Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 151 of 240
Found at i:47467578 original size:85 final size:85
Alignment explanation
Indices: 47467479--47467684 Score: 267
Period size: 85 Copynumber: 2.4 Consensus size: 85
47467469 TTTTATAAAT
*
47467479 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTAT-TCCCAC-AACGCCGCTAAAGACCAAGA
1 AAACGCCGCTAAAGA-CAAGACCTTTAGCGGCGCT-TGTCCCACAAACGCCACTAAAGACCAAGA
* *
47467542 CCTTTAGCGGCTA-TATTCCCAC
64 CCTTTAGCGAC-AGTATTCACAC
* *
47467564 AAACGCCGCTAAAGAGCAAGACCTTTAGCAGCGCTTGTCCCACAAACGCCACTAAAGACCATGAC
1 AAACGCCGCTAAAGA-CAAGACCTTTAGCGGCGCTTGTCCCACAAACGCCACTAAAGACCAAGAC
*
47467629 CTTTAGCGACAGTTTTCACAC
65 CTTTAGCGACAGTATTCACAC
* *
47467650 AAGCGCCGCTATAGA-ATAGACCTTTAGCGGCGCTT
1 AAACGCCGCTAAAGACA-AGACCTTTAGCGGCGCTT
47467685 TTCTGAAAAC
Statistics
Matches: 107, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
84 2 0.02
85 57 0.53
86 48 0.45
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.19
Consensus pattern (85 bp):
AAACGCCGCTAAAGACAAGACCTTTAGCGGCGCTTGTCCCACAAACGCCACTAAAGACCAAGACC
TTTAGCGACAGTATTCACAC
Found at i:47469561 original size:10 final size:10
Alignment explanation
Indices: 47469546--47469576 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
47469536 CTAATAATGT
47469546 AAGTTAAGCA
1 AAGTTAAGCA
47469556 AAGTTAAGCA
1 AAGTTAAGCA
*
47469566 AAGTCAAGCA
1 AAGTTAAGCA
47469576 A
1 A
47469577 GTCCACCACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.52, C:0.13, G:0.19, T:0.16
Consensus pattern (10 bp):
AAGTTAAGCA
Found at i:47470264 original size:12 final size:12
Alignment explanation
Indices: 47470247--47470285 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
47470237 ATTATAAAAG
47470247 AGTCTACAAACC
1 AGTCTACAAACC
*
47470259 AGTCTACAAACT
1 AGTCTACAAACC
*
47470271 AGTCTACAATCC
1 AGTCTACAAACC
47470283 AGT
1 AGT
47470286 TTAAGCAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.38, C:0.28, G:0.10, T:0.23
Consensus pattern (12 bp):
AGTCTACAAACC
Found at i:47472162 original size:21 final size:22
Alignment explanation
Indices: 47472136--47472177 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
47472126 ACCTTAAATC
* *
47472136 TCTAACTCTTAAA-CCCTAACA
1 TCTAACCCCTAAACCCCTAACA
47472157 TCTAACCCCTAAACCCCTAAC
1 TCTAACCCCTAAACCCCTAAC
47472178 CCCTAAACCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.36, C:0.40, G:0.00, T:0.24
Consensus pattern (22 bp):
TCTAACCCCTAAACCCCTAACA
Found at i:47472178 original size:15 final size:15
Alignment explanation
Indices: 47472158--47472186 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
47472148 ACCCTAACAT
47472158 CTAACCCCTAAACCC
1 CTAACCCCTAAACCC
47472173 CTAACCCCTAAACC
1 CTAACCCCTAAACC
47472187 TTAAATCCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.52, G:0.00, T:0.14
Consensus pattern (15 bp):
CTAACCCCTAAACCC
Found at i:47472205 original size:21 final size:22
Alignment explanation
Indices: 47472143--47472207 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
47472133 ATCTCTAACT
** *
47472143 CTTAAA-CCCTAACATCTAACC
1 CTTAAACCCCTAACCCCTAAAC
*
47472164 CCTAAACCCCTAACCCCTAAAC
1 CTTAAACCCCTAACCCCTAAAC
* *
47472186 CTTAAATCCC-AACCCTTAAAC
1 CTTAAACCCCTAACCCCTAAAC
47472207 C
1 C
47472208 ATAATCGCTA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
21 16 0.44
22 20 0.56
ACGTcount: A:0.37, C:0.43, G:0.00, T:0.20
Consensus pattern (22 bp):
CTTAAACCCCTAACCCCTAAAC
Found at i:47472237 original size:15 final size:15
Alignment explanation
Indices: 47472202--47472248 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
47472192 TCCCAACCCT
*
47472202 TAAA-CCATAATCGC
1 TAAATCCATAATCCC
47472216 T-AATCCATAATCCC
1 TAAATCCATAATCCC
*
47472230 TAAATCCATACTCCC
1 TAAATCCATAATCCC
47472245 TAAA
1 TAAA
47472249 CCTTAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
13 2 0.07
14 11 0.38
15 16 0.55
ACGTcount: A:0.40, C:0.32, G:0.02, T:0.26
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:47472501 original size:14 final size:15
Alignment explanation
Indices: 47472449--47472506 Score: 73
Period size: 15 Copynumber: 3.9 Consensus size: 15
47472439 CCTAACATGT
*
47472449 CTAACCCCTAAACCC
1 CTAACCCTTAAACCC
*
47472464 CTAACCCTTTAACCC
1 CTAACCCTTAAACCC
* *
47472479 CTAAACCTTAAATCC
1 CTAACCCTTAAACCC
47472494 C-AACCCTTAAACC
1 CTAACCCTTAAACC
47472507 ATAATCCCTA
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
14 10 0.28
15 26 0.72
ACGTcount: A:0.34, C:0.45, G:0.00, T:0.21
Consensus pattern (15 bp):
CTAACCCTTAAACCC
Found at i:47472504 original size:21 final size:20
Alignment explanation
Indices: 47472474--47472514 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
47472464 CTAACCCTTT
*
47472474 AACCCCTAAACCTTAAATCCC
1 AACCCCTAAACCAT-AATCCC
*
47472495 AACCCTTAAACCATAATCCC
1 AACCCCTAAACCATAATCCC
47472515 TAAACACATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.39, C:0.41, G:0.00, T:0.20
Consensus pattern (20 bp):
AACCCCTAAACCATAATCCC
Found at i:47472524 original size:15 final size:14
Alignment explanation
Indices: 47472501--47472548 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
47472491 TCCCAACCCT
47472501 TAAACCATAATCCC
1 TAAACCATAATCCC
*
47472515 TAAACACATACTCCC
1 TAAAC-CATAATCCC
* * *
47472530 TAAACTAAAAACCC
1 TAAACCATAATCCC
47472544 TAAAC
1 TAAAC
47472549 TATAGTGATA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
14 15 0.54
15 13 0.46
ACGTcount: A:0.48, C:0.33, G:0.00, T:0.19
Consensus pattern (14 bp):
TAAACCATAATCCC
Found at i:47472879 original size:41 final size:41
Alignment explanation
Indices: 47472821--47472924 Score: 138
Period size: 41 Copynumber: 2.5 Consensus size: 41
47472811 TAAAATGTTT
* * * *
47472821 TTAGCGGCGCTTGTTCAAAACCGCCACTAAAGCA-CTGAGCA
1 TTAGCGGCGCTTCTTCAAAAACGCCACTAAA-CACCAGAACA
* *
47472862 TTAGCGGCGCTTCTTCAAAAACGCCGCTAAATACCAGAACA
1 TTAGCGGCGCTTCTTCAAAAACGCCACTAAACACCAGAACA
47472903 TTAGCGGCGCTTCTTCAAAAAC
1 TTAGCGGCGCTTCTTCAAAAAC
47472925 ACCGCTAATG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
40 1 0.02
41 55 0.98
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (41 bp):
TTAGCGGCGCTTCTTCAAAAACGCCACTAAACACCAGAACA
Found at i:47473066 original size:39 final size:40
Alignment explanation
Indices: 47473013--47473147 Score: 134
Period size: 40 Copynumber: 3.4 Consensus size: 40
47473003 TAGGTTTAGG
* *
47473013 TTTTT-GCGACGTTTTTTGGAATA-CGCCGCTAATGCTCA
1 TTTTTAGCGGCGTTTTTTGGAATAGCGCCGCTAATGCTGA
* * * * *
47473051 TTTTTAGCGGCG-TTTTCGAAAAAGCGCAGCTAATACTTGA
1 TTTTTAGCGGCGTTTTTTGGAATAGCGCCGCTAATGC-TGA
* * *
47473091 TTTTTAGCGGCGTTTTTTAG-ATAGCGCCGTTAATGATTGA
1 TTTTTAGCGGCGTTTTTTGGAATAGCGCCGCTAATG-CTGA
47473131 TTTTTAGCGGCGTTTTT
1 TTTTTAGCGGCGTTTTT
47473148 ATCCAAACGC
Statistics
Matches: 77, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
38 13 0.17
39 15 0.19
40 45 0.58
41 4 0.05
ACGTcount: A:0.20, C:0.16, G:0.23, T:0.41
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTTTGGAATAGCGCCGCTAATGCTGA
Found at i:47473667 original size:24 final size:24
Alignment explanation
Indices: 47473599--47473675 Score: 77
Period size: 24 Copynumber: 3.2 Consensus size: 24
47473589 CTATTCATTA
* * *
47473599 TCTTCATCTTCA-CATTGACCCTTG
1 TCTTCATCTTCATC-CTCACCCTCG
*
47473623 TATTCATCTTCAT-CTCGACCCTCG
1 TCTTCATCTTCATCCTC-ACCCTCG
*
47473647 TCTTCATCTTCATCCTCACCCCCG
1 TCTTCATCTTCATCCTCACCCTCG
47473671 TCTTC
1 TCTTC
47473676 GTCTATGTAC
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
23 1 0.02
24 40 0.91
25 3 0.07
ACGTcount: A:0.14, C:0.40, G:0.06, T:0.39
Consensus pattern (24 bp):
TCTTCATCTTCATCCTCACCCTCG
Found at i:47484483 original size:138 final size:140
Alignment explanation
Indices: 47484216--47484501 Score: 452
Period size: 138 Copynumber: 2.1 Consensus size: 140
47484206 GAGAACACAT
* *
47484216 ATATAATTAAGATATGAATTTGATTCCTAAAAAATATTAATTGTATATATTTTAATGAATTTATT
1 ATATAATTAAGATATGAATTCGATTCATAAAAAATATTAATTGTATATATTTTAATGAATTTATT
* *
47484281 AATATATAAACAGTTATATTAATTAATTTTAGTCAAAATATAAAAGAGATGGAAATTAATATTCT
66 AATATATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCT
* *
47484346 TTTGGATAGA
131 TTTGAAAAGA
* *
47484356 ATATAATTAATATATGAATTCGATTCATACAAAATATTAATTGTATATATTTTACA-GAATTTAT
1 ATATAATTAAGATATGAATTCGATTCATAAAAAATATTAATTGTATATATTTTA-ATGAATTTAT
* *
47484420 T-A-ATATAAATAGTTATATTAATTAATTTCCGTCAAAATATAAAAGACATGGAAATTAATATTC
65 TAATATATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTC
47484483 TTTTGAAAAGA
130 TTTTGAAAAGA
47484494 ATATAATT
1 ATATAATT
47484502 CATTTTTCTA
Statistics
Matches: 135, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
138 74 0.55
139 1 0.01
140 59 0.44
141 1 0.01
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (140 bp):
ATATAATTAAGATATGAATTCGATTCATAAAAAATATTAATTGTATATATTTTAATGAATTTATT
AATATATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCT
TTTGAAAAGA
Found at i:47496747 original size:50 final size:50
Alignment explanation
Indices: 47496675--47496774 Score: 182
Period size: 50 Copynumber: 2.0 Consensus size: 50
47496665 TATAATTTGT
*
47496675 ATGATTTTTCTTATATGGTTTTTGCACGCAAATCAAAATAGAAACAAATG
1 ATGATTTTTCTTATATGGTTTTTACACGCAAATCAAAATAGAAACAAATG
*
47496725 ATGATTTTTCTTATATGGTTTTTACACGTAAATCAAAATAGAAACAAATG
1 ATGATTTTTCTTATATGGTTTTTACACGCAAATCAAAATAGAAACAAATG
47496775 TTACTCATTG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (50 bp):
ATGATTTTTCTTATATGGTTTTTACACGCAAATCAAAATAGAAACAAATG
Found at i:47498435 original size:25 final size:25
Alignment explanation
Indices: 47498401--47498486 Score: 118
Period size: 25 Copynumber: 3.4 Consensus size: 25
47498391 TGACAGATAA
*
47498401 CTGGAAAGCCTTTGTGGTATATTAT
1 CTGGAAAGCCTTTGTGGCATATTAT
* *
47498426 CTGGAAAGCCTTTATGGCATGTTAT
1 CTGGAAAGCCTTTGTGGCATATTAT
* * *
47498451 CTTGAAAGCTTTTGTGACATATTAT
1 CTGGAAAGCCTTTGTGGCATATTAT
47498476 CTGGAAAGCCT
1 CTGGAAAGCCT
47498487 ATATGGCGAA
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 51 1.00
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (25 bp):
CTGGAAAGCCTTTGTGGCATATTAT
Found at i:47501111 original size:125 final size:125
Alignment explanation
Indices: 47500872--47501435 Score: 785
Period size: 126 Copynumber: 4.5 Consensus size: 125
47500862 AAATCAAAGT
* * * * * * * *
47500872 AGGATGCT-TTATCAGAAGGATTTCTGAAGTCGTGCCCACGTGTATGCACTTTTGCTACAGTAGG
1 AGGATGCTATT-TGAGAAGAATTTGTGAAATCGTGCCCTCGTGGACGCGCTTTTGCTACAGTAGG
* * *
47500936 TCCTGGAAAAATAATTTCGAGTTGACGTTTTTGAGCAAATAGTATAAAAAACACTTCAAGC
65 TCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAACGCTTCAAGC
* * * *
47500997 AAGATGCT-TTATGAGAAGAATTTCTGAAATAGTTCCCTCGTGGACGCGCTTTTGCTACAGTAGG
1 AGGATGCTATT-TGAGAAGAATTTGTGAAATCGTGCCCTCGTGGACGCGCTTTTGCTACAGTAGG
* * *
47501061 TCCTGGAAGAAATACTTTCGAGTTGACGTTTGTGAGCAAATAGTTTAAAAAACGCTTTAAGC
65 TCCTGGAA-AAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAACGCTTCAAGC
**
47501123 AGGATGCTATTTGAGAAGAATTTGTGAAATCGCACCCTCGTGGACGCGCTTTTGCTACAGTAGGT
