Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 149 of 240
Found at i:46766674 original size:28 final size:30
Alignment explanation
Indices: 46766620--46766680 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 30
46766610 TTAACAGAAA
*
46766620 AATTAATTTATATAGTTTTAACATAAA-AG
1 AATTAATTTATATAGTTTTAAAATAAATAG
46766649 AATTAATTTATCA-A-TTTTAAAATAAATAG
1 AATTAATTTAT-ATAGTTTTAAAATAAATAG
46766678 AAT
1 AAT
46766681 AATATGCAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 11 0.38
29 17 0.59
30 1 0.03
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (30 bp):
AATTAATTTATATAGTTTTAAAATAAATAG
Found at i:46771990 original size:5 final size:5
Alignment explanation
Indices: 46771980--46772009 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
46771970 AATTATATTG
46771980 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
46772010 TATGAGTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:46780247 original size:26 final size:26
Alignment explanation
Indices: 46780217--46780270 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
46780207 TTTGAAATTT
46780217 TTCGAATCGAGTT-AAGCAAAATAAAA
1 TTCGAATCGAGTTGAAGC-AAATAAAA
* *
46780243 TTCGATTCGAGTTGAATCAAATAAAA
1 TTCGAATCGAGTTGAAGCAAATAAAA
46780269 TT
1 TT
46780271 GTTTGAGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.30
Consensus pattern (26 bp):
TTCGAATCGAGTTGAAGCAAATAAAA
Found at i:46790637 original size:28 final size:28
Alignment explanation
Indices: 46790574--46790724 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
46790564 ATATTAAGTC
*
46790574 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
46790601 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
46790629 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
46790657 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
46790685 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
46790714 CGCACACTTAG
1 CGCACACTTAG
46790725 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.19
28 75 0.66
29 16 0.14
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:46798857 original size:28 final size:28
Alignment explanation
Indices: 46798794--46798947 Score: 265
Period size: 28 Copynumber: 5.5 Consensus size: 28
46798784 ATATTAAGTC
* *
46798794 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
46798821 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
46798849 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
46798877 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
46798905 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
46798933 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46798948 GTACAATTTA
Statistics
Matches: 123, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
27 22 0.18
28 101 0.82
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:46801101 original size:3 final size:3
Alignment explanation
Indices: 46801095--46801121 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
46801085 AAAAAATTCA
46801095 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
46801122 TTGGTATAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:46802416 original size:20 final size:19
Alignment explanation
Indices: 46802393--46802433 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
46802383 ATAAAATTAT
46802393 ATTTAATTTTAACCCCTAAC
1 ATTT-ATTTTAACCCCTAAC
*
46802413 ATTTTTTTTAACCCCTAAC
1 ATTTATTTTAACCCCTAAC
46802432 AT
1 AT
46802434 CTTTTTCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.32, C:0.24, G:0.00, T:0.44
Consensus pattern (19 bp):
ATTTATTTTAACCCCTAAC
Found at i:46802423 original size:19 final size:20
Alignment explanation
Indices: 46802399--46802439 Score: 75
Period size: 19 Copynumber: 2.1 Consensus size: 20
46802389 TTATATTTAA
46802399 TTTTAACCCCTAACAT-TTT
1 TTTTAACCCCTAACATCTTT
46802418 TTTTAACCCCTAACATCTTT
1 TTTTAACCCCTAACATCTTT
46802438 TT
1 TT
46802440 CTAAGTTCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.24, C:0.27, G:0.00, T:0.49
Consensus pattern (20 bp):
TTTTAACCCCTAACATCTTT
Found at i:46818138 original size:13 final size:13
Alignment explanation
Indices: 46818120--46818144 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46818110 CCAAAAAAAA
46818120 TTTTAATTTTAAT
1 TTTTAATTTTAAT
46818133 TTTTAATTTTAA
1 TTTTAATTTTAA
46818145 GTTAATTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTTAATTTTAAT
Found at i:46830708 original size:19 final size:19
Alignment explanation
Indices: 46830686--46830737 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
46830676 TCAATGAATT
46830686 TTTTATAATATATTTTT-TA
1 TTTT-TAATATATTTTTATA
46830705 TTTTTAA-ATATTTTTATA
1 TTTTTAATATATTTTTATA
*
46830723 TTTTTTAATTTATTT
1 -TTTTTAATATATTT
46830738 ATTAACATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 8 0.28
18 5 0.17
19 11 0.38
20 5 0.17
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTTTAATATATTTTTATA
Found at i:46830724 original size:18 final size:20
Alignment explanation
Indices: 46830685--46830737 Score: 67
Period size: 18 Copynumber: 2.8 Consensus size: 20
46830675 TTCAATGAAT
*
46830685 TTTTTATAATATATTTTTTA
1 TTTTTATAATATATTTTATA
46830705 TTTTTA-AATAT-TTTTATA
1 TTTTTATAATATATTTTATA
*
46830723 TTTTT-TAATTTATTT
1 TTTTTATAATATATTT
46830738 ATTAACATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
18 15 0.52
19 8 0.28
20 6 0.21
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (20 bp):
TTTTTATAATATATTTTATA
Found at i:46831012 original size:21 final size:20
Alignment explanation
Indices: 46830970--46831012 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
46830960 TCTTTCATGG
*
46830970 ATTAGCCATTGAAATTATAA
1 ATTAGCCATTGAAATAATAA
46830990 ATTAGCTCATCTG-AATAATAA
1 ATTAGC-CAT-TGAAATAATAA
46831011 AT
1 AT
46831013 GATCGCAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 6 0.30
21 12 0.60
22 2 0.10
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.35
Consensus pattern (20 bp):
ATTAGCCATTGAAATAATAA
Found at i:46832786 original size:23 final size:25
Alignment explanation
Indices: 46832733--46832783 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
46832723 AATTAGATCC
46832733 TATCATTTTTATTCATTCTAAAAAA
1 TATCATTTTTATTCATTCTAAAAAA
**
46832758 TATCATTTTTATTTGTTCTAAAAAA
1 TATCATTTTTATTCATTCTAAAAAA
46832783 T
1 T
46832784 CATCTTTCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.10, G:0.02, T:0.51
Consensus pattern (25 bp):
TATCATTTTTATTCATTCTAAAAAA
Found at i:46834455 original size:22 final size:21
Alignment explanation
Indices: 46834428--46834482 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
46834418 ATGGCCTTAG
* *
46834428 TTTTTTCCCTGAAATCCCTAAT
1 TTTTTTCCC-CAAATCCCTAAC
*
46834450 TTTTTTCCCCAAATCCCTTAC
1 TTTTTTCCCCAAATCCCTAAC
46834471 TTTTTTCCCCAA
1 TTTTTTCCCCAA
46834483 CGTCTGCTGC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 21 0.70
22 9 0.30
ACGTcount: A:0.20, C:0.33, G:0.02, T:0.45
Consensus pattern (21 bp):
TTTTTTCCCCAAATCCCTAAC
Found at i:46835769 original size:112 final size:112
Alignment explanation
Indices: 46835543--46835834 Score: 256
Period size: 112 Copynumber: 2.6 Consensus size: 112
46835533 AGATCTGAAG
* *
46835543 ACCAAAACGCATCGTTTTGGTCTTGATGTATACTAGAATTAGTGGCGTTTATGATAAAACGCCGC
1 ACCAAAACGCATCGTTTTGGTC-TGATGTATACTAGAATTAGTGGCGCTTACGATAAAACGCCGC
* * * **
46835608 TAAAGGAAGTATTAGCGGTGCATTGTCGCAAGCGCCGCAAAAACCTTA
65 TAAAGCAAGTATTAGCGGCGCATTCTCAAAAGCGCCGCAAAAACCTTA
* * * * * *
46835656 ACGAAAACGCATTGTTTTGTGTC-GCTGTATATTAGCATTAGTGGCGCTTACGA-AAATCCGCCG
1 ACCAAAACGCATCGTTTTG-GTCTGATGTATACTAGAATTAGTGGCGCTTACGATAAA-ACGCCG
* **
46835719 CTAAAGCAAGTATTAGCGGCGC-TTACT-AAAAGCGCCGCAATATATGTTA
64 CTAAAGCAAGTATTAGCGGCGCATT-CTCAAAAGCGCCGCAA-AAACCTTA
** * ** * **
46835768 ACCAAAACGCAGAG-TTTGGTCTAGAGGTATGTTAGAATTTA-TGGCGCTTATGGGAAAACGCCG
1 ACCAAAACGCATCGTTTTGGTCT-GATGTATACTAGAA-TTAGTGGCGCTTACGATAAAACGCCG
46835831 -TAAA
64 CTAAA
46835835 ATATCCTAAC
Statistics
Matches: 145, Mismatches: 26, Indels: 18
0.77 0.14 0.10
Matches are distributed among these distances:
110 3 0.02
111 24 0.17
112 92 0.63
113 23 0.16
114 3 0.02
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (112 bp):
ACCAAAACGCATCGTTTTGGTCTGATGTATACTAGAATTAGTGGCGCTTACGATAAAACGCCGCT
AAAGCAAGTATTAGCGGCGCATTCTCAAAAGCGCCGCAAAAACCTTA
Found at i:46836374 original size:115 final size:113
Alignment explanation
Indices: 46835826--46836439 Score: 472
Period size: 115 Copynumber: 5.4 Consensus size: 113
46835816 TATGGGAAAA
* * ** * ** * *
46835826 CGCCGTAAAATATCCTAACCAAAGTGCACCGTTTTGGTCTTG-GTGTATGTTACAGTTAGTGGCG
1 CGCCGCAAAATATCTTAACCAAAACGCAACGTTTT-GTCTTGAG-GTATACTAGAATTAGTGGCG
* * * * * * *
46835890 TTTAAGGGAAAACGCAGCTAAAGCATAATATTAGTGGCG-TTTTGTGTGAAG
64 -CTATGAGAAAACGCCGCTAAAGCATACTATTAGCGGCGCTTTT-TGAGAAG
* * *
46835941 CGCCACAAAATATCTTAACCAAAATGCAGA-GTTTGGTCTTGAGGTATACTAGAATTAGTGGCGC
1 CGCCGCAAAATATCTTAACCAAAACGCA-ACGTTTTGTCTTGAGGTATACTAGAATTAGTGGCGC
* * * **
46836005 AAAG-GAAACACGCCGCTAAGGCATACTATTAGCGGCGCTTTCAGAGAAG
65 TATGAGAAA-ACGCCGCTAAAGCATACTATTAGCGGCGCTTTTTGAGAAG
* ** * * *
46836054 CGCCGCAAAATTTGGTAACCAAAACGCAACGTTTTTGTCTTGATGTATA-TAGTTATTAGTGGTG
1 CGCCGCAAAATATCTTAACCAAAACGCAACG-TTTTGTCTTGAGGTATACTAG-AATTAGTGGCG
* * * * * * **** *
46836118 AATATTAAAAAAACACCGCTAAATCATAGC-ATTAGCGACGCTTGGCAAAAAG
64 -CTA-TGAGAAAACGCCGCTAAAGCATA-CTATTAGCGGCGCTTTTTGAGAAG
* * * *
46836170 CGCCGCAAAATATGC-TCACCAAAACGCAAAGTTTTTTCATT-AGGTATATTAGAATTAGTGGCG
1 CGCCGCAAAATAT-CTTAACCAAAACGCAACGTTTTGTC-TTGAGGTATACTAGAATTAGTGGCG
* * *
46836233 CTTATGGGAGAACGCCGCTAAAGCATACTATTAGCGGTGCTTTTTGAGAAG
64 C-TATGAGAAAACGCCGCTAAAGCATACTATTAGCGGCGCTTTTTGAGAAG
* * * * *
46836284 CGCCGCAAAATATATTAACAAAAACGCAACGTTTAAGTCTTGATGTATACTGGAATTAGTGGCGT
1 CGCCGCAAAATATCTTAACCAAAACGCAACGTTT-TGTCTTGAGGTATACTAGAATTAGTGGCG-
* * * *
46836349 CCACGAGAAATCGCCGCTAAAGCATAGTATTAGCGGCGCTTTTTGAGAAG
64 CTATGAGAAAACGCCGCTAAAGCATACTATTAGCGGCGCTTTTTGAGAAG
* *
46836399 CACCGGAAAATATCTTAACCAAAACGCAGA-GTTTTGGTCTT
1 CGCCGCAAAATATCTTAACCAAAACGCA-ACGTTTT-GTCTT
46836440 AACCATGCAT
Statistics
Matches: 392, Mismatches: 85, Indels: 44
0.75 0.16 0.08
Matches are distributed among these distances:
112 5 0.01
113 60 0.15
114 112 0.29
115 149 0.38
116 62 0.16
117 4 0.01
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (113 bp):
CGCCGCAAAATATCTTAACCAAAACGCAACGTTTTGTCTTGAGGTATACTAGAATTAGTGGCGCT
ATGAGAAAACGCCGCTAAAGCATACTATTAGCGGCGCTTTTTGAGAAG
Found at i:46841040 original size:36 final size:36
Alignment explanation
Indices: 46841001--46841612 Score: 626
Period size: 36 Copynumber: 17.5 Consensus size: 36
46840991 AAAAATTAAA
* * *
46841001 TAACTTACATAACTTACATAAATTA-AGTAACTTACA
1 TAACTTACATAACTTACATAACTTACA-TAAATTAAA
* * * * *
46841037 TAACTTACAAAAATTAAATAACTTACATAACTTACA
