Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 165 of 240
Found at i:51570013 original size:10 final size:10
Alignment explanation
Indices: 51570000--51570030 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
51569990 AAGCTATGAA
51570000 AATAAAATAT
1 AATAAAATAT
51570010 AATAAAATAT
1 AATAAAATAT
*
51570020 AATAATATAT
1 AATAAAATAT
51570030 A
1 A
51570031 TATGAATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (10 bp):
AATAAAATAT
Found at i:51570038 original size:20 final size:18
Alignment explanation
Indices: 51569994--51570043 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
51569984 ATATAAAAGC
*
51569994 TATGAAAATAAAATATAA
1 TATGAATATAAAATATAA
*
51570012 TA-AAATATAATAATATATA
1 TATGAATATAA-AATATA-A
51570031 TATGAATATAAAA
1 TATGAATATAAAA
51570044 ACATTTAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
17 6 0.23
18 8 0.31
19 5 0.19
20 7 0.27
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (18 bp):
TATGAATATAAAATATAA
Found at i:51571313 original size:40 final size:40
Alignment explanation
Indices: 51571219--51571325 Score: 141
Period size: 37 Copynumber: 2.8 Consensus size: 40
51571209 TGCGACATTT
* *
51571219 GATATTTTAACAGTTTGCTTGATTTAATATCGCGACTATC
1 GATATTTTAATAGTTTGCTTGATTTAATATCACGACTATC
* *
51571259 -AT-TTTT-ATGGTTTGCTCGATTTAATATCACGACCT-TC
1 GATATTTTAATAGTTTGCTTGATTTAATATCACGA-CTATC
51571296 GATATTTTAATAGTTTGCTTGATTTAATAT
1 GATATTTTAATAGTTTGCTTGATTTAATAT
51571326 TGCGGTTATC
Statistics
Matches: 57, Mismatches: 6, Indels: 8
0.80 0.08 0.11
Matches are distributed among these distances:
37 24 0.42
38 8 0.14
39 6 0.11
40 19 0.33
ACGTcount: A:0.26, C:0.13, G:0.14, T:0.47
Consensus pattern (40 bp):
GATATTTTAATAGTTTGCTTGATTTAATATCACGACTATC
Found at i:51571357 original size:77 final size:77
Alignment explanation
Indices: 51571219--51571598 Score: 372
Period size: 77 Copynumber: 4.9 Consensus size: 77
51571209 TGCGACATTT
* * * * ** * *
51571219 GATATTTTAACAGTTTGCTTGATTTAATATCGCGACTATCATTTTTATGGTTTGCTCGATTTAAT
1 GATATTTTAATAGTTCGCTTGATTTAATATCGCGGCTATCATTTTTACGGTTCACTTGATTTAAG
51571284 ATCACGACCTTC
66 ATCACGACCTTC
* * *
51571296 GATATTTTAATAGTTTGCTTGATTTAATATTGCGGTTATCATTTTTACGGTTCACTTGATTTAAG
1 GATATTTTAATAGTTCGCTTGATTTAATATCGCGGCTATCATTTTTACGGTTCACTTGATTTAAG
** * *
51571361 ATTGCAACTTTC
66 ATCACGACCTTC
* * * * * * * *
51571373 GATATTCTAACAGTTCACTTGATTTAATATTGTGGTTTTCATTTTTACGGTTCGCTTGATTTAAG
1 GATATTTTAATAGTTCGCTTGATTTAATATCGCGGCTATCATTTTTACGGTTCACTTGATTTAAG
* *
51571438 ATCCCGACTTTC
66 ATCACGACCTTC
* * *
51571450 GATATTCTAATAGTTCGCTCGATTTAATATCGCGGCTGTCATTTTTACGGTTCACTTGATTTAAG
1 GATATTTTAATAGTTCGCTTGATTTAATATCGCGGCTATCATTTTTACGGTTCACTTGATTTAAG
* * *
51571515 ATCGCAACCATC
66 ATCACGACCTTC
* * * * *
51571527 -AGT-TTTCTAATAGTTCACTTGATTTAATATCGTGACTGTCATTTTTACAG-TC-CGTTGATTT
1 GA-TATTT-TAATAGTTCGCTTGATTTAATATCGCGGCTATCATTTTTACGGTTCAC-TTGATTT
*
51571588 AATATCACGAC
63 AAGATCACGAC
51571599 TTTCAGTTTT
Statistics
Matches: 256, Mismatches: 44, Indels: 7
0.83 0.14 0.02
Matches are distributed among these distances:
75 1 0.00
76 20 0.08
77 235 0.92
ACGTcount: A:0.24, C:0.17, G:0.15, T:0.44
Consensus pattern (77 bp):
GATATTTTAATAGTTCGCTTGATTTAATATCGCGGCTATCATTTTTACGGTTCACTTGATTTAAG
ATCACGACCTTC
Found at i:51571396 original size:40 final size:38
Alignment explanation
Indices: 51571345--51571621 Score: 168
Period size: 40 Copynumber: 7.2 Consensus size: 38
51571335 CATTTTTACG
* *
51571345 GTTCACTTGATTTAAGATTGCAACTTTCGATATTCTAACA
1 GTTCACTTGATTTAAGATCGCGACTTTC-AT-TTCTAACA
* * * ** * *
51571385 GTTCACTTGATTTAATATTGTGGTTTTCATTT-TTACG
1 GTTCACTTGATTTAAGATCGCGACTTTCATTTCTAACA
* * *
51571422 GTTCGCTTGATTTAAGATCCCGACTTTCGATATTCTAATA
1 GTTCACTTGATTTAAGATCGCGACTTTC-AT-TTCTAACA
* * * * * * *
51571462 GTTCGCTCGATTTAATATCGCGGCTGTCATTT-TTACG
1 GTTCACTTGATTTAAGATCGCGACTTTCATTTCTAACA
* ** *
51571499 GTTCACTTGATTTAAGATCGCAACCATCAGTTTTCTAATA
1 GTTCACTTGATTTAAGATCGCGACTTTCA--TTTCTAACA
* * * *
51571539 GTTCACTTGATTTAATATCGTGACTGTCATTT-TTACA
1 GTTCACTTGATTTAAGATCGCGACTTTCATTTCTAACA
* * *
51571576 G-TC-CGTTGATTTAATATCACGACTTTCAGTTTTCTAATA
1 GTTCAC-TTGATTTAAGATCGCGACTTTCA--TTTCTAACA
51571615 GTTCACT
1 GTTCACT
51571622 AATTCACAAT
Statistics
Matches: 178, Mismatches: 47, Indels: 24
0.71 0.19 0.10
Matches are distributed among these distances:
35 1 0.01
36 22 0.12
37 52 0.29
38 12 0.07
39 13 0.07
40 77 0.43
41 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.15, T:0.43
Consensus pattern (38 bp):
GTTCACTTGATTTAAGATCGCGACTTTCATTTCTAACA
Found at i:51571492 original size:154 final size:154
Alignment explanation
Indices: 51571219--51571618 Score: 500
Period size: 154 Copynumber: 2.6 Consensus size: 154
51571209 TGCGACATTT
* ** * * * *
51571219 GATATTTTAACAGTTTGCTTGATTTAATATCGCGACTATCATTTTTATGGTTTGCTCGATTTAAT
1 GATATTCTAACAGTTCACTTGATTTAATATCGTGACTATCATTTTTACGGTTCGCTTGATTTAAT
* * * * * *
51571284 ATCACGACCTTCGATATTTTAATAGTTTGCTTGATTTAATATTGCGGTTATCATTTTTACGGTTC
66 ATCACGACTTTCGATATTCTAATAGTTCGCTCGATTTAATATCGCGGCTATCATTTTTACGGTTC
* **
51571349 ACTTGATTTAAGATTGCAACTTTC
131 ACTTGATTTAAGATCGCAACCATC
* ** * *
51571373 GATATTCTAACAGTTCACTTGATTTAATATTGTGGTTTTCATTTTTACGGTTCGCTTGATTTAAG
1 GATATTCTAACAGTTCACTTGATTTAATATCGTGACTATCATTTTTACGGTTCGCTTGATTTAAT
* *
51571438 ATCCCGACTTTCGATATTCTAATAGTTCGCTCGATTTAATATCGCGGCTGTCATTTTTACGGTTC
66 ATCACGACTTTCGATATTCTAATAGTTCGCTCGATTTAATATCGCGGCTATCATTTTTACGGTTC
51571503 ACTTGATTTAAGATCGCAACCATC
131 ACTTGATTTAAGATCGCAACCATC
* * * * *
51571527 -AGTTTTCTAATAGTTCACTTGATTTAATATCGTGACTGTCATTTTTACAGTCCG-TTGATTTAA
1 GA-TATTCTAACAGTTCACTTGATTTAATATCGTGACTATCATTTTTACGGTTCGCTTGATTTAA
*
51571590 TATCACGACTTTC-AGTTTTCTAATAGTTC
65 TATCACGACTTTCGA-TATTCTAATAGTTC
51571619 ACTAATTCAC
Statistics
Matches: 210, Mismatches: 34, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
152 1 0.00
153 34 0.16
154 175 0.83
ACGTcount: A:0.24, C:0.17, G:0.15, T:0.44
Consensus pattern (154 bp):
GATATTCTAACAGTTCACTTGATTTAATATCGTGACTATCATTTTTACGGTTCGCTTGATTTAAT
ATCACGACTTTCGATATTCTAATAGTTCGCTCGATTTAATATCGCGGCTATCATTTTTACGGTTC
ACTTGATTTAAGATCGCAACCATC
Found at i:51575028 original size:12 final size:12
Alignment explanation
Indices: 51575011--51575037 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
51575001 CAAACCATAC
51575011 ATTTCATTGTTT
1 ATTTCATTGTTT
51575023 ATTTCATTGTTT
1 ATTTCATTGTTT
51575035 ATT
1 ATT
51575038 GTATGTTAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.07, G:0.07, T:0.67
Consensus pattern (12 bp):
ATTTCATTGTTT
Found at i:51575487 original size:18 final size:18
Alignment explanation
Indices: 51575464--51575499 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
51575454 GAGGGTGTTT
51575464 TTGTCTTTTAATATGATA
1 TTGTCTTTTAATATGATA
51575482 TTGTCTTTTAATATGATA
1 TTGTCTTTTAATATGATA
51575500 GATCAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.11, T:0.56
Consensus pattern (18 bp):
TTGTCTTTTAATATGATA
Found at i:51576346 original size:16 final size:17
Alignment explanation
Indices: 51576325--51576358 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
51576315 ACAAAATTAT
*
51576325 TAGTAA-AAGGTTAATA
1 TAGTAATAAGGTAAATA
51576341 TAGTAATAAGGTAAATA
1 TAGTAATAAGGTAAATA
51576358 T
1 T
51576359 GAACTTTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.50, C:0.00, G:0.18, T:0.32
Consensus pattern (17 bp):
TAGTAATAAGGTAAATA
Found at i:51576816 original size:42 final size:42
Alignment explanation
Indices: 51576763--51576858 Score: 165
Period size: 42 Copynumber: 2.3 Consensus size: 42
51576753 ATGAACGGCG
*
51576763 CTAAGTGTGCGAAATTAAAATAATGATGTTGGATAATGGGCA
1 CTAAGTGTGCGAAATTAAAATAATGATGTTGGATAACGGGCA
* *
51576805 CTAAGTGTGCGAAATTAAAATGATGATGTTGTATAACGGGCA
1 CTAAGTGTGCGAAATTAAAATAATGATGTTGGATAACGGGCA
51576847 CTAAGTGTGCGA
1 CTAAGTGTGCGA
51576859 TACCGAGAGC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.28
Consensus pattern (42 bp):
CTAAGTGTGCGAAATTAAAATAATGATGTTGGATAACGGGCA
Found at i:51585151 original size:17 final size:18
Alignment explanation
Indices: 51585125--51585159 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
51585115 ATAAAAATGG
51585125 TAATAAACAGA-AACAAT
1 TAATAAACAGATAACAAT
*
51585142 TAATAGACAGATAACAAT
1 TAATAAACAGATAACAAT
51585160 CAAAGTTTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.60, C:0.11, G:0.09, T:0.20
Consensus pattern (18 bp):
TAATAAACAGATAACAAT
Found at i:51591427 original size:60 final size:60
Alignment explanation
Indices: 51591332--51591471 Score: 244
Period size: 60 Copynumber: 2.3 Consensus size: 60
51591322 TTACAGTGGG
* *
51591332 ATTACCAGTCTAGGCTAAATCCCCTGCAACGACAATTTACTCTAATGAGCTTGGATCTGA
1 ATTACCAGTCCAGGCTAAATCCCCTGCAACAACAATTTACTCTAATGAGCTTGGATCTGA
*
51591392 ATTACCAGTCCAGGCTAAATCCCTTGCAACAACAATTTACTCTAATGAGCTTGGATCTGA
1 ATTACCAGTCCAGGCTAAATCCCCTGCAACAACAATTTACTCTAATGAGCTTGGATCTGA
*
51591452 ATTACCAGTCCAAGCTAAAT
1 ATTACCAGTCCAGGCTAAAT
51591472 TCAGACCCTA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 76 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (60 bp):
ATTACCAGTCCAGGCTAAATCCCCTGCAACAACAATTTACTCTAATGAGCTTGGATCTGA
Found at i:51593842 original size:16 final size:16
Alignment explanation
Indices: 51593821--51593869 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
51593811 TTTGAAAAAC
*
51593821 AAAAAAATTAAGTGCT
1 AAAAAAATTAAGTGAT
*
51593837 -AAAAAATTAAAT-AT
1 AAAAAAATTAAGTGAT
51593851 AAAAAAATTTAAGTGAT
1 AAAAAAA-TTAAGTGAT
51593868 AA
1 AA
51593870 TTCAAGTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
14 1 0.04
15 17 0.63
16 5 0.19
17 4 0.15
ACGTcount: A:0.63, C:0.02, G:0.08, T:0.27
Consensus pattern (16 bp):
AAAAAAATTAAGTGAT
Found at i:51594597 original size:25 final size:25
Alignment explanation
Indices: 51594550--51594597 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
51594540 ATTTATGTAT
* *
51594550 AAATATATTTATATGAATGTAAATG
1 AAATATATTTACATGAATATAAATG
*
51594575 AAATATATTTACATGTATATAAA
1 AAATATATTTACATGAATATAAA
51594598 ATGTATAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.50, C:0.02, G:0.08, T:0.40
Consensus pattern (25 bp):
AAATATATTTACATGAATATAAATG
Found at i:51594707 original size:65 final size:67
Alignment explanation
Indices: 51594626--51594757 Score: 160
Period size: 65 Copynumber: 2.0 Consensus size: 67
51594616 GACAAAAAAC
* * * * * *
51594626 ATATAATTTCTGAAGAAACTAAAACTTAGGCTATA-A-ATATATATGTGAAAAATATTTAAATGT
1 ATATAATTTATCAAGAAACTAAAAATTAGACTATATATATATATATGCGAAAAATATTTAAAAGT
51594689 AT
66 AT
* * * *
51594691 ATATAATTTATCAAGAAATTAAAAATTAGATTATATATATGTATATGCGAACAATATTTAAAAGT
1 ATATAATTTATCAAGAAACTAAAAATTAGACTATATATATATATATGCGAAAAATATTTAAAAGT