1 AGGATGCTATTTGAGAAGAATTTGTGAAATCGTGCCCTCGTGGACGCGCTTTTGCTACAGTAGGT
* * *
47501188 CTTGGAAGAAATAATTTCTAGTTGACATTTCTGAGCAAATAGTTTAAAAAACGCTTCAAGC
66 CCTGGAA-AAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAACGCTTCAAGC
*
47501249 AGGATGCTATTTGAGAAGAATTTGTGAAATCGTGCCCTCGTAGACGCGCTTTTGCTACAGTAGGT
1 AGGATGCTATTTGAGAAGAATTTGTGAAATCGTGCCCTCGTGGACGCGCTTTTGCTACAGTAGGT
* * * *
47501314 CCTAGAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTAT-AAAAACGCTACTAA-C
66 CCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAACGCTTC-AAGC
* *
47501373 AGGATGGTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
1 AGGATGCTATTTGAGAAGAATTTGTGAAATCGTGCCCTCGTGGACGCGCTTTTGCTACAGTAG
47501436 CATGTTTGGG
Statistics
Matches: 397, Mismatches: 39, Indels: 7
0.90 0.09 0.02
Matches are distributed among these distances:
124 71 0.18
125 97 0.24
126 227 0.57
127 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.30
Consensus pattern (125 bp):
AGGATGCTATTTGAGAAGAATTTGTGAAATCGTGCCCTCGTGGACGCGCTTTTGCTACAGTAGGT
CCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAACGCTTCAAGC
Found at i:47504558 original size:21 final size:21
Alignment explanation
Indices: 47504532--47504654 Score: 138
Period size: 21 Copynumber: 5.8 Consensus size: 21
47504522 TCAAATTATA
47504532 TTTAAGTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
* *
47504553 TTTAAGTTAAGTGTTAAGGTT
1 TTTAAGTTAAGGGTTAGGGTT
* * * *
47504574 TTTTATTTAAAGGTTATGGTT
1 TTTAAGTTAAGGGTTAGGGTT
* *
47504595 TTAAAGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGG-TTAGGGTT
* **
47504617 TTTAATTTAAGGGTTACCGTT
1 TTTAAGTTAAGGGTTAGGGTT
47504638 TTTAAGTTAAGGGTTAG
1 TTTAAGTTAAGGGTTAG
47504655 AGTTAGGGTT
Statistics
Matches: 84, Mismatches: 17, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
21 65 0.77
22 19 0.23
ACGTcount: A:0.26, C:0.02, G:0.25, T:0.47
Consensus pattern (21 bp):
TTTAAGTTAAGGGTTAGGGTT
Found at i:47504632 original size:43 final size:43
Alignment explanation
Indices: 47504532--47504652 Score: 154
Period size: 43 Copynumber: 2.8 Consensus size: 43
47504522 TCAAATTATA
* * *
47504532 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGTG-TTAAGGTT
1 TTTAATTTAAGGGTTACGGTTTTTAAGTTAAGGGTTTAAGGTT
* * * * *
47504574 TTTTATTTAAAGGTTATGGTTTTAAAGTTAAGGGTTTATGGTT
1 TTTAATTTAAGGGTTACGGTTTTTAAGTTAAGGGTTTAAGGTT
*
47504617 TTTAATTTAAGGGTTACCGTTTTTAAGTTAAGGGTT
1 TTTAATTTAAGGGTTACGGTTTTTAAGTTAAGGGTT
47504653 AGAGTTAGGG
Statistics
Matches: 66, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
42 28 0.42
43 38 0.58
ACGTcount: A:0.26, C:0.02, G:0.25, T:0.48
Consensus pattern (43 bp):
TTTAATTTAAGGGTTACGGTTTTTAAGTTAAGGGTTTAAGGTT
Found at i:47506986 original size:51 final size:51
Alignment explanation
Indices: 47506931--47507030 Score: 123
Period size: 51 Copynumber: 2.0 Consensus size: 51
47506921 AATTATTTTA
47506931 AAATAGGGATTTAAGAGAAATTTA-AGAGGAACTTT-AGAGAAAATTGAGATT
1 AAATAGGGATTTAAGAGAAATTTAGA-AGGAA-TTTGAGAGAAAATTGAGATT
* * * * *
47506982 AAATATGTATTTGAGAGAAATTTGGAAGGAATTTGAGAGCAAATTGAGA
1 AAATAGGGATTTAAGAGAAATTTAGAAGGAATTTGAGAGAAAATTGAGA
47507031 GAAAATTTGA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
50 3 0.07
51 38 0.90
52 1 0.02
ACGTcount: A:0.45, C:0.02, G:0.25, T:0.28
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTTAGAAGGAATTTGAGAGAAAATTGAGATT
Found at i:47507004 original size:11 final size:11
Alignment explanation
Indices: 47506990--47507044 Score: 60
Period size: 11 Copynumber: 4.9 Consensus size: 11
47506980 TTAAATATGT
47506990 ATTTGAGAGAA
1 ATTTGAGAGAA
*
47507001 ATTTG-GAAGGA
1 ATTTGAG-AGAA
47507012 ATTTGAGAGCAA
1 ATTTGAGAG-AA
47507024 A-TTGAGAGAAA
1 ATTTGAGAG-AA
47507035 ATTTGAGAGA
1 ATTTGAGAGA
47507045 GGATTAGTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
10 1 0.03
11 26 0.70
12 10 0.27
ACGTcount: A:0.44, C:0.02, G:0.29, T:0.25
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:47512009 original size:17 final size:18
Alignment explanation
Indices: 47511983--47512019 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
47511973 AAAATTCTTT
*
47511983 AAATTTTTAAAACCT-TA
1 AAATTCTTAAAACCTCTA
47512000 AAATTCTTAAAACCTCTA
1 AAATTCTTAAAACCTCTA
47512018 AA
1 AA
47512020 TCTCATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (18 bp):
AAATTCTTAAAACCTCTA
Found at i:47515374 original size:34 final size:34
Alignment explanation
Indices: 47515329--47515399 Score: 124
Period size: 34 Copynumber: 2.1 Consensus size: 34
47515319 CCGAGTAATT
47515329 CCAACCCTTATCATTCAACAATAGAAACTCTTTC
1 CCAACCCTTATCATTCAACAATAGAAACTCTTTC
* *
47515363 CCAACCTTTATCATTCAACAGTAGAAACTCTTTC
1 CCAACCCTTATCATTCAACAATAGAAACTCTTTC
47515397 CCA
1 CCA
47515400 CTTATTCTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.34, C:0.32, G:0.04, T:0.30
Consensus pattern (34 bp):
CCAACCCTTATCATTCAACAATAGAAACTCTTTC
Found at i:47519593 original size:75 final size:75
Alignment explanation
Indices: 47519514--47519676 Score: 238
Period size: 75 Copynumber: 2.2 Consensus size: 75
47519504 CGCCCAGCGT
* * * *
47519514 TAGTCGGATAAACTGAA-GAAATAAATAGTGAGCCCAGCTCTAGTTGGATAAACCAACGATATTT
1 TAGTCGGATAAACT-AACGAAATAAATAGTGAGCACAGCTCTAGTAGGATAAACAAACAATATTT
47519578 GCACCCAACGC
65 GCACCCAACGC
* *
47519589 TAGTCTGATAAACTAACGAAATAACTAGTGAGCACAGCTCTAGTAGGATAAACAAACAATATTTG
1 TAGTCGGATAAACTAACGAAATAAATAGTGAGCACAGCTCTAGTAGGATAAACAAACAATATTTG
*
47519654 CACCCAGCGC
66 CACCCAACGC
*
47519664 TAGTCGGACAAAC
1 TAGTCGGATAAAC
47519677 CAACCAATGC
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
74 2 0.03
75 76 0.97
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.21
Consensus pattern (75 bp):
TAGTCGGATAAACTAACGAAATAAATAGTGAGCACAGCTCTAGTAGGATAAACAAACAATATTTG
CACCCAACGC
Found at i:47527805 original size:48 final size:48
Alignment explanation
Indices: 47527749--47527846 Score: 187
Period size: 48 Copynumber: 2.0 Consensus size: 48
47527739 AAATGCTATG
47527749 ACAAAACCAGACAAGAGTAAGAATGCAATGAGAAATTTGAGAATAATC
1 ACAAAACCAGACAAGAGTAAGAATGCAATGAGAAATTTGAGAATAATC
*
47527797 ACAAAACCAGACAAGAGTAAGAATGCAATGATAAATTTGAGAATAATC
1 ACAAAACCAGACAAGAGTAAGAATGCAATGAGAAATTTGAGAATAATC
47527845 AC
1 AC
47527847 GTGAATGATA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.52, C:0.13, G:0.17, T:0.17
Consensus pattern (48 bp):
ACAAAACCAGACAAGAGTAAGAATGCAATGAGAAATTTGAGAATAATC
Found at i:47530522 original size:32 final size:32
Alignment explanation
Indices: 47530480--47530549 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
47530470 ACAATTGTGA
47530480 AGAAG-AACAACAATCCTCAAGAAGTATCCCT
1 AGAAGCAACAACAATCCTCAAGAAGTATCCCT
47530511 AGAAGCAACAACAATCCTCAAGAAGTATCCCT
1 AGAAGCAACAACAATCCTCAAGAAGTATCCCT
47530543 AGAAGCA
1 AGAAGCA
47530550 TAAGATGAGC
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 5 0.13
32 33 0.87
ACGTcount: A:0.46, C:0.26, G:0.14, T:0.14
Consensus pattern (32 bp):
AGAAGCAACAACAATCCTCAAGAAGTATCCCT
Found at i:47545324 original size:182 final size:181
Alignment explanation
Indices: 47545099--47545621 Score: 893
Period size: 182 Copynumber: 2.9 Consensus size: 181
47545089 TTTTCACTTC
* *
47545099 AAATTTGTATACGACACCACTAACATACCCGAACCTCTTTTCTGGTAAGATTTTGGGGATGAAAA
1 AAATTTTTATACGACACTACTAACATACCCGAACCTCTTTTCTGGTAAGATTTTGGGGATGAAAA
*
47545164 TTCCTTTAGGGGGAGAGTTATAACAGTCCATTTTCAGTGAAATCGAAATAGTCGTTTCATGACCA
66 TTCCTTTAGGGGGAGAGTTGTAACAGTCCATTTTCAGTGAAATCGAAATAGT-GTTTCATGACCA
*
47545229 CAAATTCGACGTGAAAATATTTATTTTATACCATGAAAATATTTATGTTACA
130 CAAATTTGACGTGAAAATATTTATTTTATACCATGAAAATATTTATGTTACA
47545281 AAATTTTTATACGACACTACTAACATACCCGAACCTCTTTTCTGGTAAGATTTTGGGGATGAAAA
1 AAATTTTTATACGACACTACTAACATACCCGAACCTCTTTTCTGGTAAGATTTTGGGGATGAAAA
47545346 TTCCTTTAGGGGGAGAGTTGTAACAGTCCATTTTCAGTGAAATCGAAATAGTGATTTCATGACCA
66 TTCCTTTAGGGGGAGAGTTGTAACAGTCCATTTTCAGTGAAATCGAAATAGTG-TTTCATGACCA
*
47545411 CAAATTTTACGTGAAAATATTTATTTTATACCATGAAAATATTTATGTTACA
130 CAAATTTGACGTGAAAATATTTATTTTATACCATGAAAATATTTATGTTACA
* *
47545463 AAATTTTTATATGACACTACTAACATACCCGAACCTCTTTTCTGGTAAGATTTCGGGGATGAAAA
1 AAATTTTTATACGACACTACTAACATACCCGAACCTCTTTTCTGGTAAGATTTTGGGGATGAAAA
* * * * **
47545528 TTCCTTTAAGGGGAGAGTTGTAATAGTCAATTTTTAGTGAAATCGAAATAGTGGTTTTGTGACCA
66 TTCCTTTAGGGGGAGAGTTGTAACAGTCCATTTTCAGTGAAATCGAAATAGT-GTTTCATGACCA
*
47545593 TAAATTTGACGTGAAAATATTTATTTTAT
130 CAAATTTGACGTGAAAATATTTATTTTAT
47545622 TATTATTTTA
Statistics
Matches: 324, Mismatches: 15, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
181 1 0.00
182 322 0.99
183 1 0.00
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.35
Consensus pattern (181 bp):
AAATTTTTATACGACACTACTAACATACCCGAACCTCTTTTCTGGTAAGATTTTGGGGATGAAAA
TTCCTTTAGGGGGAGAGTTGTAACAGTCCATTTTCAGTGAAATCGAAATAGTGTTTCATGACCAC
AAATTTGACGTGAAAATATTTATTTTATACCATGAAAATATTTATGTTACA
Found at i:47552665 original size:50 final size:50
Alignment explanation
Indices: 47552586--47552689 Score: 183
Period size: 50 Copynumber: 2.1 Consensus size: 50
47552576 TGCTGGAATG
*
47552586 AGTT-GAATATAATGAATATTAAATGGATTAAATTTGCTTATTTAGATCA
1 AGTTAGAATAGAATGAATATTAAATGGATTAAATTTGCTTATTTAGATCA
*
47552635 AGTTAGAATAGAATGAATATTAAATGGATTAAATTTGTTTATTTAGATCA
1 AGTTAGAATAGAATGAATATTAAATGGATTAAATTTGCTTATTTAGATCA
47552685 AGTTA
1 AGTTA
47552690 AGCCTCGTAC
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
49 4 0.08
50 48 0.92
ACGTcount: A:0.41, C:0.03, G:0.15, T:0.40
Consensus pattern (50 bp):
AGTTAGAATAGAATGAATATTAAATGGATTAAATTTGCTTATTTAGATCA
Found at i:47561498 original size:19 final size:19
Alignment explanation
Indices: 47561462--47561519 Score: 52
Period size: 18 Copynumber: 3.2 Consensus size: 19
47561452 TTTTGATATA
*
47561462 ATATAGATTAGAAA-TTTTG
1 ATATA-ATTTGAAATTTTTG
47561481 ATATAATGTT--AATTTTT-
1 ATATAAT-TTGAAATTTTTG
*
47561498 TTATAATTTGAAATTTTTG
1 ATATAATTTGAAATTTTTG
47561517 ATA
1 ATA
47561520 AGTGTACATC
Statistics
Matches: 31, Mismatches: 3, Indels: 10
0.70 0.07 0.23
Matches are distributed among these distances:
16 2 0.06
17 8 0.26
18 13 0.42
19 8 0.26
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (19 bp):
ATATAATTTGAAATTTTTG
Found at i:47561849 original size:16 final size:18
Alignment explanation
Indices: 47561818--47561851 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
47561808 GTTGTTAGGA
47561818 TTTCTATATGTGTTTTTT
1 TTTCTATATGTGTTTTTT
47561836 TTTCT-TAT-TGTTTTTT
1 TTTCTATATGTGTTTTTT
47561852 ATTACTACGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 3 0.19
18 5 0.31
ACGTcount: A:0.09, C:0.06, G:0.09, T:0.76
Consensus pattern (18 bp):
TTTCTATATGTGTTTTTT
Found at i:47563709 original size:101 final size:102
Alignment explanation
Indices: 47563584--47563768 Score: 293
Period size: 101 Copynumber: 1.8 Consensus size: 102
47563574 AAAGTGATGG
* *
47563584 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT-A-GGTCGCATGTGTAGT
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACC-AAATGATAATGGTCACATGTGTAGT