1 TAACTTACATAACTTACATAACTTACATAAATTAAA
* * * *
46841073 TAAATTAAATATCTTACATAACTTACATAAATTAAG
1 TAACTTACATAACTTACATAACTTACATAAATTAAA
* *
46841109 TAACTTATATAACTTACATAAATTA-AGTAAATTAAA
1 TAACTTACATAACTTACATAACTTACA-TAAATTAAA
* * *
46841145 TAACTTACATAACTTAAATAACTTACATAACTTACA
1 TAACTTACATAACTTACATAACTTACATAAATTAAA
* * * *
46841181 TAAATTAAATATCTTACATAACTTACATAAATTAAG
1 TAACTTACATAACTTACATAACTTACATAAATTAAA
* *
46841217 TAACTTACATAGCTTACATAACTTACATAAATTAAG
1 TAACTTACATAACTTACATAACTTACATAAATTAAA
*
46841253 TAACTTACATAACTTACATAAATTA-AGTAAATTAAA
1 TAACTTACATAACTTACATAACTTACA-TAAATTAAA
* * * *
46841289 TAACTTACATAACTTACATAAATTAAATAACTTACA
1 TAACTTACATAACTTACATAACTTACATAAATTAAA
* * *
46841325 TAAATTAAAT-ATTTACATAACTTACATAAATT--A
1 TAACTTACATAACTTACATAACTTACATAAATTAAA
*
46841358 -AA--T--AT--CTTACATAACTTACATAAATTAAG
1 TAACTTACATAACTTACATAACTTACATAAATTAAA
* *
46841387 TAACTTACATAGCTTACATAACTTACATAAATTAAG
1 TAACTTACATAACTTACATAACTTACATAAATTAAA
*
46841423 TAACTTACATAACTTACATAAATTA-AGTAAA-T---
1 TAACTTACATAACTTACATAACTTACA-TAAATTAAA
46841455 T-A---A-ATAACTTACATAACTTACATAAATTAAA
1 TAACTTACATAACTTACATAACTTACATAAATTAAA
*
46841486 TAACTTACATAACTTAAATAACTTACATAAATTAAA
1 TAACTTACATAACTTACATAACTTACATAAATTAAA
* *
46841522 TAACTTACATAAATTA-AGTAACTTACATAACTTAAA
1 TAACTTACATAACTTACA-TAACTTACATAAATTAAA
*
46841558 TAAATTA-AGTAACTTACATAACTTACATAAATTAAA
1 TAACTTACA-TAACTTACATAACTTACATAAATTAAA
**
46841594 TAACTGGCATAACTTACAT
1 TAACTTACATAACTTACAT
46841613 TATACATAAC
Statistics
Matches: 489, Mismatches: 58, Indels: 58
0.81 0.10 0.10
Matches are distributed among these distances:
27 40 0.08
28 5 0.01
30 3 0.01
31 2 0.00
32 5 0.01
33 1 0.00
34 2 0.00
35 25 0.05
36 401 0.82
37 5 0.01
ACGTcount: A:0.50, C:0.14, G:0.02, T:0.34
Consensus pattern (36 bp):
TAACTTACATAACTTACATAACTTACATAAATTAAA
Found at i:46841605 original size:18 final size:18
Alignment explanation
Indices: 46840957--46841598 Score: 533
Period size: 18 Copynumber: 35.7 Consensus size: 18
46840947 TAGGTATCAC
46840957 AAATTAAATAACTTACAT
1 AAATTAAATAACTTACAT
* * * * *
46840975 TAATTACACAACGTACAA
1 AAATTAAATAACTTACAT
46840993 AAATTAAATAACTTACAT
1 AAATTAAATAACTTACAT
* * *
46841011 AACTTACATAAATTA-AGT
1 AAATTAAATAACTTACA-T
* * *
46841029 AACTTACATAACTTACAA
1 AAATTAAATAACTTACAT
46841047 AAATTAAATAACTTACAT
1 AAATTAAATAACTTACAT
* * * *
46841065 AACTTACATAAATTAAAT
1 AAATTAAATAACTTACAT
** *
46841083 ATCTTACATAACTTACAT
1 AAATTAAATAACTTACAT
* *
46841101 AAATTAAGTAACTTATAT
1 AAATTAAATAACTTACAT
* * *
46841119 AACTTACATAAATTA-AGT
1 AAATTAAATAACTTACA-T
46841137 AAATTAAATAACTTACAT
1 AAATTAAATAACTTACAT
*
46841155 AACTTAAATAACTTACAT
1 AAATTAAATAACTTACAT
* * * *
46841173 AACTTACATAAATTAAAT
1 AAATTAAATAACTTACAT
** *
46841191 ATCTTACATAACTTACAT
1 AAATTAAATAACTTACAT
*
46841209 AAATTAAGTAACTTACAT
1 AAATTAAATAACTTACAT
** *
46841227 AGCTTACATAACTTACAT
1 AAATTAAATAACTTACAT
*
46841245 AAATTAAGTAACTTACAT
1 AAATTAAATAACTTACAT
* * *
46841263 AACTTACATAAATTA-AGT
1 AAATTAAATAACTTACA-T
46841281 AAATTAAATAACTTACAT
1 AAATTAAATAACTTACAT
* * * *
46841299 AACTTACATAAATTAAAT
1 AAATTAAATAACTTACAT
* * * *
46841317 AACTTACATAAATTAAAT
1 AAATTAAATAACTTACAT
* *
46841335 -ATTTACATAACTTACAT
1 AAATTAAATAACTTACAT
*
46841352 AAATTAAATATCTTACAT
1 AAATTAAATAACTTACAT
* * *
46841370 AACTTACATAAATTA-AGT
1 AAATTAAATAACTTACA-T
* * *
46841388 AACTTACATAGCTTACAT
1 AAATTAAATAACTTACAT
* * *
46841406 AACTTACATAAATTA-AGT
1 AAATTAAATAACTTACA-T
* *
46841424 AACTTACATAACTTACAT
1 AAATTAAATAACTTACAT
* * *
46841442 AAATTAAGTAAATTAAAT
1 AAATTAAATAACTTACAT
* *
46841460 AACTTACATAACTTACAT
1 AAATTAAATAACTTACAT
46841478 AAATTAAATAACTTACAT
1 AAATTAAATAACTTACAT
*
46841496 AACTTAAATAACTTACAT
1 AAATTAAATAACTTACAT
46841514 AAATTAAATAACTTACAT
1 AAATTAAATAACTTACAT
*
46841532 AAATTAAGTAACTTACAT
1 AAATTAAATAACTTACAT
* *
46841550 AACTTAAATAAATTA-AGT
1 AAATTAAATAACTTACA-T
* *
46841568 AACTTACATAACTTACAT
1 AAATTAAATAACTTACAT
46841586 AAATTAAATAACT
1 AAATTAAATAACT
46841599 GGCATAACTT
Statistics
Matches: 507, Mismatches: 104, Indels: 26
0.80 0.16 0.04
Matches are distributed among these distances:
17 20 0.04
18 481 0.95
19 6 0.01
ACGTcount: A:0.50, C:0.14, G:0.02, T:0.34
Consensus pattern (18 bp):
AAATTAAATAACTTACAT
Found at i:46841612 original size:27 final size:27
Alignment explanation
Indices: 46840978--46841598 Score: 654
Period size: 27 Copynumber: 22.4 Consensus size: 27
46840968 CTTACATTAA
* * *
46840978 TTACACAACGTACAAAAATTAAATAAC
1 TTACATAACTTACATAAATTAAATAAC
*
46841005 TTACATAACTTACATAAATTAAGTAAC
1 TTACATAACTTACATAAATTAAATAAC
*
46841032 TTACATAACTTACAAAAATTAAATAAC
1 TTACATAACTTACATAAATTAAATAAC
*
46841059 TTACATAACTTACATAAATTAAATATC
1 TTACATAACTTACATAAATTAAATAAC
*
46841086 TTACATAACTTACATAAATTAAGTAAC
1 TTACATAACTTACATAAATTAAATAAC
* * *
46841113 TTATATAACTTACATAAATTAAGTAAA
1 TTACATAACTTACATAAATTAAATAAC
* *
46841140 TTAAATAACTTACATAACTTAAATAAC
1 TTACATAACTTACATAAATTAAATAAC
*
46841167 TTACATAACTTACATAAATTAAATATC
1 TTACATAACTTACATAAATTAAATAAC
46841194 TTACATAACTTACATAAATTAAGTAACTTACATAGC
1 TTACATAACTTACATAAATT-A--AA--T--A-A-C
*
46841230 TTACATAACTTACATAAATTAAGTAAC
1 TTACATAACTTACATAAATTAAATAAC
* *
46841257 TTACATAACTTACATAAATTAAGTAAA
1 TTACATAACTTACATAAATTAAATAAC
* * * *
46841284 TTAAATAACTTACATAACTTACATAAA
1 TTACATAACTTACATAAATTAAATAAC
* *
46841311 TTAAATAACTTACATAAATTAAAT-AT
1 TTACATAACTTACATAAATTAAATAAC
*
46841337 TTACATAACTTACATAAATTAAATATC
1 TTACATAACTTACATAAATTAAATAAC
46841364 TTACATAACTTACATAAATTAAGTAACTTACATAGC
1 TTACATAACTTACATAAATT-A--AA--T--A-A-C
*
46841400 TTACATAACTTACATAAATTAAGTAAC
1 TTACATAACTTACATAAATTAAATAAC
* *
46841427 TTACATAACTTACATAAATTAAGTAAA
1 TTACATAACTTACATAAATTAAATAAC
* * * *
46841454 TTAAATAACTTACATAACTTACATAAA
1 TTACATAACTTACATAAATTAAATAAC
* *
46841481 TTAAATAACTTACATAACTTAAATAAC
1 TTACATAACTTACATAAATTAAATAAC
* * * * *
46841508 TTACATAAATTAAATAACTTACATAAA
1 TTACATAACTTACATAAATTAAATAAC
* *
46841535 TTA-AGTAACTTACATAACTTAAATAAA
1 TTACA-TAACTTACATAAATTAAATAAC
* * *
46841562 TTA-AGTAACTTACATAACTTACATAAA
1 TTACA-TAACTTACATAAATTAAATAAC
*
46841589 TTAAATAACT
1 TTACATAACT
46841599 GGCATAACTT
Statistics
Matches: 523, Mismatches: 50, Indels: 42
0.85 0.08 0.07
Matches are distributed among these distances:
26 25 0.05
27 435 0.83
28 5 0.01
29 2 0.00
30 4 0.01
31 2 0.00
32 2 0.00
33 2 0.00
34 2 0.00
35 2 0.00
36 42 0.08
ACGTcount: A:0.50, C:0.14, G:0.02, T:0.34
Consensus pattern (27 bp):
TTACATAACTTACATAAATTAAATAAC
Found at i:46841656 original size:25 final size:25
Alignment explanation
Indices: 46841601--46841656 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
46841591 AAATAACTGG
* *
46841601 CATAACTTACATTATACATAACCTT
1 CATAACTTACATTATACACAACCTA
*
46841626 CTTAACTTACATTATACACAA-CTCA
1 CATAACTTACATTATACACAACCT-A
46841651 CATAAC
1 CATAAC
46841657 GATGTAGTAC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 2 0.08
25 24 0.92
ACGTcount: A:0.41, C:0.27, G:0.00, T:0.32
Consensus pattern (25 bp):
CATAACTTACATTATACACAACCTA
Found at i:46841727 original size:7 final size:7
Alignment explanation
Indices: 46841717--46841754 Score: 58
Period size: 7 Copynumber: 5.1 Consensus size: 7
46841707 TGCATGAGGC
46841717 ATACATA
1 ATACATA
46841724 ATACATA
1 ATACATA
46841731 ATACATA
1 ATACATA
46841738 ACTTACATA
1 A--TACATA
46841747 ATACATA
1 ATACATA
46841754 A
1 A
46841755 AAATATATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 22 0.76
9 7 0.24
ACGTcount: A:0.55, C:0.16, G:0.00, T:0.29
Consensus pattern (7 bp):
ATACATA
Found at i:46841746 original size:16 final size:14
Alignment explanation
Indices: 46841717--46841754 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 14
46841707 TGCATGAGGC
46841717 ATACATAATACATA
1 ATACATAATACATA
46841731 ATACATAACTTACATA
1 ATACATAA--TACATA
46841747 ATACATAA
1 ATACATAA
46841755 AAATATATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 8 0.36
16 14 0.64
ACGTcount: A:0.55, C:0.16, G:0.00, T:0.29
Consensus pattern (14 bp):
ATACATAATACATA
Found at i:46847307 original size:21 final size:21
Alignment explanation
Indices: 46847258--46847308 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
46847248 CTACAACTTA
* *
46847258 AAGCAGACGCGGCAGCGAGGG
1 AAGCAGAGGCGGCAGCGAGAG
* *
46847279 AAGCAGAGGCTGCAGTGAGAG
1 AAGCAGAGGCGGCAGCGAGAG
46847300 AAGCAGAGG
1 AAGCAGAGG
46847309 TTCAAAAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.33, C:0.18, G:0.45, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCGAGAG
Found at i:46847763 original size:43 final size:43
Alignment explanation
Indices: 46847680--46847881 Score: 176
Period size: 42 Copynumber: 4.7 Consensus size: 43
46847670 AATAGTGGCA
* * * ** * *
46847680 TTTTTGTACAAAAGCGCCGCTAAATATTATGATCTATAGCGGCG
1 TTTTTATA-AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG
* * *
46847724 TTTTTATACAAAGCGCCGTTAAAGAACATGTTCTTTAGCGGCG
1 TTTTTATAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG
* * * * *
46847767 -CTTAATAAAAAACGCCACTAAAGATCATGTTCTTTAGCGGCA
1 TTTTTATAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG
* * * *
46847809 CTTATA-AAAAAACGCCGCTAAAGAACATGTTCTTCAGTGGCG
1 TTTTTATAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG
* **
46847851 CTTAGA-AAAAAACGCCGCTAAAGAACATGTT
1 TTTTTATAAAAAACGCCGCTAAAGAACATGTT
46847882 GCGCCGCTGA
Statistics
Matches: 132, Mismatches: 25, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
42 95 0.72
43 30 0.23
44 7 0.05
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (43 bp):
TTTTTATAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG
Found at i:46847796 original size:42 final size:42
Alignment explanation
Indices: 46847737--46847881 Score: 204
Period size: 42 Copynumber: 3.5 Consensus size: 42
46847727 TTATACAAAG
*
46847737 CGCCGTTAAAGAACATGTTCTTTAGCGGCGCTTAATAAAAAA
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAATAAAAAA
* * *
46847779 CGCCACTAAAGATCATGTTCTTTAGCGGCACTT-ATAAAAAAA
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAAT-AAAAAA
* *
46847821 CGCCGCTAAAGAACATGTTCTTCAGTGGCGCTTAGA-AAAAAA
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTA-ATAAAAAA
46847863 CGCCGCTAAAGAACATGTT
1 CGCCGCTAAAGAACATGTT
46847882 GCGCCGCTGA
Statistics
Matches: 91, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
41 2 0.02
42 88 0.97
44 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAATAAAAAA
Found at i:46848557 original size:43 final size:42
Alignment explanation
Indices: 46848500--46848707 Score: 172
Period size: 43 Copynumber: 4.9 Consensus size: 42
46848490 GGTCAGGGTC
**
46848500 TTTAGCGGCG-TTTTTGGAAAAGCACCGCTAAAGACCCTGACA
1 TTTAGCGGCGCTTTTTCCAAAA-CACCGCTAAAGACCCTGACA
* *
46848542 TTTAGCGACGCTTTTTCCACAATCACCGCTAAAGACCAC-GATC-
