Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 162 of 240
Found at i:50808342 original size:96 final size:96
Alignment explanation
Indices: 50808169--50808343 Score: 217
Period size: 96 Copynumber: 1.8 Consensus size: 96
50808159 CGCACGACTG
* * * ** *
50808169 TGTGCCAGGCCGTGTGAGACACTGACTTGAGTCACACGATTATATGTAAGGCAGTGTGTTAGACC
1 TGTGCCAGGCCGTGTGAGACACTGACTTGAGCCACACGATCATATGCAAGGCAGTGTGACAAACC
*
50808234 GTGTAACTCACTAACTTGAGTTACTCGGTCA
66 GTGTAACGCACTAACTTGAGTTACTCGGTCA
* * * *
50808265 TGTGCCAGGCCGTGTGAGGCACTGACTTGAGCCACAC-ATCCATGTGCCAGGCTGTGTGACAAAC
1 TGTGCCAGGCCGTGTGAGACACTGACTTGAGCCACACGAT-CATATGCAAGGCAGTGTGACAAAC
* *
50808329 CGTGTGAGGCACTAA
65 CGTGTAACGCACTAA
50808344 TATGAGCCAC
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
95 2 0.03
96 63 0.97
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (96 bp):
TGTGCCAGGCCGTGTGAGACACTGACTTGAGCCACACGATCATATGCAAGGCAGTGTGACAAACC
GTGTAACGCACTAACTTGAGTTACTCGGTCA
Found at i:50808363 original size:96 final size:96
Alignment explanation
Indices: 50808169--50808363 Score: 205
Period size: 96 Copynumber: 2.0 Consensus size: 96
50808159 CGCACGACTG
* * * ** *
50808169 TGTGCCAGGCCGTGTGAGACACTGACTTGAGTCACACGATTATATGTAAGGCAGTGTGTTAGACC
1 TGTGCCAGGCCGTGTGAGACACTGACTTGAGCCACACGATCATATGCAAGGCAGTGTGACAAACC
* ** * *
50808234 GTGTAACTCACTAACTTGAGTTACTCGGTCA
66 GTGTAACGCACTAACTTGAGCCACACGGCCA
* * * *
50808265 TGTGCCAGGCCGTGTGAGGCACTGACTTGAGCCACAC-ATCCATGTGCCAGGCTGTGTGACAAAC
1 TGTGCCAGGCCGTGTGAGACACTGACTTGAGCCACACGAT-CATATGCAAGGCAGTGTGACAAAC
* *
50808329 CGTGTGAGGCACTAA-TATGAGCCACACGGCCA
65 CGTGTAACGCACTAACT-TGAGCCACACGGCCA
50808361 TGT
1 TGT
50808364 AGGCCACATG
Statistics
Matches: 80, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
95 3 0.04
96 77 0.96
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (96 bp):
TGTGCCAGGCCGTGTGAGACACTGACTTGAGCCACACGATCATATGCAAGGCAGTGTGACAAACC
GTGTAACGCACTAACTTGAGCCACACGGCCA
Found at i:50813222 original size:21 final size:20
Alignment explanation
Indices: 50813182--50813223 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
50813172 TCCAGCGTTG
50813182 ATTTTGTAAGTGTTCTAAAA
1 ATTTTGTAAGTGTTCTAAAA
*
50813202 ATTTTGATAAGT-TTTTAAAA
1 ATTTTG-TAAGTGTTCTAAAA
50813222 AT
1 AT
50813224 ATGAGTAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (20 bp):
ATTTTGTAAGTGTTCTAAAA
Found at i:50823429 original size:22 final size:22
Alignment explanation
Indices: 50823404--50823459 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
50823394 CGCTTTAGCT
50823404 CTTACTGTTCTACACTTCGGTG
1 CTTACTGTTCTACACTTCGGTG
* *
50823426 CTTAGTGATT-TGCACTTCGGTG
1 CTTACTG-TTCTACACTTCGGTG
50823448 CTTACTGTTCTA
1 CTTACTGTTCTA
50823460 TTAGTGCACT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 2 0.07
22 24 0.86
23 2 0.07
ACGTcount: A:0.14, C:0.23, G:0.20, T:0.43
Consensus pattern (22 bp):
CTTACTGTTCTACACTTCGGTG
Found at i:50825037 original size:31 final size:30
Alignment explanation
Indices: 50824981--50825044 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 30
50824971 TTAATGACAC
*
50824981 ATAAAATATTTTAAAAAATTAAATATACTA
1 ATAAAATATTTTAAAAAATTAAATATAATA
* * *
50825011 ATAAATTATATTTAAATAATTTAATATAATA
1 ATAAAATAT-TTTAAAAAATTAAATATAATA
50825042 ATA
1 ATA
50825045 CATGAAATAC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 8 0.28
31 21 0.72
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (30 bp):
ATAAAATATTTTAAAAAATTAAATATAATA
Found at i:50825070 original size:33 final size:33
Alignment explanation
Indices: 50824979--50825086 Score: 103
Period size: 33 Copynumber: 3.3 Consensus size: 33
50824969 AATTAATGAC
* * *
50824979 ACATAAAATATTTTAAAAAATTAAATATACTAAT
1 ACATAAAATA-CTTAAATAATTAAATATAATAAT
** * *
50825013 A-A-ATTATATTTAAATAATTTAATATAATAAT
1 ACATAAAATACTTAAATAATTAAATATAATAAT
* *
50825044 ACATGAAATACTTAAATACTTAAATATAATAAT
1 ACATAAAATACTTAAATAATTAAATATAATAAT
*
50825077 GCATAAAATA
1 ACATAAAATA
50825087 TAAATTAATC
Statistics
Matches: 59, Mismatches: 13, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
31 21 0.36
32 5 0.08
33 32 0.54
34 1 0.02
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.36
Consensus pattern (33 bp):
ACATAAAATACTTAAATAATTAAATATAATAAT
Found at i:50826442 original size:44 final size:44
Alignment explanation
Indices: 50826393--50826476 Score: 159
Period size: 44 Copynumber: 1.9 Consensus size: 44
50826383 TTGAAATAAA
*
50826393 ATAGAAGTTGTGATAATTATACATTTAAAAATAATTATAACTTG
1 ATAGAAGTTGTGATAATTACACATTTAAAAATAATTATAACTTG
50826437 ATAGAAGTTGTGATAATTACACATTTAAAAATAATTATAA
1 ATAGAAGTTGTGATAATTACACATTTAAAAATAATTATAA
50826477 TTTAAATTAC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.48, C:0.05, G:0.11, T:0.37
Consensus pattern (44 bp):
ATAGAAGTTGTGATAATTACACATTTAAAAATAATTATAACTTG
Found at i:50826472 original size:18 final size:17
Alignment explanation
Indices: 50826449--50826482 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
50826439 AGAAGTTGTG
50826449 ATAATTACACATTTAAAA
1 ATAATTACA-ATTTAAAA
*
50826467 ATAATTATAATTTAAA
1 ATAATTACAATTTAAA
50826483 TTACAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (17 bp):
ATAATTACAATTTAAAA
Found at i:50829371 original size:14 final size:14
Alignment explanation
Indices: 50829352--50829416 Score: 60
Period size: 14 Copynumber: 4.4 Consensus size: 14
50829342 TTGGCAAAGC
50829352 AAGAAAGAAGAGAA
1 AAGAAAGAAGAGAA
50829366 AAGAAAGAAGAAGAA
1 AAGAAAGAAG-AGAA
* *
50829381 AAGGAAAATAACAGAA
1 AA-G-AAAGAAGAGAA
*
50829397 ACATAAAGAA-AGAA
1 A-AGAAAGAAGAGAA
50829411 AAGAAA
1 AAGAAA
50829417 AATTTGCAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
13 4 0.10
14 15 0.36
15 11 0.26
16 6 0.14
17 6 0.14
ACGTcount: A:0.72, C:0.03, G:0.22, T:0.03
Consensus pattern (14 bp):
AAGAAAGAAGAGAA
Found at i:50835969 original size:126 final size:126
Alignment explanation
Indices: 50835825--50836079 Score: 501
Period size: 126 Copynumber: 2.0 Consensus size: 126
50835815 TTTCTCTTTA
*
50835825 TTTTCGAAAAAAAATCCTTGCTTTTTGCCTTAGTCAACTCTCAAACTCGCGCCTCACCAAAATTT
1 TTTTCCAAAAAAAATCCTTGCTTTTTGCCTTAGTCAACTCTCAAACTCGCGCCTCACCAAAATTT
50835890 CCTTAATTTTCAGCCTTAGCCACTCATCCACCTTAAGAGAATTTAATTTTCTCTTAATTTT
66 CCTTAATTTTCAGCCTTAGCCACTCATCCACCTTAAGAGAATTTAATTTTCTCTTAATTTT
50835951 TTTTCCAAAAAAAATCCTTGCTTTTTGCCTTAGTCAACTCTCAAACTCGCGCCTCACCAAAATTT
1 TTTTCCAAAAAAAATCCTTGCTTTTTGCCTTAGTCAACTCTCAAACTCGCGCCTCACCAAAATTT
50836016 CCTTAATTTTCAGCCTTAGCCACTCATCCACCTTAAGAGAATTTAATTTTCTCTTAATTTT
66 CCTTAATTTTCAGCCTTAGCCACTCATCCACCTTAAGAGAATTTAATTTTCTCTTAATTTT
50836077 TTT
1 TTT
50836080 ATATAAAATC
Statistics
Matches: 128, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
126 128 1.00
ACGTcount: A:0.27, C:0.26, G:0.07, T:0.39
Consensus pattern (126 bp):
TTTTCCAAAAAAAATCCTTGCTTTTTGCCTTAGTCAACTCTCAAACTCGCGCCTCACCAAAATTT
CCTTAATTTTCAGCCTTAGCCACTCATCCACCTTAAGAGAATTTAATTTTCTCTTAATTTT
Found at i:50837405 original size:20 final size:20
Alignment explanation
Indices: 50837382--50837420 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
50837372 AGATGAAAAC
50837382 AACATTTGAATTATGATTTA
1 AACATTTGAATTATGATTTA
* *
50837402 AACATTTGATTTATTATTT
1 AACATTTGAATTATGATTT
50837421 TTAGGAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.05, G:0.08, T:0.51
Consensus pattern (20 bp):
AACATTTGAATTATGATTTA
Found at i:50842164 original size:12 final size:12
Alignment explanation
Indices: 50842146--50842175 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
50842136 TATCGCAAAG
50842146 AAAATAGAAATA
1 AAAATAGAAATA
*
50842158 GAAATAGAAATA
1 AAAATAGAAATA
50842170 AAAATA
1 AAAATA
50842176 AAGAACACAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.73, C:0.00, G:0.10, T:0.17
Consensus pattern (12 bp):
AAAATAGAAATA
Found at i:50847232 original size:15 final size:15
Alignment explanation
Indices: 50847212--50847254 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
50847202 ATGATTTTAA
*
50847212 TGGAATGTAATTTTT
1 TGGAATGTAATTGTT
*
50847227 TGGAATGTAGTTGTT
1 TGGAATGTAATTGTT
* *
50847242 AGGAATGTGATTG
1 TGGAATGTAATTG
50847255 CTTGAAAAGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.30, T:0.44
Consensus pattern (15 bp):
TGGAATGTAATTGTT
Found at i:50848283 original size:17 final size:17
Alignment explanation
Indices: 50848263--50848300 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
50848253 TATAAAATAT
*
50848263 AATTTATAA-TAATTATA
1 AATTTAAAACTAATTA-A
50848280 AATTTAAAACTAATTAA
1 AATTTAAAACTAATTAA
50848297 AATT
1 AATT
50848301 AATTAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (17 bp):
AATTTAAAACTAATTAA
Found at i:50853590 original size:16 final size:16
Alignment explanation
Indices: 50853554--50853622 Score: 77
Period size: 16 Copynumber: 4.3 Consensus size: 16
50853544 TTTGAGTACC
**
50853554 ATAATAGAATAGTCTT
1 ATAATAGAATAGAGTT
*
50853570 GTAATTAG-ATAGAGTT
1 ATAA-TAGAATAGAGTT
*
50853586 ATAATAGAATAAAGTT
1 ATAATAGAATAGAGTT
*
50853602 ATAATAGAATAGAGCT
1 ATAATAGAATAGAGTT
50853618 ATAAT
1 ATAAT
50853623 CAGTAATTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
15 3 0.07
16 38 0.86
17 3 0.07
ACGTcount: A:0.48, C:0.03, G:0.16, T:0.33
Consensus pattern (16 bp):
ATAATAGAATAGAGTT
Found at i:50853874 original size:23 final size:21
Alignment explanation
Indices: 50853843--50853885 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
50853833 CATTATATGA
50853843 ATTAAAAAATCATAATATATAAT
1 ATTAAAAAA--ATAATATATAAT
*
50853866 ATTATAAAAATAATATATAA
1 ATTAAAAAAATAATATATAA
50853886 CCTACTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
23 8 0.42
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
ATTAAAAAAATAATATATAAT
Found at i:50863528 original size:7 final size:7
Alignment explanation
Indices: 50863503--50863566 Score: 51
Period size: 7 Copynumber: 9.1 Consensus size: 7
50863493 GAGAGCTAAA
*
50863503 AGAGTTG
1 AGAGATG
50863510 AGAGA-G
1 AGAGATG
50863516 AG-GATG
1 AGAGATG
50863522 AGAGATG
1 AGAGATG
50863529 AGAGGGATG
1 AGA--GATG
*
50863538 AGGGATG
1 AGAGATG
*
50863545 AGGGATG
1 AGAGATG
*
50863552 AGGGATG
1 AGAGATG
*
50863559 AGGGATG
1 AGAGATG
50863566 A
1 A
50863567 TTGAAAAAGT
Statistics
Matches: 51, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
5 2 0.04
6 6 0.12
7 37 0.73
9 6 0.12
ACGTcount: A:0.34, C:0.00, G:0.52, T:0.14
Consensus pattern (7 bp):
AGAGATG
Found at i:50863549 original size:14 final size:14
Alignment explanation
Indices: 50863530--50863566 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
50863520 TGAGAGATGA
50863530 GAGGGATGAGGGAT
1 GAGGGATGAGGGAT
50863544 GAGGGATGAGGGAT
1 GAGGGATGAGGGAT
50863558 GAGGGATGA
1 GAGGGATGA
50863567 TTGAAAAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.57, T:0.14
Consensus pattern (14 bp):
GAGGGATGAGGGAT
Found at i:50873753 original size:16 final size:17
Alignment explanation
Indices: 50873726--50873761 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
50873716 AGAGAGTTGA
50873726 GAGAGAGGATGAGAGAT
1 GAGAGAGGATGAGAGAT
*
50873743 GAGAG-GGATGAGGGAT
1 GAGAGAGGATGAGAGAT
50873759 GAG
1 GAG
50873762 GGATGATTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.36, C:0.00, G:0.53, T:0.11
