Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 16 of 240
Found at i:6021935 original size:132 final size:132
Alignment explanation
Indices: 6021698--6021955 Score: 349
Period size: 132 Copynumber: 2.0 Consensus size: 132
6021688 CTTTCCCACC
* * * *
6021698 GATTCGGATTTCACCTTGCTCGAATCATAATAGTGTACACCAGGCACAGTTTTTTCAGATTGCAA
1 GATTCAGATTTCACCTTACTCGAATCATAATAGTGTACACCAGGCACAGGTTTTTCAGATTCCAA
* * * *
6021763 TGAACGAAAGGAGTTAGAACTCTTATGATCATCAATGGGATG-TTTGAAGGAAGATTTGCTTCTC
66 CGAACGAAAGGAATCAGAACTCTTATGATCATCAATGGGATGCTTTG-AGGAAGACTTGCTTCTC
6021827 ACT
130 ACT
* * *
6021830 GATTCAGATTTTACCTTACTCGAATCATAATAGTGTGCACCAGGCACAGGTTTTTCATATTCCAA
1 GATTCAGATTTCACCTTACTCGAATCATAATAGTGTACACCAGGCACAGGTTTTTCAGATTCCAA
* * * *
6021895 CGAA-GCAATGGAATCAGAAGTTTTATGATCATCGATGGGATGCTTTGAGGAAGACTTGCTT
66 CGAACG-AAAGGAATCAGAACTCTTATGATCATCAATGGGATGCTTTGAGGAAGACTTGCTT
6021956 GCAGTTGTCA
Statistics
Matches: 109, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
131 1 0.01
132 104 0.95
133 4 0.04
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.32
Consensus pattern (132 bp):
GATTCAGATTTCACCTTACTCGAATCATAATAGTGTACACCAGGCACAGGTTTTTCAGATTCCAA
CGAACGAAAGGAATCAGAACTCTTATGATCATCAATGGGATGCTTTGAGGAAGACTTGCTTCTCA
CT
Found at i:6022104 original size:150 final size:150
Alignment explanation
Indices: 6021830--6022165 Score: 399
Period size: 150 Copynumber: 2.2 Consensus size: 150
6021820 GCTTCTCACT
* * *
6021830 GATTCAGATTTTACCTTACTCGAATCATAATAGTGTGCACCAGGCACAGGTTTTTCATATTCCAA
1 GATTCAGATTTTACCTTACTAGAATCATAATAGTGTACACCAGACACAGGTTTTTCATATTCCAA
* * *
6021895 CGAAGCAATGGAATCAGAAGTTTTATGATCATCGATGGGATGCTTTGAGGAAGACTTGCTTG-CA
66 CGAAGCAATGGAATCAGAACTCTTATGATCATCAATGGGATGCTTTGAGGAAGACTTGCTTGCCA
* * *
6021959 GTTGTCAGAATCTTTCCCACC
131 -CTGCCAAAATCTTTCCCACC
* * *
6021980 GATTCGGATTTTACCTTACTAGAATCATAATAGTGTACACCAGATACA-GTTTGTTCGTATTCCA
1 GATTCAGATTTTACCTTACTAGAATCATAATAGTGTACACCAGACACAGGTTT-TTCATATTCCA
* * ** * *
6022044 ATGAAGCAGTGGAATTGGAACTCTTATGGTCATCAATGGGATG-TTTGAAGGAAGATTTGCTTGC
65 ACGAAGCAATGGAATCAGAACTCTTATGATCATCAATGGGATGCTTTG-AGGAAGACTTGCTTGC
**
6022108 CACTGCCAAAATCTTTCCCGTC
129 CACTGCCAAAATCTTTCCCACC
* * * * *
6022130 AATTCAGATTTCATCTTGCTTGAATCATAATAGTGT
1 GATTCAGATTTTACCTTACTAGAATCATAATAGTGT
6022166 TTTGCCATAT
Statistics
Matches: 157, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
149 8 0.05
150 147 0.94
151 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (150 bp):
GATTCAGATTTTACCTTACTAGAATCATAATAGTGTACACCAGACACAGGTTTTTCATATTCCAA
CGAAGCAATGGAATCAGAACTCTTATGATCATCAATGGGATGCTTTGAGGAAGACTTGCTTGCCA
CTGCCAAAATCTTTCCCACC
Found at i:6028459 original size:44 final size:45
Alignment explanation
Indices: 6028392--6028499 Score: 137
Period size: 44 Copynumber: 2.4 Consensus size: 45
6028382 TGTCTTTAAC
** * * *
6028392 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATA-TATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTATAAT
* *
6028436 ATGGACTTATATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA-TTATAAT
6028482 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
6028500 TTTCTGTTCT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
44 32 0.59
46 22 0.41
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (45 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTATAAT
Found at i:6028921 original size:9 final size:9
Alignment explanation
Indices: 6028907--6028940 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
6028897 TTCTATTCTG
6028907 TTTCTTTTC
1 TTTCTTTTC
6028916 TTTCTTTT-
1 TTTCTTTTC
*
6028924 TTTCTATTC
1 TTTCTTTTC
6028933 TTTCTTTT
1 TTTCTTTT
6028941 GTTTTATGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTCTTTTC
Found at i:6028933 original size:17 final size:17
Alignment explanation
Indices: 6028907--6028940 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
6028897 TTCTATTCTG
*
6028907 TTTCTTTTCTTTCTTTT
1 TTTCTATTCTTTCTTTT
6028924 TTTCTATTCTTTCTTTT
1 TTTCTATTCTTTCTTTT
6028941 GTTTTATGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTCTATTCTTTCTTTT
Found at i:6028962 original size:5 final size:5
Alignment explanation
Indices: 6028949--6029018 Score: 63
Period size: 5 Copynumber: 13.6 Consensus size: 5
6028939 TTGTTTTATG
* *
6028949 TATATA TATAA TATAA TATAA TATAT TAATAA TATAA TATAA -A-AA CATAA
1 TATA-A TATAA TATAA TATAA TATAA T-ATAA TATAA TATAA TATAA TATAA
*
6028999 TCATTAC TATAA TATAA TAT
1 T-A-TAA TATAA TATAA TAT
6029019 TTTTTTAACA
Statistics
Matches: 54, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
3 2 0.04
4 2 0.04
5 37 0.69
6 10 0.19
7 3 0.06
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:6028999 original size:21 final size:21
Alignment explanation
Indices: 6028956--6029017 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 21
6028946 ATGTATATAT
* *
6028956 ATAATATAATATAATATATTA
1 ATAATATAATATAATAAAATA
6028977 ATAATATAATATAA-AAACATA
1 ATAATATAATATAATAAA-ATA
* * *
6028998 ATCAT-TACTATAATATAATA
1 ATAATATAATATAATAAAATA
6029018 TTTTTTTAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
20 12 0.35
21 22 0.65
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (21 bp):
ATAATATAATATAATAAAATA
Found at i:6032204 original size:33 final size:34
Alignment explanation
Indices: 6032147--6032211 Score: 107
Period size: 33 Copynumber: 1.9 Consensus size: 34
6032137 CAAACACCAG
6032147 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTAC-GAAAAGT
6032182 AAAATATTTT-CAG-AAATCATTTTACGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACGAAAA
6032212 ACATTTTACT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
32 5 0.17
33 12 0.40
34 3 0.10
35 10 0.33
ACGTcount: A:0.48, C:0.11, G:0.08, T:0.34
Consensus pattern (34 bp):
AAAATATTTTCCAGTAAATCATTTTACGAAAAGT
Found at i:6036056 original size:18 final size:18
Alignment explanation
Indices: 6036033--6036093 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
6036023 TTAAAATAAT
6036033 TAAAAATTAAAATATTTA
1 TAAAAATTAAAATATTTA
*
6036051 TAAAAATTCCAAAT-TTTA
1 TAAAAATT-AAAATATTTA
***
6036069 TATATTTTTAAAATA-TTA
1 TA-AAAATTAAAATATTTA
6036087 TAAAAAT
1 TAAAAAT
6036094 CTTAAAAAAT
Statistics
Matches: 32, Mismatches: 8, Indels: 7
0.68 0.17 0.15
Matches are distributed among these distances:
17 2 0.06
18 23 0.72
19 7 0.22
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (18 bp):
TAAAAATTAAAATATTTA
Found at i:6036100 original size:19 final size:19
Alignment explanation
Indices: 6036076--6036122 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
6036066 TTATATATTT
*
6036076 TTAAAATATTATAAAAATC
1 TTAAAAAATTATAAAAATC
* *
6036095 TTAAAAAATTCTAAAAATA
1 TTAAAAAATTATAAAAATC
6036114 TATAAAAAA
1 T-TAAAAAA
6036123 GTTAAATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (19 bp):
TTAAAAAATTATAAAAATC
Found at i:6036128 original size:19 final size:19
Alignment explanation
Indices: 6036087--6036128 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
6036077 TAAAATATTA
* *
6036087 TAAAAATCTTAAAAAATTC
1 TAAAAATATTAAAAAAGTC
6036106 TAAAAATATATAAAAAAGT-
1 TAAAAATAT-TAAAAAAGTC
6036125 TAAA
1 TAAA
6036129 TTTTAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.29
Consensus pattern (19 bp):
TAAAAATATTAAAAAAGTC
Found at i:6044866 original size:18 final size:18
Alignment explanation
Indices: 6044843--6044901 Score: 118
Period size: 18 Copynumber: 3.3 Consensus size: 18
6044833 CGAGATTGAC
6044843 AACTCATCCCTTAAAGTT
1 AACTCATCCCTTAAAGTT
6044861 AACTCATCCCTTAAAGTT
1 AACTCATCCCTTAAAGTT
6044879 AACTCATCCCTTAAAGTT
1 AACTCATCCCTTAAAGTT
6044897 AACTC
1 AACTC
6044902 GATTTCAAGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 41 1.00
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.32
Consensus pattern (18 bp):
AACTCATCCCTTAAAGTT
Found at i:6045329 original size:12 final size:12
Alignment explanation
Indices: 6045312--6045341 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
6045302 AAAAAATCCA
6045312 AATTTAATTTCC
1 AATTTAATTTCC
*
6045324 AATTTAATTTCT
1 AATTTAATTTCC
6045336 AATTTA
1 AATTTA
6045342 TTTAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (12 bp):
AATTTAATTTCC
Found at i:6046517 original size:33 final size:33
Alignment explanation
Indices: 6046479--6046543 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
6046469 TTAAAATATA
*
6046479 TATATT-ATATATTATGTTTACTTA-AATAATAAG
1 TATATTGATATATTAT-ATTA-TTATAATAATAAG
*
6046512 TATATTGTTATATTATATTATTATAATAATAA
1 TATATTGATATATTATATTATTATAATAATAA
6046544 AACAAGAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
32 3 0.11
33 17 0.61
34 8 0.29
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.51
Consensus pattern (33 bp):
TATATTGATATATTATATTATTATAATAATAAG
Found at i:6053219 original size:17 final size:18
Alignment explanation
Indices: 6053194--6053229 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
6053184 TCTCTCTCTC
6053194 TTTTCTAG-TTTTACTTT
1 TTTTCTAGTTTTTACTTT
*
6053211 TTTTTTAGTTTTTACTTT
1 TTTTCTAGTTTTTACTTT
6053229 T
1 T
6053230 AAAAGTTATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.11, C:0.08, G:0.06, T:0.75
Consensus pattern (18 bp):
TTTTCTAGTTTTTACTTT
Found at i:6053725 original size:21 final size:21
Alignment explanation
Indices: 6053699--6053740 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
6053689 CATATCCTCC
6053699 TCCTGAATTGAGATGCAACCT
1 TCCTGAATTGAGATGCAACCT
6053720 TCCTGAATTGAGATGCAACCT
1 TCCTGAATTGAGATGCAACCT
6053741 AATCTGCAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (21 bp):
TCCTGAATTGAGATGCAACCT
Found at i:6057351 original size:14 final size:14
Alignment explanation
Indices: 6057328--6057368 Score: 57
Period size: 13 Copynumber: 3.0 Consensus size: 14
6057318 GGTTATAATG
*
6057328 TTTAGATATTTTAT
1 TTTAAATATTTTAT
*
6057342 TTTAATTATTTTA-
1 TTTAAATATTTTAT
6057355 TTTAAATATTTTAT
1 TTTAAATATTTTAT