1 TTTAGCGGCGCTTTTTCCA-AAACACCGCTAAAGACC-CTGA-CA
* *
46848585 TTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGACCATGACA
1 TTTAGCGGCGCTTTTTCCA-AAACACCGCTAAAGACCCTGACA
** * * * *
46848628 TTTAGCGGCGCTTTGCCCACAAACGCCACTAAAGACCAC-AACC
1 TTTAGCGGCGCTTTTTCCA-AAACACCGCTAAAGACC-CTGACA
* * * *
46848671 TTTAGCGACACTTTTTCCACAAACGCCACTAAAGACC
1 TTTAGCGGCGCTTTTTCCA-AAACACCGCTAAAGACC
46848708 ACAACCTTTA
Statistics
Matches: 141, Mismatches: 18, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
42 10 0.07
43 127 0.90
44 4 0.03
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (42 bp):
TTTAGCGGCGCTTTTTCCAAAACACCGCTAAAGACCCTGACA
Found at i:46848620 original size:86 final size:86
Alignment explanation
Indices: 46848498--46848708 Score: 264
Period size: 86 Copynumber: 2.5 Consensus size: 86
46848488 AAGGTCAGGG
** * * **
46848498 TCTTTAGCGGCG-TTTTTGGA-AAAGCACCGCTAAAGACCCTGACATTTAGCGACGCTTTTTCCA
1 TCTTTAGCGGCGCTTTTTCCACAAA-CGCCGCTAAAGACCATGACATTTAGCGACGCTTTGCCCA
* * *
46848561 CAATCACCGCTAAAGACCACGA
65 CAAACACCACTAAAGACCACAA
*
46848583 TCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGACCATGACATTTAGCGGCGCTTTGCCCAC
1 TCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGACCATGACATTTAGCGACGCTTTGCCCAC
*
46848648 AAACGCCACTAAAGACCACAA
66 AAACACCACTAAAGACCACAA
* * * *
46848669 CCTTTAGCGACACTTTTTCCACAAACGCCACTAAAGACCA
1 TCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGACCA
46848709 CAACCTTTAG
Statistics
Matches: 109, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
85 12 0.11
86 94 0.86
87 3 0.03
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (86 bp):
TCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGACCATGACATTTAGCGACGCTTTGCCCAC
AAACACCACTAAAGACCACAA
Found at i:46848708 original size:43 final size:43
Alignment explanation
Indices: 46848542--46848720 Score: 232
Period size: 43 Copynumber: 4.2 Consensus size: 43
46848532 GACCCTGACA
* * * * *
46848542 TTTAGCGACGCTTTTTCCACAATCACCGCTAAAGACCACGATC
1 TTTAGCGACGCTTTTTCCACAAACGCCACTAAAGACCACAACC
* * ** *
46848585 TTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGACCATGACA
1 TTTAGCGACGCTTTTTCCACAAACGCCACTAAAGACCACAACC
* **
46848628 TTTAGCGGCGCTTTGCCCACAAACGCCACTAAAGACCACAACC
1 TTTAGCGACGCTTTTTCCACAAACGCCACTAAAGACCACAACC
*
46848671 TTTAGCGACACTTTTTCCACAAACGCCACTAAAGACCACAACC
1 TTTAGCGACGCTTTTTCCACAAACGCCACTAAAGACCACAACC
46848714 TTTAGCG
1 TTTAGCG
46848721 GCAGTTCTAG
Statistics
Matches: 120, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 120 1.00
ACGTcount: A:0.30, C:0.33, G:0.15, T:0.22
Consensus pattern (43 bp):
TTTAGCGACGCTTTTTCCACAAACGCCACTAAAGACCACAACC
Found at i:46848738 original size:43 final size:43
Alignment explanation
Indices: 46848570--46848746 Score: 140
Period size: 43 Copynumber: 4.1 Consensus size: 43
46848560 ACAATCACCG
* * * * * * * *
46848570 CTAAAGACCACGATCTTTAGCGGCGCTTTTTCCACAAACGCCG
1 CTAAAGACCACAACCTTTAGCGACACTTCTACCAAAAACGCCA
** * * * * *
46848613 CTAAAGACCATGACATTTAGCGGCGCTT-TGCCCACAAACGCCA
1 CTAAAGACCACAACCTTTAGCGACACTTCT-ACCAAAAACGCCA
* * *
46848656 CTAAAGACCACAACCTTTAGCGACACTTTTTCCACAAACGCCA
1 CTAAAGACCACAACCTTTAGCGACACTTCTACCAAAAACGCCA
* * * *
46848699 CTAAAGACCACAACCTTTAGCGGCAGTTCTAGCAAAAACGCCG
1 CTAAAGACCACAACCTTTAGCGACACTTCTACCAAAAACGCCA
46848742 CTAAA
1 CTAAA
46848747 AACATAATCT
Statistics
Matches: 114, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
42 1 0.01
43 112 0.98
44 1 0.01
ACGTcount: A:0.32, C:0.32, G:0.16, T:0.20
Consensus pattern (43 bp):
CTAAAGACCACAACCTTTAGCGACACTTCTACCAAAAACGCCA
Found at i:46848746 original size:86 final size:85
Alignment explanation
Indices: 46848539--46848746 Score: 222
Period size: 86 Copynumber: 2.4 Consensus size: 85
46848529 AAAGACCCTG
* * * * * * * * *
46848539 ACATTTAGCGACGCTTTTTCCACAATCACCGCTAAAGACCACGATCTTTAGCGGCGCTTTTTCCA
1 ACATTTAGCGGCGC-TTTGCCAAAAACGCCGCTAAAGACCACAACCTTTAGCGACACTTTTTCCA
* **
46848604 CAAACGCCGCTAAAGACCATG
65 CAAACGCCACTAAAGACCACA
* *
46848625 ACATTTAGCGGCGCTTTGCCCACAAACGCCACTAAAGACCACAACCTTTAGCGACACTTTTTCCA
1 ACATTTAGCGGCGCTTTG-CCAAAAACGCCGCTAAAGACCACAACCTTTAGCGACACTTTTTCCA
46848690 CAAACGCCACTAAAGACCACA
65 CAAACGCCACTAAAGACCACA
*
46848711 ACCTTTAGCGGCAG-TTCTAG-CAAAAACGCCGCTAAA
1 ACATTTAGCGGC-GCTT-T-GCCAAAAACGCCGCTAAA
46848747 AACATAATCT
Statistics
Matches: 103, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
85 3 0.03
86 97 0.94
87 2 0.02
88 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.15, T:0.21
Consensus pattern (85 bp):
ACATTTAGCGGCGCTTTGCCAAAAACGCCGCTAAAGACCACAACCTTTAGCGACACTTTTTCCAC
AAACGCCACTAAAGACCACA
Found at i:46852594 original size:7 final size:7
Alignment explanation
Indices: 46852584--46852643 Score: 75
Period size: 7 Copynumber: 8.6 Consensus size: 7
46852574 CACTAACTCT
46852584 TAACCCC
1 TAACCCC
46852591 TAACCCC
1 TAACCCC
*
46852598 TAACCCT
1 TAACCCC
*
46852605 TAACCTC
1 TAACCCC
*
46852612 TAACCTC
1 TAACCCC
46852619 TAACCCC
1 TAACCCC
*
46852626 AAACCCC
1 TAACCCC
*
46852633 AAACCCC
1 TAACCCC
46852640 TAAC
1 TAAC
46852644 TACTAACCCT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 47 1.00
ACGTcount: A:0.33, C:0.50, G:0.00, T:0.17
Consensus pattern (7 bp):
TAACCCC
Found at i:46852600 original size:21 final size:21
Alignment explanation
Indices: 46852576--46852643 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 21
46852566 CCTTAAATCA
*
46852576 CTAACTCTTAACCCCTAACCC
1 CTAACCCTTAACCCCTAACCC
* *
46852597 CTAACCCTTAACCTCTAACCT
1 CTAACCCTTAACCCCTAACCC
** *
46852618 CTAACCCCAAACCCCAAACCC
1 CTAACCCTTAACCCCTAACCC
46852639 CTAAC
1 CTAAC
46852644 TACTAACCCT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.32, C:0.49, G:0.00, T:0.19
Consensus pattern (21 bp):
CTAACCCTTAACCCCTAACCC
Found at i:46852637 original size:28 final size:28
Alignment explanation
Indices: 46852584--46852659 Score: 82
Period size: 28 Copynumber: 2.7 Consensus size: 28
46852574 CACTAACTCT
* * ** *
46852584 TAACCCCTAACCCCTAACCCTTAACCTC
1 TAACCTCTAACCCCAAACCCCAAACCCC
46852612 TAACCTCTAACCCCAAACCCCAAACCCC
1 TAACCTCTAACCCCAAACCCCAAACCCC
46852640 TAA-CTACTAACCCTCAAACC
1 TAACCT-CTAACCC-CAAACC
46852660 TTATTTAATA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
27 2 0.05
28 33 0.80
29 6 0.15
ACGTcount: A:0.34, C:0.49, G:0.00, T:0.17
Consensus pattern (28 bp):
TAACCTCTAACCCCAAACCCCAAACCCC
Found at i:46852651 original size:14 final size:14
Alignment explanation
Indices: 46852584--46852652 Score: 52
Period size: 14 Copynumber: 4.9 Consensus size: 14
46852574 CACTAACTCT
*
46852584 TAACCCCTAACCCC
1 TAACTCCTAACCCC
*
46852598 TAAC-CCTTAACCTC
1 TAACTCC-TAACCCC
46852612 TAAC-CTCTAACCCC
1 TAACTC-CTAACCCC
* * *
46852626 AAACCCCAAACCCC
1 TAACTCCTAACCCC
*
46852640 TAACTACTAACCC
1 TAACTCCTAACCC
46852653 TCAAACCTTA
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
13 2 0.05
14 40 0.91
15 2 0.05
ACGTcount: A:0.33, C:0.49, G:0.00, T:0.17
Consensus pattern (14 bp):
TAACTCCTAACCCC
Found at i:46852736 original size:13 final size:13
Alignment explanation
Indices: 46852695--46852746 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 13
46852685 ACTAATTAAT
*
46852695 CTAAACCCTAAACC
1 CTAACCCCT-AACC
*
46852709 CTAA-CCCGAATCC
1 CTAACCCCTAA-CC
46852722 CTAACCCCTAACC
1 CTAACCCCTAACC
46852735 CTTAACCCCTAA
1 C-TAACCCCTAA
46852747 ATCACAACCC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
12 2 0.06
13 12 0.36
14 19 0.58
ACGTcount: A:0.35, C:0.46, G:0.02, T:0.17
Consensus pattern (13 bp):
CTAACCCCTAACC
Found at i:46853178 original size:20 final size:19
Alignment explanation
Indices: 46853137--46853180 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
46853127 AATTTTAATT
*
46853137 AATATAAATAAACAAATCA
1 AATATAAATAAACAAATAA
* *
46853156 AATAGTAAATAGACAGATAA
1 AATA-TAAATAAACAAATAA
46853176 AATAT
1 AATAT
46853181 TTTTGCGGCG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.64, C:0.07, G:0.07, T:0.23
Consensus pattern (19 bp):
AATATAAATAAACAAATAA
Found at i:46853255 original size:41 final size:41
Alignment explanation
Indices: 46853198--46853338 Score: 239
Period size: 41 Copynumber: 3.5 Consensus size: 41
46853188 GCGTTTTTTT
**
46853198 AAAAACGCCGCT-AAAGCCTGAGCATTAGCGGCGCTTTTTC
1 AAAAACGCCGCTAAAAGCCTGAGCATTAGCGGCGCTTTCCC
46853238 AAAAACGCCGCTAAAAGCCTGAGCATTAGCGGCGCTTTCCC
1 AAAAACGCCGCTAAAAGCCTGAGCATTAGCGGCGCTTTCCC
*
46853279 AAAAACGCCGCTAAAAGCCTGAGCATTAGCGGTGCTTTCCC
1 AAAAACGCCGCTAAAAGCCTGAGCATTAGCGGCGCTTTCCC
*
46853320 AAGAACGCCGCTAAAAGCC
1 AAAAACGCCGCTAAAAGCC
46853339 CCAAAAGTTC
Statistics
Matches: 96, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
40 12 0.12
41 84 0.88
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.18
Consensus pattern (41 bp):
AAAAACGCCGCTAAAAGCCTGAGCATTAGCGGCGCTTTCCC
Found at i:46856851 original size:43 final size:43
Alignment explanation
Indices: 46856803--46857006 Score: 207
Period size: 43 Copynumber: 4.7 Consensus size: 43
46856793 GCATTTTCTC
* *
46856803 ACAAACACCGCTATAA-AACATAATCTTTAGCGACACTTTTACT
1 ACAAACGCCGCTA-AAGAACATGATCTTTAGCGACACTTTTACT
* *
46856846 ACAAACGCCGCTAAAGAACATGATCTTTAGCGGA-GCTTTTCCT
1 ACAAACGCCGCTAAAGAACATGATCTTTAGC-GACACTTTTACT
* *
46856889 ACAAACGCCGCTAAAGAACATGATCTTTAG-TAGCAGTTTTACT
1 ACAAACGCCGCTAAAGAACATGATCTTTAGCGA-CACTTTTACT
* * * * *
46856932 ACAAATGCTGCTATAGAACATGATCTTTAGCGGCGCTTTTACT
1 ACAAACGCCGCTAAAGAACATGATCTTTAGCGACACTTTTACT
* * ** * *
46856975 AAAAATGCTACTAAAGATCATGTTCTTTAGCG
1 ACAAACGCCGCTAAAGAACATGATCTTTAGCG
46857007 GCGTTTGTAG
Statistics
Matches: 136, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
41 1 0.01
42 2 0.01
43 131 0.96
44 2 0.01
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (43 bp):
ACAAACGCCGCTAAAGAACATGATCTTTAGCGACACTTTTACT
Found at i:46856950 original size:86 final size:86
Alignment explanation
Indices: 46856803--46857004 Score: 237
Period size: 86 Copynumber: 2.3 Consensus size: 86
46856793 GCATTTTCTC
* * *
46856803 ACAAACACCGCTATAA-AACATAATCTTTAGCGACACTTTTACTACAAACGCCGCTAAAGAACAT
1 ACAAACGCCGCTA-AAGAACATGATCTTTAGAGACACTTTTACTACAAACGCCGCTAAAGAACAT
*
46856867 GATCTTTAGCGGAGCTTTTCCT
65 GATCTTTAGCGGAGCTTTTACT
* * * *
46856889 ACAAACGCCGCTAAAGAACATGATCTTTAGTAG-CAGTTTTACTACAAATGCTGCTATAGAACAT
1 ACAAACGCCGCTAAAGAACATGATCTTTAG-AGACACTTTTACTACAAACGCCGCTAAAGAACAT
*
46856953 GATCTTTAGCGGCGCTTTTACT
65 GATCTTTAGCGGAGCTTTTACT
* * ** * *
46856975 AAAAATGCTACTAAAGATCATGTTCTTTAG
1 ACAAACGCCGCTAAAGAACATGATCTTTAG
46857005 CGGCGTTTGT
Statistics
Matches: 99, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
85 2 0.02
86 96 0.97
87 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (86 bp):
ACAAACGCCGCTAAAGAACATGATCTTTAGAGACACTTTTACTACAAACGCCGCTAAAGAACATG
ATCTTTAGCGGAGCTTTTACT
