Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 143 of 240
Found at i:44836206 original size:335 final size:335
Alignment explanation
Indices: 44835596--44837598 Score: 3510
Period size: 335 Copynumber: 6.0 Consensus size: 335
44835586 GCTTTCAGAT
*
44835596 TTTTGGCAAAAGTGTATTTCTGGTGAGTGTTTTGGAATCACTACTTGTAGATGATTCATTGTGTA
1 TTTTGGCGAAAGTGTATTTCTGGTGAGTGTTTTGGAATCACTACTTGTAGATGATTCATTGTGTA
**
44835661 TTGGGAATTTTTAGAGGCAGCTTAAACTCCTACTCTAAATTTCAAGAGTAAGTGTTGTCACGCCT
66 TTGGGAATTTTTAGAGGCAGCTTAAACTCCTACTCTAAATTTTGAGAGTAAGTGTTGTCACGCCT
* * *
44835726 ATGATTAAATGTAATATATGTATGCTTGCGAAATTATGAAATTA-TGAAATTGTGAACATATATG
131 ATGATTAAATGTGATATATGTATGCTTGTGAAATTATGAAA-TAGTGAAATTATGAACATATATG
*
44835790 AGATGCTATGACATATGTTATAAGCTGATGATGACTGATTTGAAAGTGAATATGAGGGTGTGTTG
195 AGATGCTATGACATATGTTATAAGCTTATGATGACTGATTTGAAAGTGAATATGAGGGTGTGTTG
44835855 TCCATGCCATGTGATAGTAAATATGTGGGTATGTTATTCATGCCTTGTGAAAGTGTTTATAATGT
260 TCCATGCCATGTGATAGTAAATATGTGGGTATGTTATTCATGCCTTGTGAAAGTGTTTATAATGT
44835920 GCTACTCTAAA
325 GCTACTCTAAA
* * *
44835931 TTTTGGCGAAAGTGTATTTCTAGTGCGTGTTTTGGAATCACTACATGTAGATGATTCATTGTGTA
1 TTTTGGCGAAAGTGTATTTCTGGTGAGTGTTTTGGAATCACTACTTGTAGATGATTCATTGTGTA
44835996 TTGGGAATTTTTAGAGGCAGCTTAAACTCCTACTCTAAATTTTGAGAGTAAGTGTTGTCACGCCT
66 TTGGGAATTTTTAGAGGCAGCTTAAACTCCTACTCTAAATTTTGAGAGTAAGTGTTGTCACGCCT
*
44836061 ATGATTAAGTGTGATATATGTATGCTTGTGAAATTATGAAATAGTGAAATTATGAACATATATGA
131 ATGATTAAATGTGATATATGTATGCTTGTGAAATTATGAAATAGTGAAATTATGAACATATATGA
* *
44836126 GATGCTATGACATATGTTATAAGCTTATAATGACTGGTTTGAAAGTGAATATGAGGGTGTGTT-T
196 GATGCTATGACATATGTTATAAGCTTATGATGACTGATTTGAAAGTGAATATGAGGGTGTGTTGT
44836190 CCCATGCCATGTGATAGTAAATATGTGGGTATGTTATTCATGCCTTGTGAAAGTGTTTATAATGT
261 -CCATGCCATGTGATAGTAAATATGTGGGTATGTTATTCATGCCTTGTGAAAGTGTTTATAATGT
44836255 GCTACTCTAAA
325 GCTACTCTAAA
* *
44836266 TTTAGGCGAAACTGTATTTCTGGTGAGTGTTTTGGAATCACTACTTGTAGATGATTCATTGTGTA
1 TTTTGGCGAAAGTGTATTTCTGGTGAGTGTTTTGGAATCACTACTTGTAGATGATTCATTGTGTA
*
44836331 TTGGGAATTTTTAGAGGTAGCTTAAACTCCTACTCTAAATTTTGAGAGTAAGTGTTGTCACGCCT
66 TTGGGAATTTTTAGAGGCAGCTTAAACTCCTACTCTAAATTTTGAGAGTAAGTGTTGTCACGCCT
* *
44836396 ATGATTAAGTGTGATATATGTATGCTTGTGAAATTATGAAATTGTGAAATTATGAACATATATGA
131 ATGATTAAATGTGATATATGTATGCTTGTGAAATTATGAAATAGTGAAATTATGAACATATATGA
* *
44836461 GATGCTATGACATATGTTATAAGCTTATAATGACTGGTTTGAAAGTGAATATGAGGGTGTGTT-T
196 GATGCTATGACATATGTTATAAGCTTATGATGACTGATTTGAAAGTGAATATGAGGGTGTGTTGT
*
44836525 CCCATGCCATGTGATAGTAAATATGTGGGTATGTTATTCATGCCTTGTGGAAGTGTTTATAATGT
261 -CCATGCCATGTGATAGTAAATATGTGGGTATGTTATTCATGCCTTGTGAAAGTGTTTATAATGT
44836590 GCTACTCTAAA
325 GCTACTCTAAA
* * *
44836601 TTTAGGCGAAAGTGTATTTCTGGTGAGTGTTTTGGAATCATTACTTGTACATGATTCATTGTGTA
1 TTTTGGCGAAAGTGTATTTCTGGTGAGTGTTTTGGAATCACTACTTGTAGATGATTCATTGTGTA
* *
44836666 TTGGGAATTTTTAGAGGAAGCTTAAACTCCTACTCTAAATTTTGAGAGTAAGTGTTGTCACCCCT
66 TTGGGAATTTTTAGAGGCAGCTTAAACTCCTACTCTAAATTTTGAGAGTAAGTGTTGTCACGCCT
*
44836731 ATGATTAAATGTGATATATGTATGCTTGTGAAATTATGAAATTGTGAAATTATGAACATATATGA
131 ATGATTAAATGTGATATATGTATGCTTGTGAAATTATGAAATAGTGAAATTATGAACATATATGA
* *
44836796 GATGCTATGACATATTTTATAACCTTATGATGACTGATTTGAAAGTGAATATGAGGGTGTGTTGT
196 GATGCTATGACATATGTTATAAGCTTATGATGACTGATTTGAAAGTGAATATGAGGGTGTGTTGT
*
44836861 CCATGCCATGTGATAGTAAATATGTTGGTATGTTATTCATGCCTTGTGAAAGTGTTTATAATGTG
261 CCATGCCATGTGATAGTAAATATGTGGGTATGTTATTCATGCCTTGTGAAAGTGTTTATAATGTG
44836926 CTACTCTAAA
326 CTACTCTAAA
*
44836936 TTTTGGCGAAAGTGTATTTTTGGTGAGTGTTTTGGAATCACTACTTGTAGATGATTCATTGTGTA
1 TTTTGGCGAAAGTGTATTTCTGGTGAGTGTTTTGGAATCACTACTTGTAGATGATTCATTGTGTA
*
44837001 TTGGGAATTTTTAGAGGCAGCTTAAACTCCTACTCTAAATTTCGAGAGTAAGTGTTGTCACGCCT
66 TTGGGAATTTTTAGAGGCAGCTTAAACTCCTACTCTAAATTTTGAGAGTAAGTGTTGTCACGCCT
*
44837066 ATGATTAAATGTGATATATGTATGCTTGTGAAATTATGAAATTA-TGAAATTGTGAACATATATG
131 ATGATTAAATGTGATATATGTATGCTTGTGAAATTATGAAA-TAGTGAAATTATGAACATATATG
*
44837130 AGATGCTATGACATATGTTATAAGCTAATGATGACTGATTTGAAAGTGAATATGAGGGTGTGTTG
195 AGATGCTATGACATATGTTATAAGCTTATGATGACTGATTTGAAAGTGAATATGAGGGTGTGTTG
*
44837195 TCCATGCCATGTGATAGTAAATATGTGGGTATGTTATTTATGCCTTGTGAAAGTGTTTATAATGT
260 TCCATGCCATGTGATAGTAAATATGTGGGTATGTTATTCATGCCTTGTGAAAGTGTTTATAATGT
*
44837260 GCTACTTTAAA
325 GCTACTCTAAA
* *
44837271 TTTTGGCGAAAGTGTATTTCTAGTGAGTGTTTTGGAATCACTACTTGTAGATGATTTATTGTGTA
1 TTTTGGCGAAAGTGTATTTCTGGTGAGTGTTTTGGAATCACTACTTGTAGATGATTCATTGTGTA
* * *
44837336 TTGGGAATTTTTAGCGGTAGCTTAAAATCCTACTCTAAATTTTGAGAGTAAGTGTTGTCACGCCT
66 TTGGGAATTTTTAGAGGCAGCTTAAACTCCTACTCTAAATTTTGAGAGTAAGTGTTGTCACGCCT
* * * *
44837401 ATGATTAAATGTGATATATGTATGCTTATGAAATTATGAAGTTGTGAAATTATTAACATATATGA
131 ATGATTAAATGTGATATATGTATGCTTGTGAAATTATGAAATAGTGAAATTATGAACATATATGA
* *
44837466 GATGCTATGACATATGTTATAATCTTATGATGACTGATTTGAAAGTAAATATGAGGGTGTGTTGT
196 GATGCTATGACATATGTTATAAGCTTATGATGACTGATTTGAAAGTGAATATGAGGGTGTGTTGT
*
44837531 TCATGCCATGTGATAGTAAATATGTGGGTATGTTATTCATGCCTTGTGAAAGTGTTTATAATGTG
261 CCATGCCATGTGATAGTAAATATGTGGGTATGTTATTCATGCCTTGTGAAAGTGTTTATAATGTG
44837596 CTA
326 CTA
44837599 ATGAGGTGAA
Statistics
Matches: 1598, Mismatches: 65, Indels: 10
0.96 0.04 0.01
Matches are distributed among these distances:
334 4 0.00
335 1592 1.00
336 2 0.00
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.38
Consensus pattern (335 bp):
TTTTGGCGAAAGTGTATTTCTGGTGAGTGTTTTGGAATCACTACTTGTAGATGATTCATTGTGTA
TTGGGAATTTTTAGAGGCAGCTTAAACTCCTACTCTAAATTTTGAGAGTAAGTGTTGTCACGCCT
ATGATTAAATGTGATATATGTATGCTTGTGAAATTATGAAATAGTGAAATTATGAACATATATGA
GATGCTATGACATATGTTATAAGCTTATGATGACTGATTTGAAAGTGAATATGAGGGTGTGTTGT
CCATGCCATGTGATAGTAAATATGTGGGTATGTTATTCATGCCTTGTGAAAGTGTTTATAATGTG
CTACTCTAAA
Found at i:44836442 original size:16 final size:16
Alignment explanation
Indices: 44836421--44836451 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
44836411 ATATGTATGC
44836421 TTGTGAAATTATGAAA
1 TTGTGAAATTATGAAA
44836437 TTGTGAAATTATGAA
1 TTGTGAAATTATGAA
44836452 CATATATGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39
Consensus pattern (16 bp):
TTGTGAAATTATGAAA
Found at i:44836777 original size:16 final size:16
Alignment explanation
Indices: 44836756--44836786 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
44836746 ATATGTATGC
44836756 TTGTGAAATTATGAAA
1 TTGTGAAATTATGAAA
44836772 TTGTGAAATTATGAA
1 TTGTGAAATTATGAA
44836787 CATATATGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39
Consensus pattern (16 bp):
TTGTGAAATTATGAAA
Found at i:44837549 original size:36 final size:36
Alignment explanation
Indices: 44837509--44837579 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
44837499 CTGATTTGAA
* *
44837509 AGTAAATATGAGGGTGTGTTGTTCATGCCATGTGAT
1 AGTAAATATGAGGGTATGTTATTCATGCCATGTGAT
* *
44837545 AGTAAATATGTGGGTATGTTATTCATGCCTTGTGA
1 AGTAAATATGAGGGTATGTTATTCATGCCATGTGA
44837580 AAGTGTTTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.25, C:0.08, G:0.28, T:0.38
Consensus pattern (36 bp):
AGTAAATATGAGGGTATGTTATTCATGCCATGTGAT
Found at i:44840843 original size:40 final size:40
Alignment explanation
Indices: 44840799--44840896 Score: 124
Period size: 40 Copynumber: 2.5 Consensus size: 40
44840789 AATTTCCAGA
* * *
44840799 AATGTGGACAAGCCACTAGTATTGTAGACGAGCTAACAAT
1 AATGTGGACAAGCCACCAGTAATGTAGACAAGCTAACAAT
* * *
44840839 AATGTGGACAGGCCACCAGTAATGTAGACAAGCTACCAGT
1 AATGTGGACAAGCCACCAGTAATGTAGACAAGCTAACAAT
* *
44840879 ATTATGGACAAGCCACCA
1 AATGTGGACAAGCCACCA
44840897 AAATTGAAGA
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.19
Consensus pattern (40 bp):
AATGTGGACAAGCCACCAGTAATGTAGACAAGCTAACAAT
Found at i:44840863 original size:20 final size:20
Alignment explanation
Indices: 44840794--44840896 Score: 89
Period size: 20 Copynumber: 5.2 Consensus size: 20
44840784 AGATAAATTT
*
44840794 CCAGAAATGTGGACAAGCCA
1 CCAGTAATGTGGACAAGCCA
* * * * *
44840814 CTAGTATTGTAGACGAGCTA
1 CCAGTAATGTGGACAAGCCA
* * *
44840834 ACAATAATGTGGACAGGCCA
1 CCAGTAATGTGGACAAGCCA
* *
44840854 CCAGTAATGTAGACAAGCTA
1 CCAGTAATGTGGACAAGCCA
* *
44840874 CCAGTATTATGGACAAGCCA
1 CCAGTAATGTGGACAAGCCA
44840894 CCA
1 CCA
44840897 AAATTGAAGA
Statistics
Matches: 60, Mismatches: 23, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
20 60 1.00
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.18
Consensus pattern (20 bp):
CCAGTAATGTGGACAAGCCA
Found at i:44845720 original size:20 final size:21
Alignment explanation
Indices: 44845683--44845721 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
44845673 ACATTGACTA
44845683 GCTGAATGGACAAGCAAAAAT
1 GCTGAATGGACAAGCAAAAAT
*
44845704 GCTGAATGGTC-AGCAAAA
1 GCTGAATGGACAAGCAAAA
44845722 TTAAAGCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.44, C:0.15, G:0.26, T:0.15
Consensus pattern (21 bp):
GCTGAATGGACAAGCAAAAAT
Found at i:44852038 original size:28 final size:28
Alignment explanation
Indices: 44852007--44852062 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
44851997 TATGCTGTGA
44852007 AAGATTGAGATCTGATTTATCTGATATC
1 AAGATTGAGATCTGATTTATCTGATATC
*
44852035 AAGATTGAGATTTGATTTATCTGATATC
1 AAGATTGAGATCTGATTTATCTGATATC
44852063 TGTCACCAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (28 bp):
AAGATTGAGATCTGATTTATCTGATATC
Found at i:44858524 original size:18 final size:18
Alignment explanation
Indices: 44858473--44858530 Score: 59
Period size: 18 Copynumber: 3.2 Consensus size: 18
44858463 TCTCTTTCAA
44858473 TTTCTTTTTCA-ATCTCT
1 TTTCTTTTTCACATCTCT
44858490 TTT-TGCTTTTCAC-TCTCT
1 TTTCT--TTTTCACATCTCT
*
44858508 TTTCTTTTTGACATCTCAT
1 TTTCTTTTTCACATCTC-T
44858527 TTTC
1 TTTC
44858531 ATCTTTTCCT
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
16 1 0.03
17 9 0.26
18 18 0.53
19 6 0.18
ACGTcount: A:0.10, C:0.24, G:0.03, T:0.62
Consensus pattern (18 bp):
TTTCTTTTTCACATCTCT
Found at i:44862020 original size:269 final size:270
Alignment explanation
Indices: 44861535--44862345 Score: 1218
Period size: 270 Copynumber: 3.0 Consensus size: 270
44861525 ATCTAAGGTC
* * ** * * * *
44861535 AAAAAATTTATTTTATCACTACGTTATTGCCAACAACATGATAGTCATACCATATAAAATTTTTG
1 AAAAAA-TTATTTTATTATTATTTTATTGCCTACAACATGATAGTAATACCGTATAAAATTTTCG
*
44861600 TTAA-AAATTTTACCGTTTACATGTTCAATTT-ACTAAAAAGGACTAAATCACGT-AAGTGCAAA
65 TTAAGAAATTTTACCGTTTACATGCTCAATTTGA-TAAAAAGGACTAAATCACGTAAAGTGCAAA
44861662 AGTTGAGTTCTAGTAGCTAAAGGTATTAAATAACTATAGAACCTTAAAGTAAGAGTCCTTATGTG
129 AGTTGAGTTCTAGTAGCTAAAGGTATTAAATAACTATAGAACCTTAAAGTAAGAGTCCTTATGTG
* * *
44861727 GTAATTAGACCACTAATTGTGATAGTGGAATATGATGGCTTGGTAATATTGAAAATTG-AATATT
194 GTAATTAGAACACTAATGGTGATAGTGGAATATGATGGCTTGGTAATATTGAAATTTGTAATATT
44861791 TTAAAAGGTTAT
259 TTAAAAGGTTAT
* * *
44861803 AAAAAATTATTTTATTGTTATTTTATTACCTACAACATGATAGTAATATCGTATAAAATTTTCGT
1 AAAAAATTATTTTATTATTATTTTATTGCCTACAACATGATAGTAATACCGTATAAAATTTTCGT
* *
44861868 TAAGAAATTTTACCGTTTACATGCTCAATTTGATAAAAAAGACTATATCACGTAAAGTGCAAAAG
66 TAAGAAATTTTACCGTTTACATGCTCAATTTGATAAAAAGGACTAAATCACGTAAAGTGCAAAAG
* * * *
44861933 TTGAGTTCTAGTAGCTAAAGATATTAAATAATTATAGATCCTTAAAGTAAGAGTCCTTCTGTGGT
131 TTGAGTTCTAGTAGCTAAAGGTATTAAATAACTATAGAACCTTAAAGTAAGAGTCCTTATGTGGT
*
44861998 AATTAGAACACTAATGGTGATAGTGGAATATGACGGCTTGGTAATATTGAAATTTGTAATATTTT
196 AATTAGAACACTAATGGTGATAGTGGAATATGATGGCTTGGTAATATTGAAATTTGTAATATTTT
44862063 AAAAGGTTAT
261 AAAAGGTTAT
* * *
44862073 AAAAATTTATTTTATTATTATTTTATTGCCTACAACATGATAGTAATACCGTATTAAATTTTCCT
1 AAAAAATTATTTTATTATTATTTTATTGCCTACAACATGATAGTAATACCGTATAAAATTTTCGT
* * *
44862138 AAAGAAATTTTACCGTTTACATGCTCAATTTGGTACAAAGGACTAAATCACGTAAAGTGCAAAAG
66 TAAGAAATTTTACCGTTTACATGCTCAATTTGATAAAAAGGACTAAATCACGTAAAGTGCAAAAG
* * * * *
44862203 TAGAGTTGTAGTAGCTCAAGGTATTAAATAACTATAGAACCTTAAAGTAATAGTCCTTATATGGT
131 TTGAGTTCTAGTAGCTAAAGGTATTAAATAACTATAGAACCTTAAAGTAAGAGTCCTTATGTGGT
* * * * * *
44862268 AATAAGATCGCTAATGTTGATAGTGAAATATGAT-GCTTGATAATATTGAAATTTGTAATATTTT
196 AATTAGAACACTAATGGTGATAGTGGAATATGATGGCTTGGTAATATTGAAATTTGTAATATTTT
44862332 AAAAGGTTAT
261 AAAAGGTTAT
44862342 AAAA
1 AAAA
44862346 GTAAATTAAT
Statistics
Matches: 490, Mismatches: 49, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
267 51 0.10
268 50 0.10
269 168 0.34
270 221 0.45
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (270 bp):
AAAAAATTATTTTATTATTATTTTATTGCCTACAACATGATAGTAATACCGTATAAAATTTTCGT
TAAGAAATTTTACCGTTTACATGCTCAATTTGATAAAAAGGACTAAATCACGTAAAGTGCAAAAG