6057369 ATAAAAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (14 bp):
TTTAAATATTTTAT
Found at i:6057364 original size:13 final size:13
Alignment explanation
Indices: 6057328--6057373 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
6057318 GGTTATAATG
*
6057328 TTTAGATATTTTA
1 TTTAAATATTTTA
*
6057341 TTTTAATTATTTTA
1 -TTTAAATATTTTA
6057355 TTTAAATATTTTA
1 TTTAAATATTTTA
*
6057368 TATAAA
1 TTTAAA
6057374 AATAATAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
13 17 0.61
14 11 0.39
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (13 bp):
TTTAAATATTTTA
Found at i:6064473 original size:5 final size:6
Alignment explanation
Indices: 6064455--6064480 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
6064445 AAATTATTAA
6064455 TTATTT TTATTT TTATTT TTATTT TT
1 TTATTT TTATTT TTATTT TTATTT TT
6064481 TTATATTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTATTT
Found at i:6068329 original size:35 final size:35
Alignment explanation
Indices: 6068290--6068359 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
6068280 AGTGAATCAA
*
6068290 GTTGGTCTTCTTCAAGAGCTAACTCATACAAGTCT
1 GTTGGTCTTCTTCAAGAACTAACTCATACAAGTCT
6068325 GTTGGTCTTCTTCAAGAACTAACTCATACAAGTCT
1 GTTGGTCTTCTTCAAGAACTAACTCATACAAGTCT
6068360 ATTGAGATGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (35 bp):
GTTGGTCTTCTTCAAGAACTAACTCATACAAGTCT
Found at i:6068969 original size:136 final size:136
Alignment explanation
Indices: 6068725--6068999 Score: 505
Period size: 136 Copynumber: 2.0 Consensus size: 136
6068715 ACTCTTTCAC
*
6068725 TCTAGGTGTTGGAGATGGACTATGCTCTGAAACTTCAGCTAAATACTTATGCTCCACAAAACTCT
1 TCTAGATGTTGGAGATGGACTATGCTCTGAAACTTCAGCTAAATACTTATGCTCCACAAAACTCT
*
6068790 TTACATCAGAATTCTTAGATTCCCCATCATCTGACGCAACTTCTTGGGAGATGCTGCGTGCTAAT
66 TTACATCAGAATTCTTAGATTCCCCATCATCTGACGCAACTTCTTGGGAGATGCTGCATGCTAAT
6068855 TTTTCT
131 TTTTCT
**
6068861 TCTAGATGTTGGAGATGGACTATGCTCTGAAACTTCAGCTAAATACTTATGCTTTACAAAACTCT
1 TCTAGATGTTGGAGATGGACTATGCTCTGAAACTTCAGCTAAATACTTATGCTCCACAAAACTCT
*
6068926 TTACATCAGAATTCTTAGATTCCCCATCGTCTGACGCAACTTCTTGGGAGATGCTGCATGCTAAT
66 TTACATCAGAATTCTTAGATTCCCCATCATCTGACGCAACTTCTTGGGAGATGCTGCATGCTAAT
6068991 TTTTCT
131 TTTTCT
6068997 TCT
1 TCT
6069000 GTCTGGTTAT
Statistics
Matches: 134, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
136 134 1.00
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (136 bp):
TCTAGATGTTGGAGATGGACTATGCTCTGAAACTTCAGCTAAATACTTATGCTCCACAAAACTCT
TTACATCAGAATTCTTAGATTCCCCATCATCTGACGCAACTTCTTGGGAGATGCTGCATGCTAAT
TTTTCT
Found at i:6080474 original size:25 final size:25
Alignment explanation
Indices: 6080446--6080495 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
6080436 CAGGTAAGGC
*
6080446 TCCTTCTCCTTCTTCCGTTCTTCAT
1 TCCTTCTCCTTCTTCCATTCTTCAT
* *
6080471 TCCTTTTTCTTCTTCCATTCTTCAT
1 TCCTTCTCCTTCTTCCATTCTTCAT
6080496 CTTCTCTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.06, C:0.36, G:0.02, T:0.56
Consensus pattern (25 bp):
TCCTTCTCCTTCTTCCATTCTTCAT
Found at i:6083424 original size:21 final size:21
Alignment explanation
Indices: 6083400--6083452 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
6083390 CGCTGTTTCT
* *
6083400 AATCTCACTGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
*
6083421 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
6083442 AATCTCACCGC
1 AATCTCACCGC
6083453 CACTGCTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.30, C:0.36, G:0.09, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:6088742 original size:96 final size:96
Alignment explanation
Indices: 6088578--6088771 Score: 280
Period size: 96 Copynumber: 2.0 Consensus size: 96
6088568 GGGATGTTGC
* * * * * *
6088578 TGCTGTGTAGGAGGCATTGGGAAGTGTTGACTTGGAGCCTCCTGAGTTTGGCCAGGCGGTGGATA
1 TGCTGAGTAGGAGGCATCGAGAAGTGCTGACTTGGAACCTCCTGAGTTTGGCCAGGCGGAGGATA
6088643 GTAAGCATCTCGCTGAGGGACAGAAGGAACT
66 GTAAGCATCTCGCTGAGGGACAGAAGGAACT
* * * * *
6088674 TGCTGAGTAGGAGGCATCGAGAATTGCTGACTTGGAATCTCCTGAGTTTGGGCAGGGGGAGTATA
1 TGCTGAGTAGGAGGCATCGAGAAGTGCTGACTTGGAACCTCCTGAGTTTGGCCAGGCGGAGGATA
*
6088739 GTAAGCATCTCGTTGAGGGACAGAAGGAACT
66 GTAAGCATCTCGCTGAGGGACAGAAGGAACT
6088770 TG
1 TG
6088772 GCTCTGAGGG
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
96 86 1.00
ACGTcount: A:0.24, C:0.15, G:0.37, T:0.24
Consensus pattern (96 bp):
TGCTGAGTAGGAGGCATCGAGAAGTGCTGACTTGGAACCTCCTGAGTTTGGCCAGGCGGAGGATA
GTAAGCATCTCGCTGAGGGACAGAAGGAACT
Found at i:6092769 original size:17 final size:16
Alignment explanation
Indices: 6092743--6092783 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
6092733 AGAAATAAGA
6092743 TTTT-TATTTTTTACT
1 TTTTCTATTTTTTACT
*
6092758 TTTTGCTATTTTTTAGT
1 TTTT-CTATTTTTTACT
6092775 TTTTCTATT
1 TTTTCTATT
6092784 CTATCACTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 4 0.17
16 5 0.22
17 14 0.61
ACGTcount: A:0.12, C:0.07, G:0.05, T:0.76
Consensus pattern (16 bp):
TTTTCTATTTTTTACT
Found at i:6095495 original size:24 final size:24
Alignment explanation
Indices: 6095468--6095519 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
6095458 TTAGTAAGTC
*
6095468 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
6095492 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
6095516 AAAT
1 AAAT
6095520 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:6097465 original size:24 final size:24
Alignment explanation
Indices: 6097438--6097489 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
6097428 TTAGTAAGTC
*
6097438 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
6097462 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
6097486 AAAT
1 AAAT
6097490 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:6097673 original size:25 final size:26
Alignment explanation
Indices: 6097643--6097696 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 26
6097633 CAAAAATTTT
** *
6097643 AATTTTTTAACCATTAATTGAAC-TA
1 AATTTTTTAAAAATTAACTGAACTTA
6097668 AATTTTTTAAAAATTAACTGAACTTA
1 AATTTTTTAAAAATTAACTGAACTTA
6097694 AAT
1 AAT
6097697 ATTTCGATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.44, C:0.09, G:0.04, T:0.43
Consensus pattern (26 bp):
AATTTTTTAAAAATTAACTGAACTTA
Found at i:6100695 original size:58 final size:58
Alignment explanation
Indices: 6100630--6100747 Score: 236
Period size: 58 Copynumber: 2.0 Consensus size: 58
6100620 GATCATAATA
6100630 AATTACATAAATAAATAAGCAAATGTCTGTCTCTTTCGGCGTACCTATTTTAGTTTTG
1 AATTACATAAATAAATAAGCAAATGTCTGTCTCTTTCGGCGTACCTATTTTAGTTTTG
6100688 AATTACATAAATAAATAAGCAAATGTCTGTCTCTTTCGGCGTACCTATTTTAGTTTTG
1 AATTACATAAATAAATAAGCAAATGTCTGTCTCTTTCGGCGTACCTATTTTAGTTTTG
6100746 AA
1 AA
6100748 ACAAGGGTAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (58 bp):
AATTACATAAATAAATAAGCAAATGTCTGTCTCTTTCGGCGTACCTATTTTAGTTTTG
Found at i:6102239 original size:30 final size:29
Alignment explanation
Indices: 6102205--6102289 Score: 82
Period size: 29 Copynumber: 2.9 Consensus size: 29
6102195 TTATATGAAG
6102205 TAAAAAATTAAAATAATTATCAAATATATT
1 TAAAAAATT-AAATAATTATCAAATATATT
* * **
6102235 TAAAATATTAAAT-GTTAAAAAAATATATT
1 TAAAAAATTAAATAATT-ATCAAATATATT
* *
6102264 TAAAAACTTTAATAATTTATCAAATA
1 TAAAAAATTAAATAA-TTATCAAATA
6102290 CACCTAAATG
Statistics
Matches: 42, Mismatches: 10, Indels: 6
0.72 0.17 0.10
Matches are distributed among these distances:
28 2 0.05
29 24 0.57
30 14 0.33
31 2 0.05
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.38
Consensus pattern (29 bp):
TAAAAAATTAAATAATTATCAAATATATT
Found at i:6102311 original size:39 final size:39
Alignment explanation
Indices: 6102268--6102345 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
6102258 TATATTTAAA
6102268 AACTTTAATAATTTATCAAATACACCTAAATGTGACAGT
1 AACTTTAATAATTTATCAAATACACCTAAATGTGACAGT
6102307 AACTTTAATAATTTATCAAATACACCTAAATGTGACAGT
1 AACTTTAATAATTTATCAAATACACCTAAATGTGACAGT
6102346 CTTCACTTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.44, C:0.15, G:0.08, T:0.33
Consensus pattern (39 bp):
AACTTTAATAATTTATCAAATACACCTAAATGTGACAGT
Found at i:6104370 original size:11 final size:11
Alignment explanation
Indices: 6104349--6104387 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
6104339 TATTCTGTTA
6104349 TTATTTCGTTG
1 TTATTTCGTTG
6104360 TTGATTT-GTTG
1 TT-ATTTCGTTG
6104371 TTATTTCGTTG
1 TTATTTCGTTG
*
6104382 CTATTT
1 TTATTT
6104388 TGCTGTGATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
10 4 0.16
11 17 0.68
12 4 0.16
ACGTcount: A:0.10, C:0.08, G:0.18, T:0.64
Consensus pattern (11 bp):
TTATTTCGTTG
Found at i:6104389 original size:22 final size:22
Alignment explanation
Indices: 6104339--6104399 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
6104329 TTAAATCTTT
* * *
6104339 TATTCTGTTATTATTTCGTTGT
1 TATTTTGTTGTTATTTCGTTGC
6104361 TGA-TTTGTTGTTATTTCGTTGC
1 T-ATTTTGTTGTTATTTCGTTGC
* *
6104383 TATTTTGCTGTGATTTC
1 TATTTTGTTGTTATTTC
6104400 ATTACTATAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
21 1 0.03
22 30 0.94
23 1 0.03
ACGTcount: A:0.11, C:0.10, G:0.18, T:0.61
Consensus pattern (22 bp):
TATTTTGTTGTTATTTCGTTGC
Found at i:6104407 original size:22 final size:22
Alignment explanation
Indices: 6104364--6104407 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
6104354 TCGTTGTTGA
* * * *
6104364 TTTGTTGTTATTTCGTTGCTAT
1 TTTGCTGTGATTTCATTACTAT
6104386 TTTGCTGTGATTTCATTACTAT
1 TTTGCTGTGATTTCATTACTAT
6104408 AAAGTTACTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.14, C:0.11, G:0.16, T:0.59
Consensus pattern (22 bp):
TTTGCTGTGATTTCATTACTAT
Found at i:6105805 original size:29 final size:30
Alignment explanation
Indices: 6105742--6105805 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 30
6105732 TTACAATTTG
*
6105742 GTCACTAAACTATTCAAATGGTTTCATTTAA
1 GTCACTAAACTATTCAAA-GATTTCATTTAA
*
6105773 GTCACTGAACTATTCAAA-ATTTCATTTAA
