Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 155 of 240
Found at i:48917942 original size:118 final size:117
Alignment explanation
Indices: 48917794--48918005 Score: 388
Period size: 118 Copynumber: 1.8 Consensus size: 117
48917784 CTTTAGCTAC
*
48917794 ACTTATCTGATCAAGTGACAAAGTGATAAGTGCTACACTTATCTGATCAAGAGACAAAGTGATAA
1 ACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTACACTTATCTGATCAAGAGACAAAGTGATAA
48917859 GTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGTGTTAT
66 GTGGTAGC-TTAGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGTGTTAT
* *
48917912 ACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTATACTTATCTGATCAAGTGACAAAGTGATAA
1 ACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTACACTTATCTGATCAAGAGACAAAGTGATAA
48917977 GTGGTAGCTTAGCTACACTTATCTGATCA
66 GTGGTAGCTTAGCTACACTTATCTGATCA
48918006 GGGACAAATG
Statistics
Matches: 91, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
117 21 0.23
118 70 0.77
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (117 bp):
ACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTACACTTATCTGATCAAGAGACAAAGTGATAA
GTGGTAGCTTAGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGTGTTAT
Found at i:48924569 original size:18 final size:19
Alignment explanation
Indices: 48924536--48924574 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
48924526 TAAATAGTTT
48924536 GAGTTATTCAAGTTAA-TC
1 GAGTTATTCAAGTTAACTC
48924554 GAGTTATTC-AGATTAACTC
1 GAGTTATTCAAG-TTAACTC
48924573 GA
1 GA
48924575 ATAAAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 2 0.11
18 13 0.68
19 4 0.21
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (19 bp):
GAGTTATTCAAGTTAACTC
Found at i:48924633 original size:15 final size:15
Alignment explanation
Indices: 48924613--48924643 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
48924603 CGAATATGAA
48924613 TTACACAATTCGAGT
1 TTACACAATTCGAGT
48924628 TTACACAATTCGAGT
1 TTACACAATTCGAGT
48924643 T
1 T
48924644 ATCCGAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (15 bp):
TTACACAATTCGAGT
Found at i:48927533 original size:23 final size:23
Alignment explanation
Indices: 48927490--48927539 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
48927480 TAGATTTAGT
**
48927490 TAAAAAAATAAATGTTAAAGTGA
1 TAAAAAAATAAACATTAAAGTGA
*
48927513 TAAAAAATATAAACATT-AAGTGT
1 TAAAAAA-ATAAACATTAAAGTGA
48927536 TAAA
1 TAAA
48927540 TTTATCTCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 16 0.70
24 7 0.30
ACGTcount: A:0.60, C:0.02, G:0.10, T:0.28
Consensus pattern (23 bp):
TAAAAAAATAAACATTAAAGTGA
Found at i:48928345 original size:11 final size:12
Alignment explanation
Indices: 48928325--48928376 Score: 52
Period size: 12 Copynumber: 4.1 Consensus size: 12
48928315 AATATTACAA
48928325 AATTTAAAAAAT
1 AATTTAAAAAAT
48928337 AATTTAAAAATGAT
1 AATTTAAAAA--AT
48928351 AAATTTACAAAAA-
1 -AATTTA-AAAAAT
*
48928364 AATGTAAAAAAT
1 AATTTAAAAAAT
48928376 A
1 A
48928377 TCAAACATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
11 5 0.15
12 16 0.47
14 3 0.09
15 6 0.18
16 4 0.12
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (12 bp):
AATTTAAAAAAT
Found at i:48928346 original size:20 final size:19
Alignment explanation
Indices: 48928237--48928430 Score: 89
Period size: 19 Copynumber: 10.3 Consensus size: 19
48928227 TGACCAGTCC
*
48928237 AAAAAGTATTAAAAA-TAT
1 AAAAAATATTAAAAATTAT
*
48928255 AAAAAAATATTTAGAAATTAT
1 -AAAAAATA-TTAAAAATTAT
* * * * *
48928276 AGAAATTTTTATAAATTCT
1 AAAAAATATTAAAAATTAT
48928295 -AAAAA-A-TAAAAATTAT
1 AAAAAATATTAAAAATTAT
*
48928311 TAAAAATATTACAAAATT-T
1 AAAAAATATTA-AAAATTAT
*
48928330 AAAAAATAATTTAAAAATGAT
1 AAAAAAT-A-TTAAAAATTAT
** ** * *
48928351 -AAATTTACAAAAAAATGT
1 AAAAAATATTAAAAATTAT
* *
48928369 AAAAAATATCAAACATTAT
1 AAAAAATATTAAAAATTAT
* *
48928388 CAAAAAT-TGAAAAATTAT
1 AAAAAATATTAAAAATTAT
*
48928406 AAAAAAATTAGTAAAAATT-T
1 -AAAAAA-TATTAAAAATTAT
48928426 AAAAA
1 AAAAA
48928431 TAAAAATATT
Statistics
Matches: 128, Mismatches: 34, Indels: 26
0.68 0.18 0.14
Matches are distributed among these distances:
16 8 0.06
17 5 0.04
18 19 0.15
19 53 0.41
20 29 0.23
21 14 0.11
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.30
Consensus pattern (19 bp):
AAAAAATATTAAAAATTAT
Found at i:48931308 original size:13 final size:13
Alignment explanation
Indices: 48931290--48931320 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
48931280 ATCATGGCAG
48931290 TGAAGTAGGTTGT
1 TGAAGTAGGTTGT
48931303 TGAAGTAGGTTGT
1 TGAAGTAGGTTGT
48931316 TGAAG
1 TGAAG
48931321 GTTACCATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.26, C:0.00, G:0.39, T:0.35
Consensus pattern (13 bp):
TGAAGTAGGTTGT
Found at i:48951316 original size:19 final size:19
Alignment explanation
Indices: 48951300--48951354 Score: 60
Period size: 18 Copynumber: 2.9 Consensus size: 19
48951290 AATTTTTATT
48951300 TTTATTTATTTTTTTTAAA
1 TTTATTTATTTTTTTTAAA
**
48951319 TTTATTTA-TTACTTT-AA
1 TTTATTTATTTTTTTTAAA
48951336 TTTAATTTATTTTATTTTA
1 TTT-ATTTATTTT-TTTTA
48951355 CTTATTGGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
17 5 0.18
18 10 0.36
19 10 0.36
20 3 0.11
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTATTTATTTTTTTTAAA
Found at i:48952392 original size:17 final size:17
Alignment explanation
Indices: 48952370--48952402 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
48952360 CCTAAAGCAT
*
48952370 AAAAAAGAGAAAAAAAC
1 AAAAAAAAGAAAAAAAC
48952387 AAAAAAAAGAAAAAAA
1 AAAAAAAAGAAAAAAA
48952403 ATTTAGGGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (17 bp):
AAAAAAAAGAAAAAAAC
Found at i:48952403 original size:9 final size:9
Alignment explanation
Indices: 48952370--48952403 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
48952360 CCTAAAGCAT
48952370 AAAAAAGAGA
1 AAAAAAGA-A
*
48952380 AAAAAACAA
1 AAAAAAGAA
48952389 AAAAAAGAA
1 AAAAAAGAA
48952398 AAAAAA
1 AAAAAA
48952404 TTTAGGGACT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 15 0.68
10 7 0.32
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (9 bp):
AAAAAAGAA
Found at i:48956944 original size:28 final size:29
Alignment explanation
Indices: 48956913--48956974 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 29
48956903 ATTAGGTTAT
* *
48956913 GACATATTAAAAACTT-GTATTAAAATAA
1 GACATATTAAAAACTTAATAATAAAATAA
* * *
48956941 GACACATTAAACACTTAATAATAAAATCA
1 GACATATTAAAAACTTAATAATAAAATAA
48956970 GACAT
1 GACAT
48956975 TTATTTTATT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
28 14 0.52
29 13 0.48
ACGTcount: A:0.53, C:0.13, G:0.06, T:0.27
Consensus pattern (29 bp):
GACATATTAAAAACTTAATAATAAAATAA
Found at i:48963332 original size:24 final size:19
Alignment explanation
Indices: 48963282--48963320 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
48963272 TGCAGTTTTT
48963282 AAGTACAATGCTACAGTTC
1 AAGTACAATGCTACAGTTC
48963301 AAGTACAATGCTACAGTTC
1 AAGTACAATGCTACAGTTC
48963320 A
1 A
48963321 CAATGTGTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (19 bp):
AAGTACAATGCTACAGTTC
Found at i:48964997 original size:40 final size:40
Alignment explanation
Indices: 48964897--48965068 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
48964887 GCTCCTCGTT
* * *
48964897 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
48964937 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
48964976 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
48965016 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
48965056 CAAATGCCTTCGG
1 CAAATGCCTTCGG
48965069 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:48965081 original size:80 final size:79
Alignment explanation
Indices: 48964897--48965111 Score: 227
Period size: 80 Copynumber: 2.7 Consensus size: 79
48964887 GCTCCTCGTT
* * *
48964897 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGA
48964962 TTTAATAACTCGCA
66 TTTAATAACTCGCA
* * * * * *
48964976 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG
* *
48965041 AATTT-GTATCTCGCA
65 -ATTTAATAACTCGCA
* * * * * *
48965056 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGAC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CACAAGGCCTTCGGGAC
48965112 TTAGCCCTGA
Statistics
Matches: 110, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
79 38 0.35
80 65 0.59
81 7 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGA
TTTAATAACTCGCA
Found at i:48965130 original size:41 final size:41
Alignment explanation
Indices: 48965053--48965130 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
48965043 TTTGTATCTC
* *
48965053 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGATACATTCACTTA
*
48965094 GCACAAA-GCCTTCGGGA-CTTAGCCCTGATAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGATA-CATTCA
48965131 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGATACATTCACTTA
Found at i:48966915 original size:51 final size:51
Alignment explanation
Indices: 48966851--48966986 Score: 164
Period size: 51 Copynumber: 2.7 Consensus size: 51
48966841 TGGAAACATG
*
48966851 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGTA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGTA
* * * ** * * **
48966902 ATCTTATAAGATATTATTTTATAAGATTACATATCTTATCTAAGATATGTA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGTA
* *
48966953 ATCTTAGAAGATATGATATTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATATTATAATCTTAGAGAT
48966987 TTGATGGTAG
Statistics
Matches: 67, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
51 67 1.00
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.42
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGTA
Found at i:48968229 original size:5 final size:5
Alignment explanation
Indices: 48968219--48968290 Score: 64
Period size: 5 Copynumber: 14.8 Consensus size: 5
48968209 TGTTAAAAAA
* *
48968219 ATATT ATATT ATAGTA ATGATT ATGTT -T-TT ATATT ATATT ATTATT
1 ATATT ATATT ATA-TT AT-ATT ATATT ATATT ATATT ATATT A-TATT
48968265 A-A-T ATATT ATATT ATATT ATA-T ATAT
1 ATATT ATATT ATATT ATATT ATATT ATAT
48968291 ACATAAAACA
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
3 4 0.07
4 8 0.14
5 32 0.57
6 11 0.20
7 1 0.02
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (5 bp):
ATATT
Found at i:48968272 original size:19 final size:19
Alignment explanation
Indices: 48968248--48968290 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
48968238 ATTATGTTTT
48968248 TATATTATATTATTATTA-A
1 TATATTATATTA-TATTATA
48968267 TATATTATATTATATTATA
1 TATATTATATTATATTATA
48968286 TATAT
1 TATAT
48968291 ACATAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TATATTATATTATATTATA
Found at i:48968323 original size:18 final size:19
Alignment explanation
Indices: 48968295--48968334 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
48968285 ATATATACAT
*
