Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 164 of 240
Found at i:51282253 original size:21 final size:21
Alignment explanation
Indices: 51282227--51282266 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
51282217 CAACAACTTA
*
51282227 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCGACAGCGAGGG
*
51282248 AAGCAGAGGCTACAGCGAG
1 AAGCAGAGGCGACAGCGAG
51282267 ACAAGGAGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.20, G:0.45, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCGACAGCGAGGG
Found at i:51282841 original size:85 final size:84
Alignment explanation
Indices: 51282747--51283037 Score: 369
Period size: 85 Copynumber: 3.4 Consensus size: 84
51282737 GTTTGTGAAA
* * * *
51282747 TAAGTGCCGCTAAAGAACACT-ACTTTTAGCGGCATTTT-TGACCAAGCGCCGCTATAGAACATT
1 TAAGCGCCGCTAAAGAACA-TGA-TTTTAGCGGCATTTTCT-TCCAAGCGCCGCTAAAGAACATG
51282810 ACTTTTAGCGGCGTTTTCTTCC
63 ACTTTTAGCGGCGTTTTCTTCC
* * *
51282832 TAAGCGCCGCTAAAGAAGATGATTTTTAGCGGCGTTTTCTTCCTAAGCGCCGCTAAATAACATGA
1 TAAGCGCCGCTAAAGAACATGA-TTTTAGCGGCATTTTCTTCC-AAGCGCCGCTAAAGAACATGA
51282897 -TCTTTAGCGGCGTTTTCTT-C
64 CT-TTTAGCGGCGTTTTCTTCC
*
51282917 AAAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTCTTCCAAGCGCCGCTAAAGAACATGAC
1 TAAGCGCCGCTAAAGAACATGAT-TTTAGCGGCATTTTCTTCCAAGCGCCGCTAAAGAACATGAC
*
51282982 CTTTAGCGGCG-TTT-TTCC
65 TTTTAGCGGCGTTTTCTTCC
* *
51283000 CAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTT
1 TAAGCGCCGCTAAAGAACATGAT-TTTAGCGGCATTTT
51283038 TTTCAGTTAG
Statistics
Matches: 184, Mismatches: 15, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
82 2 0.01
83 40 0.22
84 32 0.17
85 74 0.40
86 36 0.20
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (84 bp):
TAAGCGCCGCTAAAGAACATGATTTTAGCGGCATTTTCTTCCAAGCGCCGCTAAAGAACATGACT
TTTAGCGGCGTTTTCTTCC
Found at i:51282859 original size:43 final size:43
Alignment explanation
Indices: 51282747--51283037 Score: 375
Period size: 42 Copynumber: 6.9 Consensus size: 43
51282737 GTTTGTGAAA
* * *
51282747 TAAGTGCCGCTAAAGAACACT-A-CTTTTAGCGGCATTTT-TGACC
1 TAAGCGCCGCTAAAGAACA-TGATC-TTTAGCGGCGTTTTCT-TCC
* *
51282790 -AAGCGCCGCTATAGAACATTA-CTTTTAGCGGCGTTTTCTTCC
1 TAAGCGCCGCTAAAGAACATGATC-TTTAGCGGCGTTTTCTTCC
* *
51282832 TAAGCGCCGCTAAAGAAGATGATTTTTAGCGGCGTTTTCTTCC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCTTCC
*
51282875 TAAGCGCCGCTAAATAACATGATCTTTAGCGGCGTTTTCTT-C
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCTTCC
* *
51282917 AAAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTCTTCC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCTTCC
*
51282960 -AAGCGCCGCTAAAGAACATGACCTTTAGCGGCG-TTT-TTCC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCTTCC
*
51283000 CAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTT
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTT
51283038 TTTCAGTTAG
Statistics
Matches: 224, Mismatches: 17, Indels: 15
0.88 0.07 0.06
Matches are distributed among these distances:
40 4 0.02
41 36 0.16
42 107 0.48
43 77 0.34
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (43 bp):
TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCTTCC
Found at i:51282924 original size:128 final size:125
Alignment explanation
Indices: 51282752--51283042 Score: 383
Period size: 128 Copynumber: 2.3 Consensus size: 125
51282742 TGAAATAAGT
* * * * *
51282752 GCCGCTAAAGAACACT-A-CTTTTAGCGGCATTTT-TGACCAAGCGCCGCTATAGAACATTA-CT
1 GCCGCTAAAGAACA-TGATC-TTTAGCGGCGTTTTCT-TCAAAGCGCCGCTAAAGAACATGATC-
* * ** *
51282813 TTTAGCGGCGTTTTCTTCCTAAGCGCCGCTAAAGAAGATGATTTTTAGCGGCGTTTTCTTCCTAA
62 TTTAGCGGCATTTTCTTCC-AAGCGCCGCTAAAGAACATGACCTTTAGCGGCG-TTT-TTCCCAA
51282878 GC
124 GC
*
51282880 GCCGCTAAATAACATGATCTTTAGCGGCGTTTTCTTCAAAGCGCCGCTAAAGAACATGATCTTTA
1 GCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCTTCAAAGCGCCGCTAAAGAACATGATCTTTA
51282945 GCGGCATTTTCTTCCAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTTTCCCAAGC
66 GCGGCATTTTCTTCCAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTTTCCCAAGC
*
51283005 GCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCA
1 GCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCTTCA
51283043 GTTAGCGACG
Statistics
Matches: 146, Mismatches: 13, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
125 44 0.30
126 3 0.02
127 31 0.21
128 65 0.45
129 3 0.02
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (125 bp):
GCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCTTCAAAGCGCCGCTAAAGAACATGATCTTTA
GCGGCATTTTCTTCCAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTTTCCCAAGC
Found at i:51283222 original size:21 final size:21
Alignment explanation
Indices: 51283198--51283238 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
51283188 TAAATCTTAA
51283198 AGATACTAATAATATAATAAT
1 AGATACTAATAATATAATAAT
* *
51283219 AGATACTAATACTATCATAA
1 AGATACTAATAATATAATAA
51283239 CAATAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.32
Consensus pattern (21 bp):
AGATACTAATAATATAATAAT
Found at i:51289418 original size:12 final size:11
Alignment explanation
Indices: 51289397--51289469 Score: 75
Period size: 11 Copynumber: 6.9 Consensus size: 11
51289387 ACCAAAAATT
51289397 TATTTTAAAAA
1 TATTTTAAAAA
51289408 TATTTTAAAAA
1 TATTTTAAAAA
51289419 TATTTT--AAA
1 TATTTTAAAAA
*
51289428 -A--TTAAAATT
1 TATTTTAAAA-A
*
51289437 TATTTTAAAATT
1 TATTTTAAAA-A
51289449 TATTTTAAAAA
1 TATTTTAAAAA
51289460 TATTTTAAAA
1 TATTTTAAAA
51289470 TTAAAAAATA
Statistics
Matches: 54, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
6 2 0.04
8 3 0.06
9 3 0.06
10 1 0.02
11 27 0.50
12 18 0.33
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:51289497 original size:39 final size:39
Alignment explanation
Indices: 51289408--51289516 Score: 164
Period size: 39 Copynumber: 2.7 Consensus size: 39
51289398 ATTTTAAAAA
* ***
51289408 TATTTTAAAAATATTTTAAAATTAAAATTTATTTTAAAATT
1 TATTTTAAAAATATTTTAAAATTAAAA--AATAAAAAAATT
51289449 TATTTTAAAAATATTTTAAAATTAAAAAATAAAAAAATT
1 TATTTTAAAAATATTTTAAAATTAAAAAATAAAAAAATT
51289488 TATTTTAAAAATATTTTAAAATTAAAAAA
1 TATTTTAAAAATATTTTAAAATTAAAAAA
51289517 ATTTAAAAAA
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
39 37 0.58
41 27 0.42
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (39 bp):
TATTTTAAAAATATTTTAAAATTAAAAAATAAAAAAATT
Found at i:51289514 original size:17 final size:17
Alignment explanation
Indices: 51289492--51289538 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
51289482 AAAATTTATT
*
51289492 TTAAAAATATTTTAAAA
1 TTAAAAATATTTAAAAA
*
51289509 TTAAAAAAATTTAAAAA
1 TTAAAAATATTTAAAAA
* *
51289526 ATAAATATATTTA
1 TTAAAAATATTTA
51289539 TTATAACGGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TTAAAAATATTTAAAAA
Found at i:51289523 original size:49 final size:51
Alignment explanation
Indices: 51289431--51289540 Score: 136
Period size: 49 Copynumber: 2.2 Consensus size: 51
51289421 TTTTAAAATT
* ***
51289431 AAAATTTATTTTAAAATTTATTTTAAAAATATTTTAAAATTAAAAAATAAA
1 AAAATTTATTTTAAAATATATTTTAAAAATATAAAAAAATTAAAAAATAAA
51289482 AAAATTTATTTTAAAA-ATATTTT-AAAAT-TAAAAAAATTTAAAAAATAAA
1 AAAATTTATTTTAAAATATATTTTAAAAATATAAAAAAA-TTAAAAAATAAA
* *
51289531 TATATTTATT
1 AAAATTTATT
51289541 ATAACGGGCC
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
48 5 0.10
49 25 0.48
50 6 0.12
51 16 0.31
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (51 bp):
AAAATTTATTTTAAAATATATTTTAAAAATATAAAAAAATTAAAAAATAAA
Found at i:51294917 original size:26 final size:26
Alignment explanation
Indices: 51294886--51294942 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
51294876 ACTTCTAAAG
51294886 AAAACCCAAGAGAGAATTCTTGGAGA
1 AAAACCCAAGAGAGAATTCTTGGAGA
51294912 AAAACCCAAGAGAGAATTCTTGGAGA
1 AAAACCCAAGAGAGAATTCTTGGAGA
51294938 AAAAC
1 AAAAC
51294943 TAAACAAGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.49, C:0.16, G:0.21, T:0.14
Consensus pattern (26 bp):
AAAACCCAAGAGAGAATTCTTGGAGA
Found at i:51294952 original size:27 final size:26
Alignment explanation
Indices: 51294886--51294958 Score: 92
Period size: 26 Copynumber: 2.8 Consensus size: 26
51294876 ACTTCTAAAG
* *
51294886 AAAACCCAAGAGAGAATTCTTGGAGA
1 AAAACCAAAAAGAGAATTCTTGGAGA
* *
51294912 AAAACCCAAGAGAGAATTCTTGGAGA
1 AAAACCAAAAAGAGAATTCTTGGAGA
*
51294938 AAAACTAAACAAGAGAATTCT
1 AAAACCAAA-AAGAGAATTCT
51294959 GCACTTAAAC
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
26 33 0.77
27 10 0.23
ACGTcount: A:0.49, C:0.15, G:0.19, T:0.16
Consensus pattern (26 bp):
AAAACCAAAAAGAGAATTCTTGGAGA
Found at i:51294967 original size:95 final size:93
Alignment explanation
Indices: 51294756--51294931 Score: 300
Period size: 95 Copynumber: 1.9 Consensus size: 93
51294746 AAGATGGCTC
51294756 CCACAATCAAAAGATTGTTAAAACAACTTCTAAAGAAAACCCAAGAGAGAATTCTTGGAGAAAAA
1 CCACAATCAAAAGATTGTTAAAACAACTTCTAAAGAAAACCCAAGAGAGAATTCTTGGAGAAAAA
*
51294821 CTAAACACGAGAATTCTGCACTTAAACAAA
66 CCAAACACGAGAATTCTGCA--TAAACAAA
51294851 CCACAATCAAAAGATTGTTAAAACAACTTCTAAAGAAAACCCAAGAGAGAATTCTTGGAGAAAAA
1 CCACAATCAAAAGATTGTTAAAACAACTTCTAAAGAAAACCCAAGAGAGAATTCTTGGAGAAAAA
* *
51294916 CCCAAGA-GAGAATTCT
66 CCAAACACGAGAATTCT
51294932 TGGAGAAAAA
Statistics
Matches: 78, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
94 9 0.12
95 69 0.88
ACGTcount: A:0.49, C:0.19, G:0.14, T:0.19
Consensus pattern (93 bp):
CCACAATCAAAAGATTGTTAAAACAACTTCTAAAGAAAACCCAAGAGAGAATTCTTGGAGAAAAA
CCAAACACGAGAATTCTGCATAAACAAA
Found at i:51299076 original size:13 final size:14
Alignment explanation
Indices: 51299052--51299081 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
51299042 TAAAGTTAAT
51299052 AATAATAATAAAAA
1 AATAATAATAAAAA
51299066 AATAA-AATAAAAA
1 AATAATAATAAAAA
51299079 AAT
1 AAT
51299082 TAAACTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (14 bp):
AATAATAATAAAAA
Found at i:51299858 original size:25 final size:25
Alignment explanation
Indices: 51299810--51299858 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
51299800 CATAACTGAA
* * *
51299810 ATGAAATGGATTGATTTTGTATATT
1 ATGAAATAGATTGATTATGAATATT
*
51299835 ATGAAATATATTGATTATGAATAT
1 ATGAAATAGATTGATTATGAATAT
51299859 ATGTGTATTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (25 bp):
ATGAAATAGATTGATTATGAATATT
Found at i:51305782 original size:19 final size:17
Alignment explanation
Indices: 51305758--51305795 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 17
51305748 TTTAATTATT
51305758 TTATTAATATTATTTGATA
1 TTATTAATATT-TTTG-TA
51305777 TTATTAATATTTTTGTA
1 TTATTAATATTTTTGTA
51305794 TT
1 TT
51305796 GTGAAGTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.21
18 4 0.21
19 11 0.58
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (17 bp):
TTATTAATATTTTTGTA
Found at i:51306234 original size:15 final size:16
Alignment explanation