1 GTCACTAAACTATTCAAAGATTTCATTTAA
6105802 GTCA
1 GTCA
6105806 TTGGGCTATG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 14 0.45
31 17 0.55
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (30 bp):
GTCACTAAACTATTCAAAGATTTCATTTAA
Found at i:6114294 original size:30 final size:30
Alignment explanation
Indices: 6114260--6114320 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
6114250 ACATTATAAG
6114260 AAGAACCATAAGTTTCTTCATGTGATTGTT
1 AAGAACCATAAGTTTCTTCATGTGATTGTT
6114290 AAGAACCATAAGTTTCTTCATGTGATTGTT
1 AAGAACCATAAGTTTCTTCATGTGATTGTT
6114320 A
1 A
6114321 CAAAATATAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.39
Consensus pattern (30 bp):
AAGAACCATAAGTTTCTTCATGTGATTGTT
Found at i:6126012 original size:335 final size:341
Alignment explanation
Indices: 6125393--6126048 Score: 920
Period size: 335 Copynumber: 1.9 Consensus size: 341
6125383 GATTTTCTTG
** * * * *
6125393 TACTAATTCATTATTTGTTAGGTTAAGTTGAGCTCCCTTAATTAAGCAAACCAAAGCTTTTTTTT
1 TACTAATTCATTATTTGTTAGGTTAAACTGACCGCCATTAATGAAGCAAACCAAAGCTTTTTTTT
* * *
6125458 TTAAAGTTGTTAGACTAAAAATTGGGTTGAGTTAATAAAGTAGGTATTTTTTATTTTCAAGCAAT
66 TTAAAGTAGTTAGACTAAAAATTGGGTTGACTTAATAAAGCAGGTATTTTTTATTTTCAAGCAAT
* * *
6125523 TAAATTGGTAATTTTTCAAATTTTGGGTTGTTTTATTTCTTTCTTTCTTTTTTTTACTTAATTAA
131 TAAATTGGTAATTTTTCAAATTTTGGGTTGTTTTA--T-TTTCTTTCGTTTTTTTACTGAATCAA
6125588 ACACATGGATAACGTCAGAAAATGTTACAACGAAAAGTAAAACTGTAAAAGATAAAATTACACAA
193 ACACATGGATAACGTCAGAAAATGTTACAACGAAAAGTAAAACTGTAAAAGATAAAATTACACAA
* *
6125653 TGTGTAAACATTGAGAGCTCAATTTTTAGAATCAAAACTAAATTGACACAATGTATAAATGACAA
258 TATGTAAACATTGAGAGCTCAATTTTTAGAATCAAAACTAAATTGACACAATGTACAAATGACAA
6125718 ATTTAATAGCTCTGAGTGA
323 ATTTAATAGCTCTGAGTGA
* * *
6125737 TACTAATTCATTGTTTGTTAGGTTAAACTGACCGCCATTGAA-GAAGTAAATCAAAGCTTCTTCT
1 TACTAATTCATTATTTGTTAGGTTAAACTGACCGCCATT-AATGAAGCAAACCAAAGCTT-TT-T
* * *
6125801 TTTTT-AAGTAGTTAGACTTACAATTGGGTTGACTTAATGAAGCA-G-A-TTTTT-TTTTCAAGC
63 TTTTTAAAGTAGTTAGACTAAAAATTGGGTTGACTTAATAAAGCAGGTATTTTTTATTTTCAAGC
*
6125861 AATTAAATT-GTCTATTTTTCAAATTTTGGGTTGTTTTA-TTTC-TT-GTTTTTTTACTGAATCA
128 AATTAAATTGGT-AATTTTTCAAATTTTGGGTTGTTTTATTTTCTTTCGTTTTTTTACTGAATCA
* *
6125922 AACACATGGATAACGTCAG-AAATGGTTACAACGAAAAGTAAAACTGTAAAAGATCAAATTGCAC
192 AACACATGGATAACGTCAGAAAAT-GTTACAACGAAAAGTAAAACTGTAAAAGATAAAATTACAC
* * * *
6125986 AATATGTAAACGTTGAGGGTTCAATTTTTAGAATCAAAACTAAATTGGCACAATGTACAAATG
256 AATATGTAAACATTGAGAGCTCAATTTTTAGAATCAAAACTAAATTGACACAATGTACAAATG
6126049 TCAAGGGTTA
Statistics
Matches: 280, Mismatches: 27, Indels: 19
0.86 0.08 0.06
Matches are distributed among these distances:
334 4 0.01
335 128 0.46
336 2 0.01
337 4 0.01
340 2 0.01
341 43 0.15
342 5 0.02
343 1 0.00
344 48 0.17
345 37 0.13
346 6 0.02
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.38
Consensus pattern (341 bp):
TACTAATTCATTATTTGTTAGGTTAAACTGACCGCCATTAATGAAGCAAACCAAAGCTTTTTTTT
TTAAAGTAGTTAGACTAAAAATTGGGTTGACTTAATAAAGCAGGTATTTTTTATTTTCAAGCAAT
TAAATTGGTAATTTTTCAAATTTTGGGTTGTTTTATTTTCTTTCGTTTTTTTACTGAATCAAACA
CATGGATAACGTCAGAAAATGTTACAACGAAAAGTAAAACTGTAAAAGATAAAATTACACAATAT
GTAAACATTGAGAGCTCAATTTTTAGAATCAAAACTAAATTGACACAATGTACAAATGACAAATT
TAATAGCTCTGAGTGA
Found at i:6131346 original size:13 final size:14
Alignment explanation
Indices: 6131328--6131360 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
6131318 AAAATTTATA
6131328 ATAAATAACA-TTT
1 ATAAATAACATTTT
*
6131341 ATAAATAATATTTT
1 ATAAATAACATTTT
6131355 ATAAAT
1 ATAAAT
6131361 TATCCAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (14 bp):
ATAAATAACATTTT
Found at i:6131347 original size:17 final size:17
Alignment explanation
Indices: 6131311--6131351 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
6131301 TAAGTAAAAC
6131311 ATAATATAAAATTTATA
1 ATAATATAAAATTTATA
*
6131328 ATAA-ATAACATTTATAA
1 ATAATATAAAATTTAT-A
6131345 ATAATAT
1 ATAATAT
6131352 TTTATAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 10 0.48
17 9 0.43
18 2 0.10
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (17 bp):
ATAATATAAAATTTATA
Found at i:6134121 original size:20 final size:20
Alignment explanation
Indices: 6134098--6134207 Score: 80
Period size: 20 Copynumber: 5.5 Consensus size: 20
6134088 TGATATATCG
6134098 AAATTTCTAA-ACTTATACCA
1 AAATTTCTAAGA-TTATACCA
* ** **
6134118 AAATTTTTAAGGCTATATAA
1 AAATTTCTAAGATTATACCA
* * *
6134138 AAAATTCTAAGATTTTATCA
1 AAATTTCTAAGATTATACCA
6134158 AAATTTCTAATGATT-TACCA
1 AAATTTCTAA-GATTATACCA
* * *
6134178 AAATTTCTAAAAGTATACCT
1 AAATTTCTAAGATTATACCA
*
6134198 ATATTTCTAA
1 AAATTTCTAA
6134208 AGTTTTCCTT
Statistics
Matches: 70, Mismatches: 17, Indels: 6
0.75 0.18 0.06
Matches are distributed among these distances:
19 2 0.03
20 64 0.91
21 4 0.06
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.39
Consensus pattern (20 bp):
AAATTTCTAAGATTATACCA
Found at i:6134274 original size:20 final size:19
Alignment explanation
Indices: 6134249--6134329 Score: 74
Period size: 20 Copynumber: 4.1 Consensus size: 19
6134239 TCAATATTTT
* *
6134249 ATTATACTAAAATTCTTAAG
1 ATTATACAAAAATT-ATAAG
6134269 ATTATACCAAAAATTATAAG
1 ATTATA-CAAAAATTATAAG
*
6134289 GTTATACAAAAATTTATAATG
1 ATTATACAAAAA-TTATAA-G
*
6134310 ATTA-AGCAAAATTTATAAG
1 ATTATA-CAAAAATTATAAG
6134329 A
1 A
6134330 ATTTATTAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
19 8 0.15
20 28 0.54
21 16 0.31
ACGTcount: A:0.51, C:0.07, G:0.07, T:0.35
Consensus pattern (19 bp):
ATTATACAAAAATTATAAG
Found at i:6134320 original size:40 final size:40
Alignment explanation
Indices: 6134250--6134328 Score: 99
Period size: 40 Copynumber: 2.0 Consensus size: 40
6134240 CAATATTTTA
*
6134250 TTATACTAAAATTCTTAAGATTATACCAAAAATTATAAGG
1 TTATACAAAAATTCTTAAGATTATACCAAAAATTATAAGG
* *
6134290 TTATACAAAAATT-TATAATGATTA-AGCAAAATTTATAAG
1 TTATACAAAAATTCT-TAA-GATTATACCAAAAATTATAAG
6134329 AATTTATTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
39 1 0.03
40 28 0.82
41 5 0.15
ACGTcount: A:0.49, C:0.08, G:0.08, T:0.35
Consensus pattern (40 bp):
TTATACAAAAATTCTTAAGATTATACCAAAAATTATAAGG
Found at i:6134702 original size:17 final size:17
Alignment explanation
Indices: 6134672--6134705 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
6134662 ATATTGATTG
**
6134672 ATATATTTTTTATAAAT
1 ATATATTTAATATAAAT
6134689 ATATATTTAATATAAAT
1 ATATATTTAATATAAAT
6134706 TATTTTTGTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
ATATATTTAATATAAAT
Found at i:6142757 original size:20 final size:23
Alignment explanation
Indices: 6142712--6142758 Score: 64
Period size: 20 Copynumber: 2.2 Consensus size: 23
6142702 ATCTAAAAGG
6142712 TTATCATTTTCAAAATATTAATT
1 TTATCATTTTCAAAATATTAATT
*
6142735 TTATCA-TTT-AAAATA-TGATT
1 TTATCATTTTCAAAATATTAATT
6142755 TTAT
1 TTAT
6142759 TTGTTATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 8 0.35
21 6 0.26
22 3 0.13
23 6 0.26
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.53
Consensus pattern (23 bp):
TTATCATTTTCAAAATATTAATT
Found at i:6160864 original size:126 final size:126
Alignment explanation
Indices: 6160722--6161010 Score: 488
Period size: 126 Copynumber: 2.3 Consensus size: 126
6160712 GTGTTAATTT
**
6160722 AAAAAAGCTCCCACGTGGACGCTTTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGAAGAC
1 AAAAAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGAAGAC
* *
6160787 GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTA
66 GTTTCTAAGAAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTA
* * * *
6160848 AAAAAAGCTCCCACGTGGTCGCGCTTTTGCTACAATAGCTCCTGAAAAAATAATTTTGAGTAGAC
1 AAAAAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGAAGAC
*
6160913 GTTTCTAAGAAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTG
66 GTTTCTAAGAAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTA
*
6160974 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTA
1 AAAAAAGCTCCCACGTGGACGCGCTTTTGCTACAGTA
6161011 ACTTCTGTTT
Statistics
Matches: 151, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
126 151 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (126 bp):
AAAAAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGAAGAC
GTTTCTAAGAAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTA
Found at i:6162548 original size:840 final size:839
Alignment explanation
Indices: 6160930--6162610 Score: 3020
Period size: 840 Copynumber: 2.0 Consensus size: 839
6160920 AGAAAATAGT
6160930 GTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTGAAAGAAGCTCCCACGTGGACG
1 GTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTGAAAGAAGCTCCCACGTGGACG
* * *
6160995 CGCTTTTGCTACAGTAACTTCTGTTTTGCTTGAGGCTATAAATGAAGCAAAATTTTTTCTCATAT
66 CGCTTTTGCTACAGTAACTCCTGTTTGGCTTGAGGCTATAAATGAAGCAAAATTTTTTCTCAGAT
*
6161060 TGCATAAGTTACAGCAAAAAAATTTAGAGAGTCTAAGAATGATAGAAATTGAAGATGAGTGAACG
131 TGCATAAGTTACAGCAAAAAAATTTAGAGAGTCTAAGAAGGATAGAAATTGAAGATGAGTGAACG
* *
6161125 TATTAGTGCTGTTATTTACTATGATGGTAAGGTTCGTCACACCGAGAACGGTGTTATTTTTTTAT
196 TATTAGTGCTATTATTTACTATGATGGTAAGATTCGTCACACCGAGAACGGTGTTATTTTTTTAT
*
6161190 CGAATAATACAGTGCGACTGGTTTTTAACCAGAATATAGATTTGACAGAACTTCGTAAAAGAATT
261 CGAAGAATACAGTGCGACTGGTTTTTAACCAGAATATAGATTTGACAGAACTTCGTAAAAGAATT
6161255 AGCGTAAAATATTCGGAACAACGCCAATGAAAGTTCTGTCTATTACGTATCGATTTTGTTATTCT
326 AGCGTAAAATATTCGGAACAACGCCAATGAAAGTTCTGTCTATTACGTATCGATTTTGTTATTCT
* * *
6161320 GTTGATCCTGTGACATATAACTCGTTCGACGTAAAAGGTGTTCGTAGCTTGGAGGTAATGGTGCA
391 GTTGATCCGGTGACATATAACTCGTTCGACGTAAAAAGTGTTCGTAGCTTGGAGGCAATGGTGCA
* * * ** * *
6161385 GACTCGTCTCATTAGTGGAGCACCTTATATGGAGTTATATGTATAATTTACATTGCCAAATGATG
456 GACTCGTCTCACTAGTGGAACACATTATATACAGTTATATGTACAATTTACATCGCCAAATGATG
*
6161450 CACTTGCAACTGTTGTTCGAGAGGTATACATGACCCCTGCTTAACACTCGGTTAGTGGGTTACAA
521 CACTTGCAACTGTTGTTCGAGAGGTATACATGACCCCTGCTCAACACTCGGTTAGTGGGTTACAA
*
