Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 15 of 240
Found at i:5664249 original size:29 final size:30
Alignment explanation
Indices: 5664195--5664288 Score: 122
Period size: 30 Copynumber: 3.1 Consensus size: 30
5664185 TTTAAAATAC
5664195 TTTTAAAATACTTTTTTAAAATTTTTTTAA
1 TTTTAAAATACTTTTTTAAAATTTTTTTAA
*
5664225 TTTTAAAATACTTTTTT-TAATTTTTTTAA
1 TTTTAAAATACTTTTTTAAAATTTTTTTAA
*
5664254 TTTT-AAAT-TTTTTTTAAAATACTTTTTTTAA
1 TTTTAAAATACTTTTTT-AAA-A-TTTTTTTAA
5664285 TTTT
1 TTTT
5664289 TATTTTAATT
Statistics
Matches: 57, Mismatches: 3, Indels: 7
0.85 0.04 0.10
Matches are distributed among these distances:
27 6 0.11
28 4 0.07
29 16 0.28
30 18 0.32
31 13 0.23
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (30 bp):
TTTTAAAATACTTTTTTAAAATTTTTTTAA
Found at i:5664250 original size:40 final size:38
Alignment explanation
Indices: 5664165--5664289 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 38
5664155 CCGAATAATA
* **
5664165 AATTTTTTT-ATTCTTTTATTTTTAAAATAC-TTTTAA
1 AATTTTTTTAATTTTTTTATTTTTAAAATACTTTTTTT
*
5664201 AATACTTTTTTAAAATTTTTTTAATTTTAAAATACTTTTTTT
1 AAT--TTTTTT--AATTTTTTTATTTTTAAAATACTTTTTTT
5664243 AATTTTTTTAATTTTAAATTT-TTTTTAAAATACTTTTTTT
1 AATTTTTTTAATTTT---TTTATTTTTAAAATACTTTTTTT
5664283 AATTTTT
1 AATTTTT
5664290 ATTTTAATTT
Statistics
Matches: 75, Mismatches: 5, Indels: 14
0.80 0.05 0.15
Matches are distributed among these distances:
36 3 0.04
38 12 0.16
40 31 0.41
41 22 0.29
42 7 0.09
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (38 bp):
AATTTTTTTAATTTTTTTATTTTTAAAATACTTTTTTT
Found at i:5664258 original size:70 final size:71
Alignment explanation
Indices: 5664167--5664304 Score: 190
Period size: 70 Copynumber: 2.0 Consensus size: 71
5664157 GAATAATAAA
*
5664167 TTTTTTTATTCTTTTATTTTTAAAATACTTTTAAAATAC-TTTTTTAAAATTT-TTTTAATTTTA
1 TTTTTTTATTCTTTTAATTTTAAAATACTTTTAAAATACTTTTTTTAAAATTTATTTTAATTTTA
5664230 AAATAC
66 AAATAC
* * ** **
5664236 TTTTTTTAATTTTTTTAATTTTAAATTTTTTTTAAAATACTTTTTTTAATTTTTATTTTAATTTT
1 TTTTTTT-ATTCTTTTAATTTTAAAATACTTTTAAAATACTTTTTTTAAAATTTATTTTAATTTT
5664301 AAAA
65 AAAA
5664305 ATAAAATTTT
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
69 7 0.12
70 27 0.46
71 11 0.19
72 14 0.24
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (71 bp):
TTTTTTTATTCTTTTAATTTTAAAATACTTTTAAAATACTTTTTTTAAAATTTATTTTAATTTTA
AAATAC
Found at i:5664517 original size:22 final size:22
Alignment explanation
Indices: 5664492--5664541 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
5664482 CCGTTTTTTC
*
5664492 ATTATTTTGTTA-TCATTTCGTT
1 ATTATTTTGCTACT-ATTTCGTT
* *
5664514 ATTATATTGCTACTATTTTGTT
1 ATTATTTTGCTACTATTTCGTT
5664536 ATTATT
1 ATTATT
5664542 GTTCGGATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 22 0.96
23 1 0.04
ACGTcount: A:0.22, C:0.08, G:0.08, T:0.62
Consensus pattern (22 bp):
ATTATTTTGCTACTATTTCGTT
Found at i:5665925 original size:67 final size:66
Alignment explanation
Indices: 5665802--5665927 Score: 148
Period size: 67 Copynumber: 1.9 Consensus size: 66
5665792 TAATACGAGT
* * * * *
5665802 TTAAGTATATTTAAATTTAAATTCTTTTAAGTATTGCAACAATAATAGTTTCAATTAAGCTAAGA
1 TTAAGTATATTCAAATTCAAATTCTTTTAAGTATTGCAACAACAACAATTTCAATTAAGCTAAGA
5665867 C
66 C
* *
5665868 TTAAGTGATATTCAAATTCACATTCTTTTGAA-TATTGCAATAACAACAATGTT-AATTAAG
1 TTAAGT-ATATTCAAATTCAAATTCTTTT-AAGTATTGCAACAACAACAAT-TTCAATTAAG
5665928 TTGAGATTTA
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
66 6 0.12
67 40 0.80
68 4 0.08
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (66 bp):
TTAAGTATATTCAAATTCAAATTCTTTTAAGTATTGCAACAACAACAATTTCAATTAAGCTAAGA
C
Found at i:5667627 original size:2 final size:2
Alignment explanation
Indices: 5667620--5667646 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
5667610 CACAAGACTT
5667620 GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA G
5667647 TCCTAGAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:5667839 original size:15 final size:14
Alignment explanation
Indices: 5667814--5667860 Score: 58
Period size: 15 Copynumber: 3.2 Consensus size: 14
5667804 TATAATATCA
5667814 ATTTAATTTTTAAT
1 ATTTAATTTTTAAT
*
5667828 ATTTATATTTTTATT
1 ATTTA-ATTTTTAAT
*
5667843 AATTTACTTTTTAAT
1 -ATTTAATTTTTAAT
5667858 ATT
1 ATT
5667861 ATATATTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 8 0.29
15 15 0.54
16 5 0.18
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (14 bp):
ATTTAATTTTTAAT
Found at i:5669389 original size:13 final size:13
Alignment explanation
Indices: 5669371--5669422 Score: 59
Period size: 13 Copynumber: 4.0 Consensus size: 13
5669361 CGGCTGATTG
5669371 TTAATTTGATTAA
1 TTAATTTGATTAA
* *
5669384 TTAATTTTATTTA
1 TTAATTTGATTAA
*
5669397 TTGATTTGATTAA
1 TTAATTTGATTAA
* *
5669410 TTGATTTTATTAA
1 TTAATTTGATTAA
5669423 CGATTTATTT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.60
Consensus pattern (13 bp):
TTAATTTGATTAA
Found at i:5683832 original size:19 final size:19
Alignment explanation
Indices: 5683803--5683839 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
5683793 TGGGCTGATG
5683803 TTAATTTGGGCTTAGGGTTA
1 TTAATTTGGGCTT-GGGTTA
5683823 TTAA-TTGGGCTTGGGTT
1 TTAATTTGGGCTTGGGTT
5683840 GTTGTTTGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.16, C:0.05, G:0.32, T:0.46
Consensus pattern (19 bp):
TTAATTTGGGCTTGGGTTA
Found at i:5683848 original size:18 final size:19
Alignment explanation
Indices: 5683806--5683851 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
5683796 GCTGATGTTA
5683806 ATTTGGGCTTAGGGTTATT
1 ATTTGGGCTTAGGGTTATT
* *
5683825 AATTGGGCTT-GGGTTGTT
1 ATTTGGGCTTAGGGTTATT
*
5683843 GTTTGGGCT
1 ATTTGGGCT
5683852 GGTGTAACAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 14 0.61
19 9 0.39
ACGTcount: A:0.11, C:0.07, G:0.37, T:0.46
Consensus pattern (19 bp):
ATTTGGGCTTAGGGTTATT
Found at i:5685759 original size:20 final size:21
Alignment explanation
Indices: 5685734--5685775 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
5685724 GTCATCGTCC
*
5685734 GCTTTTCTTTTTCTTTT-TTT
1 GCTTTTCTATTTCTTTTCTTT
*
5685754 GCTTTTCTATTTGTTTTCTTT
1 GCTTTTCTATTTCTTTTCTTT
5685775 G
1 G
5685776 TTTCCGGCAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.02, C:0.14, G:0.10, T:0.74
Consensus pattern (21 bp):
GCTTTTCTATTTCTTTTCTTT
Found at i:5694009 original size:16 final size:16
Alignment explanation
Indices: 5693990--5694022 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
5693980 GTTTTAGAGC
5693990 TATAAATATGTCAACA
1 TATAAATATGTCAACA
5694006 TATAAATATGTCAACA
1 TATAAATATGTCAACA
5694022 T
1 T
5694023 CGAAATTCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.33
Consensus pattern (16 bp):
TATAAATATGTCAACA
Found at i:5694028 original size:16 final size:16
Alignment explanation
Indices: 5693993--5694028 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
5693983 TTAGAGCTAT
*
5693993 AAATATGTCAACATAT
1 AAATATGTCAACATAG
*
5694009 AAATATGTCAACATCG
1 AAATATGTCAACATAG
5694025 AAAT
1 AAAT
5694029 TCAGTAATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.14, G:0.08, T:0.28
Consensus pattern (16 bp):
AAATATGTCAACATAG
Found at i:5697828 original size:29 final size:30
Alignment explanation
Indices: 5697769--5697826 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
5697759 TCCGAGCCTT
*
5697769 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* * *
5697799 GGGGCAAAATTTTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
5697827 AGAGTCGAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.41, C:0.03, G:0.22, T:0.33
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:5698056 original size:13 final size:13
Alignment explanation
Indices: 5698038--5698069 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
5698028 TTTCCAGCAA
5698038 TTATGAATTTATT
1 TTATGAATTTATT
5698051 TTATGAATTTATT
1 TTATGAATTTATT
*
5698064 TGATGA
1 TTATGA
5698070 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:5698277 original size:50 final size:50
Alignment explanation
Indices: 5698164--5698405 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
5698154 ATTTGGGTAA
* * *
5698164 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
5698220 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
5698270 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
5698320 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
5698370 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
5698406 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:5698353 original size:100 final size:103
Alignment explanation
Indices: 5698164--5698413 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
5698154 ATTTGGGTAA
5698164 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
5698229 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
5698270 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