Indices: 51306214--51306248 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
51306204 AATTCACAAT
51306214 TAAATTTT-TATCATA
1 TAAATTTTATATCATA
*
51306229 TAAATTTTATATCTTA
1 TAAATTTTATATCATA
51306245 TAAA
1 TAAA
51306249 AATATTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (16 bp):
TAAATTTTATATCATA
Found at i:51306704 original size:19 final size:19
Alignment explanation
Indices: 51306680--51306717 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
51306670 TTTTTAAAAT
51306680 AATTAAG-TTTACTTTTTAA
1 AATTAAGATTTA-TTTTTAA
51306699 AATTAAGATTTATTTTTAA
1 AATTAAGATTTATTTTTAA
51306718 TTTAATGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (19 bp):
AATTAAGATTTATTTTTAA
Found at i:51307151 original size:15 final size:16
Alignment explanation
Indices: 51307133--51307163 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
51307123 TTAAAAAAGC
51307133 TTCA-TGAATAAAAAA
1 TTCATTGAATAAAAAA
51307148 TTCATTGAATAAAAAA
1 TTCATTGAATAAAAAA
51307164 ATATATCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.29
Consensus pattern (16 bp):
TTCATTGAATAAAAAA
Found at i:51309703 original size:6 final size:6
Alignment explanation
Indices: 51309692--51309724 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
51309682 ATTCTAGACC
51309692 TTCCTA TTCCTA TTCCTA TTCCTA TTCCTA TTC
1 TTCCTA TTCCTA TTCCTA TTCCTA TTCCTA TTC
51309725 TTCATCATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.15, C:0.33, G:0.00, T:0.52
Consensus pattern (6 bp):
TTCCTA
Found at i:51310060 original size:5 final size:5
Alignment explanation
Indices: 51310050--51310096 Score: 51
Period size: 5 Copynumber: 9.2 Consensus size: 5
51310040 TGAAGTTTTC
* *
51310050 TCGAA TCGAA TCGAG T-GAGA TGGAA TTCGAA TCGAA TCGAA TCGAA T
1 TCGAA TCGAA TCGAA TCGA-A TCGAA -TCGAA TCGAA TCGAA TCGAA T
51310097 ATATTTGTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
4 2 0.06
5 28 0.78
6 6 0.17
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.23
Consensus pattern (5 bp):
TCGAA
Found at i:51310780 original size:31 final size:30
Alignment explanation
Indices: 51310745--51310804 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
51310735 GGAGGTGGGA
*
51310745 TGGGAAGAGAATAAAAGTTTTAGGGGAAAAG
1 TGGG-AGAGAATAAAAATTTTAGGGGAAAAG
* * *
51310776 TGGGAGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAGAGAATAAAAATTTTAGGGGAAAA
51310805 TAAAAGGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (30 bp):
TGGGAGAGAATAAAAATTTTAGGGGAAAAG
Found at i:51313817 original size:62 final size:62
Alignment explanation
Indices: 51313749--51313890 Score: 182
Period size: 62 Copynumber: 2.3 Consensus size: 62
51313739 AATCGCAAAA
*
51313749 AGTAAGTCACATGGCCTAGACACACAC-T-CGTGTCTCTGGCCCGTGAGGT-TTCTAATAGCAAC
1 AGTAAGTCACACGGCCTAGACA-A-ACGTCCGTGTCTCTGGCCCGTGAGGTCTTC-AATAGCAAC
* * * *
51313811 AGTAAGTCACACGACCTGGACAAACGTCCGTGTGTCTGGCCCGTGTGGTCTTCAATAGCAAC
1 AGTAAGTCACACGGCCTAGACAAACGTCCGTGTCTCTGGCCCGTGAGGTCTTCAATAGCAAC
*
51313873 AGTGAGTCACACGGCCTA
1 AGTAAGTCACACGGCCTA
51313891 CCATATGACC
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
60 2 0.03
61 2 0.03
62 62 0.90
63 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (62 bp):
AGTAAGTCACACGGCCTAGACAAACGTCCGTGTCTCTGGCCCGTGAGGTCTTCAATAGCAAC
Found at i:51314906 original size:24 final size:24
Alignment explanation
Indices: 51314832--51314906 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 24
51314822 GATAGATGCA
* *
51314832 AACCCTATATGTTTTATACATGT-
1 AACCTTATATGTTTTATATATGTC
* *
51314855 AAACTCTATAAGTTTTA-ATATG-C
1 AACCT-TATATGTTTTATATATGTC
*
51314878 GAACCTTATATGTATTATATATGTC
1 -AACCTTATATGTTTTATATATGTC
51314903 AACC
1 AACC
51314907 CCCATGTTAT
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
23 16 0.40
24 23 0.57
25 1 0.03
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.40
Consensus pattern (24 bp):
AACCTTATATGTTTTATATATGTC
Found at i:51314935 original size:34 final size:34
Alignment explanation
Indices: 51314896--51314963 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
51314886 TATGTATTAT
51314896 ATATGTCAACCCCCATGTTATATACTATGACATA
1 ATATGTCAACCCCCATGTTATATACTATGACATA
* *
51314930 ATATGTGAACCCCCATGTTATATAGTATGACATA
1 ATATGTCAACCCCCATGTTATATACTATGACATA
51314964 GTGAACTGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (34 bp):
ATATGTCAACCCCCATGTTATATACTATGACATA
Found at i:51315008 original size:27 final size:27
Alignment explanation
Indices: 51314978--51315044 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
51314968 ACTGTTAGTA
51314978 CATGTATGCGAACAC-CCATGCGAACCC
1 CATGTATGCGAACACTCCATGCGAA-CC
51315005 CATGTATGCGAACACTCCATGCGAACC
1 CATGTATGCGAACACTCCATGCGAACC
*
51315032 TATGTATGCGAAC
1 CATGTATGCGAAC
51315045 CCCCTTTGTA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 29 0.76
28 9 0.24
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.19
Consensus pattern (27 bp):
CATGTATGCGAACACTCCATGCGAACC
Found at i:51315181 original size:15 final size:15
Alignment explanation
Indices: 51315104--51315181 Score: 66
Period size: 15 Copynumber: 4.9 Consensus size: 15
51315094 CGATTCAATA
*
51315104 TGCGAACACCATATATG
1 TGCGAAC-CC-TACATG
* *
51315121 TGCGAACCTTGCATG
1 TGCGAACCCTACATG
* **
51315136 TGCAAACCCTGTATG
1 TGCGAACCCTACATG
51315151 TGCGAACCTTCTACATG
1 TGCGAACC--CTACATG
51315168 TGCGAACCCTACAT
1 TGCGAACCCTACAT
51315182 ATGAACCTGT
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
15 29 0.58
16 1 0.02
17 20 0.40
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (15 bp):
TGCGAACCCTACATG
Found at i:51315512 original size:28 final size:28
Alignment explanation
Indices: 51315480--51315535 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
51315470 GGAGGACGGA
51315480 GGAGTTCTGTAGGAGAAAGTGGTAAATT
1 GGAGTTCTGTAGGAGAAAGTGGTAAATT
51315508 GGAGTTCTGTAGGAGAAAGTGGTAAATT
1 GGAGTTCTGTAGGAGAAAGTGGTAAATT
51315536 AAGTCCACGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.04, G:0.36, T:0.29
Consensus pattern (28 bp):
GGAGTTCTGTAGGAGAAAGTGGTAAATT
Found at i:51316453 original size:5 final size:5
Alignment explanation
Indices: 51316443--51316468 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
51316433 TGAGCATTCG
51316443 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
51316469 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:51317261 original size:30 final size:31
Alignment explanation
Indices: 51317222--51317281 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
51317212 GGAGGTGGGA
*
51317222 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
* *
51317253 TGGG-AGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAA
51317282 TAAAAAGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
Found at i:51317508 original size:9 final size:9
Alignment explanation
Indices: 51317494--51317548 Score: 83
Period size: 9 Copynumber: 6.1 Consensus size: 9
51317484 TATAGTTTGA
51317494 TATTCGAAT
1 TATTCGAAT
51317503 TATTCGAAT
1 TATTCGAAT
* *
51317512 TATTTGAGT
1 TATTCGAAT
51317521 TATTCGAAT
1 TATTCGAAT
*
51317530 TATTCGAGT
1 TATTCGAAT
51317539 TATTCGAAT
1 TATTCGAAT
51317548 T
1 T
51317549 CGAAAACTCA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 40 1.00
ACGTcount: A:0.29, C:0.09, G:0.15, T:0.47
Consensus pattern (9 bp):
TATTCGAAT
Found at i:51317523 original size:18 final size:18
Alignment explanation
Indices: 51317494--51317548 Score: 92
Period size: 18 Copynumber: 3.1 Consensus size: 18
51317484 TATAGTTTGA
*
51317494 TATTCGAATTATTCGAAT
1 TATTCGAGTTATTCGAAT
*
51317512 TATTTGAGTTATTCGAAT
1 TATTCGAGTTATTCGAAT
51317530 TATTCGAGTTATTCGAAT
1 TATTCGAGTTATTCGAAT
51317548 T
1 T
51317549 CGAAAACTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.29, C:0.09, G:0.15, T:0.47
Consensus pattern (18 bp):
TATTCGAGTTATTCGAAT
Found at i:51317619 original size:9 final size:9
Alignment explanation
Indices: 51317602--51317632 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
51317592 TCGAGTTGAT
51317602 TCGAATAAC
1 TCGAATAAC
*
51317611 TCGATTAAC
1 TCGAATAAC
51317620 TCGAATAAC
1 TCGAATAAC
51317629 TCGA
1 TCGA
51317633 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:51320439 original size:18 final size:18
Alignment explanation
Indices: 51320406--51320441 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
51320396 TGCTTATTCT
*
51320406 CTCTTTTTTTCGGTTTTA
1 CTCTTTTTTTCAGTTTTA
*
51320424 CTCTTTTTTTTAGTTTTA
1 CTCTTTTTTTCAGTTTTA
51320442 ATTTTTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.08, C:0.14, G:0.08, T:0.69
Consensus pattern (18 bp):
CTCTTTTTTTCAGTTTTA
Found at i:51321873 original size:36 final size:37
Alignment explanation
Indices: 51321826--51321895 Score: 106
Period size: 36 Copynumber: 1.9 Consensus size: 37
51321816 ATTGCTTTTA
* *
51321826 TTTTCTGCCGATTTGGT-CCCAGTTTATTTTCTTGCC
1 TTTTCTGCCGATTTGCTCCCCAGATTATTTTCTTGCC
*
51321862 TTTTCTGCCGATTTGCTCCCCCGATTATTTTCTT
1 TTTTCTGCCGATTTGCTCCCCAGATTATTTTCTT
51321896 TTCTATTTCG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
36 16 0.53
37 14 0.47
ACGTcount: A:0.09, C:0.27, G:0.14, T:0.50
Consensus pattern (37 bp):
TTTTCTGCCGATTTGCTCCCCAGATTATTTTCTTGCC
Found at i:51324657 original size:51 final size:51
Alignment explanation
Indices: 51324596--51324698 Score: 181
Period size: 51 Copynumber: 2.0 Consensus size: 51
51324586 AAATTAAAAG
*
51324596 ATTATACATACACCAACAATGTT-TTTTAGGGTAAATAACATTAAACCAACA
1 ATTATACATACACCAACAATGTTATTCT-GGGTAAATAACATTAAACCAACA
51324647 ATTATACATACACCAACAATGTTATTCTGGGTAAATAACATTAAACCAACA
1 ATTATACATACACCAACAATGTTATTCTGGGTAAATAACATTAAACCAACA
51324698 A
1 A
51324699 GTAATTTTAG
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
51 47 0.94
52 3 0.06
ACGTcount: A:0.46, C:0.18, G:0.08, T:0.28
Consensus pattern (51 bp):
ATTATACATACACCAACAATGTTATTCTGGGTAAATAACATTAAACCAACA
Found at i:51324728 original size:33 final size:33
Alignment explanation
Indices: 51324645--51324754 Score: 125
Period size: 33 Copynumber: 3.3 Consensus size: 33
51324635 ATTAAACCAA
* * *
51324645 CAATTATACATACACCAACAATGTTATTCTGGGT
1 CAATTATACATACACCAACAA-GTAATTTTAGGT
* *
51324679 -AAATA-ACATTAAACCAACAAGTAATTTTAGGT
1 CAATTATACA-TACACCAACAAGTAATTTTAGGT
* *
51324711 CAATTATACATACACCAACAATTAATTTTACGT
1 CAATTATACATACACCAACAAGTAATTTTAGGT
51324744 CAATTATACAT
1 CAATTATACAT
51324755 GCTTTATAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
32 12 0.19
33 49 0.77
34 3 0.05
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.32
Consensus pattern (33 bp):
CAATTATACATACACCAACAAGTAATTTTAGGT
Found at i:51327775 original size:18 final size:18
Alignment explanation
Indices: 51327717--51327783 Score: 55
Period size: 18 Copynumber: 3.6 Consensus size: 18
51327707 ATGATTTGAG
51327717 TAAATTAATATA-TTTAAT
1 TAAATT-ATATAGTTTAAT
* * *
51327735 AATAATTATTAAGAGTTTTAT
1 TA-AATTA-T-ATAGTTTAAT