6161515 AATACGGAACAACCCATGTTTAGTAGCGGTATGGAATACACATCCCCTGCACAACACTCTGTCAG
586 AATACGGAACAACCCATGTTTAGTAGCGGTATGGAATACACATCCCCTGCACAACACTCTATCAG
*
6161580 TGGATGGGGCATGCACCTCGGTGGGTCGATGTTTGATGCTGGAAATACGTATTGGAGAACGGCAT
651 TGGATGGGGCATGCACCTCAGTGGGTCGATGTTTGATGCTGGAAATACGTATTGGAGAACGGCAT
*
6161645 CAACTTCTAGTGGTTGGCAATCTACATCCAATTGGGGACGTTATGAAATGCCTAGAAGAAGGGAT
716 CAACTTCTAGTGGTTGGCAATCTACATCCAATTGGGGACGTTATGAAACGCCTAGAAGAAGGGAT
* * * *
6161710 GATGTACTCTTTACAACGTCCACCGGTGAGGGGACCTCGTACGTTGCAGATGATGGTGG
781 GATGTACTCTCTACAACGTCCACCAGTAAGGGGACCTCATACGTTGCAGATGATGGTGG
6161769 GTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTGAAAGAAGCTCCCACGTGGACG
1 GTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTGAAAGAAGCTCCCACGTGGACG
* *
6161834 CGCTTTTGCTACAGTAGCTCCTGTTTGGCTTGAGGCTATAAATGAAGCAAATTTTTTTCTCAGAT
66 CGCTTTTGCTACAGTAACTCCTGTTTGGCTTGAGGCTATAAATGAAGCAAAATTTTTTCTCAGAT
6161899 TGCATAAGTTACAGCAAAAAAAATTTAGAGAGTCTAAGAAGGATAGAAATTGAAGATGAGTGAAC
131 TGCATAAGTTACAGC-AAAAAAATTTAGAGAGTCTAAGAAGGATAGAAATTGAAGATGAGTGAAC
* * *
6161964 GTATTAGTGTTATTATTTACTATGATGGTGAGATTCGTCACATCGAGAACGGTGTTATTTTTTTA
195 GTATTAGTGCTATTATTTACTATGATGGTAAGATTCGTCACACCGAGAACGGTGTTATTTTTTTA
*
6162029 TCGAAGAATACAGTGCGACTGGTTTTTAACCAGAATATAGATTTGACAGAACTTCGTAAATGAAT
260 TCGAAGAATACAGTGCGACTGGTTTTTAACCAGAATATAGATTTGACAGAACTTCGTAAAAGAAT
**
6162094 TAGCGTAAAATATTCGGAATGACGCCAATGAAAGTTCTGTCTATTACGTATCGATTTTGTTATTC
325 TAGCGTAAAATATTCGGAACAACGCCAATGAAAGTTCTGTCTATTACGTATCGATTTTGTTATTC
6162159 TGTTGATCCGGTGACATATAACTCGTTCGACGTAAAAAGTGTTCGTAGCTTGGAGGCAATGGTGC
390 TGTTGATCCGGTGACATATAACTCGTTCGACGTAAAAAGTGTTCGTAGCTTGGAGGCAATGGTGC
*
6162224 TGACTCGTCTCACTAGTGGAACACATTATATACAGTTATATGTACAATTTACATCGCCAAATGAT
455 AGACTCGTCTCACTAGTGGAACACATTATATACAGTTATATGTACAATTTACATCGCCAAATGAT
6162289 GCACTTGCAACTGTTGTTCGAGAGGTATACATGACCCCTGCTCAACACTCGGTTAGTGGGTTACA
520 GCACTTGCAACTGTTGTTCGAGAGGTATACATGACCCCTGCTCAACACTCGGTTAGTGGGTTACA
*
6162354 AAATACGGAACAGCCCATGTTTAGTAGCGGTATGGAATACACATCCCCTGCACAACACTCTATCA
585 AAATACGGAACAACCCATGTTTAGTAGCGGTATGGAATACACATCCCCTGCACAACACTCTATCA
*
6162419 GTGGATGGGGCATGCACCTCAGTGGGTCGATGTTTGATGCTGGAAATACGTATTGGGGAACGGCA
650 GTGGATGGGGCATGCACCTCAGTGGGTCGATGTTTGATGCTGGAAATACGTATTGGAGAACGGCA
6162484 TCAACTTCTAGTGGTTGGCAATCTACATCCAATTGGGGACGTTATGAAACGCCTAGAAGAAGGGA
715 TCAACTTCTAGTGGTTGGCAATCTACATCCAATTGGGGACGTTATGAAACGCCTAGAAGAAGGGA
*
6162549 TGATGTACTCTCTACGACGTCCACCAGTAAGGGGACCTCATACGTTGCAGATGATGGTGG
780 TGATGTACTCTCTACAACGTCCACCAGTAAGGGGACCTCATACGTTGCAGATGATGGTGG
6162609 GT
1 GT
6162611 TAGAAGATGA
Statistics
Matches: 804, Mismatches: 37, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
839 140 0.17
840 664 0.83
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (839 bp):
GTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTGAAAGAAGCTCCCACGTGGACG
CGCTTTTGCTACAGTAACTCCTGTTTGGCTTGAGGCTATAAATGAAGCAAAATTTTTTCTCAGAT
TGCATAAGTTACAGCAAAAAAATTTAGAGAGTCTAAGAAGGATAGAAATTGAAGATGAGTGAACG
TATTAGTGCTATTATTTACTATGATGGTAAGATTCGTCACACCGAGAACGGTGTTATTTTTTTAT
CGAAGAATACAGTGCGACTGGTTTTTAACCAGAATATAGATTTGACAGAACTTCGTAAAAGAATT
AGCGTAAAATATTCGGAACAACGCCAATGAAAGTTCTGTCTATTACGTATCGATTTTGTTATTCT
GTTGATCCGGTGACATATAACTCGTTCGACGTAAAAAGTGTTCGTAGCTTGGAGGCAATGGTGCA
GACTCGTCTCACTAGTGGAACACATTATATACAGTTATATGTACAATTTACATCGCCAAATGATG
CACTTGCAACTGTTGTTCGAGAGGTATACATGACCCCTGCTCAACACTCGGTTAGTGGGTTACAA
AATACGGAACAACCCATGTTTAGTAGCGGTATGGAATACACATCCCCTGCACAACACTCTATCAG
TGGATGGGGCATGCACCTCAGTGGGTCGATGTTTGATGCTGGAAATACGTATTGGAGAACGGCAT
CAACTTCTAGTGGTTGGCAATCTACATCCAATTGGGGACGTTATGAAACGCCTAGAAGAAGGGAT
GATGTACTCTCTACAACGTCCACCAGTAAGGGGACCTCATACGTTGCAGATGATGGTGG
Found at i:6163311 original size:29 final size:29
Alignment explanation
Indices: 6163256--6163311 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 29
6163246 CAAAAAAAAT
*
6163256 AAAATTAAAGCTTTTTTTAAAATAATTAA
1 AAAATTAAAGCTTTTTTTAAAAGAATTAA
6163285 AAAATTAAAGC-TTTTTTAAGAAGAATT
1 AAAATTAAAGCTTTTTTTAA-AAGAATT
6163312 TGAGAGGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 8 0.32
29 17 0.68
ACGTcount: A:0.50, C:0.04, G:0.07, T:0.39
Consensus pattern (29 bp):
AAAATTAAAGCTTTTTTTAAAAGAATTAA
Found at i:6163330 original size:11 final size:11
Alignment explanation
Indices: 6163307--6163347 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
6163297 TTTTTAAGAA
*
6163307 GAATTTGAGAG
1 GAATTTGAAAG
*
6163318 GAAATTGAAAG
1 GAATTTGAAAG
*
6163329 GATTTTGAAAG
1 GAATTTGAAAG
6163340 GAATTTGA
1 GAATTTGA
6163348 GAGAATATTG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.41, C:0.00, G:0.29, T:0.29
Consensus pattern (11 bp):
GAATTTGAAAG
Found at i:6163336 original size:22 final size:22
Alignment explanation
Indices: 6163305--6163369 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
6163295 CTTTTTTAAG
6163305 AAGAA-TTTGAGAGGAAATTGA
1 AAGAATTTTGAGAGGAAATTGA
* * *
6163326 AAGGATTTTGAAAGGAATTTGA
1 AAGAATTTTGAGAGGAAATTGA
* *
6163348 GAGAATATTG-GAGAGAAATTGA
1 AAGAATTTTGAGAG-GAAATTGA
6163370 GAAAAAGGAT
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
21 6 0.18
22 28 0.82
ACGTcount: A:0.45, C:0.00, G:0.29, T:0.26
Consensus pattern (22 bp):
AAGAATTTTGAGAGGAAATTGA
Found at i:6165346 original size:20 final size:19
Alignment explanation
Indices: 6165292--6165347 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 19
6165282 AAATTTATAT
6165292 ATAATTAAT-TATTATTTA
1 ATAATTAATATATTATTTA
6165310 ACTAAATCTAA-AT-TTATTTA
1 A-T-AAT-TAATATATTATTTA
6165330 ATAATATAATATATTATT
1 ATAAT-TAATATATTATT
6165348 ATTTACGAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 10
0.74 0.02 0.24
Matches are distributed among these distances:
18 7 0.23
19 4 0.13
20 16 0.52
21 4 0.13
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (19 bp):
ATAATTAATATATTATTTA
Found at i:6169568 original size:18 final size:17
Alignment explanation
Indices: 6169535--6169573 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
6169525 TTTTATAAAT
6169535 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
6169553 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
6169570 TGTG
1 TGTG
6169574 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:6169874 original size:23 final size:23
Alignment explanation
Indices: 6169799--6169874 Score: 100
Period size: 23 Copynumber: 3.3 Consensus size: 23
6169789 AGTGTTATTG
*
6169799 ATCAGTGGTAGCTTCAGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* * *
6169822 TTTAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
6169845 AGT-AGTGGTAGCTTCGGCTACAT
1 A-TCAGTGGTAGCTTCGGCTACAT
6169868 ATCAGTG
1 ATCAGTG
6169875 TGACACTTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
22 1 0.02
23 43 0.96
24 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:6172743 original size:11 final size:11
Alignment explanation
Indices: 6172729--6172795 Score: 57
Period size: 11 Copynumber: 6.2 Consensus size: 11
6172719 ATATTCAAAC
6172729 AATAATAACAA
1 AATAATAACAA
* *
6172740 AATAGTAGCAA
1 AATAATAACAA
*
6172751 AATATTGAA-AA
1 AATAAT-AACAA
*
6172762 AATAATAAGAA
1 AATAATAACAA
*
6172773 AATAATAGCAA
1 AATAATAACAA
*
6172784 AACAATAA-AA
1 AATAATAACAA
6172794 AA
1 AA
6172796 AACAAGAAGA
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
10 6 0.13
11 38 0.84
12 1 0.02
ACGTcount: A:0.69, C:0.06, G:0.07, T:0.18
Consensus pattern (11 bp):
AATAATAACAA
Found at i:6172755 original size:33 final size:33
Alignment explanation
Indices: 6172718--6172785 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 33
6172708 AGAGTTATAC
* *
6172718 AATATTCAAACAATAATAACAAAATAGTAGCAA
1 AATATTCAAAAAATAATAACAAAATAATAGCAA
* *
6172751 AATATTGAAAAAATAATAAGAAAATAATAGCAA
1 AATATTCAAAAAATAATAACAAAATAATAGCAA
6172784 AA
1 AA
6172786 CAATAAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.65, C:0.07, G:0.07, T:0.21
Consensus pattern (33 bp):
AATATTCAAAAAATAATAACAAAATAATAGCAA
Found at i:6172795 original size:33 final size:33
Alignment explanation
Indices: 6172729--6172796 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 33
6172719 ATATTCAAAC
* * * *
6172729 AATAATAACAAAATAGTAGCAAAATATTGAAAA
1 AATAATAACAAAATAATAGCAAAACAATAAAAA
*
6172762 AATAATAAGAAAATAATAGCAAAACAATAAAAA
1 AATAATAACAAAATAATAGCAAAACAATAAAAA
6172795 AA
1 AA
6172797 ACAAGAAGAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.69, C:0.06, G:0.07, T:0.18
Consensus pattern (33 bp):
AATAATAACAAAATAATAGCAAAACAATAAAAA
Found at i:6179233 original size:32 final size:32
Alignment explanation
Indices: 6179197--6179265 Score: 138
Period size: 32 Copynumber: 2.2 Consensus size: 32
6179187 CATGCACACA
6179197 AACATTCATAGGTGAATAAATGACATCCTACT
1 AACATTCATAGGTGAATAAATGACATCCTACT
6179229 AACATTCATAGGTGAATAAATGACATCCTACT
1 AACATTCATAGGTGAATAAATGACATCCTACT
6179261 AACAT
1 AACAT
6179266 ATGGGGCGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.28
Consensus pattern (32 bp):
AACATTCATAGGTGAATAAATGACATCCTACT
Found at i:6184112 original size:127 final size:125
Alignment explanation
Indices: 6183828--6184396 Score: 847
Period size: 126 Copynumber: 4.5 Consensus size: 125
6183818 GATAAAATCA
* * * * * * * *
6183828 AAGCAGGATGCT-TTATCAGAAGGATTTCTGAAGTCGCACCCACGTGTACGCGCTTTTGCTATAG
1 AAGCAGGATGCTATT-TGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
* * * *
6183892 TGGGTCCTGTAAAAATAATTTCGAGTTCACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
65 TAGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAACGCTTC
**
6183953 AAGCAGGATGCT-TTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCAATTTTGCTACAG
1 AAGCAGGATGCTATT-TGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
*
6184017 TAGGTCCTGGAATAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAAATGCTTC
65 TAGGTCCTGGAA-AAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTT-AAAAAACGCTTC
*
6184080 AAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAAT
1 AAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
* * *
6184145 AGGTCCTGAAAGAAATAATTTCGAGTTGATGTTTCGGAGCAAATAGTTTAAAAAACGCTTC
66 AGGTCCTGGAA-AAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAACGCTTC
*
6184206 AAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGTTTTTGCTACAGT
1 AAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
* * *
6184271 AGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTAT-AAAAATGCTTC
66 AGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAACGCTTC
* *
6184330 TAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCACCCTCGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
6184395 AG
66 AG
6184397 CATGTTTGGG
Statistics
Matches: 407, Mismatches: 34, Indels: 7
0.91 0.08 0.02
Matches are distributed among these distances:
124 74 0.18
125 97 0.24
126 119 0.29
127 115 0.28
128 2 0.00
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (125 bp):
AAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
AGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAACGCTTC
Found at i:6184241 original size:253 final size:249
Alignment explanation
Indices: 6183828--6184392 Score: 882
Period size: 253 Copynumber: 2.3 Consensus size: 249
6183818 GATAAAATCA
* * * * * * * *
6183828 AAGCAGGATGCT-TTATCAGAAGGATTTCTGAAGTCGCACCCACGTGTACGCGCTTTTGCTATAG
1 AAGCAGGATGCTATT-TGAGAAGAATTTGTGAAATCGCACCCTCGTGGACGCGCTTTTGCTACAA
* * *
6183892 TGGGTCCTGTAAAAATAATTTCGAGTTCACGTTTCTGAGCAAATAGTATAAAAAACGCTTCAAGC
65 TAGGTCCTGAAAAAATAATTTCGAGTTCACGTTTCGGAGCAAATAGTATAAAAAACGCTTCAAGC
6183957 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCAATTTTGCTACAGTAGGT
130 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCAATTTTGCTACAGTAGGT
*
6184022 CCTGGAATAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAAATGCTTC
195 CCTGGAA-AAATAATTTCGAGTTGACGTTTCTGAGAAAATAG--TAAAAAAATGCTTC
*
6184080 AAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAAT
1 AAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCACCCTCGTGGACGCGCTTTTGCTACAAT
* * *
6184145 AGGTCCTGAAAGAAATAATTTCGAGTTGATGTTTCGGAGCAAATAGTTTAAAAAACGCTTCAAGC
66 AGGTCCTGAAA-AAATAATTTCGAGTTCACGTTTCGGAGCAAATAGTATAAAAAACGCTTCAAGC
**
6184210 AGGATGCTATT-TGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGTTTTTGCTACAGTAGG
130 AGGATGCT-TTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCAATTTTGCTACAGTAGG
*
6184274 TCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTATAAAAATGCTTC
194 TCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTAAAAAAATGCTTC
*
6184330 TAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCACCCTCGTGGACGCGCTTTTGCTACA
1 AAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCACCCTCGTGGACGCGCTTTTGCTACA
6184393 GTAGCATGTT
Statistics
Matches: 289, Mismatches: 21, Indels: 8
0.91 0.07 0.03
Matches are distributed among these distances:
250 74 0.26
252 95 0.33
253 118 0.41
254 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.29
Consensus pattern (249 bp):
AAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCACCCTCGTGGACGCGCTTTTGCTACAAT
AGGTCCTGAAAAAATAATTTCGAGTTCACGTTTCGGAGCAAATAGTATAAAAAACGCTTCAAGCA
GGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCAATTTTGCTACAGTAGGTC
CTGGAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTAAAAAAATGCTTC
Found at i:6187111 original size:13 final size:13
Alignment explanation
Indices: 6187063--6187111 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
6187053 AATATAATAA
6187063 ATATTTATTTTTT
1 ATATTTATTTTTT
* *
6187076 ATTTTTTATTTTTA
1 A-TATTTATTTTTT
* *
6187090 AAATATATTTTTT
1 ATATTTATTTTTT
6187103 ATATTTATT
1 ATATTTATT
6187112 AAAAATCGGC
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
ATATTTATTTTTT
Found at i:6187946 original size:21 final size:21
Alignment explanation
Indices: 6187916--6188042 Score: 132
Period size: 21 Copynumber: 6.0 Consensus size: 21
6187906 TCAAATTATA
6187916 TTTAAGTTAAGGGTTAAGGTT
1 TTTAAGTTAAGGGTTAAGGTT
* * *
6187937 TTTAACTTAAGTGTTAGGGTT
1 TTTAAGTTAAGGGTTAAGGTT
* * *
6187958 TTTTATTTAAGGGTTACGGTT
1 TTTAAGTTAAGGGTTAAGGTT
*
6187979 TTAAAGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGG-TTAAGGTT
6188001 TTTAA-TTCAAGGGTTACA-GTT
1 TTTAAGTT-AAGGGTTA-AGGTT
* *
6188022 TTTAAGTTGAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAAGGTT
6188043 AGGGTTTTTA
Statistics
Matches: 87, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
21 68 0.78
22 19 0.22
ACGTcount: A:0.25, C:0.03, G:0.27, T:0.45
Consensus pattern (21 bp):
TTTAAGTTAAGGGTTAAGGTT
Found at i:6187989 original size:42 final size:42
Alignment explanation
Indices: 6187916--6188042 Score: 155
Period size: 43 Copynumber: 3.0 Consensus size: 42
6187906 TCAAATTATA
* * * *
6187916 TTTAAGTTAAGGGTTAAGGTTTTTAACTTAAGTGTTAGGGTT
1 TTTAATTTAAGGGTTACGGTTTTTAAGTTAAGGGTTAGGGTT
* * *
6187958 TTTTATTTAAGGGTTACGGTTTTAAAGTTAAGGGTTTAAGGTT
1 TTTAATTTAAGGGTTACGGTTTTTAAGTTAAGGG-TTAGGGTT
* * *
6188001 TTTAATTCAAGGGTTACAGTTTTTAAGTTGAGGGTTAGGGTT
1 TTTAATTTAAGGGTTACGGTTTTTAAGTTAAGGGTTAGGGTT
6188043 AGGGTTTTTA
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
42 35 0.49
43 36 0.51
ACGTcount: A:0.25, C:0.03, G:0.27, T:0.45
Consensus pattern (42 bp):
TTTAATTTAAGGGTTACGGTTTTTAAGTTAAGGGTTAGGGTT
Found at i:6188023 original size:64 final size:63
Alignment explanation
Indices: 6187919--6188042 Score: 160
Period size: 64 Copynumber: 2.0 Consensus size: 63
6187909 AATTATATTT
* ** * *
6187919 AAGTTAAGGGTTAAGGTTTTTAACTTAAGTGTTAGGGTTTTTTATTTAAGGGTTACGGTTTTA
1 AAGTTAAGGGTTAAGGTTTTTAACTTAAGGGTTACAGTTTTTAAGTTAAGGGTTACGGTTTTA
* *
6187982 AAGTTAAGGGTTTAAGGTTTTTAA-TTCAAGGGTTACAGTTTTTAAGTTGAGGGTTAGGGTT
1 AAGTTAAGGG-TTAAGGTTTTTAACTT-AAGGGTTACAGTTTTTAAGTTAAGGGTTACGGTT
6188043 AGGGTTTTTA
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
63 12 0.23
64 40 0.77
ACGTcount: A:0.26, C:0.03, G:0.27, T:0.44
Consensus pattern (63 bp):
AAGTTAAGGGTTAAGGTTTTTAACTTAAGGGTTACAGTTTTTAAGTTAAGGGTTACGGTTTTA
Found at i:6188042 original size:27 final size:27
Alignment explanation
Indices: 6188010--6188063 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
6188000 TTTTAATTCA
*
6188010 AGGGTTACAGTTTTTAAGTTGAGGGTT
1 AGGGTTACAGTTTTTAAGTTAAGGGTT
** *
6188037 AGGGTTAGGGTTTTTAGGTTAAGGGTT
1 AGGGTTACAGTTTTTAAGTTAAGGGTT
6188064 TAAGGTTTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.20, C:0.02, G:0.37, T:0.41
Consensus pattern (27 bp):
AGGGTTACAGTTTTTAAGTTAAGGGTT
Found at i:6189528 original size:20 final size:20
Alignment explanation
Indices: 6189491--6189528 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
6189481 TTTATTTTTA
*
6189491 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
6189511 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
6189529 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:6190519 original size:51 final size:51
Alignment explanation
Indices: 6190464--6190563 Score: 112
Period size: 51 Copynumber: 2.0 Consensus size: 51
6190454 AATGATTTAA
* *
6190464 AAATAGGGATTTAAGAGAAATTT-AATAGGAACTTGAGAATAAATTGAGATT
1 AAATAGAGATTTAAGAGAAATTTGAA-AGGAACTTGAGAACAAATTGAGATT
* ** * * *
6190515 AAATATAGATTTGGGAGAAATTTGGAAGGAATTTGAGAGCAAATTGAGA
1 AAATAGAGATTTAAGAGAAATTTGAAAGGAACTTGAGAACAAATTGAGA
6190564 GGAAATTTGG
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
51 39 0.98
52 1 0.03
ACGTcount: A:0.45, C:0.02, G:0.25, T:0.28
Consensus pattern (51 bp):
AAATAGAGATTTAAGAGAAATTTGAAAGGAACTTGAGAACAAATTGAGATT
Found at i:6190548 original size:22 final size:22
Alignment explanation
Indices: 6190523--6190577 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
6190513 TTAAATATAG
6190523 ATTTGGGAGAAATTTG-GAAGG-A
1 ATTTGGGAGAAA-TTGAG-AGGAA
*
6190545 ATTTGAGAGCAAATTGAGAGGAA
1 ATTTGGGAG-AAATTGAGAGGAA
6190568 ATTTGGGAGA
1 ATTTGGGAGA
6190578 GGATTAGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
22 15 0.54
23 13 0.46
ACGTcount: A:0.38, C:0.02, G:0.35, T:0.25
Consensus pattern (22 bp):
ATTTGGGAGAAATTGAGAGGAA
Found at i:6193979 original size:23 final size:24
Alignment explanation
Indices: 6193952--6193997 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
6193942 ATTAAATTAG
*
6193952 AAAACTCTTAA-TTTAAAGAAAAT
1 AAAACTCTTAATTTTAAAAAAAAT
6193975 AAAACTCTTAATTTTAAAAAAAA
1 AAAACTCTTAATTTTAAAAAAAA
6193998 ATAATACATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.59, C:0.09, G:0.02, T:0.30
Consensus pattern (24 bp):
AAAACTCTTAATTTTAAAAAAAAT
Found at i:6195951 original size:18 final size:18
Alignment explanation
Indices: 6195930--6195964 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
6195920 ACTTTACTAA
* *
6195930 TCAAGTGATGCCTTCAAC
1 TCAAATGATGCCCTCAAC
6195948 TCAAATGATGCCCTCAA
1 TCAAATGATGCCCTCAA
6195965 ATTCTGTGAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (18 bp):
TCAAATGATGCCCTCAAC
Found at i:6199622 original size:22 final size:22
Alignment explanation
Indices: 6199583--6199636 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 22
6199573 TATAATTTTA
** * *
6199583 AAATATATGTTAAATAATCATT
1 AAATATATAATAAATAATAAAT
*
6199605 AAATATATAATAAGTAATAAAT
1 AAATATATAATAAATAATAAAT
*
6199627 ATATATATAA
1 AAATATATAA
6199637 ATTATATTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (22 bp):
AAATATATAATAAATAATAAAT
Found at i:6203302 original size:18 final size:18
Alignment explanation
Indices: 6203250--6203305 Score: 67
Period size: 18 Copynumber: 2.9 Consensus size: 18
6203240 TGACAAAAAA
6203250 TTCTCAAATTTCTCCCTAAAT
1 TTCTCAAATTTCT--C-AAAT
**
6203271 TTCTCAAAGCTCTCAAAT
1 TTCTCAAATTTCTCAAAT
6203289 TTCTCAAATTTCTCAAA
1 TTCTCAAATTTCTCAAA
6203306 GCTCTCTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
18 19 0.61
19 1 0.03
21 11 0.35
ACGTcount: A:0.32, C:0.27, G:0.02, T:0.39
Consensus pattern (18 bp):
TTCTCAAATTTCTCAAAT
Found at i:6203305 original size:27 final size:29