TTGAGTTCTAGTAGCTAAAGGTATTAAATAACTATAGAACCTTAAAGTAAGAGTCCTTATGTGGT
AATTAGAACACTAATGGTGATAGTGGAATATGATGGCTTGGTAATATTGAAATTTGTAATATTTT
AAAAGGTTAT
Found at i:44863364 original size:25 final size:25
Alignment explanation
Indices: 44863336--44863401 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
44863326 CCGTATGAGT
* *
44863336 ATACCGATTTATAGCTCGTGAGAGC
1 ATACCAATTTATAGCTCGAGAGAGC
*
44863361 ATACCAATCTT-TAGCTCGAGTGAGC
1 ATACCAAT-TTATAGCTCGAGAGAGC
*
44863386 ATACCAATTCATAGCT
1 ATACCAATTTATAGCT
44863402 TGTATAAGCA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
24 1 0.03
25 32 0.91
26 2 0.06
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (25 bp):
ATACCAATTTATAGCTCGAGAGAGC
Found at i:44864032 original size:29 final size:29
Alignment explanation
Indices: 44863990--44864050 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
44863980 ATTGGGATAT
* *
44863990 GCTTGTATATGTAATCACACTATCCATTG
1 GCTTATATATGTAATCACACTATCCATCG
44864019 GCTTATATATGTAATCACACTATCCATCG
1 GCTTATATATGTAATCACACTATCCATCG
44864048 GCT
1 GCT
44864051 CTTTTGGTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (29 bp):
GCTTATATATGTAATCACACTATCCATCG
Found at i:44874197 original size:29 final size:29
Alignment explanation
Indices: 44874162--44874591 Score: 531
Period size: 29 Copynumber: 14.8 Consensus size: 29
44874152 GATGGTCAAA
*
44874162 ACCATCCCTTTTCATATTCGATGGTGGTC
1 ACCATCCCTTTTCATATTCGATGGTCGTC
* **
44874191 ACTATCCCTTTTCATATTCGATGGTTATC
1 ACCATCCCTTTTCATATTCGATGGTCGTC
*
44874220 ACCATCCCTTCTCATATTCGATGGTCGTC
1 ACCATCCCTTTTCATATTCGATGGTCGTC
* *
44874249 ACCATCCCTTTCCATATTTGATGGTCGTC
1 ACCATCCCTTTTCATATTCGATGGTCGTC
** **
44874278 ACCATCTTTTTTCATATTCGATGGTCGAA
1 ACCATCCCTTTTCATATTCGATGGTCGTC
* *
44874307 ACCATCCCTTTTCATGTTCGATGGTC-TAA
1 ACCATCCCTTTTCATATTCGATGGTCGT-C
** *
44874336 ATTATCCCTTTTCATATTCGATGGTCATC
1 ACCATCCCTTTTCATATTCGATGGTCGTC
* * *
44874365 ACCATCCCTTTTCATATTCGGTGTTTGTC
1 ACCATCCCTTTTCATATTCGATGGTCGTC
*
44874394 ACCATCCCTTTTCATATTCGATGGTTGTC
1 ACCATCCCTTTTCATATTCGATGGTCGTC
* ***
44874423 ACCATCCCTTTTCGTATTCGATGGTCAAA
1 ACCATCCCTTTTCATATTCGATGGTCGTC
* **
44874452 ACCATCCCTTTTCATATTTGATGGTCGAA
1 ACCATCCCTTTTCATATTCGATGGTCGTC
**
44874481 ACCATCCCTTTTCATATTCGATGGTCGAA
1 ACCATCCCTTTTCATATTCGATGGTCGTC
* *
44874510 ACTATCCCTTTTCATATTCGATGGTCATC
1 ACCATCCCTTTTCATATTCGATGGTCGTC
* *
44874539 ACCATCCC-TTTCAATATTTGATGGTTGTC
1 ACCATCCCTTTTC-ATATTCGATGGTCGTC
44874568 ACCATCCCTTTTCATATTCGATGG
1 ACCATCCCTTTTCATATTCGATGG
44874592 GCATAGATAT
Statistics
Matches: 347, Mismatches: 50, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
28 4 0.01
29 338 0.97
30 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.13, T:0.40
Consensus pattern (29 bp):
ACCATCCCTTTTCATATTCGATGGTCGTC
Found at i:44880212 original size:20 final size:20
Alignment explanation
Indices: 44880187--44880230 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
44880177 ATCAACTACA
44880187 TGTTAGTCTTAATGCATTAT
1 TGTTAGTCTTAATGCATTAT
44880207 TGTTAGTCTTAATGCATTAT
1 TGTTAGTCTTAATGCATTAT
44880227 TGTT
1 TGTT
44880231 GTCCTACCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.23, C:0.09, G:0.16, T:0.52
Consensus pattern (20 bp):
TGTTAGTCTTAATGCATTAT
Found at i:44883867 original size:16 final size:16
Alignment explanation
Indices: 44883846--44883877 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
44883836 ATTTTGTTGC
*
44883846 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
44883862 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
44883878 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:44884163 original size:51 final size:51
Alignment explanation
Indices: 44884095--44884295 Score: 239
Period size: 51 Copynumber: 4.0 Consensus size: 51
44884085 ATTAATGATA
* *
44884095 CTGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTAT
1 CTGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCACTAT
* * * * *
44884146 CCGATACATGTAGTAGCCTGCACATAGTACTACACACGTGATCGA--AGCTAT
1 CTGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGA-CCATCA-CTAT
* * *
44884197 CTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-T
1 CTGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACC-ATCACTAT
* *
44884247 CTGGTACACGTAGTAGCTTGCACATAGTTCTACACATGTGACCATCACT
1 CTGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCACT
44884296 TTCACTTTCA
Statistics
Matches: 124, Mismatches: 20, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
49 4 0.03
50 42 0.34
51 75 0.60
52 2 0.02
53 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (51 bp):
CTGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCACTAT
Found at i:44884310 original size:101 final size:102
Alignment explanation
Indices: 44884098--44884321 Score: 249
Period size: 101 Copynumber: 2.2 Consensus size: 102
44884088 AATGATACTG
* *
44884098 GTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACATGTAGTAGC
1 GTTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGC
* **
44884163 CTGCACATAGTACTACACACGTGATCGAAGCTATCTG
66 CTGCACATAGTACTACACACGTGATCCAAGCTATCAC
* * * *
44884200 GTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACGTAGTAG
1 GTTCACATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATCCGATACACGTAGTAG
* * * *
44884263 CTTGCACATAGTTCTACACATGTGA-CCATCA-CTTTCAC
65 CCTGCACATAGTACTACACACGTGATCCA--AGCTATCAC
* * *
44884301 TTTCACATAGTGGCCTACACA
1 GTTCACATAGTAGCCTGCACA
44884322 CAGTCCATGC
Statistics
Matches: 101, Mismatches: 18, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
100 2 0.02
101 56 0.55
102 39 0.39
103 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (102 bp):
GTTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGC
CTGCACATAGTACTACACACGTGATCCAAGCTATCAC
Found at i:44889127 original size:23 final size:23
Alignment explanation
Indices: 44889101--44889153 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
44889091 ATAAGTGCCA
*
44889101 CACTGATATGTAGCTAAAGCTAC
1 CACTGATATGTAGCCAAAGCTAC
*
44889124 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCAAAGCTAC
44889147 CACTGAT
1 CACTGAT
44889154 CAATAACACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (23 bp):
CACTGATATGTAGCCAAAGCTAC
Found at i:44913262 original size:25 final size:25
Alignment explanation
Indices: 44913234--44913286 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
44913224 AAAAAAAACA
* **
44913234 TGTGTGAATTTGTTCTAAGGTTTAT
1 TGTGTGAATTCGTTCTAAAATTTAT
44913259 TGTGTGAATTCGTTCTAAAATTTAT
1 TGTGTGAATTCGTTCTAAAATTTAT
44913284 TGT
1 TGT
44913287 TATAAATATC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.23, C:0.06, G:0.21, T:0.51
Consensus pattern (25 bp):
TGTGTGAATTCGTTCTAAAATTTAT
Found at i:44915107 original size:152 final size:150
Alignment explanation
Indices: 44914818--44915453 Score: 963
Period size: 152 Copynumber: 4.2 Consensus size: 150
44914808 CAATTATTCG
* * * * *
44914818 TATTTTGGCCATTTGTTCGTATTTTTTCCCGGATTTTATTACTTTTAAAAAATATACTATTTTTT
1 TATTTCGGCCATTTGTTCGTATTTTTTCCCAGATTTTATTACTTTAAAAAAATATATTATTTTCT
* * *
44914883 AATTTTTTTTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTATTGTGTTCTT
66 AA-TTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTT-TT
* *
44914948 TTAAATAAATTGAAAAAATCCT
129 TTAAATAAATTTAAAAAAACCT
44914970 TATTTCGGCCATTTGTTCGTA-TTTTTCCCTAGATTTTATTACTTTAAATAAAAATATATTATTT
1 TATTTCGGCCATTTGTTCGTATTTTTTCCC-AGATTTTATTACTTT-AA-AAAAATATATTATTT
*
44915034 TCGT-ATTTTATTATTTTACATTATTTTAGTACATCATGTTTGAAATGTATTAATTTACTGTGTT
63 TC-TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTT
44915098 TTTTAAATAAATTTAAAAAAACCT
127 TTTTAAATAAATTTAAAAAAACCT
*
44915122 TATTTCGGCCATTTGTTCGTATTTTTTTCCCCAGAGTTTATTACTTTAAAAAAATATATTATTTT
1 TATTTCGGCCATTTGTTCGTA-TTTTTT-CCCAGATTTTATTACTTTAAAAAAATATATTATTTT
*
44915187 CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATATATTAATTTACTGTGTTTT
64 CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTG-TTT
*
44915252 TTTAAATAAATATAAAAAAAACCT
128 TTTAAATAAAT-TTAAAAAAACCT
* *
44915276 TATTTCGGCCATTTGTTTGTATTTTTTCTCC-GAATTTTATTACTTCAAAAAAATATATTATTTT
1 TATTTCGGCCATTTGTTCGTATTTTTTC-CCAG-ATTTTATTACTTTAAAAAAATATATTATTTT
*
44915340 CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAATGTGTTTT
64 CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTTT
*
44915405 TTAAATAAATTTTAAAAAACCCT
129 TTAAATAAA-TTTAAAAAAACCT
*
44915428 TATTTCGGCCCTTTGTTCGTATTTTT
1 TATTTCGGCCATTTGTTCGTATTTTT
44915454 AAGGGGTTTT
Statistics
Matches: 447, Mismatches: 24, Indels: 26
0.90 0.05 0.05
Matches are distributed among these distances:
151 9 0.02
152 199 0.45
153 169 0.38
154 66 0.15
155 4 0.01
ACGTcount: A:0.31, C:0.10, G:0.08, T:0.52
Consensus pattern (150 bp):
TATTTCGGCCATTTGTTCGTATTTTTTCCCAGATTTTATTACTTTAAAAAAATATATTATTTTCT
AATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTTTTT
AAATAAATTTAAAAAAACCT
Found at i:44915390 original size:305 final size:306
Alignment explanation
Indices: 44914818--44915453 Score: 998
Period size: 305 Copynumber: 2.1 Consensus size: 306
44914808 CAATTATTCG
* * * * *
44914818 TATTTTGGCCATTTGTTCGTA-TTTTTTCCCGGATTTTATTACTTTTAAAAAATATACTATTTTT
1 TATTTCGGCCATTTGTTCGTATTTTTTTCCCAGAGTTTATTACTTTAAAAAAATATACTATTTTC
* * *
44914882 TAATTTTTTTTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTATTGTGTTCT
66 TAATTTTTATTATTTTACATTATTTTAGTACATTATATTTGAAATATATTAATTTACTGTGTTCT
* * *
44914947 TTTAAATAAATTGAAAAAATCCTTATTTCGGCCATTTGTTCGTATTTTTCCCTAGATTTTATTAC
131 TTTAAATAAATTAAAAAAAACCTTATTTCGGCCATTTGTTCGTATTTTTCCCGAGATTTTATTAC
44915012 TTTAAATAAAAATATATTATTTTCGTATTTTATTATTTTACATTATTTTAGTACATCATGTTTGA
196 TTTAAATAAAAATATATTATTTTCGTATTTTATTATTTTACATTATTTTAGTACATCATGTTTGA
*
44915077 AATGTATTAATTTACTGTGTTTTTTAAATAAA-TTTAAAAAAACCT
261 AATGTATTAATTTAATGTGTTTTTTAAATAAATTTTAAAAAAACCT
*
44915122 TATTTCGGCCATTTGTTCGTATTTTTTTCCCCAGAGTTTATTACTTTAAAAAAATATATTATTTT
1 TATTTCGGCCATTTGTTCGTATTTTTTT-CCCAGAGTTTATTACTTTAAAAAAATATACTATTTT
* *
44915187 CTAA-TTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATATATTAATTTACTGTGTTT
65 CTAATTTTTATTATTTTACATTATTTTAGTACATTATATTTGAAATATATTAATTTACTGTGTTC
*
44915251 TTTTAAATAAATATAAAAAAAACCTTATTTCGGCCATTTGTTTGTATTTTTTCTCCGA-ATTTTA
130 TTTTAAATAAAT-TAAAAAAAACCTTATTTCGGCCATTTGTTCGTA-TTTTTC-CCGAGATTTTA
* *
44915315 TTAC-TTCAA-AAAAATATATTATTTTC-TAATTTTATTATTTTACATTATTTTAGTACATTATG
192 TTACTTTAAATAAAAATATATTATTTTCGT-ATTTTATTATTTTACATTATTTTAGTACATCATG
*
44915377 TTTGAAATGTATTAATTTAATGTGTTTTTTAAATAAATTTTAAAAAACCCT
256 TTTGAAATGTATTAATTTAATGTGTTTTTTAAATAAATTTTAAAAAAACCT
*
44915428 TATTTCGGCCCTTTGTTCGTATTTTT
1 TATTTCGGCCATTTGTTCGTATTTTT
44915454 AAGGGGTTTT
Statistics
Matches: 305, Mismatches: 20, Indels: 12
0.91 0.06 0.04
Matches are distributed among these distances:
304 21 0.07
305 159 0.52
306 106 0.35
307 16 0.05
308 3 0.01
ACGTcount: A:0.31, C:0.10, G:0.08, T:0.52
Consensus pattern (306 bp):
TATTTCGGCCATTTGTTCGTATTTTTTTCCCAGAGTTTATTACTTTAAAAAAATATACTATTTTC
TAATTTTTATTATTTTACATTATTTTAGTACATTATATTTGAAATATATTAATTTACTGTGTTCT
TTTAAATAAATTAAAAAAAACCTTATTTCGGCCATTTGTTCGTATTTTTCCCGAGATTTTATTAC
TTTAAATAAAAATATATTATTTTCGTATTTTATTATTTTACATTATTTTAGTACATCATGTTTGA
AATGTATTAATTTAATGTGTTTTTTAAATAAATTTTAAAAAAACCT
Found at i:44917562 original size:39 final size:39
Alignment explanation
Indices: 44917358--44917580 Score: 189
Period size: 40 Copynumber: 5.6 Consensus size: 39
44917348 TTGAATGCTG
* * * * * *
44917358 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
44917398 TCCGGACTAAGAT-CCGAAGGCTTTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGC-ATTGTGCGAGTTACTAAA
* * * *
44917437 TTTCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
**
44917478 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* *
44917518 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
44917557 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
44917581 TGAACGAGGA
Statistics
Matches: 154, Mismatches: 22, Indels: 15
0.81 0.12 0.08
Matches are distributed among these distances:
39 39 0.25
40 103 0.67
41 12 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:44917600 original size:79 final size:80
Alignment explanation
Indices: 44917440--44917615 Score: 194
Period size: 79 Copynumber: 2.2 Consensus size: 80
44917430 ATACAAATTT
* * * * *
44917440 CGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGT
1 CGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGA
* ** *
44917505 GCGAGTTGTTAAATC
66 ACGAGGAGCTAAATC
* * * * *
44917520 CGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGA
1 CGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGA
*
44917584 ACGAGGAGCTATATC
66 ACGAGGAGCTAAATC
*
44917599 C-GGTTAAATCCCGAAGG
1 CGGGTTAAGTCCCGAAGG
44917616 TACGTGATTT
Statistics
Matches: 79, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.18
79 49 0.62
80 16 0.20
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (80 bp):
CGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGA
ACGAGGAGCTAAATC
Found at i:44919753 original size:20 final size:21
Alignment explanation
Indices: 44919728--44919775 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
44919718 CTTAAATCCA
44919728 TTTTTTAAAATAATTAT-AAT
1 TTTTTTAAAATAATTATAAAT
*
44919748 TTTTTTAAAATAATTTTAAAT
1 TTTTTTAAAATAATTATAAAT
44919769 TTTTTTA
1 TTTTTTA
44919776 TATTTTCATC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
TTTTTTAAAATAATTATAAAT
Found at i:44921438 original size:18 final size:18
Alignment explanation
Indices: 44921417--44921451 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
44921407 AGGTATGTTT
* *
44921417 CCTAGCCCTTATATGTAC
1 CCTAACCCTTACATGTAC
44921435 CCTAACCCTTACATGTA
1 CCTAACCCTTACATGTA
44921452 TCCTTTTCCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.34, G:0.09, T:0.31
Consensus pattern (18 bp):
CCTAACCCTTACATGTAC
Found at i:44921743 original size:24 final size:24
Alignment explanation
Indices: 44921711--44921778 Score: 70
Period size: 24 Copynumber: 3.0 Consensus size: 24
44921701 TGCGGAACCA
*
44921711 GAAGAACCACAACCACCACCGGAG
1 GAAGGACCACAACCACCACCGGAG
* **
44921735 GAAGGACCACAATCACCACAAGAG
1 GAAGGACCACAACCACCACCGGAG
*
44921759 GAA-GA--ACAACCGCCACCGGA
1 GAAGGACCACAACCACCACCGGA
44921779 AGCTACAGGA
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
21 11 0.31
23 2 0.06
24 23 0.64
ACGTcount: A:0.43, C:0.34, G:0.22, T:0.01
Consensus pattern (24 bp):
GAAGGACCACAACCACCACCGGAG
Found at i:44922043 original size:28 final size:28
Alignment explanation
Indices: 44922002--44922828 Score: 946
Period size: 28 Copynumber: 28.4 Consensus size: 28
44921992 TAACTTGACA
*
44922002 CTAACCTAAATTAATTAAAAAACCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
* *
44922030 ATAACCTAAATTAACTAAAAACCCTAACCT
1 CTAACCTAAATTAATTAAAAACCCTAA--T
*
44922060 AACCCTAACCTAAATTAACTAAAAACCCTAAT
1 ----CTAACCTAAATTAATTAAAAACCCTAAT
44922092 CTAACCTAAATTAATTAAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
*
44922120 CTAACCTAAATTAACTAAAAACCCTAACCT
1 CTAACCTAAATTAATTAAAAACCCTAA--T
* *
44922150 AACCCTAACCTAAATTAACTAAAAACTCTAATCTAACC
1 ----CTAACCTAAATTAATTAAAAAC-C----CTAA-T
* *
44922188 CTAACCTAAATTAACTAAAAATCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
44922216 CTAACCTAAATTAATTAAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
*
44922244 CTAACCTAAATTAATTTAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
* *
44922272 CTAACCTAAATTAATTTAAAACCCTAACC
1 CTAACCTAAATTAATTAAAAACCCTAA-T
*
44922301 CTAACCTAAATTAATTAAAAAACCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
* *
44922329 CTGACCTAAATTAACTAAAAACCCTAACCT
1 CTAACCTAAATTAATTAAAAACCCTAA--T
* *
44922359 AACCCTAACCTTAATTAACTAAAAACCCTAAT
1 ----CTAACCTAAATTAATTAAAAACCCTAAT
*
44922391 CTAACCTAAATTAATTAAAAACCCTAAC
1 CTAACCTAAATTAATTAAAAACCCTAAT
*
44922419 CTAACCTAAATTAACTAAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
* *
44922447 CTAACCTAAATTAATTTAAAACCCTAACC
1 CTAACCTAAATTAATTAAAAACCCTAA-T
**
44922476 CTAACCTAAATTAATTAAAAAATCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
*
44922504 CTAACCTAAATTAACTAAAAA-CC----
1 CTAACCTAAATTAATTAAAAACCCTAAT
*
44922527 CTAACCTAAATTAACTAAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
* *
44922555 CTAACTTAAATTAATTAAAAAACCCTAAC
1 CTAACCTAAATTAATT-AAAAACCCTAAT
*
44922584 CTAACCTAAATTAACTAAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
*
44922612 CTAACCTAAATTAATTTAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
* *
44922640 CTAACCTAAATTAATTTAAAACCCTAACC
1 CTAACCTAAATTAATTAAAAACCCTAA-T
* *
44922669 CTAACCTAAATTAATTAAAAAAACATAAT
1 CTAACCTAAATTAATT-AAAAACCCTAAT
*
44922698 CTAACCTAAATTAACTAAAAACCCTAACCT
1 CTAACCTAAATTAATTAAAAACCCTAA--T
*
44922728 AACCCTAACATAAATTAATTAAAAACCCTAAT
1 ----CTAACCTAAATTAATTAAAAACCCTAAT
*
44922760 CTAACCTAAATTAATTAAAAACCCTAAAC
1 CTAACCTAAATTAATTAAAAACCCT-AAT
*
44922789 CTAACCTAAATTAATTAAAAACCCAAAAT
1 CTAACCTAAATTAATTAAAAACCC-TAAT
44922818 -TAACCTAAATT
1 CTAACCTAAATT
44922829 TTTTGGCTTG
Statistics
Matches: 701, Mismatches: 57, Indels: 82
0.83 0.07 0.10
Matches are distributed among these distances:
23 21 0.03
24 2 0.00
27 1 0.00
28 399 0.57
29 137 0.20
30 12 0.02
32 3 0.00
33 1 0.00
34 119 0.17
35 1 0.00
38 1 0.00
39 4 0.01
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (28 bp):
CTAACCTAAATTAATTAAAAACCCTAAT
Found at i:44922056 original size:62 final size:59
Alignment explanation
Indices: 44921972--44922812 Score: 893
Period size: 62 Copynumber: 14.3 Consensus size: 59
44921962 AAATAAAAAC
* * * *
44921972 CCTAATTTAATTGAAAACCCTAACTTGACACTAACCTAAATTAATTAAAAAACCTAATATAA
1 CCTAAATTAATTAAAAACCCTAAC-T-AC-CTAACCTAAATTAATTAAAAACCCTAATCTAA
* *
44922034 CCTAAATTAACTAAAAACCCTAACCTAACCCTAACCTAAATTAACTAAAAACCCTAATCTAA
1 CCTAAATTAATTAAAAACCCTAA-CT-A-CCTAACCTAAATTAATTAAAAACCCTAATCTAA
*
44922096 CCTAAATTAATTAAAAACCCTAA-T--CTAACCTAAATTAACTAAAAACCCTAACCTAACCCTAA
1 CCTAAATTAATTAAAAACCCTAACTACCTAACCTAAATTAATTAAAAACCCTAA--T----CTAA
* * * *
44922158 CCTAAATTAACTAAAAACTCTAATCTAACCCTAACCTAAATTAACTAAAAATCCTAATCTAA
1 CCTAAATTAATTAAAAACCCTAA-CT-A-CCTAACCTAAATTAATTAAAAACCCTAATCTAA
*
44922220 CCTAAATTAATTAAAAACCCTAA-T--CTAACCTAAATTAATTTAAAACCCTAATCTAA
1 CCTAAATTAATTAAAAACCCTAACTACCTAACCTAAATTAATTAAAAACCCTAATCTAA
* * *
44922276 CCTAAATTAATTTAAAACCCTAAC--CCTAACCTAAATTAATTAAAAAACCTAATCTGA
1 CCTAAATTAATTAAAAACCCTAACTACCTAACCTAAATTAATTAAAAACCCTAATCTAA
* * *
44922333 CCTAAATTAACTAAAAACCCTAACCTAACCCTAACCTTAATTAACTAAAAACCCTAATCTAA
1 CCTAAATTAATTAAAAACCCTAA-CT-A-CCTAACCTAAATTAATTAAAAACCCTAATCTAA
*
44922395 CCTAAATTAATTAAAAACCCT-A--ACCTAACCTAAATTAACTAAAAACCCTAATCTAA
1 CCTAAATTAATTAAAAACCCTAACTACCTAACCTAAATTAATTAAAAACCCTAATCTAA
* **
44922451 CCTAAATTAATTTAAAACCCTAAC--CCTAACCTAAATTAATTAAAAAATCTAATCTAA
1 CCTAAATTAATTAAAAACCCTAACTACCTAACCTAAATTAATTAAAAACCCTAATCTAA
* *
44922508 CCTAAATTAACT--AAA----AAC--CCTAACCTAAATTAACTAAAAACCCTAATCTAA
1 CCTAAATTAATTAAAAACCCTAACTACCTAACCTAAATTAATTAAAAACCCTAATCTAA
* *
44922559 CTTAAATTAATTAAAAAACCCT-A--ACCTAACCTAAATTAACTAAAAACCCTAATCTAA
1 CCTAAATTAATT-AAAAACCCTAACTACCTAACCTAAATTAATTAAAAACCCTAATCTAA
* * *
44922616 CCTAAATTAATTTAAAACCCTAA-T--CTAACCTAAATTAATTTAAAACCCTAACCCTAA
1 CCTAAATTAATTAAAAACCCTAACTACCTAACCTAAATTAATTAAAAACCCTAA-TCTAA
* * *
44922673 CCTAAATTAATTAAAAAAACATAA-T--CTAACCTAAATTAACTAAAAACCCTAACCTAACCCTA
1 CCTAAATTAATT-AAAAACCCTAACTACCTAACCTAAATTAATTAAAAACCCTAA--T----CTA
44922735 A
59 A
* *
44922736 CATAAATTAATTAAAAACCCTAA-T--CTAACCTAAATTAATTAAAAACCCTAAACCTAA
1 CCTAAATTAATTAAAAACCCTAACTACCTAACCTAAATTAATTAAAAACCCT-AATCTAA
44922793 CCTAAATTAATTAAAAACCC
1 CCTAAATTAATTAAAAACCC
44922813 AAAATTAACC
Statistics
Matches: 683, Mismatches: 55, Indels: 87
0.83 0.07 0.11
Matches are distributed among these distances:
51 43 0.06
54 3 0.00
55 3 0.00
56 163 0.24
57 178 0.26
58 36 0.05
59 1 0.00
60 2 0.00
61 1 0.00
62 206 0.30
63 19 0.03
64 1 0.00
66 1 0.00
68 26 0.04
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.26
Consensus pattern (59 bp):
CCTAAATTAATTAAAAACCCTAACTACCTAACCTAAATTAATTAAAAACCCTAATCTAA
Found at i:44922385 original size:17 final size:19
Alignment explanation
Indices: 44922343--44922400 Score: 54
Period size: 17 Copynumber: 3.3 Consensus size: 19
44922333 CCTAAATTAA
*
44922343 CTAAAAACCCTAACCTAACC
1 CTAAAAACCCTAATCTAA-C
*
44922363 CT---AACCTTAAT-TAA-
1 CTAAAAACCCTAATCTAAC
44922377 CTAAAAACCCTAATCTAAC
1 CTAAAAACCCTAATCTAAC
44922396 CTAAA
1 CTAAA
44922401 TTAATTAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 11
0.68 0.07 0.25
Matches are distributed among these distances:
14 2 0.07
16 3 0.10
17 15 0.50
18 3 0.10
19 5 0.17
20 2 0.07
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.22
Consensus pattern (19 bp):
CTAAAAACCCTAATCTAAC
Found at i:44922754 original size:23 final size:26
Alignment explanation
Indices: 44922738--44922812 Score: 96
Period size: 29 Copynumber: 2.7 Consensus size: 26
44922728 AACCCTAACA
44922738 TAAATTAATTAAAAACCCTAATCTAACC
1 TAAATTAATTAAAAACCCTAATC-AA-C
*
44922766 TAAATTAATTAAAAACCCTAAACCTAACC
1 TAAATTAATTAAAAACCCT-AATC-AA-C
44922795 TAAATTAATTAAAAACCC
1 TAAATTAATTAAAAACCC
44922813 AAAATTAACC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
28 19 0.42
29 26 0.58
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.27
Consensus pattern (26 bp):
TAAATTAATTAAAAACCCTAATCAAC
Found at i:44922822 original size:57 final size:56
Alignment explanation
Indices: 44922001--44922828 Score: 865
Period size: 57 Copynumber: 14.2 Consensus size: 56
44921991 CTAACTTGAC
* * * *
44922001 ACTAACCTAAATTAATTAAAAAACCTAATATAACCTAAATTAACTAAAAACCCTAACCTA
1 ACTAACCTAAATTAACTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCC-AA---A
*
44922061 ACCCTAACCTAAATTAACTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCTAA
1 A--CTAACCTAAATTAACTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCAAA
* * *
44922119 TCTAACCTAAATTAACTAAAAACCCTAACCTAACCCTAACCTAAATTAACTAAAAACTCTAATCT
1 ACTAACCTAAATTAACTAAAAACCCTAA--T----CTAACCTAAATTAATTAAAAAC-CCAA---
44922184 A
56 A
* *
44922185 ACCCTAACCTAAATTAACTAAAAATCCTAATCTAACCTAAATTAATTAAAAACCCTAA
1 A--CTAACCTAAATTAACTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCAAA
* * * * *
44922243 TCTAACCTAAATTAATTTAAAACCCTAATCTAACCTAAATTAATTTAAAACCCTAAC
1 ACTAACCTAAATTAACTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCC-AAA
* * * * *
44922300 CCTAACCTAAATTAATTAAAAAACCTAATCTGACCTAAATTAACTAAAAACCCTAACCTA
1 ACTAACCTAAATTAACTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCC-AA---A
* *
44922360 ACCCTAACCTTAATTAACTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCTAA
1 A--CTAACCTAAATTAACTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCAAA
* * *
44922418 CCTAACCTAAATTAACTAAAAACCCTAATCTAACCTAAATTAATTTAAAACCCTAAC
1 ACTAACCTAAATTAACTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCC-AAA
* * ** *
44922475 CCTAACCTAAATTAATTAAAAAATCTAATCTAACCTAAATTAACTAAAAA-CC---
1 ACTAACCTAAATTAACTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCAAA
* *
44922527 -CTAACCTAAATTAACTAAAAACCCTAATCTAACTTAAATTAATTAAAAAACCCTAA
1 ACTAACCTAAATTAACTAAAAACCCTAATCTAACCTAAATTAATT-AAAAACCCAAA
* * *
44922583 CCTAACCTAAATTAACTAAAAACCCTAATCTAACCTAAATTAATTTAAAACCCTAA
1 ACTAACCTAAATTAACTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCAAA
* * * * **
44922639 TCTAACCTAAATTAATTTAAAACCCTAACCCTAACCTAAATTAATTAAAAAAACATAA
1 ACTAACCTAAATTAACTAAAAACCCTAA-TCTAACCTAAATTAATTAAAAACCCA-AA
* * *
44922697 TCTAACCTAAATTAACTAAAAACCCTAACCTAACCCTAACATAAATTAATTAAAAACCCTAA
1 ACTAACCTAAATTAACTAAAAACCCTAA--T----CTAACCTAAATTAATTAAAAACCCAAA
* * *
44922759 TCTAACCTAAATTAATTAAAAACCCTAAACCTAACCTAAATTAATTAAAAACCCAAA
1 ACTAACCTAAATTAACTAAAAACCCT-AATCTAACCTAAATTAATTAAAAACCCAAA
*
44922816 ATTAACCTAAATT
1 ACTAACCTAAATT
44922829 TTTTGGCTTG
Statistics
Matches: 660, Mismatches: 73, Indels: 73
0.82 0.09 0.09
Matches are distributed among these distances:
51 39 0.06
52 5 0.01
53 2 0.00
56 162 0.25
57 197 0.30
58 32 0.05
59 1 0.00
60 1 0.00
61 4 0.01
62 164 0.25
63 25 0.04
66 2 0.00
68 26 0.04
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (56 bp):
ACTAACCTAAATTAACTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCAAA
Found at i:44922844 original size:26 final size:25
Alignment explanation
Indices: 44922815--44922870 Score: 58
Period size: 26 Copynumber: 2.2 Consensus size: 25
44922805 AAAAACCCAA
* *
44922815 AATTAACCTAAATTTTTTGGCTTGAT
1 AATTAACAT-AATTTTTTGGCTTAAT
* *
44922841 AATTTTACATATTTTTTTGGCTTAAT
1 AA-TTAACATAATTTTTTGGCTTAAT
44922867 AATT
1 AATT
44922871 TTACATATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
25 2 0.08
26 18 0.72
27 5 0.20
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.52
Consensus pattern (25 bp):