51594756 AT
66 AT
51594758 CAATAAACCC
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
65 29 0.53
66 1 0.02
67 25 0.45
ACGTcount: A:0.48, C:0.05, G:0.10, T:0.36
Consensus pattern (67 bp):
ATATAATTTATCAAGAAACTAAAAATTAGACTATATATATATATATGCGAAAAATATTTAAAAGT
AT
Found at i:51596310 original size:104 final size:104
Alignment explanation
Indices: 51596188--51596411 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
51596178 AATGGATATC
51596188 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
51596253 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
51596292 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
51596357 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
51596396 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
51596412 TTTATATACA
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:51596773 original size:29 final size:29
Alignment explanation
Indices: 51596740--51596803 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
51596730 TAATCTACCA
51596740 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
51596769 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
51596799 CCCAA
1 CCCAA
51596804 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:51596777 original size:30 final size:30
Alignment explanation
Indices: 51596747--51596803 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
51596737 CCACCCAACT
51596747 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
51596776 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
51596804 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:51603748 original size:70 final size:72
Alignment explanation
Indices: 51603634--51603784 Score: 243
Period size: 71 Copynumber: 2.1 Consensus size: 72
51603624 GGGGAATCAT
* *
51603634 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTT-TCATTTCAAATATACAATG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATG
51603698 GATATCG
66 GATATCG
***
51603705 CACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATG
51603769 GATATCG
66 GATATCG
51603776 CACTTAGCA
1 CACTTAGCA
51603785 CCACCAATGA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 28 0.38
71 46 0.62
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (72 bp):
CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATG
GATATCG
Found at i:51603815 original size:103 final size:103
Alignment explanation
Indices: 51603704--51603925 Score: 367
Period size: 104 Copynumber: 2.2 Consensus size: 103
51603694 AATGGATATC
51603704 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
51603768 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACC-ATAAACCGGGGAATCA
51603807 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
*
51603872 GGATCACGCACATAGCACCACCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCATAAACCGGGGAATCA
**
51603910 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
51603926 TTATATACAA
Statistics
Matches: 112, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
103 45 0.40
104 66 0.59
105 1 0.01
ACGTcount: A:0.32, C:0.32, G:0.19, T:0.18
Consensus pattern (103 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCATAAACCGGGGAATCA
Found at i:51604285 original size:29 final size:29
Alignment explanation
Indices: 51604252--51604315 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
51604242 TAATCCACCA
51604252 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
51604281 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
51604311 CCCAA
1 CCCAA
51604316 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:51604289 original size:30 final size:30
Alignment explanation
Indices: 51604259--51604315 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
51604249 CCACCCAACT
51604259 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
51604288 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
51604316 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:51605764 original size:14 final size:14
Alignment explanation
Indices: 51605745--51605792 Score: 51
Period size: 14 Copynumber: 3.2 Consensus size: 14
51605735 TTAAGATAGT
51605745 CAAATATATGAAAG
1 CAAATATATGAAAG
* *
51605759 CAAATAATTAAGATAG
1 CAAAT-A-TATGAAAG
51605775 TCAAATATATGAAAG
1 -CAAATATATGAAAG
51605790 CAA
1 CAA
51605793 TCAACTGCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
14 8 0.30
15 7 0.26
16 7 0.26
17 5 0.19
ACGTcount: A:0.56, C:0.08, G:0.12, T:0.23
Consensus pattern (14 bp):
CAAATATATGAAAG
Found at i:51605767 original size:31 final size:31
Alignment explanation
Indices: 51605729--51605792 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
51605719 TCTGGTGTAT
51605729 AAATAATTAAGATAGTCAAATATATGAAAGC
1 AAATAATTAAGATAGTCAAATATATGAAAGC
51605760 AAATAATTAAGATAGTCAAATATATGAAAGC
1 AAATAATTAAGATAGTCAAATATATGAAAGC
51605791 AA
1 AA
51605793 TCAACTGCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.56, C:0.06, G:0.12, T:0.25
Consensus pattern (31 bp):
AAATAATTAAGATAGTCAAATATATGAAAGC
Found at i:51605781 original size:17 final size:17
Alignment explanation
Indices: 51605729--51605781 Score: 67
Period size: 17 Copynumber: 3.3 Consensus size: 17
51605719 TCTGGTGTAT
51605729 AAATAATTAAGATAGTC
1 AAATAATTAAGATAGTC
* *
51605746 AAAT-A-TATGAAAG-C
1 AAATAATTAAGATAGTC
51605760 AAATAATTAAGATAGTC
1 AAATAATTAAGATAGTC
51605777 AAATA
1 AAATA
51605782 TATGAAAGCA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
14 5 0.17
15 7 0.24
16 7 0.24
17 10 0.34
ACGTcount: A:0.57, C:0.06, G:0.11, T:0.26
Consensus pattern (17 bp):
AAATAATTAAGATAGTC
Found at i:51608865 original size:39 final size:39
Alignment explanation
Indices: 51608788--51608866 Score: 99
Period size: 40 Copynumber: 2.0 Consensus size: 39
51608778 TATTTTTAGA
* *
51608788 TTTATTTTTTAATTTTAAAATACTTTTAAAATATTTTAT
1 TTTATTTTTTAATTTTAAAATAATTTTAAAATAGTTTAT
*
51608827 TTTATTTTTTTATTTTTAAAATAAATTTT-AAAT-GTTTAT
1 TTTA-TTTTTTAATTTTAAAAT-AATTTTAAAATAGTTTAT
51608866 T
1 T
51608867 AAAAAATGGG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
39 10 0.29
40 20 0.57
41 5 0.14
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (39 bp):
TTTATTTTTTAATTTTAAAATAATTTTAAAATAGTTTAT
Found at i:51609185 original size:9 final size:9
Alignment explanation
Indices: 51609167--51609224 Score: 80
Period size: 9 Copynumber: 6.4 Consensus size: 9
51609157 TTTGGTTAAA
51609167 AATTAACCG
1 AATTAACCG
*
51609176 AATTACCCG
1 AATTAACCG
*
51609185 AATTAACTG
1 AATTAACCG
*
51609194 AATTACCCG
1 AATTAACCG
51609203 AATTAACCG
1 AATTAACCG
*
51609212 AATTAACCA
1 AATTAACCG
51609221 AATT
1 AATT
51609225 GAATCACTAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 42 1.00
ACGTcount: A:0.43, C:0.22, G:0.09, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:51609190 original size:18 final size:18
Alignment explanation
Indices: 51609167--51609216 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
51609157 TTTGGTTAAA
51609167 AATTAACCGAATTACCCG
1 AATTAACCGAATTACCCG
*
51609185 AATTAACTGAATTACCCG
1 AATTAACCGAATTACCCG
51609203 AATTAACCGAATTA
1 AATTAACCGAATTA
51609217 ACCAAATTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.42, C:0.22, G:0.10, T:0.26
Consensus pattern (18 bp):
AATTAACCGAATTACCCG
Found at i:51617580 original size:24 final size:24
Alignment explanation
Indices: 51617531--51617580 Score: 57
Period size: 25 Copynumber: 2.1 Consensus size: 24
51617521 AACTAAAAAA
* *
51617531 CGGTAGCTCATACGAGCTGAGTAT
1 CGGTAGCTCATAAGAGCTGAGAAT
*
51617555 CGGTAAGCTCATAAGAGTTG-GAAT
1 CGGT-AGCTCATAAGAGCTGAGAAT
51617579 CG
1 CG
51617581 ATAACCCTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 9 0.41
25 13 0.59
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (24 bp):
CGGTAGCTCATAAGAGCTGAGAAT
Found at i:51620722 original size:75 final size:75
Alignment explanation
Indices: 51620626--51620771 Score: 222
Period size: 75 Copynumber: 1.9 Consensus size: 75
51620616 ACAAAGAACC
*
51620626 CCTAAAATTAATAACTAAAAT-GACAAAAAAGTCATTACATAAATACAAACTTAACTATTTAAAT
1 CCTAAAATTAATAACTAAAATGGA-AAAAAAGTCATTACATAAATACAAACTTAACTATTCAAAT
51620690 TGAAAAAAACT
65 TGAAAAAAACT
* * * *
51620701 CCTAAAATTAATAATTGAAATGGAAAAAAAGTCATTACATAAATACAAACTTGATTATTCAAATT
1 CCTAAAATTAATAACTAAAATGGAAAAAAAGTCATTACATAAATACAAACTTAACTATTCAAATT
*
51620766 GCAAAA
66 GAAAAA
51620772 CCCCCTAAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
75 62 0.97
76 2 0.03
ACGTcount: A:0.54, C:0.12, G:0.06, T:0.27
Consensus pattern (75 bp):
CCTAAAATTAATAACTAAAATGGAAAAAAAGTCATTACATAAATACAAACTTAACTATTCAAATT
GAAAAAAACT
Found at i:51621044 original size:33 final size:33
Alignment explanation
Indices: 51620946--51621063 Score: 130
Period size: 33 Copynumber: 3.6 Consensus size: 33
51620936 CTTGAGCTGG
* ** ** *
51620946 GGAGTGAAGTACTGCGGTGGATACAAGCCGAGA
1 GGAGTGGAGTACTAAGGTGGATACGGGCCGGGA
* * *
51620979 GGAGTGG-GTACTAAAGTGGATATGGGCTGGGA
1 GGAGTGGAGTACTAAGGTGGATACGGGCCGGGA
* *
51621011 GGAGTGGAGTATTGAGGTGGATACGGGCCGGGA
1 GGAGTGGAGTACTAAGGTGGATACGGGCCGGGA
51621044 GGAGTGGAGTACTAAGGTGG
1 GGAGTGGAGTACTAAGGTGG
51621064 TAGTGGGCTG
Statistics
Matches: 68, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
32 24 0.35
33 44 0.65
ACGTcount: A:0.25, C:0.09, G:0.47, T:0.19
Consensus pattern (33 bp):
GGAGTGGAGTACTAAGGTGGATACGGGCCGGGA
Found at i:51621050 original size:65 final size:66
Alignment explanation
Indices: 51620946--51621073 Score: 170
Period size: 65 Copynumber: 2.0 Consensus size: 66
51620936 CTTGAGCTGG
*
51620946 GGAGTGAAGTACTGCGGTGGATACAAGCCGAGAGGAGTGG-GTACTAAAGTGGATA-TGGGCTGG
1 GGAGTGAAGTACTGAGGTGGATACAAGCCGAGAGGAGTGGAGTACTAAAGTGG-TAGTGGGCTGG
51621009 GA
65 GA
* * ** * *
51621011 GGAGTGGAGTATTGAGGTGGATACGGGCCGGGAGGAGTGGAGTACTAAGGTGGTAGTGGGCTG
1 GGAGTGAAGTACTGAGGTGGATACAAGCCGAGAGGAGTGGAGTACTAAAGTGGTAGTGGGCTG
51621074 AAGATATCAA
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
65 36 0.67
66 18 0.33
ACGTcount: A:0.24, C:0.09, G:0.47, T:0.20
Consensus pattern (66 bp):
GGAGTGAAGTACTGAGGTGGATACAAGCCGAGAGGAGTGGAGTACTAAAGTGGTAGTGGGCTGGG
A
Found at i:51623125 original size:102 final size:103
Alignment explanation
Indices: 51623019--51623242 Score: 267
Period size: 103 Copynumber: 2.2 Consensus size: 103
51623009 AATATTTTAG
*
51623019 TAAATCAATAA-AAAATGTCAAATA-AACAAAAATCAAATAAA-TTTACATTACT-AAAAAATCA
1 TAAATCAATAACAAAA--T-AAATATAACAAAAATCAAAAAAATTTTACATTACTAAAAAAATCA
51623080 CAAAACACTAAACTAAACACTAACAATTTATAACCTAATCA
63 CAAAACACTAAACTAAACACTAACAATTTATAACCTAATCA
* * * ****** *
51623121 TAAATTACTAACAAAATAACTATAATTTTTTTTAAAAAAATTTTACATTACTAAAAAAATCACAA
1 TAAATCAATAACAAAATAAATATAACAAAAATCAAAAAAATTTTACATTACTAAAAAAATCACAA