5698332 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
5698370 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
5698414 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:5700581 original size:45 final size:44
Alignment explanation
Indices: 5700531--5700804 Score: 381
Period size: 45 Copynumber: 6.1 Consensus size: 44
5700521 TAACGGTAGT
* *
5700531 AGTAACAGTATTCAACACACAAAGTGCTGAATCTGTAACATTAAC
1 AGTAACAGTATTCGACACACAAAGTGCTGAATC-GTAACAGTAAC
*
5700576 GGTAACAGTATTCGACACACAAAGTG-TCGAATCGATAACAGTAAC
1 AGTAACAGTATTCGACACACAAAGTGCT-GAATCG-TAACAGTAAC
*
5700621 AGTAACAGTATTCGACACACAAAGTGCTGAATCTGTAACATTAAC
1 AGTAACAGTATTCGACACACAAAGTGCTGAATC-GTAACAGTAAC
*
5700666 GGTAACAGTATTCGACACACAAAGTG-TCGAATCGATAACAGTAAC
1 AGTAACAGTATTCGACACACAAAGTGCT-GAATCG-TAACAGTAAC
* *
5700711 AGTAACAGTATTCGACACACAAAGTGCCGAGTCGGTAACAGTAAC
1 AGTAACAGTATTCGACACACAAAGTGCTGAATC-GTAACAGTAAC
* *
5700756 AGTAACAGTATTCGACACATAAAGTGCCGAATCAGTAACAGTAAC
1 AGTAACAGTATTCGACACACAAAGTGCTGAATC-GTAACAGTAAC
5700801 AGTA
1 AGTA
5700805 GTCGGCACAT
Statistics
Matches: 208, Mismatches: 13, Indels: 16
0.88 0.05 0.07
Matches are distributed among these distances:
44 4 0.02
45 201 0.97
46 3 0.01
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (44 bp):
AGTAACAGTATTCGACACACAAAGTGCTGAATCGTAACAGTAAC
Found at i:5700653 original size:90 final size:90
Alignment explanation
Indices: 5700531--5700804 Score: 460
Period size: 90 Copynumber: 3.0 Consensus size: 90
5700521 TAACGGTAGT
*
5700531 AGTAACAGTATTCAACACACAAAGTGCTGAATCTGTAACATTAACGGTAACAGTATTCGACACAC
1 AGTAACAGTATTCGACACACAAAGTGCTGAATCTGTAACATTAACGGTAACAGTATTCGACACAC
5700596 AAAGTGTCGAATCGATAACAGTAAC
66 AAAGTGTCGAATCGATAACAGTAAC
5700621 AGTAACAGTATTCGACACACAAAGTGCTGAATCTGTAACATTAACGGTAACAGTATTCGACACAC
1 AGTAACAGTATTCGACACACAAAGTGCTGAATCTGTAACATTAACGGTAACAGTATTCGACACAC
5700686 AAAGTGTCGAATCGATAACAGTAAC
66 AAAGTGTCGAATCGATAACAGTAAC
* * * * * *
5700711 AGTAACAGTATTCGACACACAAAGTGCCGAGTCGGTAACAGTAACAGTAACAGTATTCGACACAT
1 AGTAACAGTATTCGACACACAAAGTGCTGAATCTGTAACATTAACGGTAACAGTATTCGACACAC
*
5700776 AAAGTGCCGAATC-AGTAACAGTAAC
66 AAAGTGTCGAATCGA-TAACAGTAAC
5700801 AGTA
1 AGTA
5700805 GTCGGCACAT
Statistics
Matches: 175, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
89 1 0.01
90 174 0.99
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (90 bp):
AGTAACAGTATTCGACACACAAAGTGCTGAATCTGTAACATTAACGGTAACAGTATTCGACACAC
AAAGTGTCGAATCGATAACAGTAAC
Found at i:5700828 original size:38 final size:39
Alignment explanation
Indices: 5700614--5700831 Score: 150
Period size: 45 Copynumber: 5.2 Consensus size: 39
5700604 GAATCGATAA
* * *
5700614 CAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAAT
1 CAGTAACAGTAACAGTAGTCGACACATAAAGTGCCGAAT
* * * *
5700653 CTGTAACATTAACGGTAACAGTATTCGACACACAAAGTGTCGAATCGATAA
1 CAGTAAC----A--GTAACAGTAGTCGACACATAAAGTG-C----CGA-AT
* * *
5700704 CAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAGTCGGTAA
1 CAGTAACAGTAACAGTAGTCGACACATAAAGTGCCGA------AT
*
5700749 CAGTAACAGTAACAGTATTCGACACATAAAGTGCCGAAT
1 CAGTAACAGTAACAGTAGTCGACACATAAAGTGCCGAAT
* *
5700788 CAGTAACAGTAACAGTAGTCGGCACAT-AAGTGCCTAAT
1 CAGTAACAGTAACAGTAGTCGACACATAAAGTGCCGAAT
5700826 CAGTAA
1 CAGTAA
5700832 GCTGGCAAAT
Statistics
Matches: 153, Mismatches: 9, Indels: 35
0.78 0.05 0.18
Matches are distributed among these distances:
38 16 0.10
39 32 0.21
40 3 0.02
43 1 0.01
44 1 0.01
45 89 0.58
46 1 0.01
47 1 0.01
50 2 0.01
51 7 0.05
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.21
Consensus pattern (39 bp):
CAGTAACAGTAACAGTAGTCGACACATAAAGTGCCGAAT
Found at i:5704753 original size:9 final size:9
Alignment explanation
Indices: 5704736--5704780 Score: 60
Period size: 9 Copynumber: 5.3 Consensus size: 9
5704726 TTTTTTCTCC
5704736 AAAACCCTA
1 AAAACCCTA
*
5704745 AAAATCCTA
1 AAAACCCTA
5704754 AAAACCCT-
1 AAAACCCTA
5704762 AAAACCCT-
1 AAAACCCTA
5704770 -AAACCCTA
1 AAAACCCTA
5704778 AAA
1 AAA
5704781 TCCAAAACCT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
7 7 0.22
8 8 0.25
9 17 0.53
ACGTcount: A:0.56, C:0.31, G:0.00, T:0.13
Consensus pattern (9 bp):
AAAACCCTA
Found at i:5704756 original size:8 final size:8
Alignment explanation
Indices: 5704736--5704789 Score: 58
Period size: 9 Copynumber: 6.8 Consensus size: 8
5704726 TTTTTTCTCC
5704736 AAAACCCT
1 AAAACCCT
*
5704744 AAAAATCCT
1 -AAAACCCT
5704753 AAAAACCCT
1 -AAAACCCT
5704762 AAAACCCT
1 AAAACCCT
5704770 -AAACCCT
1 AAAACCCT
*
5704777 AAAATCC-
1 AAAACCCT
5704784 AAAACC
1 AAAACC
5704790 TACAAGTCAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
7 12 0.30
8 13 0.32
9 15 0.38
ACGTcount: A:0.54, C:0.33, G:0.00, T:0.13
Consensus pattern (8 bp):
AAAACCCT
Found at i:5713695 original size:2 final size:2
Alignment explanation
Indices: 5713688--5713743 Score: 103
Period size: 2 Copynumber: 28.0 Consensus size: 2
5713678 CCCGCAAGAC
*
5713688 AG AG AG AG AG AG AG AG AG AC AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
5713730 AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG
5713744 GGAGGACCTG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.02, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:5722935 original size:20 final size:20
Alignment explanation
Indices: 5722907--5722946 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
5722897 ATCTAAATGA
*
5722907 CAATACAATTACTTAACTTT
1 CAATACAATCACTTAACTTT
*
5722927 CAATTCAATCACTTAACTTT
1 CAATACAATCACTTAACTTT
5722947 TAAAAAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
CAATACAATCACTTAACTTT
Found at i:5733244 original size:34 final size:35
Alignment explanation
Indices: 5733186--5733252 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
5733176 CAAACACCAG
* * *
5733186 AAAATATTTTCCTGTAAGTCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
5733221 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
5733253 TATTTTACTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:5736539 original size:15 final size:16
Alignment explanation
Indices: 5736521--5736552 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
5736511 TTAATTAATA
5736521 TAATTT-ATAATATTT
1 TAATTTAATAATATTT
5736536 TAATTTAATAATATTT
1 TAATTTAATAATATTT
5736552 T
1 T
5736553 TATAATATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTAATAATATTT
Found at i:5736543 original size:25 final size:26
Alignment explanation
Indices: 5736508--5736560 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 26
5736498 TATTATCTTA
5736508 ATTTTAATTAAT-ATA-ATTTATAAT
1 ATTTTAATTAATAATATATTTATAAT
*
5736532 ATTTTAATTTAATAATATTTTTATAAT
1 ATTTTAA-TTAATAATATATTTATAAT
5736559 AT
1 AT
5736561 AAATCAAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 7 0.28
25 5 0.20
26 3 0.12
27 10 0.40
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (26 bp):
ATTTTAATTAATAATATATTTATAAT
Found at i:5739454 original size:27 final size:27
Alignment explanation
Indices: 5739420--5739514 Score: 115
Period size: 27 Copynumber: 3.6 Consensus size: 27
5739410 TCCTGCTGCC
*
5739420 GCTGAAGTTCCAACTGCCGTTGATGCT
1 GCTGAAGCTCCAACTGCCGTTGATGCT
* * *
5739447 GCTGAAGTTCCAACTG-C--TGCTGCC
1 GCTGAAGCTCCAACTGCCGTTGATGCT
* *
5739471 GCTGAAGCTCCAACAGACGTTGATGCT
1 GCTGAAGCTCCAACTGCCGTTGATGCT
5739498 GCTGAAGCTCCAACTGC
1 GCTGAAGCTCCAACTGC
5739515 TGCTGCCGCT
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
24 19 0.33
25 1 0.02
26 1 0.02
27 36 0.63
ACGTcount: A:0.21, C:0.29, G:0.25, T:0.24
Consensus pattern (27 bp):
GCTGAAGCTCCAACTGCCGTTGATGCT
Found at i:5739492 original size:51 final size:49
Alignment explanation
Indices: 5739412--5739667 Score: 273
Period size: 51 Copynumber: 5.1 Consensus size: 49
5739402 GACGAAGCTC
* * * * *
5739412 CTGCTGCCGCTGAAGTTCCAACTGCCGTTGATGCTGCTGAAGTTCCAACTG
1 CTGCTGCCGCTGATGCTCCAACTG-CG-TGCTGCCGCTGAAGCTCCAACTG
* * * *
5739463 CTGCTGCCGCTGAAGCTCCAACAGACGTTGATGCTGCTGAAGCTCCAACTG
1 CTGCTGCCGCTGATGCTCCAACTG-CG-TGCTGCCGCTGAAGCTCCAACTG
* * *
5739514 CTGCTGCCGCTGATGCTCCAATTGC-TGCTGCCGCTGATGCTCCAATTG
1 CTGCTGCCGCTGATGCTCCAACTGCGTGCTGCCGCTGAAGCTCCAACTG
* *
5739562 CTGCTGCCGCTGATGCTCAAACTGC-TGCTGCCGCTGATGCTCCAACTG
1 CTGCTGCCGCTGATGCTCCAACTGCGTGCTGCCGCTGAAGCTCCAACTG
* * * *
5739610 CTGCTGCCGCTGATGCTCCAACTGATGCTGCTGCCGTTGTAGTTCCAACTG
1 CTGCTGCCGCTGATGCTCCAACTG-CG-TGCTGCCGCTGAAGCTCCAACTG
*
5739661 CCGCTGC
1 CTGCTGC
5739668 TGTTCAACTT
Statistics
Matches: 181, Mismatches: 21, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
48 87 0.48
50 1 0.01
51 93 0.51
ACGTcount: A:0.16, C:0.33, G:0.25, T:0.26
Consensus pattern (49 bp):
CTGCTGCCGCTGATGCTCCAACTGCGTGCTGCCGCTGAAGCTCCAACTG
Found at i:5739531 original size:24 final size:24
Alignment explanation
Indices: 5739516--5739640 Score: 214
Period size: 24 Copynumber: 5.2 Consensus size: 24
5739506 TCCAACTGCT
*
