.04
ACGTcount: A:0.26, C:0.02, G:0.25, T:0.47
Consensus pattern (82 bp):
TTTAGGGTTTAGAGATTTAGGGTCAGGTTAGGGTTTAGGATTTAGATTAATTAGTGCATTTTAAT
TTATATATTAAATAAGG
Found at i:42101143 original size:82 final size:82
Alignment explanation
Indices: 42100994--42101155 Score: 245
Period size: 82 Copynumber: 2.0 Consensus size: 82
42100984 TTTAGTGTTA
* * *
42100994 GGTTAGGGTTTAGGGTTTAGATTAATTAGTGCATTTTAATTTATATATTAAATAATGTTTAGGGG
1 GGTTAGGGTTTAGGATTTAGATTAATTAGTGCATTTTAATTTATATATTAAATAAGGTTTAGAGG
42101059 TTAG-GGATTTGGGGTCG
66 TTAGTGG-TTTGGGGTCG
* ** *
42101076 GGTTAGGGTTTATGATTTAGATTAATTAGTGTTTTTTAATTTCTATATTAAATAAGGTTTAGAGG
1 GGTTAGGGTTTAGGATTTAGATTAATTAGTGCATTTTAATTTATATATTAAATAAGGTTTAGAGG
42101141 TTAGTGGTTTGGGGT
66 TTAGTGGTTTGGGGT
42101156 TTAGGGTTTG
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
82 70 0.97
83 2 0.03
ACGTcount: A:0.25, C:0.02, G:0.28, T:0.45
Consensus pattern (82 bp):
GGTTAGGGTTTAGGATTTAGATTAATTAGTGCATTTTAATTTATATATTAAATAAGGTTTAGAGG
TTAGTGGTTTGGGGTCG
Found at i:42101882 original size:27 final size:27
Alignment explanation
Indices: 42101823--42101885 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
42101813 ATTTTACTTT
* **
42101823 AAAAAAAATCAATTTATAAAAACGCCG
1 AAAAAAAATCAATTTATAAAAACACAA
*
42101850 CAAAAAAATCAATTTATAAAAA-ACAA
1 AAAAAAAATCAATTTATAAAAACACAA
42101876 AATAAAAAAT
1 AA-AAAAAAT
42101886 TAATAAAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 2 0.07
27 28 0.93
ACGTcount: A:0.67, C:0.11, G:0.03, T:0.19
Consensus pattern (27 bp):
AAAAAAAATCAATTTATAAAAACACAA
Found at i:42106873 original size:21 final size:21
Alignment explanation
Indices: 42106847--42106892 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
42106837 TCTTGGATGT
42106847 GGGAAA-TTAGGGATTTTAGGG
1 GGGAAAGTTAGGGA-TTTAGGG
*
42106868 GGGAAAGTTAGGGATTTCGGG
1 GGGAAAGTTAGGGATTTAGGG
42106889 GGGA
1 GGGA
42106893 GGGGGGAGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.26, C:0.02, G:0.48, T:0.24
Consensus pattern (21 bp):
GGGAAAGTTAGGGATTTAGGG
Found at i:42108725 original size:41 final size:41
Alignment explanation
Indices: 42108638--42108755 Score: 148
Period size: 41 Copynumber: 2.9 Consensus size: 41
42108628 TTTTATTATT
* * * *
42108638 ATTAGCGGCGCTTTTCCAAAAATGCCGCTAAAGG-TCGAGT
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGC
* * *
42108678 ACTAGCGGCGATTTTTCAAAAACGCTGCTAAAGGCCCGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGC
* *
42108719 ATTAGCGGTGCTTTTTCAAAAACGCCGCTAAATGCCC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCC
42108756 CCAAAACTCA
Statistics
Matches: 65, Mismatches: 12, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
40 29 0.45
41 36 0.55
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (41 bp):
ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGC
Found at i:42108925 original size:40 final size:40
Alignment explanation
Indices: 42108803--42108925 Score: 151
Period size: 40 Copynumber: 3.1 Consensus size: 40
42108793 TTTGCAACGC
* *
42108803 TTTTCAAAAAACGCCGCTAATGCTT-ATTTTTAGTGGCGT
1 TTTTCAAAAAGCGCAGCTAATGCTTGATTTTTAGTGGCGT
* * **
42108842 TTTCCAAAAAGCGCCA-CTAATGCTCGACCTTTAGTGGCGT
1 TTTTCAAAAAGCG-CAGCTAATGCTTGATTTTTAGTGGCGT
**
42108882 TTTTGTAAAAGCGCAGCTAATGCTTGATTTTTAGTGGCGT
1 TTTTCAAAAAGCGCAGCTAATGCTTGATTTTTAGTGGCGT
42108922 TTTT
1 TTTT
42108926 TGTCCAAATG
Statistics
Matches: 69, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
39 21 0.30
40 48 0.70
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (40 bp):
TTTTCAAAAAGCGCAGCTAATGCTTGATTTTTAGTGGCGT
Found at i:42108942 original size:41 final size:40
Alignment explanation
Indices: 42108810--42108942 Score: 116
Period size: 40 Copynumber: 3.3 Consensus size: 40
42108800 CGCTTTTCAA
42108810 AAAACGCCGCTAATGCTT-ATTTTTAGTGGCG--TTT-TCC
1 AAAA-GCCGCTAATGCTTGATTTTTAGTGGCGTTTTTGTCC
* * **
42108847 AAAAAGCGCCACTAATGCTCGACCTTTAGTGGCGTTTTTGT--
1 -AAAA--GCCGCTAATGCTTGATTTTTAGTGGCGTTTTTGTCC
42108888 AAAAGCGCAGCTAATGCTTGATTTTTAGTGGCGTTTTTTGTCC
1 AAAAGC-C-GCTAATGCTTGATTTTTAGTGGCG-TTTTTGTCC
*
42108931 AAATGCCGCTAA
1 AAAAGCCGCTAA
42108943 AAATGCCGCT
Statistics
Matches: 76, Mismatches: 9, Indels: 17
0.75 0.09 0.17
Matches are distributed among these distances:
38 6 0.08
39 13 0.17
40 35 0.46
41 12 0.16
42 4 0.05
43 6 0.08
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (40 bp):
AAAAGCCGCTAATGCTTGATTTTTAGTGGCGTTTTTGTCC
Found at i:42108948 original size:12 final size:12
Alignment explanation
Indices: 42108931--42108956 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
42108921 TTTTTTGTCC
42108931 AAATGCCGCTAA
1 AAATGCCGCTAA
42108943 AAATGCCGCTAA
1 AAATGCCGCTAA
42108955 AA
1 AA
42108957 GCTTGTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.23, G:0.15, T:0.15
Consensus pattern (12 bp):
AAATGCCGCTAA
Found at i:42109021 original size:29 final size:30
Alignment explanation
Indices: 42108975--42109144 Score: 259
Period size: 30 Copynumber: 6.0 Consensus size: 30
42108965 TGGTGTAGTG
42108975 ATATATATTTTTATTTTTAAAATACACTAC
1 ATATATATTTTTATTTTTAAAATACACTAC
*
42109005 ATATAT-TTTTTACTTTTAAAATACACTAC
1 ATATATATTTTTATTTTTAAAATACACTAC
42109034 --ATA-A--TTT-TTTTT-AAATACACTAC
1 ATATATATTTTTATTTTTAAAATACACTAC
42109057 ATATATATTTTTATTTTTAAAATACACTAC
1 ATATATATTTTTATTTTTAAAATACACTAC