Found at i:46857007 original size:43 final size:42
Alignment explanation
Indices: 46856819--46857082 Score: 194
Period size: 43 Copynumber: 6.1 Consensus size: 42
46856809 ACCGCTATAA
* * * * *
46856819 AACATAATCTTTAGCGACACTTTTACTACAAACGCCGCTAAAG
1 AACATGATCTTTAGCGGCGCTTTTACTA-AAAAGCTGCTAAAG
* * * *
46856862 AACATGATCTTTAGCGGAGCTTTTCCTACAAACGCCGCTAAAG
1 AACATGATCTTTAGCGGCGCTTTTACTA-AAAAGCTGCTAAAG
** * *
46856905 AACATGATCTTTAGTAGCAG-TTTTACTACAAATGCTGCTATAG
1 AACATGATCTTTAGCGGC-GCTTTTACTA-AAAAGCTGCTAAAG
*
46856948 AACATGATCTTTAGCGGCGCTTTTACTAAAAATGCTACTAAAG
1 AACATGATCTTTAGCGGCGCTTTTACTAAAAA-GCTGCTAAAG
* * ** *
46856991 ATCATGTTCTTTAGCGGCG-TTTGTAGGAAAAGCACCT-CTAAAG
1 AACATGATCTTTAGCGGCGCTTT-TACTAAAA--AGCTGCTAAAG
* * * *
46857034 ATCATGTTCTTTAGCGGCGTTTTTA-TAAGAAGCGTCGCTAAAG
1 AACATGATCTTTAGCGGCGCTTTTACTAAAAAGC-T-GCTAAAG
*
46857077 ATCATG
1 AACATG
46857083 TTCTATAGTA
Statistics
Matches: 186, Mismatches: 25, Indels: 20
0.81 0.11 0.09
Matches are distributed among these distances:
40 2 0.01
41 1 0.01
42 10 0.05
43 166 0.89
44 6 0.03
45 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.30
Consensus pattern (42 bp):
AACATGATCTTTAGCGGCGCTTTTACTAAAAAGCTGCTAAAG
Found at i:46869117 original size:151 final size:151
Alignment explanation
Indices: 46868843--46869119 Score: 419
Period size: 151 Copynumber: 1.8 Consensus size: 151
46868833 CTATTCACTT
* * *
46868843 TCACGGGTCTGCTCACACAAGCTGTCAGTCTTTTGTTACTACTCAGTGTTGCTCACACAAGCTAT
1 TCACGGGTCTGCTCACACAAGCTGTCAGTCATTCGTTACTACTCAGTGCTGCTCACACAAGCTAT
* * **
46868908 TAGGTATTTGCAACATATGCCAGCATACCCAGCCACTGATAGAACTTAAGACCAGCACCCGAGTT
66 CAAGTATCCGCAACATATGCCAGCATACCCAGCCACTGATAGAACTTAAGACCAGCACCCGAGTT
46868973 CACATTAATCATAGTTTCGCA
131 CACATTAATCATAGTTTCGCA
* *
46868994 TCACGGGTCTGCTCACACAAGCTGTCAGTCATTCGTTACTACTTAGTGCTGCTCACACAAGCTGT
1 TCACGGGTCTGCTCACACAAGCTGTCAGTCATTCGTTACTACTCAGTGCTGCTCACACAAGCTAT
*** * * *
46869059 CAAGTATCCGCAACATATGTTGGTATACCCAGCCACTGGTAGAACTTATGACCAGCACCCG
66 CAAGTATCCGCAACATATGCCAGCATACCCAGCCACTGATAGAACTTAAGACCAGCACCCG
46869120 GATCCACTTT
Statistics
Matches: 111, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
151 111 1.00
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (151 bp):
TCACGGGTCTGCTCACACAAGCTGTCAGTCATTCGTTACTACTCAGTGCTGCTCACACAAGCTAT
CAAGTATCCGCAACATATGCCAGCATACCCAGCCACTGATAGAACTTAAGACCAGCACCCGAGTT
CACATTAATCATAGTTTCGCA
Found at i:46875355 original size:20 final size:20
Alignment explanation
Indices: 46875332--46875369 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
46875322 AGCTCAACGT
46875332 GCTCATTCTT-AGCTCATTCA
1 GCTCA-TCTTAAGCTCATTCA
46875352 GCTCATCTTAAGCTCATT
1 GCTCATCTTAAGCTCATT
46875370 TTAGTTTGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.21, C:0.29, G:0.11, T:0.39
Consensus pattern (20 bp):
GCTCATCTTAAGCTCATTCA
Found at i:46876747 original size:12 final size:13
Alignment explanation
Indices: 46876718--46876747 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
46876708 GTGAGTTTGT
46876718 AAAAAAAAATTCG
1 AAAAAAAAATTCG
*
46876731 AAAAAAAAATTCT
1 AAAAAAAAATTCG
46876744 AAAA
1 AAAA
46876748 TTCAAAGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.73, C:0.07, G:0.03, T:0.17
Consensus pattern (13 bp):
AAAAAAAAATTCG
Found at i:46886581 original size:7 final size:8
Alignment explanation
Indices: 46886564--46886588 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
46886554 CATTATATTT
46886564 AAAAATAA
1 AAAAATAA
46886572 AAAAATAA
1 AAAAATAA
46886580 AAAAATAA
1 AAAAATAA
46886588 A
1 A
46886589 TCATATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAATAA
Found at i:46894280 original size:25 final size:25
Alignment explanation
Indices: 46894205--46894274 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
46894195 TCTTGTACAT
46894205 GTATGCTCACACGAGCTGTGAATCG
1 GTATGCTCACACGAGCTGTGAATCG
* * *
46894230 ATATGCTCACAGGAGCTATGAATCG
1 GTATGCTCACACGAGCTGTGAATCG
*
46894255 GTATGCTTACACGAGCTGTG
1 GTATGCTCACACGAGCTGTG
46894275 GGTCGGAACG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (25 bp):
GTATGCTCACACGAGCTGTGAATCG
Found at i:46903563 original size:27 final size:28
Alignment explanation
Indices: 46903496--46903564 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
46903486 GTTGTGCTCT
46903496 CAGATGTGTTTTGGCAAACAAAAGTTCA
1 CAGATGTGTTTTGGCAAACAAAAGTTCA
* **
46903524 CAGATGTGTTTTGGCAGACTCAA-TTCGA
1 CAGATGTGTTTTGGCAAACAAAAGTTC-A
46903552 -AGATGTGTTTTGG
1 CAGATGTGTTTTGG
46903565 TGAACCAAGT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 16 0.43
28 21 0.57
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (28 bp):
CAGATGTGTTTTGGCAAACAAAAGTTCA
Found at i:46914732 original size:22 final size:22
Alignment explanation
Indices: 46914689--46914741 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
46914679 TTTACAAATG
* *
46914689 AATATTTATATTATTTTAATTT
1 AATATTTATATAATGTTAATTT
46914711 AATATTTA-ATAATGTTATATTT
1 AATATTTATATAATGTTA-ATTT
**
46914733 TTTATTTAT
1 AATATTTAT
46914742 TAAAATTATA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
21 7 0.28
22 18 0.72
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (22 bp):
AATATTTATATAATGTTAATTT
Found at i:46915424 original size:43 final size:42
Alignment explanation
Indices: 46915377--46915471 Score: 102
Period size: 43 Copynumber: 2.2 Consensus size: 42
46915367 AATATAAAAT
* * * *
46915377 AATTATATTAAAAATGTTATTAAATT-ATATTTTATTTTTATTA
1 AATTATATTAAAAA--TAATTAAATTAAAATATGATTTTTATTA
* *
46915420 AATTATATTTAATAATAATTATATTAAAATATGATTTTTATTA
1 AATTATA-TTAAAAATAATTAAATTAAAATATGATTTTTATTA
46915463 AATTATATT
1 AATTATATT
46915472 TAATAATATT
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
42 10 0.23
43 28 0.64
44 6 0.14
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (42 bp):
AATTATATTAAAAATAATTAAATTAAAATATGATTTTTATTA
Found at i:46915428 original size:16 final size:16
Alignment explanation
Indices: 46915409--46915472 Score: 50
Period size: 17 Copynumber: 4.3 Consensus size: 16
46915399 AATTATATTT
46915409 TATTTTTATTAAATTA
1 TATTTTTATTAAATTA
*
46915425 TA--TTTAAT-AA-TA
1 TATTTTTATTAAATTA
* *
46915437 -A-TTATATTAAAATA
1 TATTTTTATTAAATTA
46915451 TGATTTTTATTAAATTA
1 T-ATTTTTATTAAATTA
46915468 TATTT
1 TATTT
46915473 AATAATATTC
Statistics
Matches: 37, Mismatches: 5, Indels: 12
0.69 0.09 0.22
Matches are distributed among these distances:
11 1 0.03
12 6 0.16
13 4 0.11
14 7 0.19
16 7 0.19
17 12 0.32
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (16 bp):
TATTTTTATTAAATTA
Found at i:46915492 original size:43 final size:43
Alignment explanation
Indices: 46915410--46915492 Score: 132
Period size: 43 Copynumber: 1.9 Consensus size: 43
46915400 ATTATATTTT
*
46915410 ATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATG
1 ATTTTTATTAAATTATATTTAATAATAATTATATCAAAATATG
*
46915453 ATTTTTATTAAATTATATTTAATAAT-ATTCCTATCAAAAT
1 ATTTTTATTAAATTATATTTAATAATAATT-ATATCAAAAT
46915493 TTAATAATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
42 3 0.08
43 34 0.92
ACGTcount: A:0.45, C:0.04, G:0.01, T:0.51
Consensus pattern (43 bp):
ATTTTTATTAAATTATATTTAATAATAATTATATCAAAATATG
Found at i:46917503 original size:22 final size:22
Alignment explanation
Indices: 46917472--46917580 Score: 64
Period size: 22 Copynumber: 4.7 Consensus size: 22
46917462 TATATAATGG
*
46917472 ATTTTAAAAAATAATGTATGATA
1 ATTTT-AAAAATAATGTATAATA
46917495 ATTTT-AAAAT-ATGTTAGTAATA
1 ATTTTAAAAATAATG-TA-TAATA
*
46917517 A-TTTAAAAATAATAGTATATTATT
1 ATTTTAAAAATAAT-GTATA--ATA
*
46917541 ATTTTTAAAATCATAT-TAATAATA
1 ATTTTAAAAAT-A-ATGT-ATAATA
* *
46917565 AGTTTAAAAACAATGT
1 ATTTTAAAAATAATGT
46917581 CAAGCTAAAT
Statistics
Matches: 67, Mismatches: 7, Indels: 24
0.68 0.07 0.24
Matches are distributed among these distances:
20 3 0.04
21 10 0.15
22 14 0.21
23 11 0.16
24 14 0.21
25 9 0.13
26 4 0.06
27 2 0.03
ACGTcount: A:0.50, C:0.02, G:0.06, T:0.42
Consensus pattern (22 bp):
ATTTTAAAAATAATGTATAATA
Found at i:46931210 original size:145 final size:145
Alignment explanation
Indices: 46930972--46931264 Score: 568
Period size: 145 Copynumber: 2.0 Consensus size: 145
46930962 GGATATCGAG
46930972 TACTTTGTGGGTGATTATGTATTCCTTAAGATGTCTCCGTGGAATAAGGTTCTGCGGTTCGGATG
1 TACTTTGTGGGTGATTATGTATTCCTTAAGATGTCTCCGTGGAATAAGGTTCTGCGGTTCGGATG
*
46931037 TAAGGGCAAGTTGAGCCCTAGTTTCATTGGGTTGTATCAGATTTTGAAGAGTGTGGGATCGGTCG
66 TAAGGGCAAGTTGAGCCCTAGTTTCATTGGGCTGTATCAGATTTTGAAGAGTGTGGGATCGGTCG
*
46931102 CTTATTAGTTAAAGC
131 CTTATCAGTTAAAGC
46931117 TACTTTGTGGGTGATTATGTATTCCTTAAGATGTCTCCGTGGAATAAGGTTCTGCGGTTCGGATG
1 TACTTTGTGGGTGATTATGTATTCCTTAAGATGTCTCCGTGGAATAAGGTTCTGCGGTTCGGATG
46931182 TAAGGGCAAGTTGAGCCCTAGTTTCATTGGGCTGTATCAGATTTTGAAGAGTGTGGGATCGGTCG
66 TAAGGGCAAGTTGAGCCCTAGTTTCATTGGGCTGTATCAGATTTTGAAGAGTGTGGGATCGGTCG
46931247 CTTATCAGTTAAAGC
131 CTTATCAGTTAAAGC
46931262 TAC
1 TAC
46931265 CTCTAGAGTT
Statistics
Matches: 146, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
145 146 1.00
ACGTcount: A:0.22, C:0.14, G:0.29, T:0.35
Consensus pattern (145 bp):
TACTTTGTGGGTGATTATGTATTCCTTAAGATGTCTCCGTGGAATAAGGTTCTGCGGTTCGGATG
TAAGGGCAAGTTGAGCCCTAGTTTCATTGGGCTGTATCAGATTTTGAAGAGTGTGGGATCGGTCG
CTTATCAGTTAAAGC
Found at i:46931898 original size:103 final size:103
Alignment explanation
Indices: 46931714--46931921 Score: 407
Period size: 103 Copynumber: 2.0 Consensus size: 103
46931704 ATTCTGTTAT
46931714 TTTTTATCCTAGCCTTATCCCTATTAGGTGGGCTTATGTTATATTTTCAGTGAACTCATATCAGA
1 TTTTTATCCTAGCCTTATCCCTATTAGGTGGGCTTATGTTATATTTTCAGTGAACTCATATCAGA
46931779 ATGAGCCTGCTAGTTTAGGTGGTAAGGTGTTAGCTTGC
66 ATGAGCCTGCTAGTTTAGGTGGTAAGGTGTTAGCTTGC
46931817 TTTTTATCCTAGCCTTATCCCTATTAGGTGGGCTTATGTTATATTTTCAGTGAACTCATATCAGA
1 TTTTTATCCTAGCCTTATCCCTATTAGGTGGGCTTATGTTATATTTTCAGTGAACTCATATCAGA
*
46931882 ATGAGCCTGCTGGTTTAGGTGGTAAGGTGTTAGCTTGC
66 ATGAGCCTGCTAGTTTAGGTGGTAAGGTGTTAGCTTGC
46931920 TT
1 TT
46931922 CTGTGAGTGT
Statistics
Matches: 104, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
103 104 1.00
ACGTcount: A:0.21, C:0.16, G:0.23, T:0.40
Consensus pattern (103 bp):
TTTTTATCCTAGCCTTATCCCTATTAGGTGGGCTTATGTTATATTTTCAGTGAACTCATATCAGA
ATGAGCCTGCTAGTTTAGGTGGTAAGGTGTTAGCTTGC
Found at i:46932832 original size:17 final size:18
Alignment explanation
Indices: 46932810--46932848 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
46932800 CATGTACGCC
* *
46932810 GTGGG-CCATACGGGTGT
1 GTGGGCCCACACGGGTAT
46932827 GTGGGCCCACACGGGTAT
1 GTGGGCCCACACGGGTAT
46932845 GTGG
1 GTGG
46932849 ACTCAAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.13, C:0.21, G:0.46, T:0.21
Consensus pattern (18 bp):
GTGGGCCCACACGGGTAT
Found at i:46936132 original size:25 final size:25
Alignment explanation