Alignment explanation
Indices: 6203251--6203311 Score: 99
Period size: 27 Copynumber: 2.1 Consensus size: 29
6203241 GACAAAAAAT
6203251 TCTCAAATTTCTCCCTAAATTTCTCAAAGC
1 TCTCAAATTTCT-CCTAAATTTCTCAAAGC
6203281 TCTCAAATTTCT-C-AAATTTCTCAAAGC
1 TCTCAAATTTCTCCTAAATTTCTCAAAGC
6203308 TCTC
1 TCTC
6203312 TTTAATTAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
27 18 0.58
28 1 0.03
30 12 0.39
ACGTcount: A:0.30, C:0.30, G:0.03, T:0.38
Consensus pattern (29 bp):
TCTCAAATTTCTCCTAAATTTCTCAAAGC
Found at i:6205080 original size:18 final size:18
Alignment explanation
Indices: 6205057--6205094 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
6205047 TGCCAGGTGC
* *
6205057 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTCATAT
6205075 GTATCCTAACCCTCATAT
1 GTATCCTAACCCTCATAT
6205093 GT
1 GT
6205095 TTTCTTTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.29, G:0.11, T:0.37
Consensus pattern (18 bp):
GTATCCTAACCCTCATAT
Found at i:6208828 original size:125 final size:126
Alignment explanation
Indices: 6208605--6208872 Score: 421
Period size: 125 Copynumber: 2.1 Consensus size: 126
6208595 GGTCAAACAT
* *
6208605 GAACTACTGTAGAAAAAGAACGTTGATGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATC
1 GAACTACTGTAGAAAAAGAACGTCGACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATC
*
6208670 CTGCTTAAAGCGTTTTTGACACTATTTGTTCAGAACCGTCTTCTCAAAATTATTTTTTCAG
66 CTGCTTAAAGCGTTTTTGACACTATTTGTTCAGAACCGTATTCTCAAAATTATTTTTTCAG
** * *
6208731 GAACTACTGTAGAAAAAGAGTGTCGACGTGGGAGC-TTTTTCAGTAATTTTGTTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAACGTCGACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATC
* * *
6208795 TTGCTTGAAGTGTTTTTGACACTATTTGTTCAGAACCGTATTCTCAAAATTATTTTTTCAG
66 CTGCTTAAAGCGTTTTTGACACTATTTGTTCAGAACCGTATTCTCAAAATTATTTTTTCAG
* *
6208856 GAACTATTATAGAAAAA
1 GAACTACTGTAGAAAAA
6208873 AATAAAATCC
Statistics
Matches: 130, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
125 99 0.76
126 31 0.24
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGAACGTCGACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATC
CTGCTTAAAGCGTTTTTGACACTATTTGTTCAGAACCGTATTCTCAAAATTATTTTTTCAG
Found at i:6208972 original size:33 final size:31
Alignment explanation
Indices: 6208928--6209040 Score: 147
Period size: 33 Copynumber: 3.5 Consensus size: 31
6208918 TAAACACAAT
6208928 ATTA-TTTTTAAAAAACTAAACCCTAATTTA
1 ATTATTTTTTAAAAAACTAAACCCTAATTTA
6208958 ATTGATTTTCTTAAAAAACTAAACCCTAATTTA
1 ATT-ATTTT-TTAAAAAACTAAACCCTAATTTA
**
6208991 ATTTATTTATTTAAAACTCCTAAACCCTAATTTA
1 A-TTATTT-TTTAAAA-AACTAAACCCTAATTTA
*
6209025 ATTATTTTTAAAAAAA
1 ATTATTTTTTAAAAAA
6209041 ACACTAAATC
Statistics
Matches: 72, Mismatches: 5, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
30 3 0.04
31 1 0.01
32 9 0.12
33 40 0.56
34 19 0.26
ACGTcount: A:0.44, C:0.13, G:0.01, T:0.42
Consensus pattern (31 bp):
ATTATTTTTTAAAAAACTAAACCCTAATTTA
Found at i:6209133 original size:42 final size:41
Alignment explanation
Indices: 6209086--6209165 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 41
6209076 AACGTAGAAC
* *
6209086 CCTAAATTATTTTAACAAAACCTTAAACCCTACAAACCTAAG
1 CCTAAATTATTATAACAAAACCTT-AACCCTAAAAACCTAAG
*
6209128 CCTAAATTATTATAACAAAATCTTAACCCTAAAAACCT
1 CCTAAATTATTATAACAAAACCTTAACCCTAAAAACCT
6209166 TAAACCAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
41 13 0.37
42 22 0.63
ACGTcount: A:0.46, C:0.25, G:0.01, T:0.28
Consensus pattern (41 bp):
CCTAAATTATTATAACAAAACCTTAACCCTAAAAACCTAAG
Found at i:6215431 original size:46 final size:46
Alignment explanation
Indices: 6215368--6215468 Score: 157
Period size: 46 Copynumber: 2.2 Consensus size: 46
6215358 ATTGCTATAG
* * * *
6215368 CTCAGTATGATTTTCTTCACGAAAATACCATATCTACTTTTCACAA
1 CTCAATATGATTTTCTTCACCAAAACACCATACCTACTTTTCACAA
*
6215414 CTCAATATGGTTTTCTTCACCAAAACACCATACCTACTTTTCACAA
1 CTCAATATGATTTTCTTCACCAAAACACCATACCTACTTTTCACAA
6215460 CTCAATATG
1 CTCAATATG
6215469 TACCTACTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.35
Consensus pattern (46 bp):
CTCAATATGATTTTCTTCACCAAAACACCATACCTACTTTTCACAA
Found at i:6215473 original size:25 final size:25
Alignment explanation
Indices: 6215444--6215493 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
6215434 CAAAACACCA
6215444 TACCTACTTTTCACAACTCAATATG
1 TACCTACTTTTCACAACTCAATATG
* *
6215469 TACCTACTTTTCATAACTCAGTATG
1 TACCTACTTTTCACAACTCAATATG
6215494 ATTTTCTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.38
Consensus pattern (25 bp):
TACCTACTTTTCACAACTCAATATG
Found at i:6215480 original size:71 final size:71
Alignment explanation
Indices: 6215401--6215539 Score: 215
Period size: 71 Copynumber: 2.0 Consensus size: 71
6215391 AATACCATAT
*
6215401 CTACTTTTCACAACTCAATATGGTTTTCTTCACCAAAACACCATACCTACTTTTCACAACTCAAT
1 CTACTTTTCACAACTCAATATGATTTTCTTCACCAAAACACCATACCTACTTTTCACAACTCAAT
6215466 ATGTAC
66 ATGTAC
* * * * * *
6215472 CTACTTTTCATAACTCAGTATGATTTTCTTTACCGAAATACCATACCTACTTTTCACAACTCAGT
1 CTACTTTTCACAACTCAATATGATTTTCTTCACCAAAACACCATACCTACTTTTCACAACTCAAT
6215537 ATG
66 ATG
6215540 ATTTTCTTTA
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 61 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (71 bp):
CTACTTTTCACAACTCAATATGATTTTCTTCACCAAAACACCATACCTACTTTTCACAACTCAAT
ATGTAC
Found at i:6215522 original size:46 final size:46
Alignment explanation
Indices: 6215469--6215619 Score: 230
Period size: 46 Copynumber: 3.3 Consensus size: 46
6215459 ACTCAATATG
6215469 TACCTACTTTTCATAACTCAGTATGATTTTCTTTACCGAAATACCA
1 TACCTACTTTTCATAACTCAGTATGATTTTCTTTACCGAAATACCA
* * **
6215515 TACCTACTTTTCACAACTCAGTATGATTTTCTTTATCGAAATATTA
1 TACCTACTTTTCATAACTCAGTATGATTTTCTTTACCGAAATACCA
* * *
6215561 TACCTACTTTTCATAACTCAGTATGGTTTTCTTCACTGAAATACCA
1 TACCTACTTTTCATAACTCAGTATGATTTTCTTTACCGAAATACCA
*
6215607 TACCTACGTTTCA
1 TACCTACTTTTCA
6215620 CACTTTGCCA
Statistics
Matches: 93, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 93 1.00
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.40
Consensus pattern (46 bp):
TACCTACTTTTCATAACTCAGTATGATTTTCTTTACCGAAATACCA
Found at i:6215579 original size:117 final size:117
Alignment explanation
Indices: 6215368--6215585 Score: 312
Period size: 117 Copynumber: 1.9 Consensus size: 117
6215358 ATTGCTATAG
* *
6215368 CTCAGTATGATTTTCTTCACGAAAATACCATATCTACTTTTCACAACTCAATATGGTTTTCTTCA
1 CTCAGTATGATTTTCTTCACGAAAATACCATACCTACTTTTCACAACTCAATATGATTTTCTTCA
6215433 CCAAAACACCATACCTACTTTTCACAACTCAATATGTACCTACTTTTCATAA
66 CCAAAACACCATACCTACTTTTCACAACTCAATATGTACCTACTTTTCATAA
* * *
6215485 CTCAGTATGATTTTCTTTACCG-AAATACCATACCTACTTTTCACAACTCAGTATGATTTTCTTT
1 CTCAGTATGATTTTCTTCA-CGAAAATACCATACCTACTTTTCACAACTCAATATGATTTTCTTC
* * * ** * *
6215549 ATCGAAATATTATACCTACTTTTCATAACTCAGTATG
65 ACCAAAACACCATACCTACTTTTCACAACTCAATATG
6215586 GTTTTCTTCA
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
117 86 0.98
118 2 0.02
ACGTcount: A:0.31, C:0.24, G:0.06, T:0.38
Consensus pattern (117 bp):
CTCAGTATGATTTTCTTCACGAAAATACCATACCTACTTTTCACAACTCAATATGATTTTCTTCA
CCAAAACACCATACCTACTTTTCACAACTCAATATGTACCTACTTTTCATAA
Found at i:6223249 original size:21 final size:19
Alignment explanation
Indices: 6223199--6223254 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 19
6223189 AAAGTGTGAC
6223199 ATAATTCAATATTATTAAA
1 ATAATTCAATATTATTAAA
6223218 ATCAATGTCAA-ATTCATTAAA
1 AT-AAT-TCAATATT-ATTAAA
*
6223239 GTATAATTCAACATTA
1 --ATAATTCAATATTA
6223255 ATTTAGTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
19 2 0.06
20 6 0.19
21 15 0.48
22 6 0.19
23 2 0.06
ACGTcount: A:0.48, C:0.11, G:0.04, T:0.38
Consensus pattern (19 bp):
ATAATTCAATATTATTAAA
Found at i:6224885 original size:23 final size:23
Alignment explanation
Indices: 6224849--6224908 Score: 68
Period size: 23 Copynumber: 2.5 Consensus size: 23
6224839 TTAAGATTGT
*
6224849 TAAATTTAATAAATA-AAAAATTA
1 TAAATTTAA-AAATATAAAAATAA
*
6224872 TAAATTTATAAAATATTAAAATAA
1 TAAATTTA-AAAATATAAAAATAA
6224896 TATAATTTAAAAA
1 TA-AATTTAAAAA
6224909 GTGAAAGATT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
23 13 0.41
24 13 0.41
25 6 0.19
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (23 bp):
TAAATTTAAAAATATAAAAATAA
Found at i:6224899 original size:18 final size:19
Alignment explanation
Indices: 6224856--6224900 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
6224846 TGTTAAATTT
6224856 AATAA-ATAAAAAATTATA
1 AATAATATAAAAAATTATA
* *
6224874 AAT-TTATAAAATATTA-A
1 AATAATATAAAAAATTATA
6224891 AATAATATAA
1 AATAATATAA
6224901 TTTAAAAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AATAATATAAAAAATTATA
Found at i:6225348 original size:25 final size:24
Alignment explanation
Indices: 6225314--6225365 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
6225304 TTAAAATATT
* *
6225314 ATTTGTTTTATTTTAATCACTTTTA
1 ATTTGTTTTAATTTAATCA-TTCTA
*
6225339 ATTTTTTTTAATTTAATCATTCTA
1 ATTTGTTTTAATTTAATCATTCTA
6225363 ATT
1 ATT
6225366 AAAATAATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 7 0.29
25 17 0.71
ACGTcount: A:0.27, C:0.08, G:0.02, T:0.63
Consensus pattern (24 bp):
ATTTGTTTTAATTTAATCATTCTA
Found at i:6235834 original size:23 final size:24
Alignment explanation
Indices: 6235799--6235843 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
6235789 TATTTGAATG
* * *
6235799 AAAATTATATATATGTATATTTTA
1 AAAACTATATATAAGTAAATTTTA
6235823 AAAACTAT-TATAAGTAAATTT
1 AAAACTATATATAAGTAAATTT
6235844 GTATACTTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 11 0.61
24 7 0.39
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.44
Consensus pattern (24 bp):
AAAACTATATATAAGTAAATTTTA
Found at i:6236540 original size:17 final size:17
Alignment explanation
Indices: 6236520--6236552 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
6236510 TTTTTAAATA