48968295 AAAACAAAAGAAAGAATAG
1 AAAACAAAAGAAAGAAAAG
48968314 AAAA-AAAAGAAAGAAAAG
1 AAAACAAAAGAAAGAAAAG
48968332 AAA
1 AAA
48968335 CAGAATAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.80, C:0.03, G:0.15, T:0.03
Consensus pattern (19 bp):
AAAACAAAAGAAAGAAAAG
Found at i:48969299 original size:44 final size:45
Alignment explanation
Indices: 48969204--48969337 Score: 162
Period size: 44 Copynumber: 3.0 Consensus size: 45
48969194 ACAGGACAGA
* *
48969204 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
48969250 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * *
48969294 ACAGGAATAATTCATGTAAGTCCATGTTAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
48969338 CAGGATATTG
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
44 37 0.49
45 1 0.01
46 37 0.49
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:48970890 original size:326 final size:327
Alignment explanation
Indices: 48970267--48970916 Score: 1275
Period size: 326 Copynumber: 2.0 Consensus size: 327
48970257 TTTAGTGACT
48970267 AGAGGTCAGGGCAGTCTGGTGGTGACACAGGGGAGACTTTAACTAATAAACTGTACTAATTTGCT
1 AGAGGTCAGGGCAGTCTGGTGGTGACACAGGGGAGACTTTAACTAATAAACTGTACTAATTTGCT
48970332 GAACAAAAAATTCTAAAAATTTTATGGTGAGTAGATATATGAGTCTAGTTTCAGGGAAAATTTAC
66 GAACAAAAAATTCTAAAAATTTTATGGTGAGTAGATATATGAGTCTAGTTTCAGGGAAAATTTAC
* *
48970397 GGGATTAAATTTTGAGTTCTTTAGCTCAAGTTATAATTAATTTAGTAACTGCTGCGCGACTAGAC
131 GGGATTAAATTTCGAGTTCTTTAGCTCAAGTTATAATTAATTTAGTAACTACTGCGCGACTAGAC
48970462 AGATTTGCTGCGAATAATGAAATAAATTTTCAAACCTAGTTTTTATGCTCCGAACTGGTAAGATA
196 AGATTTGCTGCGAATAATGAAATAAATTTTCAAACCTAGTTTTTATGCTCCGAACTGGTAAGATA
48970527 AGCCAAGTAATGCCTCGTGCTCGACTCCAGAAACGGTCTCGGGTAAGGGGTGTTACATTTATTGC
261 AGCCAAGTAATGCCTCGTGCTCGACTCCAGAAACGGTCTCGGGTAAGGGGTGTTACATTTATTGC
48970592 TC
326 TC
48970594 AGAGGTCAGGGCAGTCTGGTGGTGACACA-GGGAGACTTTAACTAATAAACTGTACTAATTTGCT
1 AGAGGTCAGGGCAGTCTGGTGGTGACACAGGGGAGACTTTAACTAATAAACTGTACTAATTTGCT
48970658 GAACAAAAAATTCTAAAAATTTTATGGTGAGTAGATATATGAGTCTAGTTTCAGGGAAAATTTAC
66 GAACAAAAAATTCTAAAAATTTTATGGTGAGTAGATATATGAGTCTAGTTTCAGGGAAAATTTAC
48970723 GGGATTAAATTTCGAGTTCTTTAGCTCAAGTTATAATTAATTTAGTAACTACTGCGCGACTAGAC
131 GGGATTAAATTTCGAGTTCTTTAGCTCAAGTTATAATTAATTTAGTAACTACTGCGCGACTAGAC
48970788 AGATTTGCTGCGAATAATGAAATAAATTTTCAAACCTAGTTTTTATGCTCCGAACTGGTAAGATA
196 AGATTTGCTGCGAATAATGAAATAAATTTTCAAACCTAGTTTTTATGCTCCGAACTGGTAAGATA
48970853 AGCCAAGTAATGCCTCGTGCTCGACTCCAGAAACGGTCTCGGGTAAGGGGTGTTACATTTATTG
261 AGCCAAGTAATGCCTCGTGCTCGACTCCAGAAACGGTCTCGGGTAAGGGGTGTTACATTTATTG
48970917 GTATCAGAGC
Statistics
Matches: 321, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
326 292 0.91
327 29 0.09
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (327 bp):
AGAGGTCAGGGCAGTCTGGTGGTGACACAGGGGAGACTTTAACTAATAAACTGTACTAATTTGCT
GAACAAAAAATTCTAAAAATTTTATGGTGAGTAGATATATGAGTCTAGTTTCAGGGAAAATTTAC
GGGATTAAATTTCGAGTTCTTTAGCTCAAGTTATAATTAATTTAGTAACTACTGCGCGACTAGAC
AGATTTGCTGCGAATAATGAAATAAATTTTCAAACCTAGTTTTTATGCTCCGAACTGGTAAGATA
AGCCAAGTAATGCCTCGTGCTCGACTCCAGAAACGGTCTCGGGTAAGGGGTGTTACATTTATTGC
TC
Found at i:48974703 original size:5 final size:5
Alignment explanation
Indices: 48974693--48974764 Score: 64
Period size: 5 Copynumber: 14.8 Consensus size: 5
48974683 TGTTAAAAAA
* *
48974693 ATATT ATATT ATAGTA ATGATT ATGTT -T-TT ATATT ATATT ATTATT
1 ATATT ATATT ATA-TT AT-ATT ATATT ATATT ATATT ATATT A-TATT
48974739 A-A-T ATATT ATATT ATATT ATA-T ATAT
1 ATATT ATATT ATATT ATATT ATATT ATAT
48974765 ACATAAAACA
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
3 4 0.07
4 8 0.14
5 32 0.57
6 11 0.20
7 1 0.02
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (5 bp):
ATATT
Found at i:48974746 original size:19 final size:19
Alignment explanation
Indices: 48974722--48974764 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
48974712 ATTATGTTTT
48974722 TATATTATATTATTATTA-A
1 TATATTATATTA-TATTATA
48974741 TATATTATATTATATTATA
1 TATATTATATTATATTATA
48974760 TATAT
1 TATAT
48974765 ACATAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TATATTATATTATATTATA
Found at i:48974797 original size:18 final size:19
Alignment explanation
Indices: 48974769--48974808 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
48974759 ATATATACAT
*
48974769 AAAACAAAAGAAAGAATAG
1 AAAACAAAAGAAAGAAAAG
48974788 AAAA-AAAAGAAAGAAAAG
1 AAAACAAAAGAAAGAAAAG
48974806 AAA
1 AAA
48974809 CAGAATAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.80, C:0.03, G:0.15, T:0.03
Consensus pattern (19 bp):
AAAACAAAAGAAAGAAAAG
Found at i:48975773 original size:44 final size:45
Alignment explanation
Indices: 48975678--48975811 Score: 162
Period size: 44 Copynumber: 3.0 Consensus size: 45
48975668 ACAGGACAGA
* *
48975678 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
48975724 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * *
48975768 ACAGGAATAATTCATGTAAGTCCATGTTAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
48975812 CAGGATATTG
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
44 37 0.49
45 1 0.01
46 37 0.49
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:48978979 original size:51 final size:51
Alignment explanation
Indices: 48978915--48979050 Score: 164
Period size: 51 Copynumber: 2.7 Consensus size: 51
48978905 TGGAAACATG
*
48978915 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGTA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGTA
* * * ** * * **
48978966 ATCTTATAAGATATTATTTTATAAGATTACATATCTTATCTAAGATATGTA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGTA
* *
48979017 ATCTTAGAAGATATGATATTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATATTATAATCTTAGAGAT
48979051 TTGATGGTAG
Statistics
Matches: 67, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
51 67 1.00
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.42
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGTA
Found at i:48982000 original size:27 final size:27
Alignment explanation
Indices: 48981954--48982016 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
48981944 GTTGAACCAA
*
48981954 TGTTTACTGTCCAGGTGGACTACTCC-G
1 TGTTTACTGTCCAGGAGGACTAC-CCTG
** *
48981981 TGTTTACTGTCTTGGAGGACTACCCTT
1 TGTTTACTGTCCAGGAGGACTACCCTG
48982008 TGTTTACTG
1 TGTTTACTG
48982017 AATTCGAGAG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 2 0.06
27 29 0.94
ACGTcount: A:0.14, C:0.22, G:0.24, T:0.40
Consensus pattern (27 bp):
TGTTTACTGTCCAGGAGGACTACCCTG
Found at i:48983747 original size:6 final size:6
Alignment explanation
Indices: 48983736--48983764 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
48983726 AAATTATAAT
48983736 ATATTA ATATTA ATATTA ATATTA ATATT
1 ATATTA ATATTA ATATTA ATATTA ATATT
48983765 CAAACCATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
ATATTA
Found at i:48984204 original size:25 final size:24
Alignment explanation
Indices: 48984161--48984209 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
48984151 AAAAAATTGA
48984161 TATTTAATTGATATGCTTTAATTTT
1 TATTTAATTGATATGCTTT-ATTTT
*
48984186 TATTTAATTTAGTAT-CTTTATTTT
1 TATTTAATTGA-TATGCTTTATTTT
48984210 ATAATATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 5 0.23
25 14 0.64
26 3 0.14
ACGTcount: A:0.27, C:0.04, G:0.06, T:0.63
Consensus pattern (24 bp):
TATTTAATTGATATGCTTTATTTT
Found at i:49002033 original size:21 final size:22
Alignment explanation
Indices: 49002007--49002053 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
49001997 CTCTGCTCAA
*
49002007 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
49002028 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
49002050 ACTC
1 ACTC
49002054 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:49005900 original size:49 final size:49
Alignment explanation
Indices: 49005838--49005931 Score: 134
Period size: 49 Copynumber: 1.9 Consensus size: 49
49005828 CCATGATAGC
* * * *
49005838 ATAACCATTGTCAACTGGGGGCTCGAGTTATACTTCAACCCGTGACTGT
1 ATAACCATCGTCAACTAGGAGCCCGAGTTATACTTCAACCCGTGACTGT
* *
49005887 ATAACCATCGTCAACTAGGAGCCCTAGTTATACTTCAACCTGTGA
1 ATAACCATCGTCAACTAGGAGCCCGAGTTATACTTCAACCCGTGA
49005932 TCATATAACA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 39 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (49 bp):
ATAACCATCGTCAACTAGGAGCCCGAGTTATACTTCAACCCGTGACTGT
Found at i:49007593 original size:47 final size:48
Alignment explanation
Indices: 49007541--49007635 Score: 131
Period size: 49 Copynumber: 2.0 Consensus size: 48
49007531 ATGCCCAAAT
* * *
49007541 TATTTAAGCAACT-A-AAAATTCAAAAGAGCTTAATTAATTAAACTAAG
1 TATTTAAGCAACTAAGAAAATT-AAAACAACTGAATTAATTAAACTAAG
49007588 TATTTAAGCAACTAAAGAAAATTAAAACAACTGAATTAATTAAACTAA
1 TATTTAAGCAACT-AAGAAAATTAAAACAACTGAATTAATTAAACTAA
49007636 ACATATTAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
47 13 0.31
49 23 0.55
50 6 0.14
ACGTcount: A:0.54, C:0.11, G:0.07, T:0.28
Consensus pattern (48 bp):
TATTTAAGCAACTAAGAAAATTAAAACAACTGAATTAATTAAACTAAG
Found at i:49010588 original size:16 final size:16
Alignment explanation
Indices: 49010568--49010635 Score: 66
Period size: 16 Copynumber: 4.0 Consensus size: 16
49010558 ATTTTCTCAA
49010568 CTTTTCCTTTTTTTTT
1 CTTTTCCTTTTTTTTT
* *
49010584 GTTTTTCTTTTCTTTTT
1 CTTTTCCTTTT-TTTTT
49010601 CTTTTTTCTCTTTTTTTTT
1 C--TTTTC-CTTTTTTTTT
49010620 CTTATT-CTTTTTTTTT
1 CTT-TTCCTTTTTTTTT
49010636 ACAGTCTTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
16 19 0.44
17 7 0.16
18 2 0.05
19 10 0.23
20 5 0.12
ACGTcount: A:0.01, C:0.15, G:0.01, T:0.82
Consensus pattern (16 bp):
CTTTTCCTTTTTTTTT
Found at i:49010599 original size:18 final size:16
Alignment explanation
Indices: 49010569--49010635 Score: 71
Period size: 18 Copynumber: 3.9 Consensus size: 16
49010559 TTTTCTCAAC
* *
49010569 TTTTCCTTTTTTTTTG
1 TTTTTCTTTTTTTTTT
49010585 TTTTTCTTTTCTTTTTCT
1 TTTTTCTTTT-TTTTT-T
49010603 TTTTTCTCTTTTTTTTT
1 TTTTTCT-TTTTTTTTT
*
49010620 CTTATTCTTTTTTTTT
1 -TTTTTCTTTTTTTTT
49010636 ACAGTCTTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
16 9 0.20
17 14 0.32
18 18 0.41
19 3 0.07
ACGTcount: A:0.01, C:0.13, G:0.01, T:0.84
Consensus pattern (16 bp):
TTTTTCTTTTTTTTTT
Found at i:49010599 original size:20 final size:19
Alignment explanation
Indices: 49010569--49010635 Score: 72
Period size: 17 Copynumber: 3.8 Consensus size: 19
49010559 TTTTCTCAAC
*
49010569 TTTTC-CTTTTTTTTT-GT
1 TTTTCTCTTTTTTTTTCTT
*
49010586 TTTTCT-TTTCTTTTTCTT
1 TTTTCTCTTTTTTTTTCTT
49010604 TTTTCTCTTTTTTTTTC-T
1 TTTTCTCTTTTTTTTTCTT
*
49010622 TATTCT-TTTTTTTT
1 TTTTCTCTTTTTTTT
49010636 ACAGTCTTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
17 21 0.49
18 13 0.30
19 9 0.21
ACGTcount: A:0.01, C:0.13, G:0.01, T:0.84
Consensus pattern (19 bp):
TTTTCTCTTTTTTTTTCTT
Found at i:49010614 original size:25 final size:24