51327756 TAAATTATATAGTTTAAT
1 TAAATTATATAGTTTAAT
*
51327774 TAAAATATAT
1 TAAATTATAT
51327784 TTAATAATAA
Statistics
Matches: 38, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
18 19 0.50
19 6 0.16
20 7 0.18
21 6 0.16
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (18 bp):
TAAATTATATAGTTTAAT
Found at i:51327939 original size:120 final size:120
Alignment explanation
Indices: 51327657--51328229 Score: 1038
Period size: 120 Copynumber: 4.8 Consensus size: 120
51327647 TTTTCAAGTT
51327657 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
** * * * *
51327722 TAATATATTTAATAATAATTATTAAGAGTTTTATTAAATTATATAGTTTAATTAAA
66 TAATATA-AGAATATTAATTATTAAGAATTTTATTAAATCAAATAGTTTAATTAAA
*
51327778 ATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
51327843 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATCAAATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATCAAATAGTTTAATTAAA
51327898 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
51327963 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATCAAATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATCAAATAGTTTAATTAAA
51328018 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
51328083 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATCAAATAGTTTAATTAAA
51328138 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
51328203 TAATATAAGAATATTAATTATTAAGAA
66 TAATATAAGAATATTAATTATTAAGAA
51328230 CATATGGATT
Statistics
Matches: 440, Mismatches: 12, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
120 369 0.84
121 71 0.16
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.47
Consensus pattern (120 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTATTAAATCAAATAGTTTAATTAAA
Found at i:51328442 original size:181 final size:181
Alignment explanation
Indices: 51328138--51328773 Score: 1227
Period size: 181 Copynumber: 3.5 Consensus size: 181
51328128 TTTAATTAAA
51328138 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
51328203 TAATATAAGAATATTAATTATTAAGAACATATGGATTATGATGTACAATTTCATTTTCATCTAAC
66 TAATATAAGAATATTAATTATTAAGAACATATGGATTATGATGTACAATTTCATTTTCATCTAAC
*
51328268 TTTTTGTTAGTATAAATTAATTATGTTTATGCAGAATATAATTTTCAAGTT
131 TTTTTGTTAGTATAAATTAATTATGTTTATGCAGAATATAATTTTTAAGTT
51328319 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
51328384 TAATATAAGAATATTAATTATTAAGAACATATGGATTATGATGTACAATTTCATTTTCATCTAAC
66 TAATATAAGAATATTAATTATTAAGAACATATGGATTATGATGTACAATTTCATTTTCATCTAAC
51328449 TTTTTGTTAGTATAAATTAATTATGTTTATGCAGAATATAATTTTTAAGTT
131 TTTTTGTTAGTATAAATTAATTATGTTTATGCAGAATATAATTTTTAAGTT
51328500 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
51328565 TAATATAAGAATATTAATTATTAAGAACATATGGATTATGATGTACAATTTCATTTTCATCTAAC
66 TAATATAAGAATATTAATTATTAAGAACATATGGATTATGATGTACAATTTCATTTTCATCTAAC
51328630 TTTTTGTTAGTATAAATTAATTATGTTTATGCAGAATATAATTTTTAAGTT
131 TTTTTGTTAGTATAAATTAATTATGTTTATGCAGAATATAATTTTTAAGTT
51328681 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
** *
51328746 TAATATATTTAATAATAATTATTAAGAA
66 TAATATA-AGAATATTAATTATTAAGAA
51328774 TTTTATTAAA
Statistics
Matches: 450, Mismatches: 4, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
181 433 0.96
182 17 0.04
ACGTcount: A:0.39, C:0.05, G:0.09, T:0.47
Consensus pattern (181 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
TAATATAAGAATATTAATTATTAAGAACATATGGATTATGATGTACAATTTCATTTTCATCTAAC
TTTTTGTTAGTATAAATTAATTATGTTTATGCAGAATATAATTTTTAAGTT
Found at i:51328806 original size:121 final size:120
Alignment explanation
Indices: 51328681--51328944 Score: 438
Period size: 121 Copynumber: 2.2 Consensus size: 120
51328671 TTTTTAAGTT
*
51328681 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAATATCATATATTATGATTTGAGTAAAT
** * *
51328746 TAATATATTTAATAATAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATA-AGAATAATAATTATTAAGAATTTTATTAAATCAAATAGTTTAATTAAA
51328802 ATATATTTAATAATAATTATGTTAATTTATATTTTACAATATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAATATCATATATTATGATTTGAGTAAAT
* * *
51328867 TAATATAAGAATATTAATTATTAATAATTTTATTAAATCAAATATTTTAATTAAA
66 TAATATAAGAATAATAATTATTAAGAATTTTATTAAATCAAATAGTTTAATTAAA
*
51328922 ATATATTTAATAAAAATTATGTT
1 ATATATTTAATAATAATTATGTT
51328945 TAAATATGAT
Statistics
Matches: 134, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
120 63 0.47
121 71 0.53
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (120 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAATATCATATATTATGATTTGAGTAAAT
TAATATAAGAATAATAATTATTAAGAATTTTATTAAATCAAATAGTTTAATTAAA
Found at i:51328923 original size:14 final size:15
Alignment explanation
Indices: 51328906--51328938 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
51328896 TTATTAAATC
*
51328906 AAATAT-TTTAATTA
1 AAATATATTTAATAA
51328920 AAATATATTTAATAA
1 AAATATATTTAATAA
51328935 AAAT
1 AAAT
51328939 TATGTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
AAATATATTTAATAA
Found at i:51329676 original size:11 final size:11
Alignment explanation
Indices: 51329660--51329740 Score: 54
Period size: 11 Copynumber: 7.4 Consensus size: 11
51329650 TCAAATAAGC
51329660 TATTTTGTTGT
1 TATTTTGTTGT
51329671 TATTTTGTTGT
1 TATTTTGTTGT
* **
51329682 TGTTTCATTGT
1 TATTTTGTTGT
* *
51329693 TGTTTTGTTAT
1 TATTTTGTTGT
* ** *
51329704 CATTTTACTAT
1 TATTTTGTTGT
* * *
51329715 TATATTGCTAT
1 TATTTTGTTGT
51329726 TATTTTGTTGT
1 TATTTTGTTGT
51329737 TATT
1 TATT
51329741 ATTTGAATAT
Statistics
Matches: 54, Mismatches: 16, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
11 54 1.00
ACGTcount: A:0.15, C:0.05, G:0.14, T:0.67
Consensus pattern (11 bp):
TATTTTGTTGT
Found at i:51329840 original size:25 final size:26
Alignment explanation
Indices: 51329812--51329863 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
51329802 TTTGTTAAGT
*
51329812 TATAATTA-TTTTAATAT-TATTTAAA
1 TATAAATATTTTTAATATAT-TTTAAA
51329837 TATAAATATTTTTAATATATTTTAAA
1 TATAAATATTTTTAATATATTTTAAA
51329863 T
1 T
51329864 TTGTTAGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 7 0.29
26 16 0.67
27 1 0.04
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (26 bp):
TATAAATATTTTTAATATATTTTAAA
Found at i:51329856 original size:17 final size:17
Alignment explanation
Indices: 51329824--51329855 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
51329814 TAATTATTTT
51329824 AATATTATTTAAATATA
1 AATATTATTTAAATATA
51329841 AATATT-TTT-AATATA
1 AATATTATTTAAATATA
51329856 TTTTAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 3 0.20
17 6 0.40
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AATATTATTTAAATATA
Found at i:51331957 original size:28 final size:28
Alignment explanation
Indices: 51331923--51331980 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
51331913 ATTATTTTCC
51331923 TATTTAAGAGTTGGAGAAAAGCTTTCAA
1 TATTTAAGAGTTGGAGAAAAGCTTTCAA
* *
51331951 TATTTAAGAGTTTGAGAAAAGCTTTTAA
1 TATTTAAGAGTTGGAGAAAAGCTTTCAA
51331979 TA
1 TA
51331981 GTTCTAAGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.40, C:0.05, G:0.19, T:0.36
Consensus pattern (28 bp):
TATTTAAGAGTTGGAGAAAAGCTTTCAA
Found at i:51335414 original size:151 final size:150
Alignment explanation
Indices: 51335142--51335597 Score: 761
Period size: 151 Copynumber: 3.0 Consensus size: 150
51335132 TATGCCCAAC
51335142 GGTAAATCTCGTAAAGGTCTTTTTGTCTGCCATGAAGAGGGGG-AAAGGATATATATCAAAAAGA
1 GGTAAATCTCGTAAAGGTCTTTTTGTCTGCCATGAAGAGGGGGAAAAGGATATATATCAAAAAGA
* * ** *
51335206 GATCACAATAAGGTGGCTTGCCAGTCATGCGAATCGACTCAACATAAAAGGACATATTAGTACTT
66 GATCATAATAAGGTGGCTTGTCAGTCATGCGAATCGACTCAATGTAAAAGGACATATTAGTATTT
*
51335271 AGGGTGCTCATTTTATCTAT
131 AGGGTGCTTATTTTATCTAT
* *
51335291 GGTAAATCTCGTAAAGGTCTTTTTGTCTTCCATGATGAGGGGGGAAAAGGATATATATCAAAAAG
1 GGTAAATCTCGTAAAGGTCTTTTTGTCTGCCATGAAGA-GGGGGAAAAGGATATATATCAAAAAG
*
51335356 AGATCATAATAAGGTGGCTTGTCAGTCATGCGAATCAACTCAATGTAAAAGGACATATTAGTATT
65 AGATCATAATAAGGTGGCTTGTCAGTCATGCGAATCGACTCAATGTAAAAGGACATATTAGTATT
51335421 TAGGGTGCTTATTTTATCTAT
130 TAGGGTGCTTATTTTATCTAT
* *
51335442 GGTAAATCTCGTAAAGGTCTTTTTGTCTGCCATGAAGAGGGGAAAAAGGATATATATCAAAAATA
1 GGTAAATCTCGTAAAGGTCTTTTTGTCTGCCATGAAGAGGGGGAAAAGGATATATATCAAAAAGA
* *
51335507 GATCATAATAAGGTGCCTTGTCAGTCATGCGAATCGGCTCAATGTAAAAGGACATATTAGTATTT
66 GATCATAATAAGGTGGCTTGTCAGTCATGCGAATCGACTCAATGTAAAAGGACATATTAGTATTT
**
51335572 AGCATGCTTATTTTATCTAT
131 AGGGTGCTTATTTTATCTAT
51335592 GGTAAA
1 GGTAAA
51335598 GATAGATAAT
Statistics
Matches: 287, Mismatches: 18, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
149 36 0.13
150 116 0.40
151 135 0.47
ACGTcount: A:0.34, C:0.13, G:0.22, T:0.31
Consensus pattern (150 bp):
GGTAAATCTCGTAAAGGTCTTTTTGTCTGCCATGAAGAGGGGGAAAAGGATATATATCAAAAAGA
GATCATAATAAGGTGGCTTGTCAGTCATGCGAATCGACTCAATGTAAAAGGACATATTAGTATTT
AGGGTGCTTATTTTATCTAT
Found at i:51337926 original size:15 final size:14
Alignment explanation
Indices: 51337906--51337943 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
51337896 ATTATGTAAT
*
51337906 ACATATATTTATAAA
1 ACATATATATA-AAA
51337921 ACATATATATAAAA
1 ACATATATATAAAA
51337935 ACA-ATATAT
1 ACATATATAT
51337944 CAAACTTGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 6 0.27
14 6 0.27
15 10 0.45
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.34
Consensus pattern (14 bp):
ACATATATATAAAA
Found at i:51369928 original size:12 final size:11
Alignment explanation
Indices: 51369904--51369951 Score: 51
Period size: 11 Copynumber: 4.0 Consensus size: 11
51369894 ATTATAAATC
51369904 ATTTTATTTAT
1 ATTTTATTTAT
51369915 ATTTTATTTCAT
1 ATTTTATTT-AT
51369927 ATGTGTTTATTTAT
1 A--T-TTTATTTAT
*
51369941 ATTTAATTTAT
1 ATTTTATTTAT
51369952 TTTGTTCGCT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
11 17 0.53
12 4 0.12
14 4 0.12
15 7 0.22
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (11 bp):
ATTTTATTTAT
Found at i:51370358 original size:88 final size:82
Alignment explanation
Indices: 51370239--51370630 Score: 352
Period size: 79 Copynumber: 4.7 Consensus size: 82
51370229 CCAAAATTAA
* * * *
51370239 AAGTAAATAAAATCTATTTTGGGATTCATTCCCGCTGTTCAACGGATTTTATTCCATTATTTTAT
1 AAGTAAATAAAATCTGTTTTGGGATTGATTCCCGCCGTTCAACGGATTTTATTCCATTATTTTGT
51370304 TTTATTTCCAAACGAAAATTTG
66 TTTATTTCC-AA--AAAA--TG
* * *
51370326 AAGGTAAATAAAATCTGTTTTGGGATTTATTCCCGCCGTTCAACGGATTGTATTCTATTATTTTG
1 AA-GTAAATAAAATCTGTTTTGGGATTGATTCCCGCCGTTCAACGGATTTTATTCCATTATTTTG
*
51370391 TTTCTATTTCCAAACGGGAAATTA
65 TTT-TATTTCCAAA----AAA-TG
* ** * * * *
51370415 AAGGTAAATAAAAACCATTTTGGGATTGATTCCCGCCGTTTAAC-AATTTTGTTCCA-AATTTTG
1 AA-GTAAATAAAATCTGTTTTGGGATTGATTCCCGCCGTTCAACGGATTTTATTCCATTATTTTG
*
51370478 TTTTATTT-CAAAAAACG
65 TTTTATTTCCAAAAAATG
* * * * *
51370495 -AGTAAAATAGAATCTGTTTCGAGATTGATTCCCGCCGTTCAAC-AATTTTATTCCA-AATTTTG
1 AAGT-AAATAAAATCTGTTTTGGGATTGATTCCCGCCGTTCAACGGATTTTATTCCATTATTTTG
