Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 182 of 240
Found at i:56176113 original size:15 final size:14
Alignment explanation
Indices: 56176088--56176120 Score: 57
Period size: 15 Copynumber: 2.3 Consensus size: 14
56176078 GATTTAAGGT
56176088 TTAGGGGTTAGGGG
1 TTAGGGGTTAGGGG
56176102 TTAGGGGCTTAGGGG
1 TTAGGGG-TTAGGGG
56176117 TTAG
1 TTAG
56176121 ACATTATGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.15, C:0.03, G:0.52, T:0.30
Consensus pattern (14 bp):
TTAGGGGTTAGGGG
Found at i:56177329 original size:22 final size:22
Alignment explanation
Indices: 56177298--56177343 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
56177288 TATGTCCCAC
*
56177298 GCGCTGTTCTCATGGATCTGGA
1 GCGCTATTCTCATGGATCTGGA
56177320 GCGCTATTCTCATGGATCTGGA
1 GCGCTATTCTCATGGATCTGGA
56177342 GC
1 GC
56177344 CGGGCACTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.15, C:0.24, G:0.30, T:0.30
Consensus pattern (22 bp):
GCGCTATTCTCATGGATCTGGA
Found at i:56179980 original size:42 final size:42
Alignment explanation
Indices: 56179934--56180105 Score: 186
Period size: 43 Copynumber: 4.0 Consensus size: 42
56179924 TTTAATAAAA
* *
56179934 ATGCT-TTTAGTGGCGTTTTCTATAAAAGCGTCGCTAAAGGTC
1 ATGCTCTTTAGCGGCGTTTT-TATAAAAGCGCCGCTAAAGGTC
* * *
56179976 ATGCTTTTTAGCTGCGTTTGTGATAAAAGCGCCGCTAAAGGTC
1 ATGCTCTTTAGCGGCGTTT-TTATAAAAGCGCCGCTAAAGGTC
* * *
56180019 CTGTTCTTTAGCGGCGTTTTTGGGT-AAAGCGCCGCTAAAGGTC
1 ATGCTCTTTAGCGGCGTTTTT--ATAAAAGCGCCGCTAAAGGTC
* * * *
56180062 CTGTTCTTTAGCGGCGTTTTTTTCAAAGCGCCGCTAAAGGTC
1 ATGCTCTTTAGCGGCGTTTTTATAAAAGCGCCGCTAAAGGTC
56180104 AT
1 AT
56180106 AAAAACGCCG
Statistics
Matches: 113, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
41 1 0.01
42 25 0.22
43 85 0.75
44 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.34
Consensus pattern (42 bp):
ATGCTCTTTAGCGGCGTTTTTATAAAAGCGCCGCTAAAGGTC
Found at i:56183179 original size:3 final size:3
Alignment explanation
Indices: 56183173--56183199 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
56183163 TTTTTTTAAT
56183173 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
56183200 GCGTAAGTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:56183310 original size:23 final size:21
Alignment explanation
Indices: 56183284--56183327 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 21
56183274 TATCCTAGTT
56183284 TTTTATCAA-GTATTATTATTTAA
1 TTTTAT-AATGTATT-TT-TTTAA
56183307 TTTTATAATGTATTTTTTTAA
1 TTTTATAATGTATTTTTTTAA
56183328 AAAAATCCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 5 0.25
22 4 0.20
23 11 0.55
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (21 bp):
TTTTATAATGTATTTTTTTAA
Found at i:56196008 original size:15 final size:14
Alignment explanation
Indices: 56195988--56196054 Score: 57
Period size: 14 Copynumber: 4.9 Consensus size: 14
56195978 TCAGTGGAGC
**
56195988 AAAAAAAAAGGCAA
1 AAAAAAAAAACCAA
56196002 AAAAAAAAAACCAA
1 AAAAAAAAAACCAA
*
56196016 AAACAAAAAA--AA
1 AAAAAAAAAACCAA
* * *
56196028 AAAAAGAGAACAAA
1 AAAAAAAAAACCAA
56196042 AGAAAAAAAAACC
1 A-AAAAAAAAACC
56196055 TCTACTGGGG
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
12 9 0.22
14 24 0.59
15 8 0.20
ACGTcount: A:0.82, C:0.10, G:0.07, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAACCAA
Found at i:56196039 original size:19 final size:19
Alignment explanation
Indices: 56195988--56196052 Score: 66
Period size: 20 Copynumber: 3.5 Consensus size: 19
56195978 TCAGTGGAGC
56195988 AAAAAAAAAG-G--CAAAA
1 AAAAAAAAAGAGAACAAAA
*
56196004 AAAAAAAACCA-AAAACAAAA
1 AAAAAAAA--AGAGAACAAAA
56196024 AAAAAAAAAGAGAACAAAA
1 AAAAAAAAAGAGAACAAAA
56196043 GAAAAAAAAA
1 -AAAAAAAAA
56196053 CCTCTACTGG
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
16 8 0.20
18 2 0.05
19 8 0.20
20 22 0.55
ACGTcount: A:0.85, C:0.08, G:0.08, T:0.00
Consensus pattern (19 bp):
AAAAAAAAAGAGAACAAAA
Found at i:56196479 original size:10 final size:9
Alignment explanation
Indices: 56196455--56196492 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
56196445 AAACTCACTG
56196455 AAAAAAGAA
1 AAAAAAGAA
56196464 AAAAAAGAA
1 AAAAAAGAA
56196473 AATAAAAG-A
1 AA-AAAAGAA
*
56196482 ACAAAAGAA
1 AAAAAAGAA
56196491 AA
1 AA
56196493 GGAGGCCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
8 5 0.20
9 15 0.60
10 5 0.20
ACGTcount: A:0.84, C:0.03, G:0.11, T:0.03
Consensus pattern (9 bp):
AAAAAAGAA
Found at i:56197476 original size:86 final size:85
Alignment explanation
Indices: 56197359--56197720 Score: 393
Period size: 86 Copynumber: 4.3 Consensus size: 85
56197349 GTATTGGCGT
* * * * *** *
56197359 GAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATTGGTAAGAAGTGGATCGAAGAT-GCAGAT
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATTGGCGTGAAGTAGATCGAAGATAGCAGAT
* * *
56197423 CTTGTCTTCCCATACTGGTGG
66 CCTGTCTTCCTATA-TGGTAG
*
56197444 CGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGATTGGCGTGAAGTAGATCGAAGATAGCAG
1 -GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCAT-ATTGGCGTGAAGTAGATCGAAGATAGCAG
* *
56197509 GTCCTGTCTTCCTATATAGTAG
64 ATCCTGTCTTCCTATATGGTAG
*
56197531 G-A-TAGATTG-AG-AAGCA-ATCTTGTCTTCATGTATTGGCGT-AAGTAGATCGAAGATAGCAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCA--TATTGGCGTGAAGTAGATCGAAGATAGCAG
56197590 ATCCTGTCTTCCTATATGGTAG
64 ATCCTGTCTTCCTATATGGTAG
* * *
56197612 GAAGTGGATC-AGAGAAAGCAGATCTTGTCTTCATGTATGGCGTGAAGTAGATCGTAGATAGCAG
1 GAAGTAGATCGA-AGAAAGCAGATCTTGTCTTCATAT-TGGCGTGAAGTAGATCGAAGATAGCAG
* **
56197676 GTTTTGTCTTCCTATATGGTAG
64 ATCCTGTCTTCCTATATGGTAG
*
56197698 GAAGTGGA-CGAAGAAA-CAGATCT
1 GAAGTAGATCGAAGAAAGCAGATCT
56197721 ATCTCTCTGA
Statistics
Matches: 238, Mismatches: 25, Indels: 28
0.82 0.09 0.10
Matches are distributed among these distances:
81 53 0.22
82 13 0.05
83 7 0.03
84 17 0.07
85 18 0.08
86 89 0.37
87 24 0.10
88 17 0.07
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (85 bp):
GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATTGGCGTGAAGTAGATCGAAGATAGCAGAT
CCTGTCTTCCTATATGGTAG
Found at i:56197501 original size:43 final size:42
Alignment explanation
Indices: 56197330--56197720 Score: 250
Period size: 43 Copynumber: 9.2 Consensus size: 42
56197320 TGAAGTCATT
56197330 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGA
1 AAGCAGATCTTGTCTTCA--TATTGGCGTGAAGTAGATCGAAGA
* * * * *** *
56197374 TAGCAGGTCCTGTCTTCCTATTGGTAAGAAGTGGATCGAAG-
1 AAGCAGATCTTGTCTTCATATTGGCGTGAAGTAGATCGAAGA
* * * *
56197415 ATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
1 AAGCAGATCTTGTCTT--CATATTGG-CGTGAAGTAGATCGAAGA
*
56197460 AAACAGATCTTGTCTTCATGATTGGCGTGAAGTAGATCGAAGA
1 AAGCAGATCTTGTCTTCAT-ATTGGCGTGAAGTAGATCGAAGA
* * * * * * *
56197503 TAGCAGGTCCTGTCTTCCTATAT--AGT-AGGATAGATTG-AG-
1 AAGCAGATCTTGTCTTCATAT-TGGCGTGAAG-TAGATCGAAGA
56197542 AAGCA-ATCTTGTCTTCATGTATTGGCGT-AAGTAGATCGAAGA
1 AAGCAGATCTTGTCTTCA--TATTGGCGTGAAGTAGATCGAAGA
* * * * *
56197584 TAGCAGATCCTGTCTTCCTATATGGTAG-GAAGTGGATC-AGAGA
1 AAGCAGATCTTGTCTTCATAT-TGG-CGTGAAGTAGATCGA-AGA
* *
56197627 AAGCAGATCTTGTCTTCATGTATGGCGTGAAGTAGATCGTAGA
1 AAGCAGATCTTGTCTTCATAT-TGGCGTGAAGTAGATCGAAGA
* * * * * *
56197670 TAGCAGGTTTTGTCTTCCTATATGGTAG-GAAGTGGA-CGAAGA
1 AAGCAGATCTTGTCTTCATAT-TGG-CGTGAAGTAGATCGAAGA
56197712 AA-CAGATCT
1 AAGCAGATCT
56197721 ATCTCTCTGA
Statistics
Matches: 265, Mismatches: 61, Indels: 45
0.71 0.16 0.12
Matches are distributed among these distances:
38 9 0.03
39 5 0.02
40 13 0.05
41 34 0.13
42 36 0.14
43 122 0.46
44 32 0.12
45 14 0.05
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.29
Consensus pattern (42 bp):
AAGCAGATCTTGTCTTCATATTGGCGTGAAGTAGATCGAAGA
Found at i:56198459 original size:97 final size:97
Alignment explanation
Indices: 56198176--56198488 Score: 266
Period size: 97 Copynumber: 3.3 Consensus size: 97
56198166 CTCTCTGATA
* *
56198176 TGCAATTAAGAAGATTG-AAGCCGCAACGGCGAATCTTACTTTCCTGGCGATGCAGTGGATCAGA
1 TGCAATTTA-AAGATTGAAAGCCGCAACGGCG-ATCTTACTTTCTTGGCGATGCAGTGGATCAGA
*
56198240 TTGAA-CTACAAC-AGCAATC-TGTTCCCCG-CAT
64 -TGAAGCTACAACGAGCGATCTTGTTCCCCGACAT
* * * * *
56198271 TGCAA-TTAAAGA--GATGAGCC-CAACGG-TATCTCAC-TTCTCTGGC-AGTACAGTGCAGT-A
1 TGCAATTTAAAGATTGA-AAGCCGCAACGGCGATCTTACTTTCT-TGGCGA-TGCAGTGGA-TCA
* * * **
56198328 -ATTAAGCTACGACG-GTGATCTTGCTTCCTTGACAT
62 GATGAAGCTACAACGAGCGATCTTG-TTCCCCGACAT
*
56198363 TGCAATTTAAATATTGAAAGCCGCAACGGCGATCTTACTTTCTTGGCGATGCAGTGGATCAGATG
1 TGCAATTTAAAGATTGAAAGCCGCAACGGCGATCTTACTTTCTTGGCGATGCAGTGGATCAGATG
56198428 AAGCTACAACGA-CGGATCTTGTTCCCCGACAT
66 AAGCTACAACGAGC-GATCTTGTTCCCCGACAT
*
56198460 TGCAA-TTAATCAGATTG-AAGCCACAACGG
1 TGCAATTTAA--AGATTGAAAGCCGCAACGG
56198489 TGAATCTCAC
Statistics
Matches: 169, Mismatches: 26, Indels: 44
0.71 0.11 0.18
Matches are distributed among these distances:
88 3 0.02
89 15 0.09
90 20 0.12
91 7 0.04
92 14 0.08
93 14 0.08
94 6 0.04
95 14 0.08
96 22 0.13
97 42 0.25
98 12 0.07
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (97 bp):
TGCAATTTAAAGATTGAAAGCCGCAACGGCGATCTTACTTTCTTGGCGATGCAGTGGATCAGATG
AAGCTACAACGAGCGATCTTGTTCCCCGACAT
Found at i:56198813 original size:149 final size:155
Alignment explanation
Indices: 56198528--56199129 Score: 667
Period size: 149 Copynumber: 3.9 Consensus size: 155
56198518 AGATTTATCT
* * *
56198528 CCTAAGCAGCAGTGGAGCAGATCACATCAAGTCTTACTCCCTAAGCGTAGTGGAGCAGACAAAAG
1 CCTAAGCA-TAGTGGAGCA-ATCGCATCAAGTCTTA-TCCCTAAGCATAGTGGA-CAGAC---AG
* *
56198593 AAAC-CAGATCTTATCTCCCTAAGCAATAG-GGAGC--AT--C--CAAGTC-TAT-TCCTAAGCA
59 AACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCTAAGCA
56198648 ATAGTGGAGAGA-AGAACCA-AGGAT-TTATTC
124 ATAGTGGAGAGACAGAACCACA-GATCTTATTC
56198678 CCTAAGCATAGTGGAGC-ATCGGCATCAAGTCTTATCCCTAAG-ATAGTGGA-AGACA-AACCAC
1 CCTAAGCATAGTGGAGCAATC-GCATCAAGTCTTATCCCTAAGCATAGTGGACAGACAGAACCAC
56198739 AGATCTTATCTCCCTAAGCA-TAGTGGAGCAGATCGCATCAAGTCTTATCTCCTAAGCAATAGTG
65 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCTAAGCAATAGTG
*
56198803 GA-AGACAGAACCACA-ATCTTACTC
130 GAGAGACAGAACCACAGATCTTATTC
* *
56198827 CCTAAGCAGAGTGGAGCAGATCG-ATCAAGTCTTCTCCCTAAGCAATAGTGGACAGACAGAACCA
1 CCTAAGCATAGTGGAGCA-ATCGCATCAAGTCTTATCCCTAAGC-ATAGTGGACAGACAGAACCA
* * *
56198891 CAAATCTTATCTCCACTAAGCAGCAGTGGAGGCAGATCGCATC-ACTCTTATCTCTCTAAGCAAT
64 CAGATCTTATCTCC-CTAAGCAGTAGTGGA-GCAGATCGCATCAAGTCTTATCTC-CTAAGCAAT
56198955 AGTGGAGCAGACAGAA-CACAGATCTTATCTC
126 AGTGGAG-AGACAGAACCACAGATCTTAT-TC
56198986 CCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTTCCTAAGCAATAGTGGAGCAGACAGA
1 CCTAAGCA-TAGTGGAGCA-ATCGCATCAAGTCTTATC--CCTAAGC-ATAGTGGA-CAGACAGA
* * *
56199051 ACCACAGATCTTAT-TCCCCTAAGCAGTAGTGGAGTAGATCACATCCAGTCTTATCTCCCTAAGC
60 ACCACAGATCTTATCT-CCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCT-CCTAAGC
* *
56199115 AGTAGTAGAGCAGAC
123 AATAGTGGAG-AGAC
56199130 TAAAAACACA
Statistics
Matches: 396, Mismatches: 20, Indels: 59
0.83 0.04 0.12
Matches are distributed among these distances:
140 6 0.02
141 27 0.07
143 2 0.01
144 4 0.01
145 1 0.00
146 7 0.02
147 17 0.04
148 20 0.05
149 71 0.18
150 10 0.03
151 11 0.03
152 5 0.01
153 18 0.05
154 7 0.02
155 16 0.04
156 27 0.07
157 4 0.01
158 14 0.04
159 10 0.03
160 14 0.04
161 12 0.03
162 10 0.03
163 59 0.15
164 24 0.06
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.22
Consensus pattern (155 bp):
CCTAAGCATAGTGGAGCAATCGCATCAAGTCTTATCCCTAAGCATAGTGGACAGACAGAACCACA
GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCTAAGCAATAGTGG
AGAGACAGAACCACAGATCTTATTC
Found at i:56198953 original size:82 final size:80
Alignment explanation
Indices: 56198625--56199129 Score: 644
Period size: 82 Copynumber: 6.5 Consensus size: 80
56198615 GCAATAGGGA
*
56198625 GCATCCAAGTC-TAT-TCCTAAGCAATAGTGGAGAGA-AGAACCA-AGGAT-TTAT-TCCCTAAG
1 GCAT-CAAGTCTTATCTCCTAAGCAATAGTGGACAGACAGAACCACA-GATCTTATCTCCCTAAG
56198684 CA-TAGTGGAGC--ATC
64 CAGTAGTGGAGCAGATC
56198698 GGCATCAAGTCTTATC-CCTAAG--ATAGTGGA-AGACA-AACCACAGATCTTATCTCCCTAAGC
1 -GCATCAAGTCTTATCTCCTAAGCAATAGTGGACAGACAGAACCACAGATCTTATCTCCCTAAGC
56198758 A-TAGTGGAGCAGATC
65 AGTAGTGGAGCAGATC
56198773 GCATCAAGTCTTATCTCCTAAGCAATAGTGGA-AGACAGAACCACA-ATCTTA-CTCCCTAAGCA
1 GCATCAAGTCTTATCTCCTAAGCAATAGTGGACAGACAGAACCACAGATCTTATCTCCCTAAGCA
56198835 G-AGTGGAGCAGATC
66 GTAGTGGAGCAGATC
* *
56198849 G-ATCAAGTCTTCTC-CCTAAGCAATAGTGGACAGACAGAACCACAAATCTTATCTCCACTAAGC
1 GCATCAAGTCTTATCTCCTAAGCAATAGTGGACAGACAGAACCACAGATCTTATCTCC-CTAAGC
*
56198912 AGCAGTGGAGGCAGATC
65 AGTAGTGGA-GCAGATC
*
56198929 GCATC-ACTCTTATCTCTCTAAGCAATAGTGGAGCAGACAGAA-CACAGATCTTATCTCCCTAAG
1 GCATCAAGTCTTATCTC-CTAAGCAATAGTGGA-CAGACAGAACCACAGATCTTATCTCCCTAAG
56198992 CAGTAGTGGAGCAGATC
64 CAGTAGTGGAGCAGATC
56199009 GCATCAAGTCTTATCTTCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTAT-TCCCCTAA
1 GCATCAAGTCTTATC-TCCTAAGCAATAGTGGA-CAGACAGAACCACAGATCTTATCT-CCCTAA
*
56199073 GCAGTAGTGGAGTAGATC
63 GCAGTAGTGGAGCAGATC
* * * *
56199091 ACATCCAGTCTTATCTCCCTAAGCAGTAGTAGAGCAGAC
1 GCATCAAGTCTTATCT-CCTAAGCAATAGTGGA-CAGAC
56199130 TAAAAACACA
Statistics
Matches: 392, Mismatches: 11, Indels: 48
0.87 0.02 0.11
Matches are distributed among these distances:
71 11 0.03
72 14 0.04
73 25 0.06
74 44 0.11
75 34 0.09
76 31 0.08
77 23 0.06
78 15 0.04
79 6 0.02
80 27 0.07
81 53 0.14
82 100 0.26
83 9 0.02
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (80 bp):
GCATCAAGTCTTATCTCCTAAGCAATAGTGGACAGACAGAACCACAGATCTTATCTCCCTAAGCA
GTAGTGGAGCAGATC
Found at i:56198959 original size:40 final size:40
Alignment explanation
Indices: 56198672--56199128 Score: 340
Period size: 40 Copynumber: 11.7 Consensus size: 40