*
47563647 ACTATGTGCAGGCTACTATGCGTACCGGATAGTTTCGA
65 ACTATGAGCAGGCTACTATGCGTACCGGATAGTTTCGA
* * *
47563685 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAAATGGTAATGGTCACATGTGTAGTA
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAATGATAATGGTCACATGTGTAGTA
47563750 CTATGAGCAGGCTACTATG
66 CTATGAGCAGGCTACTATG
47563769 TGAACCGAAC
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
100 5 0.07
101 38 0.50
102 33 0.43
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (102 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAATGATAATGGTCACATGTGTAGTA
CTATGAGCAGGCTACTATGCGTACCGGATAGTTTCGA
Found at i:47563714 original size:51 final size:51
Alignment explanation
Indices: 47563580--47563775 Score: 227
Period size: 51 Copynumber: 3.9 Consensus size: 51
47563570 AGTGAAAGTG
*
47563580 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-A-TG
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
* * *
47563629 ATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGT-
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
* * * * ** *
47563680 TTCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAAATGGTA
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
* * *
47563732 ATGGTCACATGTGTAGTACTATGAGCAGGCTACTATGTGAACCG
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
47563776 AACATCATTG
Statistics
Matches: 121, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
49 2 0.02
50 41 0.34
51 76 0.63
52 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (51 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
Found at i:47563833 original size:45 final size:45
Alignment explanation
Indices: 47563772--47563867 Score: 147
Period size: 45 Copynumber: 2.1 Consensus size: 45
47563762 TACTATGTGA
* * *
47563772 ACCGAACATCATTGATTAGTAAAGTGGTTGCTATGTGCTGATTCC
1 ACCGAACATAATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
* *
47563817 ACCGGACATAATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATAATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
47563862 ACCGAA
1 ACCGAA
47563868 TATCTGTTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (45 bp):
ACCGAACATAATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
Found at i:47572859 original size:303 final size:303
Alignment explanation
Indices: 47572305--47573213 Score: 1728
Period size: 303 Copynumber: 3.0 Consensus size: 303
47572295 ATTTTGCTGT
* *
47572305 TTTGAATGATTCCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGCCCAAGAAAC
1 TTTGAACGATTCCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGAAAC
47572370 TGAATCTTGCAGCAAAGGTGCATTGGATCTCCGTTACGAGTATCAACGAACCAATTTCGGTAGGA
66 TGAATCTTGCAGCAAAGGTGCATTGGATCTCCGTTACGAGTATCAACGAACCAATTTCGGTAGGA
47572435 AACAGACTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGATGTCCAAGCCCAAATCAAGGT
131 AACAGACTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGATGTCCAAGCCCAAATCAAGGT
47572500 CAAAGTGGCCCAATTTGTAAAATTCTAATTCTTTAAATACCTAGTTTAATTTTAGACTTTGGGAT
196 CAAAGTGGCCCAATTTGTAAAATTCTAATTCTTTAAATACCTAGTTTAATTTTAGACTTTGGGAT
47572565 TATTATATATGTAAAAATTCAGCCCAAGCAGCCCATTAAATGC
261 TATTATATATGTAAAAATTCAGCCCAAGCAGCCCATTAAATGC
47572608 TTTGAACGATTCCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGAAAC
1 TTTGAACGATTCCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGAAAC
* *
47572673 TGAATCTTGCAGCAAAGGTGCATTGGATCTCCGTTAAGAGTATCAACGAAACAATTTCGGTAGGA
66 TGAATCTTGCAGCAAAGGTGCATTGGATCTCCGTTACGAGTATCAACGAACCAATTTCGGTAGGA
*
47572738 AACAGACTACAAGCCCAAGTTCTTGAAGGCAAGGCTCAATAAGATGTCCAAGCCCAAATCAAGGT
131 AACAGACTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGATGTCCAAGCCCAAATCAAGGT
47572803 CAAAGTGGCCCAATTTGTAAAATTCTAATTCTTTAAATACCTAGTTTAATTTTAGACTTTGGGAT
196 CAAAGTGGCCCAATTTGTAAAATTCTAATTCTTTAAATACCTAGTTTAATTTTAGACTTTGGGAT
* *
47572868 TATTATATATGTAAAAATTCAGCCCAAGCAACCTATTAAATGC
261 TATTATATATGTAAAAATTCAGCCCAAGCAGCCCATTAAATGC
*
47572911 TTTGAACGATTCCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGAAAT
1 TTTGAACGATTCCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGAAAC
47572976 TGAATCTTGCAGCAAAGGTGCATTGGATCTCCGTTACGAGTATCAACGAACCAATTTCGGTAGGA
66 TGAATCTTGCAGCAAAGGTGCATTGGATCTCCGTTACGAGTATCAACGAACCAATTTCGGTAGGA
*
47573041 AACAGACTACAAGCCCAAGTTCTTGAAGGCAAAGCCCAATAAGATGTCCAAGCCCAAATCAAGGT
131 AACAGACTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGATGTCCAAGCCCAAATCAAGGT
*
47573106 CAAAGTGGCCCAATTTGTAAAATTCTAATTCTTTAAATACCTAGTTTAATTTTAGACTTTAGGAT
196 CAAAGTGGCCCAATTTGTAAAATTCTAATTCTTTAAATACCTAGTTTAATTTTAGACTTTGGGAT
47573171 TATTATATATGTAAAAATTCAGCCCAAGCAGCCCATTAAATGC
261 TATTATATATGTAAAAATTCAGCCCAAGCAGCCCATTAAATGC
47573214 CTTGGTCGAA
Statistics
Matches: 591, Mismatches: 15, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
303 591 1.00
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (303 bp):
TTTGAACGATTCCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGAAAC
TGAATCTTGCAGCAAAGGTGCATTGGATCTCCGTTACGAGTATCAACGAACCAATTTCGGTAGGA
AACAGACTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGATGTCCAAGCCCAAATCAAGGT
CAAAGTGGCCCAATTTGTAAAATTCTAATTCTTTAAATACCTAGTTTAATTTTAGACTTTGGGAT
TATTATATATGTAAAAATTCAGCCCAAGCAGCCCATTAAATGC
Found at i:47577068 original size:60 final size:60
Alignment explanation
Indices: 47576940--47577066 Score: 157
Period size: 59 Copynumber: 2.1 Consensus size: 60
47576930 CTTGTTTTAA
* ** * * * *
47576940 AAATTTTTAGAATTAGAACTAAATTGACAAATTTTGTAAATGTTGAGGGTTAATTTTATT
1 AAATTTTTAGAATTAGAACTAAAATGACAAATTTTGTAAACATTAAGAGCTAAATTTATT
* * *
47577000 AAATTTTTAGAATTTGAACTAAAATG-TAAATTTTGTAAACATTAAGAGCTAAATTTGTT
1 AAATTTTTAGAATTAGAACTAAAATGACAAATTTTGTAAACATTAAGAGCTAAATTTATT
47577059 AAATTTTT
1 AAATTTTT
47577067 TATATTTAGA
Statistics
Matches: 57, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
59 33 0.58
60 24 0.42
ACGTcount: A:0.40, C:0.04, G:0.13, T:0.43
Consensus pattern (60 bp):
AAATTTTTAGAATTAGAACTAAAATGACAAATTTTGTAAACATTAAGAGCTAAATTTATT
Found at i:47580348 original size:14 final size:14
Alignment explanation
Indices: 47580329--47580355 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
47580319 TAACAACACA
47580329 AATAACTTTTTTAG
1 AATAACTTTTTTAG
47580343 AATAACTTTTTTA
1 AATAACTTTTTTA
47580356 AAATTTATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.52
Consensus pattern (14 bp):
AATAACTTTTTTAG
Found at i:47581649 original size:34 final size:34
Alignment explanation
Indices: 47581611--47581707 Score: 90
Period size: 29 Copynumber: 3.1 Consensus size: 34
47581601 TAAAGTCATG
47581611 CATTATGTAACTTTCATGTTAGTTAAGTTTGCAT
1 CATTATGTAACTTTCATGTTAGTTAAGTTTGCAT
* *
47581645 CATTA---AA--TT-AAGTCATGTT-AGTTT--A-
1 CATTATGTAACTTTCATGTTA-GTTAAGTTTGCAT
47581670 -ATTATGTAACTTTCATGTTAGTTAAGTTTGCAT
1 CATTATGTAACTTTCATGTTAGTTAAGTTTGCAT
47581703 CATTA
1 CATTA
47581708 AATTAAGTCA
Statistics
Matches: 47, Mismatches: 4, Indels: 24
0.63 0.05 0.32
Matches are distributed among these distances:
24 4 0.09
26 1 0.02
27 2 0.04
28 9 0.19
29 10 0.21
30 9 0.19
31 2 0.04
32 1 0.02
34 9 0.19
ACGTcount: A:0.30, C:0.10, G:0.13, T:0.46
Consensus pattern (34 bp):
CATTATGTAACTTTCATGTTAGTTAAGTTTGCAT
Found at i:47581661 original size:33 final size:33
Alignment explanation
Indices: 47581624--47581719 Score: 102
Period size: 33 Copynumber: 3.2 Consensus size: 33
47581614 TATGTAACTT
47581624 TCATGTTAGTTAAGTTTGCATCATTAAATTAAG
1 TCATGTTAGTTAAGTTTGCATCATTAAATTAAG
* *
47581657 TCATGTTAGTTTAA--TT--AT--GTAACTT---
1 TCATGTTAG-TTAAGTTTGCATCATTAAATTAAG
47581682 TCATGTTAGTTAAGTTTGCATCATTAAATTAAG
1 TCATGTTAGTTAAGTTTGCATCATTAAATTAAG
47581715 TCATG
1 TCATG
47581720 CATTAACTCA
Statistics
Matches: 49, Mismatches: 4, Indels: 20
0.67 0.05 0.27
Matches are distributed among these distances:
24 4 0.08
25 9 0.18
26 2 0.04
28 7 0.14
30 7 0.14
32 2 0.04
33 14 0.29
34 4 0.08
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.45
Consensus pattern (33 bp):
TCATGTTAGTTAAGTTTGCATCATTAAATTAAG
Found at i:47581896 original size:14 final size:14
Alignment explanation
Indices: 47581877--47581905 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
47581867 TAAAATGTGA
47581877 TTAATGTGTTTGAT
1 TTAATGTGTTTGAT
47581891 TTAATGTGTTTGAT
1 TTAATGTGTTTGAT
47581905 T
1 T
47581906 ACAGGTGTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.59
Consensus pattern (14 bp):
TTAATGTGTTTGAT
Found at i:47586914 original size:22 final size:24
Alignment explanation
Indices: 47586865--47586918 Score: 69
Period size: 22 Copynumber: 2.3 Consensus size: 24
47586855 TTTTTTATGA
47586865 TTAAATTATTGTTATTAAATATGCT
1 TTAAATTATTGTTATT-AATATGCT
47586890 TTAAATTATTG-TATT-ATAT-CTT
1 TTAAATTATTGTTATTAATATGC-T
47586912 TTAAATT
1 TTAAATT
47586919 TAATTTATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
21 1 0.04
22 12 0.43
24 4 0.14
25 11 0.39
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.56
Consensus pattern (24 bp):
TTAAATTATTGTTATTAATATGCT
Found at i:47589214 original size:23 final size:23
Alignment explanation
Indices: 47589187--47589261 Score: 132
Period size: 23 Copynumber: 3.3 Consensus size: 23
47589177 GAAGATTTTG
*
47589187 GCATATTCCCTGAAGCGAATATT
1 GCATATTCCCTGAAGTGAATATT
47589210 GCATATTCCCTGAAGTGAATATT
1 GCATATTCCCTGAAGTGAATATT
47589233 GCATATTCCCTGAAGTGAATATT
1 GCATATTCCCTGAAGTGAATATT
*
47589256 GTATAT
1 GCATAT
47589262 AATTATTTGG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 50 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (23 bp):
GCATATTCCCTGAAGTGAATATT
Found at i:47592728 original size:29 final size:32
Alignment explanation
Indices: 47592668--47592730 Score: 87
Period size: 29 Copynumber: 2.1 Consensus size: 32
47592658 ACAAGAAATA
47592668 ATAATATATAAAATTTAAAATTATATAATAAT
1 ATAATATATAAAATTTAAAATTATATAATAAT
* *
47592700 ATAATA-AT-AAATTT-AAATTTTATATTAAT
1 ATAATATATAAAATTTAAAATTATATAATAAT
47592729 AT
1 AT
47592731 TTATATTAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 15 0.52
30 6 0.21
31 2 0.07
32 6 0.21
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (32 bp):
ATAATATATAAAATTTAAAATTATATAATAAT
Found at i:47603495 original size:31 final size:32
Alignment explanation
Indices: 47603457--47603523 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
47603447 TTAATGACTA
* * * *
47603457 GTGACCAAAAGAG-AAAAGATCGAATAGTTGG
1 GTGACCAAAAAAGAAAAAAATCAAATAATTGG
47603488 GTGACCAAAAAAGAAAAAAATCAAATAATTGG
1 GTGACCAAAAAAGAAAAAAATCAAATAATTGG
47603520 GTGA
1 GTGA
47603524 TCATTTCATA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
31 12 0.39
32 19 0.61
ACGTcount: A:0.51, C:0.09, G:0.24, T:0.16
Consensus pattern (32 bp):
GTGACCAAAAAAGAAAAAAATCAAATAATTGG
Found at i:47607361 original size:16 final size:17
Alignment explanation
Indices: 47607317--47607367 Score: 86
Period size: 18 Copynumber: 3.0 Consensus size: 17
47607307 TAATAATAAT
47607317 TATTTTATTAAATTATA
1 TATTTTATTAAATTATA
47607334 TATTTTTATTAAATTATA