*
51370557 TTTTATTTCC-AAAAA-C
65 TTTTATTTCCAAAAAATG
* * * *
51370573 AAGTAAAATAAAATCTGTTTCGGGATTGATTCTCGCTGTTCAACGGA-TTTATTACATT
1 AAGT-AAATAAAATCTGTTTTGGGATTGATTCCCGCCGTTCAACGGATTTTATTCCATT
51370631 TTGATTTTTT
Statistics
Matches: 259, Mismatches: 35, Indels: 29
0.80 0.11 0.09
Matches are distributed among these distances:
78 2 0.01
79 111 0.43
80 2 0.01
81 3 0.01
85 4 0.02
86 6 0.02
87 11 0.04
88 69 0.27
89 48 0.19
90 3 0.01
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (82 bp):
AAGTAAATAAAATCTGTTTTGGGATTGATTCCCGCCGTTCAACGGATTTTATTCCATTATTTTGT
TTTATTTCCAAAAAATG
Found at i:51370440 original size:89 final size:87
Alignment explanation
Indices: 51370231--51370454 Score: 313
Period size: 88 Copynumber: 2.5 Consensus size: 87
51370221 TTTTGTTTCC
* * *
51370231 AAAATTAAAAGTAAATAAAATCTATTTTGGGATTCATTCCCGCTGTTCAACGGATTTTATTCCAT
1 AAAATTAAAGGTAAATAAAATCTATTTTGGGATTCATTCCCGCCGTTCAACGGATTGTATTCCAT
51370296 TATTTTATTTTATTTCCAAACG
66 TATTTTATTTTATTTCCAAACG
* * * *
51370318 AAAATTTGAAGGTAAATAAAATCTGTTTTGGGATTTATTCCCGCCGTTCAACGGATTGTATTCTA
1 AAAA-TTAAAGGTAAATAAAATCTATTTTGGGATTCATTCCCGCCGTTCAACGGATTGTATTCCA
*
51370383 TTATTTTGTTTCTATTTCCAAACGG
65 TTATTTTATTT-TATTTCCAAAC-G
* * * *
51370408 GAAATTAAAGGTAAATAAAAACCATTTTGGGATTGATTCCCGCCGTT
1 AAAATTAAAGGTAAATAAAATCTATTTTGGGATTCATTCCCGCCGTT
51370455 TAACAATTTT
Statistics
Matches: 120, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
87 4 0.03
88 63 0.52
89 49 0.41
90 4 0.03
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.39
Consensus pattern (87 bp):
AAAATTAAAGGTAAATAAAATCTATTTTGGGATTCATTCCCGCCGTTCAACGGATTGTATTCCAT
TATTTTATTTTATTTCCAAACG
Found at i:51370758 original size:84 final size:83
Alignment explanation
Indices: 51370660--51371066 Score: 431
Period size: 84 Copynumber: 4.9 Consensus size: 83
51370650 CGAGAAATTA
* * *
51370660 AATTAAATAAAATTTGTTTC-AGGATTTATTCTCGTCGTTTAATAAGATTTTATTTGGTTTGATT
1 AATTAAATAAAATTTGTTTCGA-GATTTATTCTCGCCGTTTAACAAGATTTTATTTGATTTG-TT
51370724 TTGTTTCCAAATTAGAATAT
64 TTGTTTCCAAATTAGAATAT
* * *
51370744 AATTAAATAAAATTTGTTTCGAGATTTATTCTCGCCATTTAACAAGATTTTACTTGAGTTGATTT
1 AATTAAATAAAATTTGTTTCGAGATTTATTCTCGCCGTTTAACAAGATTTTATTTGATTTG-TTT
*
51370809 TGTTTCCAAATCAGAATAT
65 TGTTTCCAAATTAGAATAT
* * * *
51370828 AATTAAGTAAAATCTGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTT-TTTT
1 AATTAAATAAAATTTGTTTCGAGATTTATTCTCGCCGTTTAACAAGATTTTATTTGATTTGTTTT
51370892 -TTTCCAAATTCA-AAT-T
66 GTTTCCAAATT-AGAATAT
* * *
51370908 GAATTAAATAAAATTTGTTTCGAGATTTATT-TCCGCAGTTTAACAAGAATTTATTCGATATTGT
1 -AATTAAATAAAATTTGTTTCGAGATTTATTCT-CGCCGTTTAACAAGATTTTATTTGAT-TTGT
* * *
51370972 TTTGTTTCCAAA-GA-AAGACGC
63 TTTGTTTCCAAATTAGAATA--T
* * * * *
51370993 AATCAAAT--AATTCTGTTTCGGGATTTATTC-CTGCCATTTAACAAGATTTTATTCGATATTAT
1 AATTAAATAAAATT-TGTTTCGAGATTTATTCTC-GCCGTTTAACAAGATTTTATTTGAT-TTGT
51371055 TTTGTTTCCAAA
63 TTTGTTTCCAAA
51371067 CAAATATGTA
Statistics
Matches: 279, Mismatches: 31, Indels: 27
0.83 0.09 0.08
Matches are distributed among these distances:
80 1 0.00
81 62 0.22
82 15 0.05
83 57 0.20
84 143 0.51
85 1 0.00
ACGTcount: A:0.31, C:0.12, G:0.13, T:0.44
Consensus pattern (83 bp):
AATTAAATAAAATTTGTTTCGAGATTTATTCTCGCCGTTTAACAAGATTTTATTTGATTTGTTTT
GTTTCCAAATTAGAATAT
Found at i:51370817 original size:249 final size:246
Alignment explanation
Indices: 51370557--51371066 Score: 519
Period size: 249 Copynumber: 2.1 Consensus size: 246
51370547 CCAAATTTTG
* * * *
51370557 TTTTATTTCCAAA-AACAA-GTAA-AA-TAAAATCTGTTTCGGGATTGATTCTCGCTGTTCAAC-
1 TTTTGTTTCCAAATAACAATATAATAAGTAAAATCTGTTTCGGGATTGATTCCCGCCGTTCAACA
*
51370617 GGA-TTTATTACATTTTGATTTTTTTGCCAAAAACGAGAAATTAAATTAAATAAAATTTGTTTC-
66 AGATTTTATTACA-TTT--TTTTTTT-CCAAAAAC---AAATTAAATTAAATAAAATTTGTTTCG
* * * * * *
51370680 AGGATTTA-TTCTCGTC-GTTTAATAAGATTTTATTTGGT-TTGATTTTGTTTCCAAATTAGAAT
124 A-GATTTATTTC-CG-CAGTTTAACAAGAATTTATTCGATATTG-TTTTGTTTCCAAA-GA-AAG
* *
51370742 A-TAATTAAATAAAATT-TGTTTCGAGATTTATT-CTCGCCATTTAACAAGATTTTACTT-GAGT
183 ACCAATCAAAT--AATTCTGTTTCGAGATTTATTCCT-GCCATTTAACAAGATTTTA-TTCGA-T
51370803 -TGA
243 ATGA
* * * *
51370806 TTTTGTTTCCAAATCAGAATATAATTAAGTAAAATCTGTTTCGGGATTTATTCCCGCCGTTTAAC
1 TTTTGTTTCCAAATAACAATATAA-TAAGTAAAATCTGTTTCGGGATTGATTCCCGCCGTTCAAC
** ** *
51370871 AAGATTTTATTTGATTTTTTTTTTCCAAATTCAAATTGAATTAAATAAAATTTGTTTCGAGATTT
65 AAGATTTTATTACATTTTTTTTTTCCAAAAACAAATTAAATTAAATAAAATTTGTTTCGAGATTT
51370936 ATTTCCGCAGTTTAACAAGAATTTATTCGATATTGTTTTGTTTCCAAAGAAAGACGCAATCAAAT
130 ATTTCCGCAGTTTAACAAGAATTTATTCGATATTGTTTTGTTTCCAAAGAAAGAC-CAATCAAAT
* *
51371001 AATTCTGTTTCGGGATTTATTCCTGCCATTTAACAAGATTTTATTCGATATTA
194 AATTCTGTTTCGAGATTTATTCCTGCCATTTAACAAGATTTTATTCGATATGA
51371054 TTTTGTTTCCAAA
1 TTTTGTTTCCAAA
51371067 CAAATATGTA
Statistics
Matches: 220, Mismatches: 24, Indels: 35
0.79 0.09 0.13
Matches are distributed among these distances:
247 10 0.05
248 53 0.24
249 85 0.39
250 10 0.05
251 3 0.01
252 6 0.03
253 9 0.04
254 32 0.15
255 5 0.02
256 7 0.03
ACGTcount: A:0.32, C:0.12, G:0.13, T:0.43
Consensus pattern (246 bp):
TTTTGTTTCCAAATAACAATATAATAAGTAAAATCTGTTTCGGGATTGATTCCCGCCGTTCAACA
AGATTTTATTACATTTTTTTTTTCCAAAAACAAATTAAATTAAATAAAATTTGTTTCGAGATTTA
TTTCCGCAGTTTAACAAGAATTTATTCGATATTGTTTTGTTTCCAAAGAAAGACCAATCAAATAA
TTCTGTTTCGAGATTTATTCCTGCCATTTAACAAGATTTTATTCGATATGA
Found at i:51370928 original size:165 final size:166
Alignment explanation
Indices: 51370660--51371066 Score: 492
Period size: 165 Copynumber: 2.4 Consensus size: 166
51370650 CGAGAAATTA
* * * * * *
51370660 AATTAAATAAAATTTGTTTCAGGATTTATTCTCGTCGTTTAATAAGATTTTATTTGGTTTGATTT
1 AATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTT-ATTT
51370725 TGTTTCCAAATTAGAATATAATTAAATAAAATTTGTTTCGAGATTTA-TTCTCGCCA-TTTAACA
65 TGTTTCCAAATTAGAATATAATTAAATAAAATTTGTTTCGAGATTTATTTC-CG-CAGTTTAACA
* * * *
51370788 AGATTTTACTT-GA-GTTGATTTTGTTTCCAAATCAGAATA-T
128 AGAATTTA-TTCGATATTG-TTTTGTTTCCAAA-CA-AAGACC
*
51370828 AATTAAGTAAAATCTGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTT-TTTT
1 AATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTATTTT
51370892 -TTTCCAAATTCA-AAT-TGAATTAAATAAAATTTGTTTCGAGATTTATTTCCGCAGTTTAACAA
66 GTTTCCAAATT-AGAATAT-AATTAAATAAAATTTGTTTCGAGATTTATTTCCGCAGTTTAACAA
*
51370954 GAATTTATTCGATATTGTTTTGTTTCCAAAGAAAGACGC
129 GAATTTATTCGATATTGTTTTGTTTCCAAACAAAGAC-C
* * * * *
51370993 AATCAAAT-AATTCTGTTTCGGGATTTATTCCTGCCATTTAACAAGATTTTATTCGATATTATTT
1 AATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGAT-TTATTT
51371057 TGTTTCCAAA
65 TGTTTCCAAA
51371067 CAAATATGTA
Statistics
Matches: 210, Mismatches: 18, Indels: 23
0.84 0.07 0.09
Matches are distributed among these distances:
163 3 0.01
164 51 0.24
165 80 0.38
166 15 0.07
167 8 0.04
168 53 0.25
ACGTcount: A:0.31, C:0.12, G:0.13, T:0.44
Consensus pattern (166 bp):
AATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTATTTT
GTTTCCAAATTAGAATATAATTAAATAAAATTTGTTTCGAGATTTATTTCCGCAGTTTAACAAGA
ATTTATTCGATATTGTTTTGTTTCCAAACAAAGACC
Found at i:51371033 original size:83 final size:79
Alignment explanation
Indices: 51370670--51371127 Score: 319
Period size: 84 Copynumber: 5.6 Consensus size: 79
51370660 AATTAAATAA
* * * * * *
51370670 AATT-TGTTTCAGGATTTATTCTCGTCGTTTAATAAGATTTTATTTGGT-TTGATTTTGTTTCCA
1 AATTCTGTTTCGGGATTTATTC-CGCCATTTAACAAGATTTTATTCGATATT--TTTTGTTTCCA
* *
51370733 AATTAGAATAT-AATTAAAT
63 AA-CA-AA-ATGAATCAAAT
* *
51370752 AAAATT-TGTTTCGAGATTTATTCTCGCCATTTAACAAGATTTTACTT-GAGT-TGATTTTGTTT
1 --AATTCTGTTTCGGGATTTATTC-CGCCATTTAACAAGATTTTA-TTCGA-TAT-TTTTTGTTT
* *
51370814 CCAAATCAGAATAT-AATTAAGT
60 CCAAA-CA-AA-ATGAATCAAAT
* * *
51370836 AAAATCTGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGAT-TTTTTT-TTTCCAA
1 -AATTCTGTTTCGGGATTTATT-CCGCCATTTAACAAGATTTTATTCGATATTTTTTGTTTCCAA
* *
51370899 ATTCAAATTGAATTAAAT
64 A--CAAAATGAATCAAAT
* *
51370917 AAAATT-TGTTTCGAGATTTATTTCCG-CAGTTTAACAAGAATTTATTCGATATTGTTTTGTTTC
1 --AATTCTGTTTCGGGATTTA-TTCCGCCA-TTTAACAAGATTTTATTCGATATT-TTTTGTTTC
* *
51370980 CAAAGAAAGACGCAATCAAAT
61 CAAACAAA-ATG-AATCAAAT
51371001 AATTCTGTTTCGGGATTTATTCCTGCCATTTAACAAGATTTTATTCGATATTATTTTGTTTCCAA
1 AATTCTGTTTCGGGATTTATTCC-GCCATTTAACAAGATTTTATTCGATATT-TTTTGTTTCCAA
*
51371066 ACAAATATGTAACCAAAT
64 ACAAA-ATG-AATCAAAT
** **
51371084 AATTCTGTTTTTGGATTTATTCCCGCTGTTTAAC-AGATTTTATT
1 AATTCTGTTTCGGGATTTATT-CCGCCATTTAACAAGATTTTATT
51371128 TTGATTTAAT
Statistics
Matches: 318, Mismatches: 36, Indels: 42
0.80 0.09 0.11
Matches are distributed among these distances:
80 2 0.01
81 52 0.16
82 36 0.11
83 102 0.32
84 121 0.38
85 5 0.02
ACGTcount: A:0.30, C:0.12, G:0.13, T:0.45
Consensus pattern (79 bp):
AATTCTGTTTCGGGATTTATTCCGCCATTTAACAAGATTTTATTCGATATTTTTTGTTTCCAAAC
AAAATGAATCAAAT
Found at i:51371152 original size:59 final size:60
Alignment explanation
Indices: 51371082--51371194 Score: 147
Period size: 59 Copynumber: 1.9 Consensus size: 60
51371072 ATGTAACCAA
** * * *
51371082 ATAATTCTGTTTTTGGATTTATTCCCGCTGTTTAACAGATTT-TATTTTGATTTAATGAT
1 ATAATTCTGTTTCGGGATTTAATCCCGCTGTTTAAAAAATTTGTATTTTGATTTAATGAT
* * *
51371141 ATAATTTTGTTTCGGGATTTAATCCTGCTGTTTAAAAAATTTGTTTTTTGATTT
1 ATAATTCTGTTTCGGGATTTAATCCCGCTGTTTAAAAAATTTGTATTTTGATTT
51371195 CGTTTTAGAA
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
59 35 0.78
60 10 0.22
ACGTcount: A:0.24, C:0.09, G:0.14, T:0.53
Consensus pattern (60 bp):
ATAATTCTGTTTCGGGATTTAATCCCGCTGTTTAAAAAATTTGTATTTTGATTTAATGAT
Found at i:51371593 original size:16 final size:16
Alignment explanation
Indices: 51371568--51371638 Score: 71
Period size: 16 Copynumber: 4.7 Consensus size: 16
51371558 CCGAATATAA
*
51371568 TAAATATTTTTATTTT
1 TAAATATTTTTAATTT
*
51371584 TAAATTTTTTTAATTT
1 TAAATATTTTTAATTT
51371600 TAAA-A----TAATTT
1 TAAATATTTTTAATTT
*
51371611 TAAATTTTTTTAATTT
1 TAAATATTTTTAATTT
51371627 TAAAATATTTTT
1 T-AAATATTTTT
51371639 TTAAAATTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 11
0.73 0.08 0.18
Matches are distributed among these distances:
11 10 0.23
16 25 0.57
17 9 0.20
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TAAATATTTTTAATTT
Found at i:51371611 original size:27 final size:27
Alignment explanation
Indices: 51371581--51371638 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
51371571 ATATTTTTAT
51371581 TTTTAAATTTTTTTAATTTTAAAATAA
1 TTTTAAATTTTTTTAATTTTAAAATAA
*
51371608 TTTTAAATTTTTTTAATTTTAAAATAT
1 TTTTAAATTTTTTTAATTTTAAAATAA
51371635 TTTT
1 TTTT
51371639 TTAAAATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (27 bp):
TTTTAAATTTTTTTAATTTTAAAATAA
Found at i:51371642 original size:13 final size:14
Alignment explanation
Indices: 51371624--51371656 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
51371614 ATTTTTTTAA
51371624 TTTTAAAATATTT-
1 TTTTAAAATATTTG
*
51371637 TTTTAAAATTTTTG
1 TTTTAAAATATTTG
51371651 TTTTAA