Indices: 46936104--46936154 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
46936094 ATGGATGTGG
46936104 AAAGGTAATGAAATAGTAAGTTCAT
1 AAAGGTAATGAAATAGTAAGTTCAT
46936129 AAAGGTAATGAAATAGTAAGTTCAT
1 AAAGGTAATGAAATAGTAAGTTCAT
46936154 A
1 A
46936155 CTTGAAGTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.49, C:0.04, G:0.20, T:0.27
Consensus pattern (25 bp):
AAAGGTAATGAAATAGTAAGTTCAT
Found at i:46936248 original size:20 final size:19
Alignment explanation
Indices: 46936225--46936266 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
46936215 TAAAGAAAGT
46936225 AAATAT-AATGGAAAGTAATG
1 AAATATAAAT-GAAAGTAA-G
*
46936245 AAATGTAAATGAAAGTAAG
1 AAATATAAATGAAAGTAAG
46936264 AAA
1 AAA
46936267 ATTTGAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 13 0.65
21 3 0.15
ACGTcount: A:0.60, C:0.00, G:0.19, T:0.21
Consensus pattern (19 bp):
AAATATAAATGAAAGTAAG
Found at i:46940611 original size:35 final size:35
Alignment explanation
Indices: 46940572--46940722 Score: 162
Period size: 35 Copynumber: 4.3 Consensus size: 35
46940562 ATCCAACACA
* * *
46940572 AAACACACCAGATG-TCACAAGAGTCAATCCATCCA
1 AAACACACCA-ATGCTCATAAGAGTCAATCCCTCCG
* * *
46940607 AAACAAACCAATGCTCGTAAGAG-CTAATCCCTCTG
1 AAACACACCAATGCTCATAAGAGTC-AATCCCTCCG
* * * *
46940642 AAACACACCAGTGCTCATAAAAGTTAATCCCTTCG
1 AAACACACCAATGCTCATAAGAGTCAATCCCTCCG
* *
46940677 AAACACACCAATGCTCGTAAGAGTTAATCCCTCCG
1 AAACACACCAATGCTCATAAGAGTCAATCCCTCCG
46940712 AAACACACCAA
1 AAACACACCAA
46940723 AATAGATAGT
Statistics
Matches: 96, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
34 4 0.04
35 92 0.96
ACGTcount: A:0.40, C:0.30, G:0.12, T:0.18
Consensus pattern (35 bp):
AAACACACCAATGCTCATAAGAGTCAATCCCTCCG
Found at i:46940649 original size:70 final size:70
Alignment explanation
Indices: 46940572--46940721 Score: 203
Period size: 70 Copynumber: 2.1 Consensus size: 70
46940562 ATCCAACACA
*
46940572 AAACACACCAGATG-TCACAAGAGTCAATCCATCCAAAACAAACCAATGCTCGTAAGAGCTAATC
1 AAACACACCAG-TGCTCACAAAAGTCAATCCATCCAAAACAAACCAATGCTCGTAAGAGCTAATC
*
46940636 CCTCTG
65 CCTCCG
* * * * * * *
46940642 AAACACACCAGTGCTCATAAAAGTTAATCCCTTCGAAACACACCAATGCTCGTAAGAGTTAATCC
1 AAACACACCAGTGCTCACAAAAGTCAATCCATCCAAAACAAACCAATGCTCGTAAGAGCTAATCC
46940707 CTCCG
66 CTCCG
46940712 AAACACACCA
1 AAACACACCA
46940722 AAATAGATAG
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
69 2 0.03
70 68 0.97
ACGTcount: A:0.39, C:0.31, G:0.12, T:0.18
Consensus pattern (70 bp):
AAACACACCAGTGCTCACAAAAGTCAATCCATCCAAAACAAACCAATGCTCGTAAGAGCTAATCC
CTCCG
Found at i:46947526 original size:15 final size:15
Alignment explanation
Indices: 46947506--46947538 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
46947496 TCAATTCTTA
46947506 AAATTA-TAAAAATAT
1 AAATTATTAAAAAT-T
46947521 AAATTATTAAAAATT
1 AAATTATTAAAAATT
46947536 AAA
1 AAA
46947539 ATTTTATTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AAATTATTAAAAATT
Found at i:46947540 original size:16 final size:15
Alignment explanation
Indices: 46947503--46947541 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
46947493 GATTCAATTC
46947503 TTAAAATTATAAAAA
1 TTAAAATTATAAAAA
46947518 -TATAAATTATTAAAAA
1 TTA-AAATTA-TAAAAA
46947534 TTAAAATT
1 TTAAAATT
46947542 TTATTCTACC
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 2 0.10
15 6 0.29
16 11 0.52
17 2 0.10
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
TTAAAATTATAAAAA
Found at i:46955583 original size:16 final size:16
Alignment explanation
Indices: 46955533--46955584 Score: 52
Period size: 16 Copynumber: 3.0 Consensus size: 16
46955523 GAGTGAGAAG
46955533 TAAAAGTTTAGAGGGAAAA
1 TAAAAGTTT-GAGGG--AA
46955552 TAAAAAGTTTTG-GGGAA
1 T-AAAAG-TTTGAGGGAA
46955569 TAAAAGTTTGAGGGAA
1 TAAAAGTTTGAGGGAA
46955585 AATAAATAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
15 4 0.13
16 10 0.33
17 3 0.10
19 4 0.13
20 6 0.20
21 3 0.10
ACGTcount: A:0.46, C:0.00, G:0.29, T:0.25
Consensus pattern (16 bp):
TAAAAGTTTGAGGGAA
Found at i:46955945 original size:18 final size:18
Alignment explanation
Indices: 46955902--46955948 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
46955892 ACCCAATCTA
* *
46955902 AACCCAAGTATTCAACCC
1 AACCCAATTATCCAACCC
46955920 AACCCAATTATCCAACCC
1 AACCCAATTATCCAACCC
46955938 AACCCAATTAT
1 AACCCAATTAT
46955949 AAAAATTACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.40, C:0.38, G:0.02, T:0.19
Consensus pattern (18 bp):
AACCCAATTATCCAACCC
Found at i:46956065 original size:9 final size:9
Alignment explanation
Indices: 46956048--46956114 Score: 80
Period size: 9 Copynumber: 7.4 Consensus size: 9
46956038 GTAGTGATTC
*
46956048 AATTTGGTT
1 AATTCGGTT
46956057 AATTCGGTT
1 AATTCGGTT
*
46956066 AATTCGGGT
1 AATTCGGTT
*
46956075 AATTCGGGT
1 AATTCGGTT
*
46956084 AATTCCGTT
1 AATTCGGTT
46956093 AATTCGGTT
1 AATTCGGTT
* *
46956102 AGTTTGGTT
1 AATTCGGTT
46956111 AATT
1 AATT
46956115 TTTAACCAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.22, C:0.09, G:0.24, T:0.45
Consensus pattern (9 bp):
AATTCGGTT
Found at i:46956113 original size:27 final size:27
Alignment explanation
Indices: 46956048--46956114 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 27
46956038 GTAGTGATTC
*
46956048 AATTTGGTTAATTCGGTTAATTCGGGT
1 AATTTGGTTAATTCCGTTAATTCGGGT
* * *
46956075 AATTCGGGTAATTCCGTTAATTCGGTT
1 AATTTGGTTAATTCCGTTAATTCGGGT
*
46956102 AGTTTGGTTAATT
1 AATTTGGTTAATT
46956115 TTTAACCAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.22, C:0.09, G:0.24, T:0.45
Consensus pattern (27 bp):
AATTTGGTTAATTCCGTTAATTCGGGT
Found at i:46957505 original size:25 final size:24
Alignment explanation
Indices: 46957468--46957519 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
46957458 TTGAATATTA
** *
46957468 TTTAATTTTTTTTCATTTATGTAAT
1 TTTAATTAATTTTCATTT-TATAAT
*
46957493 TTTAATTAATTTTTATTTTATAAT
1 TTTAATTAATTTTCATTTTATAAT
46957517 TTT
1 TTT
46957520 TTATAACAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (24 bp):
TTTAATTAATTTTCATTTTATAAT
Found at i:46959071 original size:18 final size:18
Alignment explanation
Indices: 46959048--46959086 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
46959038 ATGCCAGGTG
*
46959048 TGTATCCTAGCCCTTATA
1 TGTATCCTAACCCTTATA
46959066 TGTATCCTAACCCTTATA
1 TGTATCCTAACCCTTATA
46959084 TGT
1 TGT
46959087 TTCTTTTTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.26, G:0.10, T:0.41
Consensus pattern (18 bp):
TGTATCCTAACCCTTATA
Found at i:46962890 original size:125 final size:126
Alignment explanation
Indices: 46962609--46963117 Score: 618
Period size: 125 Copynumber: 4.1 Consensus size: 126
46962599 GGAACTGCTA
* * * * *
46962609 TAGAAAAAGAGCATCCACGT-AGGAGGTTTTTTCAGTAATTTTGCTGACAGTGCATACTGTTTGA
1 TAGAAAAAGAGCGTACACGTGA-GAGCTTTTTTCAATAATTTTGCTGACAGTGCATACTGCTTGA
** * *
46962673 AGCGTTTTTGACACTATTTTTTCAGAACTGTCTTCTCAAAATTATTTTTTCAGGAACTATTG
65 AGCGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAGAAACTACTG
* * * *
46962735 TAGAAAAAGAGCGTTCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTG-ATACTGCTTGAA
1 TAGAAAAAGAGCGTACACGTGAGAGCTTTTTTCAATAATTTTGCTGACAGTGCATACTGCTTGAA
* * * * *
46962799 GTGTTTTTGACATTATTTTTTTAGAGCCATCTTCTC-AAATTATTTTTTCAGGAACTACTG
66 GCGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAGAAACTACTG
* * * * *
46962859 TA-AAAAATGTGCGTCCACGTGAGAGTTTTTTTCAATAATTTTACTGACACTGCATACTGCTTGA
1 TAGAAAAA-GAGCGTACACGTGAGAGCTTTTTTCAATAATTTTGCTGACAGTGCATACTGCTTGA
* * * * *
46962923 AGCGTTTCTGACATTATTTTTTCATAA-CAGTCTTCTCAAAATTATTTTTTTAGAAACTACAG
65 AGCGTTTTTGACACTATTTTTTCAGAACCA-TCTTCTCAAAATTATTTTTTCAGAAACTACTG
* * *
46962985 TAGAAAAAGAGCATACACGTGAGAGCTTTTTT-AATACTTTTGCTGACAGTGCAT-CTTGCTTAA
1 TAGAAAAAGAGCGTACACGTGAGAGCTTTTTTCAATAATTTTGCTGACAGTGCATAC-TGCTTGA
* * * *
46963048 AGCGTTTTTGTCACTATTTTTTCAGAACCGTCTTCTCAAAATTAATTTTTCAGAAACTACTA
65 AGCGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAGAAACTACTG
46963110 TAGAAAAA
1 TAGAAAAA
46963118 AAAAACAAAA
Statistics
Matches: 329, Mismatches: 46, Indels: 17
0.84 0.12 0.04
Matches are distributed among these distances:
123 5 0.02
124 64 0.19
125 165 0.50
126 90 0.27
127 5 0.02
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (126 bp):
TAGAAAAAGAGCGTACACGTGAGAGCTTTTTTCAATAATTTTGCTGACAGTGCATACTGCTTGAA
GCGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAGAAACTACTG
Found at i:46963248 original size:34 final size:35
Alignment explanation
Indices: 46963199--46963334 Score: 127
Period size: 34 Copynumber: 3.9 Consensus size: 35
46963189 AACCTAAACA
* *
46963199 TAATTTTTTTAAAAAAAAT-TAAACCTTAATTTAGT
1 TAATTTTCTT-AAAAAAATCTAAACCTTAATTTAAT
* *
46963234 TAATTTTCTT-AAAAACTCTAAACCCTAATTTAAT
1 TAATTTTCTTAAAAAAATCTAAACCTTAATTTAAT
* * ** *
46963268 TAATTTACTT-AAGAACCCTAAACC-TAATTGAAT
1 TAATTTTCTTAAAAAAATCTAAACCTTAATTTAAT
* *
46963301 TAATTTTTTTAAAAAAATTCTAAACCTTGATTTA
1 TAATTTTCTTAAAAAAA-TCTAAACCTTAATTTA
46963335 TTTTTTAAAA
Statistics
Matches: 82, Mismatches: 15, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
33 22 0.27
34 39 0.48
35 16 0.20
36 5 0.06
ACGTcount: A:0.43, C:0.12, G:0.03, T:0.42
Consensus pattern (35 bp):
TAATTTTCTTAAAAAAATCTAAACCTTAATTTAAT
Found at i:46964471 original size:15 final size:15
Alignment explanation
Indices: 46964451--46964498 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
46964441 GCGTTAGATC
*
46964451 TTAAATTATATATAT
1 TTAAATTATATAAAT
*
46964466 TTAAATTTTATAAAT
1 TTAAATTATATAAAT
*
46964481 ATAAA-TAT-TAAAT
1 TTAAATTATATAAAT
46964494 TTAAA
1 TTAAA
46964499 CATAATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
13 9 0.32
14 2 0.07
15 17 0.61
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TTAAATTATATAAAT
Found at i:46964488 original size:23 final size:23
Alignment explanation
Indices: 46964452--46964495 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
46964442 CGTTAGATCT
*
46964452 TAAATTATATATATTTAAATTTTA
1 TAAATTATAAATA-TTAAATTTTA
46964476 TAAA-TATAAATATTAAATTT
1 TAAATTATAAATATTAAATTT
46964496 AAACATAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
23 7 0.37
24 4 0.21
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
TAAATTATAAATATTAAATTTTA
Found at i:46967588 original size:17 final size:17
Alignment explanation
Indices: 46967561--46967593 Score: 50
Period size: 16 Copynumber: 1.9 Consensus size: 17
46967551 AAAGTTTAGG
46967561 GGGGAAATAAAAAGTTTT
1 GGGGAAAT-AAAAGTTTT
46967579 GGGG-AATAAAAGTTT
1 GGGGAAATAAAAGTTT
46967594 AAGGGAAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 8 0.53
17 3 0.20
18 4 0.27
ACGTcount: A:0.42, C:0.00, G:0.30, T:0.27
Consensus pattern (17 bp):
GGGGAAATAAAAGTTTT
Found at i:46967720 original size:31 final size:30
Alignment explanation
Indices: 46967685--46967744 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