Alignment explanation
Indices: 49010578--49010632 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 24
49010568 CTTTTCCTTT
* *
49010578 TTTTTTGTTTTTCTTTTCTTTTTC
1 TTTTTTCTTTTTCTTTTCTTATTC
*
49010602 TTTTTTCTCTTTTTTTTTCTTATTC
1 TTTTTTCT-TTTTCTTTTCTTATTC
49010627 TTTTTT
1 TTTTTT
49010633 TTTACAGTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 7 0.26
25 20 0.74
ACGTcount: A:0.02, C:0.13, G:0.02, T:0.84
Consensus pattern (24 bp):
TTTTTTCTTTTTCTTTTCTTATTC
Found at i:49010628 original size:36 final size:34
Alignment explanation
Indices: 49010569--49010635 Score: 98
Period size: 36 Copynumber: 1.9 Consensus size: 34
49010559 TTTTCTCAAC
* *
49010569 TTTTCCTTTTTTTTTGTTTTTCTTTTCTTTTTCTT
1 TTTTCCTTTTTTTTTCTTATTCTTTT-TTTTTCTT
49010604 TTTTCTCTTTTTTTTTCTTATTCTTTTTTTTT
1 TTTTC-CTTTTTTTTTCTTATTCTTTTTTTTT
49010636 ACAGTCTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
35 10 0.34
36 19 0.66
ACGTcount: A:0.01, C:0.13, G:0.01, T:0.84
Consensus pattern (34 bp):
TTTTCCTTTTTTTTTCTTATTCTTTTTTTTTCTT
Found at i:49020092 original size:19 final size:19
Alignment explanation
Indices: 49020070--49020107 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
49020060 TCAATCATCC
49020070 CTCATCGCATCA-TCTCTCA
1 CTCAT-GCATCATTCTCTCA
*
49020089 CTCATTCATCATTCTCTCA
1 CTCATGCATCATTCTCTCA
49020108 ACTCTTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.39, G:0.03, T:0.37
Consensus pattern (19 bp):
CTCATGCATCATTCTCTCA
Found at i:49032016 original size:28 final size:28
Alignment explanation
Indices: 49031974--49032038 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
49031964 TAGCAATCTT
*
49031974 AATCAACTATTGTCTCAGGTTCTTCGTC
1 AATCAACTATCGTCTCAGGTTCTTCGTC
49032002 AATCAACTATCGTCTCAGGTTCTTCGTC
1 AATCAACTATCGTCTCAGGTTCTTCGTC
*
49032030 AATTAACTA
1 AATCAACTA
49032039 GTCGCTACTC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.26, C:0.25, G:0.12, T:0.37
Consensus pattern (28 bp):
AATCAACTATCGTCTCAGGTTCTTCGTC
Found at i:49040075 original size:27 final size:27
Alignment explanation
Indices: 49040037--49040093 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
49040027 ACATAACGAG
49040037 TCAGCAAGAACTACTTACCTTTTGACC
1 TCAGCAAGAACTACTTACCTTTTGACC
49040064 TCAGCAAGAACTACTTACCTTTTGACC
1 TCAGCAAGAACTACTTACCTTTTGACC
49040091 TCA
1 TCA
49040094 TAGTCTAGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.30, C:0.30, G:0.11, T:0.30
Consensus pattern (27 bp):
TCAGCAAGAACTACTTACCTTTTGACC
Found at i:49049130 original size:21 final size:21
Alignment explanation
Indices: 49049104--49049154 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
49049094 GTTGAGAAGA
*
49049104 AAGTTGCTACTGTAGAA-GAG
1 AAGTTGCTACTGAAGAAGGAG
* *
49049124 TAAGTTGTTGCTGAAGAAGGAG
1 -AAGTTGCTACTGAAGAAGGAG
49049146 AAGTTGCTA
1 AAGTTGCTA
49049155 AAAATGAGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
21 21 0.88
22 3 0.12
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.27
Consensus pattern (21 bp):
AAGTTGCTACTGAAGAAGGAG
Found at i:49053851 original size:23 final size:22
Alignment explanation
Indices: 49053800--49053851 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
49053790 CCTCATCTTT
*
49053800 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
49053822 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
49053845 TTCTTTT
1 TTCTTTT
49053852 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:49059263 original size:18 final size:18
Alignment explanation
Indices: 49059242--49059276 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
49059232 TTTTCAATTT
49059242 TTTTAATTTTTTTCTTTC
1 TTTTAATTTTTTTCTTTC
**
49059260 TTTTCTTTTTTTTCTTT
1 TTTTAATTTTTTTCTTT
49059277 GTCTTTGTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.11, G:0.00, T:0.83
Consensus pattern (18 bp):
TTTTAATTTTTTTCTTTC
Found at i:49066282 original size:11 final size:13
Alignment explanation
Indices: 49066266--49066298 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
49066256 ATTTCACATA
49066266 AAAATTTCG-T-G
1 AAAATTTCGTTCG
49066277 AAAATTTCGTTCG
1 AAAATTTCGTTCG
49066290 AAAATTTCG
1 AAAATTTCG
49066299 ACGTTTGGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.45
12 1 0.05
13 10 0.50
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (13 bp):
AAAATTTCGTTCG
Found at i:49067011 original size:30 final size:31
Alignment explanation
Indices: 49066977--49067034 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
49066967 AGCTTGGGAA
49066977 CAAAAATGTAATTATG-CAAAAGTTTAGGGG
1 CAAAAATGTAATTATGACAAAAGTTTAGGGG
* *
49067007 CAAAATTGTAATTTTGACAAAAGTTTAG
1 CAAAAATGTAATTATGACAAAAGTTTAG
49067035 TCGAAGCTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.43, C:0.07, G:0.19, T:0.31
Consensus pattern (31 bp):
CAAAAATGTAATTATGACAAAAGTTTAGGGG
Found at i:49067674 original size:102 final size:101
Alignment explanation
Indices: 49067498--49067841 Score: 478
Period size: 102 Copynumber: 3.4 Consensus size: 101
49067488 TATCGATGAA
* * * *
49067498 CACGTGTGTAGTACTGTGTGAAGGCTACCACGTGTATCGATAAATAATGGTCACATGTGTAGCAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGTAGTAC
*
49067563 TAAGTGAAGGCTACAATGTGTACCGAGAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTGTACCGA-AAGCTTTGGT
* *
49067600 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGTAGTAC
49067665 TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTGTACCG-AAAGCTTTGGT
* * *
49067702 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCG-TAAA-ACTTGATCACGTGTGTAGTA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATA-ATGGTCACATGTGTAGTA
* * * * *
49067765 CTATGTGAAGGCTACTACGTGAACCGTAAAAC-TTGAT
65 CTAAGTGAAGGCTACTATGTGTACCG-AAAGCTTTGGT
* *
49067802 CACCTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGA
49067842 ATGATAAAAG
Statistics
Matches: 221, Mismatches: 18, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
100 41 0.19
101 46 0.21
102 133 0.60
103 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (101 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGTGTACCGAAAGCTTTGGT
Found at i:49067768 original size:50 final size:50
Alignment explanation
Indices: 49067498--49067840 Score: 377
Period size: 51 Copynumber: 6.8 Consensus size: 50
49067488 TATCGATGAA
* * *
49067498 CACGTGTGTAGTACTGTGTGAAGGCTACCACGTGTATCGATAAATA-ATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCG-TAAA-ACTTGGT
* * * * * * *
49067549 CACATGTGTAGCACTAAGTGAAGGCTACAATGTGTACCG-AGAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGTA-AAAC-TTGGT
* * ***
49067600 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCG-TAAAACTTGGT
* * * *
49067651 CACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCG-AAAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGTAAAA-C-TTGGT
* *
49067702 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGTAAAACTTGGT
* * *
49067752 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGTAAAACTTGGT
*
49067802 CACCTGTGTAGTACTATGTGAAGGCTACTACGTGTATCG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCG
49067841 AATGATAAAA
Statistics
Matches: 245, Mismatches: 39, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
49 4 0.02
50 91 0.37
51 143 0.58
52 6 0.02
53 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGTAAAACTTGGT
Found at i:49071747 original size:18 final size:18
Alignment explanation
Indices: 49071726--49071764 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
49071716 GATTGAGAGT
* *
49071726 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
*
49071744 GAAAAGAAATTTGAAAAA
1 GAAAAGAAATGTGAAAAA
49071762 GAA
1 GAA
49071765 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.23, T:0.13
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:49073185 original size:12 final size:13
Alignment explanation
Indices: 49073163--49073191 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
49073153 AAGTTTTATT
49073163 TTTATTTTATTTA
1 TTTATTTTATTTA
49073176 TTTA-TTTATTTA
1 TTTATTTTATTTA
49073188 TTTA
1 TTTA
49073192 CTTAGTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:49075117 original size:29 final size:28
Alignment explanation
Indices: 49075063--49075123 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 28
49075053 TATAAAACTT
*
49075063 ATATATGCATTTATGAAAAAAATATATAA
1 ATATATGCATATATGAAAAAAATATA-AA
* *
49075092 ATATATGCATATAT-ACATAAATTATAAA
1 ATATATGCATATATGA-AAAAAATATAAA
49075120 ATAT
1 ATAT
49075124 GTGTTAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 7 0.25
29 21 0.75
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (28 bp):
ATATATGCATATATGAAAAAAATATAAA
Found at i:49075376 original size:18 final size:19
Alignment explanation
Indices: 49075345--49075383 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
49075335 ATATTAGTTT
*
49075345 TAAAAAAATAAAATGTACA
1 TAAAAAAATAAAATATACA
49075364 TAAAAAAAT-AAATATACA
1 TAAAAAAATAAAATATACA
49075382 TA
1 TA
49075384 TATATAGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.69, C:0.05, G:0.03, T:0.23
Consensus pattern (19 bp):
TAAAAAAATAAAATATACA
Found at i:49077108 original size:45 final size:45
Alignment explanation
Indices: 49077057--49077186 Score: 161
Period size: 45 Copynumber: 2.9 Consensus size: 45
49077047 TTGTTTATTT
* * * *
49077057 AGTTTGCCCCACTGCAATTTCAGGGGGATAAGACTTGCTTTCTTG
1 AGTTTGCTCCACTGCAACTTCAGGGAGATAAGACCTGCTTTCTTG
* **
49077102 AGTTTGCTCCACTGCAACTTCAGGGAAATAAGACCCACTTTCTTG
1 AGTTTGCTCCACTGCAACTTCAGGGAGATAAGACCTGCTTTCTTG
* ** *
49077147 GGCCTACTCCACTGCAACTTCAGGGAGATAAGACCTGCTT
1 AGTTTGCTCCACTGCAACTTCAGGGAGATAAGACCTGCTT
49077187 ACTCAATCTA
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 71 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (45 bp):
AGTTTGCTCCACTGCAACTTCAGGGAGATAAGACCTGCTTTCTTG
Found at i:49077306 original size:44 final size:44
Alignment explanation
Indices: 49077242--49077340 Score: 128
Period size: 44 Copynumber: 2.2 Consensus size: 44
49077232 GATCTGCTCT
* *
49077242 CTGCAACTTCAGAGAGATAGGATCT-GTGATTTTAATCCGCTCCA
1 CTGCAACTTCAGAGACATAGGAT-TAGTGACTTTAATCCGCTCCA
* * * *
49077286 CTGCAACTTCAGGGACATAGGATTATTGGCTTTAATCTGCTCCA
1 CTGCAACTTCAGAGACATAGGATTAGTGACTTTAATCCGCTCCA
49077330 CTGCAACTTCA
1 CTGCAACTTCA
49077341 AGGAGATAAG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
43 1 0.02
44 47 0.98
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.30
Consensus pattern (44 bp):
CTGCAACTTCAGAGACATAGGATTAGTGACTTTAATCCGCTCCA
Found at i:49077860 original size:267 final size:267
Alignment explanation
Indices: 49077378--49077902 Score: 771
Period size: 267 Copynumber: 2.0 Consensus size: 267
49077368 TTTAATCGCA
* * *
49077378 ATGTTGGGGAAACAAGATTCGCTGTCATAGCTTCAATTTGTTCCACTACACCACCAGGGAAGTAA
1 ATGTTAGGGAAACAAGATTCGCCGTCATAGCTTCAATCTGTTCCACTACACCACCAGGGAAGTAA
* * *