1 TTTTAA
51371657 TTTTTAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (14 bp):
TTTTAAAATATTTG
Found at i:51380877 original size:2 final size:2
Alignment explanation
Indices: 51380870--51380899 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
51380860 CCTCTTCCAC
51380870 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
51380900 GTTTTCAAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:51384967 original size:26 final size:26
Alignment explanation
Indices: 51384931--51385170 Score: 257
Period size: 26 Copynumber: 9.2 Consensus size: 26
51384921 GTACATAGTA
* * * *
51384931 CCTGATAAATATACATCGGCTTAAGG
1 CCTGCTAAATAAACACCGGCTCAAGG
* **
51384957 CCTGTTAAATAAACACCAACTCAAGG
1 CCTGCTAAATAAACACCGGCTCAAGG
* *
51384983 CTTGCTAAATAAACATCGGCTCAAGG
1 CCTGCTAAATAAACACCGGCTCAAGG
* *
51385009 CCTACTAAATAACCACCGGCTCAAGG
1 CCTGCTAAATAAACACCGGCTCAAGG
* * *
51385035 CATGTTAAATAAACATCGGCTCAAGG
1 CCTGCTAAATAAACACCGGCTCAAGG
* * *
51385061 CCTGTTAAATAACCACCGGCTAAAGG
1 CCTGCTAAATAAACACCGGCTCAAGG
* * * *
51385087 CCTACTAAATAGACACTGGCTCAATG
1 CCTGCTAAATAAACACCGGCTCAAGG
*
51385113 CCTGCTAAATAAACACCGGCTCAATG
1 CCTGCTAAATAAACACCGGCTCAAGG
*
51385139 CCTGCTAAAT-AACTACCGACTCAAGG
1 CCTGCTAAATAAAC-ACCGGCTCAAGG
51385165 CCTGCT
1 CCTGCT
51385171 TTTCCAGTAT
Statistics
Matches: 177, Mismatches: 36, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
25 3 0.02
26 174 0.98
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (26 bp):
CCTGCTAAATAAACACCGGCTCAAGG
Found at i:51387411 original size:42 final size:42
Alignment explanation
Indices: 51387352--51387573 Score: 291
Period size: 42 Copynumber: 5.5 Consensus size: 42
51387342 ATTCATTGGT
51387352 GGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAGGG
51387394 GGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAGGG
* * *
51387436 GGTTGCTAAGTGTTGATCCCACCGTATTTTAAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAGGG
* * *
51387478 GGTTGCTAAGTTCTGATTCC-CCG-A--TT-CAT-T---GGT
1 GGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAGGG
* **
51387511 GGTTGCTAAGTGCTGATTCCACCGTATTTTTGAATGTGAAAAG
1 GGTTGCTAAGTGCTGATTCCACCGTA-TTTTAAATGTGAAGGG
51387554 GGTTGCTAAGTGCTGATTCC
1 GGTTGCTAAGTGCTGATTCC
51387574 CCGAATCACT
Statistics
Matches: 156, Mismatches: 14, Indels: 19
0.83 0.07 0.10
Matches are distributed among these distances:
33 20 0.13
34 3 0.02
35 1 0.01
36 1 0.01
37 2 0.01
38 4 0.03
39 2 0.01
40 2 0.01
41 3 0.02
42 98 0.63
43 20 0.13
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.35
Consensus pattern (42 bp):
GGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAGGG
Found at i:51387570 original size:76 final size:75
Alignment explanation
Indices: 51387436--51387610 Score: 260
Period size: 76 Copynumber: 2.3 Consensus size: 75
51387426 ATGTGAAGGG
* * * *
51387436 GGTTGCTAAGTGTTGATCCCACCGTATTTTAAATGTGAAAGGGGTTGCTAAGTTCTGATTCCCCG
1 GGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAAAGGGTTGCTAAGTGCTGATTCCCCG
* * *
51387501 ATTCATTGGT
66 AATCACTAGT
*
51387511 GGTTGCTAAGTGCTGATTCCACCGTATTTTTGAATGTGAAAAGGGTTGCTAAGTGCTGATTCCCC
1 GGTTGCTAAGTGCTGATTCCACCGTA-TTTTAAATGTGAAAAGGGTTGCTAAGTGCTGATTCCCC
51387576 GAATCACTAGT
65 GAATCACTAGT
*
51387587 GGTTGCTAAGTGCTGAATCCACCG
1 GGTTGCTAAGTGCTGATTCCACCG
51387611 ATAACGGATA
Statistics
Matches: 90, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
75 24 0.27
76 66 0.73
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (75 bp):
GGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAAAGGGTTGCTAAGTGCTGATTCCCCG
AATCACTAGT
Found at i:51389915 original size:22 final size:22
Alignment explanation
Indices: 51389890--51389940 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
51389880 AAGTATTTTT
* *
51389890 TTTAACAAAATCTCATAAATAA
1 TTTAACAAAAACTAATAAATAA
** *
51389912 TTTAGTAAAAAGTAATAAATAA
1 TTTAACAAAAACTAATAAATAA
51389934 TTTAACA
1 TTTAACA
51389941 TATTATAGCT
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.55, C:0.08, G:0.04, T:0.33
Consensus pattern (22 bp):
TTTAACAAAAACTAATAAATAA
Found at i:51390321 original size:10 final size:10
Alignment explanation
Indices: 51390306--51390331 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
51390296 AAAAAAATGT
51390306 TATAAATTAA
1 TATAAATTAA
51390316 TATAAATTAA
1 TATAAATTAA
51390326 TATAAA
1 TATAAA
51390332 CTCATATCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
TATAAATTAA
Found at i:51397109 original size:14 final size:14
Alignment explanation
Indices: 51397090--51397117 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
51397080 TCAATTTTTT
51397090 AATGAATTATTAAA
1 AATGAATTATTAAA
51397104 AATGAATTATTAAA
1 AATGAATTATTAAA
51397118 TATAACTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (14 bp):
AATGAATTATTAAA
Found at i:51400902 original size:106 final size:107
Alignment explanation
Indices: 51400382--51400901 Score: 796
Period size: 106 Copynumber: 4.9 Consensus size: 107
51400372 TGGATTTAGA
* * * *
51400382 TTTAAAAGGATATTTTGTTATTTGGTCAAACGAAAAAATCGAAACCCAACACATTAGGGCACGTT
1 TTTAAAAGGATATTTGGCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGGGCACGTT
51400447 TTCTCGAATTTCCAAACAG-AAAATATTGCCTTACTTTGAAAT
66 TTCTCGAATTTCCAAAC-GCAAAATATTGCCTTACTTTGAAAT
* *
51400489 TTTAAAAAGGATATTTGACTATTTGGTCGAACGAAAAAAAATCGAAACCCAGCACATTAGGACAC
1 TTT-AAAAGGATATTTGGCTATTTGGTCGAACG--AAAAAATCGAAACCCAGCACATTAGGGCAC
*
51400554 GTTTTCTCGAATTTCCAAATGCAAAATATTGCCTTACTTTGAAAT
63 GTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAAT
* ** *
51400599 TTTAAAAGGATATTTGGCTAATTGGTCGAACG-TGAAATCGAAACCCAGCACGTTAGGGCACGTT
1 TTTAAAAGGATATTTGGCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGGGCACGTT
51400663 TTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAAT
66 TTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAAT
* ** * *
51400705 TTTAAAAGGATATTTGGCTAATTGGTCGAACG-TGAAATCGAAACCCAGCACGTTAGGGCACATT
1 TTTAAAAGGATATTTGGCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGGGCACGTT
* * *
51400769 TTCTCGAATTTCTAAACACAAAATATTACCTTACTTTGAAAT
66 TTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAAT
*
51400811 TTTAAAAGGATATTTGGCTATTTGGTCGAACGAAAAAATCGAAACCTAGCACATTA-GGCACGTT
1 TTTAAAAGGATATTTGGCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGGGCACGTT
51400875 TTCTCGAATTTCCAAACGCAAAATATT
66 TTCTCGAATTTCCAAACGCAAAATATT
51400902 AATTTATTTA
Statistics
Matches: 382, Mismatches: 26, Indels: 11
0.91 0.06 0.03
Matches are distributed among these distances:
106 234 0.61
107 22 0.06
108 25 0.07
109 28 0.07
110 73 0.19
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.31
Consensus pattern (107 bp):
TTTAAAAGGATATTTGGCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGGGCACGTT
TTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAAT
Found at i:51400966 original size:21 final size:21
Alignment explanation
Indices: 51400942--51400981 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
51400932 GTATGGTGTT
51400942 AATATGTATAATG-GAATAACA
1 AATATG-ATAATGTGAATAACA
51400963 AATATGATAATGTGAATAA
1 AATATGATAATGTGAATAA
51400982 AATTAATATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.53, C:0.03, G:0.15, T:0.30
Consensus pattern (21 bp):
AATATGATAATGTGAATAACA
Found at i:51401038 original size:16 final size:15
Alignment explanation
Indices: 51400995--51401038 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
51400985 TAATATGAGC
* *
51400995 AAAAACGAAAAACAA
1 AAAAAAGAAAAATAA
*
51401010 AAAAAATAAAAATAA
1 AAAAAAGAAAAATAA
51401025 AAAAAAGAACAAAT
1 AAAAAAGAA-AAAT
51401039 CAATCATGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
15 20 0.83
16 4 0.17
ACGTcount: A:0.82, C:0.07, G:0.05, T:0.07
Consensus pattern (15 bp):
AAAAAAGAAAAATAA
Found at i:51401308 original size:3 final size:3
Alignment explanation
Indices: 51401300--51401331 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
51401290 AAATAGAAGT
51401300 ATA ATA ATA ATA ATA ATA ATA ATA ATCA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA A
51401332 GATAACAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:51402906 original size:44 final size:42
Alignment explanation
Indices: 51402846--51403102 Score: 180
Period size: 44 Copynumber: 6.0 Consensus size: 42
51402836 ATCTTTCATC
* * * *
51402846 TTCAATCTTCTCCACTGCAACTTTAGGGAGATAAGATTGGTAT
1 TTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGATTGGT-T
*
51402889 CTTCAGCCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTT
1 -TTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGA--T-TGGTT
* * * * *
51402935 TTAATTC-ACTCCACTGCAACTTCAGAGAGATAGGATTGACTT
1 TTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGATTG-GTT
* * * * * *
51402977 CTTCTGTCTGCTCCATTGTAACTTCAGGGAGATAAGACTGG-A
1 -TTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGATTGGTT
* * *
51403019 TGC-GATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTGGTT
1 TTCAG-TCTGCTCCACTGCAACTTCAGAGAGATAAGA--T-TGGTT
* * * *
51403064 TT-AATCCGCTCCACTGCAACTTTAGAGAGATAGGATTGG
1 TTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGATTGG
51403103 CTTCTTTAAT
Statistics
Matches: 166, Mismatches: 35, Indels: 27
0.73 0.15 0.12
Matches are distributed among these distances:
40 1 0.01
41 33 0.20
42 4 0.02
43 4 0.02
44 113 0.68
45 5 0.03
46 2 0.01
47 4 0.02
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.31
Consensus pattern (42 bp):
TTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGATTGGTT
Found at i:51403139 original size:129 final size:128
Alignment explanation
Indices: 51402896--51403142 Score: 345
Period size: 129 Copynumber: 1.9 Consensus size: 128
51402886 TATCTTCAGC
*
51402896 CTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATTCACTCCACTGCAACTTCAGA
1 CTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCACTCCACTGCAACTTCAGA
* **
51402961 GAGATAGGATTGACTTCTTCTGTCTGCTCCATTGTAACTTCAGGGAGATAAGACTGGATGCGAT
66 GAGATAGGATTGACTTCTTCTATCTGCTCCATACTAACTT-AGGGAGATAAGACTGGATGCGAT
* * * *
51403025 CTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTTAGA
1 CTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCACTCCACTGCAACTTCAGA
* * *
51403090 GAGATAGGATTGGCTTCTT-TAATCTGCTTCCCTACTACCTT-GGGAAGATAAGA
66 GAGATAGGATTGACTTCTTCT-ATCTGC-TCCATACTAACTTAGGG-AGATAAGA
51403143 TTCCATCTTC
Statistics
Matches: 104, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
128 4 0.04
129 91 0.88
130 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.31
Consensus pattern (128 bp):
CTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCACTCCACTGCAACTTCAGA
GAGATAGGATTGACTTCTTCTATCTGCTCCATACTAACTTAGGGAGATAAGACTGGATGCGAT
Found at i:51403207 original size:44 final size:43
Alignment explanation
Indices: 51403159--51403353 Score: 121
Period size: 44 Copynumber: 4.4 Consensus size: 43
51403149 CTTCGATCTG