*
51623186 AACACTAAACTTAACACTAACAATTTATAACCTAATCA
66 AACACTAAACTAAACACTAACAATTTATAACCTAATCA
* *
51623224 TAAATTACTAACAAAATAA
1 TAAATCAATAACAAAATAA
51623243 TTTTACATTA
Statistics
Matches: 106, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
100 4 0.04
101 10 0.09
102 20 0.19
103 72 0.68
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (103 bp):
TAAATCAATAACAAAATAAATATAACAAAAATCAAAAAAATTTTACATTACTAAAAAAATCACAA
AACACTAAACTAAACACTAACAATTTATAACCTAATCA
Found at i:51623308 original size:80 final size:82
Alignment explanation
Indices: 51623154--51623327 Score: 253
Period size: 80 Copynumber: 2.1 Consensus size: 82
51623144 AATTTTTTTT
* * ** * *
51623154 AAAAAAATTTTACATTACTAAAAAAATCACAAAACACTAAACTTAACACTAACAATTTATAACCT
1 AAAATAATTTTACATTAATAAAAAAATCACAAAACAAAAAACTAAACACTAACAATTTATAACAT
51623219 AATCATAAATTACTAAC
66 AATCATAAATTACTAAC
51623236 AAAATAATTTTACATTAAT-AAAAAATCACAAAACAAAAAACTAAACAC-AACAATTTATAACAT
1 AAAATAATTTTACATTAATAAAAAAATCACAAAACAAAAAACTAAACACTAACAATTTATAACAT
* *
51623299 AATCCTAAATTACTTAC
66 AATCATAAATTACTAAC
*
51623316 AAAATGATTTTA
1 AAAATAATTTTA
51623328 AAATAATTAT
Statistics
Matches: 83, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 40 0.48
81 26 0.31
82 17 0.20
ACGTcount: A:0.56, C:0.16, G:0.01, T:0.28
Consensus pattern (82 bp):
AAAATAATTTTACATTAATAAAAAAATCACAAAACAAAAAACTAAACACTAACAATTTATAACAT
AATCATAAATTACTAAC
Found at i:51623404 original size:183 final size:183
Alignment explanation
Indices: 51623053--51623404 Score: 453
Period size: 183 Copynumber: 1.9 Consensus size: 183
51623043 AACAAAAATC
* ** *
51623053 AAATAAATTTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATAACCTAA
1 AAATAAATTTACATTAATAAAAAATCACAAAACAAAAAACTAAACACTAACAATTTATAACATAA
* ** *
51623118 TCATAAATTACTAACAAAATAACTATAATTTTTTTTAAAAAAATTTTACATTACTAAAAAAATCA
66 TCATAAATTACTAACAAAATAACTATAAATAATTATAAAAAAA-TTTACATTACTAAAAAAATCA
* *
51623183 CAAAACACTAAACTTAACACTAACAATTTATAACCTAATCATAAATTACTAACA
130 CAAAACACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACA
*
51623237 AAATAATTTTACATTAATAAAAAATCACAAAACAAAAAACTAAACAC-AACAATTTATAACATAA
1 AAATAAATTTACATTAATAAAAAATCACAAAACAAAAAACTAAACACTAACAATTTATAACATAA
* * * * *
51623301 TCCTAAATTACTTACAAAATGATTTTAAAATAATTATAAAAAAA-TTACATT-CATAAAAAAA-C
66 TCATAAATTACTAACAAAATAACTAT-AAATAATTATAAAAAAATTTACATTAC-TAAAAAAATC
**
51623363 ATTAAAC-CATAAACACTAAACACAAACAATTTATAACCTAAT
129 ACAAAACAC-T-AA-ACTAAACACAAACAATTTATAACCTAAT
51623405 AATTAAAAAC
Statistics
Matches: 145, Mismatches: 18, Indels: 11
0.83 0.10 0.06
Matches are distributed among these distances:
180 1 0.01
181 8 0.06
182 17 0.12
183 63 0.43
184 56 0.39
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (183 bp):
AAATAAATTTACATTAATAAAAAATCACAAAACAAAAAACTAAACACTAACAATTTATAACATAA
TCATAAATTACTAACAAAATAACTATAAATAATTATAAAAAAATTTACATTACTAAAAAAATCAC
AAAACACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACA
Found at i:51623537 original size:27 final size:28
Alignment explanation
Indices: 51623489--51623555 Score: 70
Period size: 27 Copynumber: 2.5 Consensus size: 28
51623479 CATACATTTT
* * *
51623489 TTCTTTCTTTCTT-TCTTCTTC-TTCTTC
1 TTCTTTTTTTCTTCTCCTCTTCTTTC-AC
51623516 TTCTTTTTTTCTTCTCCT-TTCTTTCAC
1 TTCTTTTTTTCTTCTCCTCTTCTTTCAC
51623543 TT-TTTTTTTCTTC
1 TTCTTTTTTTCTTC
51623556 ACTCCCGCTC
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
26 11 0.31
27 18 0.51
28 6 0.17
ACGTcount: A:0.01, C:0.27, G:0.00, T:0.72
Consensus pattern (28 bp):
TTCTTTTTTTCTTCTCCTCTTCTTTCAC
Found at i:51623863 original size:25 final size:25
Alignment explanation
Indices: 51623829--51623884 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
51623819 GACCCGATAT
* * *
51623829 ATATATTTTTAAATAATAAAAAATA
1 ATATATTTTTAAAAAACAAAAAAAA
51623854 ATATATTTTTAAAAAACAAAAAAAA
1 ATATATTTTTAAAAAACAAAAAAAA
51623879 AT-TATT
1 ATATATT
51623885 AAAAAACAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 4 0.14
25 24 0.86
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (25 bp):
ATATATTTTTAAAAAACAAAAAAAA
Found at i:51624804 original size:9 final size:9
Alignment explanation
Indices: 51624790--51624830 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
51624780 GGACGAGGAC
51624790 GACAAGAAG
1 GACAAGAAG
51624799 GACAAGAAG
1 GACAAGAAG
*
51624808 GACAAAAAG
1 GACAAGAAG
*
51624817 GACAAGAAA
1 GACAAGAAG
51624826 GACAA
1 GACAA
51624831 AGATCACAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.61, C:0.12, G:0.27, T:0.00
Consensus pattern (9 bp):
GACAAGAAG
Found at i:51624839 original size:18 final size:18
Alignment explanation
Indices: 51624818--51624870 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
51624808 GACAAAAAGG
51624818 ACAAGAAAGACAAAGATC
1 ACAAGAAAGACAAAGATC
**
51624836 ACAAGAAAGGTAAAGATC
1 ACAAGAAAGACAAAGATC
*
51624854 ATAA-AGAAGACAAAGAT
1 ACAAGA-AAGACAAAGAT
51624871 GAAGGGATGA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
17 1 0.03
18 28 0.97
ACGTcount: A:0.60, C:0.11, G:0.19, T:0.09
Consensus pattern (18 bp):
ACAAGAAAGACAAAGATC
Found at i:51624977 original size:105 final size:105
Alignment explanation
Indices: 51624856--51625119 Score: 420
Period size: 105 Copynumber: 2.5 Consensus size: 105
51624846 TAAAGATCAT
* *
51624856 AAAGAAGACAAAGATGAAGGGATGATGGATAAAATCAAGGACATGATCACGGGTGATAAAGATGA
1 AAAGAACACAAGGATGAAGGGATGATGGATAAAATCAAGGACATGATCACGGGTGATAAAGATGA
* *
51624921 CGATAAGCATAAGAAAGATGACCATAAGCACAAGGACCGC
66 CGATAAGCACAAGAAAGATGACCATAAGCACAAGGAACGC
* *
51624961 AAAGAGCACAAGGATGAAGGGATGATGGATAAAATCAAGGACATGATCACTGGTGATAAAGATGA
1 AAAGAACACAAGGATGAAGGGATGATGGATAAAATCAAGGACATGATCACGGGTGATAAAGATGA
51625026 CGATAAGCACAAGAAAGATGACCATAAGCACAAGGAACGC
66 CGATAAGCACAAGAAAGATGACCATAAGCACAAGGAACGC
* * * * *
51625066 AAAGAACACAAGGATGAAGGGATGCTAGATAAGATCAAAGACAAGATCCACGGG
1 AAAGAACACAAGGATGAAGGGATGATGGATAAAATCAAGGACATGAT-CACGGG
51625120 GATGACGATC
Statistics
Matches: 145, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
105 140 0.97
106 5 0.03
ACGTcount: A:0.46, C:0.14, G:0.27, T:0.13
Consensus pattern (105 bp):
AAAGAACACAAGGATGAAGGGATGATGGATAAAATCAAGGACATGATCACGGGTGATAAAGATGA
CGATAAGCACAAGAAAGATGACCATAAGCACAAGGAACGC
Found at i:51625042 original size:21 final size:21
Alignment explanation
Indices: 51625018--51625059 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
51625008 CACTGGTGAT
*
51625018 AAAGATGACGATAAGCACAAG
1 AAAGATGACCATAAGCACAAG
51625039 AAAGATGACCATAAGCACAAG
1 AAAGATGACCATAAGCACAAG
51625060 GAACGCAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.52, C:0.17, G:0.21, T:0.10
Consensus pattern (21 bp):
AAAGATGACCATAAGCACAAG
Found at i:51625180 original size:18 final size:18
Alignment explanation
Indices: 51625145--51625180 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
51625135 CGCGACCATC
*
51625145 GTCGCGATAGTAGCCGTG
1 GTCGCGATAGCAGCCGTG
*
51625163 GTCGCGATAGCAGTCGTG
1 GTCGCGATAGCAGCCGTG
51625181 ATCGTGACCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.22, G:0.39, T:0.22
Consensus pattern (18 bp):
GTCGCGATAGCAGCCGTG
Found at i:51625320 original size:15 final size:16
Alignment explanation
Indices: 51625283--51625322 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
51625273 AGTGATGACG
51625283 AGAAG-AAGAAAAAGA
1 AGAAGAAAGAAAAAGA
*
51625298 AGAAGAAAGGAAAA-A
1 AGAAGAAAGAAAAAGA
51625313 AGAAGAAAGA
1 AGAAGAAAGA
51625323 CGATGGTAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 15 0.68
16 7 0.32
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (16 bp):
AGAAGAAAGAAAAAGA
Found at i:51630163 original size:6 final size:6
Alignment explanation
Indices: 51630152--51630207 Score: 112
Period size: 6 Copynumber: 9.3 Consensus size: 6
51630142 AATTATCAAG
51630152 TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA
1 TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA
51630200 TAGTAA TA
1 TAGTAA TA
51630208 TAAGGTTTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.16, T:0.34
Consensus pattern (6 bp):
TAGTAA
Found at i:51638439 original size:13 final size:13
Alignment explanation
Indices: 51638421--51638445 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51638411 AAAATTACAG
51638421 ATTTAACCCAGAA
1 ATTTAACCCAGAA
51638434 ATTTAACCCAGA
1 ATTTAACCCAGA
51638446 TTTCAGGGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.24, G:0.08, T:0.24
Consensus pattern (13 bp):
ATTTAACCCAGAA
Found at i:51639175 original size:21 final size:22
Alignment explanation
Indices: 51639149--51639217 Score: 77
Period size: 21 Copynumber: 3.0 Consensus size: 22
51639139 CTATATGAGT
51639149 GGTGTCGCTTCAAACAATAGAA
1 GGTGTCGCTTCAAACAATAGAA
*
51639171 -GTGTCGCTTCAAGCAACATAAGAAA
1 GGTGTCGCTTCAAAC-A-AT-AG-AA
51639196 TGGTGTCGCTTCAAACAATAGA
1 -GGTGTCGCTTCAAACAATAGA
51639218 TGTGGGGTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
21 13 0.33
22 1 0.03
23 3 0.08
24 4 0.10
25 4 0.10
26 1 0.03
27 13 0.33
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (22 bp):
GGTGTCGCTTCAAACAATAGAA
Found at i:51644809 original size:447 final size:447
Alignment explanation
Indices: 51643975--51644873 Score: 1753
Period size: 447 Copynumber: 2.0 Consensus size: 447
51643965 AGTTTCTCTT
* *
51643975 CATTGTATGTTGATGTTGAAATAAATTAAGGGGATGAGACAATATCATGGAGGTTTACAGGTTTT
1 CATTGTATGTTGATGTTGAAATAAATTAAGGGGATAAGACAATATCATGGAGGTTTACAGATTTT
*
51644040 ATGGATCATTAGTGGAACGACGAAGGGTAGAATCATGGAATTTGTTGCAACATTTGAGCAGAAAT
66 ATAGATCATTAGTGGAACGACGAAGGGTAGAATCATGGAATTTGTTGCAACATTTGAGCAGAAAT
*
51644105 AGTTCTTTATTGTGGTTAGTAATGGGAGATTTTAATGAATAATGTATTCGTTTGAGAAAAAGGGG
131 AGTTCTTTATTGTGGTTAGTAATGGGAGATTTTAATGAATAATGTATTCGTTTGAGAAAAAAGGG
51644170 GTGCCTCCGAGAAGAGCAATAACTGATGGCTTTTCGGGGAATTTTGGAGGAATGTGATCTAAGTT
196 GTGCCTCCGAGAAGAGCAATAACTGATGGCTTTTCGGGGAATTTTGGAGGAATGTGATCTAAGTT
51644235 ATTTGGAGTTCTCATGACAATGGTTTACATGGAAGAGTGGAAGGCTACCAGTAAATAATATATAA
261 ATTTGGAGTTCTCATGACAATGGTTTACATGGAAGAGTGGAAGGCTACCAGTAAATAATATATAA
51644300 GAATTTCTAAGTCGAGGGGTGGCCAACTCGAATTGGTGGGATCTATTCCCGGGCTATACAATTAA
326 GAATTTCTAAGTCGAGGGGTGGCCAACTCGAATTGGTGGGATCTATTCCCGGGCTATACAATTAA
51644365 ACACCTCCCGTATGGTTTTTTCGATCACTGTCCGGTACTTATTCATACAATTGAAGG
391 ACACCTCCCGTATGGTTTTTTCGATCACTGTCCGGTACTTATTCATACAATTGAAGG
51644422 CATTGTATGTTGATGTTGAAATAAATTAAGGGGATAAGACAATATCATGGAGGTTTACAGATTTT
1 CATTGTATGTTGATGTTGAAATAAATTAAGGGGATAAGACAATATCATGGAGGTTTACAGATTTT
51644487 ATAGATCATTAGTGGAACGACGAAGGGTAGAATCATGGAATTTGTTGCAACATTTGAGCAGAAAT
66 ATAGATCATTAGTGGAACGACGAAGGGTAGAATCATGGAATTTGTTGCAACATTTGAGCAGAAAT
51644552 AGTTCTTTATTGTGGTTAGTAATGGGAGATTTTAATGAATAATGTATTCGTTTGAGAAAAAAGGG