*
42109087 ATATATTTTTTTATTTTTAAAATACACTAC
1 ATATATATTTTTATTTTTAAAATACACTAC
42109117 ATATATATTTTTA-TTTTAAAATACACTA
1 ATATATATTTTTATTTTTAAAATACACTA
42109145 ATACAGTGCA
Statistics
Matches: 128, Mismatches: 4, Indels: 17
0.86 0.03 0.11
Matches are distributed among these distances:
23 11 0.09
24 4 0.03
25 6 0.05
26 1 0.01
27 3 0.02
28 3 0.02
29 42 0.33
30 58 0.45
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (30 bp):
ATATATATTTTTATTTTTAAAATACACTAC
Found at i:42109067 original size:82 final size:84
Alignment explanation
Indices: 42108975--42109128 Score: 276
Period size: 82 Copynumber: 1.9 Consensus size: 84
42108965 TGGTGTAGTG
42108975 ATATATATTTTTATTTTTAAAATACACTACATATA-TTTTTTACTTTTAAAATACACTACATA-A
1 ATATATATTTTTATTTTTAAAATACACTACATATATTTTTTTACTTTTAAAATACACTACATATA
*
42109038 TTTTTTTTAAATACACTAC
66 TATTTTTTAAATACACTAC
*
42109057 ATATATATTTTTATTTTTAAAATACACTACATATATTTTTTTATTTTTAAAATACACTACATATA
1 ATATATATTTTTATTTTTAAAATACACTACATATATTTTTTTACTTTTAAAATACACTACATATA
42109122 TATTTTT
66 TATTTTT
42109129 ATTTTAAAAT
Statistics
Matches: 68, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
82 35 0.51
83 26 0.38
84 7 0.10
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.51
Consensus pattern (84 bp):
ATATATATTTTTATTTTTAAAATACACTACATATATTTTTTTACTTTTAAAATACACTACATATA
TATTTTTTAAATACACTAC
Found at i:42109642 original size:15 final size:15
Alignment explanation
Indices: 42109624--42109652 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
42109614 GTATTTGTAA
42109624 GGAATTATCTCCAAG
1 GGAATTATCTCCAAG
42109639 GGAATTATCTCCAA
1 GGAATTATCTCCAA
42109653 TGGCAGCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (15 bp):
GGAATTATCTCCAAG
Found at i:42114861 original size:33 final size:33
Alignment explanation
Indices: 42114819--42115245 Score: 149
Period size: 33 Copynumber: 12.4 Consensus size: 33
42114809 GTGGATTCAA
*
42114819 CACTTAGCAACCACCAGTGATTCGGGGAATCAG
1 CACTTAGCAACCACCAATGATTCGGGGAATCAG
*
42114852 CACTTAGCAACCCCTTTCACATTCAATGATACGGTGGAATCAG
1 CACTTAGCAA---C---CAC---CAATGATTCGG-GGAATCAG
* *
42114895 CACTTAGCAACCACCAATGAATCGGGGAATCAA
1 CACTTAGCAACCACCAATGATTCGGGGAATCAG
* * *
42114928 CACTTAGCAACCCCTTTCACATTCAATGATACGGTAGAATTAG
1 CACTTAGCAA---C---CAC---CAATGATTCGG-GGAATCAG
* *
42114971 CACTTAGCAACCACCAATGAATCAGGGAATCAG
1 CACTTAGCAACCACCAATGATTCGGGGAATCAG
* *
42115004 CACTTAGCAACC-CC-----TTGGGGGAATCAA
1 CACTTAGCAACCACCAATGATTCGGGGAATCAG
* * *
42115031 CACTTAGCAACCCCTTTCACATTTAAAATACGGTGGAATCAG
1 CACTTAGCAACCAC---CA-A--T--GATTCGG-GGAATCAG
*
42115073 C-CTTAGCAACCACCAATGGGTT-GGGGAATCAG
1 CACTTAGCAACCACCAAT-GATTCGGGGAATCAG
*
42115105 CACTTAGCAACC-CC-----TTGGGGGAATCAG
1 CACTTAGCAACCACCAATGATTCGGGGAATCAG
* * * *
42115132 CACTTGGCAACCCCCTTCACATTTAAAATACGGTGGAATCAG
1 CACTTAGCAA-CCAC--CA-A--T--GATTCGG-GGAATCAG
*
42115174 CACTTAGCAACCACCGATGGA-TCGGGGAATCAG
1 CACTTAGCAACCACCAAT-GATTCGGGGAATCAG
*
42115207 CACTTAGCAACC-CC-----TTGGGGGAATCAG
1 CACTTAGCAACCACCAATGATTCGGGGAATCAG
42115234 CACTTAGCAACC
1 CACTTAGCAACC
42115246 CCCTTAATAT
Statistics
Matches: 304, Mismatches: 37, Indels: 112
0.67 0.08 0.25
Matches are distributed among these distances:
26 2 0.01
27 63 0.21
28 3 0.01
29 1 0.00
31 2 0.01
32 15 0.05
33 77 0.25
34 21 0.07
35 2 0.01
36 3 0.01
37 7 0.02
38 3 0.01
39 7 0.02
40 2 0.01
41 20 0.07
42 43 0.14
43 33 0.11
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.21
Consensus pattern (33 bp):
CACTTAGCAACCACCAATGATTCGGGGAATCAG
Found at i:42114892 original size:43 final size:42
Alignment explanation
Indices: 42114836--42114982 Score: 161
Period size: 43 Copynumber: 3.7 Consensus size: 42
42114826 CAACCACCAG
*
42114836 TGATTCGGGGAATCAGCACTTAGCAACCCCTTTCACATTCAA
1 TGATACGGGGAATCAGCACTTAGCAACCCCTTTCACATTCAA
42114878 TGATACGGTGGAATCAGCACTTAGCAA---C---CAC---CAA
1 TGATACGG-GGAATCAGCACTTAGCAACCCCTTTCACATTCAA
*
42114912 TGA-ATCGGGGAATCAACACTTAGCAACCCCTTTCACATTCAA
1 TGATA-CGGGGAATCAGCACTTAGCAACCCCTTTCACATTCAA
* *
42114954 TGATACGGTAGAATTAGCACTTAGCAACC
1 TGATACGG-GGAATCAGCACTTAGCAACC
42114983 ACCAATGAAT
Statistics
Matches: 87, Mismatches: 5, Indels: 25
0.74 0.04 0.21
Matches are distributed among these distances:
33 18 0.21
34 9 0.10
36 1 0.01
37 3 0.03
39 3 0.03
40 1 0.01
42 16 0.18
43 36 0.41
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.23
Consensus pattern (42 bp):
TGATACGGGGAATCAGCACTTAGCAACCCCTTTCACATTCAA
Found at i:42114935 original size:76 final size:76
Alignment explanation
Indices: 42114809--42115019 Score: 350
Period size: 76 Copynumber: 2.8 Consensus size: 76
42114799 TCCGTTATCA
* * * *
42114809 GTGGATTCAACACTTAGCAACCACCAGTGATTCGGGGAATCAGCACTTAGCAACCCCTTTCACAT
1 GTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTTCACAT
42114874 TCAATGATACG
66 TCAATGATACG
*
42114885 GTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAACACTTAGCAACCCCTTTCACAT
1 GTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTTCACAT
42114950 TCAATGATACG
66 TCAATGATACG
* * *
42114961 GTAGAATTAGCACTTAGCAACCACCAATGAATCAGGGAATCAGCACTTAGCAACCCCTT
1 GTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTT
42115020 GGGGGAATCA
Statistics
Matches: 126, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
76 126 1.00
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (76 bp):
GTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTTCACAT
TCAATGATACG
Found at i:42115025 original size:27 final size:27
Alignment explanation
Indices: 42114995--42115046 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
42114985 CAATGAATCA
*
42114995 GGGAATCAGCACTTAGCAACCCCTTGG
1 GGGAATCAACACTTAGCAACCCCTTGG
42115022 GGGAATCAACACTTAGCAACCCCTT
1 GGGAATCAACACTTAGCAACCCCTT
42115047 TCACATTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.19
Consensus pattern (27 bp):
GGGAATCAACACTTAGCAACCCCTTGG
Found at i:42115111 original size:101 final size:102
Alignment explanation
Indices: 42114918--42115247 Score: 527
Period size: 101 Copynumber: 3.2 Consensus size: 102
42114908 CCAATGAATC
* * * *
42114918 GGGGAATCAACACTTAGCAACCCCTTTCACATTCAATGATACGGTAGAATTAGCACTTAGCAACC
1 GGGGAATCAACACTTAGCAACCCCTTTCACATTTAA-AATACGGTGGAATCAGCACTTAGCAACC
* *
42114983 ACCAATGAATCAGGGAATCAGCACTTAGCAACCCCTTG
65 ACCAATGGATCGGGGAATCAGCACTTAGCAACCCCTTG
42115021 GGGGAATCAACACTTAGCAACCCCTTTCACATTTAAAATACGGTGGAATCAGC-CTTAGCAACCA
1 GGGGAATCAACACTTAGCAACCCCTTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
* *
42115085 CCAATGGGTTGGGGAATCAGCACTTAGCAACCCCTTG
66 CCAATGGATCGGGGAATCAGCACTTAGCAACCCCTTG
* * *
42115122 GGGGAATCAGCACTTGGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAACACTTAGCAACCCCTTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
*
42115187 CCGATGGATCGGGGAATCAGCACTTAGCAACCCCTTG
66 CCAATGGATCGGGGAATCAGCACTTAGCAACCCCTTG
*
42115224 GGGGAATCAGCACTTAGCAACCCC
1 GGGGAATCAACACTTAGCAACCCC
42115248 CTTAATATTC
Statistics
Matches: 211, Mismatches: 15, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
101 94 0.45
102 82 0.39
103 35 0.17
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.20
Consensus pattern (102 bp):
GGGGAATCAACACTTAGCAACCCCTTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
CCAATGGATCGGGGAATCAGCACTTAGCAACCCCTTG
Found at i:42117082 original size:19 final size:19
Alignment explanation
Indices: 42117058--42117097 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
42117048 ATTGTATCAA
42117058 AAAGAATAAAAATGATTAG
1 AAAGAATAAAAATGATTAG
* *
42117077 AAAGAATAGATATGATTAG
1 AAAGAATAAAAATGATTAG
42117096 AA
1 AA
42117098 CCTATAATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.60, C:0.00, G:0.17, T:0.23
Consensus pattern (19 bp):
AAAGAATAAAAATGATTAG
Found at i:42119903 original size:39 final size:39
Alignment explanation
Indices: 42119859--42119954 Score: 147
Period size: 39 Copynumber: 2.5 Consensus size: 39
42119849 CCCATACCTT
** **
42119859 TCCCTCTTTCCCACCATCCCTCCCCCTACTTCGATTCTC
1 TCCCTCTCCCCCACCATCCCTCCCCCTACTTCGACCCTC
*
42119898 TCCCTCTCCCCCACCATCCCTCCCCCTACTTTGACCCTC
1 TCCCTCTCCCCCACCATCCCTCCCCCTACTTCGACCCTC
42119937 TCCCTCTCCCCCACCATC
1 TCCCTCTCCCCCACCATC
42119955 TATTTCCTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 52 1.00
ACGTcount: A:0.10, C:0.59, G:0.02, T:0.28
Consensus pattern (39 bp):
TCCCTCTCCCCCACCATCCCTCCCCCTACTTCGACCCTC
Found at i:42119974 original size:39 final size:39
Alignment explanation
Indices: 42119859--42119990 Score: 113
Period size: 39 Copynumber: 3.4 Consensus size: 39
42119849 CCCATACCTT
** * * **
42119859 TCCCTCTTTCCCACCATCCCTCCCCCTACT-TCGATTCTC
1 TCCCTCTCCCCCACCATCCATCCCCCTACTCT-AACCCTC
* * *
42119898 TCCCTCTCCCCCACCATCCCTCCCCCTACTTTGACCCTC
1 TCCCTCTCCCCCACCATCCATCCCCCTACTCTAACCCTC
* ** * *
42119937 TCCCTCTCCCCCACCATCTATTTCCTTTCTCTAACCCTC
1 TCCCTCTCCCCCACCATCCATCCCCCTACTCTAACCCTC
*
42119976 TCCCTCTACCCCACC
1 TCCCTCTCCCCCACC
42119991 GTCCCTTTCC
Statistics
Matches: 79, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 78 0.99
40 1 0.01
ACGTcount: A:0.11, C:0.57, G:0.02, T:0.30
Consensus pattern (39 bp):
TCCCTCTCCCCCACCATCCATCCCCCTACTCTAACCCTC
Found at i:42120000 original size:39 final size:39
Alignment explanation
Indices: 42119895--42120002 Score: 126
Period size: 39 Copynumber: 2.8 Consensus size: 39
42119885 TACTTCGATT
** * *
42119895 CTCTCCCTCTCCCCCACCATCCCTCCCCCTACTTTGACC
1 CTCTCCCTCTCCCCCACCATCCCTTTCCCTACTCTAACC
** * *
42119934 CTCTCCCTCTCCCCCACCATCTATTTCCTTTCTCTAACC
1 CTCTCCCTCTCCCCCACCATCCCTTTCCCTACTCTAACC
* *
42119973 CTCTCCCTCTACCCCACCGTCCCTTTCCCT
1 CTCTCCCTCTCCCCCACCATCCCTTTCCCT
42120003 CTACCAACCC
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.10, C:0.57, G:0.02, T:0.31
Consensus pattern (39 bp):
CTCTCCCTCTCCCCCACCATCCCTTTCCCTACTCTAACC
Found at i:42120012 original size:39 final size:39
Alignment explanation
Indices: 42119931--42120018 Score: 97
Period size: 39 Copynumber: 2.2 Consensus size: 39
42119921 CCCTACTTTG
* * * *
42119931 ACCCTCTCCCTCTCCCCCACCATCTATTTCCTTTCTCTA
1 ACCCTCTCCCTCTACCCCACCATCCATTTCCTCTCTCCA
* *
42119970 ACCCTCTCCCTCTACCCCACCGTCCCTTTCC-CTCTACCA
1 ACCCTCTCCCTCTACCCCACCATCCATTTCCTCTCT-CCA
42120009 ACCCTACTCC
1 ACCCT-CTCC
42120019 AATTTCCAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
38 3 0.07
39 34 0.83
40 4 0.10
ACGTcount: A:0.14, C:0.56, G:0.01, T:0.30
Consensus pattern (39 bp):
ACCCTCTCCCTCTACCCCACCATCCATTTCCTCTCTCCA
Found at i:42123438 original size:18 final size:20
Alignment explanation
Indices: 42123417--42123466 Score: 68
Period size: 18 Copynumber: 2.5 Consensus size: 20
42123407 AAAGGAAGAC
42123417 AGAAAAAGA-AATCAAAAA-