49077443 GATTCGCCGTTGCAACTTTAATCTGCTCCACTGTAATGCCAAAGAGATAGGGTTCGCTACCCACA
66 GATTCGCCGTTGCAACTTCAATCTGCTCCACTGTAATGCCAAAGAGATAGGATTCACTACCCACA
* * *
49077508 GCTTCAATCCGCTCTACTTCATCTAATCCAAGCCTTAACGCCAAGGAGATAAGATTTGCCATCGT
131 GCTTCAATCCGCTCCACTTCAGCTAATCCAAGCCTTAACGCCAAGGAGATAAGATTCGCCATCGT
* *
49077573 GGCTTCAATCTGCCCCGCTACAACGCCAAGGAAATAAGATTCGCCGTTGCGGCTTCAATCTTTTA
196 GGCTTCAATCTGCCCCGCTACAACGCCAAGGAAATAAGATTCCCCGTTGCGACTTCAATCTTTTA
49077638 AATTGCC
261 AATTGCC
* * * *
49077645 ATGTTAGGGAAACGAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGGAGTAA
1 ATGTTAGGGAAACAAGATTCGCCGTCATAGCTTCAATCTGTTCCACTACACCACCAGGGAAGTAA
** *** * * *
49077710 GATTTTCCGTTGTGGCTTCAATCTTCTCCATTGTAATGCCAAAGAGATAGGATTCACTGCCCACA
66 GATTCGCCGTTGCAACTTCAATCTGCTCCACTGTAATGCCAAAGAGATAGGATTCACTACCCACA
* * * **
49077775 GCTTTAATCCGCTCCACTTCAGCTAATCCAAGCCTTAACGCCAGGGAGATTAGATTCGCTGTCGT
131 GCTTCAATCCGCTCCACTTCAGCTAATCCAAGCCTTAACGCCAAGGAGATAAGATTCGCCATCGT
* * *
49077840 GGCTTCAATCTGCTCCGCTACAACGCCAGGGAAATAAGATTCCCCGTTGTGACTTCAATCTTT
196 GGCTTCAATCTGCCCCGCTACAACGCCAAGGAAATAAGATTCCCCGTTGCGACTTCAATCTTT
49077903 GCAACGTCAT
Statistics
Matches: 227, Mismatches: 31, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
267 227 1.00
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (267 bp):
ATGTTAGGGAAACAAGATTCGCCGTCATAGCTTCAATCTGTTCCACTACACCACCAGGGAAGTAA
GATTCGCCGTTGCAACTTCAATCTGCTCCACTGTAATGCCAAAGAGATAGGATTCACTACCCACA
GCTTCAATCCGCTCCACTTCAGCTAATCCAAGCCTTAACGCCAAGGAGATAAGATTCGCCATCGT
GGCTTCAATCTGCCCCGCTACAACGCCAAGGAAATAAGATTCCCCGTTGCGACTTCAATCTTTTA
AATTGCC
Found at i:49082165 original size:18 final size:19
Alignment explanation
Indices: 49082134--49082172 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
49082124 ATATTAGTTT
*
49082134 TAAAAAAATAAAATGTACA
1 TAAAAAAATAAAATATACA
49082153 TAAAAAAAT-AAATATACA
1 TAAAAAAATAAAATATACA
49082171 TA
1 TA
49082173 TATATATAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.69, C:0.05, G:0.03, T:0.23
Consensus pattern (19 bp):
TAAAAAAATAAAATATACA
Found at i:49083528 original size:27 final size:27
Alignment explanation
Indices: 49083510--49083668 Score: 189
Period size: 27 Copynumber: 5.9 Consensus size: 27
49083500 GGTATAACAG
*
49083510 TCATTTTACCCTATGGGGGTATTTCGA
1 TCATCTTACCCTATGGGGGTATTTCGA
*
49083537 TCATCTTACCCTAAGGGGGTATTTC-A
1 TCATCTTACCCTATGGGGGTATTTCGA
*
49083563 GT-ACTCTTACCATATGGGGGTATTTCGA
1 -TCA-TCTTACCCTATGGGGGTATTTCGA
*
49083591 TCATCTTACCATATGGGGGTATTTCGA
1 TCATCTTACCCTATGGGGGTATTTCGA
* *
49083618 TCATCTTACCCTATAGGGGTATTT-TA
1 TCATCTTACCCTATGGGGGTATTTCGA
* * *
49083644 GCCATTTTACCCTATAGGGGTATTT
1 -TCATCTTACCCTATGGGGGTATTT
49083669 TGGTTATTTT
Statistics
Matches: 118, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
26 3 0.03
27 113 0.96
28 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.38
Consensus pattern (27 bp):
TCATCTTACCCTATGGGGGTATTTCGA
Found at i:49083654 original size:81 final size:81
Alignment explanation
Indices: 49083510--49083668 Score: 223
Period size: 81 Copynumber: 2.0 Consensus size: 81
49083500 GGTATAACAG
* * *
49083510 TCATTTTACCCTATGGGGGTATTTCGATCATCTTACCCTAAGGGGGTATTTCAGTACTCTTACCA
1 TCATCTTACCATATGGGGGTATTTCGATCATCTTACCCTAAGGGGGTATTTCAGCACTCTTACCA
*
49083575 TATGGGGGTATTTCGA
66 TATAGGGGTATTTCGA
* *
49083591 TCATCTTACCATATGGGGGTATTTCGATCATCTTACCCTATA-GGGGTATTTTAGC-CATTTTAC
1 TCATCTTACCATATGGGGGTATTTCGATCATCTTACCCTA-AGGGGGTATTTCAGCAC-TCTTAC
*
49083654 CCTATAGGGGTATTT
64 CATATAGGGGTATTT
49083669 TGGTTATTTT
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 1 0.01
81 67 0.97
82 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.38
Consensus pattern (81 bp):
TCATCTTACCATATGGGGGTATTTCGATCATCTTACCCTAAGGGGGTATTTCAGCACTCTTACCA
TATAGGGGTATTTCGA
Found at i:49086451 original size:27 final size:27
Alignment explanation
Indices: 49086412--49086669 Score: 340
Period size: 27 Copynumber: 9.5 Consensus size: 27
49086402 GCCATAACAG
49086412 TCATTTTACCCTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGA
* * *
49086439 TCATCTTAACCTATGGGGGTATTTCAA
1 TCATTTTACCCTATGGGGGTATTTCGA
* * * *
49086466 TCATCTTACCATATGGGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGA
* *
49086493 TCATTTTATCCTATGAGGGTATTTC-A
1 TCATTTTACCCTATGGGGGTATTTCGA
* * *
49086519 GTCATTTTACTCC-ATAGGGGTATTTTGG
1 -TCATTTTAC-CCTATGGGGGTATTTCGA
*
49086547 TCATTTTTACCCTATGGGGGTATTTTGA
1 TCA-TTTTACCCTATGGGGGTATTTCGA
49086575 TCATTTTACCCTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGA
*
49086602 TCATTTTACCCTATGGGGGTATTTCGT
1 TCATTTTACCCTATGGGGGTATTTCGA
*
49086629 TCATTTTACCCTATGGGGGTATTTCGT
1 TCATTTTACCCTATGGGGGTATTTCGA
49086656 TCATTTTACCCTAT
1 TCATTTTACCCTAT
49086670 AAGAGAATTT
Statistics
Matches: 203, Mismatches: 23, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
27 179 0.88
28 24 0.12
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.43
Consensus pattern (27 bp):
TCATTTTACCCTATGGGGGTATTTCGA
Found at i:49086703 original size:136 final size:135
Alignment explanation
Indices: 49086411--49086692 Score: 406
Period size: 136 Copynumber: 2.1 Consensus size: 135
49086401 AGCCATAACA
49086411 GTCATTTTACCCTATGGGGGTATTTCGATCATCTTAACCTATGGGGGTATTTCAATCATCTTACC
1 GTCATTTTACCCTATGGGGGTATTTCGATCATCTTAACCTATGGGGGTATTTCAATCATCTTACC
* * * * *
49086476 ATATGGGGGTATTTTGGTCATTTTATCCTATGAGGGTATTTCAGTCATTTTACTCCATAGGGGTA
66 ATATGGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCAGTCATTTTACTCCATAAGAGAA
49086541 TTTTG
131 TTTTG
* * * * *
49086546 GTCATTTTTACCCTATGGGGGTATTTTGATCATTTTACCCTATGGGGGTATTTCGATCATTTTAC
1 GTCA-TTTTACCCTATGGGGGTATTTCGATCATCTTAACCTATGGGGGTATTTCAATCATCTTAC
* * *
49086611 CCTATGGGGGTATTTCGTTCATTTTACCCTATGGGGGTATTTC-GTTCATTTTAC-CCTATAAGA
65 CATATGGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCAG-TCATTTTACTCC-ATAAGA
49086674 GAATTTTG
128 GAATTTTG
49086682 GTCATTTTACC
1 GTCATTTTACC
49086693 TATTTTGGGG
Statistics
Matches: 131, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
135 14 0.11
136 117 0.89
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.43
Consensus pattern (135 bp):
GTCATTTTACCCTATGGGGGTATTTCGATCATCTTAACCTATGGGGGTATTTCAATCATCTTACC
ATATGGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCAGTCATTTTACTCCATAAGAGAA
TTTTG
Found at i:49088392 original size:50 final size:50
Alignment explanation
Indices: 49088277--49088469 Score: 260
Period size: 50 Copynumber: 3.8 Consensus size: 50
49088267 GATAATAACA
* * * ** *
49088277 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGAGATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * **
49088328 TGCCCATGCCATGTCCCAAACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
49088378 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
49088428 TGCCAACGCCATGTCCCAGACATGGTCTAACATGGGATCTCT
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCT
49088470 TTACCCAAAT
Statistics
Matches: 126, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
50 95 0.75
51 31 0.25
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.25
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:49091456 original size:18 final size:18
Alignment explanation
Indices: 49091433--49091468 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
49091423 ATATAATAAA
*
49091433 ATAATTTTGAAGTCTCTT
1 ATAATTTTAAAGTCTCTT
49091451 ATAATTTTAAAGTCTCTT
1 ATAATTTTAAAGTCTCTT
49091469 TTAAAACAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.11, G:0.08, T:0.50
Consensus pattern (18 bp):
ATAATTTTAAAGTCTCTT
Found at i:49092108 original size:121 final size:121
Alignment explanation
Indices: 49091967--49092190 Score: 362
Period size: 121 Copynumber: 1.9 Consensus size: 121
49091957 ATCTCAACAT
*
49091967 AACTTTTCTTTTTTTAGTTCTCTAGTCATATG-GTGATTGAAACCATTGCATATCTCCATACTTT
1 AACTTTTCTTTTTTTAGTTCTCTACTCATATGCG-GATTGAAACCATTGCATATCTCCATACTTT
* * *
49092031 GAAGATTGTAGTAGATTTGGGTCATCAAAGTGTCATATTTCATTATAATGAATAAAA
65 GAAGATTGTAGTAGATTTGAGACATCAAAATGTCATATTTCATTATAATGAATAAAA
* *
49092088 AACTTTTCTTCTTTTT-GTTCTCTACTCATATGCGGATTGAAACCATTGCATGTCTCCATGCTTT
1 AACTTTTCTT-TTTTTAGTTCTCTACTCATATGCGGATTGAAACCATTGCATATCTCCATACTTT
49092152 GAAGATTGTAGTAGATTTGAGACATCAAAATGTCATATT
65 GAAGATTGTAGTAGATTTGAGACATCAAAATGTCATATT
49092191 AGAAGAAGAT
Statistics
Matches: 95, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
121 89 0.94
122 6 0.06
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (121 bp):
AACTTTTCTTTTTTTAGTTCTCTACTCATATGCGGATTGAAACCATTGCATATCTCCATACTTTG
AAGATTGTAGTAGATTTGAGACATCAAAATGTCATATTTCATTATAATGAATAAAA
Found at i:49097884 original size:16 final size:16
Alignment explanation
Indices: 49097863--49097893 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
49097853 AAATTAGAAT
49097863 CAAATTATTCATTTTG
1 CAAATTATTCATTTTG
49097879 CAAATTATTCATTTT
1 CAAATTATTCATTTT
49097894 AGTTCCTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.13, G:0.03, T:0.52
Consensus pattern (16 bp):
CAAATTATTCATTTTG
Found at i:49100916 original size:72 final size:73
Alignment explanation
Indices: 49100799--49100953 Score: 260
Period size: 72 Copynumber: 2.1 Consensus size: 73
49100789 ACAAGTCCCA
*
49100799 TGTCGTGACACCTTAGTGCTTGTATGGTGACATCAAAGGTAGTATGCAAGGTTTA-GGATAGCTT
1 TGTCGTGACACCTTAGTGCTTGTATGGTGACATCAAAGGAAGTATGCAAGGTTTAGGGATAGCTT
49100863 CAAGGGTG
66 CAAGGGTG
* *
49100871 TGTCGCGACACCTTAGTGCATT-TATGGTGACATCAAAGGAAGTATGCAAGGTTTAGGGGTAGCT
1 TGTCGTGACACCTTAGTGC-TTGTATGGTGACATCAAAGGAAGTATGCAAGGTTTAGGGATAGCT
49100935 TCAAGGGTG
65 TCAAGGGTG
49100944 TGTCGTGACA
1 TGTCGTGACA
49100954 TCCCATGGTT
Statistics
Matches: 77, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
72 50 0.65
73 27 0.35
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (73 bp):
TGTCGTGACACCTTAGTGCTTGTATGGTGACATCAAAGGAAGTATGCAAGGTTTAGGGATAGCTT
CAAGGGTG
Found at i:49109434 original size:50 final size:50
Alignment explanation
Indices: 49109356--49109598 Score: 335
Period size: 50 Copynumber: 4.8 Consensus size: 50
49109346 ATTTGGGTAA
*
49109356 AGAGGTCTCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATG
* * * *
49109406 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGCCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATG
**
49109456 AGAGGTCCTTTGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATG
* ** * *
49109506 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATG
**
49109556 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCT-TTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGG-TGTTGGCA
49109599 TGTTATTATC
Statistics
Matches: 169, Mismatches: 22, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
50 135 0.80
51 34 0.20
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATG
Found at i:49130152 original size:15 final size:15
Alignment explanation