1 TA-TTTTATTAAATTATA
47607352 TATTTT-TTAAATTATA
1 TATTTTATTAAATTATA
47607368 CATATACCTA
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
16 10 0.30
17 6 0.18
18 17 0.52
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TATTTTATTAAATTATA
Found at i:47607372 original size:18 final size:18
Alignment explanation
Indices: 47607312--47607372 Score: 74
Period size: 18 Copynumber: 3.4 Consensus size: 18
47607302 AATTTTAATA
47607312 ATAATTATTTTATTAAATT
1 ATAA-TATTTTATTAAATT
47607331 AT-ATATTTTTATTAAATT
1 ATAATA-TTTTATTAAATT
47607349 AT-ATATTTT-TTAAATT
1 ATAATATTTTATTAAATT
47607365 ATACATAT
1 ATA-ATAT
47607373 ACCTACAAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
16 9 0.23
17 6 0.15
18 22 0.56
19 2 0.05
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (18 bp):
ATAATATTTTATTAAATT
Found at i:47610634 original size:21 final size:21
Alignment explanation
Indices: 47610593--47610635 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
47610583 AATAAAGTAG
*
47610593 ATTATATATTATTTTTATAGT
1 ATTATATATTATATTTATAGT
47610614 ATTATATATTATGATTT-TAGT
1 ATTATATATTAT-ATTTATAGT
47610635 A
1 A
47610636 AATTCATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (21 bp):
ATTATATATTATATTTATAGT
Found at i:47610664 original size:10 final size:10
Alignment explanation
Indices: 47610651--47610723 Score: 59
Period size: 10 Copynumber: 7.9 Consensus size: 10
47610641 ATATAAAAAT
47610651 AATTATATTA
1 AATTATATTA
*
47610661 AATTTTATTA
1 AATTATATTA
47610671 AATTATA-T-
1 AATTATATTA
* *
47610679 ATTTTTATTA
1 AATTATATTA
47610689 AATTATATT-
1 AATTATATTA
*
47610698 --TAATATT-
1 AATTATATTA
*
47610705 AATTATTTTA
1 AATTATATTA
47610715 AATTATATT
1 AATTATATT
47610724 TTATAGTATT
Statistics
Matches: 48, Mismatches: 10, Indels: 10
0.71 0.15 0.15
Matches are distributed among these distances:
7 6 0.12
8 5 0.10
9 7 0.15
10 30 0.62
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
AATTATATTA
Found at i:47610715 original size:26 final size:25
Alignment explanation
Indices: 47610686--47610823 Score: 94
Period size: 26 Copynumber: 5.5 Consensus size: 25
47610676 TATATTTTTA
47610686 TTAAATTATATTTAATATTAATTATT
1 TTAAATTATATTT-ATATTAATTATT
*
47610712 TTAAATTATATTT-TA-T-AGTATT
1 TTAAATTATATTTATATTAATTATT
* * *
47610734 ATATATTATGATTT-TAGTAAATTCA-T
1 TTAAATTAT-ATTTATA-TTAATT-ATT
* *
47610760 ATAAGA--ATAATTATATTGAATT-TT
1 TTAA-ATTATATTTATATT-AATTATT
47610784 ATTAAATTATATTTAATATTAATTATT
1 -TTAAATTATATTT-ATATTAATTATT
47610811 TTAAATTATATTT
1 TTAAATTATATTT
47610824 TATAGTCTTA
Statistics
Matches: 88, Mismatches: 10, Indels: 28
0.70 0.08 0.22
Matches are distributed among these distances:
22 12 0.14
23 7 0.08
24 8 0.09
25 11 0.12
26 41 0.47
27 9 0.10
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (25 bp):
TTAAATTATATTTATATTAATTATT
Found at i:47610738 original size:117 final size:110
Alignment explanation
Indices: 47610593--47611130 Score: 584
Period size: 117 Copynumber: 4.9 Consensus size: 110
47610583 AATAAAGTAG
*
47610593 ATTATATATTAT-TTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAAAATAATTAT
1 ATTAT-TATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAATTAT
47610657 ATTAAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATATTA
65 ATTAAATTTTATTAAATTATATA--TTTATTAAATTATATTT-ATATTA
47610706 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAAT
1 ATTA--TT--ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAAT
* *
47610771 TATATTGAATTTTATTAAA-T-TATATTTA--ATATTA-A--T-TATT-
62 TATATTAAATTTTATTAAATTATATATTTATTAAATTATATTTATATTA
* * *
47610811 -TTA-AATTATATTTTATAGTCTTATATATTATGATTTTAGTAAATTCATATAAGAATAATTATC
1 ATTATTATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAATTATA
* *
47610874 TTGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATA
66 TTAAATTTTATTAAATTATATA--TTTATTAAATTATATTT-ATATTA
*
47610922 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATT
1 ATTA--TT--ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAAT
*
47610987 TAATATTAAGAATTTTTATTAAA-T-TATATTTAAT-AA-T-TA--T-TATT-
62 T-ATATT-A-AA-TTTTATTAAATTATATATTTATTAAATTATATTTATATTA
* *
47611031 -TTA-AATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAAT
1 ATTATTATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAATT-AT
* *
47611094 ATTAAAAATTTTATTAAATTATAT-TTAATAAAATTAT
65 ATT--AAATTTTATTAAATTATATATTTATTAAATTAT
47611131 GTTAAAATAT
Statistics
Matches: 373, Mismatches: 19, Indels: 73
0.80 0.04 0.16
Matches are distributed among these distances:
99 72 0.19
100 1 0.00
101 4 0.01
102 10 0.03
103 72 0.19
104 10 0.03
105 6 0.02
106 6 0.02
108 5 0.01
110 7 0.02
111 5 0.01
112 4 0.01
113 8 0.02
114 3 0.01
115 6 0.02
116 8 0.02
117 125 0.34
118 4 0.01
119 4 0.01
120 3 0.01
121 10 0.03
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (110 bp):
ATTATTATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAATTATA
TTAAATTTTATTAAATTATATATTTATTAAATTATATTTATATTA
Found at i:47610793 original size:99 final size:99
Alignment explanation
Indices: 47610681--47610894 Score: 410
Period size: 99 Copynumber: 2.2 Consensus size: 99
47610671 AATTATATAT
47610681 TTTTATTAAATTATATTTAATATTAATTATTTTAAATTATATTTTATAGTATTATATATTATGAT
1 TTTTATTAAATTATATTTAATATTAATTATTTTAAATTATATTTTATAGTATTATATATTATGAT
47610746 TTTAGTAAATTCATATAAGAATAATTATATTGAA
66 TTTAGTAAATTCATATAAGAATAATTATATTGAA
*
47610780 TTTTATTAAATTATATTTAATATTAATTATTTTAAATTATATTTTATAGTCTTATATATTATGAT
1 TTTTATTAAATTATATTTAATATTAATTATTTTAAATTATATTTTATAGTATTATATATTATGAT
*
47610845 TTTAGTAAATTCATATAAGAATAATTATCTTGAA
66 TTTAGTAAATTCATATAAGAATAATTATATTGAA
47610879 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
47610895 ATTTTTATTA
Statistics
Matches: 113, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
99 113 1.00
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.53
Consensus pattern (99 bp):
TTTTATTAAATTATATTTAATATTAATTATTTTAAATTATATTTTATAGTATTATATATTATGAT
TTTAGTAAATTCATATAAGAATAATTATATTGAA
Found at i:47610979 original size:216 final size:219
Alignment explanation
Indices: 47610600--47611117 Score: 893
Period size: 216 Copynumber: 2.4 Consensus size: 219
47610590 TAGATTATAT
*
47610600 ATTAT-TTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAAAATAATTATATTAAAT
1 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAATTATATTAAAT
*
47610664 TTTATTAAATTATATATTTTTATTAAATTATATTTAATATTAATTATTTTAAATTATATTTTATA
66 TTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATA
47610729 GTATTATATATTATGATTTTAGTAAATTCATATAAGAATAATT-ATATT-GAA-TTTTATTAAAT
131 GTATTATATATTATGATTTTAGTAAATTCATATAAGAATAATTAATATTAGAATTTTTATTAAAT
47610791 TATATTTAAT-ATTAATTATTTTAA
196 TATATTTAATAATT-ATTATTTTAA
* * *
47610815 ATTATATTTTATAGTCTTATATATTATGATTTTAGTAAATTCATATAAGAATAATTATCTTGAAT
1 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAATTATATTAAAT
47610880 TTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATA
66 TTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATA
*
47610945 GTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTTATTAAA
131 GTATTATATATTATGATTTTAGTAAATTCATATAAGAATAATTAATATT-AGAATTTTTATTAAA
47611010 TTATATTTAATAATTATTATTTTAA
195 TTATATTTAATAATTATTATTTTAA
*
47611035 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAA
1 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAATT-ATATT--A
47611100 AATTTTATTAAATTATAT
63 AATTTTATTAAATTATAT
47611118 TTAATAAAAT
Statistics
Matches: 284, Mismatches: 10, Indels: 10
0.93 0.03 0.03
Matches are distributed among these distances:
215 5 0.02
216 161 0.57
217 5 0.02
219 3 0.01
220 85 0.30
221 7 0.02
223 18 0.06
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (219 bp):
ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAATTATATTAAAT
TTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATA
GTATTATATATTATGATTTTAGTAAATTCATATAAGAATAATTAATATTAGAATTTTTATTAAAT
TATATTTAATAATTATTATTTTAA
Found at i:47610987 original size:59 final size:59
Alignment explanation
Indices: 47610807--47610987 Score: 190
Period size: 59 Copynumber: 3.1 Consensus size: 59
47610797 TAATATTAAT
*
47610807 TATTTTAAATTATATTTTATAGTCTTATATATTATGATTTTAGTAAATTCATATAAGAA
1 TATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAA
* ** * * * ** * * * *
47610866 TA-ATTATCTTGA-ATTTTATTA-AATTATATATTTTTATTAAATTATATTTA-ATAATAA
1 TATTTTAAATT-ATATTTTA-TAGTATTATATATTATGATTTTAGTAAATTCATATAAGAA
47610923 TTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAA
1 -TATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAA
47610983 TATTT
1 TATTT
47610988 AATATTAAGA
Statistics
Matches: 90, Mismatches: 25, Indels: 14
0.70 0.19 0.11
Matches are distributed among these distances:
57 6 0.07
58 36 0.40
59 42 0.47
60 6 0.07
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.53
Consensus pattern (59 bp):
TATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAA
Found at i:47611008 original size:103 final size:99
Alignment explanation
Indices: 47610897--47611136 Score: 340
Period size: 103 Copynumber: 2.4 Consensus size: 99
47610887 AATTATATAT
*
47610897 TTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGAT
1 TTTTATTAAATTATATTTAATATTAATTATTTTAAATTATATTTTATAGTATTATATATTATGAT
*
47610962 TTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
66 TTTAGTAAATTCATATAAGAATAATT-ATATT--GAA
47610999 TTTTTATTAAATTATATTTAATAATT-ATTATTTTAAATTATATTTTATAGTATTATATATTATG
1 -TTTTATTAAATTATATTTAAT-ATTAATTATTTTAAATTATATTTTATAGTATTATATATTATG
* *
47611063 ATTTTAGTAAATTCATATAAGAATATTTAATATTAAAAA
64 ATTTTAGTAAATTCATATAAGAATAATT-ATATT--GAA
* *
47611102 TTTTATTAAATTATATTTAATA-AAATTATGTTAAA
1 TTTTATTAAATTATATTTAATATTAATTATTTTAAA
47611137 ATATGATTAA
Statistics
Matches: 131, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
101 11 0.08
102 21 0.16
103 97 0.74
104 2 0.02
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (99 bp):
TTTTATTAAATTATATTTAATATTAATTATTTTAAATTATATTTTATAGTATTATATATTATGAT
TTTAGTAAATTCATATAAGAATAATTATATTGAA
Found at i:47616898 original size:9 final size:9
Alignment explanation
Indices: 47616881--47616917 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
47616871 TTTTTTCTCC
47616881 AAAACCCTA
1 AAAACCCTA
*
47616890 AAAATCCTA
1 AAAACCCTA
47616899 AAAACCCT-
1 AAAACCCTA
47616907 AAAACCCTA
1 AAAACCCTA
47616916 AA
1 AA
47616918 CCTTAAAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
8 8 0.32
9 17 0.68
ACGTcount: A:0.57, C:0.30, G:0.00, T:0.14
Consensus pattern (9 bp):
AAAACCCTA
Found at i:47617293 original size:29 final size:29
Alignment explanation
Indices: 47617232--47617293 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 29
47617222 GATAATGCCA
**
47617232 ATTTTTTTAATATTTATGGGATTAGGTTG
1 ATTTTTTTAATATTTATGGGATTAAATTG
*
47617261 -TTTTTTTAATATTTGTGGGATTAAATTG
1 ATTTTTTTAATATTTATGGGATTAAATTG
47617289 ATTTT
1 ATTTT
47617294 GGAAAATGCG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 25 0.86
29 4 0.14