131 AGTTCTTTATTGTGGTTAGTAATGGGAGATTTTAATGAATAATGTATTCGTTTGAGAAAAAAGGG
51644617 GTGCCTCCGAGAAGAGCAATAACTGATGGCTTTTCGGGGAATTTTGGAGGAATGTGATCTAAGTT
196 GTGCCTCCGAGAAGAGCAATAACTGATGGCTTTTCGGGGAATTTTGGAGGAATGTGATCTAAGTT
51644682 ATTTGGAGTTCTCATGACAATGGTTTACATGGAAGAGTGGAAGGCTACCAGTAAATAATATATAA
261 ATTTGGAGTTCTCATGACAATGGTTTACATGGAAGAGTGGAAGGCTACCAGTAAATAATATATAA
51644747 GAATTTCTAAGTCGAGGGGTGGCCAACTCGAATTGGTGGGATCTATTCCCGGGCTATACAATTAA
326 GAATTTCTAAGTCGAGGGGTGGCCAACTCGAATTGGTGGGATCTATTCCCGGGCTATACAATTAA
*
51644812 ACACCTCCCGTATGGTTTTTTCGATCACTGTCCGGTACTTATTCATGCAATTGAAGG
391 ACACCTCCCGTATGGTTTTTTCGATCACTGTCCGGTACTTATTCATACAATTGAAGG
51644869 CATTG
1 CATTG
51644874 GTAGTCGATT
Statistics
Matches: 447, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
447 447 1.00
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.32
Consensus pattern (447 bp):
CATTGTATGTTGATGTTGAAATAAATTAAGGGGATAAGACAATATCATGGAGGTTTACAGATTTT
ATAGATCATTAGTGGAACGACGAAGGGTAGAATCATGGAATTTGTTGCAACATTTGAGCAGAAAT
AGTTCTTTATTGTGGTTAGTAATGGGAGATTTTAATGAATAATGTATTCGTTTGAGAAAAAAGGG
GTGCCTCCGAGAAGAGCAATAACTGATGGCTTTTCGGGGAATTTTGGAGGAATGTGATCTAAGTT
ATTTGGAGTTCTCATGACAATGGTTTACATGGAAGAGTGGAAGGCTACCAGTAAATAATATATAA
GAATTTCTAAGTCGAGGGGTGGCCAACTCGAATTGGTGGGATCTATTCCCGGGCTATACAATTAA
ACACCTCCCGTATGGTTTTTTCGATCACTGTCCGGTACTTATTCATACAATTGAAGG
Found at i:51646566 original size:26 final size:26
Alignment explanation
Indices: 51646543--51646610 Score: 118
Period size: 26 Copynumber: 2.6 Consensus size: 26
51646533 ATGTCCCAAC
51646543 CCACAGCTCGTGTGAATAAGCCCATT
1 CCACAGCTCGTGTGAATAAGCCCATT
* *
51646569 CCACAGCTCGTGTGAGTAGGCCCATT
1 CCACAGCTCGTGTGAATAAGCCCATT
51646595 CCACAGCTCGTGTGAA
1 CCACAGCTCGTGTGAA
51646611 CATTATTGAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.22
Consensus pattern (26 bp):
CCACAGCTCGTGTGAATAAGCCCATT
Found at i:51653702 original size:29 final size:27
Alignment explanation
Indices: 51653662--51653715 Score: 72
Period size: 29 Copynumber: 1.9 Consensus size: 27
51653652 AAAAAGCATT
*
51653662 TTTTTTAAATTTATCGAAATGGGCCGG
1 TTTTTTAAATTTACCGAAATGGGCCGG
*
51653689 TTTTTTAATTATTTACCGGAATGGGCC
1 TTTTTTAA--ATTTACCGAAATGGGCC
51653716 ATTTTTCGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 8 0.35
29 15 0.65
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.43
Consensus pattern (27 bp):
TTTTTTAAATTTACCGAAATGGGCCGG
Found at i:51653721 original size:29 final size:27
Alignment explanation
Indices: 51653661--51653721 Score: 68
Period size: 29 Copynumber: 2.2 Consensus size: 27
51653651 AAAAAAGCAT
* *
51653661 TTTTTTTAAATTTATCGAAATGGGCCG
1 TTTTTTTAAATTTACCGAAATGGGCCA
* *
51653688 GTTTTTTAATTATTTACCGGAATGGGCCA
1 TTTTTTTAA--ATTTACCGAAATGGGCCA
51653717 TTTTT
1 TTTTT
51653722 CGCAAAATCG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
27 8 0.30
29 19 0.70
ACGTcount: A:0.23, C:0.11, G:0.18, T:0.48
Consensus pattern (27 bp):
TTTTTTTAAATTTACCGAAATGGGCCA
Found at i:51654628 original size:29 final size:26
Alignment explanation
Indices: 51654578--51654637 Score: 66
Period size: 29 Copynumber: 2.2 Consensus size: 26
51654568 CGATTTCGCG
*
51654578 AAAAATGGCCCATTCCGGTAAATAATTA
1 AAAAATGGCCCATTCCGATAAAT--TTA
* *
51654606 AAAAAGTGGCCTATTTCGATAAATTTA
1 AAAAA-TGGCCCATTCCGATAAATTTA
51654633 AAAAA
1 AAAAA
51654638 AAAGGTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 8 0.29
28 5 0.18
29 15 0.54
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.27
Consensus pattern (26 bp):
AAAAATGGCCCATTCCGATAAATTTA
Found at i:51660578 original size:103 final size:104
Alignment explanation
Indices: 51660334--51660599 Score: 426
Period size: 103 Copynumber: 2.6 Consensus size: 104
51660324 GTTGTACATA
** *
51660334 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
51660399 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* *
51660438 GAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
51660503 CTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
51660541 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
51660600 AATAACGGTT
Statistics
Matches: 149, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:51662918 original size:12 final size:12
Alignment explanation
Indices: 51662901--51662955 Score: 74
Period size: 12 Copynumber: 4.6 Consensus size: 12
51662891 ACGGTATTGT
51662901 AAAAAAATTAAA
1 AAAAAAATTAAA
* *
51662913 AAAAAACTTGAA
1 AAAAAAATTAAA
*
51662925 AAAAAAATTTAA
1 AAAAAAATTAAA
*
51662937 AAAAAAATTCAA
1 AAAAAAATTAAA
51662949 AAAAAAA
1 AAAAAAA
51662956 GTTTGTATTC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.16
Consensus pattern (12 bp):
AAAAAAATTAAA
Found at i:51662931 original size:24 final size:24
Alignment explanation
Indices: 51662901--51662955 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
51662891 ACGGTATTGT
*
51662901 AAAAAAA-TTAAAAAAAAACTTGAA
1 AAAAAAATTTAAAAAAAAA-TTCAA
51662925 AAAAAAATTTAAAAAAAAATTCAA
1 AAAAAAATTTAAAAAAAAATTCAA
51662949 AAAAAAA
1 AAAAAAA
51662956 GTTTGTATTC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 18 0.62
25 11 0.38
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.16
Consensus pattern (24 bp):
AAAAAAATTTAAAAAAAAATTCAA
Found at i:51663042 original size:31 final size:30
Alignment explanation
Indices: 51663001--51663068 Score: 109
Period size: 31 Copynumber: 2.2 Consensus size: 30
51662991 GTATTGAAGG
* *
51663001 AAAAAAAAGAAGAAAAAATTCGGAATTAAA
1 AAAAAAAAGAAGAAAAAAATCGAAATTAAA
51663031 AAAAAAGAAGAAGAAAAAAATCGAAATTAAA
1 AAAAAA-AAGAAGAAAAAAATCGAAATTAAA
51663062 AAAAAAA
1 AAAAAAA
51663069 GAGTGATTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 7 0.20
31 28 0.80
ACGTcount: A:0.75, C:0.03, G:0.12, T:0.10
Consensus pattern (30 bp):
AAAAAAAAGAAGAAAAAAATCGAAATTAAA
Found at i:51663941 original size:17 final size:15
Alignment explanation
Indices: 51663921--51663959 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 15
51663911 GCGAGCGAGA
51663921 AAATGAACATGAAAAAG
1 AAATGAA-A-GAAAAAG
51663938 AAATGAAAGAAAAAG
1 AAATGAAAGAAAAAG
51663953 AAGATGA
1 AA-ATGA
51663960 GTGGGAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 9 0.43
16 5 0.24
17 7 0.33
ACGTcount: A:0.67, C:0.03, G:0.21, T:0.10
Consensus pattern (15 bp):
AAATGAAAGAAAAAG
Found at i:51677013 original size:97 final size:97
Alignment explanation
Indices: 51676906--51677238 Score: 648
Period size: 97 Copynumber: 3.4 Consensus size: 97
51676896 TTAAATTATG
*
51676906 TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAATATCCAAATTTAAGATTAAATCTG
1 TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAATATCCAAATTTAAGATTAAATCTT
51676971 CATATTTTAATTAAAATATAATTCGGTACTTA
66 CATATTTTAATTAAAATATAATTCGGTACTTA
51677003 TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAATATCCAAATTTAAGATTAAATCTT
1 TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAATATCCAAATTTAAGATTAAATCTT
51677068 CATATTTTAATTAAAATATAATTCGGTACTTA
66 CATATTTTAATTAAAATATAATTCGGTACTTA
51677100 TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAATATCCAAATTTAAGATTAAATCTT
1 TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAATATCCAAATTTAAGATTAAATCTT
*
51677165 CATAATTTAATTAAAATATAATTCGGTACTTA
66 CATATTTTAATTAAAATATAATTCGGTACTTA
51677197 TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAAT
1 TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAAT
51677239 TGTTATTAAA
Statistics
Matches: 234, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
97 234 1.00
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.38
Consensus pattern (97 bp):
TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAATATCCAAATTTAAGATTAAATCTT
CATATTTTAATTAAAATATAATTCGGTACTTA
Found at i:51677311 original size:23 final size:23
Alignment explanation
Indices: 51677276--51677320 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
51677266 CCTTATTTAA
**
51677276 TTCAAATTGATTAT-AATATTATT
1 TTCAAATAAATTATCAA-ATTATT
51677299 TTCAAATAAATTATCAAATTAT
1 TTCAAATAAATTATCAAATTAT
51677321 AAAATGACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.47
Consensus pattern (23 bp):
TTCAAATAAATTATCAAATTATT
Found at i:51677343 original size:11 final size:11
Alignment explanation
Indices: 51677327--51677353 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
51677317 TTATAAAATG
51677327 ACAATATCTCA
1 ACAATATCTCA
51677338 ACAATATCTCA
1 ACAATATCTCA
51677349 ACAAT
1 ACAAT
51677354 TGATAAAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (11 bp):
ACAATATCTCA
Found at i:51680560 original size:92 final size:91
Alignment explanation
Indices: 51680403--51680611 Score: 269
Period size: 92 Copynumber: 2.3 Consensus size: 91
51680393 TTGATTTTAG
* * * *
51680403 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTGTTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATAACTATTAAATTAT
* *
51680468 ATTTAAT-ATTAATTATTTTAAATTGTA
65 ATGTAATAATT-ATTATTTTAAATTATA
*
51680495 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATT-TAATATTAATTATTAAATTA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTAT-ATA-TAACTATTAAATTA
51680559 TATGTAATAATTATTATTTTAAATTATA
64 TATGTAATAATTATTATTTTAAATTATA
* * * *
51680587 CAAATTCATAAAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
51680612 GTTATAATTA
Statistics
Matches: 103, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
90 1 0.01
91 29 0.28
92 70 0.68
93 3 0.03
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.46
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATAACTATTAAATTATA
TGTAATAATTATTATTTTAAATTATA
Found at i:51680574 original size:24 final size:25
Alignment explanation
Indices: 51680539--51680586 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
51680529 TTATGAAATT
51680539 TAATATTAATTA-TTAAATTATATG
1 TAATATTAATTATTTAAATTATATG
51680563 TAATAATT-ATTATTTTAAATTATA
1 TAAT-ATTAATTA-TTTAAATTATA
51680587 CAAATTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 8 0.38
25 3 0.14
26 10 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (25 bp):
TAATATTAATTATTTAAATTATATG
Found at i:51680740 original size:66 final size:63
Alignment explanation
Indices: 51680665--51680875 Score: 192
Period size: 66 Copynumber: 3.4 Consensus size: 63
51680655 AAATATATTT
51680665 AATATTAATTATTTCAAATTTTCATTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTATTT-AAATTTT-ATTTA-AGTATCATATATTATGATTTGAGTAAATTCATATAA
51680730 G
63 G
* * * * **
51680731 AATATTAATTATTAAGAATTTTA-TTAA--ATTATATATT-TTAATT-A-T-AA-T-ATAT-TT
1 AATATTAATTATTTA-AATTTTATTTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
*
51680785 AATAATAATTATGTT-AATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTCATATA
1 AATATTAATTAT-TTAAATTT-TA-TTTA-AGTATCATATATTATGATTTGAGTAAATTCATATA
51680849 AG
62 AG
*
51680851 AATATTAATTATTAAGAATTTTATT
1 AATATTAATTATTTA-AATTTTATT
51680876 AAATTATATA
Statistics
Matches: 113, Mismatches: 15, Indels: 35
0.69 0.09 0.21
Matches are distributed among these distances:
53 5 0.04
54 13 0.12
55 5 0.04
56 4 0.04
57 3 0.03
58 1 0.01
59 10 0.09
60 8 0.07
61 10 0.09
62 1 0.01
63 3 0.03
64 4 0.04
65 9 0.08
66 32 0.28
67 5 0.04
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.49
Consensus pattern (63 bp):
AATATTAATTATTTAAATTTTATTTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:51680765 original size:120 final size:120
Alignment explanation
Indices: 51680627--51680919 Score: 493
Period size: 120 Copynumber: 2.4 Consensus size: 120
51680617 AATTATTTTA
* * * *
51680627 AATTTTATTAAATCATATATTTTAAATAAAATATATTTAATATTAATTAT-TTCAAATTT-TCA-
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT--AATTTAT-AT
*
51680689 TTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
63 TTTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
51680747 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
51680812 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
51680867 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
51680920 TAAATATGAT
Statistics
Matches: 165, Mismatches: 5, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
119 6 0.04
120 157 0.95
121 2 0.01
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:51680787 original size:15 final size:15
Alignment explanation
Indices: 51680752--51680803 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
51680742 TTAAGAATTT
*
51680752 TATTAAATTAT-ATA
1 TATTTAATTATAATA
51680766 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
51680780 TATTTAATAATAAT-
1 TATTTAATTATAATA
51680794 TATGTTAATT
1 TAT-TTAATT
51680804 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:51680902 original size:16 final size:16
Alignment explanation
Indices: 51680881--51680922 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
51680871 TTATTAAATT
*
51680881 ATATATTTTAATTATA
1 ATATATTTTAATAATA
51680897 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
51680912 AT-TATGTTTAA
1 ATATAT-TTTAA
51680923 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:51680907 original size:15 final size:15
Alignment explanation
Indices: 51680872--51680913 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
51680862 TTAAGAATTT
*
51680872 TATTAAATTAT-ATA
1 TATTTAATTATAATA
51680886 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
51680900 TATTTAATAATAAT
1 TATTTAATTATAAT
51680914 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:51681130 original size:150 final size:155
Alignment explanation
Indices: 51680856--51681165 Score: 495
Period size: 150 Copynumber: 2.0 Consensus size: 155
51680846 ATAAGAATAT
* * *
51680856 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATGAAATTATATATTTTAATTAAAATAGATTTAATAATAA-TATGTTT
* *
51680921 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
65 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
51680986 T-A-A-TTACCAAAACAAATTTCTGC
130 TAACATTTACCAAAACAAATTTATGC
* *
51681009 TAATTATTAAGAATTTTATGAAATTATATATTTTAATTAAAATGGGTTTAATAAT-A-ATGTTTA
1 TAATTATTAAGAATTTTATGAAATTATATATTTTAATTAAAATAGATTTAATAATAATATGTTTA
51681072 AATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
66 AATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
51681137 AATCATTTACCAAAACAAATTTATGC
131 AA-CATTTACCAAAACAAATTTATGC
51681163 TAA
1 TAA
51681166 GGGTATTCTA
Statistics
Matches: 145, Mismatches: 8, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
150 70 0.48
151 1 0.01
152 1 0.01
153 51 0.35
154 22 0.15
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.43
Consensus pattern (155 bp):
TAATTATTAAGAATTTTATGAAATTATATATTTTAATTAAAATAGATTTAATAATAATATGTTTA
AATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
AACATTTACCAAAACAAATTTATGC
Found at i:51681314 original size:16 final size:16
Alignment explanation
Indices: 51681289--51681324 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
51681279 GATTTGCTAT
*
51681289 TACACTTCTAATCCAA
1 TACACCTCTAATCCAA
51681305 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
51681321 TACA
1 TACA
51681325 GCGAACCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.39, C:0.33, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:51681946 original size:18 final size:19
Alignment explanation
Indices: 51681906--51681947 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
51681896 TCTTGTTGAC
*
51681906 ATAAAATTCTTAAATAACT
1 ATAAAATACTTAAATAACT
*
51681925 -TAAAATACTT-AATAATT
1 ATAAAATACTTAAATAACT
51681942 ATAAAA
1 ATAAAA
51681948 AATTTGAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (19 bp):
ATAAAATACTTAAATAACT
Found at i:51684318 original size:16 final size:17
Alignment explanation
Indices: 51684297--51684332 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
51684287 TTTTCTCTTC
51684297 TTATTTTTAAT-TTTTT
1 TTATTTTTAATATTTTT
*
51684313 TTATTTTTTATATTTTT
1 TTATTTTTAATATTTTT
51684330 TTA
1 TTA
51684333 ATAATTTGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (17 bp):
TTATTTTTAATATTTTT
Found at i:51685682 original size:12 final size:12
Alignment explanation
Indices: 51685665--51685689 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51685655 ATTTCATTCC
51685665 ACATATATATAT
1 ACATATATATAT
51685677 ACATATATATAT
1 ACATATATATAT
51685689 A
1 A
51685690 AACACATAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (12 bp):
ACATATATATAT
Found at i:51686068 original size:24 final size:25
Alignment explanation
Indices: 51686030--51686209 Score: 110
Period size: 25 Copynumber: 7.6 Consensus size: 25
51686020 GCATATATAC
*
51686030 AAAATTGGACTGCATTTGTACATAA
1 AAAATTGGACAGCATTTGTACATAA
* *
51686055 AAAATT-GACAGCA--TATACATAT
1 AAAATTGGACAGCATTTGTACATAA
* * *
51686077 ATAATTGGACTGCATTTGTACATCA
1 AAAATTGGACAGCATTTGTACATAA
* *
51686102 AAAATT-GACAGCA--TATACATAT
1 AAAATTGGACAGCATTTGTACATAA
* * * *
51686124 ATAATTGGACTGCATTTGTAGATCA
1 AAAATTGGACAGCATTTGTACATAA
* *
51686149 AAAATT-GACAGCA--TATACATAT
1 AAAATTGGACAGCATTTGTACATAA
* * * * *
51686171 ATAATTGGACTGCATTTATACGTCA
1 AAAATTGGACAGCATTTGTACATAA
*
51686196 AAAAGT-GACAGCAT
1 AAAATTGGACAGCAT
51686210 ATACATATAT
Statistics
Matches: 113, Mismatches: 33, Indels: 19
0.68 0.20 0.12
Matches are distributed among these distances:
22 33 0.29
23 18 0.16
24 25 0.22
25 37 0.33
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (25 bp):
AAAATTGGACAGCATTTGTACATAA
Found at i:51686083 original size:47 final size:47
Alignment explanation
Indices: 51686007--51686219 Score: 331
Period size: 47 Copynumber: 4.6 Consensus size: 47
51685997 ATTTTCACAC
* * *
51686007 CAAAATTTGGACAGCATAT--ATACAAAATTGGACTGCATTTGTACAT
1 CAAAAATT-GACAGCATATACATATATAATTGGACTGCATTTGTACAT
*
51686053 AAAAAATTGACAGCATATACATATATAATTGGACTGCATTTGTACAT
1 CAAAAATTGACAGCATATACATATATAATTGGACTGCATTTGTACAT
*
51686100 CAAAAATTGACAGCATATACATATATAATTGGACTGCATTTGTAGAT
1 CAAAAATTGACAGCATATACATATATAATTGGACTGCATTTGTACAT
* *
51686147 CAAAAATTGACAGCATATACATATATAATTGGACTGCATTTATACGT
1 CAAAAATTGACAGCATATACATATATAATTGGACTGCATTTGTACAT
*
51686194 CAAAAAGTGACAGCATATACATATAT
1 CAAAAATTGACAGCATATACATATAT
51686220 TTGACAGCAT
Statistics
Matches: 155, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
45 10 0.06
46 6 0.04
47 139 0.90
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.31
Consensus pattern (47 bp):
CAAAAATTGACAGCATATACATATATAATTGGACTGCATTTGTACAT
Found at i:51686226 original size:20 final size:20
Alignment explanation
Indices: 51686201--51686239 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
51686191 CGTCAAAAAG
*
51686201 TGACAGCATATACATATATT
1 TGACAGCATATACACATATT
51686221 TGACAGCATATACACATAT
1 TGACAGCATATACACATAT
51686240 AATTGGACTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (20 bp):
TGACAGCATATACACATATT
Found at i:51686229 original size:67 final size:67
Alignment explanation
Indices: 51686153--51686286 Score: 241
Period size: 67 Copynumber: 2.0 Consensus size: 67
51686143 AGATCAAAAA
*
51686153 TTGACAGCATATACATATATAATTGGACTGCATTTATACGTCAAAAAGTGACAGCATATACATAT
1 TTGACAGCATATACACATATAATTGGACTGCATTTATACGTCAAAAAGTGACAGCATATACATAT
51686218 AT
66 AT
* *
51686220 TTGACAGCATATACACATATAATTGGACTGCATTTATACGTTAAAAATTGACAGCATATACATAT
1 TTGACAGCATATACACATATAATTGGACTGCATTTATACGTCAAAAAGTGACAGCATATACATAT
51686285 AT
66 AT
51686287 AATTGGACTG
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 64 1.00
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.32
Consensus pattern (67 bp):
TTGACAGCATATACACATATAATTGGACTGCATTTATACGTCAAAAAGTGACAGCATATACATAT
AT
Found at i:51686243 original size:114 final size:113
Alignment explanation
Indices: 51686106--51686332 Score: 375
Period size: 114 Copynumber: 2.0 Consensus size: 113
51686096 ACATCAAAAA
* *
51686106 TTGACAGCATATACATATATAATTGGACTGCATTTGTA-GATCAAAAATTGACAGCATATACATA
1 TTGACAGCATATACACATATAATTGGACTGCATTTATACG-TCAAAAATTGACAGCATATACATA
* *
51686170 TATAATTGGACTGCATTTATACGTCAAAAAGTGACAGCATATACATATAT
65 TATAATTGGACTGC-CTTATACATCAAAAAGTGACAGCATATACATATAT
*
51686220 TTGACAGCATATACACATATAATTGGACTGCATTTATACGTTAAAAATTGACAGCATATACATAT
1 TTGACAGCATATACACATATAATTGGACTGCATTTATACGTCAAAAATTGACAGCATATACATAT
*
51686285 ATAATTGGACTGCCTTATACATCAAAAATTGACAGCATATACATATAT
66 ATAATTGGACTGCCTTATACATCAAAAAGTGACAGCATATACATATAT
51686333 AATTGGACTG
Statistics
Matches: 106, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
113 32 0.30
114 73 0.69
115 1 0.01
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.32
Consensus pattern (113 bp):
TTGACAGCATATACACATATAATTGGACTGCATTTATACGTCAAAAATTGACAGCATATACATAT
ATAATTGGACTGCCTTATACATCAAAAAGTGACAGCATATACATATAT
Found at i:51686243 original size:161 final size:160
Alignment explanation
Indices: 51686059--51686375 Score: 526
Period size: 161 Copynumber: 2.0 Consensus size: 160
51686049 ACATAAAAAA
* *
51686059 TTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAAAAATTGACAGCATATACATAT
1 TTGACAGCATATACACATATAATTGGACTGCATTTATACATCAAAAATTGACAGCATATACATAT
* * *
51686124 ATAATTGGACTGCATTTGTAGATCAAAAATTGACAGCATATACATATATAATTGGACTGCATTTA
66 ATAATTGGACTGC-CTTATACATCAAAAATTGACAGCATATACATATATAATTGGACTGCATTTA
*
51686189 TACGTCAAAAAGTGACAGCATATACATATAT
130 TACATCAAAAAGTGACAGCATATACATATAT
* *
51686220 TTGACAGCATATACACATATAATTGGACTGCATTTATACGTTAAAAATTGACAGCATATACATAT
1 TTGACAGCATATACACATATAATTGGACTGCATTTATACATCAAAAATTGACAGCATATACATAT
*
51686285 ATAATTGGACTGCCTTATACATCAAAAATTGACAGCATATACATATATAATTGGACTGCATTTGT