AATTAACATAATTTTTTGGCTTAAT
Found at i:44922871 original size:26 final size:26
Alignment explanation
Indices: 44922827--44922881 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
44922817 TTAACCTAAA
*
44922827 TTTTTTGGCTTGATAATTTTACATAT
1 TTTTTTGGCTTAATAATTTTACATAT
44922853 TTTTTTGGCTTAATAATTTTACATAT
1 TTTTTTGGCTTAATAATTTTACATAT
44922879 TTT
1 TTT
44922882 GAACACTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.07, G:0.09, T:0.60
Consensus pattern (26 bp):
TTTTTTGGCTTAATAATTTTACATAT
Found at i:44922912 original size:56 final size:57
Alignment explanation
Indices: 44922851--44922994 Score: 152
Period size: 55 Copynumber: 2.5 Consensus size: 57
44922841 AATTTTACAT
* *
44922851 ATTTTTTTGGCTTAATAATTTTACATATTTTGA-ACACTTTAATAACCATTAACACA
1 ATTTTTTTGGCTTAATAATTTTACATATTTTGATAAACTTTAATAACCATTAACAAA
* * * ** *
44922907 A--TTTTTGGACTTAATAATTTGAGAT-TATTTGATAAATTTTTCTAACCATTAAGAAA
1 ATTTTTTTGG-CTTAATAATTTTACATAT-TTTGATAAACTTTAATAACCATTAACAAA
*
44922963 ATTGTTTTGGCTTAATAATTTTACATAATTTT
1 ATTTTTTTGGCTTAATAATTTTACAT-ATTTT
44922995 ACATAATGTT
Statistics
Matches: 70, Mismatches: 11, Indels: 12
0.75 0.12 0.13
Matches are distributed among these distances:
54 8 0.11
55 19 0.27
56 19 0.27
57 14 0.20
58 9 0.13
59 1 0.01
ACGTcount: A:0.35, C:0.10, G:0.08, T:0.47
Consensus pattern (57 bp):
ATTTTTTTGGCTTAATAATTTTACATATTTTGATAAACTTTAATAACCATTAACAAA
Found at i:44922992 original size:10 final size:10
Alignment explanation
Indices: 44922977--44923001 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
44922967 TTTTGGCTTA
44922977 ATAATTTTAC
1 ATAATTTTAC
44922987 ATAATTTTAC
1 ATAATTTTAC
44922997 ATAAT
1 ATAAT
44923002 GTTAGATCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (10 bp):
ATAATTTTAC
Found at i:44927847 original size:20 final size:22
Alignment explanation
Indices: 44927811--44927861 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
44927801 TGGCCAGTAC
*
44927811 AAATTACAAAAACAATAGC-AA
1 AAATAACAAAAACAATAGCAAA
44927832 AAATAACAAAAA-AATAGCAGAA
1 AAATAACAAAAACAATAGCA-AA
44927854 AAATAACA
1 AAATAACA
44927862 GCACCAAGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 6 0.22
21 11 0.41
22 10 0.37
ACGTcount: A:0.71, C:0.12, G:0.06, T:0.12
Consensus pattern (22 bp):
AAATAACAAAAACAATAGCAAA
Found at i:44928415 original size:26 final size:25
Alignment explanation
Indices: 44928368--44928416 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
44928358 TTTGACTCTA
*
44928368 ATTTTTTTAAAATTTCTCTCAATTT
1 ATTTTTTTAAAATTTATCTCAATTT
* *
44928393 ATTTTTTTTAACTTTATCGTCAAT
1 ATTTTTTTAAAATTTATC-TCAAT
44928417 ATGCTTTAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 15 0.75
26 5 0.25
ACGTcount: A:0.27, C:0.12, G:0.02, T:0.59
Consensus pattern (25 bp):
ATTTTTTTAAAATTTATCTCAATTT
Found at i:44928519 original size:22 final size:23
Alignment explanation
Indices: 44928491--44928540 Score: 84
Period size: 22 Copynumber: 2.2 Consensus size: 23
44928481 CTCAACACCA
44928491 AAATTGAGAGAAAATTT-AGAGG
1 AAATTGAGAGAAAATTTAAGAGG
*
44928513 AAATTGAGAGGAAATTTAAGAGG
1 AAATTGAGAGAAAATTTAAGAGG
44928536 AAATT
1 AAATT
44928541 TGAAAGAGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 16 0.62
23 10 0.38
ACGTcount: A:0.50, C:0.00, G:0.26, T:0.24
Consensus pattern (23 bp):
AAATTGAGAGAAAATTTAAGAGG
Found at i:44928534 original size:12 final size:11
Alignment explanation
Indices: 44928491--44928541 Score: 66
Period size: 11 Copynumber: 4.5 Consensus size: 11
44928481 CTCAACACCA
* *
44928491 AAATTGAGAGA
1 AAATTTAGAGG
44928502 AAATTTAGAGG
1 AAATTTAGAGG
*
44928513 AAATTGAGAGG
1 AAATTTAGAGG
44928524 AAATTTAAGAGG
1 AAATTT-AGAGG
44928536 AAATTT
1 AAATTT
44928542 GAAAGAGGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
11 24 0.69
12 11 0.31
ACGTcount: A:0.49, C:0.00, G:0.25, T:0.25
Consensus pattern (11 bp):
AAATTTAGAGG
Found at i:44939623 original size:23 final size:23
Alignment explanation
Indices: 44939549--44939610 Score: 97
Period size: 23 Copynumber: 2.7 Consensus size: 23
44939539 AGGGCGTTAT
*
44939549 AGAATACGCCACAAAGGCTTCAC
1 AGAATATGCCACAAAGGCTTCAC
*
44939572 AGAGTATGCCACAAAGGCTTCAC
1 AGAATATGCCACAAAGGCTTCAC
*
44939595 AGAATATGCCATAAAG
1 AGAATATGCCACAAAG
44939611 ACATCATAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.40, C:0.24, G:0.19, T:0.16
Consensus pattern (23 bp):
AGAATATGCCACAAAGGCTTCAC
Found at i:44943711 original size:18 final size:18
Alignment explanation
Indices: 44943685--44943732 Score: 51
Period size: 21 Copynumber: 2.5 Consensus size: 18
44943675 TTCTTTTTCA
*
44943685 TCTTTAGCAACTTCTTCT
1 TCTTCAGCAACTTCTTCT
44943703 TCTTCAGCAATAACTTCTTCT
1 TCTTCAGC---AACTTCTTCT
*
44943724 TCTGCAGCA
1 TCTTCAGCA
44943733 GCAACTTCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
18 8 0.32
21 17 0.68
ACGTcount: A:0.21, C:0.29, G:0.08, T:0.42
Consensus pattern (18 bp):
TCTTCAGCAACTTCTTCT
Found at i:44943738 original size:21 final size:21
Alignment explanation
Indices: 44943690--44943740 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
44943680 TTTCATCTTT
*
44943690 AGCAACTTCTTCTTCTTCAGC
1 AGCAACTTCTTCTTCTGCAGC
**
44943711 AATAACTTCTTCTTCTGCAGC
1 AGCAACTTCTTCTTCTGCAGC
44943732 AGCAACTTC
1 AGCAACTTC
44943741 CTTTTCAACA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.24, C:0.31, G:0.10, T:0.35
Consensus pattern (21 bp):
AGCAACTTCTTCTTCTGCAGC
Found at i:44947584 original size:49 final size:50
Alignment explanation
Indices: 44947519--44947738 Score: 156
Period size: 50 Copynumber: 4.4 Consensus size: 50
44947509 CAAAGCTATG
* * *
44947519 TCCCAGACATAGTCTTACATGAGATGTT-TCTTGTA-CTGCCAATGCCATA
1 TCCCAGACATGGTCTTACATGAGA-GTTCTCATATAGCTGCCAATGCCATA
* * * * *
44947568 TCCCAGATATGTTCTTACATGAGAGTTCTCATATAGGTGCCCATGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGCTGCCAATGCCATA
* * *** * * * * *
44947618 TCCCAGACATGGTCTTACAGGGGACCACTCATCTTGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGCTGCCAATGCCATA
* * * ** * * * * *
44947668 TCCTAGACATGGTCTTACTTGCGACCTCTCATTTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGCTGCCAATGCCATA
*
44947718 TCCCAAACATGGTCTTACATG
1 TCCCAGACATGGTCTTACATG
44947739 GGACCTCTTA
Statistics
Matches: 140, Mismatches: 29, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
48 3 0.02
49 26 0.19
50 111 0.79
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGCTGCCAATGCCATA
Found at i:44947623 original size:50 final size:48
Alignment explanation
Indices: 44947506--44947636 Score: 138
Period size: 49 Copynumber: 2.6 Consensus size: 48
44947496 GAATATAACA
* * * *
44947506 TGCCAAAGCTATGTCCCAGACATAGTCTTACATGAGATGTTTCTTGTAC
1 TGCCAATGCCATGTCCCAGACAT-GTCTTACATGAGATGTTTCATATAC
* * *
44947555 TGCCAATGCCATATCCCAGATATGTTCTTACATGAGA-GTTCTCATATAGG
1 TGCCAATGCCATGTCCCAGACATG-TCTTACATGAGATGTT-TCATATA-C
*
44947605 TGCCCATGCCATGTCCCAGACATGGTCTTACA
1 TGCCAATGCCATGTCCCAGACAT-GTCTTACA
44947637 GGGGACCACT
Statistics
Matches: 68, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
48 4 0.06
49 36 0.53
50 27 0.40
51 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGTCTTACATGAGATGTTTCATATAC
Found at i:44947649 original size:50 final size:50
Alignment explanation
Indices: 44947555--44947798 Score: 202
Period size: 50 Copynumber: 4.8 Consensus size: 50
44947545 TTTCTTGTAC
* * * * * ***
44947555 TGCCAATGCCATATCCCAGATATGTTCTTACATGAGAGTTCTCATATAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCACTCATATAGG
* * * * *
44947605 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCACTCATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCACTCATATAGG
* * * * * *
44947655 TGCCAACGCCATGTCCTAGACATGGTCTTACTTGCGACCTCTCATTTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCACTCATATAGG
* * * *
44947705 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTTATAATCTTA-A
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCACTCAT-A---TAGG
*
44947758 TGACGGCAATGCCATGTCCCAGACATGGTCTTACATGGGAC
1 TG-C--CAACGCCATGTCCCAGACATGGTCTTACATGGGAC
44947799 TTTTTTACCC
Statistics
Matches: 157, Mismatches: 30, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
50 120 0.76
53 2 0.01
54 2 0.01
56 33 0.21
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCACTCATATAGG
Found at i:44947684 original size:100 final size:100
Alignment explanation
Indices: 44947555--44947743 Score: 243
Period size: 100 Copynumber: 1.9 Consensus size: 100
44947545 TTTCTTGTAC
* * * ** * *
44947555 TGCCAATGCCATATCCCAGATATGTTCTTACATGAGAGTTCTCATATAGGTGCCCATGCCATGTC
1 TGCCAACGCCATATCCCAGACATGGTCTTACATGAGACCTCTCATATAGGTGCCAACGCCATGTC
*
44947620 CCAGACATGGTCTTACAGGGGACCACTCATCTTGG
66 CCAAACATGGTCTTACAGGGGACCACTCATCTTGG
* * * * * *
44947655 TGCCAACGCCATGTCCTAGACATGGTCTTACTTGCGACCTCTCATTTCGGTGCCAACGCCATGTC
1 TGCCAACGCCATATCCCAGACATGGTCTTACATGAGACCTCTCATATAGGTGCCAACGCCATGTC
*
44947720 CCAAACATGGTCTTACATGGGACC
66 CCAAACATGGTCTTACAGGGGACC
44947744 TCTTATAATC
Statistics
Matches: 74, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
100 74 1.00
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.27
Consensus pattern (100 bp):
TGCCAACGCCATATCCCAGACATGGTCTTACATGAGACCTCTCATATAGGTGCCAACGCCATGTC
CCAAACATGGTCTTACAGGGGACCACTCATCTTGG
Found at i:44952565 original size:46 final size:46
Alignment explanation
Indices: 44952512--44952603 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
44952502 AGTAGCCCAA
44952512 AATTCTTCAGCCCTTTGTTTTCTGATCTTATCAACCGGTGGCCTTT
1 AATTCTTCAGCCCTTTGTTTTCTGATCTTATCAACCGGTGGCCTTT
44952558 AATTCTTCAGCCCTTTGTTTTCTGATCTTATCAACCGGTGGCCTTT
1 AATTCTTCAGCCCTTTGTTTTCTGATCTTATCAACCGGTGGCCTTT
44952604 CTCTTATAAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.15, C:0.26, G:0.15, T:0.43
Consensus pattern (46 bp):
AATTCTTCAGCCCTTTGTTTTCTGATCTTATCAACCGGTGGCCTTT
Found at i:44954296 original size:31 final size:31
Alignment explanation
Indices: 44954258--44954319 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
44954248 AGGCAAATTA
44954258 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
44954289 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
44954320 AAAATTATCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (31 bp):
CAAGAGTAATTGAATCCTAATAAAACTCTTT
Found at i:44960465 original size:31 final size:31
Alignment explanation
Indices: 44960427--44960488 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
44960417 AGGCAAATTA
*
44960427 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATCGAATCCTAATAAAACTCTTT
44960458 CAAGAGTAATCGAATCCTAATAAAACTCTTT
1 CAAGAGTAATCGAATCCTAATAAAACTCTTT
44960489 AAAATTATCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.31
Consensus pattern (31 bp):
CAAGAGTAATCGAATCCTAATAAAACTCTTT
Found at i:44968326 original size:17 final size:17
Alignment explanation
Indices: 44968304--44968346 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
44968294 TTGATCGGTT
*
44968304 CATAAAAGTAAA-AGAAA
1 CATAAAA-TAAAGAAAAA
44968321 CATAAACATAAAGAAAAA
1 CATAAA-ATAAAGAAAAA
44968339 CATAAAAT
1 CATAAAAT
44968347 TAAGTCCTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.70, C:0.09, G:0.07, T:0.14
Consensus pattern (17 bp):
CATAAAATAAAGAAAAA
Found at i:44989696 original size:20 final size:19
Alignment explanation
Indices: 44989673--44989721 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
44989663 TCGCGCTACA
* *
44989673 GTGCCCCTGTTTGCACATTT
1 GTGCCCCTGTCTACAC-TTT
44989693 GTGCCCCTGTCTACACTTT
1 GTGCCCCTGTCTACACTTT
44989712 GATGCCCCTG
1 G-TGCCCCTG
44989722 CTATGCATCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 4 0.15
20 22 0.85
ACGTcount: A:0.10, C:0.35, G:0.20, T:0.35
Consensus pattern (19 bp):
GTGCCCCTGTCTACACTTT
Found at i:44993474 original size:27 final size:27
Alignment explanation
Indices: 44993423--44993504 Score: 96
Period size: 27 Copynumber: 3.1 Consensus size: 27
44993413 ACAATCATAC
*
44993423 ATAACATA-GAGCAT-ATAGTCATTTT
1 ATAACATAGGGGCATAATAGTCATTTT
*
44993448 ATAACATAGGGGCATAACAGTCATTTT
1 ATAACATAGGGGCATAATAGTCATTTT
** * *
44993475 ACCACGTGGGGGCATAATAGTCATTTT
1 ATAACATAGGGGCATAATAGTCATTTT
44993502 ATA
1 ATA
44993505 TCAGTTTGGG
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
25 8 0.17
26 5 0.11
27 33 0.72
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (27 bp):
ATAACATAGGGGCATAATAGTCATTTT
Found at i:45001074 original size:27 final size:27