46967675 GGAGGTGGGA
*
46967685 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGG-AGGGAATAAAAATTTTAGGGGAAAAG
** *
46967716 TGGGAGGGGGTAAAAATTTTGGGGGAAAA
1 TGGGAGGGAATAAAAATTTTAGGGGAAAA
46967745 TAAAAGGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.38, C:0.00, G:0.42, T:0.20
Consensus pattern (30 bp):
TGGGAGGGAATAAAAATTTTAGGGGAAAAG
Found at i:46969998 original size:11 final size:10
Alignment explanation
Indices: 46969982--46970015 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
46969972 AAAAGAAGAA
46969982 AAAGAAAATGG
1 AAAGAAAA-GG
*
46969993 AAAGAAAAAG
1 AAAGAAAAGG
46970003 AAAGAAAAGG
1 AAAGAAAAGG
46970013 AAA
1 AAA
46970016 ATAGGAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 13 0.62
11 8 0.38
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.03
Consensus pattern (10 bp):
AAAGAAAAGG
Found at i:46969998 original size:20 final size:20
Alignment explanation
Indices: 46969973--46970015 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
46969963 AAAGGAAGCA
*
46969973 AAAGAAGAA-AAAGAAAATGG
1 AAAGAAAAAGAAAGAAAA-GG
46969993 AAAGAAAAAGAAAGAAAAGG
1 AAAGAAAAAGAAAGAAAAGG
46970013 AAA
1 AAA
46970016 ATAGGAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.02
Consensus pattern (20 bp):
AAAGAAAAAGAAAGAAAAGG
Found at i:46970015 original size:27 final size:27
Alignment explanation
Indices: 46969972--46970023 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
46969962 GAAAGGAAGC
46969972 AAAAGAAGAAAAAGAAAAT-GGAAAGA
1 AAAAGAAGAAAAAGAAAATAGGAAAGA
*
46969998 AAAAGAAAGAAAAGGAAAATAGGAAA
1 AAAAG-AAGAAAAAGAAAATAGGAAA
46970024 AAGGAAGAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 5 0.22
27 13 0.57
28 5 0.22
ACGTcount: A:0.73, C:0.00, G:0.23, T:0.04
Consensus pattern (27 bp):
AAAAGAAGAAAAAGAAAATAGGAAAGA
Found at i:46971694 original size:3 final size:3
Alignment explanation
Indices: 46971686--46971716 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
46971676 GGACTTTAAG
46971686 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
46971717 AGAGCTGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:46995982 original size:90 final size:90
Alignment explanation
Indices: 46995722--46995990 Score: 292
Period size: 90 Copynumber: 3.0 Consensus size: 90
46995712 TTTAATAATA
* * * *
46995722 TGCAACTCTAGTGGTTCATCCA-CAAATATTCTGGCAGCTCTTATCTGCAAATATGTTGTGCATT
1 TGCAACACTCGTGGTTCATCCACCCATTA-TCTGGCAGCTCTTATCTGCAAATATGTTGTGCATT
* ***
46995786 CACAACCTTCTGGCAGTATATTAACT
65 CACAACCTTCTGACAACGTATTAACT
* ** * **
46995812 TGCAACACTCGTGGTTCATCCACCCACTT-TTTGGCAGCTCTTAGATGCAAAAATGTTGTTTATT
1 TGCAACACTCGTGGTTCATCCACCCA-TTATCTGGCAGCTCTTATCTGCAAATATGTTGTGCATT
* *
46995876 CACAACCATCTAACAACGTATTAACT
65 CACAACCTTCTGACAACGTATTAACT
* * * * * *
46995902 TGCAACATTGGTGGTTCATCCACCCATTATCTGGAAACTCTTATCTGCATATATGTTATGCATTC
1 TGCAACACTCGTGGTTCATCCACCCATTATCTGGCAGCTCTTATCTGCAAATATGTTGTGCATTC
46995967 ACAACCTT-TCGACAACGTATTAAC
66 ACAACCTTCT-GACAACGTATTAAC
46995991 CTATAATTTT
Statistics
Matches: 145, Mismatches: 30, Indels: 8
0.79 0.16 0.04
Matches are distributed among these distances:
89 3 0.02
90 139 0.96
91 2 0.01
92 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (90 bp):
TGCAACACTCGTGGTTCATCCACCCATTATCTGGCAGCTCTTATCTGCAAATATGTTGTGCATTC
ACAACCTTCTGACAACGTATTAACT
Found at i:46996788 original size:22 final size:22
Alignment explanation
Indices: 46996760--46996805 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
46996750 CTAGGTTGGG
46996760 GAGGTTACACCATCTTTTAGGC
1 GAGGTTACACCATCTTTTAGGC
*
46996782 GAGGTTACACCGTCTTTTAGGC
1 GAGGTTACACCATCTTTTAGGC
46996804 GA
1 GA
46996806 AACTTGTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (22 bp):
GAGGTTACACCATCTTTTAGGC
Found at i:46997363 original size:20 final size:19
Alignment explanation
Indices: 46997334--46997391 Score: 73
Period size: 19 Copynumber: 3.0 Consensus size: 19
46997324 TTCAAACAGG
*
46997334 ATTTTCAAAAATTCAAAAT
1 ATTTTTAAAAATTCAAAAT
46997353 AATTTTT-AAAATTCAAAAT
1 -ATTTTTAAAAATTCAAAAT
*
46997372 ATTTATAAAAATTCCAAAAT
1 ATTTTTAAAAATT-CAAAAT
46997392 TTATATTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.15
19 18 0.53
20 11 0.32
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (19 bp):
ATTTTTAAAAATTCAAAAT
Found at i:46999624 original size:34 final size:34
Alignment explanation
Indices: 46999586--46999701 Score: 108
Period size: 34 Copynumber: 3.4 Consensus size: 34
46999576 CGCGCCTAGG
* * *
46999586 CTAGTTGGATAATCGACGATGGTTGTGCCCAGCA
1 CTAGTCGGATAATCGACGATGGTTATGCCCAACA
** * * *
46999620 CTAGTCAAATGAGTCGACGAT-GTTTTGCACCCAACG
1 CTAGTCGGAT-AATCGACGATGGTTATG--CCCAACA
*
46999656 CTAGTCGGATAACCGACGATGGTTATGCCCAACA
1 CTAGTCGGATAATCGACGATGGTTATGCCCAACA
*
46999690 CTAGTCAGATAA
1 CTAGTCGGATAA
46999702 ACTAATAGAA
Statistics
Matches: 64, Mismatches: 14, Indels: 8
0.74 0.16 0.09
Matches are distributed among these distances:
34 29 0.45
35 17 0.27
36 18 0.28
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.24
Consensus pattern (34 bp):
CTAGTCGGATAATCGACGATGGTTATGCCCAACA
Found at i:47001629 original size:27 final size:27
Alignment explanation
Indices: 47001591--47001663 Score: 112
Period size: 26 Copynumber: 2.7 Consensus size: 27
47001581 GAGAAGTCAA
47001591 TAAATGACCGAAATACCCTCATAAGGT
1 TAAATGACCGAAATACCCTCATAAGGT
*
47001618 TAAATGACCGAAATACCC-CATATGGT
1 TAAATGACCGAAATACCCTCATAAGGT
* *
47001644 AAAATGACTGAAATACCCTC
1 TAAATGACCGAAATACCCTC
47001664 GTTGGGTAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
26 23 0.55
27 19 0.45
ACGTcount: A:0.41, C:0.23, G:0.14, T:0.22
Consensus pattern (27 bp):
TAAATGACCGAAATACCCTCATAAGGT
Found at i:47001648 original size:26 final size:27
Alignment explanation
Indices: 47001592--47001678 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
47001582 AGAAGTCAAT
* *
47001592 AAATGACCGAAATACCCTCATAAGGTT
1 AAATGACCGAAATACCCTCATATGGTA
47001619 AAATGACCGAAATACCC-CATATGGTA
1 AAATGACCGAAATACCCTCATATGGTA
* *
47001645 AAATGACTGAAATACCCTCGT-TGGGTA
1 AAATGACCGAAATACCCTCATAT-GGTA
47001672 AAATGAC
1 AAATGAC
47001679 TGTTATACCT
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.44
27 30 0.56
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.22
Consensus pattern (27 bp):
AAATGACCGAAATACCCTCATATGGTA
Found at i:47002057 original size:28 final size:28
Alignment explanation
Indices: 47002021--47002110 Score: 135
Period size: 28 Copynumber: 3.2 Consensus size: 28
47002011 TGCATTATTG
47002021 CACTGTTACTGTATTGGGCTAAGGCCCA
1 CACTGTTACTGTATTGGGCTAAGGCCCA
* * *
47002049 CACTATTACTGTATTGGGTTAAGGCCTA
1 CACTGTTACTGTATTGGGCTAAGGCCCA
* *
47002077 CACTGTTACTGTATCGGGCTAAAGCCCA
1 CACTGTTACTGTATTGGGCTAAGGCCCA
47002105 CACTGT
1 CACTGT
47002111 ATTGTTACTC
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.30
Consensus pattern (28 bp):
CACTGTTACTGTATTGGGCTAAGGCCCA
Found at i:47005279 original size:40 final size:40
Alignment explanation
Indices: 47005195--47005386 Score: 187
Period size: 40 Copynumber: 4.8 Consensus size: 40
47005185 TTGAATGATG
* * ***
47005195 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCCTA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGA-T-ACTAAA
* *
47005235 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGATACTAAA
* *
47005275 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGATACTAAA
* *
47005315 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGA-TACTA-AA
* *
47005356 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAG
47005387 GAGCTATATC
Statistics
Matches: 128, Mismatches: 17, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
39 1 0.01
40 115 0.90
41 11 0.09
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGATACTAAA
Found at i:47005332 original size:80 final size:81
Alignment explanation
Indices: 47005195--47005380 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 81
47005185 TTGAATGATG
**
47005195 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCCTATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
47005259 TGTACGAGA-TACTA-A
66 TGTACGA-ATTACTATA
* * * **
47005274 TTCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
47005337 TTTGTGCGAATTACTATA
64 TTTGTACGAATTACTATA
* *
47005355 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
47005381 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
79 2 0.02
80 82 0.89
81 8 0.09
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTACGAATTACTATA
Found at i:47005398 original size:80 final size:79
Alignment explanation
Indices: 47005196--47005413 Score: 194
Period size: 80 Copynumber: 2.7 Consensus size: 79
47005186 TGAATGATGT
** * *** *
47005196 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCCTATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTAAATCCGG-TTAA-ATCCCGAAGGCATT
*
47005259 TGTACGAGATACTAATT
63 TGTACGAGATACTAATA
** * *
47005276 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTTG
*
47005341 TGCGA-ATTACT-ATAA
65 TACGAGA-TACTAAT-A
* * *
47005356 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
47005414 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
79 19 0.16
80 88 0.76
81 9 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTGT
ACGAGATACTAATA
Found at i:47010336 original size:30 final size:30
Alignment explanation
Indices: 47010286--47010344 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
47010276 CCTTTCGAGA
***
47010286 GGTCAATAAATGATTGAAATA-CCCTCATAG
1 GGTCAATAAATGACCAAAATAGCCC-CATAG
47010316 GGTCAATAAATGACCAAAATAGCCCCATA
1 GGTCAATAAATGACCAAAATAGCCCCATA
47010345 AGGTAAAATG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 22 0.88
31 3 0.12
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.22
Consensus pattern (30 bp):
GGTCAATAAATGACCAAAATAGCCCCATAG
Found at i:47010362 original size:27 final size:26
Alignment explanation
Indices: 47010293--47010438 Score: 105
Period size: 27 Copynumber: 5.3 Consensus size: 26
47010283 AGAGGTCAAT
* *
47010293 AAATGATTGAAATACCCTCATAGGGTCAA
1 AAATGACTGAAATACCC-CATAAGGT--A
**
47010322 TAAATGACCAAAATAGCCCCATAAGGTA
1 -AAATGACTGAAATA-CCCCATAAGGTA
* *
47010350 AAATGACTGAAATATCCCCGTAAGGTT
1 AAATGACTGAAATA-CCCCATAAGGTA
* *
47010377 AAATGACAGAAATACCCTCATATGGTA
1 AAATGACTGAAATACCC-CATAAGGTA
* * *
47010404 AAATTA-TCGAAATACGCCCGTAGGGTA
1 AAATGACT-GAAATAC-CCCATAAGGTA
47010431 AAATGACT
1 AAATGACT
47010439 ATTATACTTA
Statistics
Matches: 93, Mismatches: 18, Indels: 12
0.76 0.15 0.10
Matches are distributed among these distances:
26 3 0.03
27 65 0.70
28 4 0.04
30 18 0.19
31 3 0.03
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.23
Consensus pattern (26 bp):
AAATGACTGAAATACCCCATAAGGTA
Found at i:47010390 original size:54 final size:53
Alignment explanation