6236520 ATAATAATTTTT-TTAAG
1 ATAAT-ATTTTTATTAAG
6236537 ATAATATTTTTATTAA
1 ATAATATTTTTATTAA
6236553 AATATTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (17 bp):
ATAATATTTTTATTAAG
Found at i:6242577 original size:18 final size:18
Alignment explanation
Indices: 6242556--6242597 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
6242546 TTATATTCAC
*
6242556 ACTTTTTTTTTCAG-TTTT
1 ACTTTTTGTTT-AGTTTTT
*
6242574 ACTTTATGTTTAGTTTTT
1 ACTTTTTGTTTAGTTTTT
6242592 ACTTTT
1 ACTTTT
6242598 AAAAATAATG
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 2 0.10
18 18 0.90
ACGTcount: A:0.14, C:0.10, G:0.07, T:0.69
Consensus pattern (18 bp):
ACTTTTTGTTTAGTTTTT
Found at i:6252714 original size:22 final size:22
Alignment explanation
Indices: 6252694--6252738 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
6252684 AAATAATAAC
6252694 TAAAATATTATTATTTTATAAAA
1 TAAAATA-TATTATTTTATAAAA
*
6252717 TAAATTATATTATTTTA-AAAA
1 TAAAATATATTATTTTATAAAA
6252738 T
1 T
6252739 GTTTTTAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.24
22 10 0.48
23 6 0.29
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
TAAAATATATTATTTTATAAAA
Found at i:6253581 original size:7 final size:7
Alignment explanation
Indices: 6253569--6253599 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
6253559 TTTATTTCCC
6253569 TGCCCAG
1 TGCCCAG
6253576 TGCCCAG
1 TGCCCAG
6253583 TGCCCAG
1 TGCCCAG
6253590 TGCCCAG
1 TGCCCAG
6253597 TGC
1 TGC
6253600 AATATAGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.13, C:0.42, G:0.29, T:0.16
Consensus pattern (7 bp):
TGCCCAG
Found at i:6257870 original size:27 final size:26
Alignment explanation
Indices: 6257840--6257907 Score: 93
Period size: 27 Copynumber: 2.6 Consensus size: 26
6257830 CAAATGCCGA
6257840 GTGGAGGTGGGGGTGAAGGTGGAGGAG
1 GTGGAGGTGGGGGTGAAGGTGGAGG-G
*
6257867 GTGGTGGTGGGGGTGAAGGTGGAGGG
1 GTGGAGGTGGGGGTGAAGGTGGAGGG
*
6257893 GAGGAGG-GGGAGGTG
1 GTGGAGGTGGG-GGTG
6257908 GAGGAATAGG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.08
26 10 0.27
27 24 0.65
ACGTcount: A:0.16, C:0.00, G:0.69, T:0.15
Consensus pattern (26 bp):
GTGGAGGTGGGGGTGAAGGTGGAGGG
Found at i:6257920 original size:21 final size:21
Alignment explanation
Indices: 6257894--6257933 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
6257884 GGTGGAGGGG
*
6257894 AGGAGGGGGAGGTGGAGGAAT
1 AGGAGGGGCAGGTGGAGGAAT
*
6257915 AGGAGGGGCAGGTGTAGGA
1 AGGAGGGGCAGGTGGAGGA
6257934 GGAGGTATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.03, G:0.60, T:0.10
Consensus pattern (21 bp):
AGGAGGGGCAGGTGGAGGAAT
Found at i:6273008 original size:16 final size:16
Alignment explanation
Indices: 6272987--6273035 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 16
6272977 TTCGCTGTAT
*
6272987 TGGAATAAAGGCGTAA
1 TGGAATAGAGGCGTAA
* *
6273003 TGGAATAGAGACATAA
1 TGGAATAGAGGCGTAA
*
6273019 TGGAATAGATGCGTAA
1 TGGAATAGAGGCGTAA
6273035 T
1 T
6273036 AGAAAATCAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.43, C:0.06, G:0.29, T:0.22
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:6273290 original size:18 final size:17
Alignment explanation
Indices: 6273268--6273302 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6273258 TAATTATTAA
*
6273268 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
6273286 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
6273303 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:6273422 original size:26 final size:26
Alignment explanation
Indices: 6273393--6273507 Score: 95
Period size: 26 Copynumber: 4.3 Consensus size: 26
6273383 TTAATCATAT
*
6273393 TTTAACATAATTATTATTAAATATAA
1 TTTAATATAATTATTATTAAATATAA
* * * * *
6273419 TTTAATAAAATATATAAATTTACTAAAA
1 TTTAATATAAT-TAT-TATTAAATATAA
* * * *
6273447 TCATAATATATAATACTATAAAATATAA
1 T-TTAATATA-ATTATTATTAAATATAA
*
6273475 TTTAAAATAATTATTATTAAATATAA
1 TTTAATATAATTATTATTAAATATAA
6273501 TTTAATA
1 TTTAATA
6273508 AAAATATATA
Statistics
Matches: 64, Mismatches: 21, Indels: 8
0.69 0.23 0.09
Matches are distributed among these distances:
26 29 0.45
27 9 0.14
28 17 0.27
29 8 0.12
30 1 0.02
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (26 bp):
TTTAATATAATTATTATTAAATATAA
Found at i:6273440 original size:18 final size:17
Alignment explanation
Indices: 6273413--6273529 Score: 59
Period size: 18 Copynumber: 7.0 Consensus size: 17
6273403 TTATTATTAA
6273413 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
*
6273430 ATATAAATTTACTAAAAT
1 ATAT-AATTTAATAAAAT
* * *
6273448 -CATAATAT-ATAATACT
1 ATATAATTTAATAA-AAT
* *
6273464 ATAAAATATAATTTAAAAT
1 ATATAATTTAA--TAAAAT
* *
6273483 A-ATTA-TT-AT-TAA-
1 ATATAATTTAATAAAAT
6273495 ATATAATTTAATAAAAAT
1 ATATAATTTAAT-AAAAT
*
6273513 ATATAATTTGATAAAAT
1 ATATAATTTAATAAAAT
6273530 TCTTAGTATT
Statistics
Matches: 73, Mismatches: 15, Indels: 24
0.65 0.13 0.21
Matches are distributed among these distances:
12 1 0.01
13 5 0.07
14 3 0.04
15 5 0.07
16 7 0.10
17 20 0.27
18 26 0.36
19 3 0.04
20 3 0.04
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:6273477 original size:145 final size:145
Alignment explanation
Indices: 6273189--6273478 Score: 435
Period size: 145 Copynumber: 2.0 Consensus size: 145
6273179 ATGATTATTG
* *
6273189 TTATTGTTATTAAATTTTAATAAGATTATTAATATCAGTAATAAATAATTTAATCATATTTTAAC
1 TTATTGTTATTAAATTTTAATAAGATTATTAATATAAATAATAAATAATTTAATCATATTTTAAC
* *
6273254 ATAATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATAT
66 ATAATAATTATTAAATATAATTTAATTAAAATATATAATTTAATAAAATTCATAATAATCAATAT
***
6273319 TGTTATATGAATTTA
131 TAAAATATGAATTTA
6273334 TTATTGTTATTAAATTTTAATAAGATTATTAATATAAATAATAAATAATTTAATCATATTTTAAC
1 TTATTGTTATTAAATTTTAATAAGATTATTAATATAAATAATAAATAATTTAATCATATTTTAAC
* *
6273399 ATAATTATTATTAAATATAATTTAA-TAAAATATATAAATTTACTAAAA-TCATAATATAT-AAT
66 ATAATAATTATTAAATATAATTTAATTAAAATATAT-AATTTAATAAAATTCATAATA-ATCAAT
6273461 ACTATAAAATAT-AATTTA
129 A-T-TAAAATATGAATTTA
6273479 AAATAATTAT
Statistics
Matches: 132, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
144 21 0.16
145 106 0.80
146 5 0.04
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (145 bp):
TTATTGTTATTAAATTTTAATAAGATTATTAATATAAATAATAAATAATTTAATCATATTTTAAC
ATAATAATTATTAAATATAATTTAATTAAAATATATAATTTAATAAAATTCATAATAATCAATAT
TAAAATATGAATTTA
Found at i:6273588 original size:61 final size:61
Alignment explanation
Indices: 6273429--6273616 Score: 201
Period size: 59 Copynumber: 3.1 Consensus size: 61
6273419 TTTAATAAAA
6273429 TATATAAATTTACTAAAATCATAATATATAATACTATAAAA-TATAATTTAAAATAATTAT
1 TATATAAATTTACTAAAATCATAATATATAATACTATAAAATTATAATTTAAAATAATTAT
* * ** * * * * * *
6273489 TAT-TAAATATAATTTAATAAAAATATATAAT-TTGATAAAATTCTTAGTATT-AAAT-ATTCT
1 TATATAAATTTACTAAAATCATAATATATAATACT-ATAAAATT-ATAAT-TTAAAATAATTAT
*
6273549 TATATGAATTTACTAAAATCATAATATATAATACTATAAAA-TATAATTTAAAATAATTAT
1 TATATAAATTTACTAAAATCATAATATATAATACTATAAAATTATAATTTAAAATAATTAT
6273609 TAT-TAAAT
1 TATATAAAT
6273617 ATAATTTATA
Statistics
Matches: 98, Mismatches: 22, Indels: 17
0.72 0.16 0.12
Matches are distributed among these distances:
58 3 0.03
59 39 0.40
60 19 0.19
61 34 0.35
62 3 0.03
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (61 bp):
TATATAAATTTACTAAAATCATAATATATAATACTATAAAATTATAATTTAAAATAATTAT
Found at i:6280854 original size:24 final size:24
Alignment explanation
Indices: 6280826--6280877 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
6280816 TTTTTAGAAG
*
6280826 ATTTAATATTTA-TAAGTATAATAT
1 ATTTAATATTTATTAA-CATAATAT
*
6280850 ATTTAATGTTTATTAACATAATAT
1 ATTTAATATTTATTAACATAATAT
6280874 ATTT
1 ATTT
6280878 GACTTTGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 22 0.88
25 3 0.12
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (24 bp):
ATTTAATATTTATTAACATAATAT
Found at i:6281170 original size:18 final size:18
Alignment explanation
Indices: 6281147--6281182 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
6281137 ATCGTCAACA
*
6281147 AAAGACTTTTCTTGTGTC
1 AAAGACTTTTCTTCTGTC
6281165 AAAGACTTTTCTTCTGTC
1 AAAGACTTTTCTTCTGTC
6281183 TCTGTTCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.19, G:0.14, T:0.44
Consensus pattern (18 bp):
AAAGACTTTTCTTCTGTC
Found at i:6281464 original size:16 final size:17
Alignment explanation
Indices: 6281436--6281467 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
6281426 CTTTTTTAAT
6281436 TAATTTTTATTTAAAAA
1 TAATTTTTATTTAAAAA
6281453 TAATTTTT-TTTAAAA
1 TAATTTTTATTTAAAA
6281468 CATACAATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TAATTTTTATTTAAAAA
Found at i:6281713 original size:28 final size:30
Alignment explanation
Indices: 6281681--6281737 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
6281671 AGAGATTTAA
*
6281681 ATAATT-ATATAATTATTATT-TAACATAT
1 ATAATTAACATAATTATTATTATAACATAT
*
6281709 ATAATTAACATAATTATTTTTATAACATA
1 ATAATTAACATAATTATTATTATAACATA
6281738 AAAAAATTCG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 6 0.24
29 12 0.48
30 7 0.28
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (30 bp):
ATAATTAACATAATTATTATTATAACATAT
Found at i:6282009 original size:4 final size:4
Alignment explanation
Indices: 6282000--6282027 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
6281990 TAAGAGGGAT
6282000 TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG
6282028 GATGGGAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:6302477 original size:13 final size:14
Alignment explanation
Indices: 6302459--6302491 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
6302449 CTCATTACTT
*
6302459 TTATTTTTAA-TTA
1 TTATTTTTAACATA
6302472 TTATTTTTAACATA
1 TTATTTTTAACATA
6302486 TTATTT
1 TTATTT
6302492 CCTCTAGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (14 bp):
TTATTTTTAACATA
Found at i:6303686 original size:23 final size:21
Alignment explanation