Alignment explanation
Indices: 45001037--45001108 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
45001027 AAAATATAAA
45001037 GCAT-ATAGTCATTTTATAACATAGGG
1 GCATAATAGTCATTTTATAACATAGGG
** * *
45001063 GCATAATAGTCATTTTACCACTTGGGG
1 GCATAATAGTCATTTTATAACATAGGG
*
45001090 GCATAACAGTCATTTTATA
1 GCATAATAGTCATTTTATA
45001109 TCAGTTTGGG
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
26 4 0.11
27 34 0.89
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (27 bp):
GCATAATAGTCATTTTATAACATAGGG
Found at i:45002935 original size:25 final size:28
Alignment explanation
Indices: 45002891--45002951 Score: 78
Period size: 25 Copynumber: 2.4 Consensus size: 28
45002881 AAAAATGCAT
45002891 TTAGTGAATTTTTTAGGAAAAT-AAAAG
1 TTAGTGAATTTTTTAGGAAAATGAAAAG
*
45002918 TTAGT-AA-TTTTTATGAAAATGAAAA-
1 TTAGTGAATTTTTTAGGAAAATGAAAAG
45002943 TTA-TGAATT
1 TTAGTGAATT
45002952 AAAATCTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
24 1 0.03
25 17 0.57
26 7 0.23
27 5 0.17
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.41
Consensus pattern (28 bp):
TTAGTGAATTTTTTAGGAAAATGAAAAG
Found at i:45003838 original size:24 final size:24
Alignment explanation
Indices: 45003795--45003849 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
45003785 ATACACCATC
*
45003795 ATTAAAAATTCTAAATAAATCCTA
1 ATTAAAAATTCTAAATAAATCATA
*
45003819 ATTAAAAATTGTAAGA-AAATCATA
1 ATTAAAAATTCTAA-ATAAATCATA
*
45003843 TTTAAAA
1 ATTAAAA
45003850 CTTAATTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 26 0.96
25 1 0.04
ACGTcount: A:0.56, C:0.07, G:0.04, T:0.33
Consensus pattern (24 bp):
ATTAAAAATTCTAAATAAATCATA
Found at i:45004624 original size:5 final size:6
Alignment explanation
Indices: 45004606--45004633 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
45004596 TAAACATTAT
45004606 AATAAA AATAAA AATAAA AATAAA AATA
1 AATAAA AATAAA AATAAA AATAAA AATA
45004634 GGATCAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
AATAAA
Found at i:45020357 original size:30 final size:30
Alignment explanation
Indices: 45020323--45020538 Score: 144
Period size: 29 Copynumber: 7.3 Consensus size: 30
45020313 TAACCAAAGT
45020323 TATCCCTTTTCATAGTTCGATAGTCGAAGC
1 TATCCCTTTTCATAGTTCGATAGTCGAAGC
* * *
45020353 TAT-CCTTTTCCATAAATTC-ATGGTCGTCA-C
1 TATCCCTTTT-CAT-AGTTCGATAGTCG-AAGC
* * * * *
45020383 CATCCATTTTCATTGTT-GATGGTCGTCA-C
1 TATCCCTTTTCATAGTTCGATAGTCG-AAGC
* * *
45020412 CATCCCTTTTCATAATTTGATAGTCGAAGC
1 TATCCCTTTTCATAGTTCGATAGTCGAAGC
* *
45020442 TATCCCTTTTCATTGTTCGATAG-CCACAGC
1 TATCCCTTTTCATAGTTCGATAGTCGA-AGC
* * * *
45020472 CATCCCTTTTCATA-ATCGATAGCCAAAGC
1 TATCCCTTTTCATAGTTCGATAGTCGAAGC
* *
45020501 TATCCCTTTTAATA-TTCCATAG-CTGAAGC
1 TATCCCTTTTCATAGTTCGATAGTC-GAAGC
45020530 TATCCCTTT
1 TATCCCTTT
45020539 CCATTTGTCG
Statistics
Matches: 150, Mismatches: 26, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
28 1 0.01
29 77 0.51
30 62 0.41
31 10 0.07
ACGTcount: A:0.24, C:0.26, G:0.12, T:0.38
Consensus pattern (30 bp):
TATCCCTTTTCATAGTTCGATAGTCGAAGC
Found at i:45025708 original size:40 final size:40
Alignment explanation
Indices: 45025656--45025927 Score: 445
Period size: 40 Copynumber: 6.8 Consensus size: 40
45025646 ATAACCACAA
* * * *
45025656 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
45025696 GCACGAATGCCTTTGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
45025736 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
45025776 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA--TCAACTC
45025818 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
45025858 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
45025898 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
45025928 GTATTCAAAT
Statistics
Matches: 217, Mismatches: 13, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
40 177 0.82
42 40 0.18
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:45025848 original size:122 final size:122
Alignment explanation
Indices: 45025656--45025935 Score: 458
Period size: 122 Copynumber: 2.3 Consensus size: 122
45025646 ATAACCACAA
* * * * *
45025656 GCACAATTGCCTTCGGGTCTTAACCCGGGTATA-G-CAACTCGCACGAATGCCTTTGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
* *
45025719 CCCGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
66 CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
45025776 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
*
45025841 CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
66 CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
45025898 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAT-TCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAA
45025936 ATGCTCATGC
Statistics
Matches: 149, Mismatches: 9, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
120 30 0.20
121 5 0.03
122 114 0.77
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (122 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:45034198 original size:40 final size:40
Alignment explanation
Indices: 45034146--45034417 Score: 445
Period size: 40 Copynumber: 6.8 Consensus size: 40
45034136 ATAACCACAA
* * * *
45034146 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
45034186 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
45034226 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
45034266 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA--TCAACTC
*
45034308 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
45034348 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
45034388 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
45034418 GTATTCAAAT
Statistics
Matches: 219, Mismatches: 11, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
40 179 0.82
42 40 0.18
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:45034337 original size:122 final size:122
Alignment explanation
Indices: 45034146--45034425 Score: 476
Period size: 122 Copynumber: 2.3 Consensus size: 122
45034136 ATAACCACAA
* * * *
45034146 GCACAATTGCCTTCGGGTCTTAACCCGGGTATA-G-CAACTCGCACGAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
*
45034209 CCCGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
66 CCCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
45034266 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
*
45034331 CCCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
66 CCCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
45034388 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAT-TCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAA
45034426 ATGCTCATGC
Statistics
Matches: 151, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
120 30 0.20
121 5 0.03
122 116 0.77
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (122 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
CCCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:45038032 original size:30 final size:28
Alignment explanation
Indices: 45037975--45038048 Score: 76
Period size: 30 Copynumber: 2.5 Consensus size: 28
45037965 ATGGTTGACC
*
45037975 CATCCTTTTTCATAACTTGATAACCAAAG
1 CATCCTTTTTCAT-ACTTGACAACCAAAG
* *
45038004 TCATCCTTTTTCATAGTTCGACAGCCAAAG
1 -CATCCTTTTTCATACTT-GACAACCAAAG
*
45038034 CTATCCTTTTCCATA
1 C-ATCCTTTTTCATA
45038049 ATTTGATGGT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
29 4 0.11
30 34 0.89
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.36
Consensus pattern (28 bp):
CATCCTTTTTCATACTTGACAACCAAAG
Found at i:45038086 original size:29 final size:28
Alignment explanation
Indices: 45038051--45038224 Score: 86
Period size: 29 Copynumber: 5.9 Consensus size: 28
45038041 TTTCCATAAT
45038051 TTGATGGTCGTCACCATCCCTTTTCATTG
1 TTGATGGTC-TCACCATCCCTTTTCATTG
* *
45038080 TTGATGGCCATCACCCTCCCTTTTCATAAT-
1 TTGATGGTC-TCACCATCCCTTTTCAT--TG
* * * *
45038110 TTGATTG-CTGAAGCTATCCCTTTTCATGG
1 TTGATGGTCT-CA-CCATCCCTTTTCATTG
* * * * *
45038139 CTCGATAG-CTGAAGCCATCGCTTTTCA-AG
1 -TTGATGGTCT-CA-CCATCCCTTTTCATTG
*
45038168 TTCAATGGTCATCACCATCCCTTTTCATTG
1 TT-GATGGTC-TCACCATCCCTTTTCATTG
* *
45038198 TTGATGGTTGTCACCATCCTTTTTCAT
1 TTGATGG-TCTCACCATCCCTTTTCAT
45038225 AATCTATAGC
Statistics
Matches: 112, Mismatches: 22, Indels: 22
0.72 0.14 0.14
Matches are distributed among these distances:
28 2 0.02
29 62 0.55
30 46 0.41
31 2 0.02
ACGTcount: A:0.18, C:0.27, G:0.16, T:0.39
Consensus pattern (28 bp):
TTGATGGTCTCACCATCCCTTTTCATTG
Found at i:45041082 original size:181 final size:181
Alignment explanation
Indices: 45040788--45041135 Score: 624
Period size: 181 Copynumber: 1.9 Consensus size: 181
45040778 ATAGTGTCCG
*
45040788 TACCTAGTTCTAAAAGTAGTTTTCAACACGTCCAAATCTTTAACCCGTAGTTGATAATATCAACA
1 TACCTAGTTCTAAAAGTAGTTTTCAACACGTCCAAATCTTTAACCCATAGTTGATAATATCAACA
* *
45040853 ATAGAGATGAATCTTTGAAAATACTGTCGCACCTTTCATCTGATCAAACAAATCATCAATACATG
66 ACAGAGATGAATCTTTGAAAATACTGTCGCACCTTTCAACTGATCAAACAAATCATCAATACATG
45040918 GCAAGGGATATTTTTTCTTGATTGTGACTTTGTTGAGTTGTATAGTGTTTT
131 GCAAGGGATATTTTTTCTTGATTGTGACTTTGTTGAGTTGTATAGTGTTTT
** *
45040969 TACCTAGTTCTAAAAGTAGTTTTTGACACGTCCAAATCTTTAACCCATAGTTGATAATATCCACA
1 TACCTAGTTCTAAAAGTAGTTTTCAACACGTCCAAATCTTTAACCCATAGTTGATAATATCAACA
* *
45041034 ACAGAGATGAATCTTTGAAAGTACTGTCGCACCTTTCAACTGATCAAACAAATCATCAATACGTG
66 ACAGAGATGAATCTTTGAAAATACTGTCGCACCTTTCAACTGATCAAACAAATCATCAATACATG
45041099 GCAAGGGATATTTTTTCTTGATTGTGACTTTGTTGAG
131 GCAAGGGATATTTTTTCTTGATTGTGACTTTGTTGAG
45041136 CTGTCTATAG
Statistics
Matches: 159, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
181 159 1.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.35
Consensus pattern (181 bp):
TACCTAGTTCTAAAAGTAGTTTTCAACACGTCCAAATCTTTAACCCATAGTTGATAATATCAACA
ACAGAGATGAATCTTTGAAAATACTGTCGCACCTTTCAACTGATCAAACAAATCATCAATACATG
GCAAGGGATATTTTTTCTTGATTGTGACTTTGTTGAGTTGTATAGTGTTTT
Found at i:45042692 original size:12 final size:10
Alignment explanation
Indices: 45042662--45042713 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
45042652 AATATGAACA
*
45042662 TAATGAATTT
1 TAATTAATTT
45042672 TAATTAATTT
1 TAATTAATTT
45042682 TATAGTTAATTT
1 TA-A-TTAATTT
*
45042694 TGATTAATTT
1 TAATTAATTT
*
45042704 TGATT-ATTT
1 TAATTAATTT
45042713 T
1 T
45042714 CGACAGATTC
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
9 5 0.13
10 23 0.61
11 2 0.05
12 8 0.21
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.60
Consensus pattern (10 bp):
TAATTAATTT
Found at i:45052167 original size:25 final size:25
Alignment explanation
Indices: 45052135--45052228 Score: 84
Period size: 25 Copynumber: 3.7 Consensus size: 25
45052125 ACATGGGAAT
45052135 AATGCTCACACAAGCTGTAACTGT-
1 AATGCTCACACAAGCTGTAACTGTC
** * *
45052159 AATTGCTCACATGAGTTGTAATTGTC
1 AA-TGCTCACACAAGCTGTAACTGTC
* *
45052185 AATGCTCACACAAGCTGTGAAATGGGC
1 AATGCTCACACAAGCTGT-AACT-GTC
*
45052212 -CTGCTCACACAAGCTGT
1 AATGCTCACACAAGCTGT
45052229 GGGTCGAGAT
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
24 2 0.04
25 31 0.55
26 21 0.38
27 2 0.04
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (25 bp):
AATGCTCACACAAGCTGTAACTGTC
Found at i:45056617 original size:22 final size:22
Alignment explanation
Indices: 45056591--45056635 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
45056581 ATTATATGTA
45056591 TTAATTCATAATATAA-TTAATT
1 TTAATTCAT-ATATAATTTAATT
* *
45056613 TTAATTTATATCTAATTTAATT
1 TTAATTCATATATAATTTAATT
45056635 T
1 T
45056636 GGGATAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAATTCATATATAATTTAATT
Found at i:45057046 original size:18 final size:19
Alignment explanation
Indices: 45057018--45057054 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
45057008 GCATTCACAT
45057018 CTTTCCTCTCTTCTCTCTA
1 CTTTCCTCTCTTCTCTCTA
*
45057037 CTTT-CTCTCTTCTTTCTA
1 CTTTCCTCTCTTCTCTCTA
45057055 TTCCAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.05, C:0.38, G:0.00, T:0.57
Consensus pattern (19 bp):
CTTTCCTCTCTTCTCTCTA
Found at i:45063410 original size:14 final size:14
Alignment explanation
Indices: 45063391--45063419 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
45063381 CCGGTCCATT
45063391 TATGATTCATCGAG
1 TATGATTCATCGAG
45063405 TATGATTCATCGAG
1 TATGATTCATCGAG
45063419 T
1 T
45063420 CTATCCATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.38
Consensus pattern (14 bp):
TATGATTCATCGAG