Indices: 47010322--47010437 Score: 130
Period size: 54 Copynumber: 2.2 Consensus size: 53
47010312 ATAGGGTCAA
47010322 TAAATGACCAAAATAGCCC-CATAAGGTAAAATGA-CTGAAATATC-CCCGTAAGGT
1 TAAATGA-CAAAATA-CCCTCATAAGGTAAAATGATC-GAAATA-CGCCCGTAAGGT
* * *
47010376 TAAATGACAGAAATACCCTCATATGGTAAAATTATCGAAATACGCCCGTAGGGT
1 TAAATGACA-AAATACCCTCATAAGGTAAAATGATCGAAATACGCCCGTAAGGT
*
47010430 AAAATGAC
1 TAAATGAC
47010438 TATTATACTT
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
53 6 0.11
54 47 0.87
55 1 0.02
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.22
Consensus pattern (53 bp):
TAAATGACAAAATACCCTCATAAGGTAAAATGATCGAAATACGCCCGTAAGGT
Found at i:47010824 original size:28 final size:28
Alignment explanation
Indices: 47010782--47010871 Score: 135
Period size: 28 Copynumber: 3.2 Consensus size: 28
47010772 TGCATTATTG
* *
47010782 CACTGTTACTGTATTGGACTAAGACCCA
1 CACTGTTACTATATTGGGCTAAGACCCA
47010810 CACTGTTACTATATTGGGCTAAGACCCA
1 CACTGTTACTATATTGGGCTAAGACCCA
* * *
47010838 CACTGATACTATATCGGGCTAAGGCCCA
1 CACTGTTACTATATTGGGCTAAGACCCA
47010866 CACTGT
1 CACTGT
47010872 ACTGTTACTG
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 56 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (28 bp):
CACTGTTACTATATTGGGCTAAGACCCA
Found at i:47012908 original size:31 final size:31
Alignment explanation
Indices: 47012870--47012931 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
47012860 AGGCAAATTA
47012870 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
47012901 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
47012932 AAAATTATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (31 bp):
CAAGAGTAATTGAATCCTAATAAAACTCTTT
Found at i:47015478 original size:20 final size:20
Alignment explanation
Indices: 47015453--47015493 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
47015443 GGCCATACTT
47015453 AGTCTTAAAAGCAGTTTTCC
1 AGTCTTAAAAGCAGTTTTCC
47015473 AGTCTTAAAAGCAGTTTTCC
1 AGTCTTAAAAGCAGTTTTCC
47015493 A
1 A
47015494 TTCATCACCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.34
Consensus pattern (20 bp):
AGTCTTAAAAGCAGTTTTCC
Found at i:47021257 original size:29 final size:28
Alignment explanation
Indices: 47021224--47021346 Score: 86
Period size: 29 Copynumber: 4.2 Consensus size: 28
47021214 AGACTATGTT
*
47021224 GGTCACACGGTCGTGTAGTTAGTCGTGTG
1 GGTCACACGGACGTGT-GTTAGTCGTGTG
* * * * *
47021253 GGTCATATGGTCGTGTGGTAGATTGTGTG
1 GGTCACACGGACGTGTGTTAG-TCGTGTG
* * *
47021282 GGTCACGC-GACTGTGTGGTTGGCCGTGTG
1 GGTCACACGGAC-GTGT-GTTAGTCGTGTG
* *
47021311 GGTCACACGGACGTGTGTGAGGTTGTGTG
1 GGTCACACGGACGTGTGTTA-GTCGTGTG
*
47021340 GGCCACA
1 GGTCACA
47021347 TGGGTGTGTG
Statistics
Matches: 71, Mismatches: 18, Indels: 10
0.72 0.18 0.10
Matches are distributed among these distances:
28 8 0.11
29 57 0.80
30 6 0.08
ACGTcount: A:0.13, C:0.16, G:0.41, T:0.29
Consensus pattern (28 bp):
GGTCACACGGACGTGTGTTAGTCGTGTG
Found at i:47029028 original size:75 final size:74
Alignment explanation
Indices: 47028905--47029048 Score: 220
Period size: 75 Copynumber: 1.9 Consensus size: 74
47028895 AAATCAGGAC
*
47028905 TATTCCCTTATTAATAAAGAAGGCAAATGTAAAGTTAGAAAAAAGAATTATATT-TTGTCCAAAA
1 TATTCCCTTATTAATAAAGAAGGCAAATGTAAAGTTACAAAAAAGAATTATATTCTT-TCCAAAA
47028969 GAATATAGCAT
65 -AATATAGCAT
* *
47028980 TATTCCCTTATTAATATAGAAGGCAAAT-TGAAAGTTACAAAAAGGAATTATATTCTTTCCAAAA
1 TATTCCCTTATTAATAAAGAAGGCAAATGT-AAAGTTACAAAAAAGAATTATATTCTTTCCAAAA
47029044 AATAT
65 AATAT
47029049 TAATTCCATG
Statistics
Matches: 64, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
74 6 0.09
75 56 0.88
76 2 0.03
ACGTcount: A:0.46, C:0.10, G:0.12, T:0.32
Consensus pattern (74 bp):
TATTCCCTTATTAATAAAGAAGGCAAATGTAAAGTTACAAAAAAGAATTATATTCTTTCCAAAAA
ATATAGCAT
Found at i:47029272 original size:138 final size:138
Alignment explanation
Indices: 47029025--47029445 Score: 695
Period size: 138 Copynumber: 3.1 Consensus size: 138
47029015 TACAAAAAGG
47029025 AATTATATTCTTTCCAAAA-AATATTAA-TTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* * * *
47029088 TATAATTTTTTTATATTAATAAATTCGGTAAAATATATATAATTAATATTTTTTATGAATCAAAT
66 TATAA-CTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
47029153 TCATATATT
130 TCATATATT
47029162 AATTATA-TCTTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTA
1 AATTATATTC-TTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTA
*
47029226 ATATAACTGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
65 ATATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
47029291 TCATATATT
130 TCATATATT
* * * *
47029300 AATTATATTCTTTCCAAAAGAATATTAATTACCATGCCTTTTATATTTAGACCAAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* * *
47029365 TATAACTGTTTATATTAATAACTTCAGTAAAATATATACAATTAATATTTTGTATGAATCGAATT
66 TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
47029430 CATATATT
131 CATATATT
47029438 AATTATAT
1 AATTATAT
47029446 CTATGTTCTC
Statistics
Matches: 267, Mismatches: 13, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
136 2 0.01
137 16 0.06
138 206 0.77
139 43 0.16
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.45
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATT
Found at i:47035751 original size:74 final size:75
Alignment explanation
Indices: 47035613--47035761 Score: 221
Period size: 74 Copynumber: 2.0 Consensus size: 75
47035603 AGGAAAAATC
* * *
47035613 AGGATTATTCTCTTACTAAGAGAGAATGCAAATGGAAAGCTATAAAAAGGAATTATATTATTTCC
1 AGGATTATTCCCTTACTAAGAGAGAAGGCAAATGGAAAACTATAAAAAGGAATTATATTATTTCC
47035678 AAAAGAATAT
66 AAAAGAATAT
* * *
47035688 AGGATTATTCCCTTA-TTAGTAGAGAAGGCAAATTGAAAATTA-AAAAAGGAATTATATTATTTC
1 AGGATTATTCCCTTACTAAG-AGAGAAGGCAAATGGAAAACTATAAAAAGGAATTATATTATTTC
47035751 CAAAAGAATAT
65 CAAAAGAATAT
47035762 TAATTTCTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
74 35 0.52
75 32 0.48
ACGTcount: A:0.46, C:0.09, G:0.15, T:0.30
Consensus pattern (75 bp):
AGGATTATTCCCTTACTAAGAGAGAAGGCAAATGGAAAACTATAAAAAGGAATTATATTATTTCC
AAAAGAATAT
Found at i:47035972 original size:138 final size:138
Alignment explanation
Indices: 47035737--47036159 Score: 704
Period size: 138 Copynumber: 3.1 Consensus size: 138
47035727 TTAAAAAAGG
* * *
47035737 AATTATATTATTTCCAAAAGAATATTAATTTCTATGTCTTTTACATTTAGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTACATTTTGACCGAAATTAATTAA
*
47035802 TATAATTGTTTATGTTAATAAATTCGGTAAAATATATACAATTAATAATTTT-TATGAATCAAAT
66 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAAT-ATTTTGTATGAATCAAAT
*
47035866 TCACATATT
130 TCATATATT
* ** * *
47035875 AATTATATTCTTTTCAAAAGAATATTAATTTCCAAATCTTTTATATTTTGATCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTACATTTTGACCGAAATTAATTAA
*
47035940 TATAATTGTTTATATTAATAAATTAGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
47036005 CATATATT
131 CATATATT
*
47036013 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTAGATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTACATTTTGACCGAAATTAATTAA
* *
47036078 TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAACCAAATT
66 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
47036143 CATATATT
131 CATATATT
47036151 AATTATATT
1 AATTATATT
47036160 TATGTTCTTT
Statistics
Matches: 265, Mismatches: 19, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
137 5 0.02
138 260 0.98
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.44
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTACATTTTGACCGAAATTAATTAA
TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATT
Found at i:47035988 original size:67 final size:67
Alignment explanation
Indices: 47035917--47036129 Score: 152
Period size: 67 Copynumber: 3.1 Consensus size: 67
47035907 CAAATCTTTT
47035917 ATATTTTGATCGAAATTAATTAATATAATTGTTTATATTAATAAATTAGGTAAAATATATACAAT
1 ATATTTTGATCGAAATTAATTAATATAATTGTTTATATTAATAAATTAGGTAAAATATATACAAT
47035982 TA
66 TA
* * * * * **
47035984 ATATTTTGTAT-G-AATCAAATTCATATATTAATTATATTCT-TTCCAA-AAGAATA-TTAATTT
1 ATATTTTG-ATCGAAAT-TAATT-A-ATA-TAATTGT-TTATATT--AATAA-ATTAGGTAAAAT
* * *
47036044 CCATGT-C-TTTT
57 --ATATACAATTA
* * * *
47036055 AGATTTTGACCGAAATTAATTAATATAACTGTTTATATTAATAAATTCGGTAAAATATATACAAT
1 ATATTTTGATCGAAATTAATTAATATAATTGTTTATATTAATAAATTAGGTAAAATATATACAAT
47036120 TA
66 TA
47036122 ATATTTTG
1 ATATTTTG
47036130 TATGAACCAA
Statistics
Matches: 103, Mismatches: 25, Indels: 36
0.63 0.15 0.22
Matches are distributed among these distances:
65 3 0.03
66 8 0.08
67 31 0.30
68 10 0.10
69 6 0.06
70 10 0.10
71 23 0.22
72 9 0.09
73 3 0.03
ACGTcount: A:0.41, C:0.07, G:0.08, T:0.44
Consensus pattern (67 bp):
ATATTTTGATCGAAATTAATTAATATAATTGTTTATATTAATAAATTAGGTAAAATATATACAAT
TA
Found at i:47036894 original size:31 final size:31
Alignment explanation
Indices: 47036858--47036920 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
47036848 TAATATTATG
47036858 ACTATTACATAATAATCCAAGAAACATACTC
1 ACTATTACATAATAATCCAAGAAACATACTC
*
47036889 ACTATTACATAATAATTCAAGAAACATACTC
1 ACTATTACATAATAATCCAAGAAACATACTC
47036920 A
1 A
47036921 TAGTGTGTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.49, C:0.21, G:0.03, T:0.27
Consensus pattern (31 bp):
ACTATTACATAATAATCCAAGAAACATACTC
Found at i:47038582 original size:19 final size:20
Alignment explanation
Indices: 47038558--47038598 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
47038548 TGTTCAACTT
47038558 TGTACA-TGTTTAGATATTG
1 TGTACATTGTTTAGATATTG
* *
47038577 TGTACATTGTTTGGATGTTG
1 TGTACATTGTTTAGATATTG
47038597 TG
1 TG
47038599 CATATCTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.20, C:0.05, G:0.27, T:0.49
Consensus pattern (20 bp):
TGTACATTGTTTAGATATTG
Found at i:47040131 original size:23 final size:22
Alignment explanation
Indices: 47040099--47040141 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
47040089 TCGACTCTTC
*
47040099 CAAAAGTTTTCAATTTAATCCTA
1 CAAAAATTTT-AATTTAATCCTA
*
47040122 CAAAAATTTTAGTTTAATCC
1 CAAAAATTTTAATTTAATCC
47040142 AATAAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.40, C:0.16, G:0.05, T:0.40
Consensus pattern (22 bp):
CAAAAATTTTAATTTAATCCTA
Found at i:47040398 original size:17 final size:17
Alignment explanation
Indices: 47040350--47040398 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
47040340 TGTTATGTTT
47040350 TTATATTATAATATTAAA
1 TTATATTATAAT-TTAAA
**
47040368 AAATATTCAT-ATTTAAA
1 TTATATT-ATAATTTAAA
47040385 TTATATTATAATTT
1 TTATATTATAATTT
47040399 CTTAAAAACT
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
16 2 0.08
17 14 0.56
18 7 0.28
19 2 0.08
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (17 bp):
TTATATTATAATTTAAA
Found at i:47048112 original size:24 final size:25
Alignment explanation
Indices: 47048066--47048115 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