56198662 AACCAAGGAT
*
56198672 TTAT-TCCCTAAGC-ATAGTGGAGC--ATCGGCATCAAGTC
1 TTATCTCCCTAAGCAATAGTGGAGCAGATC-GCATCAAATC
* *
56198709 TTA--TCCCTAAG--ATAGTGGAAGACA-AAC-CA-CAGATC
1 TTATCTCCCTAAGCAATAGTGG-AG-CAGATCGCATCAAATC
*
56198744 TTATCTCCCTAAGC-ATAGTGGAGCAGATCGCATCAAGTC
1 TTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAATC
*
56198783 TTATCT-CCTAAGCAATAGTGGAAGACAGAAC-CA-C-AATC
1 TTATCTCCCTAAGCAATAGTGG-AG-CAGATCGCATCAAATC
* *
56198821 TTA-CTCCCTAAGC-AGAGTGGAGCAGATCG-ATCAAGTC
1 TTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAATC
*
56198858 -T-TCTCCCTAAGCAATAGTGGACAGACAGAAC-CA-CAAATC
1 TTATCTCCCTAAGCAATAGTGG--AG-CAGATCGCATCAAATC
** *
56198897 TTATCTCCACTAAGCAGCAGTGGAGGCAGATCGCATC-ACTC
1 TTATCTCC-CTAAGCAATAGTGGA-GCAGATCGCATCAAATC
* *
56198938 TTATCTCTCTAAGCAATAGTGGAGCAGA-CAGAACA-CAGATC
1 TTATCTCCCTAAGCAATAGTGGAGCAGATC-G--CATCAAATC
* *
56198979 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTC
1 TTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAATC
* * *
56199019 TTATCTTCCTAAGCAATAGTGGAGCAGA-CAGAACCACAGATC
1 TTATCTCCCTAAGCAATAGTGGAGCAGATC-GCATCA-A-ATC
* * * * *
56199061 TTAT-TCCCCTAAGCAGTAGTGGAGTAGATCACATCCAGTC
1 TTATCT-CCCTAAGCAATAGTGGAGCAGATCGCATCAAATC
* *
56199101 TTATCTCCCTAAGCAGTAGTAGAGCAGA
1 TTATCTCCCTAAGCAATAGTGGAGCAGA
56199129 CTAAAAACAC
Statistics
Matches: 338, Mismatches: 42, Indels: 77
0.74 0.09 0.17
Matches are distributed among these distances:
35 20 0.06
36 28 0.08
37 33 0.10
38 32 0.09
39 34 0.10
40 91 0.27
41 58 0.17
42 41 0.12
43 1 0.00
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (40 bp):
TTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAATC
Found at i:56200983 original size:19 final size:21
Alignment explanation
Indices: 56200959--56201001 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
56200949 GTATAAACTT
*
56200959 TTATTTTATT-T-GTTCAAAA
1 TTATTTTATTATCCTTCAAAA
56200978 TTA-TTTATTATCCTTCAAAA
1 TTATTTTATTATCCTTCAAAA
56200998 TTAT
1 TTAT
56201002 CCTACATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
18 6 0.30
19 4 0.20
20 10 0.50
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.56
Consensus pattern (21 bp):
TTATTTTATTATCCTTCAAAA
Found at i:56203111 original size:60 final size:60
Alignment explanation
Indices: 56202983--56203154 Score: 228
Period size: 58 Copynumber: 2.9 Consensus size: 60
56202973 TTTTTGCATT
* *
56202983 ATGCA-CAACATTACATTTCATCGCA-GCAATAAATTTCT-AAATCCAAAAATACCATTC
1 ATGCATCAACATTACATTTCATTGCATGCAATAAATTTCTAAAATCCAAAAATACGATTC
*
56203040 ATGCATCAACATTAAATTTCATTGCATGCAATAAATTTCTTAAAATCCAAAAATACGA-TC
1 ATGCATCAACATTACATTTCATTGCATGCAATAAATTTC-TAAAATCCAAAAATACGATTC
* * * * *
56203100 ATGCATCAACATTACGTTTCATTGCATACAGT-AATTCCTAAAATCCAAAAGTACG
1 ATGCATCAACATTACATTTCATTGCATGCAATAAATTTCTAAAATCCAAAAATACG
56203155 TCAGTTAGAA
Statistics
Matches: 102, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
57 5 0.05
58 34 0.33
59 17 0.17
60 31 0.30
61 15 0.15
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.30
Consensus pattern (60 bp):
ATGCATCAACATTACATTTCATTGCATGCAATAAATTTCTAAAATCCAAAAATACGATTC
Found at i:56204880 original size:20 final size:19
Alignment explanation
Indices: 56204857--56204895 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
56204847 TTCACTTGAA
56204857 AAAGAAATA-AAAAAGAAAAG
1 AAAGAAA-ACAAAAA-AAAAG
56204877 AAAGAAAACAAAAAAAAAG
1 AAAGAAAACAAAAAAAAAG
56204896 GAAGCAAGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.82, C:0.03, G:0.13, T:0.03
Consensus pattern (19 bp):
AAAGAAAACAAAAAAAAAG
Found at i:56206001 original size:42 final size:42
Alignment explanation
Indices: 56205844--56206160 Score: 182
Period size: 42 Copynumber: 7.9 Consensus size: 42
56205834 TTGAAGTCAT
56205844 AAAGCAGATCTGTCTTCATGTATTGGCGTGAA-TAGATCGAAG
1 AAAGCAGATCTGTCTTCATGTA-TGGCGTGAAGTAGATCGAAG
* * * * *** *
56205886 ATAGCAG-TCTGTCTTCCTATATTGTAAGAAGTGGATCGAAG
1 AAAGCAGATCTGTCTTCATGTATGGCGTGAAGTAGATCGAAG
* * * *
56205927 -ATGCA-ATCTTGTCTCCCA--TACTGGTGGCGAAGTAGATCGAAG
1 AAAGCAGATC-TGTCT-TCATGTA-TGG-CGTGAAGTAGATCGAAG
*
56205969 AAAACAGATCTGTCTTCATGTATGGCGTGAAGTAGATCGAAG
1 AAAGCAGATCTGTCTTCATGTATGGCGTGAAGTAGATCGAAG
* * * * * *
56206011 ATAGCAGGTCCTGTCTTCCTATATAGAG-GAA-T-GAT-G-A-
1 AAAGCAGAT-CTGTCTTCATGTATGGCGTGAAGTAGATCGAAG
56206048 AAA-CAGATCT-TGC-TCATG-ATGGCGTGAAGTAGATCGAAG
1 AAAGCAGATCTGT-CTTCATGTATGGCGTGAAGTAGATCGAAG
*
56206087 ATAGCAGATCCTGTCTTCCA--TAT-G-GTAGAAG--GATCGAA-
1 AAAGCAGAT-CTGTCTT-CATGTATGGCGT-GAAGTAGATCGAAG
56206125 AAAGCAGATCTGTCTTCATG-AT-GCGTGAAG-AGATCG
1 AAAGCAGATCTGTCTTCATGTATGGCGTGAAGTAGATCG
56206161 TAGATTAGCA
Statistics
Matches: 209, Mismatches: 37, Indels: 62
0.68 0.12 0.20
Matches are distributed among these distances:
33 4 0.02
34 7 0.03
35 4 0.02
36 9 0.04
37 17 0.08
38 17 0.08
39 10 0.05
40 22 0.11
41 37 0.18
42 50 0.24
43 27 0.13
44 5 0.02
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (42 bp):
AAAGCAGATCTGTCTTCATGTATGGCGTGAAGTAGATCGAAG
Found at i:56206170 original size:78 final size:79
Alignment explanation
Indices: 56205969--56206170 Score: 267
Period size: 76 Copynumber: 2.6 Consensus size: 79
56205959 TAGATCGAAG
*
56205969 AAAACAGATCTGTCTTCATGTATGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATA
1 AAAACAGATCTGTCTTCATG-ATGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATA
*
56206034 TAGAGGAATGAT-G-
65 TAGAGGAAGGATCGA
56206047 AAAACAGATCT-TGC-TCATGATGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCC-ATA
1 AAAACAGATCTGT-CTTCATGATGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATA
*
56206109 TGGTA-GAAGGATCGA
65 TAG-AGGAAGGATCGA
*
56206124 AAAAGCAGATCTGTCTTCATGAT-GCGTGAAG-AGATCGTAGATTAGCA
1 AAAA-CAGATCTGTCTTCATGATGGCGTGAAGTAGATCGAAGA-TAGCA
56206171 TCGCTCCATA
Statistics
Matches: 112, Mismatches: 4, Indels: 16
0.85 0.03 0.12
Matches are distributed among these distances:
75 11 0.10
76 41 0.37
77 19 0.17
78 33 0.29
79 8 0.07
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (79 bp):
AAAACAGATCTGTCTTCATGATGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATAT
AGAGGAAGGATCGA
Found at i:56206727 original size:50 final size:49
Alignment explanation
Indices: 56206479--56206998 Score: 206
Period size: 50 Copynumber: 10.6 Consensus size: 49
56206469 GCAATTAAGA
* * *
56206479 AGATTGAAGCCGCAACGACGAATC-TACTTTCCT-GCGA-TGCAGTGGATC
1 AGATTGAAGCCACAACGGCGAATCTTAC-TTCCTGGC-ATTGCAGTGGAAC
* * * * * * ** *
56206527 AGATTGAAGCTACAAC-GTGAATCTT-GTTCCCCGACATTGCAATTAAAG
1 AGATTGAAGCCACAACGGCGAATCTTACTT-CCTGGCATTGCAGTGGAAC
* * * * * *
56206575 AGATTGAAGCCACAATGGCAAATC-TACTT-TTTGCA--GACAGTAGAGC
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCTGGCATTG-CAGTGGAAC
* * * * ** * * *
56206621 AGA-TAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCAAT-TAAGA
1 AGATTGAAGCCACAACGGCGAATCTTACTTC-CTGGCATTGCAGTGGAA-C
* * *
56206670 AGATTGAAGCCGCAACGGTGAATCTTACTTTCCTGGCGA-TGCAGTGGATC
1 AGATTGAAGCCACAACGGCGAATCTTAC-TTCCTGGC-ATTGCAGTGGAAC
* * ** * * * * ** *
56206720 AGATTGAAGCTACAACGGCAAATCTTGGTCCCCGACATTGCAATTAAAG
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCTGGCATTGCAGTGGAAC
* * * * *
56206769 AGATTGAAGCCACAACGGCGAATCTCACTTCTCTGGCAGTACAGTGCAGC
1 AGATTGAAGCCACAACGGCGAATCTTACTTC-CTGGCATTGCAGTGGAAC
* * * * * ** * ** *
56206819 AGATTAAAGCTACGACGGTGAATCTTGCTTCCTTGATATTGCAATTTAAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCC-TGGCATTGCAGTGGAAC
* * *
56206869 AGATTGAAGCCGCAACGGCGAATCTTACTTTCTTGGCGA-TGCAGTGGATC
1 AGATTGAAGCCACAACGGCGAATCTTAC-TTCCTGGC-ATTGCAGTGGAAC
* * * * * *
56206919 AGATTGAAGCTACAACGGCGAATCTT-GTTCCCCGACATTGCAAT-TAATC
1 AGATTGAAGCCACAACGGCGAATCTTACTT-CCTGGCATTGCAGTGGAA-C
*
56206968 AGATTGAAGCCACAACGGCGAATCTCACTTC
1 AGATTGAAGCCACAACGGCGAATCTTACTTC
56206999 TCTAGCAGAC
Statistics
Matches: 324, Mismatches: 122, Indels: 51
0.65 0.25 0.10
Matches are distributed among these distances:
45 16 0.05
46 13 0.04
47 10 0.03
48 45 0.14
49 84 0.26
50 147 0.45
51 9 0.03
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (49 bp):
AGATTGAAGCCACAACGGCGAATCTTACTTCCTGGCATTGCAGTGGAAC
Found at i:56206773 original size:99 final size:98
Alignment explanation
Indices: 56206311--56206997 Score: 658
Period size: 99 Copynumber: 7.2 Consensus size: 98
56206301 GATGAAGTCG
*
56206311 AACGGCGAATCTTAC-TTCCTGGCAATGCA--GGA-CAGA-TGAAGCTACAATGGCGAA-C-TGT
1 AACGGCGAATCTTACTTTCCTGGC-ATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTGT
56206369 T-CCCGACA--GCAA-TAAA-AGATTGAAG-CAC
65 TCCCCGACATTGCAATTAAAGAGATTGAAGCCAC
* * * * * * *
56206397 AACGGCGAATCTCACTTT-TTGGCAGTACAGTAGAGCAGA-TAAAGCTACGACGGCGAATC-TGC
1 AACGGCGAATCTTACTTTCCTGGCA-TGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTGT
* * * *
56206459 TCTCTGATA-TGCAATT-AAGAAGATTGAAGCCGC
65 TCCCCGACATTGCAATTAAAG-AGATTGAAGCCAC
* * *
56206492 AACGACGAATC-TACTTTCCT-GCGATGCAGTGGATCAGATTGAAGCTACAAC-GTGAATCTTGT
1 AACGGCGAATCTTACTTTCCTGGC-ATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTGT
56206554 TCCCCGACATTGCAATTAAAGAGATTGAAGCCAC
65 TCCCCGACATTGCAATTAAAGAGATTGAAGCCAC
* * * * * *
56206588 AATGGCAAATC-TACTTT--TTGCA-GACAGTAGAGCAGA-TAAAGCTACGACGGCGAATCTTGC
1 AACGGCGAATCTTACTTTCCTGGCATG-CAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTG-
* * * *
56206648 TTCTCTGATATTGCAATT-AAGAAGATTGAAGCCGC
64 TTCCCCGACATTGCAATTAAAG-AGATTGAAGCCAC
* * * *
56206683 AACGGTGAATCTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCAAATCTTGG
1 AACGGCGAATCTTACTTTCCTGGC-ATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTGT
56206748 TCCCCGACATTGCAATTAAAGAGATTGAAGCCAC
65 TCCCCGACATTGCAATTAAAGAGATTGAAGCCAC
* * * * * *
56206782 AACGGCGAATCTCAC-TTCTCTGGCAGTACAGTGCAGCAGATTAAAGCTACGACGGTGAATCTTG
1 AACGGCGAATCTTACTTTC-CTGGCA-TGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTG
** * *
56206846 CTTCCTTGATATTGCAATTTAAA-AGATTGAAGCCGC
64 -TTCCCCGACATTGCAA-TTAAAGAGATTGAAGCCAC
* *
56206882 AACGGCGAATCTTACTTTCTTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTGT
1 AACGGCGAATCTTACTTTCCTGGC-ATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTGT
**
56206947 TCCCCGACATTGCAATTAATCAGATTGAAGCCAC
65 TCCCCGACATTGCAATTAAAGAGATTGAAGCCAC
*
56206981 AACGGCGAATCTCACTT
1 AACGGCGAATCTTACTT
56206998 CTCTAGCAGA
Statistics
Matches: 484, Mismatches: 80, Indels: 61
0.77 0.13 0.10
Matches are distributed among these distances:
85 1 0.00
86 21 0.04
87 2 0.00
88 2 0.00
89 19 0.04
90 4 0.01
91 4 0.01
92 6 0.01
93 12 0.02
94 57 0.12
95 69 0.14
96 39 0.08
97 3 0.01
98 11 0.02
99 127 0.26
100 98 0.20
101 9 0.02
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.24
Consensus pattern (98 bp):
AACGGCGAATCTTACTTTCCTGGCATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTGTT
CCCCGACATTGCAATTAAAGAGATTGAAGCCAC
Found at i:56206874 original size:199 final size:194
Alignment explanation
Indices: 56206261--56207010 Score: 1018
Period size: 199 Copynumber: 4.0 Consensus size: 194
56206251 CATGGACAAT
*
56206261 TAAAGCTAC-AC-GC-AATCTGCTTC-CTGATA-GCAATTAAGAAGA-TGAAGTCG-AACGGCGA
1 TAAAGCTACGACGGCGAATCTGCTTCTCTGATATGCAATTAAGAAGATTGAAGCCGCAACGGCGA
* * *
56206319 ATCTTAC-TTCCTGGCAATGCA--GGA-CAGA-TGAAGCTACAATGGCGAA-C-T-GTTCCCGAC
66 ATCTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTGGTCCCCGAC
*
56206376 A--GCAA-TAAA-AGATTGAAG-CACAACGGCGAATCTCACTTTTTGGCAGTACAGTAGAGCAGA
131 ATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCACTTTCTGGCAG-ACAGTAGAGCAGA
*
56206436 TAAAGCTACGACGGCGAATCTGC-TCTCTGATATGCAATTAAGAAGATTGAAGCCGCAACGACGA
1 TAAAGCTACGACGGCGAATCTGCTTCTCTGATATGCAATTAAGAAGATTGAAGCCGCAACGGCGA
* *
56206500 ATC-TACTTTCCT-GCGATGCAGTGGATCAGATTGAAGCTACAAC-GTGAATCTTGTTCCCCGAC
66 ATCTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTGGTCCCCGAC
* * *
56206562 ATTGCAATTAAAGAGATTGAAGCCACAATGGCAAATCT-ACTTT-TTGCAGACAGTAGAGCAGA
131 ATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCACTTTCTGGCAGACAGTAGAGCAGA
*
56206624 TAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCAATTAAGAAGATTGAAGCCGCAACGGT
1 TAAAGCTACGACGGCGAATC-TGCTTCTCTGATA-TGCAATTAAGAAGATTGAAGCCGCAACGGC
*
56206689 GAATCTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCAAATCTTGGTCCCCG
64 GAATCTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTGGTCCCCG
56206754 ACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCACTTCTCTGGCAGTACAGT-GCAG
129 ACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCACTT-TCTGGCAG-ACAGTAG-AG
56206818 CAGA
191 CAGA
*
56206822 TTAAAGCTACGACGGTGAATCTTGCTTC-CTTGATATTGCAATTTAA-AAGATTGAAGCCGCAAC
1 -TAAAGCTACGACGGCGAATC-TGCTTCTC-TGATA-TGCAA-TTAAGAAGATTGAAGCCGCAAC
* *
56206885 GGCGAATCTTACTTTCTTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTGTTCC
61 GGCGAATCTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTGGTCC
** *
56206950 CCGACATTGCAATTAATCAGATTGAAGCCACAACGGCGAATCTCACTTCTCTAGCAGACAG
126 CCGACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCACTT-TCTGGCAGACAG
56207011 AAACCAGATC
Statistics
Matches: 515, Mismatches: 26, Indels: 45
0.88 0.04 0.08
Matches are distributed among these distances:
175 9 0.02
176 2 0.00
177 4 0.01
178 13 0.03
179 13 0.03
180 17 0.03
181 15 0.03
182 3 0.01
183 8 0.02
184 12 0.02
185 1 0.00
186 8 0.02
188 37 0.07
189 12 0.02
190 23 0.04
191 46 0.09
192 9 0.02
193 31 0.06
194 52 0.10
195 4 0.01
196 1 0.00
197 6 0.01
198 16 0.03
199 169 0.33
200 4 0.01
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.24
Consensus pattern (194 bp):
TAAAGCTACGACGGCGAATCTGCTTCTCTGATATGCAATTAAGAAGATTGAAGCCGCAACGGCGA
ATCTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTGGTCCCCGAC
ATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCACTTTCTGGCAGACAGTAGAGCAGA
Found at i:56207148 original size:82 final size:81
Alignment explanation
Indices: 56207019--56207862 Score: 1062
Period size: 82 Copynumber: 10.4 Consensus size: 81
56207009 AGAAACCAGA
* * * *
56207019 TCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCA-CATCA-AG-TCTTATCTCCCTAAGCAGTAGT
1 TCTTA-CTCCCTAAGCAATAGTGGAGCA-GACAGAACCACAGATCTTATCTCCCTAAGCAGTAGT
* * *
56207081 GGAGCAGA-CAAAAGAAACCAG
64 GGAGCAGATC----GCATCAAG
* * * *
56207102 ATCTTA-TCCCTAAGCAATAGTGGAGCAGATC-GCATCA-AG-TCGTATCTCCCTAAGCAATAGT
1 -TCTTACTCCCTAAGCAATAGTGGAGCAGA-CAGAACCACAGATCTTATCTCCCTAAGCAGTAGT
* *
56207163 GGAGCAGA-C-AAACTACAG
64 GGAGCAGATCGCATC-A-AG
* * * *
56207181 ATC-TATCTCCCTAAGCAATAGT-GAGCAGATC-GCATCA-AG-TCTTACCTCCCTAAGCAATAG
1 -TCTTA-CTCCCTAAGCAATAGTGGAGCAGA-CAGAACCACAGATCTTATCTCCCTAAGCAGTAG
* *
56207241 TGGAGCAGA-CAGAACCACAG
63 TGGAGCAGATC-GCATCA-AG
*
56207261 ATCTTACTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATC-TATCTCCCTAAGCAATAGTG
1 -TCTTACTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
56207325 GAGCAGATCGCATCAAG
65 GAGCAGATCGCATCAAG
56207342 TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATC-TATCTCCCTAAGCAGTAGTG
1 TCTTA-CTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
56207406 GAGCAGATCGCATCAAG
65 GAGCAGATCGCATCAAG
* * *
56207423 TCTTATCTCCCTAAGCAATAGTGGAACAGATAGAACCACAGATCTTATCTCCCTAAGCAATAGTG
1 TCTTA-CTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
* *
56207488 GAGCAGATCGTAGCAAG
65 GAGCAGATCGCATCAAG
56207505 TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
1 TCTTA-CTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
56207570 GAGCAGATCGCATCAAG
65 GAGCAGATCGCATCAAG
*
56207587 TCTTACCTCCCTAAGCAATAGTGGAGCAGACAGAACCACGGATCTTATCTCCCTAAGCAGTAGTG
1 TCTTA-CTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
56207652 GAGCAGATCGCATCAAG
65 GAGCAGATCGCATCAAG
56207669 TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
1 TCTTA-CTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
56207734 GAGCAGATCGCATCAAG
65 GAGCAGATCGCATCAAG
56207751 TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTAT-TCCCCTAAGCAGTAGT
1 TCTTA-CTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCT-CCCTAAGCAGTAGT
* * *
56207815 GGAGTAGATCACATCCAG
64 GGAGCAGATCGCATCAAG
*
56207833 TCTTATCTCCCT-AGCAGTAGTGGAGCAGAC
1 TCTTA-CTCCCTAAGCAATAGTGGAGCAGAC
56207863 TAAAAACACA
Statistics
Matches: 711, Mismatches: 32, Indels: 37
0.91 0.04 0.05
Matches are distributed among these distances:
77 4 0.01
78 2 0.00
79 51 0.07
80 44 0.06
81 153 0.22
82 449 0.63
83 3 0.00
84 5 0.01
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.22
Consensus pattern (81 bp):
TCTTACTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTGG
AGCAGATCGCATCAAG
Found at i:56207352 original size:122 final size:124
Alignment explanation
Indices: 56207002--56207862 Score: 1001
Period size: 122 Copynumber: 7.1 Consensus size: 124
56206992 TCACTTCTCT
* * * * *
56207002 AGCAGACAGAAAC-CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCA-CATCA-AG-TCTT
1 AGCAGACAGAACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCA-GACAGAACCACAGATCTT
* * * *
56207063 ATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAAGAAACCAGATCTTA--TCCCTAAGCAATAGTGG
65 ATCTCCCTAAGCAATAGTGGAGCAGATC----GCATCAAG-TCTTATCTCCCTAAGCAATAGTGG
* * * *
56207125 AGCAGATC-GCATCA-AG-TCGTATCTCCCTAAGCAATAGTGGAGCAGACA-AACTACAGATC-T
1 AGCAGA-CAGAACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTT
*
56207185 ATCTCCCTAAGCAATAGT-GAGCAGATCGCATCAAGTCTTACCTCCCTAAGCAATAGTGG
65 ATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAATAGTGG
56207244 AGCAGACAGAACCACAGATCTTA-CTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATC-TA
1 AGCAGACAGAACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTA
56207307 TCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAATAGTGG
66 TCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAATAGTGG
* * *
56207366 AGCAGACAGAACCACAGATC-TATCTCCCTAAGCAGTAGTGGAGCAGATC-GCATCA-AG-TCTT
1 AGCAGACAGAACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGA-CAGAACCACAGATCTT
* * * *
56207427 ATCTCCCTAAGCAATAGTGGAACAGATAGAACCACAGATCTTATCTCCCTAAGCAATAGTGG
65 ATCTCCCTAAGCAATAGTGGAGCAGATCGCATCA-AG-TCTTATCTCCCTAAGCAATAGTGG
* *
56207489 AGCAGATC-GTAGCA-AG-TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTT
1 AGCAGA-CAGAACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTT
* *
56207551 ATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTACCTCCCTAAGCAATAGTGG
65 ATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAATAGTGG
* * * *
56207611 AGCAGACAGAACCACGGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-GCATCA-AG-TCTT
1 AGCAGACAGAACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGA-CAGAACCACAGATCTT
* * *
56207673 ATCTCCCTAAGCAATAGTGGAGCAGA-CAGAACCACAGATCTTATCTCCCTAAGCAGTAGTGG
65 ATCTCCCTAAGCAATAGTGGAGCAGATC-GCATCA-AG-TCTTATCTCCCTAAGCAATAGTGG
* *
56207735 AGCAGATC-GCATCA-AG-TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTT
1 AGCAGA-CAGAACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTT
* * * * *
56207797 AT-TCCCCTAAGCAGTAGTGGAGTAGATCACATCCAGTCTTATCTCCCT-AGCAGTAGTGG
65 ATCT-CCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAATAGTGG
56207856 AGCAGAC
1 AGCAGAC
56207863 TAAAAACACA
Statistics
Matches: 645, Mismatches: 58, Indels: 73
0.83 0.07 0.09
Matches are distributed among these distances:
117 5 0.01
118 6 0.01
119 27 0.04
120 31 0.05
121 103 0.16
122 279 0.43
123 63 0.10
124 128 0.20
125 3 0.00
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (124 bp):
AGCAGACAGAACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTA
TCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAATAGTGG
Found at i:56213039 original size:26 final size:26
Alignment explanation
Indices: 56213001--56213079 Score: 97
Period size: 26 Copynumber: 3.1 Consensus size: 26
56212991 TTTTAAAGTA
**
56213001 AATA-GCACAACAATTTAAGGTAAAT
1 AATATGCACAACAATTTAAAATAAAT
* * *
56213026 AATATGCAAAACAAATTAAAATGAAT
1 AATATGCACAACAATTTAAAATAAAT
*
56213052 AATATACACAACAATTTAAAATAAAT
1 AATATGCACAACAATTTAAAATAAAT
56213078 AA
1 AA
56213080 CCTCCATGAC
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
25 4 0.09
26 40 0.91
ACGTcount: A:0.59, C:0.10, G:0.06, T:0.24
Consensus pattern (26 bp):
AATATGCACAACAATTTAAAATAAAT
Found at i:56213270 original size:5 final size:5
Alignment explanation
Indices: 56213260--56213294 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
56213250 ATTACAAGAA
56213260 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
56213295 GAAGGGCCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:56214515 original size:44 final size:45
Alignment explanation
Indices: 56214467--56214730 Score: 159
Period size: 44 Copynumber: 6.0 Consensus size: 45
56214457 GATTCATCAT
* * *
56214467 TTTAATCTGTTCCAGTGCAACTTCAGGGAGAT-AGGATTAGA-AAC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAAG-TTAGATAAC
* * * *
56214511 TTTAACCTGCTCCACTGTAACTTCAGAGAGATAAAGTTAGATATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAAGTTAGATAAC
* * * *
56214556 TTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGACTT-G-TAGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAA-AGTTAGATAAC
* * * * * * *
56214600 TTCAATCTGC-CCTATTGCAAATTTAGGGGGAT-AAGATTTG-TATC
1 TTTAATCTGCTCC-ACTGCAACTTCAGGGAGATAAAG-TTAGATAAC
* * * * * *
56214644 TTCAGTTTACTCCACTACAACTTCAGGGAGATAAGACTT-G-TAAC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAA-AGTTAGATAAC
* * * * *
56214688 TTCAACCTGCTCCACTACAACTTCAGGGAGATAATGTTTGATA
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAAGTTAGATA
56214731 TGATACGCTC
Statistics
Matches: 174, Mismatches: 35, Indels: 21
0.76 0.15 0.09
Matches are distributed among these distances:
42 1 0.01
43 7 0.04
44 121 0.70
45 41 0.24
46 4 0.02
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (45 bp):
TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAAGTTAGATAAC
Found at i:56214843 original size:45 final size:44
Alignment explanation
Indices: 56214790--56215128 Score: 187
Period size: 44 Copynumber: 7.6 Consensus size: 44
56214780 TTCAATTTGT
* * *
56214790 TCCACTGCAACTTCAGGGACATAAGATTTGCTATCTTCAGTCTAC
1 TCCACTGCAACTTCAGGGAGATAAGACTTG-TATCTTCAATCTAC
* *
56214835 TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCTAC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTCAATCTAC
* * * * *
56214879 -CCTAGTGAAACTTCAGGG-GAATAAGA-TTGGTGA-CTTTAACCTGC
1 TCC-ACTGCAACTTCAGGGAG-ATAAGACTT-GT-ATCTTCAATCTAC
* * * *
56214923 TCCACTACAAATTCAGGGAGATAAG-GTCTGTAAT-TTAGCCTTAATCTAT
1 TCCACTGCAACTTCAGGGAGATAAGACT-TGT-ATCTT---C--AATCTAC
* * * *
56214972 TCCACTGCAACTTCAGGGAAATGAGACTTGCTATCTTCAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTG-TATCTTCAATCTAC
* * * *
56215017 TCCACTTCATCTTCAGGGAGATCAA-ACTTGTAACTGCAATCTAC
1 TCCACTGCAACTTCAGGGAGAT-AAGACTTGTATCTTCAATCTAC
* ** * *
56215061 CCCACTATAACTTCAGGG-GGTAAGA-TTAGTGA-CTT-AATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTT-GT-ATCTTCAATCTAC
* * *
56215103 TTCGCTGCAACTTTAGGGAGATAAGA
1 TCCACTGCAACTTCAGGGAGATAAGA
56215129 TTTGCCATAA
Statistics
Matches: 224, Mismatches: 48, Indels: 46
0.70 0.15 0.14
Matches are distributed among these distances:
42 22 0.10
43 18 0.08
44 88 0.39
45 61 0.27
46 1 0.00
47 1 0.00
49 29 0.13
50 4 0.02
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTCAATCTAC
Found at i:56215022 original size:182 final size:180
Alignment explanation
Indices: 56214630--56215127 Score: 489
Period size: 182 Copynumber: 2.8 Consensus size: 180
56214620 ATTTAGGGGG
* * * *
56214630 ATAAGATTTG-TATCTTCAGTTTACTCCACTACAACTTCAGGGAGAT-AAGACTTGTAACTTCAA
1 ATAAGACTTGCTATCTTCAGTCTACTCCACTGCAACTTCAGGGAGATCAA-ACTTGTAACTGCAA
* * * * *
56214693 CCTGCTCCACTACAACTTCAGGGAGATAATG-TT--TGA-TATGATA-C-GCTCTACTA-AAACT
65 TCTACCCCACTATAACTTCAGGG-GATAA-GATTAGTGACT-T-A-ACCTGCTCCACTACAAA-T
** * * * * *
56214751 TCAAAGATATAAGATCTGTAATTTATAG-CTTCAATTTGTTCCACTGCAACTTCAGGGAC
124 TCAGGGAGATAAGGTCTGTAA-TT-TAGCCTT-AATCTATTCCACTGCAACTTCAGGGAA
* **
56214810 ATAAGATTTGCTATCTTCAGTCTACTCCACTGCAACTTCAGGGAGAT-AAGACTTGTAACTTTAA
1 ATAAGACTTGCTATCTTCAGTCTACTCCACTGCAACTTCAGGGAGATCAA-ACTTGTAACTGCAA
* * *
56214874 TCTACCCTAGTGA-AACTTCAGGGGAATAAGATTGGTGACTTTAACCTGCTCCACTACAAATTCA
65 TCTACCCCACT-ATAACTTCAGGGG-ATAAGATTAGTGAC-TTAACCTGCTCCACTACAAATTCA
56214938 GGGAGATAAGGTCTGTAATTTAGCCTTAATCTATTCCACTGCAACTTCAGGGAA
127 GGGAGATAAGGTCTGTAATTTAGCCTTAATCTATTCCACTGCAACTTCAGGGAA
* * * *
56214992 ATGAGACTTGCTATCTTCAGTCTGCTCCACTTCATCTTCAGGGAGATCAAACTTGTAACTGCAAT
1 ATAAGACTTGCTATCTTCAGTCTACTCCACTGCAACTTCAGGGAGATCAAACTTGTAACTGCAAT
* * * * * * *
56215057 CTACCCCACTATAACTTCAGGGGGTAAGATTAGTGACTTAATCTGCTTCGCTGCAACTTTAGGGA
66 CTACCCCACTATAACTTCAGGGGATAAGATTAGTGACTTAACCTGCTCCACTACAAATTCAGGGA
56215122 GATAAG
131 GATAAG
56215128 ATTTGCCATA
Statistics
Matches: 271, Mismatches: 33, Indels: 28
0.82 0.10 0.08
Matches are distributed among these distances:
180 40 0.15
181 85 0.31
182 103 0.38
183 12 0.04
184 27 0.10
185 4 0.01
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.31
Consensus pattern (180 bp):
ATAAGACTTGCTATCTTCAGTCTACTCCACTGCAACTTCAGGGAGATCAAACTTGTAACTGCAAT
CTACCCCACTATAACTTCAGGGGATAAGATTAGTGACTTAACCTGCTCCACTACAAATTCAGGGA
GATAAGGTCTGTAATTTAGCCTTAATCTATTCCACTGCAACTTCAGGGAA
Found at i:56220875 original size:356 final size:356
Alignment explanation
Indices: 56220222--56220937 Score: 1351
Period size: 356 Copynumber: 2.0 Consensus size: 356
56220212 CGATACCTAG
*
56220222 GCCTAAGGTATTGATACCTTCATCAAAATTTGAATTACTAGAATGTTATTTTGGTATTTCGTTCT
1 GCCTAAGGTATTGATACCTTCATCAAAATTTGAATTACTAGAATGTTATTTTGGAATTTCGTTCT
56220287 TTGTTTTCTCTTCAAAAAGCCATTTGGGATCATTGAAATACTTTTACAAGCCAAGGATTTCGATC
66 TTGTTTTCTCTTCAAAAAGCCATTTGGGATCATTGAAATACTTTTACAAGCCAAGGATTTCGATC
*
56220352 ATGAAAGAAGGTCAATGAAGGATCTAAATGTCCTTTTGTTACTCATGTGGTTAAGGATGCAAATT
131 ATGAAAGAAGGTCAATGAAGGATCTAAATGTCCTTTTGTTACTCATGTGGGTAAGGATGCAAATT
*
56220417 CTTTACATAAGAATGCTATGAAAAATTATCTTGATCTTTATAACTCCTTGCAAAATATTGAGAGG
196 CTTTACATAAGAATGCTATGAAAAATTATCTTGATCTTTATAACTCATTGCAAAATATTGAGAGG
*
56220482 ATTATTGAGAAACAAAATTCTGAGCGAGTTGCAAGAAATCGGCTATAGCTCAGGGTGTCAATAGG
261 ATTATTGAGAAACAAAATTCTGAGCGAGTTGCAAGAAATCGGCTATAGCTCAAGGTGTCAATAGG
56220547 TGTTGTTAAGTGGCTTGTATTTCAAGGTTGT
326 TGTTGTTAAGTGGCTTGTATTTCAAGGTTGT
*
56220578 GCCTAAGGTATTGATACCTTCATCAAAATTTGAATTTCTAGAATGTTATTTTGGAATTTCGTTCT
1 GCCTAAGGTATTGATACCTTCATCAAAATTTGAATTACTAGAATGTTATTTTGGAATTTCGTTCT
*
56220643 TTGTTTTCTCTTCAACAAGCCATTTGGGATCATTGAAATACTTTTACAAGCCAAGGATTTCGATC
66 TTGTTTTCTCTTCAAAAAGCCATTTGGGATCATTGAAATACTTTTACAAGCCAAGGATTTCGATC
56220708 ATGAAAGAAGGTCAATGAAGGATCTAAATGTCCTTTTGTTACTCATGTGGGTAAGGATGCAAATT
131 ATGAAAGAAGGTCAATGAAGGATCTAAATGTCCTTTTGTTACTCATGTGGGTAAGGATGCAAATT
56220773 CTTTACATAAGAATGCTATGAAAAATTATCTTGATCTTTATAACTCATTGCAAAATATTGAGAGG
196 CTTTACATAAGAATGCTATGAAAAATTATCTTGATCTTTATAACTCATTGCAAAATATTGAGAGG
* * *
56220838 ATTATTGAGAAATAAAATTTTGAGCGAGTTGCAAGAAATCGTCTATAGCTCAAGGTGTCAATAGG
261 ATTATTGAGAAACAAAATTCTGAGCGAGTTGCAAGAAATCGGCTATAGCTCAAGGTGTCAATAGG
56220903 TGTTGTTAAGTGGCTTGTATTTCAAGGTTGT
326 TGTTGTTAAGTGGCTTGTATTTCAAGGTTGT
56220934 GCCT
1 GCCT
56220938 TTAGGTGACG
Statistics
Matches: 351, Mismatches: 9, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
356 351 1.00
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.36
Consensus pattern (356 bp):