ACGTcount: A:0.24, C:0.00, G:0.18, T:0.58
Consensus pattern (29 bp):
ATTTTTTTAATATTTATGGGATTAAATTG
Found at i:47618967 original size:29 final size:28
Alignment explanation
Indices: 47618921--47618985 Score: 85
Period size: 29 Copynumber: 2.3 Consensus size: 28
47618911 TCAATGCATT
* * *
47618921 TTCAAAAATCGGTCTAATCCCATAAATA
1 TTCAAAAAGCGGCCTAATCCAATAAATA
47618949 TTCAATAAAGCGGCCTAATCCAATAAATA
1 TTCAA-AAAGCGGCCTAATCCAATAAATA
*
47618978 TTAAAAAA
1 TTCAAAAA
47618986 AATAGGCATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 8 0.25
29 24 0.75
ACGTcount: A:0.48, C:0.18, G:0.08, T:0.26
Consensus pattern (28 bp):
TTCAAAAAGCGGCCTAATCCAATAAATA
Found at i:47619338 original size:21 final size:21
Alignment explanation
Indices: 47619313--47619354 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
47619303 TATTCTTTAA
47619313 AAATACT-AGTATTTTTAGTTG
1 AAATACTCA-TATTTTTAGTTG
*
47619334 AAATACTCATGTTTTTAGTTG
1 AAATACTCATATTTTTAGTTG
47619355 TATACACAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.31, C:0.07, G:0.14, T:0.48
Consensus pattern (21 bp):
AAATACTCATATTTTTAGTTG
Found at i:47633816 original size:20 final size:19
Alignment explanation
Indices: 47633791--47633892 Score: 60
Period size: 20 Copynumber: 5.0 Consensus size: 19
47633781 ATGTGCAATT
47633791 CAGGGGTACCGAAGTACAAA
1 CAGGGGTA-CGAAGTACAAA
* * * *
47633811 CAGGGGCACGTATGTGCAATT
1 CAGGGGTACG-AAGTACAA-A
47633832 CAGGGGTATCGAAGTACAAA
1 CAGGGGTA-CGAAGTACAAA
* * * *
47633852 TAGGGGCACGTATGTGCAAA
1 CAGGGGTACG-AAGTACAAA
*
47633872 TCAAGGGTACCGAAGTACAAA
1 -CAGGGGTA-CGAAGTACAAA
47633893 TAAGGGAACG
Statistics
Matches: 59, Mismatches: 17, Indels: 11
0.68 0.20 0.13
Matches are distributed among these distances:
19 4 0.07
20 26 0.44
21 25 0.42
22 4 0.07
ACGTcount: A:0.35, C:0.18, G:0.30, T:0.17
Consensus pattern (19 bp):
CAGGGGTACGAAGTACAAA
Found at i:47633829 original size:41 final size:41
Alignment explanation
Indices: 47633768--47634040 Score: 368
Period size: 41 Copynumber: 6.7 Consensus size: 41
47633758 TTGGAGTGTA
*
47633768 AAAC-GGGGCACGTATGTGCAATTCAGGGGTACCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTAC
* *
47633808 AAACAGGGGCACGTATGTGCAATTCAGGGGTATCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTAC
* *
47633849 AAATAGGGGCACGTATGTGCAAATCAAGGGTACCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTAC
* * * * * * * *
47633890 AAATAAGGGAACGTATGTGCAATTTAGGGGTATCAAAGTCC
1 AAACAGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTAC
* * *
47633931 AAACAGAGGCACATATGTGCAATTCAAGGGTATCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTAC
47633972 AAACAGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTAC
* * *
47634013 AAACAAGGGCACATATGTGTAATTCAAG
1 AAACAGGGGCACGTATGTGCAATTCAAG
47634041 AAATAATTAA
Statistics
Matches: 204, Mismatches: 28, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
40 4 0.02
41 200 0.98
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (41 bp):
AAACAGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTAC
Found at i:47633999 original size:123 final size:123
Alignment explanation
Indices: 47633777--47634038 Score: 407
Period size: 123 Copynumber: 2.1 Consensus size: 123
47633767 AAAACGGGGC
* * * *
47633777 ACGTATGTGCAATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAGGGGTATC
1 ACGTATGTGCAATTCAGGGGTACCAAAGTACAAACAGAGGCACATATGTGCAATTCAAGGGTATC
* *
47633842 GAAGTACAAATAGGGGCACGTATGTGCAAATCAAGGGTACCGAAGTACAAATAAGGGA
66 GAAGTACAAACAGGGGCACGTATGTGCAAATCAAGGGTACCGAAGTACAAACAAGGGA
* * *
47633900 ACGTATGTGCAATTTAGGGGTATCAAAGTCCAAACAGAGGCACATATGTGCAATTCAAGGGTATC
1 ACGTATGTGCAATTCAGGGGTACCAAAGTACAAACAGAGGCACATATGTGCAATTCAAGGGTATC
* *
47633965 GAAGTACAAACAGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAACAAGGGC
66 GAAGTACAAACAGGGGCACGTATGTGCAAATCAAGGGTACCGAAGTACAAACAAGGGA
* *
47634023 ACATATGTGTAATTCA
1 ACGTATGTGCAATTCA
47634039 AGAAATAATT
Statistics
Matches: 125, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
123 125 1.00
ACGTcount: A:0.35, C:0.17, G:0.27, T:0.20
Consensus pattern (123 bp):
ACGTATGTGCAATTCAGGGGTACCAAAGTACAAACAGAGGCACATATGTGCAATTCAAGGGTATC
GAAGTACAAACAGGGGCACGTATGTGCAAATCAAGGGTACCGAAGTACAAACAAGGGA
Found at i:47634021 original size:20 final size:19
Alignment explanation
Indices: 47633955--47634021 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 19
47633945 ATGTGCAATT
47633955 CAAGGGTATCGAAGTACAAA
1 CAAGGGTA-CGAAGTACAAA
* * * * *
47633975 CAGGGGCACGTATGTGCAATT
1 CAAGGGTACG-AAGTACAA-A
47633996 CAAGGGTACCGAAGTACAAA
1 CAAGGGTA-CGAAGTACAAA
47634016 CAAGGG
1 CAAGGG
47634022 CACATATGTG
Statistics
Matches: 34, Mismatches: 10, Indels: 6
0.68 0.20 0.12
Matches are distributed among these distances:
19 2 0.06
20 18 0.53
21 12 0.35
22 2 0.06
ACGTcount: A:0.37, C:0.18, G:0.30, T:0.15
Consensus pattern (19 bp):
CAAGGGTACGAAGTACAAA
Found at i:47648947 original size:4 final size:4
Alignment explanation
Indices: 47648925--47648957 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
47648915 AACAAGAGAA
*
47648925 GAAT GAA- GAAT GGAT GAAT GAAT GAAT GAAT GA
1 GAAT GAAT GAAT GAAT GAAT GAAT GAAT GAAT GA
47648958 TGGATGGATG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.48, C:0.00, G:0.30, T:0.21
Consensus pattern (4 bp):
GAAT
Found at i:47648947 original size:12 final size:12
Alignment explanation
Indices: 47648927--47648963 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
47648917 CAAGAGAAGA
47648927 ATGAA-GAATGG
1 ATGAATGAATGG
*
47648938 ATGAATGAATGA
1 ATGAATGAATGG
47648950 ATGAATG-ATGG
1 ATGAATGAATGG
47648961 ATG
1 ATG
47648964 GATGGATGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
11 11 0.48
12 12 0.52
ACGTcount: A:0.43, C:0.00, G:0.32, T:0.24
Consensus pattern (12 bp):
ATGAATGAATGG
Found at i:47648960 original size:23 final size:23
Alignment explanation
Indices: 47648925--47648973 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
47648915 AACAAGAGAA
47648925 GAATGAAGAATGGATGAATGAAT
1 GAATGAAGAATGGATGAATGAAT
* *
47648948 GAATGAATG-ATGGATGGATGGAT
1 GAATGAA-GAATGGATGAATGAAT
47648971 GAA
1 GAA
47648974 GGATATGGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 22 0.96
24 1 0.04
ACGTcount: A:0.43, C:0.00, G:0.35, T:0.22
Consensus pattern (23 bp):
GAATGAAGAATGGATGAATGAAT
Found at i:47648967 original size:8 final size:8
Alignment explanation
Indices: 47648932--47648977 Score: 51
Period size: 8 Copynumber: 6.0 Consensus size: 8
47648922 GAAGAATGAA
47648932 GAATGGAT
1 GAATGGAT
*
47648940 GAATGAAT
1 GAATGGAT
*
47648948 GAATGAAT
1 GAATGGAT
47648956 G-ATGGAT
1 GAATGGAT
*
47648963 GGATGGAT
1 GAATGGAT
47648971 GAA-GGAT
1 GAATGGAT
47648978 ATGGGAATGA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
7 10 0.29
8 24 0.71
ACGTcount: A:0.39, C:0.00, G:0.37, T:0.24
Consensus pattern (8 bp):
GAATGGAT
Found at i:47651359 original size:398 final size:398
Alignment explanation
Indices: 47650623--47651420 Score: 1542
Period size: 398 Copynumber: 2.0 Consensus size: 398
47650613 TTCATTGAAG
47650623 TCACAATAATGAAAGGGTCTTCTATGCTTGAAAATGTATCTGGGATTCCCAGGGGTAGGGAATCT
1 TCACAATAATGAAAGGGTCTTCTATGCTTGAAAATGTATCTGGGATTCCCAGGGGTAGGGAATCT
47650688 TAGTAGGCTTTGAAGGGTGGTGGACAGAAAGCGCGCCCAATTGGGGGAGCTTTATTGCTAACATG
66 TAGTAGGCTTTGAAGGGTGGTGGACAGAAAGCGCGCCCAATTGGGGGAGCTTTATTGCTAACATG
47650753 TTAGGGAAAATGTGAGAAAGTGTGTCCAAATAAGCACGATTTCCCTGACATGTCAACAAGAAAGC
131 TTAGGGAAAATGTGAGAAAGTGTGTCCAAATAAGCACGATTTCCCTGACATGTCAACAAGAAAGC
47650818 TCACCCAGTTGGATGCGTTTTTTGTCCACCACCCATCAAAGCCTACCAATATGCCCTGAGCTTGG
196 TCACCCAGTTGGATGCGTTTTTTGTCCACCACCCATCAAAGCCTACCAATATGCCCTGAGCTTGG
*
47650883 GAATCCCTGGTAAGATTTAAGGCACCTCTTTTAGAAGTTCAATGAAAATGTCTCTTCTACGACTT
261 GAATCCCTGGTAAGATTTAAGGCACCTCTTTTAGAAGTTCAATGAAAATGTCTCTTCTACGACGT
47650948 ATTTTCAACCATAAATTATTTTTCCTTTTTAATCTCACCCCTCTTTAGTGCCTATAAAAGAGGGG
326 ATTTTCAACCATAAATTATTTTTCCTTTTTAATCTCACCCCTCTTTAGTGCCTATAAAAGAGGGG
47651013 GCTGTCCC
391 GCTGTCCC
*
47651021 TCACAATAATGAAAGGGTCTTCTATGCTTGAAAATGTATCTGGGATTCCTAGGGGTAGGGAATCT
1 TCACAATAATGAAAGGGTCTTCTATGCTTGAAAATGTATCTGGGATTCCCAGGGGTAGGGAATCT
* *
47651086 TAGTAGGCTTTGAAGGGTGGTGGACAGAAAGCGCGTCCAATTGGGTGAGCTTTATTGCTAACATG
66 TAGTAGGCTTTGAAGGGTGGTGGACAGAAAGCGCGCCCAATTGGGGGAGCTTTATTGCTAACATG
*
47651151 TTAGGGAAAATGTGAGAAAGTGTGTCCAAATAAGCACGATTTCCCTGACATGTCAGCAAGAAAGC
131 TTAGGGAAAATGTGAGAAAGTGTGTCCAAATAAGCACGATTTCCCTGACATGTCAACAAGAAAGC
47651216 TCACCCAGTTGGATGCGTTTTTTGTCCACCACCCATCAAAGCCTACCAATATGCCCTGAGCTTGG
196 TCACCCAGTTGGATGCGTTTTTTGTCCACCACCCATCAAAGCCTACCAATATGCCCTGAGCTTGG
*
47651281 GAATCCCTGGTAAGATTTAAGGTACCTCTTTTAGAAGTTCAATGAAAATGTCTCTTCTACGACGT
261 GAATCCCTGGTAAGATTTAAGGCACCTCTTTTAGAAGTTCAATGAAAATGTCTCTTCTACGACGT
47651346 ATTTTCAACCATAAATTATTTTTCCTTTTTAATCTCACCCCTCTTTAGTGCCTATAAAAGAGGGG
326 ATTTTCAACCATAAATTATTTTTCCTTTTTAATCTCACCCCTCTTTAGTGCCTATAAAAGAGGGG
47651411 GCTGTCCC
391 GCTGTCCC
47651419 TC
1 TC
47651421 TATACTCCAT
Statistics
Matches: 394, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
398 394 1.00
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.30
Consensus pattern (398 bp):
TCACAATAATGAAAGGGTCTTCTATGCTTGAAAATGTATCTGGGATTCCCAGGGGTAGGGAATCT
TAGTAGGCTTTGAAGGGTGGTGGACAGAAAGCGCGCCCAATTGGGGGAGCTTTATTGCTAACATG
TTAGGGAAAATGTGAGAAAGTGTGTCCAAATAAGCACGATTTCCCTGACATGTCAACAAGAAAGC
TCACCCAGTTGGATGCGTTTTTTGTCCACCACCCATCAAAGCCTACCAATATGCCCTGAGCTTGG
GAATCCCTGGTAAGATTTAAGGCACCTCTTTTAGAAGTTCAATGAAAATGTCTCTTCTACGACGT
ATTTTCAACCATAAATTATTTTTCCTTTTTAATCTCACCCCTCTTTAGTGCCTATAAAAGAGGGG
GCTGTCCC
Found at i:47653331 original size:125 final size:126
Alignment explanation
Indices: 47653191--47653431 Score: 405
Period size: 126 Copynumber: 1.9 Consensus size: 126
47653181 TAATTTTTAA
* *
47653191 AAAAAATCTGAAAACTTAAAAATTATCAAAAATTT-AAAAAGTGTAAAATTTTTTTAATACTAAA
1 AAAAAATCTAAAAACTTAAAAATTATCAAAAATTTAAAAAAGTGTAAAATTTATTTAATACTAAA
47653255 AATTATAATAATATTCTATAATTTTTAAAAATTTTGAA-AAATTAATTAATTTTTTACCTAT
66 AATTATAATAATATTCTATAATTTTTAAAAATTTT-AAGAAATTAATTAATTTTTTACCTAT
* *
47653316 AAAAAATCTAAAAACTTAAAAATTATCAAAATTTTAAAAAAGTGTAAAGTTTATTTAATACTAAA
1 AAAAAATCTAAAAACTTAAAAATTATCAAAAATTTAAAAAAGTGTAAAATTTATTTAATACTAAA
* *
47653381 AATTATAATAATATTCTATAATTTTTAGATATTTTAAGAAATTAATTAATT
66 AATTATAATAATATTCTATAATTTTTAAAAATTTTAAGAAATTAATTAATT
47653432 GCTTACGTAT
Statistics
Matches: 108, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
125 35 0.32
126 73 0.68
ACGTcount: A:0.51, C:0.05, G:0.04, T:0.40
Consensus pattern (126 bp):
AAAAAATCTAAAAACTTAAAAATTATCAAAAATTTAAAAAAGTGTAAAATTTATTTAATACTAAA
AATTATAATAATATTCTATAATTTTTAAAAATTTTAAGAAATTAATTAATTTTTTACCTAT
Found at i:47663179 original size:168 final size:168
Alignment explanation
Indices: 47662901--47663222 Score: 644
Period size: 168 Copynumber: 1.9 Consensus size: 168
47662891 AGTTTTATTG
47662901 TTATTATTAAATTGAATTATGATCACAAAGTTCAGTCATTTATGCAAACACATAGCAAACTTATA