51403159 CTCCACTACTGCTTAGGGAGACAGGATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGAGACAGGATCT-CAATCTTCAACCTA
* * * * * *
51403203 CTCCACTGCTGCTCAAGGAGATAGGA-CT-AATGGCTTAAATCTGA
1 CTCCACTACTGCTTAGGGAGACAGGATCTCAAT--CTTCAACCT-A
* * * * ** * *
51403247 TTCCGCACTA-T-CTTAGGAAGATAAGAT-TCACCATCTTTGATCTG
1 CT-C-CACTACTGCTTAGGGAGACAGGATCTCA--ATCTTCAACCTA
*
51403291 CTCCACTACTGCTTAGGGAGACAGAATCTACAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGAGACAGGATCT-CAATCTTCAACCTA
* *
51403335 CTCCACTGCTGCTCAGGGA
1 CTCCACTACTGCTTAGGGA
51403354 TATAGGACCG
Statistics
Matches: 112, Mismatches: 26, Indels: 26
0.68 0.16 0.16
Matches are distributed among these distances:
41 3 0.03
42 5 0.04
43 11 0.10
44 74 0.66
45 11 0.10
46 6 0.05
47 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (43 bp):
CTCCACTACTGCTTAGGGAGACAGGATCTCAATCTTCAACCTA
Found at i:51403441 original size:129 final size:130
Alignment explanation
Indices: 51403110--51403468 Score: 537
Period size: 129 Copynumber: 2.8 Consensus size: 130
51403100 TGGCTTCTTT
51403110 AATCTGCTTCCCTACTACCTTGGGAAGATAAGA-TT-CCATCTTCGATCTGCTCCACTACTGCTT
1 AATCTGCTTCCCTACTACCTTGGGAAGATAAGATTTACCATCTTCGATCTGCTCCACTACTGCTT
* *
51403173 AGGGAGACAGGATCTGCAATCTTCAACCTACTCCACTGCTGCTCAAGGAGATAGGACTAATGGCT
66 AGGGAGACAGGATCTACAATCTTCAACCTACTCCACTGCTGCTCAAGGAGATAGGAC--ACGGCT
51403238 TA
129 TA
* * * * *
51403240 AATCTGATTCCGC-ACTATCTTAGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCT
1 AATCTGCTTCC-CTACTACCTTGGGAAGATAAGATTTACCATCTTCGATCTGCTCCACTACTGCT
* * *
51403304 TAGGGAGACAGAATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGATATAGGAC-CGGCTT
65 TAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTGCTGCTCAAGGAGATAGGACACGGCTT
51403368 A
130 A
* *
51403369 AATCTGCTTCCTTACTACCTTGGGAAGATAAGATTTACCATCTTCGATATGCTCCACTACTGCTT
1 AATCTGCTTCCCTACTACCTTGGGAAGATAAGATTTACCATCTTCGATCTGCTCCACTACTGCTT
* *
51403434 AGGGAGACAGGACCTACAATCTTCGACCTACTCCA
66 AGGGAGACAGGATCTACAATCTTCAACCTACTCCA
51403469 GGGAGATAGG
Statistics
Matches: 205, Mismatches: 20, Indels: 9
0.88 0.09 0.04
Matches are distributed among these distances:
129 95 0.46
130 28 0.14
131 2 0.01
132 80 0.39
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (130 bp):
AATCTGCTTCCCTACTACCTTGGGAAGATAAGATTTACCATCTTCGATCTGCTCCACTACTGCTT
AGGGAGACAGGATCTACAATCTTCAACCTACTCCACTGCTGCTCAAGGAGATAGGACACGGCTTA
Found at i:51404781 original size:22 final size:21
Alignment explanation
Indices: 51404753--51404798 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
51404743 CTCTTTTTTC
*
51404753 TTTTCTTCTTCTTCTTTCCTTT
1 TTTTCTTCTTCTTCCTT-CTTT
*
51404775 TTTTCTTCTTTTTCCTTCTTT
1 TTTTCTTCTTCTTCCTTCTTT
51404796 TTT
1 TTT
51404799 CTTTGTTCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTTCTTCTTCTTCCTTCTTT
Found at i:51404788 original size:18 final size:18
Alignment explanation
Indices: 51404744--51404815 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
51404734 CCTTGGCCTC
* *
51404744 TCTTTTTTCTTTTCTTCT
1 TCTTTTTCCTTTTTTTCT
51404762 TCTTCTTTCCTTTTTTTCT
1 TCTT-TTTCCTTTTTTTCT
*
51404781 TCTTTTTCCTTCTTTT-T
1 TCTTTTTCCTTTTTTTCT
51404798 TCTTTGTTCTCTTTTTTT
1 TCTTT-TTC-CTTTTTTT
51404816 TAAGTATTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
17 6 0.13
18 18 0.38
19 23 0.49
ACGTcount: A:0.00, C:0.22, G:0.01, T:0.76
Consensus pattern (18 bp):
TCTTTTTCCTTTTTTTCT
Found at i:51404792 original size:26 final size:26
Alignment explanation
Indices: 51404745--51404795 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
51404735 CTTGGCCTCT
*
51404745 CTTTTTTCTTTTCTTCTTCTTCTTTC
1 CTTTTTTCTCTTCTTCTTCTTCTTTC
*
51404771 CTTTTTT-TCTTCTTTTTCCTTCTTT
1 CTTTTTTCTCTTCTTCTT-CTTCTTT
51404796 TTTCTTTGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (26 bp):
CTTTTTTCTCTTCTTCTTCTTCTTTC
Found at i:51404793 original size:29 final size:26
Alignment explanation
Indices: 51404746--51404815 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 26
51404736 TTGGCCTCTC
*
51404746 TTTTTTCTTTTCTTCTTCTTCTTTCCT
1 TTTTTTCTTTTTTTCTTCTT-TTTCCT
*
51404773 TTTTTTCTTCTTTTTCCTTCTTTTTTCT
1 TTTTTTCTT-TTTTT-CTTCTTTTTCCT
*
51404801 TTGTTCTCTTTTTTT
1 TT-TTTTCTTTTTTT
51404816 TAAGTATTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
27 9 0.24
28 16 0.43
29 12 0.32
ACGTcount: A:0.00, C:0.21, G:0.01, T:0.77
Consensus pattern (26 bp):
TTTTTTCTTTTTTTCTTCTTTTTCCT
Found at i:51404816 original size:29 final size:29
Alignment explanation
Indices: 51404750--51404816 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
51404740 CCTCTCTTTT
* *
51404750 TTCTTTTCTTCTTCTTCTTTCCTTTTTTTC
1 TTCTTTT-TCCTTCTTCTTTCCTTTTTCTC
*
51404780 TTCTTTTTCCTTCTT-TTTTCTTTGTTCTC
1 TTCTTTTTCCTTCTTCTTTCCTTT-TTCTC
*
51404809 TTTTTTTT
1 TTCTTTTT
51404817 AAGTATTTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 7 0.22
29 18 0.56
30 7 0.22
ACGTcount: A:0.00, C:0.22, G:0.01, T:0.76
Consensus pattern (29 bp):
TTCTTTTTCCTTCTTCTTTCCTTTTTCTC
Found at i:51405999 original size:106 final size:106
Alignment explanation
Indices: 51405794--51406031 Score: 415
Period size: 106 Copynumber: 2.2 Consensus size: 106
51405784 GGCTAATTGG
51405794 TCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTAAAAGGATATTTGGCTAATTGGT
1 TCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTAAAAGGATATTTGGCTAATTGGT
*** *
51405859 CGAACGTGAAATCGAAACCCAGCACGTTAGGGCACGTTTTC
66 CGAACAAAAAATCGAAACCCAGCACATTAGGGCACGTTTTC
*
51405900 TCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTAAAAGGATATTTGGCTATTTGGT
1 TCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTAAAAGGATATTTGGCTAATTGGT
51405965 CGAACAAAAAAATCGAAACCCAGCACATTA-GGCACGTTTTC
66 CGAAC-AAAAAATCGAAACCCAGCACATTAGGGCACGTTTTC
51406006 TCGAATTTCCAAACGCAAAATATTGC
1 TCGAATTTCCAAACGCAAAATATTGC
51406032 TTTATTTAGA
Statistics
Matches: 126, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
106 106 0.84
107 20 0.16
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (106 bp):
TCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTAAAAGGATATTTGGCTAATTGGT
CGAACAAAAAATCGAAACCCAGCACATTAGGGCACGTTTTC
Found at i:51406094 original size:21 final size:21
Alignment explanation
Indices: 51406070--51406109 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
51406060 GTATGGTGTT
51406070 AATATGTATAATG-GAATAACA
1 AATATG-ATAATGTGAATAACA
51406091 AATATGATAATGTGAATAA
1 AATATGATAATGTGAATAA
51406110 AATTAATATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.53, C:0.03, G:0.15, T:0.30
Consensus pattern (21 bp):
AATATGATAATGTGAATAACA
Found at i:51406430 original size:3 final size:3
Alignment explanation
Indices: 51406422--51406465 Score: 70
Period size: 3 Copynumber: 14.3 Consensus size: 3
51406412 AAATAGAAGT
*
51406422 ATA ATA ATA ATA ATA ATA ATA ATG ATA ATA ATA ATA ATCA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA A
51406466 GATAACAAGA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:51407134 original size:12 final size:12
Alignment explanation
Indices: 51407117--51407142 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
51407107 GTAAAAAAAC
51407117 TTTTTTTTGCTA
1 TTTTTTTTGCTA
51407129 TTTTTTTTGCTA
1 TTTTTTTTGCTA
51407141 TT
1 TT
51407143 ACGAAATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.08, T:0.77
Consensus pattern (12 bp):
TTTTTTTTGCTA
Found at i:51421255 original size:28 final size:28
Alignment explanation
Indices: 51421213--51421299 Score: 120
Period size: 28 Copynumber: 3.1 Consensus size: 28
51421203 ATCACCAGAA
* *
51421213 AAGAGGGAAGCCCACCAAAGACTCTCTT
1 AAGAGGGAAGACCACCAAGGACTCTCTT
* *
51421241 AAGAGGGGAGTCCACCAAGGACTCTCTT
1 AAGAGGGAAGACCACCAAGGACTCTCTT
* *
51421269 AAGAGAGAAGACCACCAAGGACTATCTT
1 AAGAGGGAAGACCACCAAGGACTCTCTT
51421297 AAG
1 AAG
51421300 TGGATTGTCC
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 52 1.00
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (28 bp):
AAGAGGGAAGACCACCAAGGACTCTCTT
Found at i:51423093 original size:50 final size:50
Alignment explanation
Indices: 51423039--51423142 Score: 115
Period size: 50 Copynumber: 2.1 Consensus size: 50
51423029 TCGGCCCATT
51423039 TTTTAATAAACA-CTAAAAATTTATTTTAAAAAT-AAAAAATAAAAAAAT-TA
1 TTTTAA-AAACATCTAAAAA--TATTTTAAAAATAAAAAAATAAAAAAATATA
* * * *
51423089 TTTTAAAAATATTTTAAAAATATTTTAAAATTAAAAAAATAAAAATATATA
1 TTTTAAAAACA-TCTAAAAATATTTTAAAAATAAAAAAATAAAAAAATATA
51423140 TTT
1 TTT
51423143 ATTATATCCG
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
49 15 0.33
50 20 0.43
51 11 0.24
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (50 bp):
TTTTAAAAACATCTAAAAATATTTTAAAAATAAAAAAATAAAAAAATATA
Found at i:51423101 original size:11 final size:11
Alignment explanation
Indices: 51423081--51423118 Score: 67
Period size: 11 Copynumber: 3.4 Consensus size: 11
51423071 TAAAAAATAA
51423081 AAAAATTATTTT
1 AAAAA-TATTTT
51423093 AAAAATATTTT
1 AAAAATATTTT
51423104 AAAAATATTTT
1 AAAAATATTTT
51423115 AAAA
1 AAAA
51423119 TTAAAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 21 0.81
12 5 0.19
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:51432770 original size:16 final size:17
Alignment explanation
Indices: 51432746--51432778 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
51432736 TTCAATTAGT
*
51432746 TTAATTAATTTT-TCAA
1 TTAAATAATTTTCTCAA
51432762 TTAAATAATTTTCTCAA
1 TTAAATAATTTTCTCAA
51432779 CCCAATTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52
Consensus pattern (17 bp):
TTAAATAATTTTCTCAA
Found at i:51434091 original size:24 final size:25
Alignment explanation
Indices: 51434038--51434100 Score: 69
Period size: 24 Copynumber: 2.6 Consensus size: 25
51434028 TACATAGATA
* *
51434038 TTTTCCTAGTTAAA--TTGAGTTTC
1 TTTTCCTAGTTAAACTTTGACTATC
*
51434061 TTCTCCTAGTTAAACTTTG-CTATC
1 TTTTCCTAGTTAAACTTTGACTATC
*
51434085 TTTTCCTAGTTGAACT
1 TTTTCCTAGTTAAACT
51434101 CTGATTATAC
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
23 13 0.39
24 17 0.52
25 3 0.09
ACGTcount: A:0.21, C:0.19, G:0.11, T:0.49
Consensus pattern (25 bp):
TTTTCCTAGTTAAACTTTGACTATC
Found at i:51447282 original size:135 final size:138
Alignment explanation
Indices: 51447124--51447387 Score: 329
Period size: 143 Copynumber: 1.9 Consensus size: 138
51447114 ATAAAACTAA
* * * *
51447124 AAATTACAAATGTATTTAGAAGAGGAGAAATTGAACTTGGGATTCAATGAT-AA-A-ATCA-TAA
1 AAATTACAAATATATTTAGAAGAGGAGAAATTGAAATTGGGACTCAAGGATAAACATATCATTAA
* * **
51447185 TTATTTAACTAAGGGAGCTAATATGTTAAAAATGTTAATTAAAAATAATAAAAAAGCTTAAAACA
66 TTATTTAACCAAAGGAGCTAATATGTTAAAAAAATTAATTAAAAATAAT-AAAAAGCTTAAAACA
51447250 ATATGAAAT
130 ATATGAAAT
* * * *
51447259 AAATTATAAATATGTTTAGAAGAGGAGGAATTGAAATTGGGACTCGAGGATAAAATCATTATCAT
1 AAATTACAAATATATTTAGAAGAGGAGAAATTGAAATTGGGACTCAAGGAT-AAA-CA-TATCA-
* *
51447324 TTAATTATTTAACCAAATGAGCTAATATGTTAAAAAAATTAATTAAAATTAATAAAAAGCTTAA