GCCTAAGGTATTGATACCTTCATCAAAATTTGAATTACTAGAATGTTATTTTGGAATTTCGTTCT
TTGTTTTCTCTTCAAAAAGCCATTTGGGATCATTGAAATACTTTTACAAGCCAAGGATTTCGATC
ATGAAAGAAGGTCAATGAAGGATCTAAATGTCCTTTTGTTACTCATGTGGGTAAGGATGCAAATT
CTTTACATAAGAATGCTATGAAAAATTATCTTGATCTTTATAACTCATTGCAAAATATTGAGAGG
ATTATTGAGAAACAAAATTCTGAGCGAGTTGCAAGAAATCGGCTATAGCTCAAGGTGTCAATAGG
TGTTGTTAAGTGGCTTGTATTTCAAGGTTGT
Found at i:56224085 original size:14 final size:14
Alignment explanation
Indices: 56224066--56224105 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 14
56224056 AATCGGTAAA
56224066 ATTTTCCTATCGAT
1 ATTTTCCTATCGAT
56224080 ATTTTCCTA-CG--
1 ATTTTCCTATCGAT
56224091 ATTTTCCTATC-AT
1 ATTTTCCTATCGAT
56224104 AT
1 AT
56224106 CAATATTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
11 9 0.39
12 1 0.04
13 4 0.17
14 9 0.39
ACGTcount: A:0.23, C:0.23, G:0.05, T:0.50
Consensus pattern (14 bp):
ATTTTCCTATCGAT
Found at i:56226634 original size:17 final size:17
Alignment explanation
Indices: 56226592--56226639 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
56226582 AGAGGTTACA
*
56226592 ATAAGTATTGAAACACT
1 ATAAATATTGAAACACT
** *
56226609 ATAGTTATTGGAACACT
1 ATAAATATTGAAACACT
56226626 ATAAATATTTGAAA
1 ATAAATA-TTGAAA
56226640 ACGTTCTAGT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
17 19 0.79
18 5 0.21
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.33
Consensus pattern (17 bp):
ATAAATATTGAAACACT
Found at i:56226822 original size:165 final size:168
Alignment explanation
Indices: 56226437--56226871 Score: 645
Period size: 165 Copynumber: 2.6 Consensus size: 168
56226427 ACCCATTCAT
*
56226437 TTATAGTTATTGGAACACTATAAATATTTGAAAACGTTGCAGTGATTCATTCATTTCCCTAAACA
1 TTATAGTTATTGGAACACTATAAATATTTGAAAACGTTCCAGTGATTCATTCATTTCCC-AAACA
* *
56226502 AAGGTCCGAAATCTAAACTT-AGAACTAAAAATAAATTGTAATTGCAAGACTCCATATCTTATGA
65 AAGGTCCGAAATC-CAACTTCA-AACTAAAAATAAATTGTAATTGCAAGACTCCATATCATATGA
*
56226566 TGAAAATAATATTACGAGAGGTTACAATAAGTATTGAAACA
128 TGAAAATAATATTACGAGAGGTTACAACAAGTATTGAAACA
* *
56226607 CTATAGTTATTGGAACACTATAAATATTTGAAAACGTTCTAGTGATTCATTCATTTCCCAAACAA
1 TTATAGTTATTGGAACACTATAAATATTTGAAAACGTTCCAGTGATTCATTCATTTCCCAAACAA
*
56226672 AGGTCCGAAATCCAACTTCAAACTAAAAATAAATTGTAATTGCAAGAC-GCATATCATATGA-GA
66 AGGTCCGAAATCCAACTTCAAACTAAAAATAAATTGTAATTGCAAGACTCCATATCATATGATGA
*
56226735 AAATAATATTA-TAGAGGTTACAACAAGTATTGGAAAC-
131 AAATAATATTACGAGAGGTTACAACAAGTATT-GAAACA
* * * * *
56226772 TTATAGTTATTGGAACACTATAAATATTTGAAAATGTTCCAGTAATTCATTTA-TTCCTAAACGA
1 TTATAGTTATTGGAACACTATAAATATTTGAAAACGTTCCAGTGATTCATTCATTTCCCAAACAA
56226836 AGGTCCGAAATCCAAAC-TCAAA-T-AAAATAAATTGTA
66 AGGTCCGAAATCC-AACTTCAAACTAAAAATAAATTGTA
56226872 TCCATACCGT
Statistics
Matches: 247, Mismatches: 15, Indels: 14
0.89 0.05 0.05
Matches are distributed among these distances:
162 13 0.05
163 1 0.00
164 27 0.11
165 69 0.28
166 18 0.07
167 11 0.04
168 33 0.13
169 19 0.08
170 56 0.23
ACGTcount: A:0.42, C:0.14, G:0.13, T:0.31
Consensus pattern (168 bp):
TTATAGTTATTGGAACACTATAAATATTTGAAAACGTTCCAGTGATTCATTCATTTCCCAAACAA
AGGTCCGAAATCCAACTTCAAACTAAAAATAAATTGTAATTGCAAGACTCCATATCATATGATGA
AAATAATATTACGAGAGGTTACAACAAGTATTGAAACA
Found at i:56249398 original size:14 final size:14
Alignment explanation
Indices: 56249379--56249418 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 14
56249369 AATCGGTAAA
56249379 ATTTTCCTATCGAT
1 ATTTTCCTATCGAT
56249393 ATTTTCCTA-CG--
1 ATTTTCCTATCGAT
56249404 ATTTTCCTATC-AT
1 ATTTTCCTATCGAT
56249417 AT
1 AT
56249419 CAATATTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
11 9 0.39
12 1 0.04
13 4 0.17
14 9 0.39
ACGTcount: A:0.23, C:0.23, G:0.05, T:0.50
Consensus pattern (14 bp):
ATTTTCCTATCGAT
Found at i:56250930 original size:18 final size:19
Alignment explanation
Indices: 56250883--56250931 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 19
56250873 CAATTATTGA
56250883 ATTTTATTTTAATAAGGAT
1 ATTTTATTTTAATAAGGAT
* * *
56250902 A-TTAATATTAATAA-TAT
1 ATTTTATTTTAATAAGGAT
56250919 ATTTTATTTTAAT
1 ATTTTATTTTAAT
56250932 TAAAACAGAG
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
17 3 0.12
18 20 0.83
19 1 0.04
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (19 bp):
ATTTTATTTTAATAAGGAT
Found at i:56252064 original size:171 final size:171
Alignment explanation
Indices: 56251771--56252217 Score: 727
Period size: 171 Copynumber: 2.6 Consensus size: 171
56251761 ACCCATTCAT
56251771 TTATAGTTATTGGAACACTATAAATATTTGAAAATGTTGCT-GTGATTCATTCATTTCCCTAAAC
1 TTATAGTTATTGGAACACTATAAATATTTGAAAATGTT-CTAGTGATTCATTCATTTCCCTAAAC
* * * *
56251835 AAAGGTCTGAAATCTAAACTT-AGAACTAAAAATAAATTGTAATTGCAAGACTCCATATCGTATG
65 AAAGGTCCGAAATCCAAACTTCA-AACTAAAAATAAATTGTAATTGCAAAACGCCATATCGTATG
* *
56251899 ATGAAAATAATATTACAAGAGGTTACAATAAGTATTGGAAGAC
129 ACGAAAATAATATTACAAGAGGTTACAATAAGTATTGGAACAC
* * *
56251942 TTATAGTTATTGGAACACTATAAATATTTGAAAACGTTCTAGTGATTCCTTCATTTCCCAAAACA
1 TTATAGTTATTGGAACACTATAAATATTTGAAAATGTTCTAGTGATTCATTCATTTCCCTAAACA
56252007 AAGGTCCGAAATCCAAACTTCAAACTAAAAATAAATTGTAATTGCAAAACGCCATATCGTATGAC
66 AAGGTCCGAAATCCAAACTTCAAACTAAAAATAAATTGTAATTGCAAAACGCCATATCGTATGAC
*
56252072 GAAAATAATATTACGAGAGGTTACAATAAGTATTGGAACAC
131 GAAAATAATATTACAAGAGGTTACAATAAGTATTGGAACAC
* ** * *
56252113 TTATAGTTATTGGAACACTATAAATATTTGAAAATGTTCCAGAAATTTATTTATTTCCCTAAACA
1 TTATAGTTATTGGAACACTATAAATATTTGAAAATGTTCTAGTGATTCATTCATTTCCCTAAACA
56252178 AAGGTCCGAAATCCAAACTTCAAACTAAAAATAAATTGTA
66 AAGGTCCGAAATCCAAACTTCAAACTAAAAATAAATTGTA
56252218 CTCCATACCG
Statistics
Matches: 256, Mismatches: 18, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
170 2 0.01
171 253 0.99
172 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.13, T:0.31
Consensus pattern (171 bp):
TTATAGTTATTGGAACACTATAAATATTTGAAAATGTTCTAGTGATTCATTCATTTCCCTAAACA
AAGGTCCGAAATCCAAACTTCAAACTAAAAATAAATTGTAATTGCAAAACGCCATATCGTATGAC
GAAAATAATATTACAAGAGGTTACAATAAGTATTGGAACAC
Found at i:56252140 original size:17 final size:18
Alignment explanation
Indices: 56252097--56252140 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
56252087 AGAGGTTACA
*
56252097 ATAAGTATTGGAACACTT
1 ATAAATATTGGAACACTT
**
56252115 ATAGTTATTGGAACAC-T
1 ATAAATATTGGAACACTT
56252132 ATAAATATT
1 ATAAATATT
56252141 TGAAAATGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.36
Consensus pattern (18 bp):
ATAAATATTGGAACACTT
Found at i:56261244 original size:62 final size:61
Alignment explanation
Indices: 56261147--56261333 Score: 257
Period size: 62 Copynumber: 3.0 Consensus size: 61
56261137 TCTTTTTTTT
* * *
56261147 GCATTCATACAACAACATTACATTTCATCGCATGCAATAAATTTCTTAAAATACAAAAATAC
1 GCATTCATGCATCAACATTACATTTCATTGCATGCAATAAATTTCTTAAAAT-CAAAAATAC
* *
56261209 GCATTTATGCATCAACATTAAATTTCATTGCATGCAATAAATTTCTTAAAATCCAAAAATAC
1 GCATTCATGCATCAACATTACATTTCATTGCATGCAATAAATTTCTTAAAAT-CAAAAATAC
* * * * *
56261271 GCATTCATGCATCAACATTACGTTTCATTGCATACAGTAAGTTTCCTAAAATCAAAAAGTAC
1 GCATTCATGCATCAACATTACATTTCATTGCATGCAATAAATTTCTTAAAATCAAAAA-TAC
56261333 G
1 G
56261334 TCGAGTGTAG
Statistics
Matches: 111, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
61 6 0.05
62 105 0.95
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (61 bp):
GCATTCATGCATCAACATTACATTTCATTGCATGCAATAAATTTCTTAAAATCAAAAATAC
Found at i:56263130 original size:13 final size:13
Alignment explanation
Indices: 56263107--56263140 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
56263097 ACTTCACTTG
56263107 AAAAAAG-AAATA
1 AAAAAAGAAAATA
56263119 AAAAAAGAAAATA
1 AAAAAAGAAAATA
*
56263132 AAAGAAGAA
1 AAAAAAGAA
56263141 CAAAAAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 7 0.35
13 13 0.65
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (13 bp):
AAAAAAGAAAATA
Found at i:56263136 original size:22 final size:22
Alignment explanation
Indices: 56263109--56263151 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
56263099 TTCACTTGAA
56263109 AAAAGAA-ATAAAAAAAGAAAAT
1 AAAAGAAGA-AAAAAAAGAAAAT
*
56263131 AAAAGAAGAACAAAAAGAAAA
1 AAAAGAAGAAAAAAAAGAAAA
56263152 AGGAGAGGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.81, C:0.02, G:0.12, T:0.05
Consensus pattern (22 bp):
AAAAGAAGAAAAAAAAGAAAAT
Found at i:56264241 original size:44 final size:44
Alignment explanation
Indices: 56264174--56264579 Score: 401
Period size: 44 Copynumber: 9.2 Consensus size: 44
56264164 AAGTCATTAA
* *
56264174 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAT
* * *** *
56264218 AGCAGGTCCTGTCTTCCTATATTGGTAAGAAGTGGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAT
* * * * *
56264262 -GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAT
* * *
56264306 AACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAT
* * ** *
56264350 AGCAGGTCCTGTCTTCCTATATTAGTAG-GAAGTAGATTGAAGA-
1 AGCAGATCTTGTCTTCCTATATT-GGCGTGAAGTAGATCGAAGAT
* *
56264393 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAT
* * * *
56264437 AGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAA
1 AGCAGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAT
* * *
56264481 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGTAGATT
1 AGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGA-T
* * * *
56264526 AGCAGGT-TCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAA
1 AGCAGATCT-TGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAT
*
56264570 AACAGATCTT
1 AGCAGATCTT
56264580 ATCTCTCTGA
Statistics
Matches: 289, Mismatches: 62, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
42 2 0.01
43 54 0.19
44 176 0.61
45 56 0.19
46 1 0.00
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (44 bp):
AGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAT
Found at i:56264329 original size:88 final size:88
Alignment explanation
Indices: 56264174--56264579 Score: 521
Period size: 88 Copynumber: 4.6 Consensus size: 88
56264164 AAGTCATTAA
* * * * * * * * *
56264174 AGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTAT
1 AGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGT
*** *
56264238 ATTGGTAAGAAGTGGATCGAAGAT
65 ATTGGCGTGAAGTAGATCGAAGAT
* * * * *
56264262 -GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGT
1 AGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGT
56264326 ATTGGCGTGAAGTAGATCGAAGAT
65 ATTGGCGTGAAGTAGATCGAAGAT
* * *
56264350 AGCAGGTCCTGTCTTCCTATATTAGTAGGAAGTAGATTGAAG-AAGCAGATCTTGTCTTCATGTA
1 AGCAGATCCTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTA
56264414 TTGGCGTGAAGTAGATCGAAGAT
66 TTGGCGTGAAGTAGATCGAAGAT
*
56264437 AGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGAAAGCAGATCTTGTCTTCATGTA
1 AGCAGATCCTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTA
*
56264502 TTGGCGTGAAGTAGATCGTAGATT
66 TTGGCGTGAAGTAGATCGAAGA-T
* * * *
56264526 AGCAGGTTCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGAAAACAGATCTT
1 AGCAGATCCTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGATCTT
56264580 ATCTCTCTGA
Statistics
Matches: 282, Mismatches: 32, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
87 102 0.36
88 107 0.38
89 73 0.26
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (88 bp):
AGCAGATCCTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTA
TTGGCGTGAAGTAGATCGAAGAT
Found at i:56264489 original size:175 final size:176
Alignment explanation
Indices: 56264202--56264579 Score: 535
Period size: 175 Copynumber: 2.1 Consensus size: 176
56264192 GTATTGGCGT
* * * * *
56264202 GAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAAGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGA-AGCAGATCTTGTCTTCATATATTGGCAAGAAGTAGATCGAAGATGCAGA
* *
56264267 TCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGC
65 TCCTGTCTTCCCATACTGGTAGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGC
56264332 GTGAAGTAGATCGAAGA-TAGCAGGTCCTGTCTTCCTATATTAGTAG
130 GTGAAGTAGATCGAAGATTAGCAGGTCCTGTCTTCCTATATTAGTAG
* * **
56264378 GAAGTAGATTGAAGAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGA
1 GAAGTAGATCGAAGAAGCAGATCTTGTCTTCATATATTGGCAAGAAGTAGATCGAAGAT-GCAGA
* * * *
56264443 TCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
65 TCCTGTCTTCCCATACTGGTAGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGC
* * *
56264507 GTGAAGTAGATCGTAGATTAGCAGGTTCTGTCTTCCTATATTGGTAG
130 GTGAAGTAGATCGAAGATTAGCAGGTCCTGTCTTCCTATATTAGTAG
* *
56264554 GAAGTGGATCGAAGAAAACAGATCTT
1 GAAGTAGATCGAAG-AAGCAGATCTT
56264580 ATCTCTCTGA
Statistics
Matches: 178, Mismatches: 21, Indels: 5
0.87 0.10 0.02
Matches are distributed among these distances:
175 92 0.52
176 76 0.43
177 10 0.06
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.30
Consensus pattern (176 bp):
GAAGTAGATCGAAGAAGCAGATCTTGTCTTCATATATTGGCAAGAAGTAGATCGAAGATGCAGAT
CCTGTCTTCCCATACTGGTAGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCG
TGAAGTAGATCGAAGATTAGCAGGTCCTGTCTTCCTATATTAGTAG
Found at i:56265266 original size:199 final size:198
Alignment explanation
Indices: 56264624--56265423 Score: 1259
Period size: 199 Copynumber: 4.0 Consensus size: 198
56264614 AAACATTATC
* *
56264624 TCTCTGGC-GATACAGTGGAGCAGATTAAAGCAACGACGGCGAATCTTGCTTCTCTGATATTGCA
1 TCTCTGGCAG-TACAGTAGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCA
* *
56264688 ATTAAGAAGATTGAAGTCGCAACGGCGAATCTTACTTTCCTAGCAATGCAGTGGATCAGATTGAA
65 ATTAAGAAGATTGAAGCCGCAACGGCGAATCTTACTTTCCTAGCGATGCAGTGGATCAGATTGAA
56264753 GCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATC
130 GCTACAAC-GCGAATCTTGTTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATC
56264818 TCACT
194 TCACT
* *
56264823 TTTTTGGCAGTACAGTAGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCAA
1 TCTCTGGCAGTACAGTAGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCAA
* * *
56264888 TTAAGAAGATTGAAACTGCAACGACGAATCTTACTTTCCTAGCGATGCAGTGGATCAGATTGAAG
66 TTAAGAAGATTGAAGCCGCAACGGCGAATCTTACTTTCCTAGCGATGCAGTGGATCAGATTGAAG
*
56264953 CTACAACG-GTAATCTTGTTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAACGGCAAATCT
131 CTACAACGCG-AATCTTGTTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCT
56265017 CACT
195 CACT
* * *
56265021 TTTTTGGCAGTACAGTAGAGCAGATTAAAGCTACGATGGCGAATCTTGCTTCTCTGATATTGCAA
1 TCTCTGGCAGTACAGTAGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCAA
*
56265086 TTAAGAAGATTGAAGCCGCAACGGCGAATCTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAG
66 TTAAGAAGATTGAAGCCGCAACGGCGAATCTTACTTTCCTAGCGATGCAGTGGATCAGATTGAAG
* *
56265151 CTACAACAGCAAATCTTGTTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAACGGTGAATCT
131 CTACAAC-GCGAATCTTGTTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCT
56265216 CACT
195 CACT
* * *
56265220 TCTCTGGCAGTACAGT-GCAGTAGATTAAAGCTACGACGGTGAATCTTGCTTC-CTTGACATTGC
1 TCTCTGGCAGTACAGTAG-AGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTC-TGATATTGC
* * *
56265283 AATTTAA-AATATTGAAGCCGCAACGGCGAATCTTACTTTCTTGGCGATGCAGTGGATCAGATTG
64 AA-TTAAGAAGATTGAAGCCGCAACGGCGAATCTTACTTTCCTAGCGATGCAGTGGATCAGATTG
* ** *
56265347 AAGCTACAACGACGGATCTTGTTCCCCGACATTGCAATTAATCAGATTGAAGCCACAACGGTGAA
128 AAGCTACAACG-CGAATCTTGTTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAA
56265412 TCTCACT
192 TCTCACT
56265419 TCTCT
1 TCTCT
56265424 AGTAGACAGA
Statistics
Matches: 563, Mismatches: 30, Indels: 16
0.92 0.05 0.03
Matches are distributed among these distances:
197 1 0.00
198 193 0.34
199 364 0.65
200 5 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (198 bp):
TCTCTGGCAGTACAGTAGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCAA
TTAAGAAGATTGAAGCCGCAACGGCGAATCTTACTTTCCTAGCGATGCAGTGGATCAGATTGAAG
CTACAACGCGAATCTTGTTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTC
ACT
Found at i:56265350 original size:50 final size:50
Alignment explanation
Indices: 56264695--56265419 Score: 250
Period size: 50 Copynumber: 14.6 Consensus size: 50
56264685 GCAATTAAGA
* * * * *
56264695 AGATTGAAGTCGCAACGGCGAATCTTACTTTCCTAGCAATGCAGTGGATC
1 AGATTGAAGCCACAACGGCGAATCTTACTTTCTTGGCATTGCAGTGGATC
* * * ** * * ** **
56264745 AGATTGAAGCTACAACGGCGAATCTT-GTTCCCCGACATTGCAATTAAAG
1 AGATTGAAGCCACAACGGCGAATCTTACTTTCTTGGCATTGCAGTGGATC
* * * * * *
56264794 AGATTGAAGCCACAACGGCGAATCTCACTTTTTTGGCAGTACAGTAGAGC
1 AGATTGAAGCCACAACGGCGAATCTTACTTTCTTGGCATTGCAGTGGATC
* * * * ** * ** **
56264844 AGATTAAAGCTACGACGGCGAATCTTGC-TTCTCTGATATTGCAATTAAGA
1 AGATTGAAGCCACAACGGCGAATCTTACTTTCT-TGGCATTGCAGTGGATC
* ** * * *
56264894 AGATTGAAACTGCAACGACGAATCTTACTTTCCTAGCGA-TGCAGTGGATC
1 AGATTGAAGCCACAACGGCGAATCTTACTTTCTTGGC-ATTGCAGTGGATC
* * * * ** * * ** **
56264944 AGATTGAAGCTACAACGG-TAATCTT-GTTCCCCGACATTGCAATTAAAG
1 AGATTGAAGCCACAACGGCGAATCTTACTTTCTTGGCATTGCAGTGGATC
* * * * * * *
56264992 AGATTGAAGCCACAACGGCAAATCTCACTTTTTTGGCAGTACAGTAGAGC
1 AGATTGAAGCCACAACGGCGAATCTTACTTTCTTGGCATTGCAGTGGATC
* * * * * ** * ** **
56265042 AGATTAAAGCTACGATGGCGAATCTTGC-TTCTCTGATATTGCAATTAAGA
1 AGATTGAAGCCACAACGGCGAATCTTACTTTCT-TGGCATTGCAGTGGATC
* *
56265092 AGATTGAAGCCGCAACGGCGAATCTTACTTTCCTGGCGA-TGCAGTGGATC
1 AGATTGAAGCCACAACGGCGAATCTTACTTTCTTGGC-ATTGCAGTGGATC
* * * * * ** * * ** **
56265142 AGATTGAAGCTACAACAGCAAATCTT-GTTCCCCGACATTGCAATTAAAG
1 AGATTGAAGCCACAACGGCGAATCTTACTTTCTTGGCATTGCAGTGGATC
* * * * *
56265191 AGATTGAAGCCACAACGGTGAATCTCAC-TTCTCTGGCAGTACAGTGCAGT-
1 AGATTGAAGCCACAACGGCGAATCTTACTTTCT-TGGCATTGCAGTGGA-TC
* * * * * * * * ** **
56265241 AGATTAAAGCTACGACGGTGAATCTTGCTTCCTTGACATTGCAATTTAAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTTCTTGGCATTGCAGTGGATC
* *
56265291 ATATTGAAGCCGCAACGGCGAATCTTACTTTCTTGGCGA-TGCAGTGGATC
1 AGATTGAAGCCACAACGGCGAATCTTACTTTCTTGGC-ATTGCAGTGGATC
* * * * * ** * * **
56265341 AGATTGAAGCTACAACGACGGATCTT-GTTCCCCGACATTGCAATTAATC
1 AGATTGAAGCCACAACGGCGAATCTTACTTTCTTGGCATTGCAGTGGATC
* *
56265390 AGATTGAAGCCACAACGGTGAATCTCACTT
1 AGATTGAAGCCACAACGGCGAATCTTACTT
56265420 CTCTAGTAGA
Statistics
Matches: 463, Mismatches: 193, Indels: 38
0.67 0.28 0.05
Matches are distributed among these distances:
47 1 0.00
48 30 0.06
49 122 0.26
50 298 0.64
51 12 0.03
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (50 bp):
AGATTGAAGCCACAACGGCGAATCTTACTTTCTTGGCATTGCAGTGGATC
Found at i:56266273 original size:82 final size:82
Alignment explanation
Indices: 56265427--56266251 Score: 1377
Period size: 82 Copynumber: 10.0 Consensus size: 82
56265417 CTTCTCTAGT
* * *
56265427 AGACAGAAAC-CAGATCTTATCTCCCTAAGCAGCAGTGGAGCAGATCACATCAAGTCTTATCTCC
1 AGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCC
*
56265491 CTAAGCAGTAGTGGAGC
66 CTAAGCAATAGTGGAGC
* *
56265508 AGACAAAAGAAAC-CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATC
1 AGAC---AGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATC
56265572 TCCCTAAGCAATAGTGGAGC
63 TCCCTAAGCAATAGTGGAGC
* *
56265592 AGACAGAACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTACCTCC
1 AGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCC
56265657 CTAAGCAATAGTGGAGC
66 CTAAGCAATAGTGGAGC
*
56265674 AGACAGAACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCC
1 AGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCC
56265739 CTAAGCAATAGTGGAGC
66 CTAAGCAATAGTGGAGC
*
56265756 AGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCT
1 AGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCC
**
56265821 CTAAGCAATAGTGGAAT
66 CTAAGCAATAGTGGAGC
* *
56265838 AGACAGAACCACATATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCC
1 AGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCC
56265903 CTAAGCAATAGTGGAGC
66 CTAAGCAATAGTGGAGC
*
56265920 AGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTACCTCC
1 AGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCC
56265985 CTAAGCAATAGTGGAGC
66 CTAAGCAATAGTGGAGC
* * *
56266002 AGACAGAACCACAGATCTTATCTCCCTAAGCAGCAGTGGAGCAGATCGCATCAACTCTTATCTCT
1 AGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCC
56266067 CTAAGCAATAGTGGAGC
66 CTAAGCAATAGTGGAGC
*
56266084 AGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTTC
1 AGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCC
56266149 CTAAGCAATAGTGGAGC
66 CTAAGCAATAGTGGAGC
* * *
56266166 AGACAGAACCACAGATCTTAT-TCCCCTAAGCAGTAGTGGAGTAGATCACATCCAGTCTTATCTC
1 AGACAGAACCACAGATCTTATCT-CCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTC
* *
56266230 CCTAAGCAGTAGTAGAGC
65 CCTAAGCAATAGTGGAGC
56266248 AGAC
1 AGAC
56266252 TAAAAACACA
Statistics
Matches: 706, Mismatches: 33, Indels: 9
0.94 0.04 0.01
Matches are distributed among these distances:
81 10 0.01
82 619 0.88
84 77 0.11
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (82 bp):
AGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCC
CTAAGCAATAGTGGAGC
Found at i:56270448 original size:62 final size:62
Alignment explanation
Indices: 56270351--56270537 Score: 284
Period size: 62 Copynumber: 3.0 Consensus size: 62
56270341 TCTTTTTTTT
* * *
56270351 GCATTTATGCAACAACATTACATTTCATCGCATGCAATAAATTTCTTAAAATCCAAAAATAC
1 GCATTCATGCATCAACATTACATTTCATTGCATGCAATAAATTTCTTAAAATCCAAAAATAC
*
56270413 GCATTCATGCATCAACATTAAATTTCATTGCATGCAATAAATTTCTTAAAATCCAAAAATAC
1 GCATTCATGCATCAACATTACATTTCATTGCATGCAATAAATTTCTTAAAATCCAAAAATAC
* * * * * *
56270475 GCATTCATGCATCAACATTACGTTTCATTGCATACAGTAAGTTTCCTAAAATCCAAAAGTAC
1 GCATTCATGCATCAACATTACATTTCATTGCATGCAATAAATTTCTTAAAATCCAAAAATAC
56270537 G
1 G
56270538 TCAAGTTTAG
Statistics
Matches: 114, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 114 1.00
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (62 bp):
GCATTCATGCATCAACATTACATTTCATTGCATGCAATAAATTTCTTAAAATCCAAAAATAC
Found at i:56272338 original size:22 final size:22
Alignment explanation
Indices: 56272311--56272353 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
56272301 TTCACTTGAA
56272311 AAAAGAA-ATAAAAAAAGAAAAG
1 AAAAGAAGA-AAAAAAAGAAAAG
*
56272333 AAAAGAAGAACAAAAAGAAAA
1 AAAAGAAGAAAAAAAAGAAAA
56272354 AGGAGAGGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.81, C:0.02, G:0.14, T:0.02
Consensus pattern (22 bp):
AAAAGAAGAAAAAAAAGAAAAG
Found at i:56273443 original size:44 final size:44
Alignment explanation
Indices: 56273376--56273781 Score: 392
Period size: 44 Copynumber: 9.2 Consensus size: 44
56273366 AAGTCATTAA
* *
56273376 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAT
* * *** *
56273420 AGCAGGTCCTGTCTTCCTATATTGGTAAGAAGTGGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAT
* * * * *
56273464 -GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAT
* * *
56273508 AACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAT
* * ** * *
56273552 AGCAGGTCCTGTCTTCCTATATTAGTAG-GAAGTGGATTGAAGA-
1 AGCAGATCTTGTCTTCCTATATT-GGCGTGAAGTAGATCGAAGAT
* *
56273595 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAT
* * * *
56273639 AGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAA
1 AGCAGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAT
* * *
56273683 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGTAGATT
1 AGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGA-T
* * * *
56273728 AGCAGGT-TCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAA
1 AGCAGATCT-TGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAT
*
56273772 AACAGATCTT
1 AGCAGATCTT
56273782 ATCTCTCTGA
Statistics
Matches: 287, Mismatches: 64, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
42 2 0.01
43 53 0.18
44 175 0.61
45 56 0.20
46 1 0.00
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (44 bp):
AGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAT
Found at i:56273531 original size:88 final size:88
Alignment explanation
Indices: 56273376--56273781 Score: 521
Period size: 88 Copynumber: 4.6 Consensus size: 88
56273366 AAGTCATTAA
* * * * * * * * * *
56273376 AGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTAT
1 AGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAAAGCAGATCTTGTCTTCATGT
*** *
56273440 ATTGGTAAGAAGTGGATCGAAGAT
65 ATTGGCGTGAAGTAGATCGAAGAT
* * * * * *
56273464 -GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGT
1 AGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAAAGCAGATCTTGTCTTCATGT
56273528 ATTGGCGTGAAGTAGATCGAAGAT
65 ATTGGCGTGAAGTAGATCGAAGAT
* * *
56273552 AGCAGGTCCTGTCTTCCTATATTAGTAGGAAGTGGATTGAAG-AAGCAGATCTTGTCTTCATGTA
1 AGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGAAAGCAGATCTTGTCTTCATGTA
56273616 TTGGCGTGAAGTAGATCGAAGAT
66 TTGGCGTGAAGTAGATCGAAGAT
56273639 AGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGAAAGCAGATCTTGTCTTCATGTA
1 AGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGAAAGCAGATCTTGTCTTCATGTA
*
56273704 TTGGCGTGAAGTAGATCGTAGATT
66 TTGGCGTGAAGTAGATCGAAGA-T
* * *
56273728 AGCAGGTTCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGAAAACAGATCTT
1 AGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGAAAGCAGATCTT
56273782 ATCTCTCTGA
Statistics
Matches: 282, Mismatches: 32, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
87 103 0.37
88 106 0.38
89 73 0.26
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (88 bp):
AGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGAAAGCAGATCTTGTCTTCATGTA
TTGGCGTGAAGTAGATCGAAGAT
Found at i:56273679 original size:175 final size:177
Alignment explanation
Indices: 56273448--56273781 Score: 530
Period size: 175 Copynumber: 1.9 Consensus size: 177
56273438 ATATTGGTAA
* * *
56273448 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAG
1 GAAGTAGATCGAAGATGCAGATCCTGTCTTCCCATACTGGTAGCGAAGTAGATCGAAGAAAACAG
56273513 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGA-TAGCAGGTCCTGTCTTCCTATATTAG
66 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATTAGCAGGTCCTGTCTTCCTATATTAG
* *
56273577 TAGGAAGTGGATTGAAG-AAGCAGATCTTGTCTTCATGTATTGGCGT
131 TAGGAAGTGGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGT
* * * *
56273623 GAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAAAGCA
1 GAAGTAGATCGAAGAT-GCAGATCCTGTCTTCCCATACTGGTAGCGAAGTAGATCGAAGAAAACA
* * *
56273687 GATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGTAGATTAGCAGGTTCTGTCTTCCTATATTG
65 GATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATTAGCAGGTCCTGTCTTCCTATATTA
56273752 GTAGGAAGTGGATCGAAGAAAACAGATCTT
130 GTAGGAAGTGGATCGAAGAAAACAGATCTT
56273782 ATCTCTCTGA
Statistics
Matches: 144, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
175 71 0.49
176 63 0.44
177 10 0.07
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (177 bp):
GAAGTAGATCGAAGATGCAGATCCTGTCTTCCCATACTGGTAGCGAAGTAGATCGAAGAAAACAG
ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATTAGCAGGTCCTGTCTTCCTATATTAG
TAGGAAGTGGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGT
Found at i:56274033 original size:99 final size:100
Alignment explanation
Indices: 56273829--56274621 Score: 922
Period size: 99 Copynumber: 8.0 Consensus size: 100
56273819 CATTATCTCT
* * * * *
56273829 CTGGCGATGCAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCAATT-
1 CTGGCAATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTA
* *
56273893 AAGAAGATTGAAGTCGCAACGGCGAATCTTACTTTC
66 AAG-AGATTGAAGCCACAACGGCGAATCTTACTTTC
* * *
56273929 CTGGCAATGCAGTGGATCAGATTGAAGCTACAATGGCGAATCTTG-TTCCCCGACATTGCAATTA