1 AGAAAAAGAGAATCAAAAAG
*
42123435 AGAAAAAGAGAATGAAAAAG
1 AGAAAAAGAGAATCAAAAAG
42123455 AGCAAAAAGAGA
1 AG-AAAAAGAGA
42123467 TTGAGAGTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 9 0.32
19 8 0.29
20 2 0.07
21 9 0.32
ACGTcount: A:0.72, C:0.04, G:0.20, T:0.04
Consensus pattern (20 bp):
AGAAAAAGAGAATCAAAAAG
Found at i:42125247 original size:33 final size:34
Alignment explanation
Indices: 42125210--42125289 Score: 103
Period size: 33 Copynumber: 2.4 Consensus size: 34
42125200 GAGTTAGTTT
*
42125210 ATTAAATTTAGTTTAGCTCAAATAAGTGTTAG-A
1 ATTAAATTTAGTTTACCTCAAATAAGTGTTAGTA
* * *
42125243 ATTAATTTTAGTTCACCTTAAATAAGTGTTAGTA
1 ATTAAATTTAGTTTACCTCAAATAAGTGTTAGTA
42125277 ATT-AATTT-GTTTA
1 ATTAAATTTAGTTTA
42125290 AATCTGGACA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
32 4 0.10
33 32 0.80
34 4 0.10
ACGTcount: A:0.36, C:0.06, G:0.12, T:0.45
Consensus pattern (34 bp):
ATTAAATTTAGTTTACCTCAAATAAGTGTTAGTA
Found at i:42150697 original size:25 final size:25
Alignment explanation
Indices: 42150657--42150751 Score: 111
Period size: 25 Copynumber: 3.8 Consensus size: 25
42150647 TATGCTCATA
* *
42150657 TGAGCTGTA-AACGGTAACCTCCTC
1 TGAGCTGAATAACGGTAAGCTCCTC
* *
42150681 TGAGTTGAATAATGGTAAGCTCCTC
1 TGAGCTGAATAACGGTAAGCTCCTC
** * *
42150706 CAAGCTGAATAACAGTAAGCTCATC
1 TGAGCTGAATAACGGTAAGCTCCTC
42150731 TGAGCTGAATAACGGTAAGCT
1 TGAGCTGAATAACGGTAAGCT
42150752 TATACAAGCT
Statistics
Matches: 57, Mismatches: 13, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
24 7 0.12
25 50 0.88
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (25 bp):
TGAGCTGAATAACGGTAAGCTCCTC
Found at i:42150740 original size:50 final size:50
Alignment explanation
Indices: 42150670--42150779 Score: 130
Period size: 50 Copynumber: 2.2 Consensus size: 50
42150660 GCTGTAAACG
* * * * * *
42150670 GTAACCTCCTCTGAGTTGAATAATGGTAAGCTCCTCCAAGCTGAATAACA
1 GTAAGCTCATCTGAGCTGAATAACGGTAAGCTCATACAAGCTGAATAACA
* * * *
42150720 GTAAGCTCATCTGAGCTGAATAACGGTAAGCTTATACAAGCTGAGTATCG
1 GTAAGCTCATCTGAGCTGAATAACGGTAAGCTCATACAAGCTGAATAACA
42150770 GTAAGCTCAT
1 GTAAGCTCAT
42150780 AAGAGCTAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (50 bp):
GTAAGCTCATCTGAGCTGAATAACGGTAAGCTCATACAAGCTGAATAACA
Found at i:42150761 original size:25 final size:24
Alignment explanation
Indices: 42150686--42150779 Score: 98
Period size: 25 Copynumber: 3.8 Consensus size: 24
42150676 TCCTCTGAGT
* *
42150686 TGAATAATGGTAAGCTCCTCCAAGC
1 TGAATAACGGTAAGCTCAT-CAAGC
* *
42150711 TGAATAACAGTAAGCTCATCTGAGC
1 TGAATAACGGTAAGCTCATC-AAGC
*
42150736 TGAATAACGGTAAGCTTATACAAGC
1 TGAATAACGGTAAGCTCAT-CAAGC
* *
42150761 TGAGTATCGGTAAGCTCAT
1 TGAATAACGGTAAGCTCAT
42150780 AAGAGCTAAA
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
24 1 0.02
25 55 0.96
26 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (24 bp):
TGAATAACGGTAAGCTCATCAAGC
Found at i:42150786 original size:25 final size:25
Alignment explanation
Indices: 42150650--42150786 Score: 91
Period size: 25 Copynumber: 5.5 Consensus size: 25
42150640 GTACATGTAT
* *
42150650 GCTCATATGAGCTGTA-AACGGTAA
1 GCTCATAAGAGCTGAATAACGGTAA
* * ** * *
42150674 CCTCCTCTGAGTTGAATAATGGTAA
1 GCTCATAAGAGCTGAATAACGGTAA
* * *
42150699 GCTCCTCCA-AGCTGAATAACAGTAA
1 GCTCAT-AAGAGCTGAATAACGGTAA
**
42150724 GCTCATCTGAGCTGAATAACGGTAA
1 GCTCATAAGAGCTGAATAACGGTAA
* * *
42150749 GCTTATACA-AGCTGAGTATCGGTAA
1 GCTCATA-AGAGCTGAATAACGGTAA
42150774 GCTCATAAGAGCT
1 GCTCATAAGAGCT
42150787 AAAATCGGTA
Statistics
Matches: 88, Mismatches: 20, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
24 13 0.15
25 74 0.84
26 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (25 bp):
GCTCATAAGAGCTGAATAACGGTAA
Found at i:42171223 original size:39 final size:40
Alignment explanation
Indices: 42171168--42171249 Score: 157
Period size: 39 Copynumber: 2.1 Consensus size: 40
42171158 GTCATAGTCT
42171168 GGGCCTAAGCCCATTTCAATAATAGTTTCAATTTCAGTTA
1 GGGCCTAAGCCCATTTCAATAATAGTTTCAATTTCAGTTA
42171208 GGGCC-AAGCCCATTTCAATAATAGTTTCAATTTCAGTTA
1 GGGCCTAAGCCCATTTCAATAATAGTTTCAATTTCAGTTA
42171247 GGG
1 GGG
42171250 GCTTAACCCA
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
39 37 0.88
40 5 0.12
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (40 bp):
GGGCCTAAGCCCATTTCAATAATAGTTTCAATTTCAGTTA
Found at i:42178319 original size:47 final size:47
Alignment explanation
Indices: 42178235--42178737 Score: 808
Period size: 47 Copynumber: 10.6 Consensus size: 47
42178225 TATTTGAATA
*
42178235 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
42178284 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
42178331 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
42178380 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
42178427 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
42178476 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
42178523 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
42178570 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
42178617 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
42178664 AATGTGAAAGTGTATATATGCGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
42178711 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
42178738 TCCCGAAGGG
Statistics