62 TTAATTATTTAACCAAAGGAGCTAATATGTTAAAAAAATTAATTAAAAATAATAAAAAGCTTAA
51447388 CATGAAATAA
Statistics
Matches: 107, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
135 43 0.40
137 2 0.02
139 1 0.01
141 4 0.04
142 11 0.10
143 46 0.43
ACGTcount: A:0.49, C:0.06, G:0.14, T:0.31
Consensus pattern (138 bp):
AAATTACAAATATATTTAGAAGAGGAGAAATTGAAATTGGGACTCAAGGATAAACATATCATTAA
TTATTTAACCAAAGGAGCTAATATGTTAAAAAAATTAATTAAAAATAATAAAAAGCTTAAAACAA
TATGAAAT
Found at i:51447663 original size:14 final size:14
Alignment explanation
Indices: 51447644--51447679 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
51447634 ACGCAAACAA
51447644 AAATAAAATAAGAT
1 AAATAAAATAAGAT
51447658 AAATAAAATAAGAT
1 AAATAAAATAAGAT
51447672 AAATAAAA
1 AAATAAAA
51447680 ACCATCCCGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (14 bp):
AAATAAAATAAGAT
Found at i:51453581 original size:17 final size:17
Alignment explanation
Indices: 51453559--51453596 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
51453549 TAAAAAACTT
51453559 AATAAA-TAATATAGATA
1 AATAAATTAATATA-ATA
*
51453576 AATAAATTTATATAATA
1 AATAAATTAATATAATA
51453593 AATA
1 AATA
51453597 TACTAATGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (17 bp):
AATAAATTAATATAATA
Found at i:51455646 original size:34 final size:32
Alignment explanation
Indices: 51455578--51455647 Score: 79
Period size: 34 Copynumber: 2.1 Consensus size: 32
51455568 TTATATAAAT
*
51455578 TTTTATGTTTTGTAATTTTGTAAAATTTCTTC
1 TTTTATGTTTTGTAATTTTGTAAAAATTCTTC
* *
51455610 TTTTATAGTTTTTTAATCTTTTTAACAAATT-TTC
1 TTTTAT-GTTTTGTAAT-TTTGTAA-AAATTCTTC
51455644 TTTT
1 TTTT
51455648 TTTAAAATCA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
32 6 0.19
33 9 0.28
34 13 0.41
35 4 0.12
ACGTcount: A:0.23, C:0.07, G:0.06, T:0.64
Consensus pattern (32 bp):
TTTTATGTTTTGTAATTTTGTAAAAATTCTTC
Found at i:51465372 original size:46 final size:46
Alignment explanation
Indices: 51465306--51465513 Score: 341
Period size: 46 Copynumber: 4.6 Consensus size: 46
51465296 TTTGAGTACT
* * *
51465306 TCTGATC-AGTGGCAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
51465351 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
* *
51465397 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
51465443 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
*
51465489 TCTGAT-AAGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
51465514 ATCATACGTA
Statistics
Matches: 154, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
44 12 0.08
45 13 0.08
46 129 0.84
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (46 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
Found at i:51465475 original size:92 final size:92
Alignment explanation
Indices: 51465306--51465513 Score: 377
Period size: 92 Copynumber: 2.3 Consensus size: 92
51465296 TTTGAGTACT
*
51465306 TCTGATC-AGTGGCAAAGTGATAAGTGTTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
51465370 GATAAGTGGTAGCCTTAGCTACACTTA
66 GATAAGTGGTAGCCTTAGCTACACTTA
51465397 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
51465462 GATAAGTGGTAGCCTTAGCTACACTTA
66 GATAAGTGGTAGCCTTAGCTACACTTA
*
51465489 TCTGAT-AAGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
51465514 ATCATACGTA
Statistics
Matches: 114, Mismatches: 2, Indels: 3
0.96 0.02 0.03
Matches are distributed among these distances:
90 12 0.11
91 13 0.11
92 89 0.78
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (92 bp):
TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
GATAAGTGGTAGCCTTAGCTACACTTA
Found at i:51473854 original size:29 final size:28
Alignment explanation
Indices: 51473817--51473874 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 28
51473807 ATATACATAT
* * *
51473817 TTTGTGGATGTAATTAGAATATTTTGAAG
1 TTTGAGGATGTAACTAGAAT-TTTTAAAG
51473846 TTTGAGGATGTAACTAGAATTTTTAAAG
1 TTTGAGGATGTAACTAGAATTTTTAAAG
51473874 T
1 T
51473875 CTGAAAATCA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 8 0.31
29 18 0.69
ACGTcount: A:0.33, C:0.02, G:0.22, T:0.43
Consensus pattern (28 bp):
TTTGAGGATGTAACTAGAATTTTTAAAG
Found at i:51477459 original size:15 final size:16
Alignment explanation
Indices: 51477439--51477470 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
51477429 GGTTCTAGAA
51477439 AAAAAAAAGAA-AAAG
1 AAAAAAAAGAATAAAG
51477454 AAAAAAAAGAATAAAG
1 AAAAAAAAGAATAAAG
51477470 A
1 A
51477471 CTCAAAATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.84, C:0.00, G:0.12, T:0.03
Consensus pattern (16 bp):
AAAAAAAAGAATAAAG
Found at i:51480365 original size:18 final size:17
Alignment explanation
Indices: 51480342--51480376 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
51480332 GAAAAAAGTA
51480342 CAAAAAAAAAAGCAAAAG
1 CAAAAAAAAAAG-AAAAG
*
51480360 CAAAAAGAAAAGAAAAG
1 CAAAAAAAAAAGAAAAG
51480377 AAGAATTGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.77, C:0.09, G:0.14, T:0.00
Consensus pattern (17 bp):
CAAAAAAAAAAGAAAAG
Found at i:51480409 original size:7 final size:7
Alignment explanation
Indices: 51480399--51480440 Score: 84
Period size: 7 Copynumber: 6.0 Consensus size: 7
51480389 AGAAGATAGA
51480399 TGAAGAG
1 TGAAGAG
51480406 TGAAGAG
1 TGAAGAG
51480413 TGAAGAG
1 TGAAGAG
51480420 TGAAGAG
1 TGAAGAG
51480427 TGAAGAG
1 TGAAGAG
51480434 TGAAGAG
1 TGAAGAG
51480441 GCTTTATTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 35 1.00
ACGTcount: A:0.43, C:0.00, G:0.43, T:0.14
Consensus pattern (7 bp):
TGAAGAG
Found at i:51493750 original size:40 final size:40
Alignment explanation
Indices: 51493713--51493898 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
51493703 GCTACTCGTT
* *
51493713 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
51493753 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
51493793 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*** * * * *
51493833 CAAATGCCTTC-GGATCTTGGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
51493874 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
51493899 CATCATTCAA
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:51499193 original size:41 final size:42
Alignment explanation
Indices: 51499081--51499208 Score: 152
Period size: 41 Copynumber: 3.0 Consensus size: 42
51499071 GACTCGTACA
** *
51499081 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACA-CAAATCAAATATCG
* *
51499124 ATGCCACTGTCCCAGACAG-GGTCATACACAAATCAAATA-CG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACAAATCAAATATCG
* *
51499165 ATGCCAATGTCCCAGACGTGGTCTTACACGAAAACACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACAC-AAATCAAATATCG
51499208 A
1 A
51499209 AATCCTATGT
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
40 1 0.01
41 27 0.38
42 16 0.22
43 27 0.38
44 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACAAATCAAATATCG
Found at i:51502704 original size:10 final size:10
Alignment explanation
Indices: 51502691--51502754 Score: 56
Period size: 10 Copynumber: 5.7 Consensus size: 10
51502681 TCATTTCCTT
51502691 TTTCTTTTTC
1 TTTCTTTTTC
51502701 TTTCTTTCTTC
1 TTTCTTT-TTC
*
51502712 TTTTTTGTTTC
1 TTTCTT-TTTC
51502723 GTTTCTATCTTTC
1 -TTTCT-T-TTTC
51502736 TATTTCTTTTTC
1 --TTTCTTTTTC
51502748 TTTCTTT
1 TTTCTTT
51502755 ATTTTGTTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
10 14 0.31
11 11 0.24
12 9 0.20
13 6 0.13
14 5 0.11
ACGTcount: A:0.03, C:0.19, G:0.03, T:0.75
Consensus pattern (10 bp):
TTTCTTTTTC
Found at i:51502704 original size:17 final size:18
Alignment explanation
Indices: 51502679--51502750 Score: 62
Period size: 17 Copynumber: 4.1 Consensus size: 18
51502669 TCCTTCCTTC
51502679 TTTCATTTCCTTT-TTCTT
1 TTTCATTT-CTTTCTTCTT
51502697 TTTC-TTTCTTTCTTCTT
1 TTTCATTTCTTTCTTCTT
**
51502714 TTTTGTTTCGTTTCTATCTT
1 TTTCATTTC-TTTCT-TCTT
*
51502734 TCT-ATTTCTTT-TTCTT
1 TTTCATTTCTTTCTTCTT
51502750 T
1 T
51502751 CTTTATTTTG
Statistics
Matches: 47, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
16 9 0.19
17 12 0.26
18 11 0.23
19 9 0.19
20 6 0.13
ACGTcount: A:0.04, C:0.19, G:0.03, T:0.74
Consensus pattern (18 bp):
TTTCATTTCTTTCTTCTT
Found at i:51506342 original size:76 final size:76
Alignment explanation
Indices: 51506215--51506361 Score: 240
Period size: 76 Copynumber: 1.9 Consensus size: 76
51506205 CATCCTGTGT
* *
51506215 TTCGTAAGCCAATCCATGCCCAAAATCACATCAAAATCACCAAACGGCATTATCAACAAATCAAC
1 TTCGTAAGCCAATCCATACCCAAAATCACATCAAAATCACCAAACGACATTATCAACAAATCAAC
51506280 AGGGAACATGC
66 AGGGAACATGC
* * * *
51506291 TTCGTAAGTCAATCCATACCTAAAATCATATCAAAATCACCAAACGACATTATCAACAAATCAAT
1 TTCGTAAGCCAATCCATACCCAAAATCACATCAAAATCACCAAACGACATTATCAACAAATCAAC
51506356 AGGGAA
66 AGGGAA
51506362 TGCCATATTC
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
76 65 1.00
ACGTcount: A:0.44, C:0.26, G:0.10, T:0.20
Consensus pattern (76 bp):
TTCGTAAGCCAATCCATACCCAAAATCACATCAAAATCACCAAACGACATTATCAACAAATCAAC
AGGGAACATGC
Found at i:51516899 original size:5 final size:6
Alignment explanation
Indices: 51516882--51516907 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
51516872 TTGATGATTC
51516882 TATTTT TATTTT TATTTT TATTTT TA
1 TATTTT TATTTT TATTTT TATTTT TA
51516908 AAAAATTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
TATTTT
Found at i:51520391 original size:17 final size:17
Alignment explanation
Indices: 51520364--51520424 Score: 61
Period size: 17 Copynumber: 3.4 Consensus size: 17
51520354 TTCTCCCCTA
51520364 TTTACTTTCCCTCAAACT
1 TTTACTTTCCC-CAAACT
*
51520382 TTTA-TTTCCCAAAACTT
1 TTTACTTTCCCCAAAC-T
*
51520399 TTTATTTTCCCCCTAAACT
1 TTTACTTT-CCCC-AAACT
51520418 TTTACTT
1 TTTACTT
51520425 CTCACCCTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
16 4 0.11
17 11 0.31
18 7 0.19
19 10 0.28
20 4 0.11
ACGTcount: A:0.23, C:0.28, G:0.00, T:0.49
Consensus pattern (17 bp):
TTTACTTTCCCCAAACT
Found at i:51522925 original size:18 final size:20
Alignment explanation
Indices: 51522899--51522945 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 20
51522889 ACACGTTGGG
*
51522899 TTATTTATTGAAG-ACAAAA
1 TTATTTATTGAAGTAAAAAA
*
51522918 TT-TTTATTTAAGTAAAAAA
1 TTATTTATTGAAGTAAAAAA
51522937 TTATTTATT
1 TTATTTATT
51522946 TATTTTAGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 9 0.38
19 9 0.38
20 6 0.25
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (20 bp):
TTATTTATTGAAGTAAAAAA
Found at i:51528204 original size:21 final size:22
Alignment explanation
Indices: 51528171--51528211 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
51528161 ACTCATTAAA
**
51528171 TATCGATGGCTAC-TTATTTAG
1 TATCGATACCTACGTTATTTAG
51528192 TATCGATACCTACGTTATTT
1 TATCGATACCTACGTTATTT
51528212 TTCGGAACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.24, C:0.17, G:0.15, T:0.44
Consensus pattern (22 bp):
TATCGATACCTACGTTATTTAG
Found at i:51533931 original size:14 final size:14