1 CTGGCAATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTA
* *
56273993 AAGAGATTGAAGCCACAACGGCGAATCTCACTTTT
66 AAGAGATTGAAGCCACAACGGCGAATCTTACTTTC
* * * * * * * *
56274028 TTGGCAGTACAGTAGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCAATT-
1 CTGGCAATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTA
* *
56274092 AAGAAGATTGAAGCCGCAACGACGAATCTTACTTTC
66 AAG-AGATTGAAGCCACAACGGCGAATCTTACTTTC
* * * *
56274128 CTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGTGAATCTTG-TTCCCCGACATTGCAATTA
1 CTGGCAATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTA
* * *
56274192 AAGAGATTGAAGCCACAATGGCAAATC-TACTTTT
66 AAGAGATTGAAGCCACAACGGCGAATCTTACTTTC
* * * * * * * *
56274226 TTGGCAGTACAGTAGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCAATT-
1 CTGGCAATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTA
* *
56274290 AAGAAGATTGAAGCCGCAACGGTGAATCTTACTTTC
66 AAG-AGATTGAAGCCACAACGGCGAATCTTACTTTC
* * * * *
56274326 CTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCAAATCTTG-GTCCCCGACATTGCAATTA
1 CTGGCAATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTA
*
56274390 AAGAGATTGAAGCCACAACGGCGAATCTCAC-TTC
66 AAGAGATTGAAGCCACAACGGCGAATCTTACTTTC
* * * * * ** *
56274424 TCTGGCAGTACAGTGCAGCAGATTAAAGCTACGACGGTGAATCTTGCTTCCTTGATATTGCAATT
1 -CTGGCAATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAA-T
*
56274489 TAAA-AGATTGAAGCCGCAACGGCGAATCTTACTTTC
64 TAAAGAGATTGAAGCCACAACGGCGAATCTTACTTTC
* * * *
56274525 TTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTG-TTCCCCGACATTGCAATTA
1 CTGGCAATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTA
** *
56274589 ATCAGATTGAAGCCACAACGGCGAATCTCACTT
66 AAGAGATTGAAGCCACAACGGCGAATCTTACTT
56274622 CTCTAGCAGA
Statistics
Matches: 573, Mismatches: 107, Indels: 27
0.81 0.15 0.04
Matches are distributed among these distances:
98 52 0.09
99 269 0.47
100 244 0.43
101 8 0.01
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (100 bp):
CTGGCAATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTA
AAGAGATTGAAGCCACAACGGCGAATCTTACTTTC
Found at i:56274183 original size:199 final size:199
Alignment explanation
Indices: 56273838--56274621 Score: 1360
Period size: 199 Copynumber: 3.9 Consensus size: 199
56273828 TCTGGCGATG
*
56273838 CAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCAATTAAGAAGATTG
1 CAGTAGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCAATTAAGAAGATTG
* * *
56273903 AAGTCGCAACGGCGAATCTTACTTTCCTGGCAATGCAGTGGATCAGATTGAAGCTACAATGGCGA
66 AAGCCGCAACGGCGAATCTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGA
56273968 ATCTTGTTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCACTTTTTTGGC
131 ATCTTGTTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCACTTTTTTGGC
56274033 AGTA
196 AGTA
56274037 CAGTAGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCAATTAAGAAGATTG
1 CAGTAGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCAATTAAGAAGATTG
* *
56274102 AAGCCGCAACGACGAATCTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGTGA
66 AAGCCGCAACGGCGAATCTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGA
* *
56274167 ATCTTGTTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAATGGCAAATCT-ACTTTTTTGGC
131 ATCTTGTTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCACTTTTTTGGC
56274231 AGTA
196 AGTA
56274235 CAGTAGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCAATTAAGAAGATTG
1 CAGTAGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCAATTAAGAAGATTG
* *
56274300 AAGCCGCAACGGTGAATCTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCAA
66 AAGCCGCAACGGCGAATCTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGA
* * *
56274365 ATCTTGGTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCACTTCTCTGGC
131 ATCTTGTTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCACTTTTTTGGC
56274430 AGTA
196 AGTA
*
56274434 CAGT-GCAGCAGATTAAAGCTACGACGGTGAATCTTGCTTC-CTTGATATTGCAATTTAA-AAGA
1 CAGTAG-AGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTC-TGATATTGCAA-TTAAGAAGA
*
56274496 TTGAAGCCGCAACGGCGAATCTTACTTTCTTGGCGATGCAGTGGATCAGATTGAAGCTACAACGG
63 TTGAAGCCGCAACGGCGAATCTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGG
**
56274561 CGAATCTTGTTCCCCGACATTGCAATTAATCAGATTGAAGCCACAACGGCGAATCTCACTT
128 CGAATCTTGTTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCACTT
56274622 CTCTAGCAGA
Statistics
Matches: 557, Mismatches: 24, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
198 193 0.35
199 360 0.65
200 4 0.01
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (199 bp):
CAGTAGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCAATTAAGAAGATTG
AAGCCGCAACGGCGAATCTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGA
ATCTTGTTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCACTTTTTTGGC
AGTA
Found at i:56274550 original size:50 final size:50
Alignment explanation
Indices: 56273836--56274621 Score: 362
Period size: 50 Copynumber: 15.8 Consensus size: 50
56273826 TCTCTGGCGA
* * * * * **
56273836 TGCAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTGC-TTCTCTGATAT
1 TGCAGTTGAGCAGATTGAAGCCACAACGGCGAATCTTACTTTCT-TGGCAT
* * * * * * *
56273886 TGCAATTAAGAAGATTGAAGTCGCAACGGCGAATCTTACTTTCCTGGCAA
1 TGCAGTTGAGCAGATTGAAGCCACAACGGCGAATCTTACTTTCTTGGCAT
* * * * * * ** *
56273936 TGCAGTGGATCAGATTGAAGCTACAATGGCGAATCTT-GTTCCCCGACAT
1 TGCAGTTGAGCAGATTGAAGCCACAACGGCGAATCTTACTTTCTTGGCAT
* * * * *
56273985 TGCAATTAAAG-AGATTGAAGCCACAACGGCGAATCTCACTTTTTTGGCAG
1 TGCAGTT-GAGCAGATTGAAGCCACAACGGCGAATCTTACTTTCTTGGCAT
* * * * * * **
56274035 TACAGTAGAGCAGATTAAAGCTACGACGGCGAATCTTGC-TTCTCTGATAT
1 TGCAGTTGAGCAGATTGAAGCCACAACGGCGAATCTTACTTTCT-TGGCAT
* * * * * *
56274085 TGCAATTAAGAAGATTGAAGCCGCAACGACGAATCTTACTTTCCTGGCGA-
1 TGCAGTTGAGCAGATTGAAGCCACAACGGCGAATCTTACTTTCTTGGC-AT
* * * * * * ** *
56274135 TGCAGTGGATCAGATTGAAGCTACAACGGTGAATCTT-GTTCCCCGACAT
1 TGCAGTTGAGCAGATTGAAGCCACAACGGCGAATCTTACTTTCTTGGCAT
* * * * * *
56274184 TGCAATTAAAG-AGATTGAAGCCACAATGGCAAATC-TACTTTTTTGGCAG
1 TGCAGTT-GAGCAGATTGAAGCCACAACGGCGAATCTTACTTTCTTGGCAT
* * * * * * **
56274233 TACAGTAGAGCAGATTAAAGCTACGACGGCGAATCTTGC-TTCTCTGATAT
1 TGCAGTTGAGCAGATTGAAGCCACAACGGCGAATCTTACTTTCT-TGGCAT
* * * * * *
56274283 TGCAATTAAGAAGATTGAAGCCGCAACGGTGAATCTTACTTTCCTGGCGA-
1 TGCAGTTGAGCAGATTGAAGCCACAACGGCGAATCTTACTTTCTTGGC-AT
* * * * ** * ** *
56274333 TGCAGTGGATCAGATTGAAGCTACAACGGCAAATCTT-GGTCCCCGACAT
1 TGCAGTTGAGCAGATTGAAGCCACAACGGCGAATCTTACTTTCTTGGCAT
* * * *
56274382 TGCAATTAAAG-AGATTGAAGCCACAACGGCGAATCTCAC-TTCTCTGGCAG
1 TGCAGTT-GAGCAGATTGAAGCCACAACGGCGAATCTTACTTTCT-TGGCAT
* * * * * * * **
56274432 TACAG-TGCAGCAGATTAAAGCTACGACGGTGAATCTTGCTTCCTTGATAT
1 TGCAGTTG-AGCAGATTGAAGCCACAACGGCGAATCTTACTTTCTTGGCAT
* * ** *
56274482 TGCAATTTAAAAGATTGAAGCCGCAACGGCGAATCTTACTTTCTTGGCGA-
1 TGCAGTTGAGCAGATTGAAGCCACAACGGCGAATCTTACTTTCTTGGC-AT
* * * * * ** *
56274532 TGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTT-GTTCCCCGACAT
1 TGCAGTTGAGCAGATTGAAGCCACAACGGCGAATCTTACTTTCTTGGCAT
* * * *
56274581 TGCAATTAATCAGATTGAAGCCACAACGGCGAATCTCACTT
1 TGCAGTTGAGCAGATTGAAGCCACAACGGCGAATCTTACTT
56274622 CTCTAGCAGA
Statistics
Matches: 513, Mismatches: 197, Indels: 52
0.67 0.26 0.07
Matches are distributed among these distances:
48 6 0.01
49 177 0.35
50 314 0.61
51 16 0.03
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCAGTTGAGCAGATTGAAGCCACAACGGCGAATCTTACTTTCTTGGCAT
Found at i:56274576 original size:397 final size:398
Alignment explanation
Indices: 56273838--56274621 Score: 1360
Period size: 397 Copynumber: 2.0 Consensus size: 398
56273828 TCTGGCGATG
*
56273838 CAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCAATTAAGAAGATTG
1 CAGTAGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCAATTAAGAAGATTG
* * *
56273903 AAGTCGCAACGGCGAATCTTACTTTCCTGGCAATGCAGTGGATCAGATTGAAGCTACAATGGCGA
66 AAGCCGCAACGGCGAATCTTACTTTCCTGGCAATGCAGTGGATCAGATTGAAGCTACAACGGCAA
* * *
56273968 ATCTTGTTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCACTTTTTTGGC
131 ATCTTGGTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCACTTCTCTGGC
56274033 AGTACAGTAGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCAATTAAGAAG
196 AGTACAGTAGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCAATTAAGAAG
56274098 ATTGAAGCCGCAACGACGAATCTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACG
261 ATTGAAGCCGCAACGACGAATCTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACG
* * *
56274163 GTGAATCTTGTTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAATGGCAAATCT-ACTTTTT
326 GCGAATCTTGTTCCCCGACATTGCAATTAAACAGATTGAAGCCACAACGGCAAATCTCACTTTTT
56274227 TGGCAGTA
391 TGGCAGTA
56274235 CAGTAGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCAATTAAGAAGATTG
1 CAGTAGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCAATTAAGAAGATTG
* *
56274300 AAGCCGCAACGGTGAATCTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCAA
66 AAGCCGCAACGGCGAATCTTACTTTCCTGGCAATGCAGTGGATCAGATTGAAGCTACAACGGCAA
56274365 ATCTTGGTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCACTTCTCTGGC
131 ATCTTGGTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCACTTCTCTGGC
*
56274430 AGTACAGT-GCAGCAGATTAAAGCTACGACGGTGAATCTTGCTTC-CTTGATATTGCAATTTAA-
196 AGTACAGTAG-AGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTC-TGATATTGCAA-TTAAG
* *
56274492 AAGATTGAAGCCGCAACGGCGAATCTTACTTTCTTGGCGATGCAGTGGATCAGATTGAAGCTACA
258 AAGATTGAAGCCGCAACGACGAATCTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACA
* *
56274557 ACGGCGAATCTTGTTCCCCGACATTGCAATTAATCAGATTGAAGCCACAACGGCGAATCTCACTT
323 ACGGCGAATCTTGTTCCCCGACATTGCAATTAAACAGATTGAAGCCACAACGGCAAATCTCACTT
56274622 CTCTAGCAGA
Statistics
Matches: 366, Mismatches: 17, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
396 2 0.01
397 356 0.97
398 8 0.02
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (398 bp):
CAGTAGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCAATTAAGAAGATTG
AAGCCGCAACGGCGAATCTTACTTTCCTGGCAATGCAGTGGATCAGATTGAAGCTACAACGGCAA
ATCTTGGTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCACTTCTCTGGC
AGTACAGTAGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCTCTGATATTGCAATTAAGAAG
ATTGAAGCCGCAACGACGAATCTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACG
GCGAATCTTGTTCCCCGACATTGCAATTAAACAGATTGAAGCCACAACGGCAAATCTCACTTTTT
TGGCAGTA
Found at i:56275517 original size:82 final size:82
Alignment explanation
Indices: 56274643--56275495 Score: 1185
Period size: 82 Copynumber: 10.4 Consensus size: 82
56274633 AGAAACCAGA
* * * *
56274643 TCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCA-CATCA-AG-TCTTATCTCCCTAAGCAGTAGT
1 TCTTATCTCCCTAAGCAATAGTGGAGCA-GACAGAACCACAGATCTTATCTCCCTAAGCAGTAGT
* * *
56274705 GGAGCAGA-CAAAAGAAACCAG
65 GGAGCAGATC----GCATCAAG
* * * *
56274726 ATCTTATCTCCCTAAGCAATAGTGGAGCAGATC-GCATCA-AG-TCGTATCTCCCTAAGCAATAG
1 -TCTTATCTCCCTAAGCAATAGTGGAGCAGA-CAGAACCACAGATCTTATCTCCCTAAGCAGTAG
*
56274788 TGGAGCAGA-CAG-AACTACAG
64 TGGAGCAGATC-GCATC-A-AG
* * * *
56274808 ATCTTATCTCCCTAAGCAATAGTGGAGCAGATC-GCATCA-AG-TCTTACCTCCCTAAGCAATAG
1 -TCTTATCTCCCTAAGCAATAGTGGAGCAGA-CAGAACCACAGATCTTATCTCCCTAAGCAGTAG
* *
56274870 TGGAGCAGA-CAGAACCACAG
64 TGGAGCAGATC-GCATCA-AG
*
56274890 ATCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAATAGT
1 -TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGT
56274955 GGAGCAGATCGCATCAAG
65 GGAGCAGATCGCATCAAG
56274973 TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
56275038 GAGCAGATCGCATCAAG
66 GAGCAGATCGCATCAAG
* * *
56275055 TCTTATCTCCCTAAGCAATAGTGGAACAGATAGAACCACAGATCTTATCTCCCTAAGCAATAGTG
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
* *
56275120 GAGCAGATCGTAGCAAG
66 GAGCAGATCGCATCAAG
56275137 TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
56275202 GAGCAGATCGCATCAAG
66 GAGCAGATCGCATCAAG
* *
56275219 TCTTACCTCCCTAAGCAATAGTGGAGCAGACAGAACCACGGATCTTATCTCCCTAAGCAGTAGTG
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
56275284 GAGCAGATCGCATCAAG
66 GAGCAGATCGCATCAAG
56275301 TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
56275366 GAGCAGATCGCATCAAG
66 GAGCAGATCGCATCAAG
56275383 TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTAT-TCCCCTAAGCAGTAGT
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCT-CCCTAAGCAGTAGT
* * *
56275447 GGAGTAGATCACATCCAG
65 GGAGCAGATCGCATCAAG
* *
56275465 TCTTATCTCCCTACGCAGTAGTGGAGCAGAC
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGAC
56275496 TAAAAACACA
Statistics
Matches: 726, Mismatches: 33, Indels: 22
0.93 0.04 0.03
Matches are distributed among these distances:
80 3 0.00
81 4 0.01
82 614 0.85
83 7 0.01
84 97 0.13
85 1 0.00
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.22
Consensus pattern (82 bp):
TCTTATCTCCCTAAGCAATAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
GAGCAGATCGCATCAAG
Found at i:56280723 original size:26 final size:26
Alignment explanation
Indices: 56280685--56280763 Score: 97
Period size: 26 Copynumber: 3.1 Consensus size: 26
56280675 TTTTAAAGTA
**
56280685 AATA-GCACAACAATTTAAGGTAAAT
1 AATATGCACAACAATTTAAAATAAAT
* * *
56280710 AATATGCAAAACAAATTAAAATGAAT
1 AATATGCACAACAATTTAAAATAAAT
*
56280736 AATATACACAACAATTTAAAATAAAT
1 AATATGCACAACAATTTAAAATAAAT
56280762 AA
1 AA
56280764 CCTCCATGAC
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
25 4 0.09
26 40 0.91
ACGTcount: A:0.59, C:0.10, G:0.06, T:0.24
Consensus pattern (26 bp):
AATATGCACAACAATTTAAAATAAAT
Found at i:56280851 original size:21 final size:22
Alignment explanation
Indices: 56280825--56280874 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