1 TTATTATTAAATTGAATTATGATCACAAAGTTCAGTCATTTATGCAAACACATAGCAAACTTATA
47662966 GCTGTAAATGGAACAAATTTCTATCTCTTTCACCTAAATTATGTACTTTTCACTTGTTTATGAAC
66 GCTGTAAATGGAACAAATTTCTATCTCTTTCACCTAAATTATGTACTTTTCACTTGTTTATGAAC
47663031 AAAAACAACAACCCATATCCATGTTCACAAAAATTTGT
131 AAAAACAACAACCCATATCCATGTTCACAAAAATTTGT
47663069 TTATTATTAAATTGAATTATGATCACAAAGTTCAGTCATTTATGCAAACACATAGCAAACTTATA
1 TTATTATTAAATTGAATTATGATCACAAAGTTCAGTCATTTATGCAAACACATAGCAAACTTATA
47663134 GCTGTAAATGGAACAAATTTCTATCTCTTTCACCTAAATTATGTACTTTTCACTTGTTTATGAAC
66 GCTGTAAATGGAACAAATTTCTATCTCTTTCACCTAAATTATGTACTTTTCACTTGTTTATGAAC
47663199 AAAAACAACAACCCATATCCATGT
131 AAAAACAACAACCCATATCCATGT
47663223 AAGAGAAGGG
Statistics
Matches: 154, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
168 154 1.00
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.35
Consensus pattern (168 bp):
TTATTATTAAATTGAATTATGATCACAAAGTTCAGTCATTTATGCAAACACATAGCAAACTTATA
GCTGTAAATGGAACAAATTTCTATCTCTTTCACCTAAATTATGTACTTTTCACTTGTTTATGAAC
AAAAACAACAACCCATATCCATGTTCACAAAAATTTGT
Found at i:47664265 original size:9 final size:11
Alignment explanation
Indices: 47664215--47664275 Score: 97
Period size: 11 Copynumber: 5.5 Consensus size: 11
47664205 CAACTAAATC
47664215 ATTTCTCTC-A
1 ATTTCTCTCAA
*
47664225 ATTTCTCTCTA
1 ATTTCTCTCAA
47664236 ATATTCTCTCAA
1 AT-TTCTCTCAA
47664248 ATTTCTCTCAA
1 ATTTCTCTCAA
47664259 ATTTCTCTCAA
1 ATTTCTCTCAA
47664270 ATTTCT
1 ATTTCT
47664276 ATTTAAAAGA
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
10 9 0.19
11 29 0.60
12 10 0.21
ACGTcount: A:0.25, C:0.26, G:0.00, T:0.49
Consensus pattern (11 bp):
ATTTCTCTCAA
Found at i:47670022 original size:126 final size:125
Alignment explanation
Indices: 47669797--47670208 Score: 657
Period size: 126 Copynumber: 3.3 Consensus size: 125
47669787 AAACATGCGC
* *
47669797 TACTGTAGCAAAAGC-GCGTCCACTTGGGAGCTTCTTTCAGTACTTCTACTGACAAAGCATCCTG
1 TACTGTAGCAAAA-CTGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCTG
** *
47669861 CTTAAAGAATTTTTGACAGTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAGGAGT
65 CTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTT-AGGAGT
47669923 TACTGTAGCAAAACTGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCTGC
1 TACTGTAGCAAAACTGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCTGC
* *
47669988 TTAAAGCGTTTTTGACACTATTTGCTCAAAAACGTCTACTCGAAATTATTTTTTTAGGAGC
66 TTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTA-TTTTTTAGGAGT
* * *
47670049 TACTGTAGCAAAACCGCATCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATTCTGC
1 TACTGTAGCAAAACTGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCTGC
47670114 TTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTAGGA-T
66 TTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTAGGAGT
* * *
47670173 CTACTGTAGCAAAAGTGCGTCCACATAGGAGCTTCT
1 -TACTGTAGCAAAACTGCGTCCACGTGGGAGCTTCT
47670209 GTAAATTAAC
Statistics
Matches: 266, Mismatches: 17, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
125 41 0.15
126 219 0.82
127 6 0.02
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (125 bp):
TACTGTAGCAAAACTGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCTGC
TTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTAGGAGT
Found at i:47670362 original size:97 final size:94
Alignment explanation
Indices: 47670243--47670524 Score: 300
Period size: 97 Copynumber: 2.9 Consensus size: 94
47670233 AGTAACCTTA
* * * *
47670243 AACCCCAAACCCCAATTTATTTGAGTTTTTACTTCAAAACCCTAAACATTAAACCCTAATCTAAT
1 AACCCTAAACCCTAATTTATTTGA-TTTTT-CTTAAAAACCATAAACATTAAACCCTAATCTAAT
47670308 TTTATAAAAAATTATAATTAATTTACTCAAGT
64 TTT-TAAAAAATTATAATTAATTTACTCAAGT
* * *
47670340 AACCCTGAACCCTAATTTATTTGATTTTTCCTTAAAAACCTTTAAC-TCTAAACCCTAATCTATT
1 AACCCTAAACCCTAATTTATTTGATTTTT-CTTAAAAACCATAAACAT-TAAACCCTAATCTA--
* * *
47670404 TTTTTTTAAAAAAAT-TAATTAAATTACTCAAGT
62 -ATTTTTAAAAAATTATAATTAATTTACTCAAGT
* * ** *
47670437 AACCCTAAACCCTAATTTAATTGATTTTTCTTAAAAAAACAATAAACAAGAAA-CCTAATCCAAT
1 AACCCTAAACCCTAATTTATTTGATTTTTCTT--AAAAACCATAAACATTAAACCCTAATCTAAT
* *
47670501 TTTGAAAAATTTATAATTAATTTA
64 TTTTAAAAAATTATAATTAATTTA
47670525 ATTGACAAAC
Statistics
Matches: 154, Mismatches: 23, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
94 10 0.06
95 11 0.07
96 35 0.23
97 73 0.47
98 21 0.14
99 4 0.03
ACGTcount: A:0.42, C:0.18, G:0.03, T:0.37
Consensus pattern (94 bp):
AACCCTAAACCCTAATTTATTTGATTTTTCTTAAAAACCATAAACATTAAACCCTAATCTAATTT
TTAAAAAATTATAATTAATTTACTCAAGT
Found at i:47670802 original size:14 final size:14
Alignment explanation
Indices: 47670783--47670810 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
47670773 CCCCTGACAT
47670783 CGCGCTGACGTGGA
1 CGCGCTGACGTGGA
47670797 CGCGCTGACGTGGA
1 CGCGCTGACGTGGA
47670811 AATAGGGCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.29, G:0.43, T:0.14
Consensus pattern (14 bp):
CGCGCTGACGTGGA
Found at i:47673375 original size:18 final size:18
Alignment explanation
Indices: 47673352--47673416 Score: 69
Period size: 18 Copynumber: 3.6 Consensus size: 18
47673342 AGGACTGAAC
*
47673352 TTGGCGAACTCTCCCATA
1 TTGGCGAACTCTCCAATA
47673370 TTGGCGAA-TCATCCAATA
1 TTGGCGAACTC-TCCAATA
* **
47673388 TTGGTGAACTCTATAATA
1 TTGGCGAACTCTCCAATA
*
47673406 TTGGCGGACTC
1 TTGGCGAACTC
47673417 ACAAAAAGTG
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
17 2 0.05
18 35 0.90
19 2 0.05
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (18 bp):
TTGGCGAACTCTCCAATA
Found at i:47673553 original size:24 final size:24
Alignment explanation
Indices: 47673526--47673573 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
47673516 TAAAACTTTA
47673526 TTAGCATA-ATATATTTGTTATTTC
1 TTAGCATACA-ATATTTGTTATTTC
*
47673550 TTAGCATACAATCTTTGTTATTTC
1 TTAGCATACAATATTTGTTATTTC
47673574 CTTATGTAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 21 0.95
25 1 0.05
ACGTcount: A:0.27, C:0.12, G:0.08, T:0.52
Consensus pattern (24 bp):
TTAGCATACAATATTTGTTATTTC
Found at i:47678009 original size:24 final size:24
Alignment explanation
Indices: 47677980--47678026 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
47677970 CATTTTTAGA
47677980 ATATTTAG-AATTTATTAGCATAAT
1 ATATTT-GTAATTTATTAGCATAAT
*
47678004 ATATTTGTTATTTATTAGCATAA
1 ATATTTGTAATTTATTAGCATAA
47678027 AATCTTTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.04, G:0.09, T:0.49
Consensus pattern (24 bp):
ATATTTGTAATTTATTAGCATAAT
Found at i:47700871 original size:13 final size:14
Alignment explanation
Indices: 47700853--47700894 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
47700843 TTTTAATTTT
47700853 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
47700866 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
47700881 ATTTTAAATAATAT
1 ATTTT-AATAATAT
47700895 TCTTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:47700879 original size:16 final size:16
Alignment explanation
Indices: 47700857--47700893 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
47700847 AATTTTATTT
47700857 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
47700874 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
47700889 TAATA
1 TAATA
47700894 TTCTTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:47703640 original size:10 final size:10
Alignment explanation
Indices: 47703618--47703663 Score: 51
Period size: 10 Copynumber: 4.8 Consensus size: 10
47703608 AAAAGTGATC
*
47703618 GAAAAA-ATG
1 GAAAAATATA
47703627 GAAAAATATA
1 GAAAAATATA
*
47703637 GAAAAATA-C
1 GAAAAATATA
*
47703646 GAAAAATAAA
1 GAAAAATATA
47703656 GAAAAATA
1 GAAAAATA
47703664 AAAAATTTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
9 14 0.44
10 18 0.56
ACGTcount: A:0.72, C:0.02, G:0.13, T:0.13
Consensus pattern (10 bp):
GAAAAATATA
Found at i:47703642 original size:19 final size:20
Alignment explanation
Indices: 47703618--47703661 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
47703608 AAAAGTGATC
* *
47703618 GAAAAAAT-GGAAAAATATA
1 GAAAAAATACGAAAAATAAA
47703637 G-AAAAATACGAAAAATAAA
1 GAAAAAATACGAAAAATAAA
47703656 GAAAAA
1 GAAAAA
47703662 TAAAAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 6 0.29
19 11 0.52
20 4 0.19
ACGTcount: A:0.73, C:0.02, G:0.14, T:0.11
Consensus pattern (20 bp):
GAAAAAATACGAAAAATAAA
Found at i:47703662 original size:19 final size:19
Alignment explanation
Indices: 47703627--47703663 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
47703617 CGAAAAAATG
*
47703627 GAAAAATATAGAAAAATAC
1 GAAAAATAAAGAAAAATAC
47703646 GAAAAATAAAGAAAAATA
1 GAAAAATAAAGAAAAATA
47703664 AAAAATTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.73, C:0.03, G:0.11, T:0.14
Consensus pattern (19 bp):
GAAAAATAAAGAAAAATAC
Found at i:47703664 original size:10 final size:10
Alignment explanation
Indices: 47703627--47703665 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
47703617 CGAAAAAATG
*
47703627 GAAAAATATA
1 GAAAAATAAA
*
47703637 GAAAAAT-AC
1 GAAAAATAAA
47703646 GAAAAATAAA
1 GAAAAATAAA
47703656 GAAAAATAAA
1 GAAAAATAAA
47703666 AAATTTTGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
9 7 0.28
10 18 0.72
ACGTcount: A:0.74, C:0.03, G:0.10, T:0.13
Consensus pattern (10 bp):
GAAAAATAAA
Found at i:47704102 original size:10 final size:9
Alignment explanation
Indices: 47704087--47704128 Score: 50
Period size: 10 Copynumber: 4.6 Consensus size: 9
47704077 TCGAAAAATG
47704087 GAAAAATATA
1 GAAAAATA-A
*
47704097 GAAAAATAC
1 GAAAAATAA
47704106 GAAAAATAAA
1 GAAAAAT-AA
47704116 GAAAAATAA
1 GAAAAATAA
47704125 -AAAA
1 GAAAA
47704129 TTTTGTGGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
8 4 0.14
9 9 0.31
10 16 0.55
ACGTcount: A:0.76, C:0.02, G:0.10, T:0.12
Consensus pattern (9 bp):
GAAAAATAA
Found at i:47704102 original size:19 final size:19
Alignment explanation
Indices: 47704087--47704123 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
47704077 TCGAAAAATG
*
47704087 GAAAAATATAGAAAAATAC
1 GAAAAATAAAGAAAAATAC
47704106 GAAAAATAAAGAAAAATA
1 GAAAAATAAAGAAAAATA
47704124 AAAAATTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.73, C:0.03, G:0.11, T:0.14
Consensus pattern (19 bp):
GAAAAATAAAGAAAAATAC
Found at i:47711591 original size:79 final size:82
Alignment explanation
Indices: 47711474--47711658 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
47711464 GCTACTCGTT
* * *
47711474 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCAGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
47711537 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
47711554 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
47711617 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
47711634 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47711659 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:47711658 original size:40 final size:40
Alignment explanation
Indices: 47711455--47711658 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