Matches: 427, Mismatches: 23, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
47 326 0.76
49 101 0.24
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:42178344 original size:96 final size:96
Alignment explanation
Indices: 42178235--42178737 Score: 847
Period size: 96 Copynumber: 5.3 Consensus size: 96
42178225 TATTTGAATA
*
42178235 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
42178300 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
42178331 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
42178396 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
42178427 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
42178492 TATGTGATAAGGCCTAATAGCCGATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
42178523 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
42178586 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
42178617 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * * *
42178680 TATGCGACAGGGCCGAGTGGCCAACGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
42178711 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
42178738 TCCCGAAGGG
Statistics
Matches: 390, Mismatches: 15, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
94 189 0.48
95 1 0.00
96 200 0.51
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:42178957 original size:37 final size:37
Alignment explanation
Indices: 42178856--42178957 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
42178846 CCGAGCTCTA
*
42178856 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
42178893 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* * *
42178930 AAGACCCGATAACTTCATGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
42178958 CGTCTGAGCT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:42181629 original size:39 final size:40
Alignment explanation
Indices: 42181522--42181663 Score: 114
Period size: 40 Copynumber: 3.6 Consensus size: 40
42181512 TGAATGATGT
* * * *
42181522 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGA-T-ACTATAA
* * * * *
42181562 CCGGACTAAGAT-CCGAAGGTATTTGTGCGAGATGCTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTGGTGCGAGATACTATA-A
*
42181602 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGATACTATAA
*
42181641 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
42181664 TGAACGAGGA
Statistics
Matches: 83, Mismatches: 12, Indels: 14
0.76 0.11 0.13
Matches are distributed among these distances:
39 31 0.37
40 41 0.49
41 10 0.12
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGATACTATAA
Found at i:42188160 original size:40 final size:40
Alignment explanation
Indices: 42188105--42188188 Score: 168
Period size: 40 Copynumber: 2.1 Consensus size: 40
42188095 AATGATTTGA
42188105 AGAAAACGTACTGGTGGGCAGGAATGAAAAGAGATATTTC
1 AGAAAACGTACTGGTGGGCAGGAATGAAAAGAGATATTTC
42188145 AGAAAACGTACTGGTGGGCAGGAATGAAAAGAGATATTTC
1 AGAAAACGTACTGGTGGGCAGGAATGAAAAGAGATATTTC
42188185 AGAA
1 AGAA
42188189 TTTGTTTCTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.42, C:0.10, G:0.30, T:0.19
Consensus pattern (40 bp):
AGAAAACGTACTGGTGGGCAGGAATGAAAAGAGATATTTC
Found at i:42189284 original size:33 final size:32
Alignment explanation
Indices: 42189234--42189333 Score: 84
Period size: 28 Copynumber: 3.2 Consensus size: 32
42189224 CATGCAATAT
* *
42189234 CAGTCTGGGCCTGAGCCCTATACAGTAACAGTA
1 CAGTGTGGGCCTTAGCCC-ATACAGTAACAGTA
*
42189267 CAGTGTGGGCCTTAGCCC--A-A--AACAATAA
1 CAGTGTGGGCCTTAGCCCATACAGTAACAGT-A
* *
42189295 CAGTGTGGGCCTTAGTCCAATACAGTTATCAGTA
1 CAGTGTGGGCCTTAG-CCCATACAG-TAACAGTA
42189329 CAGTG
1 CAGTG
42189334 CAATAATGCA
Statistics
Matches: 53, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
27 5 0.09
28 16 0.30
29 3 0.06
30 1 0.02
31 1 0.02
32 1 0.02
33 16 0.30
34 6 0.11
35 4 0.08
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (32 bp):
CAGTGTGGGCCTTAGCCCATACAGTAACAGTA
Found at i:42189717 original size:27 final size:26
Alignment explanation
Indices: 42189670--42189866 Score: 153
Period size: 27 Copynumber: 7.4 Consensus size: 26
42189660 GTATAGCAGC
* **
42189670 CATTTTACCCTATGGGGTATTTTGGT
1 CATTTTACCCTCTGGGGTATTTCAGT
* *
42189696 CATTTTATCCTCTGAGGGTATTTCACT
1 CATTTTACCCTCTG-GGGTATTTCAGT
*
42189723 CATTTTACCCT-TCAGGGTATTTCAGT
1 CATTTTACCCTCT-GGGGTATTTCAGT
* *
42189749 CATTTTACCCTCCGGGGGTAATTCAGT
1 CATTTTACCCT-CTGGGGTATTTCAGT
* * * *
42189776 CTTTTTACCTTTTGGGGGTATTTCGGT
1 CATTTTACCCTCT-GGGGTATTTCAGT
* **
42189803 CATTTTACCCTTTCGGGGTATTTTGGT
1 CATTTTACCCTCT-GGGGTATTTCAGT
* * * *
42189830 CATTCTACCCTTTGGGGGTGTTTCGGT
1 CATTTTACCCTCT-GGGGTATTTCAGT
*
42189857 TATTTTACCC
1 CATTTTACCC
42189867 ACGAATTGCA
Statistics
Matches: 139, Mismatches: 27, Indels: 9
0.79 0.15 0.05
Matches are distributed among these distances:
26 35 0.25
27 104 0.75
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.44
Consensus pattern (26 bp):
CATTTTACCCTCTGGGGTATTTCAGT
Found at i:42189808 original size:54 final size:53
Alignment explanation
Indices: 42189670--42189866 Score: 182
Period size: 54 Copynumber: 3.7 Consensus size: 53
42189660 GTATAGCAGC
* * * * * *
42189670 CATTTTACCCTAT-GGGGTATTTTGGTCATTTTATCCTCTGAGGGTATTTCACT
1 CATTTTA-CCTTTGGGGGTATTTCGGTCATTTTACCCTCCGGGGGTATTTCAGT
* ** * *
42189723 CATTTTACCCTTCAGGGTATTTCAGTCATTTTACCCTCCGGGGGTAATTCAGT