Indices: 49130132--49130176 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
49130122 CCAGGCCCAT
49130132 TAAAACCAAATAAAA
1 TAAAACCAAATAAAA
*
49130147 TAAAACCAGATAAAA
1 TAAAACCAAATAAAA
*
49130162 -AAGACCAAAATAAAA
1 TAAAACC-AAATAAAA
49130177 ATAATGTCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
14 5 0.19
15 21 0.81
ACGTcount: A:0.71, C:0.13, G:0.04, T:0.11
Consensus pattern (15 bp):
TAAAACCAAATAAAA
Found at i:49139068 original size:14 final size:15
Alignment explanation
Indices: 49139051--49139079 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
49139041 TAATAACTAG
49139051 TATATAAT-TATATT
1 TATATAATATATATT
49139065 TATATAATATATATT
1 TATATAATATATATT
49139080 AATTATTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TATATAATATATATT
Found at i:49139399 original size:28 final size:28
Alignment explanation
Indices: 49139368--49139428 Score: 104
Period size: 28 Copynumber: 2.2 Consensus size: 28
49139358 TCGGCACCAG
*
49139368 CAGCCCCAACGCACATCGTGTACGCCAA
1 CAGCCCCAACGCACACCGTGTACGCCAA
*
49139396 CAGCCCCAACGCACACCGTGTGCGCCAA
1 CAGCCCCAACGCACACCGTGTACGCCAA
49139424 CAGCC
1 CAGCC
49139429 TAGCAACTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.26, C:0.46, G:0.20, T:0.08
Consensus pattern (28 bp):
CAGCCCCAACGCACACCGTGTACGCCAA
Found at i:49141220 original size:69 final size:70
Alignment explanation
Indices: 49141088--49141220 Score: 214
Period size: 69 Copynumber: 1.9 Consensus size: 70
49141078 TAGTTTATTA
* * * * *
49141088 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
49141153 CTTAG
66 CTTAG
49141158 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
49141221 GTTATGTGCT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 35 0.60
70 23 0.40
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:49143071 original size:48 final size:48
Alignment explanation
Indices: 49143000--49143239 Score: 390
Period size: 48 Copynumber: 5.0 Consensus size: 48
49142990 CACAAGATTA
49143000 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
49143048 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * *
49143096 GGATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
*
49143146 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * * *
49143194 AGATACGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAGTATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
49143240 GGAGGTGTGG
Statistics
Matches: 180, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
48 134 0.74
49 4 0.02
50 42 0.23
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:49143255 original size:98 final size:96
Alignment explanation
Indices: 49143000--49143239 Score: 390
Period size: 98 Copynumber: 2.5 Consensus size: 96
49142990 CACAAGATTA
49143000 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
49143065 AAAGCCGAATGGCTAATGTGAAATATGTATG
66 AAAGCCGAATGGCTAATGTGAAATATGTATG
* * *
49143096 GGATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTG
*
49143161 GTAAAGCCGAATGGCTAGTGTGAAATATGTATG
64 GTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * * *
49143194 AGATACGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAGTATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
49143240 GGAGGTGTGG
Statistics
Matches: 131, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
96 40 0.31
97 4 0.03
98 87 0.66
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (96 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:49143430 original size:37 final size:37
Alignment explanation
Indices: 49143375--49143489 Score: 169
Period size: 37 Copynumber: 3.1 Consensus size: 37
49143365 ACATGAAACT
49143375 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
1 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
*
49143412 TGGAAATATATTCTGGGTAAGACCCGATGACTACGTG
1 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
* * * *
49143449 TGGAGAT-TTTGTCCGGGTAAGACCCGATAACTTCGTG
1 TGGAAATATAT-TCCGGGTAAGACCCGATGACTACGTG
49143486 TGGA
1 TGGA
49143490 GATTTCATCT
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
36 2 0.03
37 69 0.97
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (37 bp):
TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
Found at i:49150157 original size:39 final size:39
Alignment explanation
Indices: 49150114--49150209 Score: 129
Period size: 39 Copynumber: 2.5 Consensus size: 39
49150104 TTATATAATT
* *
49150114 ATACCCCTAATCGCACTTACGTGACCCTGTTGTACTTCA
1 ATACCCCTGATCGCACTTACATGACCCTGTTGTACTTCA
* * **
49150153 ATACCCCTGATCACACTTACATGCCCCTGTTGTACTTTG
1 ATACCCCTGATCGCACTTACATGACCCTGTTGTACTTCA
*
49150192 GTACCCCTGATCGCACTT
1 ATACCCCTGATCGCACTT
49150210 TTGCGTCGTG
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 49 1.00
ACGTcount: A:0.21, C:0.34, G:0.14, T:0.31
Consensus pattern (39 bp):
ATACCCCTGATCGCACTTACATGACCCTGTTGTACTTCA
Found at i:49160938 original size:111 final size:111
Alignment explanation
Indices: 49160744--49160965 Score: 444
Period size: 111 Copynumber: 2.0 Consensus size: 111
49160734 CAATACCATG
49160744 CATGTAGTTGTATTGTTGTATTAAAGTTTGTTAATATGTACAGACATTTAGAAAAAGTAGTGTAT
1 CATGTAGTTGTATTGTTGTATTAAAGTTTGTTAATATGTACAGACATTTAGAAAAAGTAGTGTAT
49160809 GTTTATATGGTATACATATATCACTACTCTCTCTCTTAGACAACAA
66 GTTTATATGGTATACATATATCACTACTCTCTCTCTTAGACAACAA
49160855 CATGTAGTTGTATTGTTGTATTAAAGTTTGTTAATATGTACAGACATTTAGAAAAAGTAGTGTAT
1 CATGTAGTTGTATTGTTGTATTAAAGTTTGTTAATATGTACAGACATTTAGAAAAAGTAGTGTAT
49160920 GTTTATATGGTATACATATATCACTACTCTCTCTCTTAGACAACAA
66 GTTTATATGGTATACATATATCACTACTCTCTCTCTTAGACAACAA
49160966 TACTTCATCA
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
111 111 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (111 bp):
CATGTAGTTGTATTGTTGTATTAAAGTTTGTTAATATGTACAGACATTTAGAAAAAGTAGTGTAT
GTTTATATGGTATACATATATCACTACTCTCTCTCTTAGACAACAA
Found at i:49161300 original size:25 final size:25
Alignment explanation
Indices: 49161258--49161351 Score: 75
Period size: 25 Copynumber: 3.7 Consensus size: 25
49161248 TTCTCTTCAC
* *
49161258 TTTTTTTCCAACTAATAAGAATGTA
1 TTTTTTTTCAATTAATAAGAATGTA
* * *
49161283 TTTTTTTTCAATTTATAACGATTAATA
1 TTTTTTTTCAATTAATAA-GAAT-GTA
**
49161310 TTGTAGTTT-AA-TAATAAGAATGTA
1 TT-TTTTTTCAATTAATAAGAATGTA
*
49161334 TTTTTTTTCAATTTATAA
1 TTTTTTTTCAATTAATAA
49161352 CGATTAATAT
Statistics
Matches: 51, Mismatches: 13, Indels: 10
0.69 0.18 0.14
Matches are distributed among these distances:
23 4 0.08
24 6 0.12
25 23 0.45
26 8 0.16
27 6 0.12
28 4 0.08
ACGTcount: A:0.35, C:0.06, G:0.07, T:0.51
Consensus pattern (25 bp):
TTTTTTTTCAATTAATAAGAATGTA
Found at i:49161383 original size:48 final size:51
Alignment explanation
Indices: 49161270--49161375 Score: 212
Period size: 51 Copynumber: 2.1 Consensus size: 51
49161260 TTTTTCCAAC
49161270 TAATAAGAATGTATTTTTTTTCAATTTATAACGATTAATATTGTAGTTTAA
1 TAATAAGAATGTATTTTTTTTCAATTTATAACGATTAATATTGTAGTTTAA
49161321 TAATAAGAATGTATTTTTTTTCAATTTATAACGATTAATATTGTAGTTTAA
1 TAATAAGAATGTATTTTTTTTCAATTTATAACGATTAATATTGTAGTTTAA
49161372 TAAT
1 TAAT
49161376 TGAGTATTAT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.38, C:0.04, G:0.09, T:0.49
Consensus pattern (51 bp):
TAATAAGAATGTATTTTTTTTCAATTTATAACGATTAATATTGTAGTTTAA
Found at i:49161595 original size:34 final size:35
Alignment explanation
Indices: 49161542--49161608 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
49161532 CAAACACCAG
*
49161542 AAAATATTTTTCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
*
49161577 AAAATATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
49161609 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.10, G:0.09, T:0.34
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:49162694 original size:24 final size:23
Alignment explanation
Indices: 49162659--49162708 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 23
49162649 ATAAAGTAGT
*
49162659 TATATATTATTTTTA-TAATATTA
1 TATATATGATTTTTATTAAT-TTA
49162682 TATATTATGATTTTTATTAATTTA
1 TATA-TATGATTTTTATTAATTTA
49162706 TAT
1 TAT
49162709 TTTAATAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 4 0.17
24 16 0.67
25 4 0.17
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (23 bp):
TATATATGATTTTTATTAATTTA
Found at i:49162722 original size:16 final size:18
Alignment explanation
Indices: 49162683--49162722 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 18
49162673 ATAATATTAT
*
49162683 ATATTATGATTTTTATTA
1 ATATTATGATTTTTAATA
49162701 AT-TTAT-A-TTTTAATA
1 ATATTATGATTTTTAATA
49162716 ATATTAT
1 ATATTAT
49162723 TAAAAATGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
15 9 0.45
16 5 0.25
17 4 0.20
18 2 0.10
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (18 bp):
ATATTATGATTTTTAATA
Found at i:49162805 original size:57 final size:57
Alignment explanation
Indices: 49162682--49162845 Score: 192
Period size: 60 Copynumber: 2.8 Consensus size: 57
49162672 TATAATATTA
* *
49162682 TATATTATGATTTTTATTAATTTATATTTTAATAAT-ATTA-TTAAAAATGTTATTAAAT
1 TATA-TATTATTTTTATTAAATTATA-TTTAATAATAATTATTTAAAAATG-TATTAAAT
49162740 TATATATTA-TTTTATTAAATTATATTTAATAATAATTATGTTAAAACATG-ATTAAAT
1 TATATATTATTTTTATTAAATTATATTTAATAATAATTAT-TTAAAA-ATGTATTAAAT
* *
49162797 TATTTATTATTCTTTTATTAAATTATATTTAATAATAATTTTATTAAAA
1 TATATATTA-T-TTTTATTAAATTATATTTAATAATAATTAT-TTAAAA
49162846 TTTAAAAACA
Statistics
Matches: 94, Mismatches: 5, Indels: 12
0.85 0.05 0.11
Matches are distributed among these distances:
55 9 0.10
56 18 0.19
57 19 0.20
58 10 0.11
59 3 0.03
60 35 0.37
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (57 bp):
TATATATTATTTTTATTAAATTATATTTAATAATAATTATTTAAAAATGTATTAAAT
Found at i:49163024 original size:16 final size:18
Alignment explanation
Indices: 49162988--49163024 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
49162978 ATTTTATTCA
49162988 ACAACTGAATTACTGATT
1 ACAACTGAATTACTGATT
*
49163006 ACAACTGTATT-CT-ATT
1 ACAACTGAATTACTGATT
49163022 ACA
1 ACA
49163025 GCTCTATTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 6 0.33
17 2 0.11
18 10 0.56
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (18 bp):
ACAACTGAATTACTGATT
Found at i:49169473 original size:253 final size:255
Alignment explanation
Indices: 49169023--49169535 Score: 994
Period size: 253 Copynumber: 2.0 Consensus size: 255
49169013 TTAATAAACA
49169023 TTTTCTATAACCTCAAATCCACCTTCGTTTTTTTTCTTTTTTTTCCCCTTTTTTTTTACTTTCCT
1 TTTTCTATAACCTCAAATCCACCTTCGTTTTTTTTCTTTTTTTTCCCCTTTTTTTTTACTTTCCT
*
49169088 AGACTCCAAACAGAACTTGACTATCACAACAATCGGCTAAAGTCATTTCTTACAAAATTAAAACC
66 AGACTCCAAACAGAACTTGACTATCACAACAATCAGCTAAAGTCATTTCTTACAAAATTAAAACC
49169153 CCCAAAAAGAACACATTTCTAAAACCATTTACATAACCAGAAATCTCTATCCATCCTGCTTAACC
131 CCCAAAAAGAACACATTTCTAAAACCATTTACATAACCAGAAATCTCTATCCATCCTGCTTAACC
49169218 CATCAACTAAAAAGAGACTTTAAGTAACAAAAAAGAACAAATTTCAGAACCCATCTCTTT