5739516 GCTGCCGCTGATGCTCCAATTGCT
1 GCTGCCGCTGATGCTCCAACTGCT
*
5739540 GCTGCCGCTGATGCTCCAATTGCT
1 GCTGCCGCTGATGCTCCAACTGCT
*
5739564 GCTGCCGCTGATGCTCAAACTGCT
1 GCTGCCGCTGATGCTCCAACTGCT
5739588 GCTGCCGCTGATGCTCCAACTGCT
1 GCTGCCGCTGATGCTCCAACTGCT
*
5739612 GCTGCCGCTGATGCTCCAACTGAT
1 GCTGCCGCTGATGCTCCAACTGCT
5739636 GCTGC
1 GCTGC
5739641 TGCCGTTGTA
Statistics
Matches: 97, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 97 1.00
ACGTcount: A:0.14, C:0.34, G:0.26, T:0.26
Consensus pattern (24 bp):
GCTGCCGCTGATGCTCCAACTGCT
Found at i:5739556 original size:48 final size:48
Alignment explanation
Indices: 5739412--5739640 Score: 269
Period size: 48 Copynumber: 4.6 Consensus size: 48
5739402 GACGAAGCTC
* * * * * *
5739412 CTGCTGCCGCTGAAGTTCCAACTGCCGTTGATGCTGCTGAAGTTCCAACTG
1 CTGCTGCCGCTGATGCTCCAACTG-C--TGCTGCCGCTGATGCTCCAACTG
* * * * *
5739463 CTGCTGCCGCTGAAGCTCCAACAGACGTTGATGCTGCTGAAGCTCCAACTG
1 CTGCTGCCGCTGATGCTCCAACTG-C--TGCTGCCGCTGATGCTCCAACTG
* *
5739514 CTGCTGCCGCTGATGCTCCAATTGCTGCTGCCGCTGATGCTCCAATTG
1 CTGCTGCCGCTGATGCTCCAACTGCTGCTGCCGCTGATGCTCCAACTG
*
5739562 CTGCTGCCGCTGATGCTCAAACTGCTGCTGCCGCTGATGCTCCAACTG
1 CTGCTGCCGCTGATGCTCCAACTGCTGCTGCCGCTGATGCTCCAACTG
*
5739610 CTGCTGCCGCTGATGCTCCAACTGATGCTGC
1 CTGCTGCCGCTGATGCTCCAACTGCTGCTGC
5739641 TGCCGTTGTA
Statistics
Matches: 162, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
48 93 0.57
50 1 0.01
51 68 0.42
ACGTcount: A:0.16, C:0.33, G:0.25, T:0.26
Consensus pattern (48 bp):
CTGCTGCCGCTGATGCTCCAACTGCTGCTGCCGCTGATGCTCCAACTG
Found at i:5739588 original size:72 final size:72
Alignment explanation
Indices: 5739412--5739645 Score: 261
Period size: 72 Copynumber: 3.1 Consensus size: 72
5739402 GACGAAGCTC
* * * * * * *
5739412 CTGCTGCCGCTGAAGTTCCAACTGCCGTTGATGCTGCTGAAGTTCCAACTGCTGCTGCCGCTGAA
1 CTGCTGCCGCTGAAGCTCAAACTG-C--TGCTGCCGCTGATGCTCCAACTGCTGCTGCCGCTGAT
**
5739477 GCTCCAACAG
63 GCTCCAATTG
* * * *
5739487 ACGTTGATGCTGCTGAAGCTCCAACTGCTGCTGCCGCTGATGCTCCAATTGCTGCTGCCGCTGAT
1 -C--TGCTGCCGCTGAAGCTCAAACTGCTGCTGCCGCTGATGCTCCAACTGCTGCTGCCGCTGAT
5739552 GCTCCAATTG
63 GCTCCAATTG
*
5739562 CTGCTGCCGCTGATGCTCAAACTGCTGCTGCCGCTGATGCTCCAACTGCTGCTGCCGCTGATGCT
1 CTGCTGCCGCTGAAGCTCAAACTGCTGCTGCCGCTGATGCTCCAACTGCTGCTGCCGCTGATGCT
5739627 CCAACTGATG
66 CCAA-T--TG
5739637 CTGCTGCCG
1 CTGCTGCCG
5739646 TTGTAGTTCC
Statistics
Matches: 137, Mismatches: 16, Indels: 11
0.84 0.10 0.07
Matches are distributed among these distances:
72 63 0.46
73 1 0.01
74 1 0.01
75 50 0.36
76 1 0.01
77 1 0.01
78 20 0.15
ACGTcount: A:0.16, C:0.33, G:0.26, T:0.26
Consensus pattern (72 bp):
CTGCTGCCGCTGAAGCTCAAACTGCTGCTGCCGCTGATGCTCCAACTGCTGCTGCCGCTGATGCT
CCAATTG
Found at i:5739660 original size:27 final size:27
Alignment explanation
Indices: 5739461--5739645 Score: 193
Period size: 24 Copynumber: 7.4 Consensus size: 27
5739451 AAGTTCCAAC
* *
5739461 TGCTGCTGCCGCTGAAGCTCCAACAGA
1 TGCTGCTGCCGCTGATGCTCCAACTGA
* * * * *
5739488 CGTTGATGCTGCTGAAGCTCCAAC---
1 TGCTGCTGCCGCTGATGCTCCAACTGA
5739512 TGCTGCTGCCGCTGATGCTCCAA-T--
1 TGCTGCTGCCGCTGATGCTCCAACTGA
5739536 TGCTGCTGCCGCTGATGCTCCAA-T--
1 TGCTGCTGCCGCTGATGCTCCAACTGA
*
5739560 TGCTGCTGCCGCTGATGCTCAAAC---
1 TGCTGCTGCCGCTGATGCTCCAACTGA
5739584 TGCTGCTGCCGCTGATGCTCCAAC---
1 TGCTGCTGCCGCTGATGCTCCAACTGA
5739608 TGCTGCTGCCGCTGATGCTCCAACTGA
1 TGCTGCTGCCGCTGATGCTCCAACTGA
5739635 TGCTGCTGCCG
1 TGCTGCTGCCG
5739646 TTGTAGTTCC
Statistics
Matches: 142, Mismatches: 11, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
24 111 0.78
27 31 0.22
ACGTcount: A:0.15, C:0.34, G:0.26, T:0.25
Consensus pattern (27 bp):
TGCTGCTGCCGCTGATGCTCCAACTGA
Found at i:5739666 original size:27 final size:27
Alignment explanation
Indices: 5739412--5739669 Score: 185
Period size: 24 Copynumber: 10.2 Consensus size: 27
5739402 GACGAAGCTC
* * *
5739412 CTGCTGCCGCTGAAGTTCCAACTGCCG
1 CTGCTGCCGCTGATGCTCCAACTGACG
* * * * *
5739439 TTGATGCTGCTGAAGTTCCAACT---G
1 CTGCTGCCGCTGATGCTCCAACTGACG
* *
5739463 CTGCTGCCGCTGAAGCTCCAACAGACG
1 CTGCTGCCGCTGATGCTCCAACTGACG
* * * *
5739490 TTGATGCTGCTGAAGCTCCAACT---G
1 CTGCTGCCGCTGATGCTCCAACTGACG
*
5739514 CTGCTGCCGCTGATGCTCCAA-T--TG
1 CTGCTGCCGCTGATGCTCCAACTGACG
*
5739538 CTGCTGCCGCTGATGCTCCAA-T--TG
1 CTGCTGCCGCTGATGCTCCAACTGACG
*
5739562 CTGCTGCCGCTGATGCTCAAACT---G
1 CTGCTGCCGCTGATGCTCCAACTGACG
5739586 CTGCTGCCGCTGATGCTCCAACT---G
1 CTGCTGCCGCTGATGCTCCAACTGACG
*
5739610 CTGCTGCCGCTGATGCTCCAACTGATG
1 CTGCTGCCGCTGATGCTCCAACTGACG
* * *
5739637 CTGCTGCCGTTG-TAGTTCCAACTGCCG
1 CTGCTGCCGCTGAT-GCTCCAACTGACG
5739664 CTGCTG
1 CTGCTG
5739670 TTCAACTTGA
Statistics
Matches: 200, Mismatches: 22, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
23 1 0.00
24 129 0.64
25 1 0.00
26 1 0.00
27 68 0.34
ACGTcount: A:0.16, C:0.33, G:0.26, T:0.26
Consensus pattern (27 bp):
CTGCTGCCGCTGATGCTCCAACTGACG
Found at i:5749068 original size:27 final size:26
Alignment explanation
Indices: 5749003--5749087 Score: 84
Period size: 27 Copynumber: 3.3 Consensus size: 26
5748993 CATATCTATC
* * * *
5749003 CATATAAACATTTCGTACAATCACTT
1 CATATAATCATTTCATATAATCAATT
5749029 CATAT-ATCTATTTTCATATAATCAATT
1 CATATAATC-A-TTTCATATAATCAATT
*
5749056 CATATAATCATTTCATATACTC-ATT
1 CATATAATCATTTCATATAATCAATT
*
5749081 TATATAA
1 CATATAA
5749088 CTATTTTGTA
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
25 11 0.22
26 17 0.34
27 19 0.38
28 3 0.06
ACGTcount: A:0.39, C:0.18, G:0.01, T:0.42
Consensus pattern (26 bp):
CATATAATCATTTCATATAATCAATT
Found at i:5749135 original size:26 final size:26
Alignment explanation
Indices: 5749101--5749172 Score: 65
Period size: 26 Copynumber: 2.7 Consensus size: 26
5749091 TTTTGTATAC
*
5749101 CCATCTCATATTACAATTTCGTAG-AA
1 CCATTTCATATTACAATTTCG-AGTAA
* * * *
5749127 TCATTTCATATAACCATTTTGAGTAA
1 CCATTTCATATTACAATTTCGAGTAA
*
5749153 CCATTTCATTTTACACATTT
1 CCATTTCATATTACA-ATTT
5749173 AACATGTATT
Statistics
Matches: 35, Mismatches: 9, Indels: 3
0.74 0.19 0.06
Matches are distributed among these distances:
25 2 0.06
26 29 0.83
27 4 0.11
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.42
Consensus pattern (26 bp):
CCATTTCATATTACAATTTCGAGTAA
Found at i:5749144 original size:13 final size:13
Alignment explanation
Indices: 5749003--5749145 Score: 74
Period size: 13 Copynumber: 11.0 Consensus size: 13
5748993 CATATCTATC
*
5749003 CATATAAACATTT
1 CATATAACCATTT
* * * *
5749016 CGTACAATCACTT
1 CATATAACCATTT
* *
5749029 CATATATCTATTTT
1 CATATAACCA-TTT
* *
5749043 CATATAATCAATT
1 CATATAACCATTT
*
5749056 CATATAATCATTT
1 CATATAACCATTT
5749069 CATAT-ACTCATTT
1 CATATAAC-CATTT
*
5749082 -ATATAACTATTT
1 CATATAACCATTT
** * *
5749094 TGTATACCCATCT
1 CATATAACCATTT
* *
5749107 CATATTACAATTT
1 CATATAACCATTT
* * *
5749120 CGTAGAATCATTT
1 CATATAACCATTT
5749133 CATATAACCATTT
1 CATATAACCATTT
5749146 TGAGTAACCA
Statistics
Matches: 91, Mismatches: 35, Indels: 8
0.68 0.26 0.06
Matches are distributed among these distances:
12 9 0.10
13 73 0.80
14 9 0.10
ACGTcount: A:0.36, C:0.19, G:0.03, T:0.43
Consensus pattern (13 bp):
CATATAACCATTT
Found at i:5750932 original size:19 final size:21
Alignment explanation
Indices: 5750878--5750937 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
5750868 TGGGTGAATT
*
5750878 AGCTCTTACGAGCTTCTGTTC
1 AGCTCTTACAAGCTTCTGTTC
* *
5750899 AGCTCTTATAAGCTTCTGTTT
1 AGCTCTTACAAGCTTCTGTTC
5750920 AGCT-TT-CAAGCTTCTGTT
1 AGCTCTTACAAGCTTCTGTT
5750938 GGCATATTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.31
20 2 0.06
21 22 0.63
ACGTcount: A:0.17, C:0.23, G:0.17, T:0.43
Consensus pattern (21 bp):
AGCTCTTACAAGCTTCTGTTC
Found at i:5752467 original size:17 final size:18
Alignment explanation
Indices: 5752441--5752486 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
5752431 TTTTCAACAT
*
5752441 AATCATAATTTAG-CCAA
1 AATCACAATTTAGTCCAA
*
5752458 TATCACAATTTAGTCCAA
1 AATCACAATTTAGTCCAA
5752476 AATCACCAATT
1 AATCA-CAATT
5752487 GTCATTTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 11 0.46
18 8 0.33
19 5 0.21
ACGTcount: A:0.43, C:0.22, G:0.04, T:0.30
Consensus pattern (18 bp):
AATCACAATTTAGTCCAA
Found at i:5754446 original size:31 final size:31
Alignment explanation
Indices: 5754408--5754466 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
5754398 GGCCTATTTT
5754408 TATTTTAAAAAT-TTTAAAAAATTAAAAAAAG
1 TATTTTAAAAATATTT-AAAAATTAAAAAAAG
*
5754439 TATTTTAAAAATATTTTAAAATTAAAAA
1 TATTTTAAAAATATTTAAAAATTAAAAA
5754467 TTTTTTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 23 0.88
32 3 0.12
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (31 bp):
TATTTTAAAAATATTTAAAAATTAAAAAAAG
Found at i:5754448 original size:11 final size:11
Alignment explanation
Indices: 5754408--5754501 Score: 69
Period size: 11 Copynumber: 8.9 Consensus size: 11
5754398 GGCCTATTTT
5754408 TATTTT-AAAA
1 TATTTTAAAAA