66 ATAATTGGACTGCCTTATACATCAAAAATTGACAGCATATACATATATAATTGGACTGCATTTAT
**
51686350 ACATCAAAATTTGACAGCATATACAT
131 ACATCAAAAAGTGACAGCATATACAT
51686376 TCATTTACTC
Statistics
Matches: 145, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
160 71 0.49
161 74 0.51
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.32
Consensus pattern (160 bp):
TTGACAGCATATACACATATAATTGGACTGCATTTATACATCAAAAATTGACAGCATATACATAT
ATAATTGGACTGCCTTATACATCAAAAATTGACAGCATATACATATATAATTGGACTGCATTTAT
ACATCAAAAAGTGACAGCATATACATATAT
Found at i:51686320 original size:46 final size:47
Alignment explanation
Indices: 51686220--51686375 Score: 251
Period size: 47 Copynumber: 3.3 Consensus size: 47
51686210 ATACATATAT
* * *
51686220 TTGACAGCATATACACATATAATTGGACTGCATTTATACGTTAAAAA
1 TTGACAGCATATACATATATAATTGGACTGCATTTATACATCAAAAA
*
51686267 TTGACAGCATATACATATATAATTGGACTGC-CTTATACATCAAAAA
1 TTGACAGCATATACATATATAATTGGACTGCATTTATACATCAAAAA
* *
51686313 TTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAAAAT
1 TTGACAGCATATACATATATAATTGGACTGCATTTATACATCAAAAA
51686360 TTGACAGCATATACAT
1 TTGACAGCATATACAT
51686376 TCATTTACTC
Statistics
Matches: 101, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
46 43 0.43
47 58 0.57
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (47 bp):
TTGACAGCATATACATATATAATTGGACTGCATTTATACATCAAAAA
Found at i:51688648 original size:80 final size:82
Alignment explanation
Indices: 51688505--51688690 Score: 209
Period size: 80 Copynumber: 2.3 Consensus size: 82
51688495 TCCTCGTTCA
* * * *
51688505 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAT
*
51688570 -T-TAATAAC-TCGCAC
66 ATATAATAACTTAGCAC
* * * **
51688584 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGG
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGGCCTTCGGGA-CTTAACCCGG
* *
51688648 ATATATATTCACTTAGCAC
64 ATATATAATAACTTAGCAC
*
51688667 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
51688691 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
79 3 0.03
80 52 0.59
81 1 0.01
82 27 0.31
83 5 0.06
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (82 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAT
ATATAATAACTTAGCAC
Found at i:51688649 original size:40 final size:40
Alignment explanation
Indices: 51688505--51688635 Score: 190
Period size: 40 Copynumber: 3.3 Consensus size: 40
51688495 TCCTCGTTCA
* * * *
51688505 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
*
51688545 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
* *
51688585 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
*
51688625 AAGGCCTTCGG
1 AATGCCTTCGG
51688636 ATCTTAGTCC
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 82 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
Found at i:51690468 original size:43 final size:43
Alignment explanation
Indices: 51690380--51690503 Score: 128
Period size: 43 Copynumber: 2.9 Consensus size: 43
51690370 AGCTAGTGCA
* * *** * *
51690380 ATGCCAACATCCCAGACGTGGTCTTACATGTAATCACATA-CCG
1 ATGCCGACGTCCCAGACGTGGTCTTACACAAAAACACA-AGTCG
51690423 ATGCC-ACTGTCCCAGACAG-GGTCTTACACAAAAACACAAGTCG
1 ATGCCGAC-GTCCCAGAC-GTGGTCTTACACAAAAACACAAGTCG
*
51690466 ATGCCGACGTCCCAGACGTGGTCTTACACGAAAACACA
1 ATGCCGACGTCCCAGACGTGGTCTTACACAAAAACACA
51690504 TATCAGAGTC
Statistics
Matches: 69, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
42 4 0.06
43 62 0.90
44 3 0.04
ACGTcount: A:0.32, C:0.31, G:0.19, T:0.19
Consensus pattern (43 bp):
ATGCCGACGTCCCAGACGTGGTCTTACACAAAAACACAAGTCG
Found at i:51694693 original size:18 final size:19
Alignment explanation
Indices: 51694658--51694694 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
51694648 ATAAATTTTA
51694658 AAATTCAAAATATTTATAT
1 AAATTCAAAATATTTATAT
*
51694677 AAATTCCAAAT-TTTATAT
1 AAATTCAAAATATTTATAT
51694695 TTTTTAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.43
Consensus pattern (19 bp):
AAATTCAAAATATTTATAT
Found at i:51697884 original size:38 final size:38
Alignment explanation
Indices: 51697833--51697908 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
51697823 CAAAATCCTC
51697833 CCTATCTACAAGTAAGACTTGGTTTTCTTTTTATCCAA
1 CCTATCTACAAGTAAGACTTGGTTTTCTTTTTATCCAA
* *
51697871 CCTATCTATAAGTAAGGCTTGGTTTTCTTTTTATCCAA
1 CCTATCTACAAGTAAGACTTGGTTTTCTTTTTATCCAA
51697909 GTTTTCATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.25, C:0.20, G:0.12, T:0.43
Consensus pattern (38 bp):
CCTATCTACAAGTAAGACTTGGTTTTCTTTTTATCCAA
Found at i:51701998 original size:24 final size:22
Alignment explanation
Indices: 51701962--51702019 Score: 64
Period size: 24 Copynumber: 2.6 Consensus size: 22
51701952 TATACTGTTC
*
51701962 ATTTTTTAAAATTAAAAATATTTA
1 ATTTTTTATAATTAAAAA-A-TTA
**
51701986 ATTTTTTATAATTTTAAAATTA
1 ATTTTTTATAATTAAAAAATTA
51702008 A-TTTTTATAATT
1 ATTTTTTATAATT
51702020 TTTTAAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 11 0.35
22 4 0.13
23 1 0.03
24 15 0.48
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
ATTTTTTATAATTAAAAAATTA
Found at i:51702022 original size:22 final size:24
Alignment explanation
Indices: 51701983--51702032 Score: 70
Period size: 21 Copynumber: 2.2 Consensus size: 24
51701973 TTAAAAATAT
51701983 TTAATTTTTTATAA-TTTT-AAAA
1 TTAATTTTTTATAATTTTTAAAAA
51702005 TTAA-TTTTTATAATTTTTTAAAAA
1 TTAATTTTTTATAA-TTTTTAAAAA
51702029 TTAA
1 TTAA
51702033 AAAAAATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 9 0.36
22 4 0.16
23 4 0.16
24 8 0.32
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (24 bp):
TTAATTTTTTATAATTTTTAAAAA
Found at i:51704405 original size:24 final size:24
Alignment explanation
Indices: 51704374--51704419 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
51704364 ATGAAACAAT
*
51704374 AATAAAATGAGA-GATTAAATTTA
1 AATAAAATAAGAGGATTAAATTTA
*
51704397 AATAGAAATAAGAGGATTGAATT
1 AATA-AAATAAGAGGATTAAATT
51704420 GAAGCGCGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 7 0.37
25 8 0.42
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.28
Consensus pattern (24 bp):
AATAAAATAAGAGGATTAAATTTA
Found at i:51704975 original size:13 final size:13
Alignment explanation
Indices: 51704953--51704982 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
51704943 CCGAACAAAG
51704953 AAAAAGAAAAATA
1 AAAAAGAAAAATA
*
51704966 AAAAATAAAAATA
1 AAAAAGAAAAATA
51704979 AAAA
1 AAAA
51704983 TCAAATCCCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.87, C:0.00, G:0.03, T:0.10
Consensus pattern (13 bp):
AAAAAGAAAAATA
Found at i:51705611 original size:50 final size:50
Alignment explanation
Indices: 51705553--51706292 Score: 277
Period size: 50 Copynumber: 14.8 Consensus size: 50
51705543 GTGATGTAAA
* * * * *
51705553 GGAAGTAAGATTTACTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAG
1 GGAAGTAAGATTTACCGATGTGGCTTTAATCTATTCCACTGCACTGCCAG
* * * ** * ***
51705603 GGAAGTAAGATTTGCCGCTGTGGCTTTAATCTTTTTAACTGCAATGTTGG
1 GGAAGTAAGATTTACCGATGTGGCTTTAATCTATTCCACTGCACTGCCAG
** * *
51705653 GGAAGCGAGATTTACCGATGTGGCTTTAATCTACTCCACTGCACCGCCAG
1 GGAAGTAAGATTTACCGATGTGGCTTTAATCTATTCCACTGCACTGCCAG
* ** * ** * *
51705703 GGAAGTAGGATTCGCC-ACTGTGGCTTTAATCTTTTGAACTGCAATGTC-G
1 GGAAGTAAGATTTACCGA-TGTGGCTTTAATCTATTCCACTGCACTGCCAG
** * ** * *
51705752 GAGAAGCGAGATTCACCGATGTGGCTTTAATCTGCTCCACTGCACCGCTAG
1 G-GAAGTAAGATTTACCGATGTGGCTTTAATCTATTCCACTGCACTGCCAG
* * ** * * * * ** * * ** *
51705803 AGAAGTAGGATTCGCCGCTATGGCTTTAACCTTTTTAACTACAATATCGG
1 GGAAGTAAGATTTACCGATGTGGCTTTAATCTATTCCACTGCACTGCCAG
** * ** * * *
51705853 GGAAGCGAGATTCACCGATGTGGCTTTAATCTGCTCCACTACACCGCCAA
1 GGAAGTAAGATTTACCGATGTGGCTTTAATCTATTCCACTGCACTGCCAG
* ** * * ** * * *
51705903 GGAAGTAGGATTCGCCGCTGTGGCTTTAATCTTTTTAACTGCAATGTCGG
1 GGAAGTAAGATTTACCGATGTGGCTTTAATCTATTCCACTGCACTGCCAG
* * * ** * *
51705953 GGAAGCGAA-ATTCACCGATATGGCTTTAATCTGCTCCACTGCACCGACAG
1 GGAAG-TAAGATTTACCGATGTGGCTTTAATCTATTCCACTGCACTGCCAG
* * ** * * ** * *
51706003 AGAAGTAGGATTCGCCGCTGTGGCTTTAATCTTTTTAACTGCAATGTCAG
1 GGAAGTAAGATTTACCGATGTGGCTTTAATCTATTCCACTGCACTGCCAG
** * * ** *
51706053 GGAAGCGAGATTCATCGATGTGGCTTTAATCTGCTCCACTGCA-TCGCTAG
1 GGAAGTAAGATTTACCGATGTGGCTTTAATCTATTCCACTGCACT-GCCAG
* * *** * * * ** * * *
51706103 AGAAGTAGGATTCGTCGCTGTGGCTTTAACCTTTTTAACTGCAATGTCGG
1 GGAAGTAAGATTTACCGATGTGGCTTTAATCTATTCCACTGCACTGCCAG
* * ** * * *
51706153 GGAAGTGAGATTCACCGATGTGGCTTTAATCTGCT-CACTGCACCGCTAA
1 GGAAGTAAGATTTACCGATGTGGCTTTAATCTATTCCACTGCACTGCCAG
* * * * ** * *
51706202 GGAAGTAGGATTTGCCGCTGTGGCTTTAATCTTTTTAACTGCAAC-GTCGG
1 GGAAGTAAGATTTACCGATGTGGCTTTAATCTATTCCACTGC-ACTGCCAG
** * * * *
51706252 GGAAGCGAGATTCATCGATGTGACTTTAATCTGTTCCACTG
1 GGAAGTAAGATTTACCGATGTGGCTTTAATCTATTCCACTG
51706293 TAATCTCAGG
Statistics
Matches: 487, Mismatches: 193, Indels: 20
0.70 0.28 0.03
Matches are distributed among these distances:
49 40 0.08
50 441 0.91
51 6 0.01
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.30
Consensus pattern (50 bp):
GGAAGTAAGATTTACCGATGTGGCTTTAATCTATTCCACTGCACTGCCAG
Found at i:51705702 original size:100 final size:100
Alignment explanation
Indices: 51705575--51706292 Score: 1087
Period size: 100 Copynumber: 7.2 Consensus size: 100
51705565 TACTGTTGTA
* * * * *
51705575 GCTTCAATCTGTTCCACTGCACTGCCAGGGAAGTAAGATTTGCCGCTGTGGCTTTAATCTTTTTA
1 GCTTTAATCTGCTCCACTGCACCGCCAGGGAAGTAGGATTCGCCGCTGTGGCTTTAATCTTTTTA
* *
51705640 ACTGCAATGTTGGGGAAGCGAGATTTACCGATGTG
66 ACTGCAATGTCGGGGAAGCGAGATTCACCGATGTG
* * *
51705675 GCTTTAATCTACTCCACTGCACCGCCAGGGAAGTAGGATTCGCCACTGTGGCTTTAATCTTTTGA
1 GCTTTAATCTGCTCCACTGCACCGCCAGGGAAGTAGGATTCGCCGCTGTGGCTTTAATCTTTTTA
*
51705740 ACTGCAATGTCGGAGAAGCGAGATTCACCGATGTG
66 ACTGCAATGTCGGGGAAGCGAGATTCACCGATGTG
* * * *
51705775 GCTTTAATCTGCTCCACTGCACCGCTAGAGAAGTAGGATTCGCCGCTATGGCTTTAACCTTTTTA
1 GCTTTAATCTGCTCCACTGCACCGCCAGGGAAGTAGGATTCGCCGCTGTGGCTTTAATCTTTTTA
* *
51705840 ACTACAATATCGGGGAAGCGAGATTCACCGATGTG
66 ACTGCAATGTCGGGGAAGCGAGATTCACCGATGTG
* *
51705875 GCTTTAATCTGCTCCACTACACCGCCAAGGAAGTAGGATTCGCCGCTGTGGCTTTAATCTTTTTA
1 GCTTTAATCTGCTCCACTGCACCGCCAGGGAAGTAGGATTCGCCGCTGTGGCTTTAATCTTTTTA
* *
51705940 ACTGCAATGTCGGGGAAGCGAAATTCACCGATATG
66 ACTGCAATGTCGGGGAAGCGAGATTCACCGATGTG
* *
51705975 GCTTTAATCTGCTCCACTGCACCGACAGAGAAGTAGGATTCGCCGCTGTGGCTTTAATCTTTTTA
1 GCTTTAATCTGCTCCACTGCACCGCCAGGGAAGTAGGATTCGCCGCTGTGGCTTTAATCTTTTTA
* *
51706040 ACTGCAATGTCAGGGAAGCGAGATTCATCGATGTG
66 ACTGCAATGTCGGGGAAGCGAGATTCACCGATGTG
* * * * *
51706075 GCTTTAATCTGCTCCACTGCATCGCTAGAGAAGTAGGATTCGTCGCTGTGGCTTTAACCTTTTTA
1 GCTTTAATCTGCTCCACTGCACCGCCAGGGAAGTAGGATTCGCCGCTGTGGCTTTAATCTTTTTA
*
51706140 ACTGCAATGTCGGGGAAGTGAGATTCACCGATGTG
66 ACTGCAATGTCGGGGAAGCGAGATTCACCGATGTG