1 CATTTTACCTTTGGGGGTATTTCGGTCATTTTACCCTCCGGGGGTATTTCAGT
* * **
42189776 CTTTTTACCTTTTGGGGGTATTTCGGTCATTTTACCCTTTC-GGGGTATTTTGGT
1 CATTTTACC-TTTGGGGGTATTTCGGTCATTTTACCC-TCCGGGGGTATTTCAGT
* * *
42189830 CATTCTACCCTTTGGGGGTGTTTCGGTTATTTTACCC
1 CATTTTA-CCTTTGGGGGTATTTCGGTCATTTTACCC
42189867 ACGAATTGCA
Statistics
Matches: 117, Mismatches: 23, Indels: 7
0.80 0.16 0.05
Matches are distributed among these distances:
52 3 0.03
53 47 0.40
54 63 0.54
55 4 0.03
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.44
Consensus pattern (53 bp):
CATTTTACCTTTGGGGGTATTTCGGTCATTTTACCCTCCGGGGGTATTTCAGT
Found at i:42198346 original size:33 final size:33
Alignment explanation
Indices: 42198296--42198361 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
42198286 CATGCAATAT
* * *
42198296 CAGTCTGGGCCTGAGCCCTATATAGTAACAGTA
1 CAGTCTGGGCCTGAGCCCAAAACAGTAACAGTA
* *
42198329 CAGTGTGGGCCTTAGCCCAAAACAGTAACAGTA
1 CAGTCTGGGCCTGAGCCCAAAACAGTAACAGTA
42198362 TGGGCCTTAG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.21
Consensus pattern (33 bp):
CAGTCTGGGCCTGAGCCCAAAACAGTAACAGTA
Found at i:42198365 original size:28 final size:28
Alignment explanation
Indices: 42198322--42198383 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
42198312 CCTATATAGT
*
42198322 AACAGT-ACAGTGTGGGCCTTAGCCCAA
1 AACAGTAACAGTATGGGCCTTAGCCCAA
42198349 AACAGTAACAGTATGGGCCTTAGCCCAA
1 AACAGTAACAGTATGGGCCTTAGCCCAA
*
42198377 TACAGTA
1 AACAGTA
42198384 GTCAGTACAG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 6 0.19
28 26 0.81
ACGTcount: A:0.34, C:0.24, G:0.23, T:0.19
Consensus pattern (28 bp):
AACAGTAACAGTATGGGCCTTAGCCCAA
Found at i:42203313 original size:27 final size:27
Alignment explanation
Indices: 42203285--42203471 Score: 250
Period size: 27 Copynumber: 6.9 Consensus size: 27
42203275 TAGGTATAAT
* *
42203285 GACCGTAATGCCCCTATAGCGTAAAAT
1 GACCGTAATGCCCCTATAGGGTAAAAA
*
42203312 GACCGTAATGCCCCTGTAGGGTAAAAA
1 GACCGTAATGCCCCTATAGGGTAAAAA
** *
42203339 GATTGTAATGCCCCTATAGGTTAAAAA
1 GACCGTAATGCCCCTATAGGGTAAAAA
** *
42203366 GACTATAATGCCCCTGTAGGGTAAAAA
1 GACCGTAATGCCCCTATAGGGTAAAAA
* *
42203393 GACCATAATGCCTCTATAGGGTAAAAA
1 GACCGTAATGCCCCTATAGGGTAAAAA
42203420 GACCGTAATGCCCCTATAGGGTAAAATA
1 GACCGTAATGCCCCTATAGGGTAAAA-A
*
42203448 -ACCGTAATGCCCCTAGAGGGTAAA
1 GACCGTAATGCCCCTATAGGGTAAA
42203472 TGATTATTTT
Statistics
Matches: 142, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
27 141 0.99
28 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (27 bp):
GACCGTAATGCCCCTATAGGGTAAAAA
Found at i:42203518 original size:24 final size:26
Alignment explanation
Indices: 42203455--42203530 Score: 95
Period size: 25 Copynumber: 3.0 Consensus size: 26
42203445 ATAACCGTAA
*
42203455 TGCCCCTAGAGGGTAAATGATT-ATTT
1 TGCCCCT-GAGTGTAAATGATTGATTT
42203481 TGCCCCTGAGTGTAAATGATTGATTT
1 TGCCCCTGAGTGTAAATGATTGATTT
* *
42203507 T-CCCTTGA-TGTAAATGACTGATTT
1 TGCCCCTGAGTGTAAATGATTGATTT
42203531 GTCTGTGATT
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
24 15 0.33
25 19 0.41
26 12 0.26
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (26 bp):
TGCCCCTGAGTGTAAATGATTGATTT
Found at i:42203687 original size:27 final size:26
Alignment explanation
Indices: 42203657--42203713 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
42203647 GTTTCTGGTG
*
42203657 GCTTGGCCACATATACTATTACTGGCA
1 GCTTGGCCACA-ATACTATTACTAGCA
* * * *
42203684 GCTTTGCTACAATATTGTTACTAGCA
1 GCTTGGCCACAATACTATTACTAGCA
42203710 GCTT
1 GCTT
42203714 TGTTCCGATG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 16 0.64
27 9 0.36
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.35
Consensus pattern (26 bp):
GCTTGGCCACAATACTATTACTAGCA
Found at i:42203764 original size:32 final size:32
Alignment explanation
Indices: 42203723--42203849 Score: 164
Period size: 32 Copynumber: 4.0 Consensus size: 32
42203713 TTGTTCCGAT
* *
42203723 GTTACTGATGGCTTTGTGCCGATCATATTGCC
1 GTTACTGATGGCTTTGTGCCAATCATATTACC
42203755 GTTACTGATGGCTTTGTGCCAATCATATTACC
1 GTTACTGATGGCTTTGTGCCAATCATATTACC
* * * * * *
42203787 ATTACTGATGACTGTGTGCCGATCATATCACT
1 GTTACTGATGGCTTTGTGCCAATCATATTACC
* *
42203819 GCTACTGATGGCTTTATGCCAATCATATTAC
1 GTTACTGATGGCTTTGTGCCAATCATATTAC
42203850 TGTACTTTTG
Statistics
Matches: 80, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 80 1.00
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (32 bp):
GTTACTGATGGCTTTGTGCCAATCATATTACC
Found at i:42203825 original size:64 final size:64
Alignment explanation
Indices: 42203724--42203849 Score: 189
Period size: 64 Copynumber: 2.0 Consensus size: 64
42203714 TGTTCCGATG
* * ** * *
42203724 TTACTGATGGCTTTGTGCCGATCATATTGCCGTTACTGATGGCTTTGTGCCAATCATATTACCA
1 TTACTGATGACTGTGTGCCGATCATATCACCGCTACTGATGGCTTTATGCCAATCATATTACCA
*
42203788 TTACTGATGACTGTGTGCCGATCATATCACTGCTACTGATGGCTTTATGCCAATCATATTAC
1 TTACTGATGACTGTGTGCCGATCATATCACCGCTACTGATGGCTTTATGCCAATCATATTAC
42203850 TGTACTTTTG
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 55 1.00
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (64 bp):
TTACTGATGACTGTGTGCCGATCATATCACCGCTACTGATGGCTTTATGCCAATCATATTACCA
Found at i:42207442 original size:50 final size:50
Alignment explanation
Indices: 42207367--42207602 Score: 328
Period size: 50 Copynumber: 4.7 Consensus size: 50