5754418 -ATTTTAAAAA
1 TATTTTAAAAA
**
5754428 -ATTAAAAAAA
1 TATTTTAAAAA
5754438 GTATTTTAAAAA
1 -TATTTTAAAAA
5754450 TATTTT--AAA
1 TATTTTAAAAA
5754459 -A--TTAAAAA
1 TATTTTAAAAA
*
5754467 TTTTTTAAAAAAA
1 TATTTT--AAAAA
5754480 GTATTTTAAAAA
1 -TATTTTAAAAA
5754492 TATTTTAAAA
1 TATTTTAAAA
5754502 TTAAAAAAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 21
0.71 0.06 0.22
Matches are distributed among these distances:
6 2 0.03
8 4 0.06
9 8 0.12
10 12 0.18
11 18 0.27
12 13 0.19
13 5 0.07
14 5 0.07
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.41
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:5754454 original size:42 final size:40
Alignment explanation
Indices: 5754408--5754550 Score: 182
Period size: 39 Copynumber: 3.5 Consensus size: 40
5754398 GGCCTATTTT
5754408 TATTTTAAAAATTTTAAAAAATTAAAAAAAGTATTTTAAAAA
1 TATTTT-AAAA-TTTAAAAAATTAAAAAAAGTATTTTAAAAA
*
5754450 TATTTTAAAA-TTAAAAATTTTTTAAAAAAAGTATTTTAAAAA
1 TATTTTAAAATTTAAAAA---ATTAAAAAAAGTATTTTAAAAA
* * *
5754492 TATTTTAAAATTAAAAAAATT-AAAAAAGTATGTAAAAAA
1 TATTTTAAAATTTAAAAAATTAAAAAAAGTATTTTAAAAA
*
5754531 TATTTTAAAATTAAAAAAAT
1 TATTTTAAAATTTAAAAAAT
5754551 AAATATATTT
Statistics
Matches: 92, Mismatches: 5, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
39 43 0.47
40 2 0.02
41 4 0.04
42 37 0.40
43 6 0.07
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (40 bp):
TATTTTAAAATTTAAAAAATTAAAAAAAGTATTTTAAAAA
Found at i:5754508 original size:17 final size:17
Alignment explanation
Indices: 5754443--5754476 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
5754433 AAAAAGTATT
5754443 TTAAAAATATTTTAAAA
1 TTAAAAATATTTTAAAA
*
5754460 TTAAAAATTTTTTAAAA
1 TTAAAAATATTTTAAAA
5754477 AAAGTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TTAAAAATATTTTAAAA
Found at i:5757848 original size:24 final size:24
Alignment explanation
Indices: 5757730--5758009 Score: 317
Period size: 24 Copynumber: 11.3 Consensus size: 24
5757720 GACGAAGCTC
*
5757730 CTGCTGCCGCTGAAGTTCCAACTG
1 CTGCTGCCGCTGAAGCTCCAACTG
* * *
5757754 CCGTTGATGCTGCTGAAGTTCCAACTG
1 -C--TGCTGCCGCTGAAGCTCCAACTG
*
5757781 CTGCTGCCGCTGAAGCTCCAACAG
1 CTGCTGCCGCTGAAGCTCCAACTG
* *
5757805 ACGTTGATGCTGCTGAAGCTCCAACTG
1 -C--TGCTGCCGCTGAAGCTCCAACTG
*
5757832 CTGCTGCCGCTGAAGCTCCAATTG
1 CTGCTGCCGCTGAAGCTCCAACTG
* *
5757856 CTGCTGCCGCTGATGCTCCAATTG
1 CTGCTGCCGCTGAAGCTCCAACTG
*
5757880 CTGCTGCCGCTGATGCTCCAACTG
1 CTGCTGCCGCTGAAGCTCCAACTG
*
5757904 CTGCTGCCGCTGATGCTCCAACTG
1 CTGCTGCCGCTGAAGCTCCAACTG
*
5757928 CTGCTGCCGCTGATGCTCCAACTG
1 CTGCTGCCGCTGAAGCTCCAACTG
*
5757952 CTGCTGCCTCTGAAGCTCCAACTGATG
1 CTGCTGCCGCTGAAGCTCCAAC---TG
* * *
5757979 CTGCTGCCGTTGTAGTTCCAACTG
1 CTGCTGCCGCTGAAGCTCCAACTG
*
5758003 CCGCTGC
1 CTGCTGC
5758010 TGTTCAAATT
Statistics
Matches: 226, Mismatches: 21, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
24 161 0.71
25 2 0.01
26 2 0.01
27 61 0.27
ACGTcount: A:0.16, C:0.34, G:0.25, T:0.26
Consensus pattern (24 bp):
CTGCTGCCGCTGAAGCTCCAACTG
Found at i:5757896 original size:12 final size:12
Alignment explanation
Indices: 5757857--5757944 Score: 65
Period size: 12 Copynumber: 7.3 Consensus size: 12
5757847 CTCCAATTGC
5757857 TGCTGCCGCTGA
1 TGCTGCCGCTGA
** *
5757869 TGCT-CCAATTGC
1 TGCTGCC-GCTGA
5757881 TGCTGCCGCTGA
1 TGCTGCCGCTGA
* *
5757893 TGCT-CCAACTGC
1 TGCTGCC-GCTGA
5757905 TGCTGCCGCTGA
1 TGCTGCCGCTGA
* *
5757917 TGCT-CCAACTGC
1 TGCTGCC-GCTGA
5757929 TGCTGCCGCTGA
1 TGCTGCCGCTGA
5757941 TGCT
1 TGCT
5757945 CCAACTGCTG
Statistics
Matches: 56, Mismatches: 14, Indels: 12
0.68 0.17 0.15
Matches are distributed among these distances:
11 6 0.11
12 44 0.79
13 6 0.11
ACGTcount: A:0.11, C:0.35, G:0.26, T:0.27
Consensus pattern (12 bp):
TGCTGCCGCTGA
Found at i:5768670 original size:130 final size:130
Alignment explanation
Indices: 5768437--5768826 Score: 771
Period size: 130 Copynumber: 3.0 Consensus size: 130
5768427 AACATTATCA
5768437 CTGAAACTGTTTTACTTCACATGATGTATTTTTCCCTGGATACCTTGATGTGAACCAGATGGCAT
1 CTGAAACTGTTTTACTTCACATGATGTATTTTTCCCTGGATACCTTGATGTGAACCAGATGGCAT
5768502 AATGTATTTTTGCTGAATATAGTACTCATGCTGAAGACGGTATGGATTTTAACTTTCTCCTTGTT
66 AATGTATTTTTGCTGAATATAGTACTCATGCTGAAGACGGTATGGATTTTAACTTTCTCCTTGTT
5768567 CTGAAACTGTTTTACTTCACATGATGTATTTTTCCCTGGATACCTTGATGTGAACCAGATGGCAT
1 CTGAAACTGTTTTACTTCACATGATGTATTTTTCCCTGGATACCTTGATGTGAACCAGATGGCAT
5768632 AATGTATTTTTGCTGAATATAGTACTCATGCTGAAGACGGTATGGATTTTAACTTTCTCCTTGTT
66 AATGTATTTTTGCTGAATATAGTACTCATGCTGAAGACGGTATGGATTTTAACTTTCTCCTTGTT
5768697 CTGAAACTGTTTTACTTCACATGATGTATTTTTCCCTGGATACCTTGATGTGAACCAGATGGCAT
1 CTGAAACTGTTTTACTTCACATGATGTATTTTTCCCTGGATACCTTGATGTGAACCAGATGGCAT
*
5768762 AATGTATTTTTGCTGAATATAGTACTCATGCTGAAGACGGCATGGATTTTAACTTTCTCCTTGTT
66 AATGTATTTTTGCTGAATATAGTACTCATGCTGAAGACGGTATGGATTTTAACTTTCTCCTTGTT
5768827 AAATATGCTC
Statistics
Matches: 259, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
130 259 1.00
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.40
Consensus pattern (130 bp):
CTGAAACTGTTTTACTTCACATGATGTATTTTTCCCTGGATACCTTGATGTGAACCAGATGGCAT
AATGTATTTTTGCTGAATATAGTACTCATGCTGAAGACGGTATGGATTTTAACTTTCTCCTTGTT
Found at i:5770647 original size:27 final size:27
Alignment explanation
Indices: 5770611--5770671 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
5770601 TTAGATTTGA
5770611 GAGCATGTGGCAAAGAGAGTAAATTTT
1 GAGCATGTGGCAAAGAGAGTAAATTTT
*
5770638 GAGCATGTGGCAAAGAGAGTAATTTTT
1 GAGCATGTGGCAAAGAGAGTAAATTTT
5770665 GAGCATG
1 GAGCATG
5770672 CATAGTGAGA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.34, C:0.08, G:0.31, T:0.26
Consensus pattern (27 bp):
GAGCATGTGGCAAAGAGAGTAAATTTT
Found at i:5771411 original size:15 final size:16
Alignment explanation
Indices: 5771365--5771411 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
5771355 AATTCAATCA
*
5771365 AATATTCATTTGTTTTT
1 AATA-TCATTTGTTATT
* *
5771382 AATATAATTTTTTATT
1 AATATCATTTGTTATT
5771398 AATA-CATTTGTTAT
1 AATATCATTTGTTAT
5771412 ACAAAACTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
15 8 0.32
16 13 0.52
17 4 0.16
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (16 bp):
AATATCATTTGTTATT
Found at i:5772693 original size:16 final size:16
Alignment explanation
Indices: 5772672--5772703 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
5772662 TATTTTTTTA
5772672 ATTTATTGTATTATTT
1 ATTTATTGTATTATTT
*
5772688 ATTTATTTTATTATTT
1 ATTTATTGTATTATTT
5772704 TTCACATGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (16 bp):
ATTTATTGTATTATTT
Found at i:5775052 original size:16 final size:16
Alignment explanation
Indices: 5775019--5775052 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
5775009 CACAGATGTT
* *
5775019 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
5775035 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
5775051 AA
1 AA
5775053 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:5777878 original size:21 final size:21
Alignment explanation
Indices: 5777852--5777892 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
5777842 AGACGAGCAA
* *
5777852 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
5777873 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
5777893 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:5779831 original size:16 final size:16
Alignment explanation
Indices: 5779798--5779831 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
5779788 GGAGATTGTT
* *
5779798 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
5779814 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
5779830 AA
1 AA
5779832 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:5783495 original size:33 final size:32
Alignment explanation
Indices: 5783423--5783535 Score: 84
Period size: 33 Copynumber: 3.4 Consensus size: 32
5783413 TATAGTCCAA
* ** *
5783423 CTATGGTCTTACA-CATGCATTGCCATGGCCCTG
1 CTATGGTCTTACATCA-G-AATGCCATAACCCAG
* ** *
5783456 CCATGGTCTTACATTTGTAGTGCCATAACCCAG
1 CTATGGTCTTACATCAG-AATGCCATAACCCAG
* * *
5783489 TTATGGTCTTATCATCAGAATGTCATAGCCCAG
1 CTATGGTCTTA-CATCAGAATGCCATAACCCAG
5783522 CTATGGTCTTACAT
1 CTATGGTCTTACAT
5783536 ATATATATAC
Statistics
Matches: 62, Mismatches: 16, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
32 3 0.05
33 55 0.89
34 4 0.06
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.33
Consensus pattern (32 bp):
CTATGGTCTTACATCAGAATGCCATAACCCAG
Found at i:5783584 original size:102 final size:100
Alignment explanation
Indices: 5783475--5783666 Score: 289
Period size: 102 Copynumber: 1.9 Consensus size: 100
5783465 TACATTTGTA
* *
5783475 GTGCCATAACCCAGTTATGGTCTTATCATCAGAATGTCATAGCCCAGCTATGGTCTTACATATAT
1 GTGCCATAACCCAGTTATGGTCTTATCATCAAAATGCCATAGCCCAGCTATGGTCTTACAT-T-T
5783540 ATATAC-TGT-CATGGTCCAACCATGGTCAACGTTCAAG
64 A-A-ACATGTCCATGGTCCAACCATGGTCAACGTTCAAG
* *