Found at i:45070480 original size:18 final size:19
Alignment explanation
Indices: 45070452--45070488 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
45070442 GCATTCACAT
45070452 CTTTCCTCTCTTCTCTCCA
1 CTTTCCTCTCTTCTCTCCA
*
45070471 CTTT-CTCTCTTCTTTCCA
1 CTTTCCTCTCTTCTCTCCA
45070489 TTCCAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.05, C:0.43, G:0.00, T:0.51
Consensus pattern (19 bp):
CTTTCCTCTCTTCTCTCCA
Found at i:45073722 original size:50 final size:50
Alignment explanation
Indices: 45073626--45073762 Score: 157
Period size: 50 Copynumber: 2.7 Consensus size: 50
45073616 GATAAAGAGA
* * **
45073626 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAC
* * * **
45073676 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACTGTTATGAGAAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAC
* * * *
45073726 TCTCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA
45073763 ATACAAAAAA
Statistics
Matches: 72, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 72 1.00
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (50 bp):
TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAC
Found at i:45079659 original size:80 final size:80
Alignment explanation
Indices: 45079507--45079699 Score: 221
Period size: 80 Copynumber: 2.4 Consensus size: 80
45079497 CGGTTTTAGT
* * *
45079507 AACTCACACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTT
1 AACTCGCACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTT
*
45079572 AACCCGGATTTA-AC
66 AACCCGGATATATAC
** *
45079586 AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATC
1 AACTCGCAC-AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGA-C
** *
45079650 TTAGTCCGGATATATTC
64 TTAACCCGGATATATAC
* * *
45079667 -ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AAC-TCGCACAATGCCTTCGGGACTTAACCCGGA
45079700 CAGCATTCAA
Statistics
Matches: 97, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
79 11 0.11
80 80 0.82
81 6 0.06
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (80 bp):
AACTCGCACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTT
AACCCGGATATATAC
Found at i:45079660 original size:40 final size:40
Alignment explanation
Indices: 45079477--45079646 Score: 234
Period size: 40 Copynumber: 4.3 Consensus size: 40
45079467 TCCTCGTTCA
* * * ** *
45079477 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
45079516 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
45079556 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
45079596 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
45079636 AAGGCCTTCGG
1 AATGCCTTCGG
45079647 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 33 0.28
40 86 0.72
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:45079699 original size:120 final size:119
Alignment explanation
Indices: 45079477--45079699 Score: 272
Period size: 120 Copynumber: 1.9 Consensus size: 119
45079467 TCCTCGTTCA
* * * *
45079477 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGATA
* *
45079542 TAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
66 TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * **
45079596 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CTTAACCCGGA
* *
45079660 TATATTC-ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAAC-TAGCACGAAAGCCTTCGGGACTTAACCCGGA
45079700 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
119 37 0.43
120 44 0.51
121 6 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGATA
TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:45079708 original size:41 final size:41
Alignment explanation
Indices: 45079631--45079708 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
45079621 TTAGTATCTC
* * *
45079631 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
45079672 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
45079709 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:45083431 original size:50 final size:49
Alignment explanation
Indices: 45083350--45083535 Score: 173
Period size: 50 Copynumber: 3.7 Consensus size: 49
45083340 GGTAAAGAGA
*
45083350 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA-GATGAGAGGTC
1 TCCCA-GTAAGACCATGTCTGGGACATGGCATTGGCACC-ATGATGAGA--AC
* * *
45083402 TCCC-GTAAGACCATGTCTAGGACATGGCATGGGCACCATTATGAGAAC
1 TCCCAGTAAGACCATGTCTGGGACATGGCATTGGCACCATGATGAGAAC
* * ** *
45083450 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCAGTAT-A-GAAAAC
1 TCCCA-GTAAGACCATGTCTGGGACATGGCATTGGCACCATGATGAGAAC
* * *
45083498 ATCCCATGTAAGACTATGTCTGGGACATAGCTTTGGCA
1 -TCCCA-GTAAGACCATGTCTGGGACATGGCATTGGCA
45083536 TGTATTATTA
Statistics
Matches: 114, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
48 10 0.09
49 34 0.30
50 66 0.58
52 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (49 bp):
TCCCAGTAAGACCATGTCTGGGACATGGCATTGGCACCATGATGAGAAC
Found at i:45087231 original size:49 final size:49
Alignment explanation
Indices: 45087178--45087290 Score: 194
Period size: 47 Copynumber: 2.3 Consensus size: 49
45087168 TTGTGATGTG
* *
45087178 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
45087227 AGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
45087274 AGTGTATATATATGTGA
1 AGTGTATATATATGTGA
45087291 ATGAATGTGA
Statistics
Matches: 60, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
47 45 0.75
49 15 0.25
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (49 bp):
AGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
Found at i:45087296 original size:28 final size:28
Alignment explanation
Indices: 45087258--45087318 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
45087248 CGAATGGCCA
45087258 ATGTG-ATGAATGTGAAAGTGTATATAT
1 ATGTGAATGAATGTGAAAGTGTATATAT
45087285 ATGTGAATGAATGTGAAAGTGTATATAT
1 ATGTGAATGAATGTGAAAGTGTATATAT
45087313 ATGTGA
1 ATGTGA
45087319 TAAGGCCGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 5 0.15
28 28 0.85
ACGTcount: A:0.38, C:0.00, G:0.26, T:0.36
Consensus pattern (28 bp):
ATGTGAATGAATGTGAAAGTGTATATAT
Found at i:45087341 original size:77 final size:74
Alignment explanation
Indices: 45087211--45087363 Score: 270
Period size: 77 Copynumber: 2.0 Consensus size: 74
45087201 CTAATGGCCG
45087211 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
45087276 TGTATATAT
66 TGTATATAT
*
45087285 ATGTGAATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGA
1 ATGTG-ATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
45087350 AAGTGTATATAT
63 AAGTGTATATAT
45087362 AT
1 AT
45087364 ATGTGATAAG
Statistics
Matches: 75, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
74 5 0.07
75 15 0.20
77 55 0.73
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.31
Consensus pattern (74 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
TGTATATAT
Found at i:45087345 original size:49 final size:49
Alignment explanation
Indices: 45087285--45087705 Score: 612
Period size: 47 Copynumber: 8.8 Consensus size: 49
45087275 GTGTATATAT
*
45087285 ATGTGAATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCG
1 ATGTG-ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
45087335 ATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGCCG
* *
45087386 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG-CGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
45087432 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
45087481 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* * *
45087530 ATGTAATGAATGTGAAAGTG--TATATATGTGATGAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
45087577 ATGTGATGAATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* * * * *
45087624 ATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* *
45087671 ACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
45087706 TCCCGAAGGG
Statistics
Matches: 344, Mismatches: 20, Indels: 17
0.90 0.05 0.04
Matches are distributed among these distances:
46 28 0.08
47 153 0.44
48 17 0.05
49 93 0.27
50 5 0.01
51 48 0.14
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
Found at i:45090170 original size:40 final size:40
Alignment explanation
Indices: 45089931--45090158 Score: 307
Period size: 40 Copynumber: 5.7 Consensus size: 40
45089921 AGGTCTCGAC
*
45089931 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
45089970 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
45090010 GATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
45090050 GATGTATCTGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * * * * * *
45090090 AATATATCCGTGCTAA-ACCTCGAAGAGTATTCGTGTTGGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTAGT
* * *
45090130 GTTATATCCGGGCTAGGTCCCGAAGAGCA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCA
45090159 ATCATGCTGG
Statistics
Matches: 166, Mismatches: 20, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 5 0.03
40 159 0.96
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:45093459 original size:47 final size:47
Alignment explanation
Indices: 45093407--45093946 Score: 776
Period size: 47 Copynumber: 11.6 Consensus size: 47
45093397 GATAATTGTG
* *
45093407 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
45093454 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
45093501 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
45093550 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
45093597 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
45093644 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
45093691 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
45093740 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
45093789 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
45093836 ATGTGAAAGTG----TA--T-AT--CGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
45093874 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
*
45093921 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
45093947 TCCCGAAGGG
Statistics
Matches: 453, Mismatches: 25, Indels: 29
0.89 0.05 0.06
Matches are distributed among these distances:
38 31 0.07
40 2 0.00
41 1 0.00
42 2 0.00
43 2 0.00
44 1 0.00
45 1 0.00
47 274 0.60
48 2 0.00
49 137 0.30
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:45093477 original size:96 final size:94
Alignment explanation
Indices: 45093407--45093946 Score: 690
Period size: 96 Copynumber: 5.8 Consensus size: 94
45093397 GATAATTGTG
45093407 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
45093472 GTGATAAGGCCG-AATGGCCAATGTGATGA
66 GTGATAAGG-CGTAATGGCCAATGTGATGA
45093501 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * *
45093566 ATGTGATGAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCGTAATGGCCAATGTGATGA
* * * *
45093597 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
45093662 GTGATAAGGCCG-AATGGCCAATGTGATGA
66 GTGATAAGG-CGTAATGGCCAATGTGATGA
*
45093691 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
* *
45093756 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
62 ATATGTGATAAGGCGTAATGGCCAATGTGATGA
* * *
45093789 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG----TA-
1 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * *
45093849 -T-AT--CGCCTAATGGCCGATGTGATGA
66 GTGATAAGGCGTAATGGCCAATGTGATGA
* * * * * * * * *
45093874 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 ATGTGAATGTATATATATGTGATAAG-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
45093938 TGTGATAAG
65 TGTGATAAG
45093947 TCCCGAAGGG
Statistics
Matches: 398, Mismatches: 29, Indels: 38
0.86 0.06 0.08
Matches are distributed among these distances:
84 2 0.01
85 69 0.17
87 2 0.01
88 1 0.00
89 1 0.00
90 2 0.01
91 1 0.00
92 2 0.01
94 88 0.22
95 8 0.02
96 182 0.46
97 3 0.01
98 37 0.09
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (94 bp):
ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCGTAATGGCCAATGTGATGA
Found at i:45093696 original size:190 final size:190
Alignment explanation
Indices: 45093407--45093946 Score: 816
Period size: 190 Copynumber: 2.9 Consensus size: 190
45093397 GATAATTGTG
* *
45093407 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
45093472 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
*
45093537 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
131 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