42207357 CATTTGGGTA
* *
42207367 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCAAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
*
42207417 GAGAGGTCCCATGTAAGGCCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* * *
42207467 AAGAGGTCCTATGTAAGACCATGTCTGGGACATGGCGATGGCACCGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
*** * * * *
42207517 GAGAGGTCCCCCATAAGACCATGTTTGGGACATGGCATGGGCACCGATAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
**
42207567 GAGAACATCCCATGTAAGACCATGTCTGGGACATGG
1 GAG-AGGTCCCATGTAAGACCATGTCTGGGACATGG
42207603 ATTTGGCATG
Statistics
Matches: 162, Mismatches: 23, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 136 0.84
51 26 0.16
ACGTcount: A:0.26, C:0.22, G:0.32, T:0.20
Consensus pattern (50 bp):
GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
Found at i:42208304 original size:50 final size:50
Alignment explanation
Indices: 42208229--42208470 Score: 306
Period size: 50 Copynumber: 4.8 Consensus size: 50
42208219 CATTTGGGTA
* * *
42208229 GAGAGGTCCCATGTAAGACTATGTCTGGGACATGGCGTTGGCACCGAGAC
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* *
42208279 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTTGCACTGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* * *
42208329 AAGAGGTCCTATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* *** * * *
42208379 GAGAGGCCCCCCATAAGACCATGTTTGGGACAT-GCATGGGCACCGATAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
** *
42208428 GAGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGC
1 GAG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGC
42208471 TTGTTATTAT
Statistics
Matches: 161, Mismatches: 29, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
49 16 0.10
50 139 0.86
51 6 0.04
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.21
Consensus pattern (50 bp):
GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
Found at i:42222214 original size:47 final size:45
Alignment explanation
Indices: 42222097--42222215 Score: 143
Period size: 47 Copynumber: 2.6 Consensus size: 45
42222087 NNNAATGGAT
* * *
42222097 GTGAT-GATGTGAAAGTGTATATATGTG-ATGGCCTAATGGCCGA
1 GTGATGGATGTGAAAGTGTATATATGTGAAGGGCCGAATGGCCAA
* * *
42222140 TTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAA
1 GTGATGGATGTGAAAGTGTATATATGTGA-AGGGCCGAATGGCCAA
*
42222186 CGTGATGGATGTGAAAGTGTATAAATGTGA
1 -GTGATGGATGTGAAAGTGTATATATGTGA
42222216 TAAGTCCCGA
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
43 4 0.06
44 21 0.33
46 12 0.19
47 26 0.41
ACGTcount: A:0.30, C:0.08, G:0.33, T:0.29
Consensus pattern (45 bp):
GTGATGGATGTGAAAGTGTATATATGTGAAGGGCCGAATGGCCAA
Found at i:42224502 original size:40 final size:40
Alignment explanation
Indices: 42224447--42224843 Score: 598
Period size: 40 Copynumber: 9.9 Consensus size: 40
42224437 CTCGACGAAG
42224447 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
42224487 ATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
42224527 ACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
42224567 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
42224607 ACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
42224647 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
42224687 ATCCGGACTAAGTCCCAAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
42224727 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * * *
42224767 ATCCGTGCTAA-ACCTCGAAGAGCATTCATGCTGGTGTTAT
1 ATCCGGGCTAAGTCC-CGAAGAGCATTCATGCTAGTGATGT
* * *
42224807 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
42224844 CGTGTATTCG
Statistics
Matches: 323, Mismatches: 32, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
39 1 0.00
40 320 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:42228325 original size:47 final size:47
Alignment explanation
Indices: 42228256--42228902 Score: 1033
Period size: 47 Copynumber: 13.6 Consensus size: 47
42228246 GATAATTGTG
* *
42228256 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
42228303 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
42228350 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
42228397 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGA--TGTGATGA
42228448 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
42228497 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
42228544 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
42228591 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
42228638 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
42228687 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
42228736 ATGTGAAAGTGTATATATGTGATAAAGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
42228783 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
42228830 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
42228877 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
42228903 TCCCGAAGGG
Statistics
Matches: 564, Mismatches: 30, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
47 376 0.67
49 139 0.25
51 49 0.09
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:42228807 original size:239 final size:240
Alignment explanation
Indices: 42228256--42228902 Score: 1174
Period size: 239 Copynumber: 2.7 Consensus size: 240
42228246 GATAATTGTG