5783577 GTGCCATAACCCAGTTATGGTCTTTTCATTAAAATGCCATAGCCCAGCTATGGTCTTACATTTAA
1 GTGCCATAACCCAGTTATGGTCTTATCATCAAAATGCCATAGCCCAGCTATGGTCTTACATTTAA
*
5783642 ACATTTCCATGGTCCAACCATGGTC
66 ACATGTCCATGGTCCAACCATGGTC
5783667 TTATCCGTCA
Statistics
Matches: 83, Mismatches: 5, Indels: 6
0.88 0.05 0.06
Matches are distributed among these distances:
98 2 0.02
99 3 0.04
100 20 0.24
101 1 0.01
102 57 0.69
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (100 bp):
GTGCCATAACCCAGTTATGGTCTTATCATCAAAATGCCATAGCCCAGCTATGGTCTTACATTTAA
ACATGTCCATGGTCCAACCATGGTCAACGTTCAAG
Found at i:5783642 original size:33 final size:33
Alignment explanation
Indices: 5783443--5783642 Score: 100
Period size: 33 Copynumber: 6.0 Consensus size: 33
5783433 ACACATGCAT
* * * ** *
5783443 TGCCATGGCCCTGCCATGGTCTTACATTTGTAG
1 TGCCATAGCCCAGCTATGGTCTTACATTTAAAA
* * * *
5783476 TGCCATAACCCAGTTATGGTCTTATCA-TCAGAA
1 TGCCATAGCCCAGCTATGGTCTTA-CATTTAAAA
* *
5783509 TGTCATAGCCCAGCTATGGTCTTACATATATATATAC
1 TGCCATAGCCCAGCTATGGTCTTACAT-T-TA-A-AA
* * * * * * * * **
5783546 TGTCATGGTCCAACCATGGTC-AACGTTCAAGG
1 TGCCATAGCCCAGCTATGGTCTTACATTTAAAA
* * *
5783578 TGCCATAACCCAGTTATGGTCTTTTCA-TTAAAA
1 TGCCATAGCCCAGCTATGGTC-TTACATTTAAAA
5783611 TGCCATAGCCCAGCTATGGTCTTACATTTAAA
1 TGCCATAGCCCAGCTATGGTCTTACATTTAAA
5783643 CATTTCCATG
Statistics
Matches: 118, Mismatches: 40, Indels: 18
0.67 0.23 0.10
Matches are distributed among these distances:
32 20 0.17
33 70 0.59
34 5 0.04
35 2 0.02
36 3 0.03
37 18 0.15
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (33 bp):
TGCCATAGCCCAGCTATGGTCTTACATTTAAAA
Found at i:5794428 original size:22 final size:23
Alignment explanation
Indices: 5794400--5794444 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
5794390 ATGCAATCTT
*
5794400 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTATGTAATATTAGA
*
5794422 AGATATGATTTTGTAATATTAGA
1 AGATATGATTATGTAATATTAGA
5794445 GATTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.40, C:0.02, G:0.18, T:0.40
Consensus pattern (23 bp):
AGATATGATTATGTAATATTAGA
Found at i:5794454 original size:22 final size:23
Alignment explanation
Indices: 5794410--5794454 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
5794400 AGATATGATA
* *
5794410 TGTAATCTTAGAAGATATGATTT
1 TGTAATATTAGAAGATATAATTT
*
5794433 TGTAATATTAG-AGATTTAATTT
1 TGTAATATTAGAAGATATAATTT
5794455 GTAGATACCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATATTAGAAGATATAATTT
Found at i:5794640 original size:19 final size:21
Alignment explanation
Indices: 5794616--5794654 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
5794606 ACTGTTTTCT
*
5794616 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
5794635 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
5794655 TTAAAAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:5794883 original size:15 final size:15
Alignment explanation
Indices: 5794859--5794896 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
5794849 GTTTTTAGTC
5794859 TATT-TTATTAATTT
1 TATTATTATTAATTT
* *
5794873 TGTTATTATTATTTT
1 TATTATTATTAATTT
5794888 TATTATTAT
1 TATTATTAT
5794897 ATTATATATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 3 0.15
15 17 0.85
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (15 bp):
TATTATTATTAATTT
Found at i:5794890 original size:12 final size:12
Alignment explanation
Indices: 5794861--5794911 Score: 50
Period size: 12 Copynumber: 4.0 Consensus size: 12
5794851 TTTTAGTCTA
5794861 TTTTATTAATT-T
1 TTTTATT-ATTAT
*
5794873 TGTTATTATTAT
1 TTTTATTATTAT
5794885 TTTTATTATTAT
1 TTTTATTATTAT
5794897 ATTATATATTATTAT
1 -TT-T-TATTATTAT
5794912 ACCTACATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
11 3 0.09
12 18 0.55
13 2 0.06
14 1 0.03
15 9 0.27
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (12 bp):
TTTTATTATTAT
Found at i:5794906 original size:15 final size:13
Alignment explanation
Indices: 5794875--5794912 Score: 51
Period size: 12 Copynumber: 2.8 Consensus size: 13
5794865 ATTAATTTTG
5794875 TTATTATTAT-TT
1 TTATTATTATATT
5794887 TTATTATTATATT
1 TTATTATTATATT
5794900 ATATATTATTATA
1 -T-TATTATTATA
5794913 CCTACATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 10 0.43
13 2 0.09
14 1 0.04
15 10 0.43
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
TTATTATTATATT
Found at i:5799970 original size:25 final size:25
Alignment explanation
Indices: 5799940--5799987 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
5799930 AAGATTACTT
5799940 ATTTGAATTTAATTACAAACAATTA
1 ATTTGAATTTAATTACAAACAATTA
5799965 ATTTGAATTTAATTACAAACAAT
1 ATTTGAATTTAATTACAAACAAT
5799988 CAAATCTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.40
Consensus pattern (25 bp):
ATTTGAATTTAATTACAAACAATTA
Found at i:5801382 original size:29 final size:29
Alignment explanation
Indices: 5801350--5801428 Score: 140
Period size: 29 Copynumber: 2.7 Consensus size: 29
5801340 TTAACAGCAC
*
5801350 TAACAGCAAAATCAAAATCAGAACACCAT
1 TAACAGCAAAATCAAAATCAAAACACCAT
5801379 TAACAGCAAAATCAAAATCAAAACACCAT
1 TAACAGCAAAATCAAAATCAAAACACCAT
5801408 TAACAGCAAAAATCAAAATCA
1 TAACAGC-AAAATCAAAATCA
5801429 CAACCAACAT
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
29 35 0.73
30 13 0.27
ACGTcount: A:0.58, C:0.23, G:0.05, T:0.14
Consensus pattern (29 bp):
TAACAGCAAAATCAAAATCAAAACACCAT
Found at i:5801443 original size:24 final size:23
Alignment explanation
Indices: 5801389--5801443 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 23
5801379 TAACAGCAAA
* **
5801389 ATCAAAATCAAAACACCATTAAC
1 ATCAAAATCAAAACACAACCAAC
*
5801412 AGCAAAAATCAAAATCACAACCAAC
1 ATC-AAAATCAAAA-CACAACCAAC
5801437 ATCAAAA
1 ATCAAAA
5801444 AGCAAAAAAG
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
23 2 0.08
24 14 0.56
25 9 0.36
ACGTcount: A:0.60, C:0.25, G:0.02, T:0.13
Consensus pattern (23 bp):
ATCAAAATCAAAACACAACCAAC
Found at i:5801443 original size:25 final size:24
Alignment explanation
Indices: 5801392--5801450 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
5801382 CAGCAAAATC
* **
5801392 AAAATCAAAACACCATTAACAGCA
1 AAAATCAAAACACAACCAACAGCA
*
5801416 AAAATCAAAATCACAACCAACATCA
1 AAAATCAAAA-CACAACCAACAGCA
*
5801441 AAAAGCAAAA
1 AAAATCAAAA
5801451 AAGGGAGAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 10 0.34
25 19 0.66
ACGTcount: A:0.63, C:0.24, G:0.03, T:0.10
Consensus pattern (24 bp):
AAAATCAAAACACAACCAACAGCA
Found at i:5802947 original size:30 final size:30
Alignment explanation
Indices: 5802913--5802970 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
5802903 TATATTTGTT
*
5802913 GAGTAATTTTATCTCGTATCTTATTAATGA
1 GAGTAATTTAATCTCGTATCTTATTAATGA
5802943 GAGTAATTTAATCTCGTATCTTATTAAT
1 GAGTAATTTAATCTCGTATCTTATTAAT
5802971 AATGGGAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.47
Consensus pattern (30 bp):
GAGTAATTTAATCTCGTATCTTATTAATGA
Found at i:5814483 original size:26 final size:26
Alignment explanation
Indices: 5814442--5814505 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 26
5814432 TAATTAAATT
*
5814442 TAAATCTTATTT-ATTATAATAAAAA
1 TAAATATTATTTAATTATAATAAAAA
* * *
5814467 TAAATATTATTTAATTATTATGAAGA
1 TAAATATTATTTAATTATAATAAAAA
*
5814493 TAAATAATATTTA
1 TAAATATTATTTA
5814506 TCTTAATATT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
25 11 0.33
26 22 0.67
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (26 bp):
TAAATATTATTTAATTATAATAAAAA
Found at i:5814905 original size:31 final size:33
Alignment explanation
Indices: 5814840--5814910 Score: 92
Period size: 33 Copynumber: 2.2 Consensus size: 33
5814830 ATTCTAAATT
* *
5814840 ATTAAAATAATAATTTATTTTAATTATACTTAA
1 ATTAAATTAATAATTTATTCTAATTATACTTAA
* *
5814873 ATTAAATTATTAATTT-TTCTATTTA-ACTTAA
1 ATTAAATTAATAATTTATTCTAATTATACTTAA
5814904 ATTAAAT
1 ATTAAAT
5814911 GATAATAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 13 0.38
32 7 0.21
33 14 0.41
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (33 bp):
ATTAAATTAATAATTTATTCTAATTATACTTAA
Found at i:5817939 original size:13 final size:13
Alignment explanation
Indices: 5817921--5817974 Score: 72
Period size: 13 Copynumber: 4.2 Consensus size: 13
5817911 TTCTTCATTA
5817921 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
*
5817934 CTTTTGAAAAATG
1 CTTTTGAAAAGTG
* *
5817947 CTATGGAAAAGTG
1 CTTTTGAAAAGTG
*
5817960 CTTTTGAGAAGTG
1 CTTTTGAAAAGTG
5817973 CT
1 CT
5817975 GTAACACCCC
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.35
Consensus pattern (13 bp):
CTTTTGAAAAGTG
Found at i:5818684 original size:51 final size:51
Alignment explanation
Indices: 5818616--5818722 Score: 169
Period size: 51 Copynumber: 2.1 Consensus size: 51
5818606 ATCACATTTA
* *
5818616 TCACTTGTCACTGATCAGATTAGTGTAGCTAAAGCTACCACTCATCACTTG
1 TCACTTGTCACTGATCAGATAAATGTAGCTAAAGCTACCACTCATCACTTG
* * *