Indices: 6303645--6303686 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
6303635 TAATATTAAA
*
6303645 ATAATAAAATTACATTTTACT
1 ATAATAAAATTACAATTTACT
6303666 ATAATAAAAATATACAATTTA
1 ATAAT-AAAAT-TACAATTTA
6303687 ATTTTTATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 5 0.28
23 8 0.44
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (21 bp):
ATAATAAAATTACAATTTACT
Found at i:6303688 original size:81 final size:81
Alignment explanation
Indices: 6303521--6303690 Score: 179
Period size: 81 Copynumber: 2.1 Consensus size: 81
6303511 GTAATAAATT
* * * * *
6303521 TTTAATTTATACTTTTTATAATTTATAAAATTTTAAATTAATAATGATAAAATTACACTTTAGTA
1 TTTAATTTATAATTTTTATAAATTATAAAATTATAAATTAATAATAATAAAATTACACTTTACTA
*
6303586 TTTAAAATAATCAAAA
66 TTAAAAATAATCAAAA
* *
6303602 ATTAATTTA-AATTTTTA-AAATTATAAAGATATATAATATTAA-AATAATAAAATTACATTTTA
1 TTTAATTTATAATTTTTATAAATTATAAA-AT-TATAA-ATTAATAATAATAAAATTACACTTTA
*
6303664 CTATAATAAAAAT-AT-ACAA
63 CTAT--TAAAAATAATCAAAA
6303683 TTTAATTT
1 TTTAATTT
6303691 TTATCAAAAA
Statistics
Matches: 74, Mismatches: 10, Indels: 10
0.79 0.11 0.11
Matches are distributed among these distances:
79 9 0.12
80 9 0.12
81 43 0.58
82 7 0.09
83 6 0.08
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (81 bp):
TTTAATTTATAATTTTTATAAATTATAAAATTATAAATTAATAATAATAAAATTACACTTTACTA
TTAAAAATAATCAAAA
Found at i:6306196 original size:11 final size:11
Alignment explanation
Indices: 6306180--6306219 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
6306170 GGTTTTCTCT
6306180 CTATTTTGCTA
1 CTATTTTGCTA
* *
6306191 CCATTTTACTA
1 CTATTTTGCTA
*
6306202 CTATGTTGCTA
1 CTATTTTGCTA
6306213 CTATTTT
1 CTATTTT
6306220 ATTTTTATTG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.20, C:0.20, G:0.07, T:0.53
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:6306291 original size:30 final size:30
Alignment explanation
Indices: 6306257--6306318 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
6306247 ACTTATTTTA
*
6306257 TTGTTAATTTTGTTACTATTTTAAAGACAT
1 TTGTTAATTTTGCTACTATTTTAAAGACAT
* *
6306287 TTGTTAATTTTGCTATTATTTTAAAGTCAT
1 TTGTTAATTTTGCTACTATTTTAAAGACAT
6306317 TT
1 TT
6306319 ACTTGTTAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.27, C:0.06, G:0.10, T:0.56
Consensus pattern (30 bp):
TTGTTAATTTTGCTACTATTTTAAAGACAT
Found at i:6318037 original size:6 final size:6
Alignment explanation
Indices: 6318026--6318050 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
6318016 ATGTCCACAG
6318026 TTCCAT TTCCAT TTCCAT TTCCAT T
1 TTCCAT TTCCAT TTCCAT TTCCAT T
6318051 AAAGACCACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.32, G:0.00, T:0.52
Consensus pattern (6 bp):
TTCCAT
Found at i:6329938 original size:21 final size:19
Alignment explanation
Indices: 6329884--6329937 Score: 54
Period size: 21 Copynumber: 2.7 Consensus size: 19
6329874 CTTGTAATGT
*
6329884 TATTTTTTATTTTAAAATA
1 TATTTTTAATTTTAAAATA
* *
6329903 AATTTAATAAATTTTAAATATA
1 TATTT--TTAATTTTAAA-ATA
6329925 TATTTTTAATTTT
1 TATTTTTAATTTT
6329938 TTTCATGTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
19 4 0.15
20 7 0.26
21 9 0.33
22 7 0.26
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TATTTTTAATTTTAAAATA
Found at i:6330415 original size:29 final size:30
Alignment explanation
Indices: 6330383--6330456 Score: 73
Period size: 29 Copynumber: 2.5 Consensus size: 30
6330373 TGTATAGTTT
*
6330383 AATCAAAATCAAAGTTTTATATATAT-A-TG
1 AATC-AAATCAAAGTTTCATATATATAATTG
*
6330412 AATCGCAATTCAAA-TTTCATATATATAATTG
1 AAT--CAAATCAAAGTTTCATATATATAATTG
*
6330443 CATCAAATCAAAGT
1 AATCAAATCAAAGT
6330457 AAATATTAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
29 22 0.61
30 9 0.25
31 5 0.14
ACGTcount: A:0.46, C:0.12, G:0.07, T:0.35
Consensus pattern (30 bp):
AATCAAATCAAAGTTTCATATATATAATTG
Found at i:6337402 original size:5 final size:5
Alignment explanation
Indices: 6337394--6337423 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
6337384 TAATTTAATT
6337394 TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA
6337424 AGTTCAGTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:6342276 original size:6 final size:6
Alignment explanation
Indices: 6342265--6342289 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
6342255 TATACTCCAA
6342265 TAATAT TAATAT TAATAT TAATAT T
1 TAATAT TAATAT TAATAT TAATAT T
6342290 GTTTTTTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TAATAT
Found at i:6352052 original size:16 final size:15
Alignment explanation
Indices: 6352023--6352053 Score: 53
Period size: 15 Copynumber: 2.0 Consensus size: 15
6352013 CCCTTTTCTT
6352023 TGAAAATAGAATGAA
1 TGAAAATAGAATGAA
6352038 TGAAAATATGAATGAA
1 TGAAAATA-GAATGAA
6352054 GGGAAAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.58, C:0.00, G:0.19, T:0.23
Consensus pattern (15 bp):
TGAAAATAGAATGAA
Found at i:6354855 original size:27 final size:27
Alignment explanation
Indices: 6354823--6354896 Score: 112
Period size: 27 Copynumber: 2.7 Consensus size: 27
6354813 AATCACATTG
*
6354823 GCGGCACCAAAGGTGCCAAAGAGATTA
1 GCGGCACCAATGGTGCCAAAGAGATTA
* * *
6354850 GTGGCACCAATGGTGCCAAAGTGATTG
1 GCGGCACCAATGGTGCCAAAGAGATTA
6354877 GCGGCACCAATGGTGCCAAA
1 GCGGCACCAATGGTGCCAAA
6354897 TGACTAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.31, C:0.23, G:0.31, T:0.15
Consensus pattern (27 bp):
GCGGCACCAATGGTGCCAAAGAGATTA
Found at i:6354998 original size:19 final size:19
Alignment explanation
Indices: 6354971--6355040 Score: 97
Period size: 19 Copynumber: 3.7 Consensus size: 19
6354961 TCAACTCATT
*
6354971 TTTTTATTTAATAACTCTA
1 TTTTAATTTAATAACTCTA
*
6354990 TTTTAATTTAATAA-ACTA
1 TTTTAATTTAATAACTCTA
* *
6355008 TTCTCATTTAATAACTCTA
1 TTTTAATTTAATAACTCTA
6355027 TTTTAATTTAATAA
1 TTTTAATTTAATAA
6355041 ACTATTAAGT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
18 15 0.35
19 28 0.65
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTTAATTTAATAACTCTA
Found at i:6355021 original size:37 final size:37
Alignment explanation
Indices: 6354976--6355046 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
6354966 TCATTTTTTT
6354976 ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
1 ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
6355013 ATTTAATAACTCTATTTTAATTTAATAAACTATT
1 ATTTAATAACTCTATTTTAATTTAATAAACTATT
6355047 AAGTATTTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.49
Consensus pattern (37 bp):
ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
Found at i:6355287 original size:18 final size:19
Alignment explanation
Indices: 6355250--6355288 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
6355240 TCAACTCATT
* *
6355250 TTTTTATTTAATAACTCTA
1 TTTTAATTTAATAACACTA
6355269 TTTTAATTTAATAA-ACTA
1 TTTTAATTTAATAACACTA
6355287 TT
1 TT
6355289 ACGTAATACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (19 bp):
TTTTAATTTAATAACACTA
Found at i:6355501 original size:254 final size:254
Alignment explanation
Indices: 6355052--6355542 Score: 903
Period size: 254 Copynumber: 1.9 Consensus size: 254
6355042 CTATTAAGTA
*
6355052 TTTAAATTAAAATAAAGTTATTAAATGAGAGAATTCTAATTAAGTGACCATTTGCATTTTTAAGG
1 TTTAAATTAAAATAAAGTTATTAAATGAGAGAATTCTAATTAAGTGACCATTTGCAGTTTTAAGG
* *
6355117 ACTTGATATGCAAATTTACTATTTTGAATTTTGAAAGTGAATTGCTGCTGTGCGCACTAAAATTA
66 ACTTGACATGCAAATTTACTATTTTGAATTTTGAAAGTAAATTGCTGCTGTGCGCACTAAAATTA
6355182 AAATGTGGCTAATTACCTTCTAAGCCCTCCTTATTTATTATTTTCTTTTTATTCCCATTCAACTC
131 AAATGTGGCTAATTACCTTCTAAGCCCTCCTTATTTATTATTTTCTTTTTATTCCCATTCAACTC
6355247 ATTTTTTTATTTAATAACTCTATTTTAATTTAATAAACTATTACGTAATACTTAATTTT
196 ATTTTTTTATTTAATAACTCTATTTTAATTTAATAAACTATTACGTAATACTTAATTTT
*
6355306 TTTAAATTAAAATAGAGTTATTAAATGAGAGAATTCTAATTAAGTGACCATTTGCAGTTTTAAGG
1 TTTAAATTAAAATAAAGTTATTAAATGAGAGAATTCTAATTAAGTGACCATTTGCAGTTTTAAGG
*
6355371 ACTTGACATGCAAATTTACTATTTTGAATTTTGAAAGTAAATTGCTGCTGTGCGCACTAAAATTG
66 ACTTGACATGCAAATTTACTATTTTGAATTTTGAAAGTAAATTGCTGCTGTGCGCACTAAAATTA
* *
6355436 AAAT-TGGGCTAATTGCCTTCTAAGCCCTCCTTATTTATTATTTTCTTTTTATTCCCCTTCAACT
131 AAATGT-GGCTAATTACCTTCTAAGCCCTCCTTATTTATTATTTTCTTTTTATTCCCATTCAACT
6355500 CATTTTTTTATTTAATAACTCTATTTTAATTTAATAAACTATT
195 CATTTTTTTATTTAATAACTCTATTTTAATTTAATAAACTATT
6355543 CTCATTTAAT
Statistics
Matches: 229, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
253 1 0.00
254 228 1.00
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.44
Consensus pattern (254 bp):
TTTAAATTAAAATAAAGTTATTAAATGAGAGAATTCTAATTAAGTGACCATTTGCAGTTTTAAGG
ACTTGACATGCAAATTTACTATTTTGAATTTTGAAAGTAAATTGCTGCTGTGCGCACTAAAATTA
AAATGTGGCTAATTACCTTCTAAGCCCTCCTTATTTATTATTTTCTTTTTATTCCCATTCAACTC
ATTTTTTTATTTAATAACTCTATTTTAATTTAATAAACTATTACGTAATACTTAATTTT
Found at i:6355541 original size:18 final size:19
Alignment explanation
Indices: 6355504--6355564 Score: 79
Period size: 19 Copynumber: 3.3 Consensus size: 19
6355494 TCAACTCATT
*
6355504 TTTTTATTTAATAACTCTA
1 TTTTAATTTAATAACTCTA
*
6355523 TTTTAATTTAATAA-ACTA
1 TTTTAATTTAATAACTCTA
* *
6355541 TTCTCATTTAATAACTCTA
1 TTTTAATTTAATAACTCTA
6355560 TTTTA
1 TTTTA
6355565 GTTATTAAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
18 15 0.44
19 19 0.56
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.54
Consensus pattern (19 bp):
TTTTAATTTAATAACTCTA
Found at i:6355614 original size:37 final size:37
Alignment explanation
Indices: 6355564--6355645 Score: 164
Period size: 37 Copynumber: 2.2 Consensus size: 37
6355554 ACTCTATTTT
6355564 AGTTATTAAATGAGAATAGTTTATTAAATTAAAATAG
1 AGTTATTAAATGAGAATAGTTTATTAAATTAAAATAG
6355601 AGTTATTAAATGAGAATAGTTTATTAAATTAAAATAG
1 AGTTATTAAATGAGAATAGTTTATTAAATTAAAATAG
6355638 AGTTATTA
1 AGTTATTA
6355646 CTTAATTAGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.48, C:0.00, G:0.13, T:0.39
Consensus pattern (37 bp):
AGTTATTAAATGAGAATAGTTTATTAAATTAAAATAG
Done.