196 CATCAACTAAAAAGAGACTTTAAGTAACAAAAAAGAACAAATTTCAGAACCCATCTCTTT
49169278 TTTTCTATAACCTCAAATCCACCTTCGTTTTTTTTC-TTTTTTT-CCCTTTTTTTTTACTTTCCT
1 TTTTCTATAACCTCAAATCCACCTTCGTTTTTTTTCTTTTTTTTCCCCTTTTTTTTTACTTTCCT
*
49169341 AGACTCGAAACAGAACTTGACTATCACAACAATCAGCTAAAGTCATTTCTTACAAAATTAAAACC
66 AGACTCCAAACAGAACTTGACTATCACAACAATCAGCTAAAGTCATTTCTTACAAAATTAAAACC
49169406 CCCAAAAAGAACACATTTCTAAAACCATTTACATAACCAGAAATCTCTATCCATCCTGCTTAACC
131 CCCAAAAAGAACACATTTCTAAAACCATTTACATAACCAGAAATCTCTATCCATCCTGCTTAACC
49169471 CATCAACTAAAAAGAGACTTTAAGTAACAAAAAAGAACAAATTTCAGAACCCATCTCTTT
196 CATCAACTAAAAAGAGACTTTAAGTAACAAAAAAGAACAAATTTCAGAACCCATCTCTTT
49169531 TTTTC
1 TTTTC
49169536 ATTTTCCCAC
Statistics
Matches: 256, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
253 213 0.83
254 7 0.03
255 36 0.14
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (255 bp):
TTTTCTATAACCTCAAATCCACCTTCGTTTTTTTTCTTTTTTTTCCCCTTTTTTTTTACTTTCCT
AGACTCCAAACAGAACTTGACTATCACAACAATCAGCTAAAGTCATTTCTTACAAAATTAAAACC
CCCAAAAAGAACACATTTCTAAAACCATTTACATAACCAGAAATCTCTATCCATCCTGCTTAACC
CATCAACTAAAAAGAGACTTTAAGTAACAAAAAAGAACAAATTTCAGAACCCATCTCTTT
Found at i:49175667 original size:27 final size:25
Alignment explanation
Indices: 49175619--49175673 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
49175609 CCGAAATTAA
49175619 ATATATTTGATTAAAAATAAAATAT
1 ATATATTTGATTAAAAATAAAATAT
49175644 ATATATTTGATTAAAAATTAAAA-AT
1 ATATATTTGATTAAAAA-TAAAATAT
49175669 ATATA
1 ATATA
49175674 ATTCGGGCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 24 0.83
26 5 0.17
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (25 bp):
ATATATTTGATTAAAAATAAAATAT
Found at i:49176532 original size:28 final size:29
Alignment explanation
Indices: 49176491--49176547 Score: 98
Period size: 28 Copynumber: 2.0 Consensus size: 29
49176481 GACATTCCCA
49176491 ACATATCTCAAAAAAAAAAAGTCTAAGAT
1 ACATATCTCAAAAAAAAAAAGTCTAAGAT
*
49176520 ACATGTCT-AAAAAAAAAAAGTCTAAGAT
1 ACATATCTCAAAAAAAAAAAGTCTAAGAT
49176548 GCAAAGTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 20 0.74
29 7 0.26
ACGTcount: A:0.58, C:0.12, G:0.09, T:0.21
Consensus pattern (29 bp):
ACATATCTCAAAAAAAAAAAGTCTAAGAT
Found at i:49181697 original size:20 final size:20
Alignment explanation
Indices: 49181649--49181697 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
49181639 ATCTTCTTTC
*
49181649 ATCCTTCATTTTATTTTCTT
1 ATCCTTCAGTTTATTTTCTT
*
49181669 ATCCCTCAGTTTATTTTCTT
1 ATCCTTCAGTTTATTTTCTT
*
49181689 ATCTTTCAG
1 ATCCTTCAG
49181698 CTAATTGATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.16, C:0.22, G:0.04, T:0.57
Consensus pattern (20 bp):
ATCCTTCAGTTTATTTTCTT
Found at i:49182419 original size:21 final size:22
Alignment explanation
Indices: 49182371--49182429 Score: 59
Period size: 21 Copynumber: 2.7 Consensus size: 22
49182361 AAGGGATGTG
*
49182371 AGTACTAAAGTAAATCTAATCT
1 AGTACTTAAGTAAATCTAATCT
* *
49182393 A-AACTTAAGTAGATCTAAT-T
1 AGTACTTAAGTAAATCTAATCT
*
49182413 AGTACTTTAACTAAATC
1 AGTAC-TTAAGTAAATC
49182430 ATACTACGAT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
20 2 0.07
21 17 0.59
22 10 0.34
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.34
Consensus pattern (22 bp):
AGTACTTAAGTAAATCTAATCT
Found at i:49184135 original size:18 final size:18
Alignment explanation
Indices: 49184112--49184146 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
49184102 CAAAAACATG
*
49184112 AAGCATCAAAATGGTTTC
1 AAGCATCAAAATAGTTTC
*
49184130 AAGCATGAAAATAGTTT
1 AAGCATCAAAATAGTTT
49184147 GGCACATCGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.11, G:0.17, T:0.29
Consensus pattern (18 bp):
AAGCATCAAAATAGTTTC
Found at i:49189310 original size:16 final size:16
Alignment explanation
Indices: 49189280--49189309 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
49189270 TTTTGTTTAA
49189280 ATTTAAATAAATTTTC
1 ATTTAAATAAATTTTC
49189296 ATTTAAAT-AATTTT
1 ATTTAAATAAATTTT
49189310 TATATGTACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
ATTTAAATAAATTTTC
Found at i:49195559 original size:27 final size:27
Alignment explanation
Indices: 49195526--49195911 Score: 471
Period size: 27 Copynumber: 14.3 Consensus size: 27
49195516 GTAATGGGCC
*
49195526 TAAAATTACTGAAATACCCACGATGGG
1 TAAAATTACTGAAATACCCTCGATGGG
49195553 TAAAATTACTGAAATACCCTCGATGGG
1 TAAAATTACTGAAATACCCTCGATGGG
** *
49195580 TAAAATTACCAAAATACCCTTGATGGG
1 TAAAATTACTGAAATACCCTCGATGGG
*
49195607 TAAAATTA-TCGAAATACACTCGATGGG
1 TAAAATTACT-GAAATACCCTCGATGGG
*
49195634 TAAAATTACTGAAATACCCCCGAAT-GG
1 TAAAATTACTGAAATACCCTCG-ATGGG
**
49195661 T-AAATTACCAAAATACCC-CTGATGGG
1 TAAAATTACTGAAATACCCTC-GATGGG
**
49195687 TAAAATTACTGAAATACCCTTAATGGG
1 TAAAATTACTGAAATACCCTCGATGGG
* **
49195714 TAAAATTACCGAAATACCCTTAATGGG
1 TAAAATTACTGAAATACCCTCGATGGG
*
49195741 TAAAATTACTAAAATACCCTCGATGGG
1 TAAAATTACTGAAATACCCTCGATGGG
*
49195768 TAAAATTATTGAAATACCCTCGATGGG
1 TAAAATTACTGAAATACCCTCGATGGG
** * *
49195795 TAAAATTTTTGAAATACCTTTGATGGG
1 TAAAATTACTGAAATACCCTCGATGGG
*
49195822 TAAAATTACTAAAATACCC-CTGATGGG
1 TAAAATTACTGAAATACCCTC-GATGGG
*
49195849 TAAAATT-GTCGAAATACCCTCGATGGG
1 TAAAATTACT-GAAATACCCTCGATGGG
*
49195876 TAAAATTATTGAAATACCC-CTGATGGG
1 TAAAATTACTGAAATACCCTC-GATGGG
49195903 TAAAATTAC
1 TAAAATTAC
49195912 CGTAATAGCC
Statistics
Matches: 312, Mismatches: 35, Indels: 24
0.84 0.09 0.06
Matches are distributed among these distances:
25 3 0.01
26 21 0.07
27 283 0.91
28 5 0.02
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGATGGG
Found at i:49195663 original size:81 final size:81
Alignment explanation
Indices: 49195526--49195936 Score: 528
Period size: 81 Copynumber: 5.1 Consensus size: 81
49195516 GTAATGGGCC
*
49195526 TAAAATTA-CTGAAATACCCACGATGGGTAAAATTACTGAAATA-CCCTCGATGGGTAAAATTAC
1 TAAAATTATC-GAAATACCCTCGATGGGTAAAATTACTGAAATACCCCT-GATGGGTAAAATTAC
*
49195589 CAAAATACCCTTGATGGG
64 CAAAATACCCCTGATGGG
* *
49195607 TAAAATTATCGAAATACACTCGATGGGTAAAATTACTGAAATACCCCCGAAT-GGT-AAATTACC
1 TAAAATTATCGAAATACCCTCGATGGGTAAAATTACTGAAATACCCCTG-ATGGGTAAAATTACC
49195670 AAAATACCCCTGATGGG
65 AAAATACCCCTGATGGG
** * * * *
49195687 TAAAATTA-CTGAAATACCCTTAATGGGTAAAATTACCGAAATACCCTTAATGGGTAAAATTACT
1 TAAAATTATC-GAAATACCCTCGATGGGTAAAATTACTGAAATACCCCTGATGGGTAAAATTACC
49195751 AAAATA-CCCTCGATGGG
65 AAAATACCCCT-GATGGG
* ** ** *
49195768 TAAAATTATTGAAATACCCTCGATGGGTAAAATTTTTGAAATACCTTTGATGGGTAAAATTACTA
1 TAAAATTATCGAAATACCCTCGATGGGTAAAATTACTGAAATACCCCTGATGGGTAAAATTACCA
49195833 AAATACCCCTGATGGG
66 AAATACCCCTGATGGG
* * *
49195849 TAAAATTGTCGAAATACCCTCGATGGGTAAAATTATTGAAATACCCCTGATGGGTAAAATTACCG
1 TAAAATTATCGAAATACCCTCGATGGGTAAAATTACTGAAATACCCCTGATGGGTAAAATTACCA
* * *
49195914 TAATAGCCCTGTTAGGG
66 AAATACCCCTGAT-GGG
49195931 TAAAAT
1 TAAAAT
49195937 GACTGCTAGG
Statistics
Matches: 290, Mismatches: 30, Indels: 19
0.86 0.09 0.06
Matches are distributed among these distances:
79 3 0.01
80 71 0.24
81 197 0.68
82 19 0.07
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (81 bp):
TAAAATTATCGAAATACCCTCGATGGGTAAAATTACTGAAATACCCCTGATGGGTAAAATTACCA
AAATACCCCTGATGGG
Found at i:49196129 original size:27 final size:27
Alignment explanation
Indices: 49196078--49196166 Score: 83
Period size: 27 Copynumber: 3.3 Consensus size: 27
49196068 ATTTCTACTA
*
49196078 GCTCTACCACACACATACTGATACTGGTG
1 GCTCTGCCACACAC-TACTG-TACTGGTG
49196107 GCTCTGCCACA-ACTACTGTTACTGGTG
1 GCTCTGCCACACACTACTG-TACTGGTG
* * * **
49196134 GCTTTGCCTCATA-TACTGTACTGGCA
1 GCTCTGCCACACACTACTGTACTGGTG
49196160 GCTCTGC
1 GCTCTGC
49196167 TGCATTATTA
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
26 12 0.23
27 27 0.52
28 3 0.06
29 10 0.19
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.29
Consensus pattern (27 bp):
GCTCTGCCACACACTACTGTACTGGTG
Found at i:49200832 original size:20 final size:20
Alignment explanation
Indices: 49200809--49200901 Score: 64
Period size: 20 Copynumber: 4.7 Consensus size: 20
49200799 TGCCTCTATT
49200809 TACAATTTGGTGCCCCTGTA
1 TACAATTTGGTGCCCCTGTA
* * * *
49200829 TACACTTGGGTGTCCCTAT-
1 TACAATTTGGTGCCCCTGTA
* * ** *
49200848 TCGCACTACGGTGCCCCTGTT
1 T-ACAATTTGGTGCCCCTGTA
*
49200869 TACACATGT-GTGCCCCTGTA
1 TACA-ATTTGGTGCCCCTGTA
49200889 TACAATTTGGTGC
1 TACAATTTGGTGC
49200902 TCTTGTTATG
Statistics
Matches: 54, Mismatches: 15, Indels: 8
0.70 0.19 0.10
Matches are distributed among these distances:
19 4 0.07
20 48 0.89
21 2 0.04
ACGTcount: A:0.17, C:0.28, G:0.22, T:0.33
Consensus pattern (20 bp):
TACAATTTGGTGCCCCTGTA
Found at i:49203478 original size:28 final size:27
Alignment explanation
Indices: 49203415--49203479 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
49203405 GTACAACATG
* *
49203415 CAGTAGCAGTCTGGGCCTGAACCCTAA
1 CAGTAACAGTCTGGGCCTGAACCCAAA
* * * *
49203442 CAGCAACAGTGTGGGCCTTAGCCCAATA
1 CAGTAACAGTCTGGGCCTGAACCCAA-A
49203470 CAGTAACAGT
1 CAGTAACAGT
49203480 ACAATGCAGT
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
27 20 0.67
28 10 0.33
ACGTcount: A:0.29, C:0.28, G:0.25, T:0.18
Consensus pattern (27 bp):
CAGTAACAGTCTGGGCCTGAACCCAAA
Found at i:49203642 original size:26 final size:26
Alignment explanation
Indices: 49203585--49203658 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 26
49203575 ACATCATCGC
* * **
49203585 AGCAAAGTTGCCAATAATAGTGATGCA
1 AGCAAAGCTGCCAGTAATAGT-AACCA
49203612 A-CAAAGCTGCCAGTAATAGTAACCA
1 AGCAAAGCTGCCAGTAATAGTAACCA
*
49203637 AGCAAAGCTGCCAGTAACAGTA
1 AGCAAAGCTGCCAGTAATAGTA
49203659 TATGTAGCAA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
25 4 0.10
26 36 0.88
27 1 0.02
ACGTcount: A:0.42, C:0.20, G:0.20, T:0.18
Consensus pattern (26 bp):
AGCAAAGCTGCCAGTAATAGTAACCA
Found at i:49203862 original size:27 final size:27
Alignment explanation
Indices: 49203831--49204138 Score: 395
Period size: 27 Copynumber: 11.4 Consensus size: 27
49203821 AGGGGTATGA
* *
49203831 CAGTCACTTTACCCTTTGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* * * *
49203858 TAGTCATTTTACCCTTTGAGGTTCTTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
49203885 CGGTCATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* *
49203912 CAGTCATTTTAACCTTTGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
49203939 C-GATCATTTTACCCTTTTG-GGGTATTT
1 CAG-TCATTTTACCC-TTCGAGGGTATTT
** * *
49203966 TGGTCATTTTACCCTTCGAAGATATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
49203993 CAGTCATTTTACCCTTCGGGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
49204020 CAGTCATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
49204047 CGGTCATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
***
49204074 TTTTCATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* *
49204101 CGGTCATTTTACCCTTTGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
49204128 CAGTCATTTTA
1 CAGTCATTTTA
49204139 GGCCCATTAC