5818667 TCACTTGTCACTGATCAGATAAATGTAGCTAAAGCTATCACTTATTACTTG
1 TCACTTGTCACTGATCAGATAAATGTAGCTAAAGCTACCACTCATCACTTG
5818718 TCACT
1 TCACT
5818723 AGACCTGTCC
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (51 bp):
TCACTTGTCACTGATCAGATAAATGTAGCTAAAGCTACCACTCATCACTTG
Found at i:5835651 original size:14 final size:14
Alignment explanation
Indices: 5835632--5835660 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
5835622 TACAATATAT
5835632 ATAAGAATTATACG
1 ATAAGAATTATACG
5835646 ATAAGAATTATACG
1 ATAAGAATTATACG
5835660 A
1 A
5835661 ATCCATCTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.28
Consensus pattern (14 bp):
ATAAGAATTATACG
Found at i:5839868 original size:14 final size:14
Alignment explanation
Indices: 5839851--5839896 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
5839841 ACCGAACTCA
* *
5839851 AAACCCTAAATCTT
1 AAACACTAAATCCT
* *
5839865 AAACATTAAACCCT
1 AAACACTAAATCCT
5839879 AAACACTAAATCCT
1 AAACACTAAATCCT
5839893 AAAC
1 AAAC
5839897 TATGAACTCT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.50, C:0.28, G:0.00, T:0.22
Consensus pattern (14 bp):
AAACACTAAATCCT
Found at i:5850864 original size:81 final size:81
Alignment explanation
Indices: 5850724--5850884 Score: 277
Period size: 81 Copynumber: 2.0 Consensus size: 81
5850714 CTAAACTGAG
*
5850724 TGAATTAGAAAATAACATGATATAGTTAATGCATGATATGTGATATGAATATAGAATGAACCATG
1 TGAAGTAGAAAATAACATGATATAGTTAATGCATGATATGTGATATGAATATAGAATGAACCATG
5850789 CTATGTGATATTGGGA
66 CTATGTGATATTGGGA
** * *
5850805 TGAAGTAGAAAATAGTATGATGTAGTTGATGCATGATATGTGATATGAATATAGAATGAACCATG
1 TGAAGTAGAAAATAACATGATATAGTTAATGCATGATATGTGATATGAATATAGAATGAACCATG
5850870 CTATGTGATATTGGG
66 CTATGTGATATTGGG
5850885 GATATATGAA
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
81 75 1.00
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.32
Consensus pattern (81 bp):
TGAAGTAGAAAATAACATGATATAGTTAATGCATGATATGTGATATGAATATAGAATGAACCATG
CTATGTGATATTGGGA
Found at i:5855241 original size:20 final size:21
Alignment explanation
Indices: 5855203--5855255 Score: 90
Period size: 20 Copynumber: 2.6 Consensus size: 21
5855193 ACAGCGGTGA
*
5855203 CGGTGAGATTAGTTACTGTAG
1 CGGTGAGATTAGGTACTGTAG
5855224 CGGTGAGATT-GGTACTGTAG
1 CGGTGAGATTAGGTACTGTAG
5855244 CGGTGAGATTAG
1 CGGTGAGATTAG
5855256 AAACAATGGT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 19 0.63
21 11 0.37
ACGTcount: A:0.23, C:0.09, G:0.38, T:0.30
Consensus pattern (21 bp):
CGGTGAGATTAGGTACTGTAG
Found at i:5857487 original size:30 final size:31
Alignment explanation
Indices: 5857441--5857501 Score: 115
Period size: 30 Copynumber: 2.0 Consensus size: 31
5857431 ATTTCTTATA
5857441 CCAATATTTCGATACCCATATCTTTGACTTT
1 CCAATATTTCGATACCCATATCTTTGACTTT
5857472 CCAATATTT-GATACCCATATCTTTGACTTT
1 CCAATATTTCGATACCCATATCTTTGACTTT
5857502 TCATAATATG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 21 0.70
31 9 0.30
ACGTcount: A:0.26, C:0.25, G:0.07, T:0.43
Consensus pattern (31 bp):
CCAATATTTCGATACCCATATCTTTGACTTT
Found at i:5857496 original size:15 final size:15
Alignment explanation
Indices: 5857438--5857497 Score: 52
Period size: 15 Copynumber: 4.1 Consensus size: 15
5857428 CAAATTTCTT
* *
5857438 ATACCAATAT-TTCG
1 ATACCCATATCTTTG
5857452 ATACCCATATCTTTG
1 ATACCCATATCTTTG
** *
5857467 ACTTTCCA-ATATTTG
1 A-TACCCATATCTTTG
5857482 ATACCCATATCTTTG
1 ATACCCATATCTTTG
5857497 A
1 A
5857498 CTTTTCATAA
Statistics
Matches: 35, Mismatches: 8, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
14 13 0.37
15 18 0.51
16 4 0.11
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (15 bp):
ATACCCATATCTTTG
Found at i:5860092 original size:8 final size:8
Alignment explanation
Indices: 5860089--5860114 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
5860079 TATATTGTTA
5860089 TATTATAT
1 TATTATAT
5860097 TATTATAT
1 TATTATAT
5860105 TATTATAT
1 TATTATAT
5860113 TA
1 TA
5860115 ATAAAACAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATTATAT
Found at i:5861096 original size:25 final size:25
Alignment explanation
Indices: 5861062--5861221 Score: 190
Period size: 25 Copynumber: 6.6 Consensus size: 25
5861052 ACTTTAACGC
5861062 GCTCTCTGATTATTAGCACATCAGT
1 GCTCTCTGATTATTAGCACATCAGT
* *
5861087 GCTCTTTGATTATTGGCACATCAGT
1 GCTCTCTGATTATTAGCACATCAGT
*
5861112 GCTCTCTGATTATTAGCACGTCAGT
1 GCTCTCTGATTATTAGCACATCAGT
* *
5861137 GCTCTCTGATTACTAGCACGTCAGT
1 GCTCTCTGATTATTAGCACATCAGT
* *
5861162 GCTCTCCG--T-TTAGCACATCTGT
1 GCTCTCTGATTATTAGCACATCAGT
*
5861184 GCTCTCTG--TA-TAGCACTTCAGT
1 GCTCTCTGATTATTAGCACATCAGT
5861206 GCTCTCTG-TTCATTAG
1 GCTCTCTGATT-ATTAG
5861222 TGCATAACAA
Statistics
Matches: 118, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
22 36 0.31
23 2 0.02
24 1 0.01
25 79 0.67
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.37
Consensus pattern (25 bp):
GCTCTCTGATTATTAGCACATCAGT
Found at i:5864395 original size:30 final size:31
Alignment explanation
Indices: 5864345--5864404 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
5864335 TTTCTTATGC
5864345 CAATATTTCGATACCCATATTTTTAACTTTT
1 CAATATTTCGATACCCATATTTTTAACTTTT
* *
5864376 CAATATTT-GATACCTATATTTTTTACTTT
1 CAATATTTCGATACCCATATTTTTAACTTT
5864405 CCATAATATG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 19 0.70
31 8 0.30
ACGTcount: A:0.28, C:0.17, G:0.03, T:0.52
Consensus pattern (31 bp):
CAATATTTCGATACCCATATTTTTAACTTTT
Found at i:5877632 original size:19 final size:20
Alignment explanation
Indices: 5877608--5877645 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
5877598 TGAAGTTATG
5877608 AAATTAAAA-AAAATATTCC
1 AAATTAAAATAAAATATTCC
*
5877627 AAATTAAAATAAAGTATTC
1 AAATTAAAATAAAATATTC
5877646 AATTTCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.61, C:0.08, G:0.03, T:0.29
Consensus pattern (20 bp):
AAATTAAAATAAAATATTCC
Found at i:5885207 original size:19 final size:20
Alignment explanation
Indices: 5885183--5885221 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
5885173 AGTATAAACT
5885183 TATATAAAATTA-AAATTAA
1 TATATAAAATTACAAATTAA
*
5885202 TATATATAATTACAAATTAA
1 TATATAAAATTACAAATTAA
5885222 ACCTAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (20 bp):
TATATAAAATTACAAATTAA
Found at i:5885821 original size:17 final size:19
Alignment explanation
Indices: 5885789--5885823 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
5885779 TTTTGCTCTG
5885789 TTTGTTGATTCAATGTGTT
1 TTTGTTGATTCAATGTGTT
5885808 TTTGTT-ATTC-ATGTGT
1 TTTGTTGATTCAATGTGT
5885824 CTTCTTTGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 4 0.25
19 6 0.38
ACGTcount: A:0.14, C:0.06, G:0.20, T:0.60
Consensus pattern (19 bp):
TTTGTTGATTCAATGTGTT
Found at i:5897728 original size:14 final size:14
Alignment explanation
Indices: 5897703--5897735 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
5897693 TCAAATCAGC
5897703 TTTAAAACT-AAAA
1 TTTAAAACTAAAAA
5897716 TTTAAATACTAAAAA
1 TTTAAA-ACTAAAAA
5897731 TTTAA
1 TTTAA
5897736 CACAATAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.33
14 3 0.17
15 9 0.50
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (14 bp):
TTTAAAACTAAAAA
Found at i:5897868 original size:20 final size:22
Alignment explanation
Indices: 5897836--5897877 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
5897826 AATGTTATTT
5897836 TAACATGAAATTTG-ATTATAA
1 TAACATGAAATTTGAATTATAA
5897857 TAACAT-AAATTTGAATTATAA
1 TAACATGAAATTTGAATTATAA
5897878 AATTATTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.50, C:0.05, G:0.07, T:0.38
Consensus pattern (22 bp):
TAACATGAAATTTGAATTATAA
Found at i:5899530 original size:21 final size:21
Alignment explanation
Indices: 5899494--5899567 Score: 62
Period size: 21 Copynumber: 3.6 Consensus size: 21
5899484 ACAAGTGCTA
* *
5899494 AACAGAAACCCATAAGGGTTG
1 AACAGAAGCTCATAAGGGTTG
* * *
5899515 AACGGAAGCTCATAAGAGCTG
1 AACAGAAGCTCATAAGGGTTG
*
5899536 AACAGAA-CCCATAAGGGTT-
1 AACAGAAGCTCATAAGGGTTG
*
5899555 AAGCTGAAGCTCA
1 AA-CAGAAGCTCA
5899568 AAAGAGCTAA
Statistics
Matches: 40, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
19 2 0.05
20 13 0.32
21 25 0.62
ACGTcount: A:0.41, C:0.20, G:0.24, T:0.15
Consensus pattern (21 bp):
AACAGAAGCTCATAAGGGTTG
Found at i:5899552 original size:41 final size:42
Alignment explanation
Indices: 5899490--5899598 Score: 152
Period size: 41 Copynumber: 2.6 Consensus size: 42
5899480 GCACACAAGT
*
5899490 GCTAAACAGAAACCCATAAGGGTTGAA-CGGAAGCTCATAAGA
1 GCTAAACAGAAACCCATAAGGGTT-AAGCGGAAGCTCAAAAGA
* *
5899532 GCTGAACAG-AACCCATAAGGGTTAAGCTGAAGCTCAAAAGA
1 GCTAAACAGAAACCCATAAGGGTTAAGCGGAAGCTCAAAAGA
5899573 GCTAAACAGAAACCCA-ATAGGGTTAA
1 GCTAAACAGAAACCCATA-AGGGTTAA
5899599 ACTAAAACTC
Statistics
Matches: 60, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
40 2 0.03
41 36 0.60
42 22 0.37
ACGTcount: A:0.43, C:0.19, G:0.23, T:0.15