Consensus pattern (17 bp):
GAGAGAGGATGAGAGAT
Found at i:50882960 original size:10 final size:10
Alignment explanation
Indices: 50882945--50882996 Score: 56
Period size: 10 Copynumber: 5.3 Consensus size: 10
50882935 CAAATAATTT
50882945 AAAAATTATA
1 AAAAATTATA
50882955 AAAAA-T-T-
1 AAAAATTATA
50882962 AAAAATTAATA
1 AAAAATT-ATA
50882973 AAAAATTATA
1 AAAAATTATA
*
50882983 AAAAGTTCATA
1 AAAAATT-ATA
50882994 AAA
1 AAA
50882997 TTTCAAAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
7 5 0.14
8 2 0.06
9 1 0.03
10 15 0.42
11 13 0.36
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (10 bp):
AAAAATTATA
Found at i:50882966 original size:18 final size:18
Alignment explanation
Indices: 50882943--50882985 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
50882933 AACAAATAAT
50882943 TTAAAAATT-ATAAAAAA
1 TTAAAAATTAATAAAAAA
50882960 TTAAAAATTAATAAAAAA
1 TTAAAAATTAATAAAAAA
50882978 TTATAAAA
1 TTA-AAAA
50882986 AGTTCATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 9 0.38
18 11 0.46
19 4 0.17
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (18 bp):
TTAAAAATTAATAAAAAA
Found at i:50882994 original size:11 final size:9
Alignment explanation
Indices: 50882940--50882996 Score: 55
Period size: 11 Copynumber: 6.1 Consensus size: 9
50882930 ATCAACAAAT
50882940 AATT-TAAA
1 AATTATAAA
50882948 AATTATAAA
1 AATTATAAA
*
50882957 AAAT-TAAA
1 AATTATAAA
50882965 AATTAATAAAA
1 AATT-AT-AAA
50882976 AATTATAAA
1 AATTATAAA
50882985 AAGTTCATAAA
1 AA-TT-ATAAA
50882996 A
1 A
50882997 TTTCAAAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
8 11 0.27
9 12 0.29
10 5 0.12
11 13 0.32
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (9 bp):
AATTATAAA
Found at i:50883004 original size:28 final size:25
Alignment explanation
Indices: 50882940--50883005 Score: 69
Period size: 28 Copynumber: 2.4 Consensus size: 25
50882930 ATCAACAAAT
50882940 AATTTAAAAATTATAAAAAATTAAA
1 AATTTAAAAATTATAAAAAATTAAA
*
50882965 AATTAATAAAAAATTATAAAAAGTTCATAA
1 AATT--T-AAAAATTATAAAAAATT-A-AA
50882995 AATTTCAAAAA
1 AATTT-AAAAA
50883006 AAAAAAGAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
25 4 0.12
27 1 0.03
28 22 0.65
29 1 0.03
30 6 0.18
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (25 bp):
AATTTAAAAATTATAAAAAATTAAA
Found at i:50892576 original size:20 final size:19
Alignment explanation
Indices: 50892549--50892586 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
50892539 CACATAATTA
50892549 AAACAAGACAC-AATTAATC
1 AAACAAGAC-CTAATTAATC
50892568 AAACTAAGACCTAATTAAT
1 AAAC-AAGACCTAATTAAT
50892587 TCGGTTTGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.55, C:0.18, G:0.05, T:0.21
Consensus pattern (19 bp):
AAACAAGACCTAATTAATC
Found at i:50892835 original size:20 final size:21
Alignment explanation
Indices: 50892800--50892838 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
50892790 GTTAATGACT
50892800 AAATTATATGGAGCTGAATCA
1 AAATTATATGGAGCTGAATCA
*
50892821 AAATT-TATTGAGCTGAAT
1 AAATTATATGGAGCTGAAT
50892839 TGGAGCTGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.33
Consensus pattern (21 bp):
AAATTATATGGAGCTGAATCA
Found at i:50895381 original size:13 final size:13
Alignment explanation
Indices: 50895363--50895387 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50895353 CAGAAACACT
50895363 TTTCTTTTTTTTC
1 TTTCTTTTTTTTC
50895376 TTTCTTTTTTTT
1 TTTCTTTTTTTT
50895388 AATACACGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTCTTTTTTTTC
Found at i:50896796 original size:19 final size:19
Alignment explanation
Indices: 50896751--50896797 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
50896741 TAAACAACAA
50896751 AAATTAATTGAACTATATT
1 AAATTAATTGAACTATATT
* * *
50896770 TAACTAATTTAACTA-ACTT
1 AAATTAATTGAACTATA-TT
50896789 AAATTAATT
1 AAATTAATT
50896798 ATCTCAGCAA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
18 1 0.05
19 21 0.95
ACGTcount: A:0.47, C:0.09, G:0.02, T:0.43
Consensus pattern (19 bp):
AAATTAATTGAACTATATT
Found at i:50898992 original size:22 final size:21
Alignment explanation
Indices: 50898935--50899002 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 21
50898925 AGTATCCAGT
50898935 AACACGAATGGCTAAGAGCCATA
1 AACA-GAATGGCTAA-AGCCATA
* * *
50898958 AACAGGATAGCTATAAGCTATA
1 AACAGAATGGCTA-AAGCCATA
*
50898980 AATAGAATGGCTACAAGCCATA
1 AACAGAATGGCTA-AAGCCATA
50899002 A
1 A
50899003 GTACAGTAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
22 31 0.86
23 5 0.14
ACGTcount: A:0.46, C:0.18, G:0.19, T:0.18
Consensus pattern (21 bp):
AACAGAATGGCTAAAGCCATA
Found at i:50899055 original size:32 final size:32
Alignment explanation
Indices: 50898994--50899196 Score: 196
Period size: 32 Copynumber: 6.4 Consensus size: 32
50898984 GAATGGCTAC
* **
50898994 AAGCCATAAGT-ACAGTAATATGATTGGCACA
1 AAGCCATCAGTAACAGTAATATGACCGGCACA
* * **
50899025 AATCCATCAGTAGCAGTGGTATGACCGGCACA
1 AAGCCATCAGTAACAGTAATATGACCGGCACA
* * *
50899057 CAGCCATCAGTAACGGTAATATGATCGGCACA
1 AAGCCATCAGTAACAGTAATATGACCGGCACA
* *
50899089 AAGCCATCAGTAAC-GATAATATGATCGGTACA
1 AAGCCATCAGTAACAG-TAATATGACCGGCACA
** *
50899121 AAGCCATCAGTAATGGTAATATGATCGGCACA
1 AAGCCATCAGTAACAGTAATATGACCGGCACA
* * * *
50899153 AAGCCATTAGTAAC-GATAATATGATCGGTAAA
1 AAGCCATCAGTAACAG-TAATATGACCGGCACA
50899185 AAGCCATCAGTA
1 AAGCCATCAGTA
50899197 GCATCGCAGC
Statistics
Matches: 145, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
31 11 0.08
32 133 0.92
33 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (32 bp):
AAGCCATCAGTAACAGTAATATGACCGGCACA
Found at i:50899112 original size:64 final size:64
Alignment explanation
Indices: 50898994--50899196 Score: 266
Period size: 64 Copynumber: 3.2 Consensus size: 64
50898984 GAATGGCTAC
* * * * * ** * *
50898994 AAGCCATAAGT-ACAGTAATATGATTGGCACAAATCCATCAGTAGC-AGTGGTATGACCGGCACA
1 AAGCCATCAGTAACGGTAATATGATCGGCACAAAGCCATCAGTAACGA-TAATATGATCGGTACA
*
50899057 CAGCCATCAGTAACGGTAATATGATCGGCACAAAGCCATCAGTAACGATAATATGATCGGTACA
1 AAGCCATCAGTAACGGTAATATGATCGGCACAAAGCCATCAGTAACGATAATATGATCGGTACA
* * *
50899121 AAGCCATCAGTAATGGTAATATGATCGGCACAAAGCCATTAGTAACGATAATATGATCGGTAAA
1 AAGCCATCAGTAACGGTAATATGATCGGCACAAAGCCATCAGTAACGATAATATGATCGGTACA
50899185 AAGCCATCAGTA
1 AAGCCATCAGTA
50899197 GCATCGCAGC
Statistics
Matches: 124, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
63 9 0.07
64 114 0.92
65 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (64 bp):
AAGCCATCAGTAACGGTAATATGATCGGCACAAAGCCATCAGTAACGATAATATGATCGGTACA
Found at i:50899348 original size:24 final size:24
Alignment explanation
Indices: 50899314--50899395 Score: 110
Period size: 24 Copynumber: 3.4 Consensus size: 24
50899304 CCATGCTTAG
* **
50899314 AATCAGACATACAAATCACGGACA
1 AATCAGTCATACAAATCACAAACA
*
50899338 AATCAGTCATACCAATCACAAACA
1 AATCAGTCATACAAATCACAAACA
**
50899362 AATCAGTCATTTAAATCACAAACA
1 AATCAGTCATACAAATCACAAACA
50899386 AATCAGTCAT
1 AATCAGTCAT
50899396 TTACATCACG
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 51 1.00
ACGTcount: A:0.49, C:0.24, G:0.07, T:0.20
Consensus pattern (24 bp):
AATCAGTCATACAAATCACAAACA
Found at i:50899396 original size:24 final size:24
Alignment explanation
Indices: 50899326--50899424 Score: 108
Period size: 24 Copynumber: 4.1 Consensus size: 24
50899316 TCAGACATAC
** **
50899326 AAATCACGGACAAATCAGTCATAC
1 AAATCACAAACAAATCAGTCATTT
*
50899350 CAATCACAAACAAATCAGTCATTT
1 AAATCACAAACAAATCAGTCATTT
50899374 AAATCACAAACAAATCAGTCATTT
1 AAATCACAAACAAATCAGTCATTT
* ** * *
50899398 ACATCACGGACATATCAATCATTT
1 AAATCACAAACAAATCAGTCATTT
50899422 AAA
1 AAA
50899425 CTCGAGGGGC
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 63 1.00
ACGTcount: A:0.46, C:0.23, G:0.07, T:0.23
Consensus pattern (24 bp):
AAATCACAAACAAATCAGTCATTT
Found at i:50899485 original size:27 final size:27
Alignment explanation
Indices: 50899445--50899669 Score: 166
Period size: 27 Copynumber: 8.3 Consensus size: 27
50899435 AAAATAGTCA
* *
50899445 TTTACCCT-CTAGGGGCATTACGATTAT
1 TTTACCCTAC-AGGGGTATTACGATCAT
* * *
50899472 TTTACCTTACAGGGGTATTTCAATCAT
1 TTTACCCTACAGGGGTATTACGATCAT
* * * * *
50899499 TTAACCTTA-TGAGGGTACTACGGTCAT
1 TTTACCCTACAG-GGGTATTACGATCAT
* * * *
50899526 TTTACCCTATAGAGGCATTACGGTCAT
1 TTTACCCTACAGGGGTATTACGATCAT
** * * * *
50899553 TTTACCCTATGGGGGTTTTTCAATTAT
1 TTTACCCTACAGGGGTATTACGATCAT
* * *
50899580 TTTACCCTACGGGGGTATTTCGGTCAT
1 TTTACCCTACAGGGGTATTACGATCAT
* * *
50899607 TTTACCTTACAGAGGCATTACGATCAT
1 TTTACCCTACAGGGGTATTACGATCAT
* *
50899634 TTTACCCTACGGGGGTATTACGGTCAT
1 TTTACCCTACAGGGGTATTACGATCAT
50899661 TTTACCCTA
1 TTTACCCTA
50899670 TGGGAGTTTT
Statistics
Matches: 154, Mismatches: 41, Indels: 6
0.77 0.20 0.03
Matches are distributed among these distances:
26 1 0.01
27 151 0.98
28 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (27 bp):
TTTACCCTACAGGGGTATTACGATCAT
Found at i:50899582 original size:54 final size:54
Alignment explanation
Indices: 50899524--50899720 Score: 196
Period size: 54 Copynumber: 3.6 Consensus size: 54
50899514 TACTACGGTC
* * *
50899524 ATTTTACCCTATAGAGGCATTACGGTCATTTTACCCTATGGGGGTTTTTCAATT
1 ATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTATGGGGGTTTTTCAATT
* * * ** * ** * * *
50899578 ATTTTACCCTACGGGGGTATTTCGGTCATTTTACCTTACAGAGGCATTACGATC
1 ATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTATGGGGGTTTTTCAATT
* * **
50899632 ATTTTACCCTACGGGGGTATTACGGTCATTTTACCCTATGGGAGTTTTTTTTATT
1 ATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTATGGG-GGTTTTTCAATT
* * *
50899687 ATTTTACCCTATATGGGTATTATGGTCATTTTAC
1 ATTTTACCCTACAGGGGTATTACGGTCATTTTAC
50899721 AAATATTAGG
Statistics
Matches: 112, Mismatches: 30, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
54 77 0.69
55 35 0.31
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.42
Consensus pattern (54 bp):
ATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTATGGGGGTTTTTCAATT
Found at i:50899663 original size:81 final size:81
Alignment explanation
Indices: 50899441--50899669 Score: 264
Period size: 81 Copynumber: 2.8 Consensus size: 81
50899431 GGGCAAAATA
* * * * *
50899441 GTCA-TTTACCCT-CTAGGGGCATTACGATTATTTTACCTTACAGGGGTATTTCAATCATTTAAC
1 GTCATTTTACCCTAC-AGAGGCATTACGATCATTTTACCCTACGGGGGTATTTCAATCATTTTAC
* *
50899504 CTTATGAGGGTACTACG
65 CCTACGAGGGTACTACG
* * * * *
50899521 GTCATTTTACCCTATAGAGGCATTACGGTCATTTTACCCTATGGGGGTTTTTCAATTATTTTACC
1 GTCATTTTACCCTACAGAGGCATTACGATCATTTTACCCTACGGGGGTATTTCAATCATTTTACC
* * *
50899586 CTACGGGGGTATTTCG
66 CTACGAGGGTACTACG
* * **
50899602 GTCATTTTACCTTACAGAGGCATTACGATCATTTTACCCTACGGGGGTATTACGGTCATTTTACC
1 GTCATTTTACCCTACAGAGGCATTACGATCATTTTACCCTACGGGGGTATTTCAATCATTTTACC
50899667 CTA
66 CTA
50899670 TGGGAGTTTT
Statistics
Matches: 123, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
80 4 0.03
81 119 0.97
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (81 bp):
GTCATTTTACCCTACAGAGGCATTACGATCATTTTACCCTACGGGGGTATTTCAATCATTTTACC
CTACGAGGGTACTACG
Found at i:50902141 original size:46 final size:47
Alignment explanation
Indices: 50902051--50902143 Score: 109
Period size: 46 Copynumber: 2.0 Consensus size: 47