45093597 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
45093662 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATA
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
45093727 GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
131 GCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
45093789 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG----TA-
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * *
45093849 -T-AT--CGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA-CAGAGCCGAGT
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG-GCCTAAT
* * * *
45093907 GGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
130 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
45093947 TCCCGAAGGG
Statistics
Matches: 327, Mismatches: 20, Indels: 17
0.90 0.05 0.05
Matches are distributed among these distances:
179 14 0.04
180 2 0.01
181 37 0.11
183 30 0.09
185 2 0.01
186 1 0.00
188 2 0.01
190 149 0.46
192 90 0.28
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (190 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:45093857 original size:38 final size:38
Alignment explanation
Indices: 45093815--45093889 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
45093805 ATGTGATAAG
45093815 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATC
1 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATC
*
45093853 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
45093890 ATGTGACAGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.29
Consensus pattern (38 bp):
GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATC
Found at i:45093871 original size:85 final size:85
Alignment explanation
Indices: 45093768--45093935 Score: 257
Period size: 85 Copynumber: 2.0 Consensus size: 85
45093758 ATGTGATAAG
* * *
45093768 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG-GCCTAATAGCCGATGTG
1 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA-AAGAGCCGAATAGCCAACGTG
45093832 ATGAATGTGAAAGTGTATATC
65 ATGAATGTGAAAGTGTATATC
* * *
45093853 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGAGCCGAGTGGCCAACGTGA
1 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAAAGAGCCGAATAGCCAACGTGA
*
45093918 TGGATGTGAAAGTGTATA
66 TGAATGTGAAAGTGTATA
45093936 AATGTGATAA
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
84 2 0.03
85 73 0.97
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.27
Consensus pattern (85 bp):
GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAAAGAGCCGAATAGCCAACGTGA
TGAATGTGAAAGTGTATATC
Found at i:45098690 original size:49 final size:49
Alignment explanation
Indices: 45098637--45098749 Score: 194
Period size: 47 Copynumber: 2.3 Consensus size: 49
45098627 TTGTGATGTG
* *
45098637 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
45098686 AGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
45098733 AGTGTATATATATGTGA
1 AGTGTATATATATGTGA
45098750 ATGAATGTGA
Statistics
Matches: 60, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
47 45 0.75
49 15 0.25
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (49 bp):
AGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
Found at i:45098755 original size:28 final size:28
Alignment explanation
Indices: 45098717--45098777 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
45098707 CGAATGGCCA
45098717 ATGTG-ATGAATGTGAAAGTGTATATAT
1 ATGTGAATGAATGTGAAAGTGTATATAT
45098744 ATGTGAATGAATGTGAAAGTGTATATAT
1 ATGTGAATGAATGTGAAAGTGTATATAT
45098772 ATGTGA
1 ATGTGA
45098778 TAAGGCCGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 5 0.15
28 28 0.85
ACGTcount: A:0.38, C:0.00, G:0.26, T:0.36
Consensus pattern (28 bp):
ATGTGAATGAATGTGAAAGTGTATATAT
Found at i:45098800 original size:77 final size:74
Alignment explanation
Indices: 45098670--45098822 Score: 270
Period size: 77 Copynumber: 2.0 Consensus size: 74
45098660 CTAATGGCCG
45098670 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
45098735 TGTATATAT
66 TGTATATAT
*
45098744 ATGTGAATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGA
1 ATGTG-ATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
45098809 AAGTGTATATAT
63 AAGTGTATATAT
45098821 AT
1 AT
45098823 ATGTGATAAG
Statistics
Matches: 75, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
74 5 0.07
75 15 0.20
77 55 0.73
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.31
Consensus pattern (74 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
TGTATATAT
Found at i:45098804 original size:49 final size:49
Alignment explanation
Indices: 45098744--45099263 Score: 828
Period size: 49 Copynumber: 10.8 Consensus size: 49
45098734 GTGTATATAT
*
45098744 ATGTGAATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCG
1 ATGTG-ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
45098794 ATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGCCG
45098845 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
45098894 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG-CTGAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT-AATGGCCG
45098941 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
45098990 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
45099039 ATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
45099088 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
45099135 ATGTGATGAATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* * * * *
45099182 ATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* *
45099229 ACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
45099264 TCCCGAAGGG
Statistics
Matches: 446, Mismatches: 16, Indels: 19
0.93 0.03 0.04
Matches are distributed among these distances:
46 2 0.00
47 182 0.41
48 1 0.00
49 206 0.46
50 7 0.02
51 48 0.11
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
Found at i:45098947 original size:96 final size:96
Alignment explanation
Indices: 45098744--45099263 Score: 834
Period size: 96 Copynumber: 5.4 Consensus size: 96
45098734 GTGTATATAT
*
45098744 ATGTGAATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGA
1 ATGTG-ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
45098809 AAGTGTATATATATATGTGATAAGGCCTAATGGCCG
65 AAGTG----TATATATGTGATAAGGCCTAATGGCCG
45098845 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
45098910 AGTGTATATATGTGATAAGG-CTGAATGGCCG
66 AGTGTATATATGTGATAAGGCCT-AATGGCCG
45098941 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
45099006 AGTGTATATATATGTGATAAGGCCTAATGGCCG
66 AGTG--TATATATGTGATAAGGCCTAATGGCCG
*
45099039 ATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
45099104 AGTGTATATATGTGATAAGGCCTAATAGCCG
66 AGTGTATATATGTGATAAGGCCTAATGGCCG
*
45099135 ATGTGATGAATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * *
45099198 AGTGTATATATGTGACAGGGCCGAGTGGCCA
66 AGTGTATATATGTGATAAGGCCTAATGGCCG
* *
45099229 ACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
45099264 TCCCGAAGGG
Statistics
Matches: 399, Mismatches: 14, Indels: 19
0.92 0.03 0.04
Matches are distributed among these distances:
94 94 0.24
95 3 0.01
96 140 0.35
98 92 0.23
99 2 0.01
100 63 0.16
101 5 0.01
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
AGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:45104947 original size:7 final size:7
Alignment explanation
Indices: 45104935--45104964 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
45104925 GAAACATACA
45104935 AAATTTT
1 AAATTTT
45104942 AAATTTT
1 AAATTTT
45104949 AAATTTT
1 AAATTTT
45104956 AAATTTT
1 AAATTTT
45104963 AA
1 AA
45104965 TATAACAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (7 bp):
AAATTTT
Found at i:45108449 original size:15 final size:14
Alignment explanation
Indices: 45108423--45108466 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
45108413 CATTATAAAA
45108423 ATTTATAAATATAT
1 ATTTATAAATATAT
45108437 ATTTATAAAATATAT
1 ATTTAT-AAATATAT
* * *
45108452 ACTAATAAATTTAT
1 ATTTATAAATATAT
45108466 A
1 A
45108467 AAGCTTTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
14 14 0.54
15 12 0.46
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTATAAATATAT
Found at i:45108497 original size:25 final size:24
Alignment explanation
Indices: 45108469--45108539 Score: 97
Period size: 25 Copynumber: 2.9 Consensus size: 24
45108459 AATTTATAAA
*
45108469 GCTTTTATATATTTACATACTATAG
1 GCTTTTATATATTTAAATACTAT-G
* *
45108494 GCTTTTATATATTTATATATTATG
1 GCTTTTATATATTTAAATACTATG
45108518 GACTTTTATATATTTAAATACT
1 G-CTTTTATATATTTAAATACT
45108540 TTAATGTTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 2 0.05
25 39 0.95
ACGTcount: A:0.32, C:0.08, G:0.07, T:0.52
Consensus pattern (24 bp):
GCTTTTATATATTTAAATACTATG
Found at i:45108549 original size:25 final size:25
Alignment explanation
Indices: 45108469--45108581 Score: 90
Period size: 25 Copynumber: 4.6 Consensus size: 25
45108459 AATTTATAAA
* * *
45108469 GCTTTTATATATTTACATACTATAG
1 GCTTTTATATATTTATATACTTTAT
45108494 GCTTTTATATATTTATATA--TTAT
1 GCTTTTATATATTTATATACTTTAT
*
45108517 GGACTTTTATATATTTAAATACTTTAAT
1 -G-CTTTTATATATTTATATACTTT-AT
* * * *
45108545 GTTTTTATAAATATATA-ATTTTAT
1 GCTTTTATATATTTATATACTTTAT
*
45108569 G-TTTTATTTATTT
1 GCTTTTATATATTT
45108582 TTCAAAATAA
Statistics
Matches: 71, Mismatches: 12, Indels: 12
0.75 0.13 0.13
Matches are distributed among these distances:
23 11 0.15
24 4 0.06
25 39 0.55
26 12 0.17
27 3 0.04
28 2 0.03
ACGTcount: A:0.32, C:0.05, G:0.06, T:0.57
Consensus pattern (25 bp):
GCTTTTATATATTTATATACTTTAT
Found at i:45109177 original size:20 final size:21
Alignment explanation
Indices: 45109139--45109178 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
45109129 TATATATAAC
* *
45109139 TAAAAAAAAGTATCTTAAAAT
1 TAAAAAAAACTAACTTAAAAT
45109160 TAAAAAAAACTAAC-TAAAA
1 TAAAAAAAACTAACTTAAAA
45109179 CTCATTATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.68, C:0.07, G:0.03, T:0.23
Consensus pattern (21 bp):
TAAAAAAAACTAACTTAAAAT
Found at i:45123733 original size:20 final size:18
Alignment explanation
Indices: 45123708--45123756 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
45123698 TCACTAACCA
*
45123708 TGCTTTTATTCTAATCACTT
1 TGCTTTTATTCT--TCACAT
**
45123728 TGCTTTTAACCTTCACAT
1 TGCTTTTATTCTTCACAT
45123746 TGCTTTTATTC
1 TGCTTTTATTC
45123757 GCTCAATTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
18 14 0.58
20 10 0.42
ACGTcount: A:0.18, C:0.22, G:0.06, T:0.53
Consensus pattern (18 bp):
TGCTTTTATTCTTCACAT
Found at i:45125916 original size:27 final size:27
Alignment explanation
Indices: 45125805--45125906 Score: 102
Period size: 27 Copynumber: 3.8 Consensus size: 27
45125795 TCGTCATGGC
*
45125805 GGACTTCCT-GTGTTTAATGTCCTGAT
1 GGACTACCTCGTGTTTAATGTCCTGAT
* *
45125831 GGACTACCTCGTGTTTAATATCTTGAT
1 GGACTACCTCGTGTTTAATGTCCTGAT
* * *
45125858 AGACT-CCTTTGTGTTTAATGTCCTGGCT
1 GGACTACC-TCGTGTTTAATGTCCT-GAT
*
45125886 -GACTACCTCATGTTTAATGTC
1 GGACTACCTCGTGTTTAATGTC
45125907 TCGGTGGACT
Statistics
Matches: 62, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
26 10 0.16
27 48 0.77
28 4 0.06
ACGTcount: A:0.19, C:0.21, G:0.20, T:0.41
Consensus pattern (27 bp):
GGACTACCTCGTGTTTAATGTCCTGAT
Found at i:45125917 original size:54 final size:53
Alignment explanation
Indices: 45125813--45125925 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 53
45125803 GCGGACTTCC
* *
45125813 TGTGTTTAATGTCCTGATGGACTACCTCGTGTTTAATATCTTGATAGACTCCTT
1 TGTGTTTAATGTCCTGATGGACTACCTCATGTTTAATATCTCGATAGACT-CTT
* * * *
45125867 TGTGTTTAATGTCCTGGCT-GACTACCTCATGTTTAATGTCTCGGTGGACTCTT
1 TGTGTTTAATGTCCT-GATGGACTACCTCATGTTTAATATCTCGATAGACTCTT
*
45125920 TATGTT
1 TGTGTT
45125926 GCCAAGGTCG
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
53 8 0.16
54 41 0.80
55 2 0.04
ACGTcount: A:0.18, C:0.19, G:0.20, T:0.43
Consensus pattern (53 bp):
TGTGTTTAATGTCCTGATGGACTACCTCATGTTTAATATCTCGATAGACTCTT
Found at i:45128621 original size:24 final size:24
Alignment explanation
Indices: 45128571--45128621 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
45128561 AGAGAAGTTT
* *
45128571 CCATGTAGGTTGTGGACAGAGCTA
1 CCATGTAGGTTGTGGACAAAGCCA
*
45128595 CCATGTAGGTTGTGGATAAAGCCA
1 CCATGTAGGTTGTGGACAAAGCCA
45128619 CCA
1 CCA
45128622 ATTCTTCCTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (24 bp):
CCATGTAGGTTGTGGACAAAGCCA
Found at i:45128789 original size:38 final size:37