47048056 GTTATTTTAA
47048066 TTTATTTAGTTATGTTTGTAATTTT
1 TTTATTTAGTTATGTTTGTAATTTT
*
47048091 TTTATGTTATTTAT-TTT-TAATTTT
1 TTTAT-TTAGTTATGTTTGTAATTTT
47048115 T
1 T
47048116 GAAAACCTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 8 0.35
25 8 0.35
26 7 0.30
ACGTcount: A:0.20, C:0.00, G:0.08, T:0.72
Consensus pattern (25 bp):
TTTATTTAGTTATGTTTGTAATTTT
Found at i:47056416 original size:49 final size:49
Alignment explanation
Indices: 47056242--47056660 Score: 570
Period size: 49 Copynumber: 8.6 Consensus size: 49
47056232 CCCTTCGGGA
* * * * *
47056242 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
47056289 CCTGTCAC--ATATATACACTGTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47056336 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47056383 CTTATCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47056432 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47056481 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG------C
47056534 ACTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 -CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47056584 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47056633 CTTATCAC--ATATATACACTTTCACATTC
1 CTTATCACATATATATACACTTTCACATTC
47056661 CAATGTTACG
Statistics
Matches: 338, Mismatches: 21, Indels: 26
0.88 0.05 0.07
Matches are distributed among these distances:
46 1 0.00
47 143 0.42
49 147 0.43
50 1 0.00
53 1 0.00
54 8 0.02
56 37 0.11
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:47056613 original size:152 final size:146
Alignment explanation
Indices: 47056241--47056660 Score: 634
Period size: 152 Copynumber: 2.9 Consensus size: 146
47056231 GCCCTTCGGG
* * * * * * *
47056241 ACTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATA
1 ACTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
* * * *
47056302 TACACTGTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATC
66 TACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATC
47056367 ACATCGGCCATTAGGC
131 ACATCGGCCATTAGGC
*
47056383 -CTTATCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 ACTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
47056447 TACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATC
66 TACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATC
*
47056512 ACATTGGCCATTAGGCCTTATC
131 ACATCGGCCATTAGG------C
47056534 ACTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 ACTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
47056599 TACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTC
66 TACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTC
47056661 CAATGTTACG
Statistics
Matches: 253, Mismatches: 14, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
141 10 0.04
142 1 0.00
143 36 0.14
145 80 0.32
151 1 0.00
152 125 0.49
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (146 bp):
ACTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
TACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATC
ACATCGGCCATTAGGC
Found at i:47058277 original size:13 final size:13
Alignment explanation
Indices: 47058259--47058283 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47058249 TACTAAATTT
47058259 TCATGGATTCAAA
1 TCATGGATTCAAA
47058272 TCATGGATTCAA
1 TCATGGATTCAA
47058284 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:47070917 original size:17 final size:17
Alignment explanation
Indices: 47070892--47070924 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
47070882 AAAAACATAA
47070892 TAAAATATATAAAAAAC
1 TAAAATATATAAAAAAC
*
47070909 TAAAGTATATAAAAAA
1 TAAAATATATAAAAAA
47070925 TACACCAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.24
Consensus pattern (17 bp):
TAAAATATATAAAAAAC
Found at i:47081025 original size:19 final size:19
Alignment explanation
Indices: 47081001--47081041 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
47080991 TATATTTTTG
47081001 AGTTTGATATTATTGAAAA
1 AGTTTGATATTATTGAAAA
47081020 AGTTTGATATTATTGAAAA
1 AGTTTGATATTATTGAAAA
47081039 AGT
1 AGT
47081042 ATGAAATTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.41
Consensus pattern (19 bp):
AGTTTGATATTATTGAAAA
Found at i:47083907 original size:9 final size:9
Alignment explanation
Indices: 47083890--47083926 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
47083880 TGAGTTTTCG
47083890 AATTCGAAT
1 AATTCGAAT
*
47083899 AACTCGAAT
1 AATTCGAAT
47083908 AATTCGAAT
1 AATTCGAAT
47083917 AATTCGAAT
1 AATTCGAAT
47083926 A
1 A
47083927 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:47084171 original size:29 final size:31
Alignment explanation
Indices: 47084139--47084197 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 31
47084129 AAACCTTTTA
47084139 TTTTCCCCCAAAA-TTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
* *
47084168 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
47084198 TCCCACCTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 12 0.46
30 9 0.35
31 5 0.19
ACGTcount: A:0.20, C:0.41, G:0.00, T:0.39
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:47084294 original size:20 final size:19
Alignment explanation
Indices: 47084252--47084292 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
47084242 TTAATATTTT
47084252 CCCTTCAAAATTTTACTCC
1 CCCTTCAAAATTTTACTCC
47084271 CCCTTCAAAATTTTACTCC
1 CCCTTCAAAATTTTACTCC
47084290 CCC
1 CCC
47084293 CTATTTACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.24, C:0.41, G:0.00, T:0.34
Consensus pattern (19 bp):
CCCTTCAAAATTTTACTCC
Found at i:47084981 original size:5 final size:5
Alignment explanation
Indices: 47084971--47084996 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
47084961 TTCGAAAATT
47084971 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
47084997 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:47085204 original size:6 final size:6
Alignment explanation
Indices: 47085190--47085224 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
47085180 AGGATTGCAA
* *
47085190 ATTTCC ATTTTC ATTTTC ATTTTC ATTTCC ATTTT
1 ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTT
47085225 TAGAAACCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.17, C:0.20, G:0.00, T:0.63
Consensus pattern (6 bp):
ATTTTC
Found at i:47085210 original size:12 final size:12
Alignment explanation
Indices: 47085190--47085224 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
47085180 AGGATTGCAA
47085190 ATTTCCATTTTC
1 ATTTCCATTTTC
*
47085202 ATTTTCATTTTC
1 ATTTCCATTTTC
47085214 ATTTCCATTTT
1 ATTTCCATTTT
47085225 TAGAAACCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.17, C:0.20, G:0.00, T:0.63
Consensus pattern (12 bp):
ATTTCCATTTTC
Found at i:47090599 original size:40 final size:39
Alignment explanation
Indices: 47090542--47090671 Score: 152
Period size: 40 Copynumber: 3.3 Consensus size: 39
47090532 TGAATCTACT
* *
47090542 GTTGTGCTATCAGGAGTATGAAAGTACTGTCAGGAGCACC
1 GTTGTGCTAT-AAGAGTACGAAAGTACTGTCAGGAGCACC
* **
47090582 GTTGTGCTACTAAGAGTACGAAAGTACGGTCAGGAGCATT
1 GTTGTGCTA-TAAGAGTACGAAAGTACTGTCAGGAGCACC
* *
47090622 GTTGTGCTATTAGAAGTACGAAAGTACTGTTAGGAGCACC
1 GTTGTGCTATAAG-AGTACGAAAGTACTGTCAGGAGCACC
* *
47090662 ATAGTGCTAT
1 GTTGTGCTAT
47090672 CAATAGCACT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 72 0.95
41 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.27
Consensus pattern (39 bp):
GTTGTGCTATAAGAGTACGAAAGTACTGTCAGGAGCACC
Found at i:47094985 original size:112 final size:112
Alignment explanation
Indices: 47094788--47095013 Score: 452
Period size: 112 Copynumber: 2.0 Consensus size: 112
47094778 TCACTTTGTG
47094788 TAATATTGATGCTAAATGATAATCGAGTCGAAAGATATACGAATTTCAGACTAGAAAACTTAAGT
1 TAATATTGATGCTAAATGATAATCGAGTCGAAAGATATACGAATTTCAGACTAGAAAACTTAAGT
47094853 TGCCAATATGAATAATCATGCAGATTTAAGTTTGTTTTTATTAGTTT
66 TGCCAATATGAATAATCATGCAGATTTAAGTTTGTTTTTATTAGTTT
47094900 TAATATTGATGCTAAATGATAATCGAGTCGAAAGATATACGAATTTCAGACTAGAAAACTTAAGT
1 TAATATTGATGCTAAATGATAATCGAGTCGAAAGATATACGAATTTCAGACTAGAAAACTTAAGT
47094965 TGCCAATATGAATAATCATGCAGATTTAAGTTTGTTTTTATTAGTTT
66 TGCCAATATGAATAATCATGCAGATTTAAGTTTGTTTTTATTAGTTT
47095012 TA
1 TA
47095014 GTTTTAGAAT
Statistics
Matches: 114, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
112 114 1.00
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.37
Consensus pattern (112 bp):
TAATATTGATGCTAAATGATAATCGAGTCGAAAGATATACGAATTTCAGACTAGAAAACTTAAGT
TGCCAATATGAATAATCATGCAGATTTAAGTTTGTTTTTATTAGTTT
Found at i:47104339 original size:40 final size:40
Alignment explanation
Indices: 47104279--47104501 Score: 365
Period size: 40 Copynumber: 5.6 Consensus size: 40
47104269 CAAGCTCAAT
* * * * *
47104279 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
*
47104319 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
47104359 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
* * *
47104399 TGCCTTCGGGTCTTAGTCCGTATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
47104439 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
47104479 TGCCTTCGGGTCTTAGCCCGGAT
1 TGCCTTCGGGTCTTAGCCCGGAT
47104502 GTATTCAAAT
Statistics
Matches: 170, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 170 1.00
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
Found at i:47116997 original size:25 final size:26
Alignment explanation
Indices: 47116964--47117013 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
47116954 AAATCATGGA
*
47116964 TAAATTAAAGC-ATTTAAAATACATT
1 TAAAGTAAAGCTATTTAAAATACATT
*
47116989 TAAAGTAAAGCTTATTTAACATACA
1 TAAAGTAAAGC-TATTTAAAATACA
47117014 AACTTACCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
27 11 0.52
ACGTcount: A:0.50, C:0.10, G:0.06, T:0.34
Consensus pattern (26 bp):
TAAAGTAAAGCTATTTAAAATACATT
Found at i:47122378 original size:29 final size:28
Alignment explanation
Indices: 47122344--47122409 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
47122334 TATGGCCCAT
* *
47122344 TCACATTTATGTGGCCTATTAGGCCCAAA
1 TCACATTTATATGGCC-ACTAGGCCCAAA
* *
47122373 TCACATTCATATGGCCACTATGCCCAAA
1 TCACATTTATATGGCCACTAGGCCCAAA
47122401 TCACATTTA
1 TCACATTTA
47122410 CAATCACGCT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 18 0.56
29 14 0.44
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.30
Consensus pattern (28 bp):
TCACATTTATATGGCCACTAGGCCCAAA
Found at i:47123931 original size:16 final size:16
Alignment explanation
Indices: 47123906--47123937 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
47123896 AAATTTGAGA
*
47123906 TTTTGGGATTTTTGGG
1 TTTTGAGATTTTTGGG
47123922 TTTTGAGATTTTTGGG
1 TTTTGAGATTTTTGGG
47123938 GAGTTACAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.00, G:0.34, T:0.56
Consensus pattern (16 bp):
TTTTGAGATTTTTGGG
Done.