50902041 ACAGTAAAAG
* * * *
50902051 TACAGTGTGGGCCTTAGCCCATTACAGTATCAGAATTAGAAATAGAA
1 TACAGTGTGGACCTAAGCCCAATACAGTATCAGAATCAGAAATAGAA
* *
50902098 TACA-TGTGGACCTAAGCCCAATACAGTGA-CATAATCAGTAATAGAA
1 TACAGTGTGGACCTAAGCCCAATACAGT-ATCAGAATCAGAAATAGAA
50902144 ATGCAACAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
46 34 0.87
47 5 0.13
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.24
Consensus pattern (47 bp):
TACAGTGTGGACCTAAGCCCAATACAGTATCAGAATCAGAAATAGAA
Found at i:50902357 original size:22 final size:22
Alignment explanation
Indices: 50902294--50902357 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 22
50902284 CAGCAAAGCT
* *
50902294 GCCAGAAACCAGAATGGTTAAGA
1 GCCATAAA-CAGAATGGCTAAGA
* *
50902317 GCCATAAACAGGATAGCTATA-A
1 GCCATAAACAGAATGGCTA-AGA
*
50902339 GCTATAAACAGAATGGCTA
1 GCCATAAACAGAATGGCTA
50902358 CAACCCATAA
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
22 25 0.76
23 8 0.24
ACGTcount: A:0.44, C:0.17, G:0.22, T:0.17
Consensus pattern (22 bp):
GCCATAAACAGAATGGCTAAGA
Found at i:50902367 original size:22 final size:22
Alignment explanation
Indices: 50902318--50902367 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
50902308 TGGTTAAGAG
* * *
50902318 CCATAAACAGGATAGCTATAAG
1 CCATAAACAGAATAGCTACAAC
* *
50902340 CTATAAACAGAATGGCTACAAC
1 CCATAAACAGAATAGCTACAAC
50902362 CCATAA
1 CCATAA
50902368 GTACAGTAAT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.46, C:0.22, G:0.14, T:0.18
Consensus pattern (22 bp):
CCATAAACAGAATAGCTACAAC
Found at i:50902427 original size:32 final size:32
Alignment explanation
Indices: 50902362--50902497 Score: 150
Period size: 32 Copynumber: 4.3 Consensus size: 32
50902352 TGGCTACAAC
* *
50902362 CCATAAGT-ACAGTAATTTGATTGGCACAAAG
1 CCATAAGTAACAGTAATATGATCGGCACAAAG
* * *
50902393 CCATAAGTAGCAGTGATATGATCGGCACACAG
1 CCATAAGTAACAGTAATATGATCGGCACAAAG
* * *
50902425 CCATCATTAACGGTAATATGATCGGCACAAAG
1 CCATAAGTAACAGTAATATGATCGGCACAAAG
* *
50902457 CCATCAA-TAACAGTAATATGACCAGCACAAAG
1 CCAT-AAGTAACAGTAATATGATCGGCACAAAG
*
50902489 CCATCAGTA
1 CCATAAGTA
50902498 GCATCGCCAC
Statistics
Matches: 86, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
31 9 0.10
32 76 0.88
33 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.21
Consensus pattern (32 bp):
CCATAAGTAACAGTAATATGATCGGCACAAAG
Found at i:50902700 original size:24 final size:24
Alignment explanation
Indices: 50902673--50902726 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
50902663 GCTCAGAATC
*
50902673 AGTCATACAAATTACAGACAAATA
1 AGTCATACAAATCACAGACAAATA
* *
50902697 AGTCATACCAATCACAGACAAATC
1 AGTCATACAAATCACAGACAAATA
50902721 AGTCAT
1 AGTCAT
50902727 TTACTTCACG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.48, C:0.22, G:0.09, T:0.20
Consensus pattern (24 bp):
AGTCATACAAATCACAGACAAATA
Found at i:50902828 original size:27 final size:26
Alignment explanation
Indices: 50902798--50903050 Score: 138
Period size: 27 Copynumber: 9.4 Consensus size: 26
50902788 GGGCATTATG
* * *
50902798 GTCATTTTACCTTACAGAGGTATTTC
1 GTCATTTTACCTTATAGGGGTATTAC
*
50902824 AGTCA-TTTAACTCTATAGGGGTATTAC
1 -GTCATTTTACCT-TATAGGGGTATTAC
* * *
50902851 GATTATTTTACCCTATAGGGGCATTAC
1 G-TCATTTTACCTTATAGGGGTATTAC
* * *
50902878 GATCATTTTATCC-AAT-GGAGGTCTTTC
1 G-TCATTTTA-CCTTATAGG-GGTATTAC
* *
50902905 AATCATTTTACCTTACAGGGGTATTAC
1 -GTCATTTTACCTTATAGGGGTATTAC
*
50902932 GGTCATTTTACCTTATAGGGGCT-TTATG
1 -GTCATTTTACCTTATAGGGG-TATTA-C
* ** *
50902960 GTTATTTTATCC-TACGGGGGCATTACC
1 GTCATTTTA-CCTTATAGGGGTATTA-C
* * * *
50902987 GTCATTTTACCCTATGGGGGTTTTTC
1 GTCATTTTACCTTATAGGGGTATTAC
* *
50903013 GGTTATTTTACCCTATAGGGGTATTAC
1 -GTCATTTTACCTTATAGGGGTATTAC
50903040 AGTCATTTTAC
1 -GTCATTTTAC
50903051 AAATATTAGG
Statistics
Matches: 173, Mismatches: 39, Indels: 28
0.72 0.16 0.12
Matches are distributed among these distances:
26 14 0.08
27 147 0.85
28 12 0.07
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.40
Consensus pattern (26 bp):
GTCATTTTACCTTATAGGGGTATTAC
Found at i:50902872 original size:81 final size:80
Alignment explanation
Indices: 50902776--50903049 Score: 271
Period size: 81 Copynumber: 3.4 Consensus size: 80
50902766 AAAATATTCA
* * * * *
50902776 TTTAACCTCTAGGGGCATTATGGTCATTTTA-CCTTACAGAGGTATTTCAGTCATTTAACTCTAT
1 TTTACCCTATAGGGGCATTACGGTCATTTTATCC-TACGGAGGTATTTCAGTCATTTTAC-CTAT
*
50902840 AGGGGTATTACGATTAT
64 AGGGGTATTACGGTTAT
* * * * * *
50902857 TTTACCCTATAGGGGCATTACGATCATTTTATCCAATGGAGGTCTTTCAATCATTTTACCTTACA
1 TTTACCCTATAGGGGCATTACGGTCATTTTATCCTACGGAGGTATTTCAGTCATTTTACC-TATA
*
50902922 GGGGTATTACGGTCAT
65 GGGGTATTACGGTTAT
* * * * * * * * *
50902938 TTTACCTTATAGGGGCTTTATGGTTATTTTATCCTACGGGGGCATTACCGTCATTTTACCCTATG
1 TTTACCCTATAGGGGCATTACGGTCATTTTATCCTACGGAGGTATTTCAGTCATTTTA-CCTATA
* *
50903003 GGGGTTTTTCGGTTAT
65 GGGGTATTACGGTTAT
* *
50903019 TTTACCCTATAGGGGTATTACAGTCATTTTA
1 TTTACCCTATAGGGGCATTACGGTCATTTTA
50903050 CAAATATTAG
Statistics
Matches: 153, Mismatches: 37, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
80 1 0.01
81 148 0.97
82 4 0.03
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.40
Consensus pattern (80 bp):
TTTACCCTATAGGGGCATTACGGTCATTTTATCCTACGGAGGTATTTCAGTCATTTTACCTATAG
GGGTATTACGGTTAT
Found at i:50902884 original size:54 final size:53
Alignment explanation
Indices: 50902826--50903050 Score: 163
Period size: 54 Copynumber: 4.2 Consensus size: 53
50902816 GGTATTTCAG
* *
50902826 TCATTTAACTCTATAGGGGTATTACGATTATTTTACCCTATAGGGGCATTACGA
1 TCATTTTACTCTATAGGGGT-TTACGATTATTTTACCCTACAGGGGCATTACGA
* * * * * * *
50902880 TCATTTTA-TCCA-ATGGAGGTCTTTCAATCATTTTACCTTACAGGGGTATTACGG
1 TCATTTTACTCTATA-GG-GGT-TTACGATTATTTTACCCTACAGGGGCATTACGA
* * * *
50902934 TCATTTTAC-CTTATAGGGGCTTTATGGTTATTTTATCCTACGGGGGCATTACCG-
1 TCATTTTACTC-TATAGGGG-TTTACGATTATTTTACCCTACAGGGGCATTA-CGA
* * * * * *
50902988 TCATTTTACCCTATGGGGGTTTTTCGGTTATTTTACCCTATAGGGGTATTAC-A
1 TCATTTTACTCTATAGGGG-TTTACGATTATTTTACCCTACAGGGGCATTACGA
50903041 GTCATTTTAC
1 -TCATTTTAC
50903051 AAATATTAGG
Statistics
Matches: 133, Mismatches: 28, Indels: 20
0.73 0.15 0.11
Matches are distributed among these distances:
52 1 0.01
53 6 0.05
54 118 0.89
55 7 0.05
56 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (53 bp):
TCATTTTACTCTATAGGGGTTTACGATTATTTTACCCTACAGGGGCATTACGA
Found at i:50906398 original size:15 final size:15
Alignment explanation
Indices: 50906380--50906409 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
50906370 TTTAATGGAA
50906380 ATGATTTTAACGCGT
1 ATGATTTTAACGCGT
50906395 ATGATTTTAACGCGT
1 ATGATTTTAACGCGT
50906410 CGACATGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (15 bp):
ATGATTTTAACGCGT
Found at i:50910241 original size:15 final size:16
Alignment explanation
Indices: 50910221--50910250 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50910211 TGGTGCCTTG
50910221 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
50910236 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
50910251 AGCGTGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:50915025 original size:27 final size:27
Alignment explanation
Indices: 50914995--50915066 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
50914985 ATTCAGAGTT
50914995 CGCCACAAA-GTTTATTCTTTGATATTA
1 CGCCACAAAGGTTT-TTCTTTGATATTA
* *
50915022 CGCCACAAAGGTGTTTCTTTTATATTA
1 CGCCACAAAGGTTTTTCTTTGATATTA
50915049 CAG-CACAAAGGTTTTTCT
1 C-GCCACAAAGGTTTTTCT
50915067 ATCCTGATGT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
27 36 0.90
28 4 0.10
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (27 bp):
CGCCACAAAGGTTTTTCTTTGATATTA
Found at i:50916569 original size:21 final size:22
Alignment explanation
Indices: 50916536--50916593 Score: 57
Period size: 21 Copynumber: 2.7 Consensus size: 22
50916526 TAATTATAAA
* *
50916536 AATTAACACAAATTTTATAT-C
1 AATTAATATAAATTTTATATAC
**
50916557 AATTAATATAAA-TCAATATAC
1 AATTAATATAAATTTTATATAC
*
50916578 AATTAATATTAATTTT
1 AATTAATATAAATTTT
50916594 TTAATCATCT
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
20 5 0.18
21 22 0.79
22 1 0.04
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (22 bp):
AATTAATATAAATTTTATATAC
Found at i:50917037 original size:23 final size:22
Alignment explanation
Indices: 50917011--50917063 Score: 70
Period size: 23 Copynumber: 2.4 Consensus size: 22
50917001 TTAAAATGAT
* *
50917011 ATTTTTAATTTTTTGAATTTTG
1 ATTTTTAATTTTATAAATTTTG
*
50917033 AATTTTTTATTTTATAAATTTTG
1 -ATTTTTAATTTTATAAATTTTG
50917056 ATTTTTAA
1 ATTTTTAA
50917064 AAATTATATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 7 0.27
23 19 0.73
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (22 bp):
ATTTTTAATTTTATAAATTTTG
Found at i:50920071 original size:34 final size:35
Alignment explanation
Indices: 50920013--50920080 Score: 104
Period size: 34 Copynumber: 2.0 Consensus size: 35
50920003 CAAACACCAA
50920013 AAAATATTTTCCAGTAAATCATTTTACAGAAAATT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAATT
*
50920048 AAAATATTTTCTC-G-AAATCATTTTACGGAAAAT
1 AAAATATTTTC-CAGTAAATCATTTTACAGAAAAT
50920081 ATTTTATTGG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
34 18 0.58
35 12 0.39
36 1 0.03
ACGTcount: A:0.44, C:0.12, G:0.07, T:0.37
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAATT
Found at i:50923933 original size:21 final size:21
Alignment explanation
Indices: 50923907--50923982 Score: 64
Period size: 21 Copynumber: 3.6 Consensus size: 21
50923897 CGCTACTTTG
50923907 CTTCCCTCGCTGCAGCCTCTA
1 CTTCCCTCGCTGCAGCCTCTA
* * ** *
50923928 CTTCCCTTGTTTTAGCCTCTG
1 CTTCCCTCGCTGCAGCCTCTA
* *
50923949 CTTCCCTC-TTAGCAGCCTGTA
1 CTTCCCTCGCT-GCAGCCTCTA
*
50923970 CTTCTCTCGCTGC
1 CTTCCCTCGCTGC
50923983 CGCATCTGCT
Statistics
Matches: 41, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
20 2 0.05
21 38 0.93
22 1 0.02
ACGTcount: A:0.08, C:0.41, G:0.14, T:0.37
Consensus pattern (21 bp):
CTTCCCTCGCTGCAGCCTCTA
Found at i:50924044 original size:66 final size:66
Alignment explanation
Indices: 50923970--50924108 Score: 192
Period size: 66 Copynumber: 2.1 Consensus size: 66
50923960 GCAGCCTGTA
* *
50923970 CTTCTCTCGCTGCCGCATCTGCTCTAAGCTGCT-GCTGGAGTTCTTCATA-CTTTCGTTGAACCT
1 CTTCTCTCGCTGCCGCATCTACTCTAAGCTG-TAGCTGGAGTTCTTCATATC-TTCGTTGAACAT
50924033 CAG
64 CAG
* * * *
50924036 CTTCTCTCGCTGCTGCATCTACTTTAAGTTGTAGCTGGAGTTCTTCATATCTTCTTTGAACATCA
1 CTTCTCTCGCTGCCGCATCTACTCTAAGCTGTAGCTGGAGTTCTTCATATCTTCGTTGAACATCA
50924101 G
66 G
50924102 CTTCTCT
1 CTTCTCT
50924109 TGATGTTGCC
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
65 1 0.02
66 63 0.97
67 1 0.02
ACGTcount: A:0.15, C:0.29, G:0.17, T:0.39
Consensus pattern (66 bp):
CTTCTCTCGCTGCCGCATCTACTCTAAGCTGTAGCTGGAGTTCTTCATATCTTCGTTGAACATCA
G
Found at i:50924127 original size:66 final size:66
Alignment explanation
Indices: 50924003--50924133 Score: 174
Period size: 66 Copynumber: 2.0 Consensus size: 66
50923993 CTAAGCTGCT
* * *
50924003 GCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGCTGCTGCATCTACTTTAAGTTGT
1 GCTGGAGTTCTTCATACTTTCGTTGAACATCAGCTTCTCTCGATGCTGCATCCACTTTAAGTTGT
50924068 A
66 A
* * * * *