Alignment explanation
Indices: 45128720--45128813 Score: 134
Period size: 38 Copynumber: 2.5 Consensus size: 37
45128710 TTGTCACATT
* *
45128720 GGGCATGTTGAACATGTAAATCGAATAATATCATGTA
1 GGGCATGTTTAACATGCAAATCGAATAATATCATGTA
* * *
45128757 GGGCGTGTTTTAACATGCAAATCGGATTATATCATGTA
1 GGGCATG-TTTAACATGCAAATCGAATAATATCATGTA
45128795 GGGCATGTTTAACATGCAA
1 GGGCATGTTTAACATGCAA
45128814 TCAAATCTCA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
37 18 0.36
38 32 0.64
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (37 bp):
GGGCATGTTTAACATGCAAATCGAATAATATCATGTA
Found at i:45130293 original size:279 final size:279
Alignment explanation
Indices: 45129793--45130354 Score: 1124
Period size: 279 Copynumber: 2.0 Consensus size: 279
45129783 TACATAGTCA
45129793 TTCAAGTAATAAGTAAGTAAAATGAATTATCGTCTCCACAGGGACTGTGTATGTTAATCGATTAA
1 TTCAAGTAATAAGTAAGTAAAATGAATTATCGTCTCCACAGGGACTGTGTATGTTAATCGATTAA
45129858 TTGCAAAATTATAAATCACTAAAAATTCAATAATTTTGGATAGTGATGATTAAATTAACTAGATG
66 TTGCAAAATTATAAATCACTAAAAATTCAATAATTTTGGATAGTGATGATTAAATTAACTAGATG
45129923 CAAAAATTGACCCCTAATGTAATTTTAATCTAAATACAAATTATCTAAATGTATGAATGAATGGC
131 CAAAAATTGACCCCTAATGTAATTTTAATCTAAATACAAATTATCTAAATGTATGAATGAATGGC
45129988 TTTAGCAACAAAAATAATCAACATGAAATAGGCTAGGATAATTATATTAATAAACTCAATTCATT
196 TTTAGCAACAAAAATAATCAACATGAAATAGGCTAGGATAATTATATTAATAAACTCAATTCATT
45130053 TTCATCATGCTTAACAATG
261 TTCATCATGCTTAACAATG
45130072 TTCAAGTAATAAGTAAGTAAAATGAATTATCGTCTCCACAGGGACTGTGTATGTTAATCGATTAA
1 TTCAAGTAATAAGTAAGTAAAATGAATTATCGTCTCCACAGGGACTGTGTATGTTAATCGATTAA
45130137 TTGCAAAATTATAAATCACTAAAAATTCAATAATTTTGGATAGTGATGATTAAATTAACTAGATG
66 TTGCAAAATTATAAATCACTAAAAATTCAATAATTTTGGATAGTGATGATTAAATTAACTAGATG
45130202 CAAAAATTGACCCCTAATGTAATTTTAATCTAAATACAAATTATCTAAATGTATGAATGAATGGC
131 CAAAAATTGACCCCTAATGTAATTTTAATCTAAATACAAATTATCTAAATGTATGAATGAATGGC
45130267 TTTAGCAACAAAAATAATCAACATGAAATAGGCTAGGATAATTATATTAATAAACTCAATTCATT
196 TTTAGCAACAAAAATAATCAACATGAAATAGGCTAGGATAATTATATTAATAAACTCAATTCATT
45130332 TTCATCATGCTTAACAATG
261 TTCATCATGCTTAACAATG
45130351 TTCA
1 TTCA
45130355 GAAAACATTC
Statistics
Matches: 283, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
279 283 1.00
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.33
Consensus pattern (279 bp):
TTCAAGTAATAAGTAAGTAAAATGAATTATCGTCTCCACAGGGACTGTGTATGTTAATCGATTAA
TTGCAAAATTATAAATCACTAAAAATTCAATAATTTTGGATAGTGATGATTAAATTAACTAGATG
CAAAAATTGACCCCTAATGTAATTTTAATCTAAATACAAATTATCTAAATGTATGAATGAATGGC
TTTAGCAACAAAAATAATCAACATGAAATAGGCTAGGATAATTATATTAATAAACTCAATTCATT
TTCATCATGCTTAACAATG
Found at i:45132811 original size:26 final size:27
Alignment explanation
Indices: 45132782--45132834 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
45132772 ATAACCGTAA
45132782 TGCCCCTAGAGGGTAAATGACT-ATTT
1 TGCCCCTAGAGGGTAAATGACTGATTT
* *
45132808 TGCCCCTCGTGGGTAAATGACTGATTT
1 TGCCCCTAGAGGGTAAATGACTGATTT
45132835 GTGCTATGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.32
Consensus pattern (27 bp):
TGCCCCTAGAGGGTAAATGACTGATTT
Found at i:45138190 original size:19 final size:18
Alignment explanation
Indices: 45138169--45138215 Score: 69
Period size: 19 Copynumber: 2.6 Consensus size: 18
45138159 TTAAACATAA
45138169 AAAAATAAAATTAACATT
1 AAAAATAAAATTAACATT
45138187 AAAAATAGAAATTAA-AGTT
1 AAAAATA-AAATTAACA-TT
45138206 AAAAATAAAA
1 AAAAATAAAA
45138216 ATTTTAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 11 0.41
19 16 0.59
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.23
Consensus pattern (18 bp):
AAAAATAAAATTAACATT
Found at i:45141652 original size:16 final size:16
Alignment explanation
Indices: 45141631--45141662 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
45141621 GTTTTGTTGC
*
45141631 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
45141647 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
45141663 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:45141861 original size:46 final size:43
Alignment explanation
Indices: 45141786--45141884 Score: 117
Period size: 46 Copynumber: 2.2 Consensus size: 43
45141776 AATAATAACA
* *
45141786 GATACACGGTGGGTTCAGCACACAACAACCACCCTTTGTAATCAAT
1 GATAC-CGGTGGGATCAGCACACAACAACCA-CC-TTATAATCAAT
* * *
45141832 GATATCCGGTGGGATCAGCACATAGCAACCACCTTATAATTAAT
1 GATA-CCGGTGGGATCAGCACACAACAACCACCTTATAATCAAT
45141876 GATACCGGT
1 GATACCGGT
45141885 TCACATATTA
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
43 5 0.11
44 13 0.28
45 2 0.04
46 26 0.55
47 1 0.02
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.23
Consensus pattern (43 bp):
GATACCGGTGGGATCAGCACACAACAACCACCTTATAATCAAT
Found at i:45141951 original size:51 final size:51
Alignment explanation
Indices: 45141893--45142080 Score: 249
Period size: 51 Copynumber: 3.7 Consensus size: 51
45141883 GTTCACATAT
* *
45141893 TAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACGTAG
1 TAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGGTACACGTAG
* * *
45141944 TAGCCTGCACATAGTACTACACACGTGATCGA--AGCTATCCGGTACGCATAG
1 TAGCCTGCACATAGTACTACACACGTGA-CCATCA-CTATCCGGTACACGTAG
* * *
45141995 TAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACGTAG
1 TAGCCTGCACATAGTACTACACACGTGACC-ATCACTATCCGGTACACGTAG
45142045 TAGCCTGCACATAGTACTACACACGTGACCATCACT
1 TAGCCTGCACATAGTACTACACACGTGACCATCACT
45142081 TTCACTTTCA
Statistics
Matches: 118, Mismatches: 13, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
49 4 0.03
50 42 0.36
51 69 0.58
52 2 0.02
53 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (51 bp):
TAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGGTACACGTAG
Found at i:45142057 original size:101 final size:102
Alignment explanation
Indices: 45141888--45142072 Score: 311
Period size: 101 Copynumber: 1.8 Consensus size: 102
45141878 TACCGGTTCA
* *
45141888 CATATTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGCCTGCA
45141953 CATAGTACTACACACGTGATCGAAGCTATCCGGTACG
66 CATAGTACTACACACGTGATCGAAGCTATCCGGTACG
* *
45141990 CATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACGTAGTAGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATCCGATACACGTAGTAGCCTGC
45142053 ACATAGTACTACACACGTGA
65 ACATAGTACTACACACGTGA
45142073 CCATCACTTT
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
101 40 0.51
102 34 0.44
103 4 0.05
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGCCTGCA
CATAGTACTACACACGTGATCGAAGCTATCCGGTACG
Found at i:45149177 original size:46 final size:46
Alignment explanation
Indices: 45149125--45149220 Score: 176
Period size: 46 Copynumber: 2.1 Consensus size: 46
45149115 CAATAAAATA
*
45149125 CTCAATTCATAGTATCGTGTTTTTCGACATGTTTTATGGCTATTTT
1 CTCAATTCATAGTATCATGTTTTTCGACATGTTTTATGGCTATTTT
45149171 CTCAATTCATAGTATCATGTTTTTCGACATGTTTTATGGCTATTTT
1 CTCAATTCATAGTATCATGTTTTTCGACATGTTTTATGGCTATTTT
45149217 -TCAA
1 CTCAA
45149221 AAATTTAATA
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
45 4 0.08
46 45 0.92
ACGTcount: A:0.22, C:0.16, G:0.14, T:0.49
Consensus pattern (46 bp):
CTCAATTCATAGTATCATGTTTTTCGACATGTTTTATGGCTATTTT
Found at i:45149217 original size:24 final size:24
Alignment explanation
Indices: 45149144--45149217 Score: 57
Period size: 24 Copynumber: 3.2 Consensus size: 24
45149134 TAGTATCGTG
45149144 TTTTTCGACATGTTTTATGGCTAT
1 TTTTTCGACATGTTTTATGGCTAT
* ** **
45149168 TTTCTC-A-AT-TCATA-GTATCAT
1 TTTTTCGACATGTTTTATGGCT-AT
45149189 GTTTTTCGACATGTTTTATGGCTAT
1 -TTTTTCGACATGTTTTATGGCTAT
45149214 TTTT
1 TTTT
45149218 CAAAAATTTA
Statistics
Matches: 34, Mismatches: 10, Indels: 12
0.61 0.18 0.21
Matches are distributed among these distances:
20 2 0.06
21 5 0.15
22 7 0.21
23 2 0.06
24 11 0.32
25 5 0.15
26 2 0.06
ACGTcount: A:0.19, C:0.14, G:0.14, T:0.54
Consensus pattern (24 bp):
TTTTTCGACATGTTTTATGGCTAT
Found at i:45151682 original size:7 final size:7
Alignment explanation
Indices: 45151672--45151712 Score: 73
Period size: 7 Copynumber: 5.9 Consensus size: 7
45151662 ATAAATCACA
45151672 AATAAAG
1 AATAAAG
45151679 AATAAAG
1 AATAAAG
*
45151686 AATAAAA
1 AATAAAG
45151693 AATAAAG
1 AATAAAG
45151700 AATAAAG
1 AATAAAG
45151707 AATAAA
1 AATAAA
45151713 TTAGTAATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.15
Consensus pattern (7 bp):
AATAAAG
Found at i:45151697 original size:21 final size:21
Alignment explanation
Indices: 45151671--45151712 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
45151661 AATAAATCAC
45151671 AAATAAAGAATAAAGAATAAA
1 AAATAAAGAATAAAGAATAAA
45151692 AAATAAAGAATAAAGAATAAA
1 AAATAAAGAATAAAGAATAAA
45151713 TTAGTAATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.14
Consensus pattern (21 bp):
AAATAAAGAATAAAGAATAAA
Found at i:45153833 original size:12 final size:12
Alignment explanation
Indices: 45153816--45153855 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
45153806 GTGGCACAAA
45153816 GTGGTGGTTATG
1 GTGGTGGTTATG
45153828 GTGGTGGTTATG
1 GTGGTGGTTATG
45153840 GTGGT-G-TATG
1 GTGGTGGTTATG
45153850 GTGGTG
1 GTGGTG
45153856 CAAGGGGCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.33
11 1 0.04
12 17 0.63
ACGTcount: A:0.07, C:0.00, G:0.53, T:0.40
Consensus pattern (12 bp):
GTGGTGGTTATG
Found at i:45163500 original size:26 final size:26
Alignment explanation
Indices: 45163471--45163532 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
45163461 TACCTACAGT
45163471 AGTTTCAGAATATCATAACATATATC
1 AGTTTCAGAATATCATAACATATATC
* *
45163497 AGTTTCAGAATATCATAGCATGTATC
1 AGTTTCAGAATATCATAACATATATC
45163523 AGTTTCAGAA
1 AGTTTCAGAA
45163533 CACTTACAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.34
Consensus pattern (26 bp):
AGTTTCAGAATATCATAACATATATC
Found at i:45165905 original size:15 final size:15
Alignment explanation
Indices: 45165885--45165936 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
45165875 ACTACAAAAC
45165885 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
45165900 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
45165919 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
45165934 ATT
1 ATT
45165937 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:45166065 original size:16 final size:16
Alignment explanation
Indices: 45166024--45166058 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
45166014 TGAAATATTA
*
45166024 AATAACTTATTAAAAT
1 AATAAATTATTAAAAT
*
45166040 AATAAATTATTAATAT
1 AATAAATTATTAAAAT
45166056 AAT
1 AAT
45166059 TTATTATATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (16 bp):
AATAAATTATTAAAAT
Found at i:45167790 original size:45 final size:45
Alignment explanation
Indices: 45167723--45167815 Score: 159
Period size: 45 Copynumber: 2.1 Consensus size: 45
45167713 TCACACTTTG
* * *
45167723 TATTTTTGGCACCACTTCTTTCCTATTTCGCATGCTAGCCCATTT
1 TATTTTTGGCACCACTTATTTCCTATCTCGCATACTAGCCCATTT
45167768 TATTTTTGGCACCACTTATTTCCTATCTCGCATACTAGCCCATTT
1 TATTTTTGGCACCACTTATTTCCTATCTCGCATACTAGCCCATTT
45167813 TAT
1 TAT
45167816 CTTTAAATTC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.18, C:0.28, G:0.10, T:0.44
Consensus pattern (45 bp):
TATTTTTGGCACCACTTATTTCCTATCTCGCATACTAGCCCATTT
Found at i:45178228 original size:11 final size:11
Alignment explanation
Indices: 45178214--45178243 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
45178204 TCTTCATTAC
45178214 TTTTGTTTTTT
1 TTTTGTTTTTT
45178225 TTTTGTTTTTT
1 TTTTGTTTTTT
45178236 TTTTGTTT
1 TTTTGTTT
45178244 CTTTAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (11 bp):
TTTTGTTTTTT
Found at i:45180012 original size:16 final size:16
Alignment explanation
Indices: 45179991--45180031 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
45179981 TCTCATAAGG
45179991 CGTACTCTTCGTTTTT
1 CGTACTCTTCGTTTTT
45180007 CGTACTCTTCGTTTTT
1 CGTACTCTTCGTTTTT
*
45180023 CATACTCTT
1 CGTACTCTT
45180032 TCTTCAGTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.10, C:0.27, G:0.10, T:0.54
Consensus pattern (16 bp):
CGTACTCTTCGTTTTT
Found at i:45181267 original size:18 final size:17
Alignment explanation
Indices: 45181246--45181279 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
45181236 GAAACTTTGG
45181246 AATTTTAATTATTTTTTT
1 AATTTTAATT-TTTTTTT
*
45181264 AATTTTTATTTTTTTT
1 AATTTTAATTTTTTTT
45181280 ATTTTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (17 bp):
AATTTTAATTTTTTTTT
Done.