* * *
42228256 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
*
42228321 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
66 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
42228386 CAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGTGATGAATG
131 CAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA-GTGTGATGAATG
42228451 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
195 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
42228497 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
42228562 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
66 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
42228627 CAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA-TGTGATGAATGT
131 CAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAGTGTGATGAATGT
42228691 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
196 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
42228736 ATGTGAAAGTGTATATATGTGATAAAGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
* * *
42228801 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGC
66 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
* *
42228866 CAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
131 CAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
42228903 TCCCGAAGGG
Statistics
Matches: 396, Mismatches: 10, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
237 10 0.03
238 1 0.00
239 207 0.52
241 178 0.45
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (240 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
CAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAGTGTGATGAATGT
GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:42245040 original size:20 final size:20
Alignment explanation
Indices: 42245015--42245069 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
42245005 ACGAGTTAAA
* *
42245015 TTGAGCTTGAATGAGCTGAC
1 TTGAGCTCGAATGAGCTAAC
*
42245035 TTGAGCACGAATGAGCTAAC
1 TTGAGCTCGAATGAGCTAAC
42245055 TTGAGCTCGAATGAG
1 TTGAGCTCGAATGAG
42245070 TTGAACCACA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (20 bp):
TTGAGCTCGAATGAGCTAAC
Found at i:42247610 original size:15 final size:14
Alignment explanation
Indices: 42247590--42247623 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
42247580 TGAATACAAA
42247590 TTTTTTTTT-GAAAT
1 TTTTTTTTTCG-AAT
42247604 TTTTTTTTTCGAAT
1 TTTTTTTTTCGAAT
42247618 TTTTTT
1 TTTTTT
42247624 CCTTTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 18 0.95
15 1 0.05
ACGTcount: A:0.15, C:0.03, G:0.06, T:0.76
Consensus pattern (14 bp):
TTTTTTTTTCGAAT
Found at i:42247623 original size:13 final size:13
Alignment explanation
Indices: 42247587--42247611 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
42247577 AATTGAATAC
42247587 AAATTTTTTTTTG
1 AAATTTTTTTTTG
42247600 AAATTTTTTTTT
1 AAATTTTTTTTT
42247612 TCGAATTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (13 bp):
AAATTTTTTTTTG
Found at i:42248997 original size:56 final size:56
Alignment explanation
Indices: 42248892--42248998 Score: 144
Period size: 56 Copynumber: 1.9 Consensus size: 56
42248882 ATTAATGTCG
* * * * *
42248892 TCCATGCATGGTGAATATCTCATTTAATTCATGTTTTGCTTCCCTTTAAATGCCGT
1 TCCATACATGGTGAACATCTCATTTAATTCATGTTTTGCTGCACATTAAATGCCGT
*
42248948 TCCATACATGG-GAACATCTCATTTAATTTATGTCTTTGCTGCACATTAAAT
1 TCCATACATGGTGAACATCTCATTTAATTCATGT-TTTGCTGCACATTAAAT
42248999 CAGCAAGCAG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
55 20 0.45
56 24 0.55
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.41
Consensus pattern (56 bp):
TCCATACATGGTGAACATCTCATTTAATTCATGTTTTGCTGCACATTAAATGCCGT
Found at i:42249656 original size:20 final size:20
Alignment explanation
Indices: 42249631--42249677 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
42249621 AATTGTGCTT
*
42249631 GAATGAGCTGACTTGAGCAC
1 GAATGAGCTAACTTGAGCAC
*
42249651 GAATGAGCTAACTTGAGCTC
1 GAATGAGCTAACTTGAGCAC
42249671 GAATGAG
1 GAATGAG
42249678 TTGAACCACA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.32, C:0.17, G:0.30, T:0.21
Consensus pattern (20 bp):
GAATGAGCTAACTTGAGCAC
Found at i:42263502 original size:20 final size:19
Alignment explanation
Indices: 42263440--42263496 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
42263430 TTATTAACTG
*
42263440 ACTACTAACAAA-TCACTAA
1 ACTACTAACAAATTC-TTAA
*
42263459 CAGCTACTAACAATTTCTTAA
1 -A-CTACTAACAAATTCTTAA
42263480 ACTACTAACAAATTCTT
1 ACTACTAACAAATTCTT
42263497 TGAACTGATT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
19 15 0.47
20 2 0.06
21 13 0.41
22 2 0.06
ACGTcount: A:0.44, C:0.25, G:0.02, T:0.30
Consensus pattern (19 bp):
ACTACTAACAAATTCTTAA
Found at i:42263623 original size:27 final size:27
Alignment explanation
Indices: 42263593--42263679 Score: 111
Period size: 27 Copynumber: 3.2 Consensus size: 27
42263583 GCAATGATAA
*
42263593 CCTTTGTGGCAAAACATGAAACAAAAG
1 CCTTTGTGGCAAAACATGAAAGAAAAG
* * *
42263620 CCTTTGTGACAAACCATGAAAGAAAAA
1 CCTTTGTGGCAAAACATGAAAGAAAAG
* * *
42263647 CCTTTATGGCAAAATATAAAAGAAAAG
1 CCTTTGTGGCAAAACATGAAAGAAAAG
42263674 CCTTTG
1 CCTTTG
42263680 CGGTGAATTA
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.45, C:0.17, G:0.16, T:0.22
Consensus pattern (27 bp):
CCTTTGTGGCAAAACATGAAAGAAAAG
Done.