47711445 CGGAATTTAA
** *
47711455 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
47711495 CCGGTTATAGTAACTCGCACAATTGCCTTCAGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
47711535 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
47711574 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
47711614 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
47711654 CCGGA
1 CCGGA
47711659 CATCATTCAA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 90 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:47719517 original size:79 final size:82
Alignment explanation
Indices: 47719406--47719590 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
47719396 GCTACTCGTT
* * *
47719406 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
47719469 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
47719486 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
47719549 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
47719566 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47719591 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:47719590 original size:40 final size:40
Alignment explanation
Indices: 47719387--47719590 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
47719377 CGGAATTTAA
** *
47719387 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
47719427 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
47719467 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
47719506 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
47719546 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
47719586 CCGGA
1 CCGGA
47719591 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:47737536 original size:60 final size:54
Alignment explanation
Indices: 47737458--47737605 Score: 154
Period size: 54 Copynumber: 2.6 Consensus size: 54
47737448 CATCTTCAGA
* * * *
47737458 TGAAGTGTTTTCTTCATCAAAATTATGACTAGTGACTTTTATGTCTTCATCCTGATCCGT
1 TGAAGTTTTTTCTTCATCAAAATTATAACTAGTAACCTTTA-----T-ATCCTGATCCGT
* *
47737518 TGAAGTTTTTTCTTCATC-AGATTGATAACTAGTAACCTTTATATCCTGATCTGT
1 TGAAGTTTTTTCTTCATCAAAATT-ATAACTAGTAACCTTTATATCCTGATCCGT
* *
47737572 TGAAGTTTTTTCTTCATCAGATTTATAACTAGTA
1 TGAAGTTTTTTCTTCATCAAAATTATAACTAGTA
47737606 GCTTCTAAGT
Statistics
Matches: 77, Mismatches: 9, Indels: 10
0.80 0.09 0.10
Matches are distributed among these distances:
54 39 0.51
55 3 0.04
59 4 0.05
60 31 0.40
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.45
Consensus pattern (54 bp):
TGAAGTTTTTTCTTCATCAAAATTATAACTAGTAACCTTTATATCCTGATCCGT
Found at i:47739371 original size:30 final size:31
Alignment explanation
Indices: 47739331--47739400 Score: 99
Period size: 30 Copynumber: 2.3 Consensus size: 31
47739321 AGCTGAAATA
*
47739331 AGCTCCATTTCAGCTCAATGAAC-TTGAA-TC
1 AGCTCAATTTCAGCTCAAT-AACTTTGAATTC
*
47739361 AGCTCAATTTCAGCTCAATAACTTTTAATTC
1 AGCTCAATTTCAGCTCAATAACTTTGAATTC
47739392 AGCTCAATT
1 AGCTCAATT
47739401 AATTTTTGTT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
29 3 0.08
30 22 0.61
31 11 0.31
ACGTcount: A:0.31, C:0.24, G:0.10, T:0.34
Consensus pattern (31 bp):
AGCTCAATTTCAGCTCAATAACTTTGAATTC
Found at i:47740429 original size:25 final size:25
Alignment explanation
Indices: 47740396--47740457 Score: 74
Period size: 23 Copynumber: 2.6 Consensus size: 25
47740386 AATTTGGTTT
* ** *
47740396 ATTTTGTACCAAAAAATTCCTTACC
1 ATTTCGTACCAAAAAACCCCATACC
47740421 ATTTCGTACC--AAAACCCCATACC
1 ATTTCGTACCAAAAAACCCCATACC
47740444 ATTTCGTACCAAAA
1 ATTTCGTACCAAAA
47740458 CCAACTCTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
23 20 0.65
25 11 0.35
ACGTcount: A:0.37, C:0.29, G:0.05, T:0.29
Consensus pattern (25 bp):
ATTTCGTACCAAAAAACCCCATACC
Found at i:47745689 original size:27 final size:27
Alignment explanation
Indices: 47745658--47745740 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 27
47745648 CAAAACATTG
*
47745658 ATGACGCAAGCAGTTATGGAAGCAACC
1 ATGACACAAGCAGTTATGGAAGCAACC
* *
47745685 CTGACACAAACAGTTATGGAAGCAACC
1 ATGACACAAGCAGTTATGGAAGCAACC
* * *
47745712 ATGACAAAAGCAGTGATGGAAGCAGCC
1 ATGACACAAGCAGTTATGGAAGCAACC
47745739 AT
1 AT
47745741 TAACTCAAGC
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.40, C:0.22, G:0.24, T:0.14
Consensus pattern (27 bp):
ATGACACAAGCAGTTATGGAAGCAACC
Found at i:47747022 original size:54 final size:54
Alignment explanation
Indices: 47746957--47747063 Score: 160
Period size: 54 Copynumber: 2.0 Consensus size: 54
47746947 ACAGAAAACT
* * * *
47746957 TAAAAGCTACTAGTTATAAATTTGATGAAGAAAAAACTTCAATAGATCAGGATA
1 TAAAAGCTACTAGTTATAAATCTGATAAAGAAAAAACTTCAACAAATCAGGATA
* *
47747011 TAAAAGTTACTAGTTATCAATCTGATAAAGAAAAAACTTCAACAAATCAGGAT
1 TAAAAGCTACTAGTTATAAATCTGATAAAGAAAAAACTTCAACAAATCAGGAT
47747064 GAAGGCATAA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.49, C:0.11, G:0.13, T:0.27
Consensus pattern (54 bp):
TAAAAGCTACTAGTTATAAATCTGATAAAGAAAAAACTTCAACAAATCAGGATA
Found at i:47753385 original size:71 final size:72
Alignment explanation
Indices: 47753260--47753399 Score: 169
Period size: 71 Copynumber: 2.0 Consensus size: 72
47753250 TAGCAACATG
* * * * *
47753260 AAAAGAAAGAAATCCACATACCAACAACAAAGATTGGCAACGTGAAAGTCATCATCAAATCCATG
1 AAAAGAAAGAAATCCAAATACAAACAAAAAAGATTGGCAACGTGAAAGTCATCATCAAAACAATG
47753325 ATGAAAC
66 ATGAAAC
* * *
47753332 AAAAG-AAGAAATCCAAATACAAACAAAAAAG-TCTTGCAATGTGGAAG-CTATCATCAAAACAA
1 AAAAGAAAGAAATCCAAATACAAACAAAAAAGAT-TGGCAACGTGAAAGTC-ATCATCAAAACAA
47753394 TGATGA
64 TGATGA
47753400 CGCAAGCAGT
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
70 2 0.03
71 51 0.88
72 5 0.09
ACGTcount: A:0.51, C:0.18, G:0.14, T:0.16
Consensus pattern (72 bp):
AAAAGAAAGAAATCCAAATACAAACAAAAAAGATTGGCAACGTGAAAGTCATCATCAAAACAATG
ATGAAAC
Found at i:47754172 original size:2 final size:2
Alignment explanation
Indices: 47754167--47754191 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
47754157 GAATATACAT
47754167 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
47754192 TGATGACAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:47766742 original size:20 final size:20
Alignment explanation
Indices: 47766717--47766789 Score: 60
Period size: 20 Copynumber: 3.5 Consensus size: 20
47766707 CCCTCATGTT
47766717 CTTTATATTATTTTGTTTAA
1 CTTTATATTATTTTGTTTAA
* *
47766737 CTTTATTTTATAATT-TTTATA
1 CTTTATATTAT-TTTGTTTA-A
*
47766758 -TTTTTATATATTTTGTTTTAA
1 CTTTATAT-TATTTTG-TTTAA
*
47766779 CTTTATTTTAT
1 CTTTATATTAT
47766790 AATTTTTTAT
Statistics
Matches: 40, Mismatches: 7, Indels: 11
0.69 0.12 0.19
Matches are distributed among these distances:
20 21 0.52
21 10 0.25
22 9 0.22
ACGTcount: A:0.25, C:0.04, G:0.03, T:0.68
Consensus pattern (20 bp):
CTTTATATTATTTTGTTTAA
Found at i:47767544 original size:10 final size:10
Alignment explanation
Indices: 47767510--47767544 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
47767500 TTTATATATA
*
47767510 TTTTTAGAAG
1 TTTTTAGAAT
47767520 TTTTTAGAAT
1 TTTTTAGAAT
47767530 TTTTTAGAAT
1 TTTTTAGAAT
47767540 TTTTT
1 TTTTT
47767545 TAAAATATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.63
Consensus pattern (10 bp):
TTTTTAGAAT
Found at i:47767596 original size:19 final size:19
Alignment explanation
Indices: 47767562--47767625 Score: 85
Period size: 20 Copynumber: 3.4 Consensus size: 19
47767552 TAAAATTTGA
*
47767562 AAATTTTATAAA-TATTTT
1 AAATTTTAAAAATTATTTT
*
47767580 GAATTTTAAAAATTATTTT
1 AAATTTTAAAAATTATTTT
*
47767599 AAATTTTTGAAAATTATTTT
1 AAA-TTTTAAAAATTATTTT
47767619 AAATTTT
1 AAATTTT
47767626 TTTTGTAATT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
18 10 0.25
19 12 0.30
20 18 0.45
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (19 bp):
AAATTTTAAAAATTATTTT
Found at i:47768356 original size:10 final size:10
Alignment explanation
Indices: 47768337--47768401 Score: 60
Period size: 10 Copynumber: 6.3 Consensus size: 10
47768327 TAATATAAAT
47768337 AAAATTATTA
1 AAAATTATTA
*
47768347 AAACTTATTA
1 AAAATTATTA
*
47768357 TAAAAGTATTA
1 -AAAATTATTA
47768368 AAAATTATTA
1 AAAATTATTA
*
47768378 TAAAA-TATAAA
1 -AAAATTAT-TA
*
47768389 AAAATTACTA
1 AAAATTATTA
47768399 AAA
1 AAA
47768402 TTTTATAAAG
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
10 29 0.66
11 15 0.34
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.34
Consensus pattern (10 bp):
AAAATTATTA
Found at i:47768359 original size:21 final size:21
Alignment explanation
Indices: 47768313--47768403 Score: 82
Period size: 21 Copynumber: 4.4 Consensus size: 21
47768303 AGAATCAATC
* *
47768313 ATAAATATTATTAATAA-TATAA
1 ATAAA-ATTATTAAAAATTAT-T
*
47768335 ATAAAATTATTAAAACTTATT
1 ATAAAATTATTAAAAATTATT
*
47768356 ATAAAAGTATTAAAAATTATT
1 ATAAAATTATTAAAAATTATT
*
47768377 ATAAAA-TA-TAAAAA-AATT
1 ATAAAATTATTAAAAATTATT
47768395 ACTAAAATT
1 A-TAAAATT
47768404 TTATAAAGCT
Statistics
Matches: 60, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
18 4 0.07
19 11 0.18
20 3 0.05
21 34 0.57
22 8 0.13
ACGTcount: A:0.59, C:0.02, G:0.01, T:0.37
Consensus pattern (21 bp):
ATAAAATTATTAAAAATTATT
Found at i:47768401 original size:31 final size:30
Alignment explanation
Indices: 47768368--47768480 Score: 94
Period size: 29 Copynumber: 3.8 Consensus size: 30
47768358 AAAAGTATTA
47768368 AAAATTATTATAAAATATAAAAAAATTACT
1 AAAATTATTATAAAATATAAAAAAATTACT
* *
47768398 AAAATT-TTATAAAGCTTAGAAAAAAATTA--
1 AAAATTATTATAAA--ATATAAAAAAATTACT
* *
47768427 AAAATCTA-TAAACAAATATAGAAAAATT-CT
1 AAAAT-TATTATA-AAATATAAAAAAATTACT
47768457 AAAA-TATTATAAAAATCATAAAAA
1 AAAATTATTAT-AAAAT-ATAAAAA
47768481 GAATAAGATA
Statistics
Matches: 65, Mismatches: 8, Indels: 20
0.70 0.09 0.22
Matches are distributed among these distances:
28 2 0.03
29 28 0.43
30 21 0.32
31 14 0.22
ACGTcount: A:0.63, C:0.05, G:0.03, T:0.29
Consensus pattern (30 bp):
AAAATTATTATAAAATATAAAAAAATTACT
Found at i:47768480 original size:59 final size:59
Alignment explanation
Indices: 47768364--47768480 Score: 139
Period size: 59 Copynumber: 2.0 Consensus size: 59
47768354 TTATAAAAGT
* * ** *
47768364 ATTAAAAATTATTATAAAATATAAAAAAATTACTAAAATTTTATAAAGCTTAGAAAAAA
1 ATTAAAAATTATTAAAAAATATAAAAAAATTACTAAAATATTATAAAAATCAGAAAAAA
* *
47768423 ATTAAAAATCTA-TAAACAAATATAGAAAAATT-CTAAAATATTATAAAAATCATAAAAA
1 ATTAAAAAT-TATTAAA-AAATATAAAAAAATTACTAAAATATTATAAAAATCAGAAAAA
47768481 GAATAAGATA
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
59 33 0.67
60 16 0.33
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (59 bp):
ATTAAAAATTATTAAAAAATATAAAAAAATTACTAAAATATTATAAAAATCAGAAAAAA
Found at i:47768779 original size:27 final size:26
Alignment explanation
Indices: 47768744--47768819 Score: 80
Period size: 28 Copynumber: 2.8 Consensus size: 26
47768734 TTTATATGCC
47768744 TTATAATTTTTAATAATTTTTTGTATTT
1 TTAT-ATTTTTAATAATTTTTT-TATTT
**
47768772 TTATATTTTATAATAAATTTAATTATTT
1 TTATATTTT-TAAT-AATTTTTTTATTT
* *
47768800 TTATATTATTAATAAATTTT
1 TTATATTTTTAATAATTTTT