50924069 GCTGGAGTTCTTCATA-TCTTCTTTGAACATCAGCTTCTCTTGATGTTGCCTCCGCTTTAAGTTG
1 GCTGGAGTTCTTCATACT-TTCGTTGAACATCAGCTTCTCTCGATGCTGCATCCACTTTAAGTTG
50924133 T
65 T
50924134 GTAATTTGCT
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
65 1 0.02
66 55 0.98
ACGTcount: A:0.16, C:0.24, G:0.18, T:0.41
Consensus pattern (66 bp):
GCTGGAGTTCTTCATACTTTCGTTGAACATCAGCTTCTCTCGATGCTGCATCCACTTTAAGTTGT
A
Found at i:50929562 original size:9 final size:9
Alignment explanation
Indices: 50929526--50929978 Score: 198
Period size: 9 Copynumber: 52.8 Consensus size: 9
50929516 AATTGCACGG
50929526 GTAAGTTAT
1 GTAAGTTAT
*
50929535 GT-A-TTGT
1 GTAAGTTAT
*
50929542 GTAAGCTAT
1 GTAAGTTAT
*
50929551 GTAAGTTGT
1 GTAAGTTAT
50929560 GT-A-TTAT
1 GTAAGTTAT
*
50929567 GTAAATTAT
1 GTAAGTTAT
50929576 -T-A-TTAT
1 GTAAGTTAT
50929582 GCTTTAAGTTAT
1 G---TAAGTTAT
*
50929594 GTAAGTAAT
1 GTAAGTTAT
50929603 GT-A-TTAT
1 GTAAGTTAT
*
50929610 GTAAGTTGT
1 GTAAGTTAT
*
50929619 GT-A-TAAT
1 GTAAGTTAT
*
50929626 GTTAGTTAT
1 GTAAGTTAT
50929635 GTAAGTTAT
1 GTAAGTTAT
50929644 GTAAGTTAT
1 GTAAGTTAT
50929653 GT-A---A-
1 GTAAGTTAT
50929657 GTAAGTTAT
1 GTAAGTTAT
50929666 GTAAGTTAT
1 GTAAGTTAT
** *
50929675 CAAAGTAAT
1 GTAAGTTAT
*
50929684 GTATGTTAT
1 GTAAGTTAT
50929693 GTAAG-T-T
1 GTAAGTTAT
50929700 GTAAGTTAT
1 GTAAGTTAT
*
50929709 -TATGTATTAT
1 GTAAG--TTAT
*
50929719 GTAAGTTAA
1 GTAAGTTAT
* *
50929728 G-ATGGATTAC
1 GTA-AG-TTAT
50929738 GTAAGTTAT
1 GTAAGTTAT
50929747 GTAAGTTAAAT
1 GTAAGTT--AT
50929758 GT-A-TTAT
1 GTAAGTTAT
50929765 GTAAG-T-T
1 GTAAGTTAT
50929772 GTAAGTTAAAT
1 GTAAGTT--AT
50929783 GT-A-TTAT
1 GTAAGTTAT
50929790 GTAAG-T-T
1 GTAAGTTAT
50929797 GTAAGTTAGAT
1 GTAAGTT--AT
50929808 GT-A-TTAT
1 GTAAGTTAT
50929815 GTAAG-T-T
1 GTAAGTTAT
50929822 GTAAGTTAGAT
1 GTAAGTT--AT
50929833 GT-A-TTAT
1 GTAAGTTAT
50929840 GTAAG-T-T
1 GTAAGTTAT
50929847 GTAAGTTAT
1 GTAAGTTAT
*
50929856 -TATGTATTAT
1 GTAAG--TTAT
50929866 GTAAGTTAT
1 GTAAGTTAT
50929875 GTAAGTTAAAT
1 GTAAGTT--AT
50929886 GT-A-TTAT
1 GTAAGTTAT
50929893 G-AAGGTTAT
1 GTAA-GTTAT
*
50929902 GTAAGTTGT
1 GTAAGTTAT
**
50929911 GTAAGAGAT
1 GTAAGTTAT
*
50929920 TTAAGTTAT
1 GTAAGTTAT
* *
50929929 GTGAGTTTT
1 GTAAGTTAT
50929938 GT-A-TTAT
1 GTAAGTTAT
50929945 GTAAGTTAT
1 GTAAGTTAT
*
50929954 GTAGGTTAT
1 GTAAGTTAT
* *
50929963 TTAGGTTAT
1 GTAAGTTAT
50929972 GTAAGTT
1 GTAAGTT
50929979 TTGAGTTGTT
Statistics
Matches: 337, Mismatches: 45, Indels: 124
0.67 0.09 0.25
Matches are distributed among these distances:
4 2 0.01
5 2 0.01
6 4 0.01
7 75 0.22
8 34 0.10
9 169 0.50
10 21 0.06
11 25 0.07
12 5 0.01
ACGTcount: A:0.32, C:0.01, G:0.22, T:0.45
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:50929596 original size:43 final size:42
Alignment explanation
Indices: 50929526--50929656 Score: 126
Period size: 43 Copynumber: 3.1 Consensus size: 42
50929516 AATTGCACGG
* * *
50929526 GTAAGTTATGTAT--TGTGTAAGCTATGTAAGTTGTGTATTAT
1 GTAAATTATGTATAATGT-TAAGTTATGTAAGTTATGTATTAT
* *
50929567 GTAAATTAT-TATTATGCTTTAAGTTATGTAAGTAATGTATTAT
1 GTAAATTATGTATAATG--TTAAGTTATGTAAGTTATGTATTAT
* *
50929610 GTAAGTTGTGTATAATGTT-AGTTATGTAAGTTATGTAAGTTAT
1 GTAAATTATGTATAATGTTAAGTTATGTAAGTTATGT-A-TTAT
50929653 GTAA
1 GTAA
50929657 GTAAGTTATG
Statistics
Matches: 75, Mismatches: 8, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
40 3 0.04
41 24 0.32
42 5 0.07
43 36 0.48
44 7 0.09
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.47
Consensus pattern (42 bp):
GTAAATTATGTATAATGTTAAGTTATGTAAGTTATGTATTAT
Found at i:50929611 original size:59 final size:56
Alignment explanation
Indices: 50929542--50929672 Score: 151
Period size: 59 Copynumber: 2.3 Consensus size: 56
50929532 TATGTATTGT
* *
50929542 GTAAGCTATGTAAGTTGTGTATTATGTAAATTAT-T-A-TTATGCTTTAAGTTATGTAA
1 GTAAGTTATGTAAGTTGTGTATAATGTAAATTATGTAAGTTATG---TAAGTTATGTAA
* *
50929598 GTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATGTAAGTTATGTAAGTTATGTAA
1 GTAA-G--TTATGTAAGTTGTGTATAATGTAAATTATGTAAGTTATGTAAGTTATGTAA
50929657 GTAAGTTATGTAAGTT
1 GTAAGTTATGTAAGTT
50929673 ATCAAAGTAA
Statistics
Matches: 65, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
56 15 0.23
57 1 0.02
58 1 0.02
59 41 0.63
60 1 0.02
61 1 0.02
62 5 0.08
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.46
Consensus pattern (56 bp):
GTAAGTTATGTAAGTTGTGTATAATGTAAATTATGTAAGTTATGTAAGTTATGTAA
Found at i:50929621 original size:25 final size:26
Alignment explanation
Indices: 50929586--50929978 Score: 296
Period size: 25 Copynumber: 15.2 Consensus size: 26
50929576 TATTATGCTT
50929586 TAAGTTATGTAAG-TAATGTATTATG
1 TAAGTTATGTAAGTTAATGTATTATG
*
50929611 TAAGTTGTGT-A--TAATGTTAGTTATG
1 TAAGTTATGTAAGTTAATG-TA-TTATG
50929636 TAAGTTATGTAAGTT-ATGTA--A-G
1 TAAGTTATGTAAGTTAATGTATTATG
*
50929658 TAAGTTATGTAAGTTATCAAAGTA--ATG
1 TAAGTTATGTAAG-T-T-AATGTATTATG
*
50929685 TATGTTATGTAAGTTGTAA-GTTATTATG
1 TAAGTTATGTAAG-T-TAATG-TATTATG
* *
50929713 T-A-TTATGTAAGTTAAGATGGATTACG
1 TAAGTTATGTAAGTT-A-ATGTATTATG
50929739 TAAGTTATGTAAGTTAAATGTATTATG
1 TAAGTTATGTAAGTT-AATGTATTATG
50929766 TAAG-T-TGTAAGTTAAATGTATTATG
1 TAAGTTATGTAAGTT-AATGTATTATG
50929791 TAAG-T-TGTAAGTTAGATGTATTATG
1 TAAGTTATGTAAGTTA-ATGTATTATG
50929816 TAAG-T-TGTAAGTTAGATGTATTATG
1 TAAGTTATGTAAGTTA-ATGTATTATG
50929841 TAAG-T-TGTAAGTTATTATGTATTATG
1 TAAGTTATGTAAGTTA--ATGTATTATG
50929867 TAAGTTATGTAAGTTAAATGTATTATG
1 TAAGTTATGTAAGTT-AATGTATTATG
* ** *
50929894 -AAGGTTATGTAAGTT-GTGTAAGAGATT
1 TAA-GTTATGTAAGTTAATGT-A-TTATG
* *
50929921 TAAGTTATGTGAGTT-TTGTATTATG
1 TAAGTTATGTAAGTTAATGTATTATG
* *
50929946 TAAGTTATGTAGGTT-ATTTAGGTTATG
1 TAAGTTATGTAAGTTAATGTA--TTATG
50929973 TAAGTT
1 TAAGTT
50929979 TTGAGTTGTT
Statistics
Matches: 315, Mismatches: 24, Indels: 56
0.80 0.06 0.14
Matches are distributed among these distances:
22 14 0.04
23 7 0.02
24 6 0.02
25 129 0.41
26 47 0.15
27 83 0.26
28 28 0.09
29 1 0.00
ACGTcount: A:0.33, C:0.01, G:0.22, T:0.45
Consensus pattern (26 bp):
TAAGTTATGTAAGTTAATGTATTATG
Found at i:50929660 original size:13 final size:13
Alignment explanation
Indices: 50929644--50929671 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
50929634 TGTAAGTTAT
50929644 GTAAGTTATGTAA
1 GTAAGTTATGTAA
50929657 GTAAGTTATGTAA
1 GTAAGTTATGTAA
50929670 GT
1 GT
50929672 TATCAAAGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.25, T:0.39
Consensus pattern (13 bp):
GTAAGTTATGTAA
Found at i:50929660 original size:22 final size:22
Alignment explanation
Indices: 50929635--50929724 Score: 82
Period size: 22 Copynumber: 4.1 Consensus size: 22
50929625 TGTTAGTTAT
50929635 GTAAGTTATGTAAGTTATGTAA
1 GTAAGTTATGTAAGTTATGTAA
50929657 GTAAGTTATGTAAGTTATCAAAGTAA
1 GTAAGTTATGTAAGTTAT----GTAA
*
50929683 TGTATGTTATGTAAG-T-TGTAA
1 -GTAAGTTATGTAAGTTATGTAA
*
50929704 GTTA-TTATGT-A-TTATGTAA
1 GTAAGTTATGTAAGTTATGTAA
50929723 GT
1 GT
50929725 TAAGATGGAT
Statistics
Matches: 58, Mismatches: 3, Indels: 17
0.74 0.04 0.22
Matches are distributed among these distances:
18 2 0.03
19 13 0.22
20 2 0.03
21 4 0.07
22 18 0.31
25 1 0.02
26 5 0.09
27 13 0.22
ACGTcount: A:0.34, C:0.01, G:0.21, T:0.43
Consensus pattern (22 bp):
GTAAGTTATGTAAGTTATGTAA
Found at i:50929721 original size:19 final size:19
Alignment explanation
Indices: 50929699--50929747 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
50929689 TTATGTAAGT
* *
50929699 TGTAAGTTATTATGTATTA
1 TGTAAGTTATGATGGATTA
*
50929718 TGTAAGTTAAGATGGATTA
1 TGTAAGTTATGATGGATTA
*
50929737 CGTAAGTTATG
1 TGTAAGTTATG
50929748 TAAGTTAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.33, C:0.02, G:0.22, T:0.43
Consensus pattern (19 bp):
TGTAAGTTATGATGGATTA
Found at i:50929858 original size:19 final size:19
Alignment explanation
Indices: 50929834--50929874 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
50929824 AAGTTAGATG
50929834 TATTATGTAAGT-TGTAAGT
1 TATTATGT-AGTATGTAAGT
*
50929853 TATTATGTATTATGTAAGT
1 TATTATGTAGTATGTAAGT
50929872 TAT
1 TAT
50929875 GTAAGTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 2 0.10
19 18 0.90
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (19 bp):
TATTATGTAGTATGTAAGT
Found at i:50929945 original size:43 final size:43
Alignment explanation
Indices: 50929898--50929981 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 43
50929888 ATTATGAAGG
* *
50929898 TTATGTAAGTTGTGTAAGAGATTTAAGTTATGTGAGTTTTGTA
1 TTATGTAAGTTATGTAAGAGATTTAAGTTATGTAAGTTTTGTA
* ** *
50929941 TTATGTAAGTTATGTAGGTTATTTAGGTTATGTAAGTTTTG
1 TTATGTAAGTTATGTAAGAGATTTAAGTTATGTAAGTTTTG
50929982 AGTTGTTCAG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.26, C:0.00, G:0.25, T:0.49
Consensus pattern (43 bp):
TTATGTAAGTTATGTAAGAGATTTAAGTTATGTAAGTTTTGTA
Found at i:50932550 original size:40 final size:42
Alignment explanation
Indices: 50932501--50932582 Score: 107
Period size: 41 Copynumber: 2.0 Consensus size: 42
50932491 TTGTCGATTC
*
50932501 CAACTTTTACGGCG-CTT-ACAATCAAACGCCACTAAT-TTTA
1 CAACATTTACGGCGTCTTGACAAT-AAACGCCACTAATATTTA
* *
50932541 CAACATTTACGGCGTTTTGAGAATAAACGCCACTAATATTTA
1 CAACATTTACGGCGTCTTGACAATAAACGCCACTAATATTTA
50932583 ATTCGTCAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
40 13 0.36
41 15 0.42
42 8 0.22
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.30
Consensus pattern (42 bp):
CAACATTTACGGCGTCTTGACAATAAACGCCACTAATATTTA
Found at i:50933283 original size:31 final size:32
Alignment explanation
Indices: 50933202--50933283 Score: 96
Period size: 31 Copynumber: 2.6 Consensus size: 32
50933192 TTCCCAAATT
* *
50933202 CCTAACCCATAACCCCT-AATTCCCCTAAACC
1 CCTAAACCATAACCCCTAAACTCCCCTAAACC
* * * *
50933233 CTTAAAGCATAAACCCTAAACTCCTCT-AACC
1 CCTAAACCATAACCCCTAAACTCCCCTAAACC
50933264 CCTAAACCATAACCCCTAAA
1 CCTAAACCATAACCCCTAAA
50933284 AAATTTTATT
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
31 34 0.83
32 7 0.17
ACGTcount: A:0.38, C:0.41, G:0.01, T:0.20
Consensus pattern (32 bp):
CCTAAACCATAACCCCTAAACTCCCCTAAACC
Found at i:50933600 original size:7 final size:7
Alignment explanation
Indices: 50933554--50933604 Score: 61
Period size: 7 Copynumber: 7.4 Consensus size: 7
50933544 CTTACCGTTC
50933554 AAACCCT
1 AAACCCT
**
50933561 AAACCAG
1 AAACCCT
50933568 AAATCCCT
1 AAA-CCCT
50933576 AAA-CCT
1 AAACCCT
50933582 AAACCC-
1 AAACCCT
50933588 AAACCCT
1 AAACCCT
50933595 AAACCCT
1 AAACCCT
50933602 AAA
1 AAA
50933605 TCTTAACTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
6 12 0.32
7 20 0.54
8 5 0.14
ACGTcount: A:0.49, C:0.37, G:0.02, T:0.12
Consensus pattern (7 bp):
AAACCCT
Found at i:50934068 original size:110 final size:113
Alignment explanation
Indices: 50933883--50934148 Score: 328
Period size: 110 Copynumber: 2.4 Consensus size: 113
50933873 TTTTAAATCT
* *
50933883 CTGATCATTAGCGGCGCTTTTCTAAAAACGCCGCTAAATCCCTCAAAAGCACAGAAAACGACGAC
1 CTGAACATTAGCGGCGCTTTACTAAAAACGCCGCTAAATCCCTCAAAAGCACAGAAAACGACGAC
* *
50933948 GTTGCGCTTAGTTTTTTTTGCGGCGCTTTCA-AAAAACGCCACTAAAGA
66 GTTGCGCTTAG-GTTTTTTGCGGCGCTTTAACAAAAACGCCACTAAAGA
* * *
50933996 CTGAACATTA-CGGCGCTTTAC-AAAAACGCCGCTAAAATCCC-CGAAAGC-CAGAAAACGGCGT
1 CTGAACATTAGCGGCGCTTTACTAAAAACGCCGCT-AAATCCCTCAAAAGCACAGAAAACGACGA
* *