Consensus pattern (42 bp):
GCTAAACAGAAACCCATAAGGGTTAAGCGGAAGCTCAAAAGA
Found at i:5903296 original size:25 final size:24
Alignment explanation
Indices: 5903251--5903298 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 24
5903241 TTAATATTAT
*
5903251 ATATTATATATTTATAAGCCCAAC
1 ATATTATATATATATAAGCCCAAC
5903275 ATATTATATTATATATAAGCCCAA
1 ATATTATA-TATATATAAGCCCAA
5903299 TGCATGACCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.44, C:0.15, G:0.04, T:0.38
Consensus pattern (24 bp):
ATATTATATATATATAAGCCCAAC
Found at i:5907290 original size:23 final size:23
Alignment explanation
Indices: 5907262--5907307 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
5907252 CTTTCAATTT
*
5907262 CTTATTTTAGTAAGTGTTATCTC
1 CTTATTTTACTAAGTGTTATCTC
5907285 CTTATTTTACTAAGTGTTATCTC
1 CTTATTTTACTAAGTGTTATCTC
5907308 GATTGACATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.22, C:0.15, G:0.11, T:0.52
Consensus pattern (23 bp):
CTTATTTTACTAAGTGTTATCTC
Found at i:5921596 original size:16 final size:16
Alignment explanation
Indices: 5921560--5921590 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
5921550 AAATTAATAT
5921560 AAAATAACATAAATTC
1 AAAATAACATAAATTC
*
5921576 AAAATAACTTAAATT
1 AAAATAACATAAATT
5921591 TGAAATGATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.10, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAATAACATAAATTC
Found at i:5921813 original size:17 final size:16
Alignment explanation
Indices: 5921776--5921825 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
5921766 AAAATAATAT
*
5921776 AAATTTAAAGTGATCA
1 AAATTTAAAATGATCA
*
5921792 AAATTTAAAATTATCTA
1 AAATTTAAAATGATC-A
*
5921809 AAA-TTATAATGAT-A
1 AAATTTAAAATGATCA
5921823 AAA
1 AAA
5921826 ACATTCAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 4 0.14
16 21 0.72
17 4 0.14
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (16 bp):
AAATTTAAAATGATCA
Found at i:5928967 original size:13 final size:13
Alignment explanation
Indices: 5928951--5928976 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
5928941 AATCGGATAT
5928951 AGCAATCTCTTAA
1 AGCAATCTCTTAA
5928964 AGCAATCTCTTAA
1 AGCAATCTCTTAA
5928977 TCCTGTAGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (13 bp):
AGCAATCTCTTAA
Found at i:5933010 original size:23 final size:22
Alignment explanation
Indices: 5932969--5933024 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
5932959 GAAAGGTATC
* *
5932969 TACAAATCA-AATCTCTAAGAT
1 TACAAATCATATTTTCTAAGAT
5932990 TACGAAATCATATTTTCTAAGAT
1 TAC-AAATCATATTTTCTAAGAT
*
5933013 TACATATCATAT
1 TACAAATCATAT
5933025 CTGCGATTGC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.10
22 14 0.47
23 13 0.43
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATTTTCTAAGAT
Found at i:5933024 original size:22 final size:23
Alignment explanation
Indices: 5932982--5933024 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
5932972 AAATCAAATC
5932982 TCTAAGATTACGAAATCATATTT
1 TCTAAGATTACGAAATCATATTT
*
5933005 TCTAAGATTAC-ATATCATAT
1 TCTAAGATTACGAAATCATAT
5933025 CTGCGATTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.40
Consensus pattern (23 bp):
TCTAAGATTACGAAATCATATTT
Found at i:5938101 original size:22 final size:23
Alignment explanation
Indices: 5938074--5938118 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
5938064 AGGTATCTAC
5938074 AAATCA-AATCTCTAAGATTACA
1 AAATCATAATCTCTAAGATTACA
* *
5938096 AAATCATATTTTCTAAGATTACA
1 AAATCATAATCTCTAAGATTACA
5938119 TATCATATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.47, C:0.16, G:0.04, T:0.33
Consensus pattern (23 bp):
AAATCATAATCTCTAAGATTACA
Found at i:5938112 original size:23 final size:22
Alignment explanation
Indices: 5938071--5938126 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
5938061 GAAAGGTATC
* *
5938071 TACAAATCA-AATCTCTAAGAT
1 TACAAATCATATTTTCTAAGAT
5938092 TACAAAATCATATTTTCTAAGAT
1 TAC-AAATCATATTTTCTAAGAT
*
5938115 TACATATCATAT
1 TACAAATCATAT
5938127 CTGCGATTGC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.10
22 14 0.47
23 13 0.43
ACGTcount: A:0.45, C:0.16, G:0.04, T:0.36
Consensus pattern (22 bp):
TACAAATCATATTTTCTAAGAT
Found at i:5938126 original size:22 final size:23
Alignment explanation
Indices: 5938084--5938126 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
5938074 AAATCAAATC
5938084 TCTAAGATTACAAAATCATATTT
1 TCTAAGATTACAAAATCATATTT
*
5938107 TCTAAGATTAC-ATATCATAT
1 TCTAAGATTACAAAATCATAT
5938127 CTGCGATTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.42, C:0.14, G:0.05, T:0.40
Consensus pattern (23 bp):
TCTAAGATTACAAAATCATATTT
Found at i:5951577 original size:16 final size:15
Alignment explanation
Indices: 5951522--5951578 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
5951512 AAAAGATATT
* *
5951522 TTTTAAATCAATAGA
1 TTTTAATTCAATTGA
* *
5951537 TTTTAACTCAATTAA
1 TTTTAATTCAATTGA
*
5951552 TTTAATATTCAATTTGA
1 TTTTA-ATTCAA-TTGA
5951569 TTTTAATTCA
1 TTTTAATTCA
5951579 GTGTTTTAGA
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
15 16 0.48
16 10 0.30
17 7 0.21
ACGTcount: A:0.39, C:0.09, G:0.04, T:0.49
Consensus pattern (15 bp):
TTTTAATTCAATTGA
Found at i:5953466 original size:21 final size:20
Alignment explanation
Indices: 5953415--5953466 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
5953405 TTTTTATCAT
5953415 AATTTTATTATAATATTTTGA
1 AATTTT-TTATAATATTTTGA
*
5953436 AATGTATTTATATATATTTTTG-
1 AAT-TTTTTATA-ATA-TTTTGA
5953458 AATTTTTTA
1 AATTTTTTA
5953467 AAATTATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
21 13 0.50
22 8 0.31
23 5 0.19
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.60
Consensus pattern (20 bp):
AATTTTTTATAATATTTTGA
Found at i:5953907 original size:17 final size:19
Alignment explanation
Indices: 5953869--5953915 Score: 62
Period size: 17 Copynumber: 2.5 Consensus size: 19
5953859 TATTTTTTTA
5953869 AAAAATATTATAATAAATTT
1 AAAAATA-TATAATAAATTT
5953889 AAAAATATATAA-AAA-TT
1 AAAAATATATAATAAATTT
*
5953906 AAAAAAATAT
1 AAAAATATAT
5953916 TGTTGACAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 11 0.42
18 3 0.12
19 5 0.19
20 7 0.27
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
AAAAATATATAATAAATTT
Found at i:5953990 original size:17 final size:15
Alignment explanation
Indices: 5953962--5954001 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
5953952 GACATAAAAT
5953962 AAATAAATAATTTAA
1 AAATAAATAATTTAA
5953977 AAATATAATAAATTT-A
1 AAATA-AAT-AATTTAA
5953993 AAATAAATA
1 AAATAAATA
5954002 TTAAATTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 1 0.04
15 8 0.35
16 9 0.39
17 5 0.22
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AAATAAATAATTTAA
Found at i:5954010 original size:17 final size:17
Alignment explanation
Indices: 5953956--5954010 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
5953946 TCACAAGACA
*
5953956 TAAAATAAATAAATAATT
1 TAAAATAAAT-AATAAAT
*
5953974 TAAAA-ATATAATAAATT
1 TAAAATAAATAATAAA-T
*
5953991 TAAAATAAATATTAAAT
1 TAAAATAAATAATAAAT
5954008 TAA
1 TAA
5954011 TAAAATTATA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
16 5 0.16
17 13 0.42
18 13 0.42
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TAAAATAAATAATAAAT
Found at i:5954498 original size:19 final size:19
Alignment explanation
Indices: 5954476--5954517 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
5954466 TTATTTAATA
5954476 TTAATACAATTATATTTAT
1 TTAATACAATTATATTTAT
** *
5954495 TTAATATTATTATATTTTT
1 TTAATACAATTATATTTAT
5954514 TTAA
1 TTAA
5954518 AATATTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (19 bp):
TTAATACAATTATATTTAT
Found at i:5954569 original size:21 final size:21
Alignment explanation
Indices: 5954484--5954569 Score: 88
Period size: 21 Copynumber: 4.1 Consensus size: 21
5954474 TATTAATACA
5954484 ATTATATTTATTT--AATA-TT
1 ATTATATTT-TTTAAAATATTT
5954503 ATTATATTTTTTTAAAATATTTT
1 ATTATA-TTTTTTAAAATA-TTT
* * * *
5954526 TTTTTATTTTTTAAATTAATT
1 ATTATATTTTTTAAAATATTT
5954547 ATTATATTTTTTAAAATATTT
1 ATTATATTTTTTAAAATATTT
5954568 AT
1 AT
5954570 GTATTTATAT
Statistics
Matches: 54, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
19 9 0.17
20 3 0.06
21 25 0.46
22 11 0.20
23 6 0.11
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (21 bp):
ATTATATTTTTTAAAATATTT
Found at i:5974583 original size:14 final size:14
Alignment explanation
Indices: 5974564--5974591 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
5974554 GGAACAATCA
5974564 CCCCCTAAATCACC
1 CCCCCTAAATCACC
5974578 CCCCCTAAATCACC
1 CCCCCTAAATCACC
5974592 TACGTTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.57, G:0.00, T:0.14
Consensus pattern (14 bp):
CCCCCTAAATCACC
Found at i:5983516 original size:21 final size:21
Alignment explanation
Indices: 5983488--5983536 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 21