47768820 AAATTTTTTC
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
26 4 0.10
27 9 0.22
28 21 0.52
29 6 0.15
ACGTcount: A:0.36, C:0.00, G:0.01, T:0.63
Consensus pattern (26 bp):
TTATATTTTTAATAATTTTTTTATTT
Found at i:47768820 original size:28 final size:27
Alignment explanation
Indices: 47768767--47768839 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 27
47768757 TAATTTTTTG
47768767 TATTTTTATATTTTATAATAAATTT-AAT
1 TATTTTTATA-TTT-TAATAAATTTAAAT
47768795 TATTTTTATATTATTAATAAATTTTAAAT
1 TATTTTTATATT-TTAATAAA-TTTAAAT
47768824 T-TTTTCTATATTTTAA
1 TATTTT-TATATTTTAA
47768840 AAAAATCTAT
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
27 9 0.22
28 22 0.54
29 10 0.24
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (27 bp):
TATTTTTATATTTTAATAAATTTAAAT
Found at i:47775619 original size:4 final size:4
Alignment explanation
Indices: 47775610--47775656 Score: 85
Period size: 4 Copynumber: 11.8 Consensus size: 4
47775600 ATGAGTGATA
*
47775610 TATG TATG TATG TATG TATG TATG TATA TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
47775657 TTGAATTGTA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:47788930 original size:15 final size:16
Alignment explanation
Indices: 47788910--47788944 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
47788900 TTAATGATAC
47788910 TTAAGG-TTAGGTTAA
1 TTAAGGTTTAGGTTAA
*
47788925 TTAAGGTTTAGTTTAA
1 TTAAGGTTTAGGTTAA
47788941 TTAA
1 TTAA
47788945 TTAAGGTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46
Consensus pattern (16 bp):
TTAAGGTTTAGGTTAA
Found at i:47788946 original size:20 final size:18
Alignment explanation
Indices: 47788921--47788965 Score: 65
Period size: 20 Copynumber: 2.4 Consensus size: 18
47788911 TAAGGTTAGG
47788921 TTAATTAAGGTTTAGTTTAA
1 TTAATTAAGGTTTA--TTAA
47788941 TTAATTAAGGTTTATTAA
1 TTAATTAAGGTTTATTAA
47788959 TT-ATTAA
1 TTAATTAA
47788966 ACTAAGTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.20
18 6 0.24
20 14 0.56
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (18 bp):
TTAATTAAGGTTTATTAA
Found at i:47792217 original size:2 final size:2
Alignment explanation
Indices: 47792210--47792238 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
47792200 AATGTTTATA
47792210 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
47792239 TTTGGTAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:47792324 original size:21 final size:22
Alignment explanation
Indices: 47792300--47792340 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
47792290 ATGAAATGGT
47792300 ATGGCAAAAAAG-ATGATTTGG
1 ATGGCAAAAAAGCATGATTTGG
* *
47792321 ATGGCTAAAAGGCATGATTT
1 ATGGCAAAAAAGCATGATTT
47792341 ACAAGTTAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.39, C:0.07, G:0.27, T:0.27
Consensus pattern (22 bp):
ATGGCAAAAAAGCATGATTTGG
Found at i:47807783 original size:19 final size:20
Alignment explanation
Indices: 47807759--47807802 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
47807749 ATACAGACAT
*
47807759 GTGTCT-TGGACACATAGCC
1 GTGTCTGTGGACACATAGAC
*
47807778 GTGTCTGGTGGGCACATAGAC
1 GTGTCT-GTGGACACATAGAC
47807799 GTGT
1 GTGT
47807803 AAGACCCCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 6 0.29
21 15 0.71
ACGTcount: A:0.18, C:0.20, G:0.34, T:0.27
Consensus pattern (20 bp):
GTGTCTGTGGACACATAGAC
Found at i:47810763 original size:25 final size:25
Alignment explanation
Indices: 47810718--47810837 Score: 72
Period size: 25 Copynumber: 4.9 Consensus size: 25
47810708 TCGAGCCACG
*
47810718 TAACTGGAAGCTCATATGAGCCATA
1 TAACAGGAAGCTCATATGAGCCATA
*
47810743 TAACAGGAAGCTCTTGA-GAGCCA-A
1 TAACAGGAAGCTCAT-ATGAGCCATA
* * * *
47810767 TTATCGGGAAGGTCAGATGAGCCATA
1 -TAACAGGAAGCTCATATGAGCCATA
* *
47810793 -AACTA-GAAGCTCA-AGAGAGCCAAA
1 TAAC-AGGAAGCTCATA-TGAGCCATA
* *
47810817 T-TCAGGAAGCTCATAAGAGCC
1 TAACAGGAAGCTCATATGAGCC
47810838 GTAATTGGGA
Statistics
Matches: 73, Mismatches: 13, Indels: 19
0.70 0.12 0.18
Matches are distributed among these distances:
23 2 0.03
24 33 0.45
25 36 0.49
26 2 0.03
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.18
Consensus pattern (25 bp):
TAACAGGAAGCTCATATGAGCCATA
Found at i:47810764 original size:50 final size:49
Alignment explanation
Indices: 47810710--47810815 Score: 115
Period size: 50 Copynumber: 2.1 Consensus size: 49
47810700 AAACTCTTTC
* * * **
47810710 GAGCCACGTAACTGGAAGCTCATATGAGCCATATAAC-AGGAAGCTCTTGA
1 GAGCCAAGTAACGGGAAGCTCAGATGAGCCATA-AACTA-GAAGCTCAAGA
* * *
47810760 GAGCCAATTATCGGGAAGGTCAGATGAGCCATAAACTAGAAGCTCAAGA
1 GAGCCAAGTAACGGGAAGCTCAGATGAGCCATAAACTAGAAGCTCAAGA
47810809 GAGCCAA
1 GAGCCAA
47810816 ATTCAGGAAG
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
49 19 0.40
50 28 0.60
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (49 bp):
GAGCCAAGTAACGGGAAGCTCAGATGAGCCATAAACTAGAAGCTCAAGA
Found at i:47810825 original size:24 final size:23
Alignment explanation
Indices: 47810798--47810865 Score: 84
Period size: 24 Copynumber: 2.9 Consensus size: 23
47810788 CCATAAACTA
47810798 GAAGCTCA-AGAGAGCCAAATTCAG
1 GAAGCTCATA-AGAGCCAAATT-AG
* *
47810822 GAAGCTCATAAGAGCCGTAATTGG
1 GAAGCTCATAAGAGCC-AAATTAG
47810846 GAAGCTCATAAGAGCCAAAT
1 GAAGCTCATAAGAGCCAAAT
47810866 ACCGAGACGC
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
23 3 0.08
24 31 0.79
25 5 0.13
ACGTcount: A:0.40, C:0.19, G:0.25, T:0.16
Consensus pattern (23 bp):
GAAGCTCATAAGAGCCAAATTAG
Found at i:47812960 original size:54 final size:54
Alignment explanation
Indices: 47812900--47813005 Score: 178
Period size: 54 Copynumber: 2.0 Consensus size: 54
47812890 TAAAGATTCT
* *
47812900 CAAAGCTTCTATATAATTAAAGATTCTGGGTTTTTATGGGA-TAACCTTCTTTCC
1 CAAAGCTTCTATATAATTAAAGATTCTGGGTTTCTAT-GGACTAACCTCCTTTCC
47812954 CAAAGCTTCTATATAATTAAAGATTCTGGGTTTCTATGGACTAACCTCCTTT
1 CAAAGCTTCTATATAATTAAAGATTCTGGGTTTCTATGGACTAACCTCCTTT
47813006 AGTTTAACTA
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
53 3 0.06
54 46 0.94
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (54 bp):
CAAAGCTTCTATATAATTAAAGATTCTGGGTTTCTATGGACTAACCTCCTTTCC
Found at i:47817407 original size:54 final size:54
Alignment explanation
Indices: 47817347--47817456 Score: 195
Period size: 54 Copynumber: 2.0 Consensus size: 54
47817337 AGAGTAAAGA
*
47817347 TTCTCAAAGCTTCTATATAATTAAAGATTCTGGGTTTTTATGGGA-TAACCTCCT
1 TTCTCAAAGCTTCTATATAATTAAAGATTCTGGGTTTCTAT-GGACTAACCTCCT
47817401 TTCTCAAAGCTTCTATATAATTAAAGATTCTGGGTTTCTATGGACTAACCTCCT
1 TTCTCAAAGCTTCTATATAATTAAAGATTCTGGGTTTCTATGGACTAACCTCCT
47817455 TT
1 TT
47817457 AGTTTAACTG
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
53 3 0.06
54 51 0.94
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (54 bp):
TTCTCAAAGCTTCTATATAATTAAAGATTCTGGGTTTCTATGGACTAACCTCCT
Found at i:47847831 original size:26 final size:26
Alignment explanation
Indices: 47847797--47847856 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
47847787 CATTTGGACC
* *
47847797 CACAGCTCGTGTGAATAGGCCCATTT
1 CACAACTCGTGTGAACAGGCCCATTT
*
47847823 CACAACTCGTGTGAGCAGGCCCATTT
1 CACAACTCGTGTGAACAGGCCCATTT
47847849 CACAACTC
1 CACAACTC
47847857 TTGTAAGCAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (26 bp):
CACAACTCGTGTGAACAGGCCCATTT
Found at i:47847865 original size:26 final size:26
Alignment explanation
Indices: 47847813--47847865 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
47847803 TCGTGTGAAT
*
47847813 AGGCCCATTTCACAACTCGTGTGAGC
1 AGGCCCATTTCACAACTCGTGTAAGC
*
47847839 AGGCCCATTTCACAACTCTTGTAAGC
1 AGGCCCATTTCACAACTCGTGTAAGC
47847865 A
1 A
47847866 CTATTAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
AGGCCCATTTCACAACTCGTGTAAGC
Found at i:47852143 original size:33 final size:33
Alignment explanation
Indices: 47852101--47852167 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
47852091 GAACTTAGAA
47852101 TGCCCATCACTTGAAAAGGTACTATGTATAGTT
1 TGCCCATCACTTGAAAAGGTACTATGTATAGTT
47852134 TGCCCATCACTTGAAAAGGTACTATGTATAGTT
1 TGCCCATCACTTGAAAAGGTACTATGTATAGTT
47852167 T
1 T
47852168 TTTACTCATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (33 bp):
TGCCCATCACTTGAAAAGGTACTATGTATAGTT
Found at i:47852596 original size:144 final size:144
Alignment explanation
Indices: 47852337--47852841 Score: 548
Period size: 144 Copynumber: 3.6 Consensus size: 144
47852327 CAACTCTGAA
* * * * * * * * *
47852337 ACAGCTTGCGGACCTATGCTCCTAGTTGATGTTTAAAGCTTAGCTGAGTTATGCTTACAGCCTTT
1 ACAGCTCGTGGACCTACGCTCCTAGTTAATGTTTAAAGGTTAGTTGAGTTATGCTCACAACCTTC
* * * *
47852402 ATTTATTTTTGTTAG-TTGAGTTAAGCTCGCAACTCCGAAAAAACTCACAAACCTACGCTCCCAG
66 ATTTATTTTAGTTAGCTAG-GTTAAGCTCGCAACTTCGAAACAACTCACAAACCTACGCTCCCAG
47852466 CTAATAAAC-TCTGAC
130 CTAATAAACTTC-GAC
* * * * *
47852481 ACAGCTCGTGGACTTACGGTCCTAGTTGATGTTTAAAGGTTAGATGAGTTATGCTCACAACATTC
1 ACAGCTCGTGGACCTACGCTCCTAGTTAATGTTTAAAGGTTAGTTGAGTTATGCTCACAACCTTC
* *
47852546 ATTTATTTTAGTTAGCTAGGTTAAGCTCGCAACTTCGAAACAACTTACAAACCTACGCTCTCAGC
66 ATTTATTTTAGTTAGCTAGGTTAAGCTCGCAACTTCGAAACAACTCACAAACCTACGCTCCCAGC
47852611 TAATAAACTTCGAC
131 TAATAAACTTCGAC
* * * *
47852625 ACAACTCATGGACCTGCGCTCCTAGTTAATGTTTAAAGGTTAGTTGAATTATGCTCACAACCTTC
1 ACAGCTCGTGGACCTACGCTCCTAGTTAATGTTTAAAGGTTAGTTGAGTTATGCTCACAACCTTC
* * * * * ** * *
47852690 ATTTA-TTT-G--AGTTA-GTTGAG-TTG-AGC-TCGAAAC-TCTGGCTAACCTACCCTCCCAGC
66 ATTTATTTTAGTTAGCTAGGTTAAGCTCGCAACTTCGAAACAACTCACAAACCTACGCTCCCAGC
*
47852746 TGATAAACTTCGAC
131 TAATAAACTTCGAC
* * * *
47852760 ATAGCTCGTGGACCTACGCTACC-AGCTAATGTTTAAAGGTTAGTTGAGTTATGTTCACAGCCTT
1 ACAGCTCGTGGACCTACGCT-CCTAGTTAATGTTTAAAGGTTAGTTGAGTTATGCTCACAACCTT
*
47852824 CATTTATTTGAGTTAGCT
65 CATTTATTTTAGTTAGCT
47852842 GAATAGCTTG
Statistics
Matches: 307, Mismatches: 47, Indels: 19
0.82 0.13 0.05
Matches are distributed among these distances:
135 89 0.29
136 11 0.04
137 3 0.01
138 2 0.01
139 8 0.03
140 4 0.01
142 1 0.00
143 3 0.01
144 182 0.59
145 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (144 bp):
ACAGCTCGTGGACCTACGCTCCTAGTTAATGTTTAAAGGTTAGTTGAGTTATGCTCACAACCTTC
ATTTATTTTAGTTAGCTAGGTTAAGCTCGCAACTTCGAAACAACTCACAAACCTACGCTCCCAGC
TAATAAACTTCGAC
Found at i:47862034 original size:21 final size:21
Alignment explanation
Indices: 47862008--47862048 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
47861998 AAACAGTCTC
47862008 TTTTTTATTTTTTAT-TTTTTA
1 TTTTTTA-TTTTTATCTTTTTA
47862029 TTTTTTATTTTTATCTTTTT
1 TTTTTTATTTTTATCTTTTT
47862049 GTCATTCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.12, C:0.02, G:0.00, T:0.85
Consensus pattern (21 bp):
TTTTTTATTTTTATCTTTTTA
Found at i:47862047 original size:7 final size:7
Alignment explanation
Indices: 47862008--47862040 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
47861998 AAACAGTCTC
47862008 TTTTTTA
1 TTTTTTA
47862015 TTTTTTA
1 TTTTTTA
47862022 TTTTTTA
1 TTTTTTA
47862029 TTTTTTA
1 TTTTTTA
47862036 TTTTT
1 TTTTT
47862041 ATCTTTTTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Done.