50934057 CGTTGGGCTTAGGTTTTTTGCGGCGCTTTAACAAAAACGCCGCTAAAGA
65 CGTTGCGCTTAGGTTTTTTGCGGCGCTTTAACAAAAACGCCACTAAAGA
* * * *
50934106 CTTCAGCATTAGTGGCGCTTT-CTGTAAAAGCGCCGCTAAATCC
1 C-TGAACATTAGCGGCGCTTTAC--TAAAAACGCCGCTAAATCC
50934149 TGAAGCTCGG
Statistics
Matches: 133, Mismatches: 13, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
109 17 0.13
110 39 0.29
111 26 0.20
112 25 0.19
113 15 0.11
114 11 0.08
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.24
Consensus pattern (113 bp):
CTGAACATTAGCGGCGCTTTACTAAAAACGCCGCTAAATCCCTCAAAAGCACAGAAAACGACGAC
GTTGCGCTTAGGTTTTTTGCGGCGCTTTAACAAAAACGCCACTAAAGA
Found at i:50947076 original size:27 final size:26
Alignment explanation
Indices: 50947036--50947096 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
50947026 TAGGTTAATT
* * *
50947036 TTAAAAT-AAGTAATATGTAAAATAAC
1 TTAAAATAAAATAATATAT-AAAGAAC
*
50947062 TTTAAATAAAATAATATATAAAGAAC
1 TTAAAATAAAATAATATATAAAGAAC
50947088 TTAAAATAA
1 TTAAAATAA
50947097 TTAGCCTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
26 20 0.69
27 9 0.31
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (26 bp):
TTAAAATAAAATAATATATAAAGAAC
Found at i:50947144 original size:21 final size:21
Alignment explanation
Indices: 50947115--50947154 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
50947105 ATAAGTTAGG
50947115 TTAAGATAATAAATAAAAGGT
1 TTAAGATAATAAATAAAAGGT
* **
50947136 TTAATATAATCTATAAAAG
1 TTAAGATAATAAATAAAAG
50947155 AGAAAATTGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.55, C:0.03, G:0.10, T:0.33
Consensus pattern (21 bp):
TTAAGATAATAAATAAAAGGT
Found at i:50949232 original size:132 final size:132
Alignment explanation
Indices: 50949090--50949359 Score: 371
Period size: 132 Copynumber: 2.0 Consensus size: 132
50949080 AACCTCGAGC
* * *
50949090 AGATAAAATTACAGGCTTCAATGTACTCCACTGTAATCACAGGGAGGTAAAATTCACCATCTTTG
1 AGATAGAATTACAGGCTTCAATGTACTCCACTGTAATCACAAGGAGGTAAAATCCACCATCTTTG
* * * * * * * *
50949155 ATTTGTTCGACTATTACTTAGGGAGATGAGATCTGAAATCTT-CAATCTATTCCGCTGCTGCCCA
66 ATCTGCTCCACTATTACGTAAGGAGATGAGATCTGAAAT-TTCCAACCTATTCCACTGCTGACCA
50949219 GGG
130 GGG
* * * *
50949222 AGATAGAATTACTGGTTTCAATGTATTCCACTGTAATCACAAGGAGGTAAAATCCGCCATCTTTG
1 AGATAGAATTACAGGCTTCAATGTACTCCACTGTAATCACAAGGAGGTAAAATCCACCATCTTTG
* *
50949287 ATCTGCTCCACTATTGCGTAAGGAGATGAGATCTGATATTTCCAACCTATTCCACTGCTGACCAG
66 ATCTGCTCCACTATTACGTAAGGAGATGAGATCTGAAATTTCCAACCTATTCCACTGCTGACCAG
50949352 GG
131 GG
50949354 AGATAG
1 AGATAG
50949360 GACTTGTGGG
Statistics
Matches: 120, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
131 2 0.02
132 118 0.98
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30
Consensus pattern (132 bp):
AGATAGAATTACAGGCTTCAATGTACTCCACTGTAATCACAAGGAGGTAAAATCCACCATCTTTG
ATCTGCTCCACTATTACGTAAGGAGATGAGATCTGAAATTTCCAACCTATTCCACTGCTGACCAG
GG
Found at i:50949654 original size:129 final size:128
Alignment explanation
Indices: 50949276--50950099 Score: 1132
Period size: 128 Copynumber: 6.4 Consensus size: 128
50949266 AGGTAAAATC
* * * * * * **
50949276 CGCCATCTTTGATCTGCTCCACTATTGCGTAAGGAGATGAGATCTG-ATATTTCCAACCTATTCC
1 CGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTA-ATTTCCAACCTATTCC
*
50949340 ACTGCTGACCAGGGAGATAGGACTTGTGGGTTAAATCTGCTTCCTTACTCTTGAAGATAAGATT
65 ACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGATT
*
50949404 CGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTTCAACCTATTCCA
1 CGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCA
** * *
50949469 CTGCTGACCAATGAGATAGGACTTGTGGCTTAAATCTACTTCCTTACTCTTGAAGATATGATT
66 CTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGATT
* * *
50949532 CACCGTCTTCGATCTGCTCCACTACTGCTTATGGAGACAAGATCTGTAATTTCTCAACCTATTCC
1 CGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTC-CAACCTATTCC
* * *
50949597 ACTGCTGACCAGGAATATAGGACTTGTGGCTTAAATTTGCTTCCTTACTCTTGAAGATAAGATT
65 ACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGATT
* *
50949661 TGCCGTCTTCGATCTGCTCCGCTACTGCTT-GTGGAGATAAGATCTGTAATTTCCCAACCTATTC
1 CGCCGTCTTCGATCTGCTCCGCTACTGCTTAG-GGAGACAAGATCTGTAATTT-CCAACCTATTC
* * * *
50949725 CACTGCTGACCAGGGATATAGGTCTTGTGGCTTAAAT-TGTTTTCTTACTCTTGAAGATAAGATT
64 CACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGATT
* * * ** *
50949789 TGTCGTCTTCAATCTGCTCCGCTACTGCTTAGGGAGACAATTTCTGCAATTTCCAACCTATTCCA
1 CGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCA
* * *
50949854 CTACTGACTAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATT
66 CTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGATT
** * *
50949917 CGCCGTCTTTAATCTGCTCCGCTAGTGCTTAGGGAGACAAGATCTGTAATTTCCCAACTTATTCC
1 CGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTT-CCAACCTATTCC
* * * * * *
50949982 ACTACTGGCCAGGGAGATAGGACTTTTGGCTTAAATTTGCTTCCTTACACTTGCAGATAAGATT
65 ACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGATT
* * * * *
50950046 CACCGTCTTCGATCTGCTCCGCTATTGCTTAGGGATACAAGATCTATAAGTTCC
1 CGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCC
50950100 CTGATCTGTT
Statistics
Matches: 622, Mismatches: 67, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
127 44 0.07
128 301 0.48
129 276 0.44
130 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.33
Consensus pattern (128 bp):
CGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCA
CTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGATT
Found at i:50949806 original size:385 final size:385
Alignment explanation
Indices: 50949281--50950090 Score: 1174
Period size: 385 Copynumber: 2.1 Consensus size: 385
50949271 AAATCCGCCA
* * * *
50949281 TCTTTGATCTGCTCCACTATTGCGTAAGGAGATGAGATCTGATATTTCCAACCTATTCCACTGCT
1 TCTTCGATCTGCTCCGCTATTGCTTAAGGAGATAAGATCTGATATTTCCAACCTATTCCACTGCT
*
50949346 GACCAGGGAGATAGGACTTGTGGGTTAAATCTGCTTCCTTACTCTTGAAGATAAGATTCGCCGTC
66 GACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGATTCGCCGTC
* * * *
50949411 TTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTTCAACCTATTCCACTGCTGA
131 TTCAATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGCAATTTCCAACCTATTCCACTACTGA
* * *
50949476 CCAATGAGATAGGACTTGTGGCTTAAATCTACTTCCTTACTCTTGAAGATATGATTCACCGTCTT
196 CCAAGGAGATAGGACTTGTGGCTTAAATCTACTTCCTTACACTTGAAGATAAGATTCACCGTCTT
* * * *
50949541 CGATCTGCTCCACTACTGCTTATGGAGACAAGATCTGTAATTTCTCAACCTATTCCACTGCTGAC
261 CAATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTACTGAC
* * **
50949606 CAGGAATATAGGACTTGTGGCTTAAATTTGCTTCCTTACTCTTGAAGATAAGATTTGCCG
326 CAGGAAGATAGGACTTGTGGCTTAAATTTGCTTCCTTACACTTGAAGATAAGATTCACCG
* **
50949666 TCTTCGATCTGCTCCGCTACTGCTTGTGGAGATAAGATCTG-TAATTTCCCAACCTATTCCACTG
1 TCTTCGATCTGCTCCGCTATTGCTTAAGGAGATAAGATCTGAT-ATTT-CCAACCTATTCCACTG
* * * * * *
50949730 CTGACCAGGGATATAGGTCTTGTGGCTTAAAT-TGTTTTCTTACTCTTGAAGATAAGATTTGTCG
64 CTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGATTCGCCG
**
50949794 TCTTCAATCTGCTCCGCTACTGCTTAGGGAGACAATTTCTGCAATTTCCAACCTATTCCACTACT
129 TCTTCAATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGCAATTTCCAACCTATTCCACTACT
* * * *
50949859 GACTAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTC
194 GACCAAGGAGATAGGACTTGTGGCTTAAATCTACTTCCTTACACTTGAAGATAAGATTCACCGTC
* * * *
50949924 TTTAATCTGCTCCGCTAGTGCTTAGGGAGACAAGATCTGTAATTTCCCAACTTATTCCACTACTG
259 TTCAATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTACTG
* * * *
50949989 GCCAGGGAGATAGGACTTTTGGCTTAAATTTGCTTCCTTACACTTGCAGATAAGATTCACCG
324 ACCAGGAAGATAGGACTTGTGGCTTAAATTTGCTTCCTTACACTTGAAGATAAGATTCACCG
* * *
50950051 TCTTCGATCTGCTCCGCTATTGCTTAGGGATACAAGATCT
1 TCTTCGATCTGCTCCGCTATTGCTTAAGGAGATAAGATCT
50950091 ATAAGTTCCC
Statistics
Matches: 375, Mismatches: 48, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
384 1 0.00
385 329 0.88
386 45 0.12
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.33
Consensus pattern (385 bp):
TCTTCGATCTGCTCCGCTATTGCTTAAGGAGATAAGATCTGATATTTCCAACCTATTCCACTGCT
GACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGATTCGCCGTC
TTCAATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGCAATTTCCAACCTATTCCACTACTGA
CCAAGGAGATAGGACTTGTGGCTTAAATCTACTTCCTTACACTTGAAGATAAGATTCACCGTCTT
CAATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTACTGAC
CAGGAAGATAGGACTTGTGGCTTAAATTTGCTTCCTTACACTTGAAGATAAGATTCACCG
Found at i:50951314 original size:7 final size:7
Alignment explanation
Indices: 50951304--50951354 Score: 68
Period size: 7 Copynumber: 7.0 Consensus size: 7
50951294 CTATTTTTAC
50951304 TTTTTCA
1 TTTTTCA
50951311 TTTTTTCA
1 -TTTTTCA
50951319 TTTTTCA
1 TTTTTCA
50951326 TTTTTCA
1 TTTTTCA
50951333 -TTTTCA
1 TTTTTCA
50951339 TTTTTTTCA
1 --TTTTTCA
50951348 TTTTTCA
1 TTTTTCA
50951355 CATTTTTTGT
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
6 6 0.15
7 21 0.52
8 7 0.17
9 6 0.15
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTTTCA
Found at i:50951315 original size:14 final size:13
Alignment explanation
Indices: 50951296--50951343 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 13
50951286 TAGCCTCTCT
50951296 ATTTTTACTTTTTC
1 ATTTTT-CTTTTTC
50951310 ATTTTTTCATTTTTC
1 A-TTTTTC-TTTTTC
*
50951325 ATTTTTCATTTTC
1 ATTTTTCTTTTTC
50951338 ATTTTT
1 ATTTTT
50951344 TTCATTTTTC
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
13 11 0.35
14 8 0.26
15 12 0.39
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.73
Consensus pattern (13 bp):
ATTTTTCTTTTTC
Found at i:50951321 original size:22 final size:20
Alignment explanation
Indices: 50951313--50951354 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 20
50951303 CTTTTTCATT
50951313 TTTTCATTTTTCATTTTTCA
1 TTTTCATTTTTCATTTTTCA
50951333 TTTTCATTTTTTTCATTTTTCA
1 TTTTCA--TTTTTCATTTTTCA
50951355 CATTTTTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 6 0.30
22 14 0.70
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTTCATTTTTCATTTTTCA
Found at i:50951322 original size:15 final size:15
Alignment explanation
Indices: 50951304--50951354 Score: 79
Period size: 15 Copynumber: 3.5 Consensus size: 15
50951294 CTATTTTTAC
50951304 TTTTTCATTTTTTCA
1 TTTTTCATTTTTTCA
50951319 TTTTTCA-TTTTTCA
1 TTTTTCATTTTTTCA
50951333 -TTTTCATTTTTTTCA
1 TTTTTCA-TTTTTTCA
50951348 TTTTTCA
1 TTTTTCA
50951355 CATTTTTTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
13 6 0.18
14 7 0.21
15 14 0.42
16 6 0.18
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTTTCATTTTTTCA
Found at i:50951343 original size:29 final size:29
Alignment explanation
Indices: 50951296--50951354 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 29
50951286 TAGCCTCTCT
*
50951296 ATTTTTACTTTTTCATTTTTTCATTTTTC
1 ATTTTTACATTTTCATTTTTTCATTTTTC
50951325 ATTTTT-CATTTTCATTTTTTTCATTTTTC
1 ATTTTTACATTTTCA-TTTTTTCATTTTTC
50951354 A
1 A
50951355 CATTTTTTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
28 7 0.25
29 21 0.75
ACGTcount: A:0.15, C:0.14, G:0.00, T:0.71
Consensus pattern (29 bp):
ATTTTTACATTTTCATTTTTTCATTTTTC
Found at i:50952205 original size:6 final size:6
Alignment explanation
Indices: 50952194--50952233 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
50952184 CTTCTCTCTT
* * *
50952194 TTTTCA TTTTCA TTTTGA CTTTGA TTTTGA TTTTGA TTTT