56280815 AAAAAGAAAT
*
56280825 TTAAAATAATATACA-AAATAG
1 TTAAAATAATATACATAAAAAG
** *
56280846 TTAAAAGGATATACATAAAAAT
1 TTAAAATAATATACATAAAAAG
56280868 TTAAAAT
1 TTAAAAT
56280875 GGGGGATAGA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.60, C:0.04, G:0.06, T:0.30
Consensus pattern (22 bp):
TTAAAATAATATACATAAAAAG
Found at i:56280948 original size:5 final size:5
Alignment explanation
Indices: 56280938--56280972 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
56280928 AATTACAAGA
56280938 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
56280973 GAAGGGCCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:56282523 original size:181 final size:178
Alignment explanation
Indices: 56282302--56282749 Score: 484
Period size: 181 Copynumber: 2.5 Consensus size: 178
56282292 ATTTAGGGGG
* *
56282302 ATAAGATTG-TATCTTCAGTTTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTCAACC
1 ATAAGATTGCTATCTTCAGTCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTCAATC
* * *
56282366 TGCTCCACTACAACTTCA-GGGAGAT-A-ATGTTTGA-TATGATA-C-GCTCTACTA-AAACTTC
66 TAC-CCACTA-AACTTCAGGGGA-ATAAGATG-GTGACT-TGA-ACCTGCTCCACTACAAA-TTC
* * * *
56282424 AAAGATATAAGATCTGTAATTTATAG-CTTCAATTTGTTCCACTGCAACTTCAGGGAC
124 AAAGAGATAAGATCTGTAA-TT-TAGCCTT-AATCTATTCCACTGCAACTTCAGGGAA
* *
56282481 ATAAGATTTGCTATCTTCAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAAT
1 ATAAGA-TTGCTATCTTCAGTCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTCAAT
* * **
56282546 CTACCCTAGTGAAACTTCAGGGGAATAAGATGGTGACTTTAACCTGCTCCACTACAAATTCAGGG
65 CTACCC-ACT-AAACTTCAGGGGAATAAGATGGTGACTTGAACCTGCTCCACTACAAATTCAAAG
*
56282611 AGATAAGGTCTGTAATTTAGCCTTAATCTATTCCACTGCAACTTCAGGGAA
128 AGATAAGATCTGTAATTTAGCCTTAATCTATTCCACTGCAACTTCAGGGAA
* * * * *
56282662 ATGAGACTTGCTATCTTCAGTCTGCTCCACTTCATCTTCAGGGAGATCAA-ACTTGTAACTGCAA
1 ATAAGA-TTGCTATCTTCAGTCTACTCCACTACAACTTCAGGGAGAT-AAGACTTGTAACTTCAA
56282726 TCTACCCCACTATAACTTCAGGGG
64 TCTA-CCCACTA-AACTTCAGGGG
56282750 GTAAGATTAG
Statistics
Matches: 230, Mismatches: 24, Indels: 28
0.82 0.09 0.10
Matches are distributed among these distances:
179 6 0.03
180 6 0.03
181 163 0.71
182 22 0.10
183 30 0.13
184 3 0.01
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (178 bp):
ATAAGATTGCTATCTTCAGTCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTCAATC
TACCCACTAAACTTCAGGGGAATAAGATGGTGACTTGAACCTGCTCCACTACAAATTCAAAGAGA
TAAGATCTGTAATTTAGCCTTAATCTATTCCACTGCAACTTCAGGGAA
Found at i:56282564 original size:44 final size:45
Alignment explanation
Indices: 56282157--56282803 Score: 179
Period size: 44 Copynumber: 14.5 Consensus size: 45
56282147 GTTCCAGTGC
* * * * * *
56282157 AACTTCAGGGAGATAGGA-TTAG-AAACTTTAACCTGCTCCACTGT
1 AACTTCAGGGAGATAAGACTT-GCTAACTTCAATCTACTCCACTGA
* * * * * *
56282201 AACTTCAGAGAGATAA-AGTTAGATATCTTCAATCTGCTCCACTGC
1 AACTTCAGGGAGATAAGACTT-GCTAACTTCAATCTACTCCACTGA
* * * *
56282246 AACTTTAGGGAGATAAGACTTG-TAGCTTCAATCTGC-CCTATTGCA
1 AACTTCAGGGAGATAAGACTTGCTAACTTCAATCTACTCC-ACTG-A
* * * * *
56282291 AA-TTTAGGGGGATAAGA-TTG-TATCTTCAGTTTACTCCACT-A
1 AACTTCAGGGAGATAAGACTTGCTAACTTCAATCTACTCCACTGA
* *
56282332 CAACTTCAGGGAGATAAGACTTG-TAACTTCAACCTGCTCCACT-A
1 -AACTTCAGGGAGATAAGACTTGCTAACTTCAATCTACTCCACTGA
* * * * * *
56282376 CAACTTCAGGGAGATAATG-TTTGAT-A--T-GATAC-GCTCTACTAA
1 -AACTTCAGGGAGATAA-GACTTGCTAACTTCAAT-CTACTCCACTGA
** * ** * ** *
56282418 AACTTCAAAGATATAAGATCTGTAATTTATAGCTTCAATTTGTTCCACTGC
1 AACTTCAGGGAGATAAGA-CT-T--GCTA-A-CTTCAATCTACTCCACTGA
* * * * *
56282469 AACTTCAGGGACATAAGATTTGCTATCTTCAGTCTACTCCACTGC
1 AACTTCAGGGAGATAAGACTTGCTAACTTCAATCTACTCCACTGA
* *
56282514 AACTTCAGGGAGATAAGACTTG-TAACTTTAATCTAC-CCTAGTGA
1 AACTTCAGGGAGATAAGACTTGCTAACTTCAATCTACTCC-ACTGA
* * * * *
56282558 AACTTCAGGG-GAATAAGA--TGGTGACTTTAACCTGCTCCACT-A
1 AACTTCAGGGAG-ATAAGACTTGCTAACTTCAATCTACTCCACTGA
* * * * *
56282600 CAAATTCAGGGAGATAAG-GTCTG-TAATTTAGCCTTAATCTATTCCACTGC
1 -AACTTCAGGGAGATAAGACT-TGCTAACTT---C--AATCTACTCCACTGA
* * * * * **
56282650 AACTTCAGGGAAATGAGACTTGCTATCTTCAGTCTGCTCCACTTC
1 AACTTCAGGGAGATAAGACTTGCTAACTTCAATCTACTCCACTGA
* * *
56282695 ATCTTCAGGGAGATCAA-ACTTG-TAACTGCAATCTACCCCACT-A
1 AACTTCAGGGAGAT-AAGACTTGCTAACTTCAATCTACTCCACTGA
* * * * * *
56282738 TAACTTCAGGG-GGTAAGA-TTAG-TGACTT-AATCTGCTTCGCTGC
1 -AACTTCAGGGAGATAAGACTT-GCTAACTTCAATCTACTCCACTGA
* *
56282781 AACTTTAGGGAGATAAGATTTGC
1 AACTTCAGGGAGATAAGACTTGC
56282804 CATAATAACT
Statistics
Matches: 451, Mismatches: 102, Indels: 100
0.69 0.16 0.15
Matches are distributed among these distances:
40 1 0.00
41 22 0.05
42 31 0.07
43 77 0.17
44 153 0.34
45 102 0.23
46 4 0.01
47 4 0.01
49 27 0.06
50 7 0.02
51 23 0.05
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (45 bp):
AACTTCAGGGAGATAAGACTTGCTAACTTCAATCTACTCCACTGA
Found at i:56288528 original size:355 final size:355
Alignment explanation
Indices: 56287877--56288590 Score: 1331
Period size: 355 Copynumber: 2.0 Consensus size: 355
56287867 CGATACCTAG
*
56287877 GCCTAAGGTATTGATACCTTCATCAAAATTTGAATTACTAGAATGTTATTTTGGTATTTCGTTCT
1 GCCTAAGGTATTGATACCTTCATCAAAATTTGAATTACTAGAATGTTATTTTGGAATTTCGTTCT
56287942 TTGTTTTCTCTTCAAAAAGCCATTTGGGATCATTGAAATACTTTTACAAGCCAAGGATTTCGATC
66 TTGTTTTCTCTTCAAAAAGCCATTTGGGATCATTGAAATACTTTTACAAGCCAAGGATTTCGATC
*
56288007 ATGAAAGAAGGTCAATGAAGGATCTAAATGTCCTTTTGTTACTCATGTGGTTAAGGATGCAAATT
131 ATGAAAGAAGGTCAATGAAGGATCTAAATGTCCTTTTGTTACTCATGTGGGTAAGGATGCAAATT
*
56288072 CTTTACATAAGAATGCTATGAAAATTATCTTGATCTTTATAACTCCTTGCAAAATATTGAGAGGA
196 CTTTACATAAGAATGCTATGAAAATTATCTTGATCTTTATAACTCATTGCAAAATATTGAGAGGA
*
56288137 TTATTGAGAAACAAAATTCTGAGCGAGTTGCAAGAAATCGGCTATAGCTCAGGGTGTCAATAGGT
261 TTATTGAGAAACAAAATTCTGAGCGAGTTGCAAGAAATCGGCTATAGCTCAAGGTGTCAATAGGT
56288202 GTTGTTAAGTGGCTTGTATTTCAAGGTTGT
326 GTTGTTAAGTGGCTTGTATTTCAAGGTTGT
*
56288232 GCCTAAGGTATTGATACCTTCATCAAAATTTGAATTTCTAGAATGTTATTTTGGAATTTCGTTCT
1 GCCTAAGGTATTGATACCTTCATCAAAATTTGAATTACTAGAATGTTATTTTGGAATTTCGTTCT
*
56288297 TTG-TTTCTCTTCAACAAGCCATTTGGGATCATTGAAATACTTTTACAAGCCAAGGATTTCGATC
66 TTGTTTTCTCTTCAAAAAGCCATTTGGGATCATTGAAATACTTTTACAAGCCAAGGATTTCGATC
56288361 ATGAAAGAAGGTCAATGAAGGATCTAAATGTCCTTTTGTTACTCATGTGGGTAAGGATGCAAATT
131 ATGAAAGAAGGTCAATGAAGGATCTAAATGTCCTTTTGTTACTCATGTGGGTAAGGATGCAAATT
56288426 CTTTACATAAGAATGCTATGAAAAATTATCTTGATCTTTATAACTCATTGCAAAATATTGAGAGG
196 CTTTACATAAGAATGCTATG-AAAATTATCTTGATCTTTATAACTCATTGCAAAATATTGAGAGG
* * *
56288491 ATTATTGAGAAATAAAATTTTGAGCGAGTTGCAAGAAATCGTCTATAGCTCAAGGTGTCAATAGG
260 ATTATTGAGAAACAAAATTCTGAGCGAGTTGCAAGAAATCGGCTATAGCTCAAGGTGTCAATAGG
56288556 TGTTGTTAAGTGGCTTGTATTTCAAGGTTGT
325 TGTTGTTAAGTGGCTTGTATTTCAAGGTTGT
56288587 GCCT
1 GCCT
56288591 TTAGGTGACG
Statistics
Matches: 349, Mismatches: 9, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
354 144 0.41
355 205 0.59
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.36
Consensus pattern (355 bp):
GCCTAAGGTATTGATACCTTCATCAAAATTTGAATTACTAGAATGTTATTTTGGAATTTCGTTCT
TTGTTTTCTCTTCAAAAAGCCATTTGGGATCATTGAAATACTTTTACAAGCCAAGGATTTCGATC
ATGAAAGAAGGTCAATGAAGGATCTAAATGTCCTTTTGTTACTCATGTGGGTAAGGATGCAAATT
CTTTACATAAGAATGCTATGAAAATTATCTTGATCTTTATAACTCATTGCAAAATATTGAGAGGA
TTATTGAGAAACAAAATTCTGAGCGAGTTGCAAGAAATCGGCTATAGCTCAAGGTGTCAATAGGT
GTTGTTAAGTGGCTTGTATTTCAAGGTTGT
Found at i:56291738 original size:14 final size:14
Alignment explanation
Indices: 56291719--56291758 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 14
56291709 AATCGGTAAA
56291719 ATTTTCCTATCGAT
1 ATTTTCCTATCGAT
56291733 ATTTTCCTA-CG--
1 ATTTTCCTATCGAT
56291744 ATTTTCCTATC-AT
1 ATTTTCCTATCGAT
56291757 AT
1 AT
56291759 CAATATTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
11 9 0.39
12 1 0.04
13 4 0.17
14 9 0.39
ACGTcount: A:0.23, C:0.23, G:0.05, T:0.50
Consensus pattern (14 bp):
ATTTTCCTATCGAT
Found at i:56293254 original size:18 final size:19
Alignment explanation
Indices: 56293207--56293255 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 19
56293197 CAATTAATGA
56293207 ATTTTATTTTAATAAGGAT
1 ATTTTATTTTAATAAGGAT
* * *
56293226 A-TTAATGTTAATAA-TAT
1 ATTTTATTTTAATAAGGAT
56293243 ATTTTATTTTAAT
1 ATTTTATTTTAAT
56293256 CAAAACAGAG
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
17 3 0.12
18 20 0.83
19 1 0.04
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (19 bp):
ATTTTATTTTAATAAGGAT
Found at i:56294444 original size:170 final size:170
Alignment explanation
Indices: 56294086--56294531 Score: 716
Period size: 170 Copynumber: 2.6 Consensus size: 170
56294076 CACCCATTCA
56294086 TTATAGTTATTGGAACACTATAAATATTTGAAAACGTTGCAGTGATTCATTCATTTCCCTAAACA
1 TTATAGTTATTGGAACACTATAAATATTTGAAAACGTT-CAGTGATTCATTCATTTCCCTAAACA
* * *
56294151 AAGGTCCGAAATCTAAACTT-AGAACTAAAAATAAATTGTAATTGCAAGACTCCATATCTTATGA
65 AAGGTCCGAAATCCAAACTTCA-AACTAAAAATAAATTGTAATTGCAAGACGCCATATCATATGA
* *
56294215 TGAAAATAATATTACGAGAGGTTACAATAAGTATTGAAACAC
129 CGAAAATAATATTACGAGAGGTTACAACAAGTATTGAAACAC
*
56294257 TTATAGTTATTGGAACACTATAAATATTTGAAAACGTTCTAGTGATTCATTCATTTCCCAAAACA
1 TTATAGTTATTGGAACACTATAAATATTTGAAAACGTTC-AGTGATTCATTCATTTCCCTAAACA
56294322 AAGGTCCGAAATCCAAACTTCAAACT-AAAATAAATTGTAATTGCAAGACGCCATATCATATGAC
65 AAGGTCCGAAATCCAAACTTCAAACTAAAAATAAATTGTAATTGCAAGACGCCATATCATATGAC
* * *
56294386 GAAAATAATATTACTAGAGGTTACAACAAGTATTGGAATAC
130 GAAAATAATATTACGAGAGGTTACAACAAGTATTGAAACAC
* * * *
56294427 TTATAGTTATTGGAACACTATAAATATTTGAAAATGTTCCAGTAATTCATTTATTTCCCTAAACG
1 TTATAGTTATTGGAACACTATAAATATTTGAAAACGTT-CAGTGATTCATTCATTTCCCTAAACA
*
56294492 AAGGTCCGAAATCCAAACTTCAAATTAAAAATAAATTGTA
65 AAGGTCCGAAATCCAAACTTCAAACTAAAAATAAATTGTA
56294532 CTCCATACCG
Statistics
Matches: 256, Mismatches: 15, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
170 156 0.61
171 99 0.39
172 1 0.00
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (170 bp):
TTATAGTTATTGGAACACTATAAATATTTGAAAACGTTCAGTGATTCATTCATTTCCCTAAACAA
AGGTCCGAAATCCAAACTTCAAACTAAAAATAAATTGTAATTGCAAGACGCCATATCATATGACG
AAAATAATATTACGAGAGGTTACAACAAGTATTGAAACAC
Found at i:56307470 original size:24 final size:22
Alignment explanation
Indices: 56307441--56307484 Score: 70
Period size: 24 Copynumber: 1.9 Consensus size: 22
56307431 ATCACTTTTC
56307441 TCCCCAAAAATTCCCCCTAAATTT
1 TCCCCAAAAA-TCCCCC-AAATTT
56307465 TCCCCAAAAATCCCCCAAAT
1 TCCCCAAAAATCCCCCAAAT
56307485 CTAGAACCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 4 0.20
23 6 0.30
24 10 0.50
ACGTcount: A:0.36, C:0.41, G:0.00, T:0.23
Consensus pattern (22 bp):
TCCCCAAAAATCCCCCAAATTT
Found at i:56308586 original size:26 final size:26
Alignment explanation
Indices: 56308557--56308614 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
56308547 CTCGTTGCAT
*
56308557 AATAATTCTCACTCTATAGCTTATCA
1 AATAATTCTCACTCTATAGCTTATAA
*
56308583 AATAATTCTTACTCTATAGCTTATAA
1 AATAATTCTCACTCTATAGCTTATAA
56308609 AATAAT
1 AATAAT
56308615 ATAAATCTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.40, C:0.17, G:0.03, T:0.40
Consensus pattern (26 bp):
AATAATTCTCACTCTATAGCTTATAA
Found at i:56309101 original size:16 final size:16
Alignment explanation
Indices: 56309080--56309110 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
56309070 CCAATTCAAA
56309080 TAGTATTATTTAATAC
1 TAGTATTATTTAATAC
56309096 TAGTATTATTTAATA
1 TAGTATTATTTAATA
56309111 TGGTTCCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (16 bp):
TAGTATTATTTAATAC
Found at i:56309905 original size:9 final size:9
Alignment explanation
Indices: 56309891--56309974 Score: 85
Period size: 9 Copynumber: 10.0 Consensus size: 9
56309881 TTAGAAATAA
56309891 TACATAACT
1 TACATAACT
56309900 TACATAA--
1 TACATAACT
56309907 TATC-TAACT
1 TA-CATAACT
56309916 TACATAACT
1 TACATAACT
56309925 TACATAACT
1 TACATAACT
56309934 TACATAA--
1 TACATAACT
*
56309941 TACACAACT
1 TACATAACT
56309950 TACATAA--
1 TACATAACT
56309957 TACATAACCT
1 TACATAA-CT
56309967 T-CATAACT
1 TACATAACT
56309975 CATAGATACT
Statistics
Matches: 64, Mismatches: 2, Indels: 19
0.75 0.02 0.22
Matches are distributed among these distances:
7 18 0.28
8 4 0.06
9 41 0.64
10 1 0.02
ACGTcount: A:0.45, C:0.23, G:0.00, T:0.32
Consensus pattern (9 bp):
TACATAACT
Found at i:56309972 original size:16 final size:16
Alignment explanation
Indices: 56309887--56309964 Score: 113
Period size: 16 Copynumber: 4.8 Consensus size: 16
56309877 AATTTTAGAA
56309887 ATAATACATAACTTAC
1 ATAATACATAACTTAC
56309903 ATAATATC-TAACTTAC
1 ATAATA-CATAACTTAC
56309919 ATAACTTACATAACTTAC
1 ATAA--TACATAACTTAC
*
56309937 ATAATACACAACTTAC
1 ATAATACATAACTTAC
56309953 ATAATACATAAC
1 ATAATACATAAC
56309965 CTTCATAACT
Statistics
Matches: 56, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
16 40 0.71
17 2 0.04
18 14 0.25
ACGTcount: A:0.49, C:0.21, G:0.00, T:0.31
Consensus pattern (16 bp):
ATAATACATAACTTAC
Found at i:56309974 original size:25 final size:24
Alignment explanation
Indices: 56309893--56309974 Score: 87
Period size: 25 Copynumber: 3.3 Consensus size: 24
56309883 AGAAATAATA
56309893 CATAACTTACATAATATC-TAACTT
1 CATAACTTACATAATA-CATAACTT
*
56309917 ACATAACTTACATAACTTACATAA-TA
1 -CATAACTTACATAA--TACATAACTT
*
56309943 CACAACTTACATAATACATAACCTT
1 CATAACTTACATAATACATAA-CTT
56309968 CATAACT
1 CATAACT
56309975 CATAGATACT
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
23 7 0.15
25 34 0.71
26 2 0.04
27 5 0.10
ACGTcount: A:0.45, C:0.23, G:0.00, T:0.32
Consensus pattern (24 bp):
CATAACTTACATAATACATAACTT
Found at i:56315932 original size:43 final size:43
Alignment explanation
Indices: 56315838--56316196 Score: 447