Statistics
Matches: 245, Mismatches: 32, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.02
27 236 0.96
28 5 0.02
ACGTcount: A:0.17, C:0.20, G:0.19, T:0.44
Consensus pattern (27 bp):
CAGTCATTTTACCCTTCGAGGGTATTT
Found at i:49214019 original size:24 final size:24
Alignment explanation
Indices: 49213913--49214019 Score: 90
Period size: 25 Copynumber: 4.4 Consensus size: 24
49213903 ACGAGCTTTG
* *
49213913 AATCGGTATGCTCTTACGAGCTGTA
1 AATCGGTAAGCTCATACGAGCTG-A
* * * *
49213938 AA-CGATAAGCTCCTTCGAGTTGA
1 AATCGGTAAGCTCATACGAGCTGA
* * * *
49213961 ATAACAGTAAGCTCATGCGAGCTAA
1 A-ATCGGTAAGCTCATACGAGCTGA
49213986 GAATCGGTAAGCTCATACGAGCTGA
1 -AATCGGTAAGCTCATACGAGCTGA
49214011 AATCGGTAA
1 AATCGGTAA
49214020 CCCTAATGAC
Statistics
Matches: 64, Mismatches: 15, Indels: 7
0.74 0.17 0.08
Matches are distributed among these distances:
23 2 0.03
24 25 0.39
25 36 0.56
26 1 0.02
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (24 bp):
AATCGGTAAGCTCATACGAGCTGA
Found at i:49217184 original size:27 final size:27
Alignment explanation
Indices: 49217132--49217349 Score: 93
Period size: 27 Copynumber: 8.1 Consensus size: 27
49217122 ACATAAGGCC
*
49217132 ATAACAGTCATTTCATCTCCTA--GGGGT
1 ATAACAGTCATTTTA-C-CCTATGGGGGT
* *
49217159 ATAACAGTTATTTTACTCTATGGGGGT
1 ATAACAGTCATTTTACCCTATGGGGGT
** *
49217186 ATTTCGGTCATTTTACCCTATGGGGGT
1 ATAACAGTCATTTTACCCTATGGGGGT
**** *
49217213 ATTTTGGTTATTTTACCCTATGGAGGG-
1 ATAACAGTCATTTTACCCTATGG-GGGT
* * * * *
49217240 AGT-TCGGTCAGTTTACCCGATGGGAGT
1 A-TAACAGTCATTTTACCCTATGGGGGT
** * * * *
49217267 ATTTCGGTCATTTTACCATATGAGGTT
1 ATAACAGTCATTTTACCCTATGGGGGT
**** *
49217294 ATTTTGGTCATTTTATCCTATGGGGGT
1 ATAACAGTCATTTTACCCTATGGGGGT
** * *
49217321 ATTTCGGTCATTTTACCCTAAGGGGGT
1 ATAACAGTCATTTTACCCTATGGGGGT
49217348 AT
1 AT
49217350 TGTGCTCATT
Statistics
Matches: 156, Mismatches: 29, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
25 3 0.02
26 4 0.03
27 145 0.93
28 4 0.03
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.40
Consensus pattern (27 bp):
ATAACAGTCATTTTACCCTATGGGGGT
Found at i:49217350 original size:27 final size:27
Alignment explanation
Indices: 49217168--49217364 Score: 236
Period size: 27 Copynumber: 7.3 Consensus size: 27
49217158 TATAACAGTT
*
49217168 ATTTTACTCTATGGGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTTCGGTC
* *
49217195 ATTTTACCCTATGGGGGTATTTTGGTT
1 ATTTTACCCTATGGGGGTATTTCGGTC
*
49217222 ATTTTACCCTATGGAGGG-AGTTCGGTC
1 ATTTTACCCTATGG-GGGTATTTCGGTC
* * *
49217249 AGTTTACCCGATGGGAGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTTCGGTC
* * * *
49217276 ATTTTACCATATGAGGTTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTCGGTC
*
49217303 ATTTTATCCTATGGGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTTCGGTC
* *
49217330 ATTTTACCCTAAGGGGGTATTGT-GCTC
1 ATTTTACCCTATGGGGGTATT-TCGGTC
49217357 ATTTTACC
1 ATTTTACC
49217365 TATTTTGGGG
Statistics
Matches: 142, Mismatches: 25, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
26 2 0.01
27 136 0.96
28 4 0.03
ACGTcount: A:0.18, C:0.16, G:0.25, T:0.42
Consensus pattern (27 bp):
ATTTTACCCTATGGGGGTATTTCGGTC
Found at i:49220764 original size:28 final size:27
Alignment explanation
Indices: 49220732--49220881 Score: 194
Period size: 27 Copynumber: 5.6 Consensus size: 27
49220722 GGGTATAACA
*
49220732 GTCATTTTACTCTATGGGGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGGTATTTCG
* *
49220760 ATCATTTTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
49220787 GTTATTTTACCCTATAGGGTTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
49220814 GTCATTTTACCCTATGTGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
** *
49220841 GTCATTTTACCCTATAAGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
49220868 GTCATTTT-CCCTAT
1 GTCATTTTACCCTAT
49220882 TTTAAGGTCT
Statistics
Matches: 107, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 6 0.06
27 88 0.82
28 13 0.12
ACGTcount: A:0.17, C:0.17, G:0.21, T:0.45
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:49220855 original size:81 final size:81
Alignment explanation
Indices: 49220732--49220881 Score: 230
Period size: 81 Copynumber: 1.9 Consensus size: 81
49220722 GGGTATAACA
* ** *
49220732 GTCATTTTACTCTATGGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTTGGTTATTTTAC
1 GTCATTTTACCCTATGGGGGGTATTTCGATCATTTTACCCTATAAGGGTATTTTGGTCATTTT-C
49220797 CCTATAGGGTTATTTCG
65 CCTATAGGGTTATTTCG
* *
49220814 GTCATTTTACCCTAT-GTGGGTATTTCGGTCATTTTACCCTATAAGGGTATTTTGGTCATTTTCC
1 GTCATTTTACCCTATGGGGGGTATTTCGATCATTTTACCCTATAAGGGTATTTTGGTCATTTTCC
49220878 CTAT
66 CTAT
49220882 TTTAAGGTCT
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
80 6 0.10
81 42 0.68
82 14 0.23
ACGTcount: A:0.17, C:0.17, G:0.21, T:0.45
Consensus pattern (81 bp):
GTCATTTTACCCTATGGGGGGTATTTCGATCATTTTACCCTATAAGGGTATTTTGGTCATTTTCC
CTATAGGGTTATTTCG
Found at i:49224290 original size:27 final size:27
Alignment explanation
Indices: 49224260--49224420 Score: 155
Period size: 27 Copynumber: 6.0 Consensus size: 27
49224250 TCATCTCCTA
** *
49224260 GGGGTATAACAGTCATTTTACTCTATGG
1 GGGGTATTTCAGTCATTTTACCCTAT-G
*
49224288 GGGGTATTTC-GATCATTTTACCTTATG
1 GGGGTATTTCAG-TCATTTTACCCTATG
** * *
49224315 GGGGTATTTTGGTTATTTTACCCTATA
1 GGGGTATTTCAGTCATTTTACCCTATG
* *
49224342 GGGTTATTTCGGTCATTTTACCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
* *
49224369 TGGGTATTTCAGTCATTTTACCCTATA
1 GGGGTATTTCAGTCATTTTACCCTATG
* **
49224396 AGGGTATTTTGGTCATTTT-CCCTAT
1 GGGGTATTTCAGTCATTTTACCCTAT
49224421 TTTAAGGTCT
Statistics
Matches: 112, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
26 6 0.05
27 85 0.76
28 21 0.19
ACGTcount: A:0.19, C:0.16, G:0.21, T:0.44
Consensus pattern (27 bp):
GGGGTATTTCAGTCATTTTACCCTATG
Found at i:49224360 original size:54 final size:54
Alignment explanation
Indices: 49224260--49224420 Score: 182
Period size: 54 Copynumber: 3.0 Consensus size: 54
49224250 TCATCTCCTA
** * ** * *
49224260 GGGGTATAACAGTCATTTTACTCTATGGGGGGTATTTCGATCATTTTACCTTATG
1 GGGGTATTTCAGTCATTTTACCCTAT-AAGGGTATTTCGGTCATTTTACCCTATG
** *
49224315 GGGGTATTTTGGTTATTTTACCCTAT-AGGGTTATTTCGGTCATTTTACCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATAAGGG-TATTTCGGTCATTTTACCCTATG
* *
49224369 TGGGTATTTCAGTCATTTTACCCTATAAGGGTATTTTGGTCATTTT-CCCTAT
1 GGGGTATTTCAGTCATTTTACCCTATAAGGGTATTTCGGTCATTTTACCCTAT
49224421 TTTAAGGTCT
Statistics
Matches: 90, Mismatches: 14, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
53 9 0.10
54 57 0.63
55 24 0.27
ACGTcount: A:0.19, C:0.16, G:0.21, T:0.44
Consensus pattern (54 bp):
GGGGTATTTCAGTCATTTTACCCTATAAGGGTATTTCGGTCATTTTACCCTATG
Found at i:49224401 original size:81 final size:81
Alignment explanation
Indices: 49224271--49224420 Score: 214
Period size: 81 Copynumber: 1.9 Consensus size: 81
49224261 GGGTATAACA
* * ** *
49224271 GTCATTTTACTCTATGGGGGGTATTTCGATCATTTTACCTTATGGGGGTATTTTGGTTATTTTAC
1 GTCATTTTACCCTATGGGGGGTATTTCGATCATTTTACCCTATAAGGGTATTTTGGTCATTTT-C
49224336 CCTATAGGGTTATTTCG
65 CCTATAGGGTTATTTCG
*
49224353 GTCATTTTACCCTAT-GTGGGTATTTC-AGTCATTTTACCCTATAAGGGTATTTTGGTCATTTTC
1 GTCATTTTACCCTATGGGGGGTATTTCGA-TCATTTTACCCTATAAGGGTATTTTGGTCATTTTC
49224416 CCTAT
65 CCTAT
49224421 TTTAAGGTCT
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
80 7 0.11
81 40 0.66
82 14 0.23
ACGTcount: A:0.18, C:0.16, G:0.20, T:0.46
Consensus pattern (81 bp):
GTCATTTTACCCTATGGGGGGTATTTCGATCATTTTACCCTATAAGGGTATTTTGGTCATTTTCC
CTATAGGGTTATTTCG
Found at i:49227926 original size:81 final size:80
Alignment explanation
Indices: 49227804--49227952 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 80
49227794 GGGTATAACA
* ** *
49227804 GTCATTTTACTCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTTGGTTATTTTACC
1 GTCATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATAAGGGTATTTTGGTCATTTT-CC
49227869 CTATAGGGTTATTTCG
65 CTATAGGGTTATTTCG
* *
49227885 GTCATTTTACCCTATGTGGGTATTTCGGTCATTTTACCCTATAAGGGTATTTTGGTCATTTTCCC
1 GTCATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATAAGGGTATTTTGGTCATTTTCCC
49227950 TAT
66 TAT
49227953 TTTAAGGTCT
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
80 6 0.10
81 56 0.90
ACGTcount: A:0.17, C:0.17, G:0.20, T:0.46
Consensus pattern (80 bp):
GTCATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATAAGGGTATTTTGGTCATTTTCCC
TATAGGGTTATTTCG
Found at i:49227932 original size:27 final size:27
Alignment explanation
Indices: 49227804--49227952 Score: 194
Period size: 27 Copynumber: 5.6 Consensus size: 27
49227794 GGGTATAACA
* *
49227804 GTCATTTTACTCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* * *
49227831 ATCATTTTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTCG
*
49227858 GTTATTTTACCCTAT-AGGGTTATTTCG
1 GTCATTTTACCCTATGAGGG-TATTTCG
*
49227885 GTCATTTTACCCTATGTGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* *
49227912 GTCATTTTACCCTATAAGGGTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTCG
49227939 GTCATTTT-CCCTAT
1 GTCATTTTACCCTAT
49227953 TTTAAGGTCT
Statistics
Matches: 108, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
26 9 0.08
27 96 0.89
28 3 0.03
ACGTcount: A:0.17, C:0.17, G:0.20, T:0.46
Consensus pattern (27 bp):
GTCATTTTACCCTATGAGGGTATTTCG
Found at i:49236454 original size:24 final size:24
Alignment explanation
Indices: 49236406--49236452 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
49236396 ATTGGTCATA
*
49236406 GAGAGAATTGAGGAGGGATATTTG
1 GAGAGAATTGAGGAGGAATATTTG
*
49236430 GAGAGATTTGAGGAGAGAATATT
1 GAGAGAATTGAGGAG-GAATATT
49236453 GGGATTTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.36, C:0.00, G:0.38, T:0.26
Consensus pattern (24 bp):
GAGAGAATTGAGGAGGAATATTTG
Found at i:49237749 original size:80 final size:81
Alignment explanation
Indices: 49237615--49237788 Score: 271
Period size: 80 Copynumber: 2.2 Consensus size: 81
49237605 GCCCCTATTA
* *
49237615 GGTAAAATGATCGAAATACGCCTATAGGGTAAAATGACCAAAATACCCCCATAGGATAAAATGAT
1 GGTAAAATGATTGAAATACGCCTATAGGGTAAAATGACCAAAATACCCCCATAGGATAAAATGAC
49237680 TGAAATACCCCCATAG
66 TGAAATACCCCCATAG
* * * *
49237696 GGTAAAATGATTGAGATA--CCTCATAGGGTAAAATGACCTAAATACCCCTATAGGGTAAAATGA
1 GGTAAAATGATTGAAATACGCCT-ATAGGGTAAAATGACCAAAATACCCCCATAGGATAAAATGA
49237759 CTGAAATACCCCCATAG
65 CTGAAATACCCCCATAG
49237776 GGTAAAATGATTG
1 GGTAAAATGATTG
49237789 TTATACCCCT
Statistics
Matches: 86, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
79 3 0.03
80 67 0.78
81 16 0.19
ACGTcount: A:0.41, C:0.18, G:0.19, T:0.22
Consensus pattern (81 bp):
GGTAAAATGATTGAAATACGCCTATAGGGTAAAATGACCAAAATACCCCCATAGGATAAAATGAC
TGAAATACCCCCATAG
Found at i:49237794 original size:27 final size:27
Alignment explanation
Indices: 49237615--49237797 Score: 217
Period size: 27 Copynumber: 6.8 Consensus size: 27