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTT
50952234 TTTTGAATTG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.15, C:0.07, G:0.10, T:0.68
Consensus pattern (6 bp):
TTTTGA
Found at i:50954745 original size:31 final size:29
Alignment explanation
Indices: 50954695--50954761 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 29
50954685 TATGAATTTG
*
50954695 GAATTTAGTCTGTATTTTTTTA-TTTTTAA
1 GAATTTAGTCTGTA-TTTTTTAGATTTTAA
*
50954724 GAATTTAGTTTCTTTATTTTTTAGATTTTAA
1 GAATTTAG--TCTGTATTTTTTAGATTTTAA
50954755 -AATTTAG
1 GAATTTAG
50954762 GTTCAAATTG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
29 8 0.24
30 14 0.42
31 11 0.33
ACGTcount: A:0.27, C:0.03, G:0.10, T:0.60
Consensus pattern (29 bp):
GAATTTAGTCTGTATTTTTTAGATTTTAA
Found at i:50956347 original size:3 final size:3
Alignment explanation
Indices: 50956339--50956363 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
50956329 GTTAATACTC
50956339 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
50956364 AACCATGTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:50962330 original size:44 final size:43
Alignment explanation
Indices: 50962264--50962556 Score: 316
Period size: 44 Copynumber: 7.1 Consensus size: 43
50962254 GCGAAGCAGA
* *
50962264 TTGAAGATTGTGAGTCCTATCTCCCTGGTCAGCAGTGAAATAGG
1 TTGAAGATTGT-AATCCTATCTCCCTGGTCAGCAGTGGAATAGG
* *
50962308 TTAAAGATTGTAAGTCCTATCTCCCTGGTCAGCAAT-GAA-A--
1 TTGAAGATTGTAA-TCCTATCTCCCTGGTCAGCAGTGGAATAGG
* * *
50962348 -T--AG-GTG-AATCCTATCTCCCTGGTCAGCGGTGGAATTGG
1 TTGAAGATTGTAATCCTATCTCCCTGGTCAGCAGTGGAATAGG
50962386 TTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATA--
1 TTGAAGATTGTAA-TCCTATCTCCCTGGTCAGCAGTGGAATAGG
* *
50962428 --G--G--TG-AATCATATCTCCCTGGTCAGCAGTGGAATAAG
1 TTGAAGATTGTAATCCTATCTCCCTGGTCAGCAGTGGAATAGG
*
50962464 TTGAAGATTGTGAATCCTATCTCCCTGGTCAGTAGTGGAATAGG
1 TTGAAGATTGT-AATCCTATCTCCCTGGTCAGCAGTGGAATAGG
*
50962508 TTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAGTAGG
1 TTGAAGATTGT-AATCCTATCTCCCTGGTCAGCAGTGGAATAGG
50962552 TTGAA
1 TTGAA
50962557 AATTACAAAT
Statistics
Matches: 211, Mismatches: 17, Indels: 42
0.78 0.06 0.16
Matches are distributed among these distances:
34 47 0.22
35 7 0.03
36 4 0.02
37 2 0.01
38 2 0.01
39 2 0.01
40 2 0.01
41 2 0.01
42 5 0.02
43 5 0.02
44 133 0.63
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
TTGAAGATTGTAATCCTATCTCCCTGGTCAGCAGTGGAATAGG
Found at i:50962365 original size:34 final size:34
Alignment explanation
Indices: 50962322--50962461 Score: 127
Period size: 34 Copynumber: 3.8 Consensus size: 34
50962312 AGATTGTAAG
*
50962322 TCCTATCTCCCTGGTCAGCAATGAAATAGGTGAA
1 TCCTATCTCCCTGGTCAGCAGTGAAATAGGTGAA
* * *
50962356 TCCTATCTCCCTGGTCAGCGGTGGAATTGGTTGAAGATTGTAA
1 TCCTATCTCCCTGGTCAGCAGT-GAA----AT--AG-GTG-AA
*
50962399 GTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAA
1 -TCCTATCTCCCTGGTCAGCAGTGAAATAGGTGAA
* *
50962434 TCATATCTCCCTGGTCAGCAGTGGAATA
1 TCCTATCTCCCTGGTCAGCAGTGAAATA
50962462 AGTTGAAGAT
Statistics
Matches: 87, Mismatches: 9, Indels: 20
0.75 0.08 0.17
Matches are distributed among these distances:
34 47 0.54
35 5 0.06
36 2 0.02
37 2 0.02
39 2 0.02
41 2 0.02
42 2 0.02
43 4 0.05
44 21 0.24
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (34 bp):
TCCTATCTCCCTGGTCAGCAGTGAAATAGGTGAA
Found at i:50962368 original size:78 final size:78
Alignment explanation
Indices: 50962273--50962556 Score: 354
Period size: 78 Copynumber: 3.5 Consensus size: 78
50962263 ATTGAAGATT
* * *
50962273 GTGAGTCCTATCTCCCTGGTCAGCAGTGAAATAGGTTAAAGATTGTAAGTCCTATCTCCCTGGTC
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTC
50962338 AGCAATGAAATAG
66 AGCAATGAAATAG
* *
50962351 GTGAATCCTATCTCCCTGGTCAGCGGTGGAATTGGTTGAAGATTGTAAGTCCTATCTCCCTGGTC
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTC
* *
50962416 AGCAGTGGAATAG
66 AGCAATGAAATAG
* *
50962429 GTGAATCATATCTCCCTGGTCAGCAGTGGAATAAGTTGAAGATTGTGAA-TCCTATCTCCCTGGT
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTGGT
* *
50962493 CAGTAGTGGAATAGGTTGAAG
65 CAGCAAT-GAA-A---T--AG
*
50962514 ATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGAA
1 ---GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAA
50962557 AATTACAAAT
Statistics
Matches: 179, Mismatches: 16, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
78 134 0.75
79 4 0.02
80 1 0.01
83 1 0.01
85 2 0.01
88 37 0.21
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (78 bp):
GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTC
AGCAATGAAATAG
Found at i:50962414 original size:122 final size:121
Alignment explanation
Indices: 50962264--50962554 Score: 332
Period size: 122 Copynumber: 2.4 Consensus size: 121
50962254 GCGAAGCAGA
* * *
50962264 TTGAAGATTGTGAGTCCTATCTCCCTGGTCAGCAGTGAAATAGGTTAAAGATTGTAAGTCCTATC
1 TTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTT---G--TG-AA-TCATATC
* *
50962329 TCCCTGGTCAGCAAT-G-A-AA-T-AG-GTGAATCCTATCTCCCTGGTCAGCGGTGGAATTGG
59 TCCCTGGTCAGCAATGGAATAAGTAAGTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGG
50962386 TTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATA-G--GTGAATCATATCTCCCTGG
1 TTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGTGAATCATATCTCCCTGG
* *
50962448 TCAGCAGTGGAATAAGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGTAGTGGAATAGG
66 TCAGCAATGGAATAAG-T-AAG--TGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGG
*
50962508 TTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTG
1 TTGAAGATTGT-AAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTG
50962555 AAAATTACAA
Statistics
Matches: 147, Mismatches: 8, Indels: 25
0.82 0.04 0.14
Matches are distributed among these distances:
112 20 0.14
113 3 0.02
114 3 0.02
115 2 0.01
116 1 0.01
117 1 0.01
119 2 0.01
121 1 0.01
122 110 0.75
123 3 0.02
125 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (121 bp):
TTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGTGAATCATATCTCCCTGG
TCAGCAATGGAATAAGTAAGTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGG
Found at i:50962585 original size:88 final size:88
Alignment explanation
Indices: 50962429--50962590 Score: 227
Period size: 88 Copynumber: 1.8 Consensus size: 88
50962419 AGTGGAATAG
* *** *
50962429 GTGAATCATATCTCCCTGGTCAGCAGTGGAATAAGTTGAAGATTGTGAATCCTATCTCCCTGGTC
1 GTGAATCATATCTCCCTGGTCAGCAGTGGAATAAGTTGAAAATTACAAATCCTATCTCCCTAGTC
50962494 AGTAGTGGAATAGGTTGAAGATT
66 AGTAGTGGAATAGGTTGAAGATT
* * * *
50962517 GTGAATCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAG-
1 GTGAATCATATCTCCCTGGTCAGCAGTGGAATAAGTTGAAAATTACAAATCCTATCTCCCT-AGT
50962581 CAGTAGTGGA
65 CAGTAGTGGA
50962591 GCAGATCAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
88 63 0.98
89 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (88 bp):
GTGAATCATATCTCCCTGGTCAGCAGTGGAATAAGTTGAAAATTACAAATCCTATCTCCCTAGTC
AGTAGTGGAATAGGTTGAAGATT
Found at i:50962589 original size:44 final size:44
Alignment explanation
Indices: 50962476--50962763 Score: 137
Period size: 44 Copynumber: 6.6 Consensus size: 44
50962466 GAAGATTGTG
* * * * ***
50962476 AATCCTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTG
1 AATCTTATCTCCCTAAG-CAGTAGTGGAGTAGGTTGAAAATTACA
* * *
50962520 AATCCTATCTCCCT-GGTCAGCAGTGGAGTAGGTTGAAAATTACA
1 AATCTTATCTCCCTAAG-CAGTAGTGGAGTAGGTTGAAAATTACA
* * * ***
50962564 AATCTTATCTCCCTAAGCAGTAGTGGAGCA-GATCAAAGATGGTA
1 AATCTTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAA-ATTACA
* * * *** *
50962608 AATCTTATCTTCCC-AAGGTAGTAG-GGAAGTAGATT-TAAGCCACT
1 AATCTTATC-TCCCTAA-GCAGTAGTGG-AGTAGGTTGAAAATTACA
** * * * *
50962652 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATA
1 AATCTTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAAATTACA
* * * * *
50962696 GACCTTATATCCCTAAACAGCAGTGGAGTA-G--G-AAATTACA
1 AATCTTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAAATTACA
*
50962736 GATCTTATCTCCCTAAGCAGTAGTGGAG
1 AATCTTATCTCCCTAAGCAGTAGTGGAG
50962764 CAGATCAAAG
Statistics
Matches: 185, Mismatches: 50, Indels: 22
0.72 0.19 0.09
Matches are distributed among these distances:
40 30 0.16
41 1 0.01
43 22 0.12
44 115 0.62
45 16 0.09
46 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (44 bp):
AATCTTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAAATTACA
Found at i:50962603 original size:88 final size:88
Alignment explanation
Indices: 50962429--50962774 Score: 217
Period size: 88 Copynumber: 4.0 Consensus size: 88
50962419 AGTGGAATAG
* * * * *** * *
50962429 GTGAATCATATCTCCCTGGTCAGCAGTGGAATAAGTTGAAGATTGTGAATCCTATCTCCCT-GGT
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAG-
** * **
50962493 CAGTAGTGGAATAGGTTGAAGATT
65 CAGTAGTGGAGCAGATCAAAGATT
50962517 GTGAATCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGC
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGC
*
50962582 AGTAGTGGAGCAGATCAAAGATG
66 AGTAGTGGAGCAGATCAAAGATT
* * * * * * *** * ** *
50962605 GTAAATCTTATCTTCCCAAGGT-AGTAG-GGAAGTAGATT-TAAGCCACTAGCCTTATCTCCCTG
1 GTGAATCCTATC-TCCC-TGGTCAGCAGTGG-AGTAGGTTGAAAATTACAAATCTTATCTCCCTA
* * * **
50962667 AGCAGCAGTGGAGTAGGTTGAAGATT
63 AGCAGTAGTGGAGCAGATCAAAGATT
* * *** *
50962693 AT-AGA-CCTTATATCCCTAAACAGCAGTGGAGTA-G--G-AAATTACAGATCTTATCTCCCTAA
1 GTGA-ATCC-TATCTCCCTGGTCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAA
50962752 GCAGTAGTGGAGCAGATCAAAGA
64 GCAGTAGTGGAGCAGATCAAAGA
50962775 CAGCGAATCT
Statistics
Matches: 193, Mismatches: 56, Indels: 22
0.71 0.21 0.08
Matches are distributed among these distances:
84 34 0.18
87 14 0.07
88 126 0.65
89 16 0.08
90 3 0.02
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (88 bp):
GTGAATCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGC
AGTAGTGGAGCAGATCAAAGATT
Found at i:50962761 original size:40 final size:43
Alignment explanation
Indices: 50962654--50962763 Score: 136
Period size: 40 Copynumber: 2.6 Consensus size: 43
50962644 AAGCCACTAG
* *
50962654 CCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGA
1 CCTTATCTCCCTAAGCAGCAGTGGAGTAGG-TGAAGATTACAGA
* *
50962698 CCTTATATCCCTAAACAGCAGTGGAGTA-G-GAA-ATTACAGA
1 CCTTATCTCCCTAAGCAGCAGTGGAGTAGGTGAAGATTACAGA
* *
50962738 TCTTATCTCCCTAAGCAGTAGTGGAG
1 CCTTATCTCCCTAAGCAGCAGTGGAG
50962764 CAGATCAAAG
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
40 29 0.50
41 3 0.05
43 1 0.02
44 25 0.43
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (43 bp):
CCTTATCTCCCTAAGCAGCAGTGGAGTAGGTGAAGATTACAGA
Found at i:50962771 original size:172 final size:175
Alignment explanation
Indices: 50962481--50962853 Score: 524
Period size: 172 Copynumber: 2.1 Consensus size: 175
50962471 TTGTGAATCC
* * * * ***
50962481 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTG
1 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAGATTATGAATCCTATATCCCTAAACAGCAGTG
** *
50962545 GAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTAAA
65 GAGTAGG-TGAAAATTACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACAGCAAA
* *
50962610 TCTTATCTTCCCAAGGTAGTAGGGAAGTAGATTTAAGCCACTAGCCT
129 TCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTAAAGCCACTAGCCT
50962657 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTAT-AGA-CCTTATATCCCTAAACAGCAGT
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATGA-ATCC-TATATCCCTAAACAGCAGT
* *
50962720 GGAGTA-G-G-AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACAGCGAA
64 GGAGTAGGTGAAAATTACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACAGCAAA
*
50962782 TCTTATCTTCCTAAGGTAGTAGGGAAGCAGATTAAAGCCACTAGCCT
129 TCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTAAAGCCACTAGCCT
*
50962829 TATCTCCCTGAGCAACAGTGGAGTA
1 TATCTCCCTGAGCAGCAGTGGAGTA
50962854 TTTTTTATAT
Statistics
Matches: 178, Mismatches: 16, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
172 117 0.66
173 1 0.01
175 4 0.02
176 55 0.31
177 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (175 bp):
TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATGAATCCTATATCCCTAAACAGCAGTGG
AGTAGGTGAAAATTACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACAGCAAATC
TTATCTTCCCAAGGTAGTAGGGAAGCAGATTAAAGCCACTAGCCT
Found at i:50962903 original size:20 final size:20
Alignment explanation
Indices: 50962852--50962904 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 20
50962842 AACAGTGGAG
*
50962852 TATTTTTTATATTTTTAAAT
1 TATTTTATATATTTTTAAAT
* * ***
50962872 TATTATAAATATTTTTTTGT
1 TATTTTATATATTTTTAAAT
50962892 TATTTTATATATT
1 TATTTTATATATT
50962905 CAATTGTTTT
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (20 bp):
TATTTTATATATTTTTAAAT
Found at i:50963076 original size:12 final size:12
Alignment explanation
Indices: 50963057--50963090 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
50963047 CATAATTTTC
50963057 ACATACATATAT
1 ACATACATATAT
*
50963069 ATATACATATAT
1 ACATACATATAT
50963081 ACATACATAT
1 ACATACATAT
50963091 TTTAATTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (12 bp):
ACATACATATAT
Found at i:50963234 original size:23 final size:22
Alignment explanation
Indices: 50963200--50963244 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
50963190 CATACTCATA
*
50963200 TATTTTTATTATATATTGTAAT
1 TATTATTATTATATATTGTAAT
*
50963222 TATTATTATTTATATCTTGTAAT
1 TATTATTA-TTATATATTGTAAT
50963245 CTATATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.62
Consensus pattern (22 bp):
TATTATTATTATATATTGTAAT
Found at i:50965025 original size:16 final size:16
Alignment explanation
Indices: 50965004--50965034 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50964994 CATGTTGGAG
50965004 CATATAAATTTGAAAC
1 CATATAAATTTGAAAC
*
50965020 CATATATATTTGAAA
1 CATATAAATTTGAAA
50965035 ACTTTTTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.35
Consensus pattern (16 bp):
CATATAAATTTGAAAC
Found at i:50965207 original size:26 final size:24
Alignment explanation
Indices: 50965178--50965227 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
50965168 ATTTTTTTTA
*
50965178 AAATTATTATAATTCTTTAAAAATAT
1 AAATT-TTAGAATT-TTTAAAAATAT
*
50965204 AAATTTTAGAATTTTTATAAATAT
1 AAATTTTAGAATTTTTAAAAATAT
50965228 TTTGAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 10 0.45
25 7 0.32
26 5 0.23
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (24 bp):
AAATTTTAGAATTTTTAAAAATAT
Found at i:50965236 original size:19 final size:19
Alignment explanation
Indices: 50965201--50965256 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
50965191 TCTTTAAAAA
*
50965201 TATAAAT-TTTAGAATTTT
1 TATAAATATTTTGAATTTT
50965219 TATAAATATTTTGAA-TTT
1 TATAAATATTTTGAATTTT
*
50965237 TAAAAATTATTTTG-ATTTT
1 TATAAA-TATTTTGAATTTT
50965256 T
1 T
50965257 TTTTTGTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
18 16 0.48
19 17 0.52
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:50965238 original size:18 final size:18
Alignment explanation
Indices: 50965201--50965255 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
50965191 TCTTTAAAAA
*
50965201 TATAAAT-TTTAGAATTTT
1 TATAAATATTTTGAA-TTT
50965219 TATAAATATTTTGAATTT
1 TATAAATATTTTGAATTT
*
50965237 TAAAAATTATTTTG-ATTT
1 TATAAA-TATTTTGAATTT
50965255 T
1 T
50965256 TTTTTTGTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 20 0.61
19 13 0.39
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (18 bp):
TATAAATATTTTGAATTT
Found at i:50971900 original size:27 final size:27
Alignment explanation
Indices: 50971870--50972035 Score: 147
Period size: 27 Copynumber: 6.1 Consensus size: 27
50971860 CTAATATTTA
*
50971870 TAAAATGACCGTAATACCCCTGTAGGG
1 TAAAATGACCGTAATACCCCTATAGGG
* * * *
50971897 TAAAATGACC-AAAAAACCTTCATAGGG
1 TAAAATGACCGTAATACCCCT-ATAGGG
* * *
50971924 TAAAATGATCGTAATGCCCCTGTAGGG
1 TAAAATGACCGTAATACCCCTATAGGG
**
50971951 TAAAATGATTGTAATA-CCCTCATAGGG
1 TAAAATGACCGTAATACCCCT-ATAGGG
* * *
50971978 TTAAATGACCGAAATACCCCTATAAGG
1 TAAAATGACCGTAATACCCCTATAGGG
* ** *
50972005 TAAAATGACCATAATGTCCCTAGAGGG
1 TAAAATGACCGTAATACCCCTATAGGG
50972032 TAAA
1 TAAA
50972036 TAACTATTTT
Statistics
Matches: 108, Mismatches: 27, Indels: 8
0.76 0.19 0.06
Matches are distributed among these distances:
26 10 0.09
27 89 0.82
28 9 0.08
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (27 bp):
TAAAATGACCGTAATACCCCTATAGGG
Found at i:50972007 original size:81 final size:81
Alignment explanation
Indices: 50971870--50972035 Score: 185
Period size: 81 Copynumber: 2.0 Consensus size: 81
50971860 CTAATATTTA
* * * * *
50971870 TAAAATGACCGTAATACCCCTGTAGGGTAAAATGACCAAAAAACCTTCATAGGGTAAAATGATCG
1 TAAAATGACCGTAATACCCCTATAGGGTAAAATGACCAAAAAACCCTCATAAGGTAAAATGACCA
50971935 TAATGCCCCT-GTAGGG
66 TAATGCCCCTAG-AGGG
** * * *
50971951 TAAAATGATTGTAATA-CCCTCATAGGGTTAAATGACCGAAATACCC-CTATAAGGTAAAATGAC
1 TAAAATGACCGTAATACCCCT-ATAGGGTAAAATGACCAAAAAACCCTC-ATAAGGTAAAATGAC
*
50972014 CATAATGTCCCTAGAGGG
64 CATAATGCCCCTAGAGGG
50972032 TAAA
1 TAAA
50972036 TAACTATTTT
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
80 5 0.07
81 65 0.92
82 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (81 bp):
TAAAATGACCGTAATACCCCTATAGGGTAAAATGACCAAAAAACCCTCATAAGGTAAAATGACCA
TAATGCCCCTAGAGGG
Found at i:50972032 original size:54 final size:54
Alignment explanation
Indices: 50971872--50972019 Score: 188
Period size: 54 Copynumber: 2.7 Consensus size: 54
50971862 AATATTTATA
* * * *
50971872 AAATGACCGTAATACCCCTGTAGGGTAAAATGACCAAAAAACCTTCATAGGGTA
1 AAATGACCGTAATACCCCTGTAGGGTAAAATGACCATAATACCCTCATAGGGTT
* * ***
50971926 AAATGATCGTAATGCCCCTGTAGGGTAAAATGATTGTAATACCCTCATAGGGTT
1 AAATGACCGTAATACCCCTGTAGGGTAAAATGACCATAATACCCTCATAGGGTT
* * *
50971980 AAATGACCGAAATACCCCTATAAGGTAAAATGACCATAAT
1 AAATGACCGTAATACCCCTGTAGGGTAAAATGACCATAAT
50972020 GTCCCTAGAG
Statistics
Matches: 77, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 77 1.00
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (54 bp):
AAATGACCGTAATACCCCTGTAGGGTAAAATGACCATAATACCCTCATAGGGTT
Found at i:50972129 original size:24 final size:24
Alignment explanation
Indices: 50972058--50972166 Score: 119
Period size: 24 Copynumber: 4.5 Consensus size: 24
50972048 CCATCGAGTG
* *
50972058 TAAATGATTGATTTGTCTGTGATG
1 TAAATGACTGATTTGTCTGTGATT
* *
50972082 TAAATGACTAATTTATCTGTGATT
1 TAAATGACTGATTTGTCTGTGATT
50972106 TAAATGACTGATTTGTCTGTGATT
1 TAAATGACTGATTTGTCTGTGATT
*** * *
50972130 GGTATGATTGATTTGTGTGTGATT
1 TAAATGACTGATTTGTCTGTGATT
**
50972154 TGTATGACTGATT
1 TAAATGACTGATT
50972167 CTGAGCATGG
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 72 1.00
ACGTcount: A:0.25, C:0.06, G:0.23, T:0.47
Consensus pattern (24 bp):
TAAATGACTGATTTGTCTGTGATT
Found at i:50972300 original size:27 final size:27
Alignment explanation
Indices: 50972248--50972300 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
50972238 TGGTGGTTCT
**
50972248 GCCACAATCACTGTTACTAGTGGCTTG
1 GCCACAATCACTGTTACTAGCAGCTTG
*
50972275 GCCACATAT-ACTGTTACTGGCAGCTT
1 GCCACA-ATCACTGTTACTAGCAGCTT
50972301 TGCTGCGACA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 20 0.91
28 2 0.09
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (27 bp):
GCCACAATCACTGTTACTAGCAGCTTG
Found at i:50972393 original size:32 final size:32
Alignment explanation
Indices: 50972370--50972544 Score: 174
Period size: 32 Copynumber: 5.5 Consensus size: 32
50972360 ATAGTACTAC
*
50972370 TACTGATGGCTTTGTACCGATCATATTACCGT
1 TACTGATGGCTTTGTACCGATCATATCACCGT
* * *
50972402 TA-TCGATGGCTGTGTGCTGATCATATCACCGT
1 TACT-GATGGCTTTGTACCGATCATATCACCGT
**
50972434 TACTGATGG-TTGTGTACCGATCATATCATTGT
1 TACTGATGGCTT-TGTACCGATCATATCACCGT
* * * *
50972466 TACTGATGGCTTTGTACTGATCATGTTACCAT
1 TACTGATGGCTTTGTACCGATCATATCACCGT
* * ** * *
50972498 TACTGATGGCTGTGTGCCGATTGTATCACTGC
1 TACTGATGGCTTTGTACCGATCATATCACCGT
50972530 TACTGATGGCTTTGT
1 TACTGATGGCTTTGT
50972545 GCCAATGATA
Statistics
Matches: 113, Mismatches: 26, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
31 2 0.02
32 108 0.96
33 3 0.03
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.38
Consensus pattern (32 bp):
TACTGATGGCTTTGTACCGATCATATCACCGT
Found at i:50972541 original size:64 final size:64
Alignment explanation
Indices: 50972335--50972544 Score: 201
Period size: 64 Copynumber: 3.3 Consensus size: 64
50972325 TTTGCTGTGA
* * * * * *
50972335 TGCTACTGATGGCTTTGT-GTCAATCATAGT-ACTACTACTGATGGCTTTGTACCGATCATATTA
1 TGCTACTGATGGCTTTGTACT-GATCATA-TCACCATTACTGATGGCTGTGTACCGATCATATCA
50972398 C
64 C
* * * * * * *
50972399 CGTTA-TCGATGGCTGTGTGCTGATCATATCACCGTTACTGATGGTTGTGTACCGATCATATCAT
1 TGCTACT-GATGGCTTTGTACTGATCATATCACCATTACTGATGGCTGTGTACCGATCATATCAC
* * * * **
50972463 TGTTACTGATGGCTTTGTACTGATCATGTTACCATTACTGATGGCTGTGTGCCGATTGTATCAC
1 TGCTACTGATGGCTTTGTACTGATCATATCACCATTACTGATGGCTGTGTACCGATCATATCAC
50972527 TGCTACTGATGGCTTTGT
1 TGCTACTGATGGCTTTGT
50972545 GCCAATGATA
Statistics
Matches: 118, Mismatches: 24, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
63 2 0.02
64 114 0.97
65 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (64 bp):
TGCTACTGATGGCTTTGTACTGATCATATCACCATTACTGATGGCTGTGTACCGATCATATCAC
Found at i:50972546 original size:32 final size:32
Alignment explanation
Indices: 50972335--50972547 Score: 162
Period size: 32 Copynumber: 6.7 Consensus size: 32
50972325 TTTGCTGTGA
* *
50972335 TGCTACTGATGGCTTTGTGTCAATCATAGT-AC
1 TGCTACTGATGGCTTTGTGCCGATCATA-TCAC
* * *
50972367 TACTACTGATGGCTTTGTACCGATCATATTAC
1 TGCTACTGATGGCTTTGTGCCGATCATATCAC
* * * *
50972399 CGTTA-TCGATGGCTGTGTGCTGATCATATCAC
1 TGCTACT-GATGGCTTTGTGCCGATCATATCAC
* * * *
50972431 CGTTACTGATGG-TTGTGTACCGATCATATCAT
1 TGCTACTGATGGCTT-TGTGCCGATCATATCAC
* * * * *
50972463 TGTTACTGATGGCTTTGTACTGATCATGTTAC
1 TGCTACTGATGGCTTTGTGCCGATCATATCAC
*** * **
50972495 CATTACTGATGGCTGTGTGCCGATTGTATCAC
1 TGCTACTGATGGCTTTGTGCCGATCATATCAC
50972527 TGCTACTGATGGCTTTGTGCC
1 TGCTACTGATGGCTTTGTGCC
50972548 AATGATATTA
Statistics
Matches: 143, Mismatches: 33, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
31 3 0.02
32 137 0.96
33 3 0.02
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.38
Consensus pattern (32 bp):
TGCTACTGATGGCTTTGTGCCGATCATATCAC
Found at i:50979505 original size:24 final size:24
Alignment explanation
Indices: 50979484--50979540 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
50979474 AAGATTTACT
*
50979484 ATTTATTAGTATAATATATTTAGC