Alignment explanation
Indices: 51533906--51533941 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
51533896 AATTAAAAAA
*
51533906 TAAAATTATTAAAT
1 TAAAAATATTAAAT
*
51533920 TATAAATATTAAAT
1 TAAAAATATTAAAT
51533934 TAAAAATA
1 TAAAAATA
51533942 ATATAATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
TAAAAATATTAAAT
Found at i:51534518 original size:7 final size:7
Alignment explanation
Indices: 51534508--51534532 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
51534498 CAAATATCAA
51534508 ATTTCAC
1 ATTTCAC
51534515 ATTTCAC
1 ATTTCAC
51534522 ATTTCAC
1 ATTTCAC
51534529 ATTT
1 ATTT
51534533 GACCAAAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.24, G:0.00, T:0.48
Consensus pattern (7 bp):
ATTTCAC
Found at i:51537621 original size:52 final size:52
Alignment explanation
Indices: 51537550--51537897 Score: 468
Period size: 52 Copynumber: 6.9 Consensus size: 52
51537540 ATCAAGTGAC
* **
51537550 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
51537602 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
51537654 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* **
51537700 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
51537752 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
*
51537798 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
** *
51537850 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
51537898 AGTGATAAGT
Statistics
Matches: 264, Mismatches: 20, Indels: 24
0.86 0.06 0.08
Matches are distributed among these distances:
46 85 0.32
52 179 0.68
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (52 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
Found at i:51537672 original size:98 final size:98
Alignment explanation
Indices: 51537602--51537908 Score: 438
Period size: 98 Copynumber: 3.1 Consensus size: 98
51537592 TGACAAGTGG
* *
51537602 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* * *
51537667 ATAGCTTCGGCTATACTTATCTGATCAAGTGAC
66 ATAGCTACGACTATACTGATCTGATCAAGTGAC
* **
51537700 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* * *
51537765 ATAGCTTCGGCTATACTTATCTGATCAAGTGAC
66 ATAGCTACGACTATACTGATCTGATCAAGTGAC
* *
51537798 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* * *
51537863 ATAGCTTTA-G-CTACACTTATCTGATCAAGAGAC
66 ATAGC--TACGACTATACTGATCTGATCAAGTGAC
51537896 AAAGTGATAAGTG
1 AAAGTGATAAGTG
51537909 GCTACACTTA
Statistics
Matches: 194, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
98 192 0.99
99 1 0.01
100 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (98 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
ATAGCTACGACTATACTGATCTGATCAAGTGAC
Found at i:51537756 original size:150 final size:144
Alignment explanation
Indices: 51537536--51537897 Score: 580
Period size: 150 Copynumber: 2.4 Consensus size: 144
51537526 TTTGAGTACT
51537536 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
51537601 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGT
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------AAAGTGATAAGT
*
51537666 AATAGCTTCGGCTATACTTA
125 AATAGCTTCGGCTACACTTA
51537686 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
51537751 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGATAGC
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTAATAGC
51537816 TTCGGCTACACTTA
131 TTCGGCTACACTTA
* *
51537830 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
1 TCTGATCAAGTGAC------AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGA
51537895 CAA
60 CAA
51537898 AGTGATAAGT
Statistics
Matches: 202, Mismatches: 4, Indels: 12
0.93 0.02 0.06
Matches are distributed among these distances:
144 44 0.22
150 158 0.78
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (144 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTAATAGC
TTCGGCTACACTTA
Found at i:51537916 original size:37 final size:37
Alignment explanation
Indices: 51537872--51538091 Score: 381
Period size: 37 Copynumber: 6.0 Consensus size: 37
51537862 GATAGCTTTA
*
51537872 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
51537909 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
51537946 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
51537983 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
51538020 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
51538057 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
51538092 ATCATACGTA
Statistics
Matches: 176, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
35 11 0.06
36 4 0.02
37 161 0.91
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:51555905 original size:32 final size:32
Alignment explanation
Indices: 51555869--51555954 Score: 93
Period size: 32 Copynumber: 2.7 Consensus size: 32
51555859 AAATTTTTCG
** *
51555869 GAAAATATTTTCAGAAAATCTGTCAAACAGCA
1 GAAAATATTTTCAGAAAATCAATCAAACACCA
* *
51555901 GAAAATATTTTACA-CAATTCAATCAAACACCA
1 GAAAATATTTT-CAGAAAATCAATCAAACACCA
*
51555933 GAAAATATTTTTCAGTAAATCA
1 GAAAATA-TTTTCAGAAAATCA
51555955 TTTTACAGAA
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
32 33 0.75
33 11 0.25
ACGTcount: A:0.48, C:0.16, G:0.08, T:0.28
Consensus pattern (32 bp):
GAAAATATTTTCAGAAAATCAATCAAACACCA
Found at i:51555988 original size:34 final size:35
Alignment explanation
Indices: 51555934--51556000 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
51555924 CAAACACCAG
*
51555934 AAAATATTTTTCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTTCAGTAAATCATTTTACAGAAAAGT
* *
51555969 AAAACATTTTTTAG-AAATCATTTTACGGAAAA
1 AAAACATTTTTCAGTAAATCATTTTACAGAAAA
51556001 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.36
Consensus pattern (35 bp):
AAAACATTTTTCAGTAAATCATTTTACAGAAAAGT
Found at i:51563094 original size:13 final size:13
Alignment explanation
Indices: 51563076--51563117 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
51563066 AGATTTTTCT
51563076 TAAATATTATCAC
1 TAAATATTATCAC
*
51563089 TAAATA--AT-TC
1 TAAATATTATCAC
51563099 TAAATATTATCAC
1 TAAATATTATCAC
51563112 TAAATA
1 TAAATA
51563118 ATTCAAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
10 7 0.29
11 2 0.08
12 2 0.08
13 13 0.54
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (13 bp):
TAAATATTATCAC
Found at i:51563103 original size:23 final size:23
Alignment explanation
Indices: 51563076--51563126 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
51563066 AGATTTTTCT
51563076 TAAATATTATCACTAAATAATTC
1 TAAATATTATCACTAAATAATTC
51563099 TAAATATTATCACTAAATAATTC
1 TAAATATTATCACTAAATAATTC
*
51563122 AAAAT
1 TAAAT
51563127 TTAAAAATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (23 bp):
TAAATATTATCACTAAATAATTC
Found at i:51566230 original size:42 final size:41
Alignment explanation
Indices: 51566171--51566279 Score: 132
Period size: 40 Copynumber: 2.7 Consensus size: 41
51566161 CATTTTTCCT
*
51566171 GAAATCGCGTCCACGTCAGCGCGATGTTAGGGGATGTGTCAG
1 GAAATCGCGTCCACGTCAGCGCGAT-TTAGCGGATGTGTCAG
* * *
51566213 GAAATCGCGTCCACGTCAGCGCG-TTTTGCTGATGTGTTAG
1 GAAATCGCGTCCACGTCAGCGCGATTTAGCGGATGTGTCAG
* *
51566253 AAAATCGCGTCCTCGT-AGGCGCGATTT
1 GAAATCGCGTCCACGTCA-GCGCGATTT
51566280 GTGTCCACAT
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
39 1 0.02
40 31 0.53
41 4 0.07
42 23 0.39
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.26
Consensus pattern (41 bp):
GAAATCGCGTCCACGTCAGCGCGATTTAGCGGATGTGTCAG
Found at i:51568597 original size:77 final size:77
Alignment explanation
Indices: 51568483--51568864 Score: 430
Period size: 77 Copynumber: 5.0 Consensus size: 77
51568473 TTTAGTTTGA
** * * * * *
51568483 CTGTCATTTTTACGAATCGCT-GATTTAATATCGCGACCTTCGATTTTCTAGCAGTTTGCTTGAT
1 CTGTCATTTTTACGGTTTGCTCGATTTAAGATCGCGACCTTCGATATTCTAACAGTTCGCTTGAT
*
51568547 TTAATATCACAG
66 TTAATATCGCAG
* * * * *
51568559 CTGTCATTATTATGGTTTGCTCGATTTAATATCACGACCTTCGATATTCTAACAATTCGCTTGAT
1 CTGTCATTTTTACGGTTTGCTCGATTTAAGATCGCGACCTTCGATATTCTAACAGTTCGCTTGAT
* *
51568624 TTAATATTGCCG
66 TTAATATCGCAG
* * * * *
51568636 CTGTCATTTTTACGGTTCGCTTGATTTAAGATCGCGACCTTTGATATTCTAACTGTTCACTTGAT
1 CTGTCATTTTTACGGTTTGCTCGATTTAAGATCGCGACCTTCGATATTCTAACAGTTCGCTTGAT
*
51568701 TTAATATTGC-G
66 TTAATATCGCAG
* * * * *
51568712 ACTGTCATTTTTAC-GTTTCGCTCGATATAAGATCGCGACATCCAATATTCTAACAGTTCGCTCG
1 -CTGTCATTTTTACGGTTT-GCTCGATTTAAGATCGCGACCTTCGATATTCTAACAGTTCGCTTG
51568776 ATTTAATATCGCGAG
64 ATTTAATATCGC-AG
* ** *
51568791 -TGTCATTTTCACGGTTTGCTCGATTTAAGATCATGACCTTCGATATTCTAACAGTTCGTTTGAT
1 CTGTCATTTTTACGGTTTGCTCGATTTAAGATCGCGACCTTCGATATTCTAACAGTTCGCTTGAT
*
51568855 TTAAGATCGC
66 TTAATATCGC
51568865 TGTCGAAACT
Statistics
Matches: 256, Mismatches: 44, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
76 20 0.08
77 231 0.90
78 4 0.02
79 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (77 bp):
CTGTCATTTTTACGGTTTGCTCGATTTAAGATCGCGACCTTCGATATTCTAACAGTTCGCTTGAT
TTAATATCGCAG
Found at i:51568660 original size:37 final size:37
Alignment explanation
Indices: 51568481--51568818 Score: 148
Period size: 37 Copynumber: 8.8 Consensus size: 37
51568471 GATTTAGTTT
** *
51568481 GACTGTCATTTTTACGAATCGC-TGATTTAATATCGC
1 GACTGTCATTTTTACGGTTCGCTTGATTTAATATTGC
* * **
51568517 GACCT-TCGATTTTCTAGCAGTTTGCTTGATTTAATATCAC
1 GA-CTGTC-ATTTT-TA-CGGTTCGCTTGATTTAATATTGC
* * * * **
51568557 -AGCTGTCATTATTATGGTTTGCTCGATTTAATATCAC
1 GA-CTGTCATTTTTACGGTTCGCTTGATTTAATATTGC
* **
51568594 GACCT-TCGATATTCTAACAATTCGCTTGATTTAATATTGCC
1 GA-CTGTC-AT-TT-TTACGGTTCGCTTGATTTAATATTG-C
* *
51568635 G-CTGTCATTTTTACGGTTCGCTTGATTTAAGATCGC
1 GACTGTCATTTTTACGGTTCGCTTGATTTAATATTGC
* * * * *
51568671 GACCTTTGATATTCTAACTGTTCACTTGATTTAATATTGC
1 GA-CTGTCAT-TT-TTACGGTTCGCTTGATTTAATATTGC
* * * * *
51568711 GACTGTCATTTTTACGTTTCGCTCGATATAAGATCGC
1 GACTGTCATTTTTACGGTTCGCTTGATTTAATATTGC
* * * * *
51568748 GACAT-CCAATATTCTAACAGTTCGCTCGATTTAATATCGC
1 GAC-TGTC-AT-TT-TTACGGTTCGCTTGATTTAATATTGC
* * * *
51568788 GAGTGTCATTTTCACGGTTTGCTCGATTTAA
1 GACTGTCATTTTTACGGTTCGCTTGATTTAA
51568819 GATCATGACC
Statistics
Matches: 228, Mismatches: 53, Indels: 41
0.71 0.16 0.13
Matches are distributed among these distances:
36 6 0.03
37 88 0.39
38 23 0.10
39 28 0.12
40 81 0.36
41 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (37 bp):
GACTGTCATTTTTACGGTTCGCTTGATTTAATATTGC
Found at i:51569956 original size:17 final size:17
Alignment explanation
Indices: 51569922--51569975 Score: 58
Period size: 16 Copynumber: 3.2 Consensus size: 17
51569912 ATGCGTGTAT
* *
51569922 ATATGTATAAATTATAAA
1 ATATG-ATAAAATATTAA
51569940 ATATGA-AAAATATTAA
1 ATATGATAAAATATTAA
*
51569956 ATATTATAAAATA-TAA
1 ATATGATAAAATATTAA
51569972 ATAT
1 ATAT
51569976 ATATATGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 20 0.62
17 7 0.22
18 5 0.16
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (17 bp):
ATATGATAAAATATTAA
Done.