49237605 GCCCCTATTA
* * *
49237615 GGTAAAATGATCGAAATACGCCTATAG
1 GGTAAAATGATTGAAATACCCCCATAG
***
49237642 GGTAAAATGACCAAAATACCCCCATAG
1 GGTAAAATGATTGAAATACCCCCATAG
*
49237669 GATAAAATGATTGAAATACCCCCATAG
1 GGTAAAATGATTGAAATACCCCCATAG
* *
49237696 GGTAAAATGATTGAGATA-CCTCATAG
1 GGTAAAATGATTGAAATACCCCCATAG
* *
49237722 GGTAAAATGACCT-AAATACCCCTATAG
1 GGTAAAATGA-TTGAAATACCCCCATAG
*
49237749 GGTAAAATGACTGAAATACCCCCATAG
1 GGTAAAATGATTGAAATACCCCCATAG
**
49237776 GGTAAAATGATTGTTATACCCC
1 GGTAAAATGATTGAAATACCCC
49237798 TAGGAGATGA
Statistics
Matches: 134, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
26 23 0.17
27 111 0.83
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.22
Consensus pattern (27 bp):
GGTAAAATGATTGAAATACCCCCATAG
Found at i:49243212 original size:57 final size:57
Alignment explanation
Indices: 49243150--49243258 Score: 200
Period size: 57 Copynumber: 1.9 Consensus size: 57
49243140 TACCTAACAA
49243150 TAGCATATTTAAATCATAAAACCATATAAAAACCAAATTTAAACCAAAATCCTACAC
1 TAGCATATTTAAATCATAAAACCATATAAAAACCAAATTTAAACCAAAATCCTACAC
* *
49243207 TAGCATATTTAAATCATAAAACCGTATAAAAACCAAATTTAAGCCAAAATCC
1 TAGCATATTTAAATCATAAAACCATATAAAAACCAAATTTAAACCAAAATCC
49243259 GTAAAGGCTA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 50 1.00
ACGTcount: A:0.51, C:0.20, G:0.04, T:0.25
Consensus pattern (57 bp):
TAGCATATTTAAATCATAAAACCATATAAAAACCAAATTTAAACCAAAATCCTACAC
Found at i:49244085 original size:17 final size:18
Alignment explanation
Indices: 49244053--49244088 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
49244043 CCATGATGTT
*
49244053 TGCCTGTGTGGGCCCACA
1 TGCCTATGTGGGCCCACA
49244071 TGCCTATGT-GGCCCACA
1 TGCCTATGTGGGCCCACA
49244088 T
1 T
49244089 TACCCAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.14, C:0.33, G:0.28, T:0.25
Consensus pattern (18 bp):
TGCCTATGTGGGCCCACA
Found at i:49247333 original size:26 final size:26
Alignment explanation
Indices: 49247310--49247409 Score: 112
Period size: 26 Copynumber: 3.9 Consensus size: 26
49247300 CCAATATCTA
* *
49247310 AGCAAAGTTGCCAGTAATAGTATCGT
1 AGCAAAGCTGCCAGTAACAGTATCGT
* *
49247336 AGCAAAGCTGCCAGTAACAGTATTGC
1 AGCAAAGCTGCCAGTAACAGTATCGT
* * **
49247362 AGCAAAACTGTCAGTAACAGTATCAC
1 AGCAAAGCTGCCAGTAACAGTATCGT
*
49247388 AGCAAA-CTGCTAGTAACAGTAT
1 AGCAAAGCTGCCAGTAACAGTAT
49247410 GCTTCCTCCA
Statistics
Matches: 64, Mismatches: 10, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
25 14 0.22
26 50 0.78
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (26 bp):
AGCAAAGCTGCCAGTAACAGTATCGT
Found at i:49247593 original size:27 final size:27
Alignment explanation
Indices: 49247576--49247733 Score: 210
Period size: 27 Copynumber: 5.9 Consensus size: 27
49247566 GTATAATAGC
49247576 CATTTTACCCTATGGGGGTATTTC-GAT
1 CATTTTACCCTATGGGGGTATTTCAG-T
* *
49247603 CATTTTACCTTATGAGGGTATTTCAGT
1 CATTTTACCCTATGGGGGTATTTCAGT
* * *
49247630 CATTTTATCCTATGAGGGTATTTCTGT
1 CATTTTACCCTATGGGGGTATTTCAGT
* * **
49247657 CATTTTTCCCTATGAGGGTATTTTGGT
1 CATTTTACCCTATGGGGGTATTTCAGT
*
49247684 CATTTTACCCTATGGGAGTATTTCAGT
1 CATTTTACCCTATGGGGGTATTTCAGT
49247711 CATTTTACCCTATGGGGGTATTT
1 CATTTTACCCTATGGGGGTATTT
49247734 TGATCATTTA
Statistics
Matches: 115, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
27 114 0.99
28 1 0.01
ACGTcount: A:0.19, C:0.16, G:0.20, T:0.44
Consensus pattern (27 bp):
CATTTTACCCTATGGGGGTATTTCAGT
Found at i:49247661 original size:81 final size:81
Alignment explanation
Indices: 49247576--49247742 Score: 239
Period size: 81 Copynumber: 2.1 Consensus size: 81
49247566 GTATAATAGC
* * *
49247576 CATTTTACCCTATGGGGGTATTTCGATCATTTTACCTTATGAGG-GTATTTCAGTCATTTTATCC
1 CATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATG-GGAGTATTTCAGTCATTTTACCC
49247640 TATGAGGGTATTTCTG-T
65 TATGAGGGTATTT-TGAT
* * *
49247657 CATTTTTCCCTATGAGGGTATTTTGGTCATTTTACCCTATGGGAGTATTTCAGTCATTTTACCCT
1 CATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGGGAGTATTTCAGTCATTTTACCCT
*
49247722 ATGGGGGTATTTTGAT
66 ATGAGGGTATTTTGAT
49247738 CATTT
1 CATTT
49247743 ATTGACCTCT
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
80 4 0.05
81 73 0.95
ACGTcount: A:0.19, C:0.16, G:0.20, T:0.45
Consensus pattern (81 bp):
CATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGGGAGTATTTCAGTCATTTTACCCT
ATGAGGGTATTTTGAT
Found at i:49250464 original size:31 final size:32
Alignment explanation
Indices: 49250418--49250489 Score: 128
Period size: 31 Copynumber: 2.3 Consensus size: 32
49250408 AGCTGAGCTG
*
49250418 AAATAATCACAGGAAAAGTAGAGGTGTCACCT
1 AAATAAACACAGGAAAAGTAGAGGTGTCACCT
49250450 AAATAAACA-AGGAAAAGTAGAGGTGTCACCT
1 AAATAAACACAGGAAAAGTAGAGGTGTCACCT
49250481 AAATAAACA
1 AAATAAACA
49250490 TACTTTAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
31 31 0.79
32 8 0.21
ACGTcount: A:0.50, C:0.14, G:0.19, T:0.17
Consensus pattern (32 bp):
AAATAAACACAGGAAAAGTAGAGGTGTCACCT
Found at i:49255731 original size:50 final size:50
Alignment explanation
Indices: 49255552--49255793 Score: 161
Period size: 50 Copynumber: 4.7 Consensus size: 50
49255542 GGGGATGAGA
* * **
49255552 TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATTATTGAGGTTATGAGAGA-
1 TCCCATGTAAGACCATATCTGGGACATGGCATTGGC---ACCGA---TATGAGA-AC
* * * * * **
49255608 TCCCATGTAAGACCATGTCTGAGACATGACGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATATCTGGGACATGGCATTGGCACCGATATGAGAAC
* * * *
49255658 TCCCCCT-TAAGACCATGTTTGGGACATGGCATGGGCACCGATATGAGAAC
1 T-CCCATGTAAGACCATATCTGGGACATGGCATTGGCACCGATATGAGAAC
* * * * *
49255708 TCCCATGTAAGACCATATCTGGGATACGGTATTGGCA--GTACAGGA-AAC
1 TCCCATGTAAGACCATATCTGGGACATGGCATTGGCACCG-ATATGAGAAC
* *
49255756 ATCCCATGTAAGACCATATCTGGTACATGGCTTTGGCA
1 -TCCCATGTAAGACCATATCTGGGACATGGCATTGGCA
49255794 TGTTATTATC
Statistics
Matches: 150, Mismatches: 31, Indels: 17
0.76 0.16 0.09
Matches are distributed among these distances:
48 4 0.03
49 40 0.27
50 67 0.45
51 4 0.03
53 3 0.02
56 32 0.21
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGACCATATCTGGGACATGGCATTGGCACCGATATGAGAAC
Found at i:49256661 original size:118 final size:118
Alignment explanation
Indices: 49256453--49256688 Score: 359
Period size: 118 Copynumber: 2.0 Consensus size: 118
49256443 TGAATGAGAT
*
49256453 ATAGAATTAAAGCTTATCAAGTCTATTTTCACATGAATGAAACGATGTAGACAAAGAAATCATAT
1 ATAGAATTAAAGCTTATCAAGTCTATTTTCACATGAAAGAAACGATGTAGACAAAGAAATCATAT
* * *
49256518 ATTCTGAGATATTTGAATTTTAGTGAGACATA-GTCAAAATGGTTTTTGAAGTC
66 ATTATAAGATATTTGAATTTTAGTGAGACA-AGGTCAAAATGGCTTTTGAAGTC
* * * *
49256571 ATAGAATTAAAGCTTAT-AGAGTCTATTTTCACATGAAAGAAACGGTGTAGGCAAAGGAATTATA
1 ATAGAATTAAAGCTTATCA-AGTCTATTTTCACATGAAAGAAACGATGTAGACAAAGAAATCATA
*
49256635 TATTATAAGATATTTGAATTTTAGTGAGACAAGGTCAGAATGGCTTTTGAAGTC
65 TATTATAAGATATTTGAATTTTAGTGAGACAAGGTCAAAATGGCTTTTGAAGTC
49256689 CCCTGTTCTG
Statistics
Matches: 107, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
117 2 0.02
118 105 0.98
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (118 bp):
ATAGAATTAAAGCTTATCAAGTCTATTTTCACATGAAAGAAACGATGTAGACAAAGAAATCATAT
ATTATAAGATATTTGAATTTTAGTGAGACAAGGTCAAAATGGCTTTTGAAGTC
Found at i:49273488 original size:224 final size:224
Alignment explanation
Indices: 49273093--49273541 Score: 835
Period size: 224 Copynumber: 2.0 Consensus size: 224
49273083 CGATGACCCA
*
49273093 TACAGAATCCTCCTTGGTAGCTGTGAGGGGTAACCCATTAACAAAATCCATAGTCACTCTCTCCC
1 TACAAAATCCTCCTTGGTAGCTGTGAGGGGTAACCCATTAACAAAATCCATAGTCACTCTCTCCC
*
49273158 ACTTCCAAAGTGGAATCTTGACTGGCTGTAACAATCCCGAAGGTAACTGATGCTCAGCCTTAACC
66 ACTTCCAAAGCGGAATCTTGACTGGCTGTAACAATCCCGAAGGTAACTGATGCTCAGCCTTAACC
*
49273223 TGTTGGCATCTCAAACACCTGGCCACAAATTTAGTAACCTCCCATTTAAGACCTGGCCACCAGTG
131 TGTTGGCATCTCAAACACCTGGCCACAAATTCAGTAACCTCCCATTTAAGACCTGGCCACCAGTG
*
49273288 TAACTCATGAAGGTCTCGGTACATCTTGT
196 TAACTCACGAAGGTCTCGGTACATCTTGT
49273317 TACAAAATCCTCCTTGGTAGCTGTGAGGGGTAACCCATTAACAAAATCCATAGTCACTCTCTCCC
1 TACAAAATCCTCCTTGGTAGCTGTGAGGGGTAACCCATTAACAAAATCCATAGTCACTCTCTCCC
*
49273382 ACTTCCAAAGCGGAATCTTGACTGGCTGTAACAATCCTGAAGGTAACTGATGCTCAGCCTTAACC
66 ACTTCCAAAGCGGAATCTTGACTGGCTGTAACAATCCCGAAGGTAACTGATGCTCAGCCTTAACC
* *
49273447 TGTTGGCATGTCAAACACTTGGCCACAAATTCAGTAACCTCCCATTTAAGACCTGGCCACCAGTG
131 TGTTGGCATCTCAAACACCTGGCCACAAATTCAGTAACCTCCCATTTAAGACCTGGCCACCAGTG
49273512 TAACTCACGAAGGTCTCGGTACATCTTGT
196 TAACTCACGAAGGTCTCGGTACATCTTGT
49273541 T
1 T
49273542 TCTGCCAGGA
Statistics
Matches: 218, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
224 218 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (224 bp):
TACAAAATCCTCCTTGGTAGCTGTGAGGGGTAACCCATTAACAAAATCCATAGTCACTCTCTCCC
ACTTCCAAAGCGGAATCTTGACTGGCTGTAACAATCCCGAAGGTAACTGATGCTCAGCCTTAACC
TGTTGGCATCTCAAACACCTGGCCACAAATTCAGTAACCTCCCATTTAAGACCTGGCCACCAGTG
TAACTCACGAAGGTCTCGGTACATCTTGT
Found at i:49281829 original size:46 final size:46
Alignment explanation
Indices: 49281776--49282001 Score: 195
Period size: 46 Copynumber: 4.9 Consensus size: 46
49281766 AGTTCTTACC
* *
49281776 CAGGTTCCCAGCTCCTACATATGTTGCAGAATGGAGAA-ATCAAATT
1 CAGGTTCCCAGCTCCTGCATATGTTGCAGACTGGAGAATAT-AAATT
* * ** * *
49281822 CAGGTTCCCAGTTCCTGTATATGTTGTGGACTTGAGAATATAGATT
1 CAGGTTCCCAGCTCCTGCATATGTTGCAGACTGGAGAATATAAATT
* * * * * **
49281868 CAAGTTCCCAGCTCCTGGATATCTTGCAGACTAGATAATATAGGTT
1 CAGGTTCCCAGCTCCTGCATATGTTGCAGACTGGAGAATATAAATT
* * * *
49281914 TAGGTTCCCAACTCCTGCATATGTTGCGGATTGGAGAATA-AAAGTT
1 CAGGTTCCCAGCTCCTGCATATGTTGCAGACTGGAGAATATAAA-TT
* * * * * *
49281960 TAGGTTCCCAGCTCTTGCAAATGTTGTAGGCTGGGGAATATA
1 CAGGTTCCCAGCTCCTGCATATGTTGCAGACTGGAGAATATA
49282002 GTAATAATAA
Statistics
Matches: 141, Mismatches: 36, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
45 1 0.01
46 137 0.97
47 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (46 bp):
CAGGTTCCCAGCTCCTGCATATGTTGCAGACTGGAGAATATAAATT
Found at i:49285422 original size:16 final size:16
Alignment explanation
Indices: 49285401--49285433 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
49285391 GAGATAGTCT
49285401 ACGGGAAGCCCACATC
1 ACGGGAAGCCCACATC
49285417 ACGGGAAGCCCACATC
1 ACGGGAAGCCCACATC
49285433 A
1 A
49285434 GCATTTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.36, G:0.24, T:0.06
Consensus pattern (16 bp):
ACGGGAAGCCCACATC
Found at i:49293175 original size:18 final size:17
Alignment explanation
Indices: 49293151--49293197 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 17
49293141 ACCGGTCACC
49293151 TTAAAAAAATATTAATT
1 TTAAAAAAATATTAATT
*
49293168 TGTAAAAATATA-TAATT
1 T-TAAAAAAATATTAATT
*
49293185 TTAAAAAAGTATT
1 TTAAAAAAATATT
49293198 TTGTTTATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
16 8 0.32
17 8 0.32
18 9 0.36
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.40
Consensus pattern (17 bp):
TTAAAAAAATATTAATT
Done.