1 ATTTATTAGCATAATATATTTAGC
*
50979508 ATTTATTAGCATAATATATTTAAC
1 ATTTATTAGCATAATATATTTAGC
*
50979532 ATTGATTAG
1 ATTTATTAG
50979541 AATTAGGTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.39, C:0.05, G:0.09, T:0.47
Consensus pattern (24 bp):
ATTTATTAGCATAATATATTTAGC
Found at i:50983403 original size:16 final size:16
Alignment explanation
Indices: 50983382--50983412 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50983372 GACATGTGTC
50983382 TTTTTTTAAATATTTA
1 TTTTTTTAAATATTTA
*
50983398 TTTTTTTTAATATTT
1 TTTTTTTAAATATTT
50983413 TACTATACCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTTTTTAAATATTTA
Found at i:50997728 original size:8 final size:8
Alignment explanation
Indices: 50997715--50997741 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
50997705 ATTTTTTGTG
50997715 TAATTTTA
1 TAATTTTA
50997723 TAATTTTA
1 TAATTTTA
50997731 TAATTTTA
1 TAATTTTA
50997739 TAA
1 TAA
50997742 AATAAATGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
TAATTTTA
Found at i:51008276 original size:18 final size:17
Alignment explanation
Indices: 51008255--51008290 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
51008245 AAAATCACAA
51008255 AGACATGCAAAAAAGCAG
1 AGAC-TGCAAAAAAGCAG
*
51008273 AGACTGCTAAAAAGCAG
1 AGACTGCAAAAAAGCAG
51008290 A
1 A
51008291 AAAATACGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.53, C:0.17, G:0.22, T:0.08
Consensus pattern (17 bp):
AGACTGCAAAAAAGCAG
Found at i:51009482 original size:30 final size:29
Alignment explanation
Indices: 51009446--51009525 Score: 99
Period size: 31 Copynumber: 2.7 Consensus size: 29
51009436 ATTTTAAATT
51009446 TTCAAAAGTATAGGGACTAAAATTGAACAA
1 TTCAAAAGTATAGGGACTAAAA-TGAACAA
* *
51009476 TTCAAAAAGTACAGGGACTAAAATGATCAA
1 TTC-AAAAGTATAGGGACTAAAATGAACAA
* *
51009506 AT-AAAAGTATATGGACTAAA
1 TTCAAAAGTATAGGGACTAAA
51009526 TCTATAAAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
28 16 0.36
30 10 0.23
31 18 0.41
ACGTcount: A:0.51, C:0.10, G:0.16, T:0.23
Consensus pattern (29 bp):
TTCAAAAGTATAGGGACTAAAATGAACAA
Found at i:51010553 original size:17 final size:17
Alignment explanation
Indices: 51010531--51010580 Score: 84
Period size: 17 Copynumber: 2.9 Consensus size: 17
51010521 TCTCAGATTT
51010531 TGATACTCATATCTTTC
1 TGATACTCATATCTTTC
51010548 TGATAC-CTATATCTTTC
1 TGATACTC-ATATCTTTC
51010565 TGATACTCATATCTTT
1 TGATACTCATATCTTT
51010581 GACTTTCCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
16 1 0.03
17 29 0.94
18 1 0.03
ACGTcount: A:0.24, C:0.22, G:0.06, T:0.48
Consensus pattern (17 bp):
TGATACTCATATCTTTC
Found at i:51011043 original size:36 final size:35
Alignment explanation
Indices: 51011003--51011076 Score: 87
Period size: 36 Copynumber: 2.1 Consensus size: 35
51010993 TTTTAGAATG
* *
51011003 TTTGAA-ATGTAAATTTATATTTTGTAAAATATAATT
1 TTTGAATATATAAA-TT-TATTTTGTAAAATAAAATT
*
51011039 TTTGAATTATATACATTTATTTTGTAAAATAAAATT
1 TTTGAA-TATATAAATTTATTTTGTAAAATAAAATT
51011075 TT
1 TT
51011077 CATTAAATCA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
36 26 0.79
37 2 0.06
38 5 0.15
ACGTcount: A:0.41, C:0.01, G:0.07, T:0.51
Consensus pattern (35 bp):
TTTGAATATATAAATTTATTTTGTAAAATAAAATT
Found at i:51011217 original size:12 final size:11
Alignment explanation
Indices: 51011199--51011224 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
51011189 AGAAAGTTTA
51011199 GAAAAAAAAAG
1 GAAAAAAAAAG
51011210 GAAAAAAAAAG
1 GAAAAAAAAAG
51011221 GAAA
1 GAAA
51011225 GTGGGAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (11 bp):
GAAAAAAAAAG
Found at i:51011963 original size:22 final size:24
Alignment explanation
Indices: 51011922--51011968 Score: 71
Period size: 22 Copynumber: 2.0 Consensus size: 24
51011912 AGACATTAAA
*
51011922 ATTTTATGTTAAAATGGTTATTAT
1 ATTTTATGTTAAAATAGTTATTAT
51011946 ATTTT-TGTT-AAATAGTTATTAT
1 ATTTTATGTTAAAATAGTTATTAT
51011968 A
1 A
51011969 CGCAAATATG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 13 0.59
23 4 0.18
24 5 0.23
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.55
Consensus pattern (24 bp):
ATTTTATGTTAAAATAGTTATTAT
Found at i:51014284 original size:39 final size:39
Alignment explanation
Indices: 51014230--51014346 Score: 139
Period size: 39 Copynumber: 3.0 Consensus size: 39
51014220 TAATTTAGTT
* *
51014230 TGAGTCTTTAATTATGTTATAATTTGAACATCATTAATA
1 TGAGTTTTTAATTATGTCATAATTTGAACATCATTAATA
* *
51014269 TGAGTTTTTAATTATGTCATAATCTGAACAACATTAATA
1 TGAGTTTTTAATTATGTCATAATTTGAACATCATTAATA
* * *
51014308 --AGTGTTTTAATTATGTCATAGTTTAGGACATCTTTAATA
1 TGAGT-TTTTAATTATGTCATAATTT-GAACATCATTAATA
51014347 CATGTTTTAA
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
37 3 0.04
38 18 0.27
39 46 0.69
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.44
Consensus pattern (39 bp):
TGAGTTTTTAATTATGTCATAATTTGAACATCATTAATA
Found at i:51021368 original size:13 final size:14
Alignment explanation
Indices: 51021344--51021372 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
51021334 AATTTCAAAC
51021344 TTTTAAATTGAAAT
1 TTTTAAATTGAAAT
51021358 TTTTAAA-TGAAAT
1 TTTTAAATTGAAAT
51021371 TT
1 TT
51021373 GTCTCCAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (14 bp):
TTTTAAATTGAAAT
Found at i:51022059 original size:78 final size:78
Alignment explanation
Indices: 51021973--51022126 Score: 299
Period size: 78 Copynumber: 2.0 Consensus size: 78
51021963 CTATAACATT
51021973 TAAATTTTGACAAACAAACGAAAATATTATAGAAAGGGTTAATTGTATAATCATCTTTTATTAAC
1 TAAATTTTGACAAACAAACGAAAATATTATAGAAAGGGTTAATTGTATAATCATCTTTTATTAAC
51022038 AACTATCATTATC
66 AACTATCATTATC
*
51022051 TAAATTTTGACAAACAAACGAAAATATTATAGAAAGGGTTAATTGTATAATCATCTTTTGTTAAC
1 TAAATTTTGACAAACAAACGAAAATATTATAGAAAGGGTTAATTGTATAATCATCTTTTATTAAC
51022116 AACTATCATTA
66 AACTATCATTA
51022127 AACATATAAG
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 75 1.00
ACGTcount: A:0.44, C:0.11, G:0.10, T:0.36
Consensus pattern (78 bp):
TAAATTTTGACAAACAAACGAAAATATTATAGAAAGGGTTAATTGTATAATCATCTTTTATTAAC
AACTATCATTATC
Found at i:51026716 original size:11 final size:11
Alignment explanation
Indices: 51026700--51026730 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
51026690 GTATTAAGCA
51026700 AAAATAAAACG
1 AAAATAAAACG
*
51026711 AAAATAAAATG
1 AAAATAAAACG
51026722 AAAATAAAA
1 AAAATAAAA
51026731 AACCGACTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.77, C:0.03, G:0.06, T:0.13
Consensus pattern (11 bp):
AAAATAAAACG
Found at i:51026959 original size:13 final size:13
Alignment explanation
Indices: 51026941--51026974 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
51026931 GGTGACCGTG
*
51026941 GAGTGCGCGCGAC
1 GAGTGCGAGCGAC
51026954 GAGTGCGGAGCGAC
1 GAGTGC-GAGCGAC
51026968 GAGTGCG
1 GAGTGCG
51026975 GCGTGTGGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.18, C:0.24, G:0.50, T:0.09
Consensus pattern (13 bp):
GAGTGCGAGCGAC
Found at i:51026968 original size:14 final size:14
Alignment explanation
Indices: 51026949--51026975 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
51026939 TGGAGTGCGC
51026949 GCGACGAGTGCGGA
1 GCGACGAGTGCGGA
51026963 GCGACGAGTGCGG
1 GCGACGAGTGCGG
51026976 CGTGTGGGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.22, G:0.52, T:0.07
Consensus pattern (14 bp):
GCGACGAGTGCGGA
Found at i:51027690 original size:44 final size:45
Alignment explanation
Indices: 51027601--51027693 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 45
51027591 AGACTTGTAA
* **
51027601 CTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTACTTT
1 CTTCGATCTACTTCACCACCAATACAGGAAGACAAGATCTACTTT
* * *
51027646 CTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGCTTT
1 CTTCGATCTACTTCACCACCAATACAGGAAGACAAGATCTACTTT
51027690 CTTC
1 CTTC
51027694 AATCAATTCG
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 27 0.64
45 15 0.36
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (45 bp):
CTTCGATCTACTTCACCACCAATACAGGAAGACAAGATCTACTTT
Found at i:51027816 original size:44 final size:44
Alignment explanation
Indices: 51027740--51028094 Score: 184
Period size: 44 Copynumber: 8.0 Consensus size: 44
51027730 GGCTTCAATG
** * * *
51027740 TACTCCACTGCAACTTCAGGGAGGTAAAATCTGTCATCTTTGATA
1 TACTCCACTGCTGC-TCAGGGAGATAAGATCTGTCATCTTTGATC
* * * * *
51027785 TGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAATC
1 TACTCCACTGCTGCTCAGGGAGATAAGATCTGTCATCTTTGATC
* * * * ** *
51027829 TATTCCACTGCTGCCCAGGGAGATAGAGTTACTG---GCTTCAATG
1 TACTCCACTGCTGCTCAGGGAGATA-AGAT-CTGTCATCTTTGATC
** * * *
51027872 TACTCCACTGCAACCTCAGGGAGGTAAAATCTGCCATCTTTGATC
1 TACTCCACTGC-TGCTCAGGGAGATAAGATCTGTCATCTTTGATC
* * * * * *
51027917 TGCTCCACTACTGCTTAGAGAGATAAGATCTGTTATCTTTAATC
1 TACTCCACTGCTGCTCAGGGAGATAAGATCTGTCATCTTTGATC
* * * ** *
51027961 TATTCCACTGCTGCCCAGGGAGA-CAGAT-T-T-ACTGGCTTCAATG
1 TACTCCACTGCTGCTCAGGGAGATAAGATCTGTCA-T--CTTTGATC
** * * * *
51028004 TACTCCACTGCAACCTCAGGGAGGTAAAATCTGCCGTCTTTGATC
1 TACTCCACTGC-TGCTCAGGGAGATAAGATCTGTCATCTTTGATC
* * * * *
51028049 TGCTCCACTACTGCTTAGGGAGATAAGATCTGTTATCTTTAATC
1 TACTCCACTGCTGCTCAGGGAGATAAGATCTGTCATCTTTGATC
51028093 TA
1 TA
51028095 TTCAACTGTA
Statistics
Matches: 222, Mismatches: 74, Indels: 29
0.68 0.23 0.09
Matches are distributed among these distances:
40 1 0.00
41 2 0.01
42 4 0.02
43 38 0.17
44 128 0.58
45 44 0.20
46 4 0.02
47 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (44 bp):
TACTCCACTGCTGCTCAGGGAGATAAGATCTGTCATCTTTGATC
Found at i:51027955 original size:132 final size:132
Alignment explanation
Indices: 51027678--51028102 Score: 683
Period size: 132 Copynumber: 3.2 Consensus size: 132
51027668 ACATGAAGAC
* * * * * *
51027678 AAGATCTGCTT-TCTTCAATCAATTCGACTGCCGACC-GGGGGATAGAATTACTGGCTTCAATGT
1 AAGATCTG-TTATCTTTAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGT
* * *
51027741 ACTCCACTGCAACTTCAGGGAGGTAAAATCTGTCATCTTTGATATGCTCCACTACTGCTTAGGGA
65 ACTCCACTGCAACCTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGA
51027806 GAT
130 GAT
* *
51027809 AAGATCTGTAATCTTTAATCTATTCCACTGCTGCCCAGGGAGATAGAGTTACTGGCTTCAATGTA
1 AAGATCTGTTATCTTTAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTA
*
51027874 CTCCACTGCAACCTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGAGAG
66 CTCCACTGCAACCTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAG
51027939 AT
131 AT
* *
51027941 AAGATCTGTTATCTTTAATCTATTCCACTGCTGCCCAGGGAGACAGATTTACTGGCTTCAATGTA
1 AAGATCTGTTATCTTTAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTA
*
51028006 CTCCACTGCAACCTCAGGGAGGTAAAATCTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAG
66 CTCCACTGCAACCTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAG
51028071 AT
131 AT
*
51028073 AAGATCTGTTATCTTTAATCTATTCAACTG
1 AAGATCTGTTATCTTTAATCTATTCCACTG
51028103 TAATGTCGGG
Statistics
Matches: 274, Mismatches: 18, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
130 1 0.00
131 28 0.10
132 245 0.89
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.31
Consensus pattern (132 bp):
AAGATCTGTTATCTTTAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTA
CTCCACTGCAACCTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAG
AT
Done.