* * *
51706175 GCTTTAATCTGCT-CACTGCACCGCTAAGGAAGTAGGATTTGCCGCTGTGGCTTTAATCTTTTTA
1 GCTTTAATCTGCTCCACTGCACCGCCAGGGAAGTAGGATTCGCCGCTGTGGCTTTAATCTTTTTA
* *
51706239 ACTGCAACGTCGGGGAAGCGAGATTCATCGATGTG
66 ACTGCAATGTCGGGGAAGCGAGATTCACCGATGTG
* *
51706274 ACTTTAATCTGTTCCACTG
1 GCTTTAATCTGCTCCACTG
51706293 TAATCTCAGG
Statistics
Matches: 559, Mismatches: 58, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
99 88 0.16
100 471 0.84
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (100 bp):
GCTTTAATCTGCTCCACTGCACCGCCAGGGAAGTAGGATTCGCCGCTGTGGCTTTAATCTTTTTA
ACTGCAATGTCGGGGAAGCGAGATTCACCGATGTG
Found at i:51706338 original size:46 final size:46
Alignment explanation
Indices: 51706280--51706536 Score: 160
Period size: 46 Copynumber: 5.8 Consensus size: 46
51706270 TGTGACTTTA
*
51706280 ATCTGTTCCACTGTAATCTCAGGGAGATAAGATCTGTAATTATTCG
1 ATCTATTCCACTGTAATCTCAGGGAGATAAGATCTGTAATTATTCG
* * * *
51706326 GTCTATTCCACTGTAATATCAGGGAGATAAGACCTG-----ATGCG
1 ATCTATTCCACTGTAATCTCAGGGAGATAAGATCTGTAATTATTCG
* * * * *
51706367 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTATT-TT-A
1 ATCTATTCCACTGTAATC-TCAGGGAGATAAGAT-CTGTAATTATTCG
** * * * * * ** *
51706411 ATCCGTTCTACTGTAATCTCAAGGAAATAGGA--T-TACTGGCTTCA
1 ATCTATTCCACTGTAATCTCAGGGAGATAAGATCTGTAAT-TATTCG
** * * *
51706455 ATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTGTAATTCTTCG
1 ATCTATTCCACTGTAATCTCAGGGAGATAAGATCTGTAATTATTCG
* *
51706501 GTCTATTCCACTGTAATCTCAGGGAGATAAAATCTG
1 ATCTATTCCACTGTAATCTCAGGGAGATAAGATCTG
51706537 ATGCGATCTA
Statistics
Matches: 157, Mismatches: 40, Indels: 28
0.70 0.18 0.12
Matches are distributed among these distances:
41 33 0.21
42 2 0.01
43 2 0.01
44 48 0.31
45 2 0.01
46 67 0.43
47 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (46 bp):
ATCTATTCCACTGTAATCTCAGGGAGATAAGATCTGTAATTATTCG
Found at i:51706584 original size:175 final size:175
Alignment explanation
Indices: 51706279--51706662 Score: 669
Period size: 175 Copynumber: 2.2 Consensus size: 175
51706269 ATGTGACTTT
* *
51706279 AATCTGTTCCACTGTAATCTCAGGGAGATAAGATCTGTAATTATTCGGTCTATTCCACTGTAATA
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGTAATTATTCGGTCTATTCCACTGTAATA
*
51706344 TCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTT
66 TCAGGGAGATAAAACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTT
*
51706409 TAATCCGTTCTACTGTAATCTCAAGGAAATAGGATTACTGGCTTC
131 TAATCCGTTCCACTGTAATCTCAAGGAAATAGGATTACTGGCTTC
* * *
51706454 AATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTGTAATTCTTCGGTCTATTCCACTGTAATC
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGTAATTATTCGGTCTATTCCACTGTAATA
* *
51706519 TCAGGGAGATAAAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTTTATTT
66 TCAGGGAGATAAAACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTT
* *
51706584 TAATTCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTC
131 TAATCCGTTCCACTGTAATCTCAAGGAAATAGGATTACTGGCTTC
51706629 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
51706663 TCACGATTTT
Statistics
Matches: 197, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
175 197 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (175 bp):
AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGTAATTATTCGGTCTATTCCACTGTAATA
TCAGGGAGATAAAACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTT
TAATCCGTTCCACTGTAATCTCAAGGAAATAGGATTACTGGCTTC
Found at i:51706602 original size:85 final size:85
Alignment explanation
Indices: 51706331--51706610 Score: 283
Period size: 85 Copynumber: 3.2 Consensus size: 85
51706321 ATTCGGTCTA
* * *
51706331 TTCCACTGTAATATCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
1 TTCCACTGTAATCTCAGGGAGATAAAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
* *
51706396 AGATCCTTTATTTTAATCCG
66 AGATCTTTTATTTTAATTCG
* * * * * * * * * ** * *
51706416 TTCTACTGTAATCTCAAGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTATAA-TCTCAGGGA
1 TTCCACTGTAATCTCAGGGAGATA-AAAT-CT-GATGCGATCTACTCTACTGTAACT-TCAGAGA
* * *** *
51706480 GATAAGATCTGTAATTCTTCGGTCTA
62 GATAAGATCTTTTATT-TTAATTC-G
51706506 TTCCACTGTAATCTCAGGGAGATAAAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
1 TTCCACTGTAATCTCAGGGAGATAAAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
51706571 AGATCTTTTATTTTAATTCG
66 AGATCTTTTATTTTAATTCG
51706591 TTCCACTGTAATCTCAGGGA
1 TTCCACTGTAATCTCAGGGA
51706611 AATAGGATTA
Statistics
Matches: 145, Mismatches: 43, Indels: 14
0.72 0.21 0.07
Matches are distributed among these distances:
85 40 0.28
86 4 0.03
87 38 0.26
88 37 0.26
89 5 0.03
90 21 0.14
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (85 bp):
TTCCACTGTAATCTCAGGGAGATAAAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
AGATCTTTTATTTTAATTCG
Found at i:51707940 original size:15 final size:15
Alignment explanation
Indices: 51707931--51707959 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
51707921 CTTTTTTATT
51707931 TTTTCATTTTTCATG
1 TTTTCATTTTTCATG
51707946 TTTTCATTTTTCAT
1 TTTTCATTTTTCAT
51707960 CATTTTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.03, T:0.69
Consensus pattern (15 bp):
TTTTCATTTTTCATG
Found at i:51707957 original size:7 final size:7
Alignment explanation
Indices: 51707930--51707959 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
51707920 ACTTTTTTAT
51707930 TTTTTCA
1 TTTTTCA
51707937 TTTTTCA
1 TTTTTCA
51707944 TGTTTTCA
1 T-TTTTCA
51707952 TTTTTCA
1 TTTTTCA
51707959 T
1 T
51707960 CATTTTTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.13, C:0.13, G:0.03, T:0.70
Consensus pattern (7 bp):
TTTTTCA
Found at i:51708865 original size:6 final size:6
Alignment explanation
Indices: 51708856--51708899 Score: 61
Period size: 6 Copynumber: 6.8 Consensus size: 6
51708846 ATTTTTTTAT
51708856 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTTTG ATTTTG AATTTT
1 ATTTTG ATTTTG ATTTTG ATTTTG A--TTTTG ATTTTG -ATTTT
51708900 TTTATTGAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
6 24 0.69
7 5 0.14
8 6 0.17
ACGTcount: A:0.18, C:0.00, G:0.14, T:0.68
Consensus pattern (6 bp):
ATTTTG
Found at i:51713884 original size:18 final size:18
Alignment explanation
Indices: 51713861--51713897 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
51713851 AAATATGTAG
51713861 ATAAATATATAA-ACTAAT
1 ATAAATA-ATAATACTAAT
51713879 ATAAATAATAATACTAAT
1 ATAAATAATAATACTAAT
51713897 A
1 A
51713898 ATAATGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (18 bp):
ATAAATAATAATACTAAT
Found at i:51714705 original size:6 final size:6
Alignment explanation
Indices: 51714694--51714726 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
51714684 CCGAACAAAG
51714694 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAA
51714727 TCCCCCAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:51715139 original size:18 final size:19
Alignment explanation
Indices: 51715104--51715142 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
51715094 ATAACGTGTT
* *
51715104 ATAAAATAAAAGATAGAGA
1 ATAAAATAAAACAAAGAGA
51715123 ATAAAA-AAAACAAAGAGA
1 ATAAAATAAAACAAAGAGA
51715141 AT
1 AT
51715143 GGGAGAGCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.72, C:0.03, G:0.13, T:0.13
Consensus pattern (19 bp):
ATAAAATAAAACAAAGAGA
Found at i:51717205 original size:28 final size:27
Alignment explanation
Indices: 51717165--51717218 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
51717155 GGCTGCTATT
*
51717165 TCCTTTTTCATTTCCCCTTTTTTTCTC
1 TCCTTTTTCATTTCCCCTCTTTTTCTC
* *
51717192 TCCTTTTTATATTTTCCCTCTTTTTCT
1 TCCTTTTT-CATTTCCCCTCTTTTTCT
51717219 TCCCTACTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 8 0.35
28 15 0.65
ACGTcount: A:0.06, C:0.30, G:0.00, T:0.65
Consensus pattern (27 bp):
TCCTTTTTCATTTCCCCTCTTTTTCTC
Found at i:51719587 original size:26 final size:27
Alignment explanation
Indices: 51719554--51719605 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
51719544 TGAGTTGAGA
51719554 AGTTTATTTAATT-AAGAAATTAATTT
1 AGTTTATTTAATTAAAGAAATTAATTT
*
51719580 AGTTTATTTAATTAAATAAATTAATT
1 AGTTTATTTAATTAAAGAAATTAATT
51719606 GATTAAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (27 bp):
AGTTTATTTAATTAAAGAAATTAATTT
Found at i:51720467 original size:22 final size:22
Alignment explanation
Indices: 51720435--51720477 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
51720425 TCTGAAAATT
* *
51720435 AAAAAGGGCCGCTAAAGGCCTA
1 AAAAAGCGCCGCTAAAAGCCTA
51720457 AAAAAGCGCCGCTAAAAGCCT
1 AAAAAGCGCCGCTAAAAGCCT
51720478 GTTTTGGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.26, G:0.23, T:0.09
Consensus pattern (22 bp):
AAAAAGCGCCGCTAAAAGCCTA
Found at i:51721768 original size:21 final size:20
Alignment explanation
Indices: 51721726--51721768 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
51721716 AAGAGAAAAC
*
51721726 TTTGAAAATAATTTAGTCTA
1 TTTGAAAATAATTTAATCTA
* *
51721746 TTTGAAATATTATTTAATTTA
1 TTTGAAA-ATAATTTAATCTA
51721767 TT
1 TT
51721769 GTAATTAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.53
Consensus pattern (20 bp):
TTTGAAAATAATTTAATCTA
Found at i:51738873 original size:19 final size:19
Alignment explanation
Indices: 51738849--51738896 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
51738839 TTCTTTTATC
51738849 TTTCTTCTTATCGTTT-CTT
1 TTTCTTCTTAT-GTTTACTT
51738868 TTTCTTCTT-TGTTTACCTT
1 TTTCTTCTTATGTTTA-CTT
51738887 TTTCTT-TTAT
1 TTTCTTCTTAT
51738897 TTCCTACCGC
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 4 0.15
18 3 0.12
19 19 0.73
ACGTcount: A:0.06, C:0.19, G:0.04, T:0.71
Consensus pattern (19 bp):
TTTCTTCTTATGTTTACTT
Found at i:51739571 original size:54 final size:55
Alignment explanation
Indices: 51739412--51739630 Score: 184
Period size: 54 Copynumber: 4.1 Consensus size: 55
51739402 TGACAGGCTG
* * * * *
51739412 TGTGT-CAAACCGTGTAACTCTTTGTCTTGAGTCACATGGGT-GCGTGCTAAGCC-
1 TGTGTCCAAACCGTGTAACTCTCTGACTTGAGTCACA-CGGTCGTGTGCTAGGCCA
* * *
51739465 -GTGTCCAAACAGTGTAACTCTCTGACTTGAGTCACACGGGCGTATG-TCAGGCCA
1 TGTGTCCAAACCGTGTAACTCTCTGACTTGAGTCACACGGTCGTGTGCT-AGGCCA
**
51739519 TGTGT-CTGACCGTGTAACTCTCTGACTTGAGTCACACGGTCGTGTGCTAGGCCA
1 TGTGTCCAAACCGTGTAACTCTCTGACTTGAGTCACACGGTCGTGTGCTAGGCCA
* * ** * * * * *
51739573 TATG-ACAAACCGTGTAAGGCAT-TGACATGAGCCACACAGTCATGTTCTAGGCCA
1 TGTGTCCAAACCGTGTAACTC-TCTGACTTGAGTCACACGGTCGTGTGCTAGGCCA
51739627 TGTG
1 TGTG
51739631 AGCCGCATGG
Statistics
Matches: 134, Mismatches: 24, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
52 7 0.05
53 35 0.26
54 86 0.64
55 6 0.04
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.27
Consensus pattern (55 bp):
TGTGTCCAAACCGTGTAACTCTCTGACTTGAGTCACACGGTCGTGTGCTAGGCCA