5983478 AATTAAGCTT
5983488 AATA-TTA-TTATATTTTTAA
1 AATATTTATTTATATTTTTAA
* *
5983507 TAATTTTTATTTTTATTTTTAA
1 -AATATTTATTTATATTTTTAA
5983529 AATATTTA
1 AATATTTA
5983537 AAATATTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 3 0.12
21 10 0.42
22 11 0.46
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (21 bp):
AATATTTATTTATATTTTTAA
Found at i:5983753 original size:15 final size:15
Alignment explanation
Indices: 5983733--5983789 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 15
5983723 CATTCAATTT
5983733 AATATTTTAATAATA
1 AATATTTTAATAATA
*
5983748 AATATTCTCTACAATTATA
1 AATATT-T-T--AATAATA
*
5983767 AATATATTAATAATA
1 AATATTTTAATAATA
5983782 AATATTTT
1 AATATTTT
5983790 GTAGTATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 19 0.56
16 1 0.03
17 2 0.06
18 1 0.03
19 11 0.32
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:5988755 original size:27 final size:25
Alignment explanation
Indices: 5988695--5988755 Score: 59
Period size: 27 Copynumber: 2.3 Consensus size: 25
5988685 GAGAATGAAA
*
5988695 AAAAAAAGAAAAAAAAAGTTAAAAG
1 AAAAAAAGAAAAAAAAAGTCAAAAG
* *
5988720 AACATAAAAGAAAAAAAATTGCTCAAAAT
1 AA-A-AAAAGAAAAAAAA-AG-TCAAAAG
5988749 AAAAAAA
1 AAAAAAA
5988756 AATACGGGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
25 2 0.07
26 1 0.03
27 17 0.59
28 2 0.07
29 7 0.24
ACGTcount: A:0.75, C:0.05, G:0.08, T:0.11
Consensus pattern (25 bp):
AAAAAAAGAAAAAAAAAGTCAAAAG
Found at i:5988973 original size:49 final size:50
Alignment explanation
Indices: 5988916--5989029 Score: 189
Period size: 49 Copynumber: 2.3 Consensus size: 50
5988906 TAGTTTACTC
5988916 TTATTAGTATTGGTTACAACATATTTGTCATGAAA-TTTTTAGCTAATTA
1 TTATTAGTATTGGTTACAACATATTTGTCATGAAAGTTTTTAGCTAATTA
*
5988965 TTATTAGTATTGGTTACAACATATTTGTCTTGAAAGTTTTTAGCTAATTA
1 TTATTAGTATTGGTTACAACATATTTGTCATGAAAGTTTTTAGCTAATTA
*
5989015 TTA--AGTATTTGTTAC
1 TTATTAGTATTGGTTAC
5989030 TTAACTCAGA
Statistics
Matches: 62, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
48 11 0.18
49 34 0.55
50 17 0.27
ACGTcount: A:0.31, C:0.08, G:0.13, T:0.48
Consensus pattern (50 bp):
TTATTAGTATTGGTTACAACATATTTGTCATGAAAGTTTTTAGCTAATTA
Found at i:5989718 original size:21 final size:21
Alignment explanation
Indices: 5989694--5989733 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
5989684 CCATATTAAA
5989694 TATATATTTGATTAAAAATTG
1 TATATATTTGATTAAAAATTG
5989715 TATATATTTGATTAAAAAT
1 TATATATTTGATTAAAAAT
5989734 AAAAATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.47
Consensus pattern (21 bp):
TATATATTTGATTAAAAATTG
Found at i:5995021 original size:3 final size:3
Alignment explanation
Indices: 5995007--5995040 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
5994997 ATTACCAATC
*
5995007 TCA TCA TTA TCA TCA TCA TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
5995041 TAAAACTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.32, C:0.29, G:0.00, T:0.38
Consensus pattern (3 bp):
TCA
Found at i:5995764 original size:9 final size:10
Alignment explanation
Indices: 5995716--5995774 Score: 55
Period size: 10 Copynumber: 5.5 Consensus size: 10
5995706 AAAAAAATAC
5995716 AAAAATAATT
1 AAAAATAATT
5995726 AAAAATAATCTT
1 AAAAATAA--TT
*
5995738 GAAAAATATTT
1 -AAAAATAATT
*
5995749 ATAAAAAAATT
1 A-AAAATAATT
*
5995760 AAAAATTATT
1 AAAAATAATT
5995770 AAAAA
1 AAAAA
5995775 GTTACTAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
10 21 0.52
11 10 0.25
12 2 0.05
13 7 0.17
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (10 bp):
AAAAATAATT
Found at i:5995833 original size:27 final size:26
Alignment explanation
Indices: 5995789--5995839 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
5995779 CTAAAAATCA
* *
5995789 TTTTTAAAAATGCTAAATTATAATTT
1 TTTTTAAAAATGATAAATGATAATTT
*
5995815 TTTTTAAAAATTATAAAATGATAAT
1 TTTTTAAAAATGAT-AAATGATAAT
5995840 CTTGAGACCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 12 0.57
27 9 0.43
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (26 bp):
TTTTTAAAAATGATAAATGATAATTT
Found at i:6000159 original size:18 final size:18
Alignment explanation
Indices: 6000119--6000162 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
6000109 AATTTTTATG
*
6000119 ATTGGGTTGGGTTAGGTA
1 ATTGGGTTGGGTTAGATA
6000137 ATTGGGTTGGGTT-GAATA
1 ATTGGGTTGGGTTAG-ATA
*
6000155 CTTGGGTT
1 ATTGGGTT
6000163 TGGATTGGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 1 0.04
18 22 0.96
ACGTcount: A:0.16, C:0.02, G:0.41, T:0.41
Consensus pattern (18 bp):
ATTGGGTTGGGTTAGATA
Found at i:6004299 original size:25 final size:25
Alignment explanation
Indices: 6004266--6004335 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 25
6004256 AGATTTTTAT
* *
6004266 ATTATTTATTTATATAAATATATAA
1 ATTAATTATATATATAAATATATAA
* * *
6004291 ATTAATTATAAAGTAT-ATTATTTAA
1 ATTAATTATATA-TATAAATATATAA
6004316 ATTAATTATAT-TATAAATAT
1 ATTAATTATATATATAAATAT
6004336 TATATTATAA
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
23 3 0.08
24 4 0.11
25 26 0.72
26 3 0.08
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (25 bp):
ATTAATTATATATATAAATATATAA
Found at i:6004319 original size:21 final size:21
Alignment explanation
Indices: 6004263--6004315 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
6004253 CTTAGATTTT
*
6004263 TATATTATTTATTTATATAAA
1 TATATTATTTAATTATATAAA
* * *
6004284 TATATAAATTAATTATA-AAG
1 TATATTATTTAATTATATAAA
6004304 TATATTATTTAA
1 TATATTATTTAA
6004316 ATTAATTATA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 12 0.46
21 14 0.54
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (21 bp):
TATATTATTTAATTATATAAA
Found at i:6004339 original size:14 final size:15
Alignment explanation
Indices: 6004291--6004345 Score: 55
Period size: 14 Copynumber: 3.8 Consensus size: 15
6004281 AAATATATAA
6004291 ATTA-ATTATAAAGT
1 ATTATATTATAAAGT
*
6004305 A-TATTATT-TAAATT
1 ATTA-TATTATAAAGT
6004319 AATTATATTATAAA-T
1 -ATTATATTATAAAGT
6004334 ATTATATTATAA
1 ATTATATTATAA
6004346 GAAATAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
13 2 0.06
14 18 0.51
15 9 0.26
16 6 0.17
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (15 bp):
ATTATATTATAAAGT
Found at i:6005361 original size:3 final size:3
Alignment explanation
Indices: 6005347--6005393 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
6005337 GTGAGGTAAA
*
6005347 TAT TAG TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
6005394 AGATGAGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:6009061 original size:8 final size:10
Alignment explanation
Indices: 6009035--6009074 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
6009025 TTTTAAAATA
6009035 AAATCATATTT
1 AAAT-ATATTT
6009046 AAATATATTT
1 AAATATATTT
6009056 AAATATATTT
1 AAATATATTT
*
6009066 ATATATATT
1 AAATATATT
6009075 ACTTACTTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 24 0.86
11 4 0.14
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (10 bp):
AAATATATTT
Found at i:6010422 original size:31 final size:31
Alignment explanation
Indices: 6010348--6010429 Score: 78
Period size: 31 Copynumber: 2.7 Consensus size: 31
6010338 GGAAAGAAAA
** *
6010348 AAAAACCTT--AATAACCCAATCACTTAAAT
1 AAAAACCTTCAAATAAATCAATAACTTAAAT
*
6010377 AAAAACCTTCAAATAATTCAATAACTTAAAT
1 AAAAACCTTCAAATAAATCAATAACTTAAAT
* ** *
6010408 GAAAATTTTTAAATAAATCAAT
1 AAAAACCTTCAAATAAATCAAT
6010430 GATCATTTTG
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
29 9 0.21
31 34 0.79
ACGTcount: A:0.54, C:0.16, G:0.01, T:0.29
Consensus pattern (31 bp):
AAAAACCTTCAAATAAATCAATAACTTAAAT
Found at i:6012802 original size:151 final size:151
Alignment explanation
Indices: 6012528--6012828 Score: 584
Period size: 151 Copynumber: 2.0 Consensus size: 151
6012518 CTTTTCTGAT
*
6012528 CATTACCATCTGCAGTTTGTTTCATGTCAGCTACATAAATAGGGAAGTTCCGATACTCTTATACT
1 CATTACCATCTGCAGTTTGTTTAATGTCAGCTACATAAATAGGGAAGTTCCGATACTCTTATACT
6012593 AATATCCAAAATCCACAAAAAGAAATGAGTTTTCCTTTTTGGCATATCTCATACATTCAATGTCC
66 AATATCCAAAATCCACAAAAAGAAATGAGTTTTCCTTTTTGGCATATCTCATACATTCAATGTCC
*
6012658 GAGTTTTGGAAGAATACAAAC
131 AAGTTTTGGAAGAATACAAAC
6012679 CATTACCATCTGCAGTTTGTTTAATGTCAGCTACATAAATAGGGAAGTTCCGATACTCTTATACT
1 CATTACCATCTGCAGTTTGTTTAATGTCAGCTACATAAATAGGGAAGTTCCGATACTCTTATACT
6012744 AATATCCAAAATCCACAAAAAGAAATGAGTTTTCCTTTTTGGCATATCTCATACATTCAATGTCC
66 AATATCCAAAATCCACAAAAAGAAATGAGTTTTCCTTTTTGGCATATCTCATACATTCAATGTCC
6012809 AAGTTTTGGAAGAATACAAA
131 AAGTTTTGGAAGAATACAAA
6012829 GAACATAAAC
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
151 148 1.00
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.33
Consensus pattern (151 bp):
CATTACCATCTGCAGTTTGTTTAATGTCAGCTACATAAATAGGGAAGTTCCGATACTCTTATACT
AATATCCAAAATCCACAAAAAGAAATGAGTTTTCCTTTTTGGCATATCTCATACATTCAATGTCC
AAGTTTTGGAAGAATACAAAC
Done.