Found at i:51740244 original size:28 final size:28
Alignment explanation
Indices: 51740181--51740238 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
51740171 GGTAGGACTT
* *
51740181 TGAATCTGTATCTGGTATGCTCTGCATC
1 TGAATCTGTATCTGATATACTCTGCATC
* *
51740209 TGAATCTGTATCTGATATACTTTGCTTC
1 TGAATCTGTATCTGATATACTCTGCATC
51740237 TG
1 TG
51740239 TTTCTGATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.43
Consensus pattern (28 bp):
TGAATCTGTATCTGATATACTCTGCATC
Found at i:51744030 original size:18 final size:18
Alignment explanation
Indices: 51744005--51744047 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
51743995 TTGGGCTAAG
51744005 TGGG-CCACACGGGCGTA
1 TGGGCCCACACGGGCGTA
51744022 TGGGCCCACACGGGCGTA
1 TGGGCCCACACGGGCGTA
*
51744040 TGGACCCA
1 TGGGCCCA
51744048 TTTTTACCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 4 0.17
18 20 0.83
ACGTcount: A:0.19, C:0.33, G:0.37, T:0.12
Consensus pattern (18 bp):
TGGGCCCACACGGGCGTA
Found at i:51749218 original size:3 final size:3
Alignment explanation
Indices: 51749210--51749323 Score: 210
Period size: 3 Copynumber: 38.0 Consensus size: 3
51749200 CAGAGAAGTG
*
51749210 GAA GAA GAA AAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
*
51749258 GAA AAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
51749306 GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA
51749324 CCTCACTAAT
Statistics
Matches: 107, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 107 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:51749841 original size:129 final size:130
Alignment explanation
Indices: 51749574--51749850 Score: 342
Period size: 129 Copynumber: 2.1 Consensus size: 130
51749564 TTCGAATTTA
* * *
51749574 AGAAGAAATTGTTCATGATCATAAATCAATGAACTTAGGCTATGATCGTAAATCAACGAACCTTA
1 AGAAGAAAATGTTCATGATCATAAATCAATGAACATAGGCTATGATCCTAAATCAACGAACCTTA
* ** *
51749639 ATAATAGCACTCATGATCGTAAATTAACAAGCTGGTTGGAGTTGCGATCGTAAATCAACTAACTT
66 ATAATAGCAATCATGATCGTAAACCAACAAGCTGGTTGAAGTTGCGATCGTAAATCAACTAACTT
* * * * * *
51749704 AGAAGAAAATGTTCATGATCGTAAATCAATGAACATAGGTTGTGATCCTAAAT-AGCGAGCCTTG
1 AGAAGAAAATGTTCATGATCATAAATCAATGAACATAGGCTATGATCCTAAATCAACGAACCTTA
* * * ** * * *
51749768 ATAATATCAATCGTGATTGTAAACCAATGAGTTGTTTGAAGTTGTGATCGTAAAT-AAGCTAACT
66 ATAATAGCAATCATGATCGTAAACCAACAAGCTGGTTGAAGTTGCGATCGTAAATCAA-CTAACT
51749832 T
130 T
51749833 AGAAGAAAATGTTCATGA
1 AGAAGAAAATGTTCATGA
51749851 CCGTTAATAA
Statistics
Matches: 125, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
128 2 0.02
129 76 0.61
130 47 0.38
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (130 bp):
AGAAGAAAATGTTCATGATCATAAATCAATGAACATAGGCTATGATCCTAAATCAACGAACCTTA
ATAATAGCAATCATGATCGTAAACCAACAAGCTGGTTGAAGTTGCGATCGTAAATCAACTAACTT
Found at i:51752295 original size:13 final size:13
Alignment explanation
Indices: 51752277--51752301 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51752267 TAACTAAAAC
51752277 AACACATAAATAA
1 AACACATAAATAA
51752290 AACACATAAATA
1 AACACATAAATA
51752302 TCATATAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (13 bp):
AACACATAAATAA
Found at i:51753048 original size:41 final size:41
Alignment explanation
Indices: 51752963--51753160 Score: 161
Period size: 41 Copynumber: 4.8 Consensus size: 41
51752953 AAACAATATT
* * * * * * *
51752963 ACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGTTTTAG-TAC
1 ACCGGCACTAAGCCTGCTAGACGTAAAGTCTGGTAT-GTTTC
* * * *
51753004 ACCGACACTTAGCCTGCTAGACATAAAGTCTGATATGTTTC
1 ACCGGCACTAAGCCTGCTAGACGTAAAGTCTGGTATGTTTC
*
51753045 ACCGGCAAC-AAGCCTGCTAGACGTAAAGTTTGGTATGTTTC
1 ACCGGC-ACTAAGCCTGCTAGACGTAAAGTCTGGTATGTTTC
* *
51753086 ACCGGCA-TCAAGCCTACTAGACGTAATGTCTGGTATGTTTC
1 ACCGGCACT-AAGCCTGCTAGACGTAAAGTCTGGTATGTTTC
* *
51753127 ATCGGCA-TCAAGCCTCCTGCTAGACGTAATGTCT
1 ACCGGCACT-AAG---CCTGCTAGACGTAAAGTCT
51753161 AGATTACTTC
Statistics
Matches: 133, Mismatches: 17, Indels: 11
0.83 0.11 0.07
Matches are distributed among these distances:
40 2 0.02
41 111 0.83
42 2 0.02
44 18 0.14
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.28
Consensus pattern (41 bp):
ACCGGCACTAAGCCTGCTAGACGTAAAGTCTGGTATGTTTC
Found at i:51758415 original size:28 final size:28
Alignment explanation
Indices: 51758377--51758516 Score: 165
Period size: 28 Copynumber: 5.0 Consensus size: 28
51758367 AAAATAGGAT
* *
51758377 AAAACTATAAAATCTGAAAAATAGTGTC
1 AAAACTGTAAAATCTGAAAAATAGTGGC
*
51758405 AAAACTGTAAAATCT-AAAAACCAGTGGC
1 AAAACTGTAAAATCTGAAAAA-TAGTGGC
* *
51758433 AAAACTGTAAAATCTAAAAAATAATGGC
1 AAAACTGTAAAATCTGAAAAATAGTGGC
* * *
51758461 AAAATTGTAAAATTTGAAAAAAAAGTGGC
1 AAAACTGTAAAATCTG-AAAAATAGTGGC
* *
51758490 AAAAGTGTAAAATCTGAAAAGTAGTGG
1 AAAACTGTAAAATCTGAAAAATAGTGG
51758517 ACACACGGTT
Statistics
Matches: 95, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
27 5 0.05
28 61 0.64
29 29 0.31
ACGTcount: A:0.53, C:0.09, G:0.16, T:0.22
Consensus pattern (28 bp):
AAAACTGTAAAATCTGAAAAATAGTGGC
Found at i:51758437 original size:56 final size:57
Alignment explanation
Indices: 51758377--51758516 Score: 183
Period size: 56 Copynumber: 2.5 Consensus size: 57
51758367 AAAATAGGAT
* * **
51758377 AAAACTATAAAATCTGAAAAATAGTGTCAAAACTGTAAAATCT-AAAAACCAGTGGC
1 AAAACTGTAAAATCTGAAAAATAGTGGCAAAACTGTAAAATCTGAAAAAAAAGTGGC
* * * *
51758433 AAAACTGTAAAATCTAAAAAATAATGGCAAAATTGTAAAATTTGAAAAAAAAGTGGC
1 AAAACTGTAAAATCTGAAAAATAGTGGCAAAACTGTAAAATCTGAAAAAAAAGTGGC
* *
51758490 AAAAGTGTAAAATCTGAAAAGTAGTGG
1 AAAACTGTAAAATCTGAAAAATAGTGG
51758517 ACACACGGTT
Statistics
Matches: 71, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
56 37 0.52
57 34 0.48
ACGTcount: A:0.53, C:0.09, G:0.16, T:0.22
Consensus pattern (57 bp):
AAAACTGTAAAATCTGAAAAATAGTGGCAAAACTGTAAAATCTGAAAAAAAAGTGGC
Found at i:51762185 original size:40 final size:39
Alignment explanation
Indices: 51762135--51762271 Score: 132
Period size: 40 Copynumber: 3.4 Consensus size: 39
51762125 TGGGCTTAGG
* *
51762135 TTTTTTGCGGCATTTTTCTAAAAAACGCCGCTAATGCTC-A
1 TTTTTAGCGGCATTTTTCT--AAAGCGCCGCTAATGCTCGA
* ** * *
51762175 TTTTTCGCGGCGCTTTCCTGGAAGCGCCGCTAATGCTCGA
1 TTTTTAGCGGCATTTTTCT-AAAGCGCCGCTAATGCTCGA
* * * *
51762215 TCTTTAGTGGCGTTTTACGTAAAGCGCCGCTAATGCTCGA
1 TTTTTAGCGGCATTTTTC-TAAAGCGCCGCTAATGCTCGA
51762255 TTTTTAGCGGCATTTTT
1 TTTTTAGCGGCATTTTT
51762272 TATCCAAATG
Statistics
Matches: 78, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
39 16 0.21
40 61 0.78
41 1 0.01
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.36
Consensus pattern (39 bp):
TTTTTAGCGGCATTTTTCTAAAGCGCCGCTAATGCTCGA
Found at i:51762203 original size:39 final size:40
Alignment explanation
Indices: 51762160--51762265 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
51762150 TTCTAAAAAA
* * *
51762160 CGCCGCTAATGCTC-ATTTTTCGCGGCGCTTT-CCTGGAAG
1 CGCCGCTAATGCTCGATTTTTAGCGGCGCTTTACGT-AAAG
* * *
51762199 CGCCGCTAATGCTCGATCTTTAGTGGCGTTTTACGTAAAG
1 CGCCGCTAATGCTCGATTTTTAGCGGCGCTTTACGTAAAG
51762239 CGCCGCTAATGCTCGATTTTTAGCGGC
1 CGCCGCTAATGCTCGATTTTTAGCGGC
51762266 ATTTTTTATC
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
39 14 0.25
40 41 0.72
41 2 0.04
ACGTcount: A:0.16, C:0.27, G:0.25, T:0.31
Consensus pattern (40 bp):
CGCCGCTAATGCTCGATTTTTAGCGGCGCTTTACGTAAAG
Found at i:51765935 original size:13 final size:15
Alignment explanation
Indices: 51765907--51765938 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
51765897 AGAATTATAA
51765907 AAAGAGAGAGACGGG
1 AAAGAGAGAGACGGG
51765922 AAAGAGA-AGA-GGG
1 AAAGAGAGAGACGGG
51765935 AAAG
1 AAAG
51765939 GAAATAAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 3 0.18
15 7 0.41
ACGTcount: A:0.53, C:0.03, G:0.44, T:0.00
Consensus pattern (15 bp):
AAAGAGAGAGACGGG
Found at i:51774270 original size:20 final size:21
Alignment explanation
Indices: 51774192--51774275 Score: 81
Period size: 20 Copynumber: 4.2 Consensus size: 21
51774182 AATTCAACAT
*
51774192 GTATCGATACCTATAC-TGAA
1 GTATCGATACCTTTACTTGAA
*
51774212 GTATCGACACCTTTACTAT-AA
1 GTATCGATACCTTTACT-TGAA
51774233 -TATCGATA-CTTTGA-TTGAA
1 GTATCGATACCTTT-ACTTGAA
*
51774252 GTATCGATACCTTT-CTTGAG
1 GTATCGATACCTTTACTTGAA
51774272 GTAT
1 GTAT
51774276 AAATATTTTA
Statistics
Matches: 53, Mismatches: 4, Indels: 14
0.75 0.06 0.20
Matches are distributed among these distances:
18 1 0.02
19 7 0.13
20 38 0.72
21 6 0.11
22 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (21 bp):
GTATCGATACCTTTACTTGAA
Found at i:51783910 original size:21 final size:22
Alignment explanation
Indices: 51783876--51783917 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
51783866 GGGGGAAAGT
51783876 GGGAAAGAGTAAAA-GTTTTGA
1 GGGAAAGAGTAAAAGGTTTTGA
51783897 GGGAAA-AGTAAAAAGGTTTTG
1 GGGAAAGAGT-AAAAGGTTTTG
51783918 GAGTTTGGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 3 0.16
21 10 0.53
22 6 0.32
ACGTcount: A:0.43, C:0.00, G:0.33, T:0.24
Consensus pattern (22 bp):
GGGAAAGAGTAAAAGGTTTTGA
Found at i:51783911 original size:29 final size:29
Alignment explanation
Indices: 51783853--51783911 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
51783843 GAGGGGAAGG
* **
51783853 GAGTAAAAGTTTTGGGGGAAAGTGGGAAA
1 GAGTAAAAGTTTTGGGGAAAAGTGAAAAA
51783882 GAGTAAAAGTTTTGAGGGAAAAGT-AAAAA
1 GAGTAAAAGTTTTG-GGGAAAAGTGAAAAA
51783911 G
1 G
51783912 GTTTTGGAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 18 0.69
30 8 0.31
ACGTcount: A:0.44, C:0.00, G:0.36, T:0.20
Consensus pattern (29 bp):
GAGTAAAAGTTTTGGGGAAAAGTGAAAAA
Found at i:51790944 original size:20 final size:21
Alignment explanation
Indices: 51790904--51790965 Score: 58
Period size: 20 Copynumber: 3.0 Consensus size: 21
51790894 TAATTTACTT
* *
51790904 AAAGCTTT-ACAATGTTGTAAG
1 AAAG-TTTAACAATCTTATAAG
51790925 AAAG-TTAACAATCTTATAAG
1 AAAGTTTAACAATCTTATAAG
* *
51790945 -AAGTTTAATAATGTTATAAG
1 AAAGTTTAACAATCTTATAAG
51790965 A
1 A
51790966 TATTCAAAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
19 5 0.15
20 25 0.74
21 4 0.12
ACGTcount: A:0.45, C:0.06, G:0.15, T:0.34
Consensus pattern (21 bp):
AAAGTTTAACAATCTTATAAG
Found at i:51791030 original size:20 final size:20
Alignment explanation
Indices: 51791005--51791065 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
51790995 ATAATAAAGC
51791005 TGTAAGAAATTTTGTAATTT
1 TGTAAGAAATTTTGTAATTT
* **
51791025 TGTAAGAGATTTAATAATTT
1 TGTAAGAAATTTTGTAATTT
*
51791045 TGTCA-AAATTTTAGTAATTT
1 TGTAAGAAATTTT-GTAATTT
51791065 T
1 T
51791066 TGTTGTAATG
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
19 5 0.15
20 28 0.85
ACGTcount: A:0.36, C:0.02, G:0.13, T:0.49
Consensus pattern (20 bp):
TGTAAGAAATTTTGTAATTT
Done.