Period size: 43 Copynumber: 8.3 Consensus size: 43
56315828 TCTGCCAAAA
** * *
56315838 TTAGCGGCGTTTGTG-GAAAAAGCGTCGCTAAAAGGTCTTAGTCT
1 TTAGCGGCGTTTGTGTG-GGAAGCGCCGCT-AAAGGTCTTGGTCT
* * ** * *
56315882 TTTGCGGCGTTTGTGAGAAAAGCGCCACTAAAGGTCTTGATCT
1 TTAGCGGCGTTTGTGTGGGAAGCGCCGCTAAAGGTCTTGGTCT
* *
56315925 TTAGCGGCGTTTGTCGT-GTAAGCGCCGCTAAAAAGGTCATT-GTTT
1 TTAGCGGCGTTTGT-GTGGGAAGCGCCGCT--AAAGGTC-TTGGTCT
* * *
56315970 TTAGCGACGTTTGTGTGGGAAGCGCTGCTAAAGGTCTTAGTCT
1 TTAGCGGCGTTTGTGTGGGAAGCGCCGCTAAAGGTCTTGGTCT
*
56316013 TTAGCGGCGTTTGTGTGGGAAGC-CTCGCTAAAAGTCTTGGTCT
1 TTAGCGGCGTTTGTGTGGGAAGCGC-CGCTAAAGGTCTTGGTCT
56316056 TTAGCGGCGTTTGTGTGGGAAGCGCCGCTAAAGGTCTTGGTCT
1 TTAGCGGCGTTTGTGTGGGAAGCGCCGCTAAAGGTCTTGGTCT
* *
56316099 TTAGCGGCGTTTGTGTGGAAAGCGCCACTAAAGGTCTTGGTCT
1 TTAGCGGCGTTTGTGTGGGAAGCGCCGCTAAAGGTCTTGGTCT
* *
56316142 TTAGCGGCGTTTGTGTTGGAAGCGCCGCTAAAGGTCTTGGCCT
1 TTAGCGGCGTTTGTGTGGGAAGCGCCGCTAAAGGTCTTGGTCT
56316185 TTAGCGGCGTTT
1 TTAGCGGCGTTT
56316197 TTTCCTAGAA
Statistics
Matches: 279, Mismatches: 27, Indels: 19
0.86 0.08 0.06
Matches are distributed among these distances:
42 3 0.01
43 213 0.76
44 28 0.10
45 33 0.12
46 2 0.01
ACGTcount: A:0.18, C:0.18, G:0.32, T:0.31
Consensus pattern (43 bp):
TTAGCGGCGTTTGTGTGGGAAGCGCCGCTAAAGGTCTTGGTCT
Found at i:56318285 original size:125 final size:124
Alignment explanation
Indices: 56317828--56318283 Score: 624
Period size: 125 Copynumber: 3.7 Consensus size: 124
56317818 GCAAAAAGCG
* * * *
56317828 CCGCAAACAATTAAGTAGAACGCCTTCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCATTTAT
1 CCGCAAATAATTAAGCAGAACGCCGTCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGTTTAT
** *
56317893 CTGGAAACGCCGGTAAAGATCTAGCATTTGCGGCACTTATCAAAAAACGCCACTAATGCT
66 CTGGAAACGCCACTAAAGATCTAGCATTTGCGGC-CATATCAAAAAACGCCACTAATGCT
* *
56317953 CCTCAAATAATTAAGCAGAACGCCGTCGTTTAACTTTGACCTGTAGTGACACTAGCGGCGTTTAT
1 CCGCAAATAATTAAGCAGAACGCCGTCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGTTTAT
* * * * * * *
56318018 CAGGAAATGCCGCCAAAGATCAAGCATTTGTGGCAATTATCAAAAAACGCCACTAATGCT
66 CTGGAAACGCCACTAAAGATCTAGCATTTGCGGCCA-TATCAAAAAACGCCACTAATGCT
** * **
56318078 CAACAAAAAATTAAGCAGAACGCCGTCGTTTAACTTTGACCTGTAGTGGCACTAGTAGCGTTTAT
1 CCGCAAATAATTAAGCAGAACGCCGTCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGTTTAT
** * * *
56318143 CTAAAAACGCCAGTAATGATCTAGCATTTGCGGCGCATACCAAAAAACGCCACTAATGCT
66 CTGGAAACGCCACTAAAGATCTAGCATTTGCGGC-CATATCAAAAAACGCCACTAATGCT
* *
56318203 CCGCAAATAATTAAGCAGAACGCTGTCGTTTAACTTTGACCTGTAGTGGCACTAGCGGTGTTTAT
1 CCGCAAATAATTAAGCAGAACGCCGTCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGTTTAT
*
56318268 CTGGAAATGCCACTAA
66 CTGGAAACGCCACTAA
56318284 TGCTCTGCAA
Statistics
Matches: 286, Mismatches: 43, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
125 285 1.00
126 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (124 bp):
CCGCAAATAATTAAGCAGAACGCCGTCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGTTTAT
CTGGAAACGCCACTAAAGATCTAGCATTTGCGGCCATATCAAAAAACGCCACTAATGCT
Found at i:56318569 original size:166 final size:168
Alignment explanation
Indices: 56318276--56318576 Score: 430
Period size: 166 Copynumber: 1.8 Consensus size: 168
56318266 ATCTGGAAAT
**
56318276 GCCACTAATGCTCTGCAAATAATTAAGCAGAATGATATCATTTAACTTTGATAATATTAGCGGCA
1 GCCACTAATGCTCCACAAATAATTAAGCAGAATGATATCATTTAACTTTGATAATATTAGCGGCA
* *
56318341 CTAGCGGCGTTTATATGAAAACGCCGGTAAAGATCTAGCATTTGTGACGCTTATAGAAAAACGCC
66 CTAGCGGCGTTTATATGAAAACGCCGGTAAAAATCTAGCATTTGAGACGCTTATAGAAAAACGCC
*
56318406 GCTAAAGCTCGGTACATTAGCGACGCTACCATAAAAAC
131 ACTAAAGCTCGGTACATTAGCGACGCTACCATAAAAAC
* * * * ** *
56318444 GCCACTAATGCTCCACAAATAATTAAGCAGAATGCTGTCGTTTAGCTTTGA-CCT-TTAGTGGCA
1 GCCACTAATGCTCCACAAATAATTAAGCAGAATGATATCATTTAACTTTGATAATATTAGCGGCA
* *
56318507 CTAGCGGCGTTTATATGGAAACGCCGGTAAAAATCTAGCATTTGCAG-CGTTTATCA-AAAAACG
66 CTAGCGGCGTTTATATGAAAACGCCGGTAAAAATCTAGCATTTG-AGACGCTTAT-AGAAAAACG
56318570 CCACTAA
129 CCACTAA
56318577 TGATCGATCT
Statistics
Matches: 117, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
166 69 0.59
167 3 0.03
168 45 0.38
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (168 bp):
GCCACTAATGCTCCACAAATAATTAAGCAGAATGATATCATTTAACTTTGATAATATTAGCGGCA
CTAGCGGCGTTTATATGAAAACGCCGGTAAAAATCTAGCATTTGAGACGCTTATAGAAAAACGCC
ACTAAAGCTCGGTACATTAGCGACGCTACCATAAAAAC
Found at i:56319011 original size:22 final size:24
Alignment explanation
Indices: 56318970--56319014 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
56318960 TCTTAGTTAT
56318970 TATTCATGGTTTAACAGGTTAGGC
1 TATTCATGGTTTAACAGGTTAGGC
*
56318994 TATT-ATGGTTTAA-GGGTTAGG
1 TATTCATGGTTTAACAGGTTAGG
56319015 GTTATTGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 7 0.35
23 9 0.45
24 4 0.20
ACGTcount: A:0.24, C:0.07, G:0.29, T:0.40
Consensus pattern (24 bp):
TATTCATGGTTTAACAGGTTAGGC
Found at i:56319020 original size:23 final size:24
Alignment explanation
Indices: 56318969--56319020 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
56318959 GTCTTAGTTA
56318969 TTATTCATGGTTTAACAGGTTAGG
1 TTATTCATGGTTTAACAGGTTAGG
* *
56318993 CTATT-ATGGTTTAA-GGGTTAGGG
1 TTATTCATGGTTTAACAGGTTA-GG
56319016 TTATT
1 TTATT
56319021 GATAAAATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
22 5 0.21
23 15 0.62
24 4 0.17
ACGTcount: A:0.23, C:0.06, G:0.27, T:0.44
Consensus pattern (24 bp):
TTATTCATGGTTTAACAGGTTAGG
Found at i:56319118 original size:13 final size:13
Alignment explanation
Indices: 56319100--56319144 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
56319090 TAGTGTTTAC
56319100 GGTTTATGGTGTA
1 GGTTTATGGTGTA
*
56319113 GGTTTATGGTTTA
1 GGTTTATGGTGTA
56319126 GTGTTTATGGTGTA
1 G-GTTTATGGTGTA
*
56319140 CGTTT
1 GGTTT
56319145 TCAATTTACA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 17 0.61
14 11 0.39
ACGTcount: A:0.13, C:0.02, G:0.33, T:0.51
Consensus pattern (13 bp):
GGTTTATGGTGTA
Found at i:56319187 original size:21 final size:21
Alignment explanation
Indices: 56319163--56319256 Score: 75
Period size: 21 Copynumber: 4.4 Consensus size: 21
56319153 CATGTTGAGT
*
56319163 GTTTAGGGGTGAGGGCTTAAG
1 GTTTAGGGGTTAGGGCTTAAG
*
56319184 GTTTAGGGGTTATAGGCTT-AG
1 GTTTAGGGGTTA-GGGCTTAAG
* *
56319205 GGTCAGGGGTTAGTGGCTTAAG
1 GTTTAGGGGTTAG-GGCTTAAG
* * *
56319227 G-TTACGGGTTTAAGGGTTTAGG
1 GTTTA-GGGGTT-AGGGCTTAAG
56319249 GTTTAGGG
1 GTTTAGGG
56319257 TATAGGGTAT
Statistics
Matches: 58, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
21 30 0.52
22 23 0.40
23 5 0.09
ACGTcount: A:0.18, C:0.05, G:0.44, T:0.33
Consensus pattern (21 bp):
GTTTAGGGGTTAGGGCTTAAG
Found at i:56319264 original size:14 final size:15
Alignment explanation
Indices: 56319232--56319264 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
56319222 TTAAGGTTAC
*
56319232 GGGTTTAAGGGTTTA
1 GGGTTTAAGGGTATA
56319247 GGGTTT-AGGGTATA
1 GGGTTTAAGGGTATA
56319261 GGGT
1 GGGT
56319265 ATAAAAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.18, C:0.00, G:0.45, T:0.36
Consensus pattern (15 bp):
GGGTTTAAGGGTATA
Found at i:56319405 original size:14 final size:14
Alignment explanation
Indices: 56319323--56319406 Score: 57
Period size: 14 Copynumber: 6.1 Consensus size: 14
56319313 CTTATATAGT
56319323 GTTTACGATTTAGG
1 GTTTACGATTTAGG
* *
56319337 GTGTAC-ATTTACG
1 GTTTACGATTTAGG
* *
56319350 GTTTAAAGA-TTAAG
1 GTTT-ACGATTTAGG
* *
56319364 GTTTAGGATATA-G
1 GTTTACGATTTAGG
* *
56319377 TTTTAAGAGTTTAGG
1 GTTTACGA-TTTAGG
56319392 GTTTACGATTTAGG
1 GTTTACGATTTAGG
56319406 G
1 G
56319407 GTTAATGGTT
Statistics
Matches: 53, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
13 19 0.36
14 26 0.49
15 8 0.15
ACGTcount: A:0.27, C:0.05, G:0.27, T:0.40
Consensus pattern (14 bp):
GTTTACGATTTAGG
Found at i:56319469 original size:21 final size:21
Alignment explanation
Indices: 56319445--56319497 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
56319435 GGTTAGGGGC
56319445 TTATGGTTTAGGGTTTAA-ATT
1 TTATGGTTTAGGGTTTAATA-T
*
56319466 TTAT-ATTTGAGGGTTTAATAT
1 TTATGGTTT-AGGGTTTAATAT
*
56319487 TTAGGGTTTAG
1 TTATGGTTTAG
56319498 CTAAAAACAT
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
20 3 0.12
21 19 0.73
22 4 0.15
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.51
Consensus pattern (21 bp):
TTATGGTTTAGGGTTTAATAT
Found at i:56319972 original size:23 final size:23
Alignment explanation
Indices: 56319881--56319980 Score: 87
Period size: 23 Copynumber: 4.3 Consensus size: 23
56319871 TCCCCCAACT
* * *
56319881 CAATTTCCCCAAATTGATTTCCC
1 CAATTTCCCCGATTTCATTTCCC
*
56319904 TAATTT-CCC-ATTTCATATTCTCC
1 CAATTTCCCCGATTTCAT-TTC-CC
* **
56319927 CAATTTCCCTGATTTCAAATCCC
1 CAATTTCCCCGATTTCATTTCCC
*
56319950 CAATTTCCCCGATATCATTTCCC
1 CAATTTCCCCGATTTCATTTCCC
56319973 CAAATTTC
1 C-AATTTC
56319981 GAACTGAGGT
Statistics
Matches: 61, Mismatches: 11, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
21 5 0.08
22 6 0.10
23 34 0.56
24 10 0.16
25 6 0.10
ACGTcount: A:0.25, C:0.34, G:0.03, T:0.38
Consensus pattern (23 bp):
CAATTTCCCCGATTTCATTTCCC
Found at i:56321696 original size:30 final size:31
Alignment explanation
Indices: 56321646--56321703 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 31
56321636 TATTTTAAAG
*
56321646 TTCAAATTTACATAACTTACATAATTTACGA
1 TTCAAATTTACATAAATTACATAATTTACGA
56321677 TTCAAATTT-CATAAATTACATAATTTA
1 TTCAAATTTACATAAATTACATAATTTA
56321704 AATATAATAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
30 17 0.65
31 9 0.35
ACGTcount: A:0.43, C:0.14, G:0.02, T:0.41
Consensus pattern (31 bp):
TTCAAATTTACATAAATTACATAATTTACGA
Found at i:56321819 original size:12 final size:12
Alignment explanation
Indices: 56321802--56321913 Score: 52
Period size: 12 Copynumber: 10.1 Consensus size: 12
56321792 TACATAATGC
56321802 ATAACTTACATA
1 ATAACTTACATA
56321814 ATAACTTAC---
1 ATAACTTACATA
*
56321823 ATAACTTATAT-
1 ATAACTTACATA
*
56321834 ATAAACTTATAT-
1 AT-AACTTACATA
*
56321846 ATAAACTTGC---
1 AT-AACTTACATA
56321856 ATAACTTACATA
1 ATAACTTACATA
56321868 AT-A---ACATA
1 ATAACTTACATA
56321876 ATAACTTACATA
1 ATAACTTACATA
* *
56321888 AT-ACATAGCCTA
1 ATAACTTA-CATA
56321900 CATAACTTACATA
1 -ATAACTTACATA
56321913 A
1 A
56321914 CTTACATGAT
Statistics
Matches: 79, Mismatches: 8, Indels: 26
0.70 0.07 0.23
Matches are distributed among these distances:
8 7 0.09
9 15 0.19
10 2 0.03
11 7 0.09
12 39 0.49
13 5 0.06
14 4 0.05
ACGTcount: A:0.48, C:0.17, G:0.02, T:0.33
Consensus pattern (12 bp):
ATAACTTACATA
Found at i:56321826 original size:9 final size:9
Alignment explanation
Indices: 56321814--56322299 Score: 276
Period size: 9 Copynumber: 54.9 Consensus size: 9
56321804 AACTTACATA
56321814 ATAACTTAC
1 ATAACTTAC
*
56321823 ATAACTTATAT
1 ATAAC-T-TAC
*
56321834 ATAAACTTATAT
1 AT-AAC-T-TAC
*
56321846 ATAAACTTGC
1 ATAA-CTTAC
56321856 ATAACTTAC
1 ATAACTTAC
*
56321865 ATAA-TAAC
1 ATAACTTAC
56321873 ATAATAACTTAC
1 --A-TAACTTAC
56321885 ATAA--TAC
1 ATAACTTAC
* *
56321892 ATAGCCTAC
1 ATAACTTAC
56321901 ATAACTTAC
1 ATAACTTAC
56321910 ATAACTTAC
1 ATAACTTAC
*
56321919 ATGA--TAC
1 ATAACTTAC
*
56321926 ACAACTTATTAC
1 ATAAC---TTAC
*
56321938 ATAACTTAA
1 ATAACTTAC
56321947 ATAACTTA-
1 ATAACTTAC
56321955 ATAA--TAC
1 ATAACTTAC
*
56321962 ATAACTTTC
1 ATAACTTAC
56321971 ATAACTTAC
1 ATAACTTAC
*
56321980 ATTA--TAC
1 ATAACTTAC
*
56321987 ACAACTTAC
1 ATAACTTAC
56321996 ATAACTTA-
1 ATAACTTAC
* *
56322004 ATTAATATTAT
1 A-TAA-CTTAC
56322015 ATAGAACTTAC
1 AT--AACTTAC
56322026 ATAA--TAC
1 ATAACTTAC
* *
56322033 ATTACGTAC
1 ATAACTTAC
56322042 ATAACTTAC
1 ATAACTTAC
*
56322051 ATTA--TAC
1 ATAACTTAC
*
56322058 ACAACTTAC
1 ATAACTTAC
*
56322067 ATAACTTAT
1 ATAACTTAC
* *
56322076 TTAATATTATAC
1 AT-A-ACT-TAC
56322088 ATAACTTAC
1 ATAACTTAC
56322097 ATAA--TAC
1 ATAACTTAC
*
56322104 ATAACTTAT
1 ATAACTTAC
56322113 ATAACTTAC
1 ATAACTTAC
56322122 ATAACTTAC
1 ATAACTTAC
56322131 ATAACTTAC
1 ATAACTTAC
56322140 --AACTTAC
1 ATAACTTAC
*
56322147 ATAACTTAG
1 ATAACTTAC
*
56322156 ATACATTATAC
1 ATA-ACT-TAC
*
56322167 AGAACTTAC
1 ATAACTTAC
56322176 ATAACTTAC
1 ATAACTTAC
*
56322185 ATAGCTTAC
1 ATAACTTAC
*
56322194 AT-TC-TAC
1 ATAACTTAC
*
56322201 ATAACATAC
1 ATAACTTAC
*
56322210 ATAACATAC
1 ATAACTTAC
56322219 ATAA--TAC
1 ATAACTTAC
56322226 ATAACTTAC
1 ATAACTTAC
56322235 ATAA--TAC
1 ATAACTTAC
56322242 ATAGA-TTAC
1 ATA-ACTTAC
56322251 ATAA--TAC
1 ATAACTTAC
*
56322258 ACAACTTAC
1 ATAACTTAC
*
56322267 ATAGCTTAC
1 ATAACTTAC
56322276 ATAA--TAC
1 ATAACTTAC
56322283 ATAACTTAC
1 ATAACTTAC
*
56322292 ATAGCTTA
1 ATAACTTA
56322300 ATTATACTTA
Statistics
Matches: 377, Mismatches: 52, Indels: 96
0.72 0.10 0.18
Matches are distributed among these distances:
6 2 0.01
7 76 0.20
8 12 0.03
9 218 0.58
10 19 0.05
11 23 0.06
12 27 0.07
ACGTcount: A:0.46, C:0.19, G:0.02, T:0.34
Consensus pattern (9 bp):
ATAACTTAC
Found at i:56321881 original size:20 final size:19
Alignment explanation
Indices: 56321856--56321894 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
56321846 ATAAACTTGC
56321856 ATAACTTACATAATAACATA
1 ATAACTTACATAAT-ACATA
56321876 ATAACTTACATAATACATA
1 ATAACTTACATAATACATA
56321895 GCCTACATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (19 bp):
ATAACTTACATAATACATA
Found at i:56321907 original size:54 final size:53
Alignment explanation
Indices: 56321792--56321920 Score: 140
Period size: 54 Copynumber: 2.4 Consensus size: 53
56321782 ATAAACTAAT
* * *
56321792 TACATAA--TGCATAACTTACATAATAACTTACATAACTTATATATAAACTTA
1 TACATAACTTGCATAACTTACATAATAACATACATAACTTACATATAAACATA
* *
56321843 TATATAAACTTGCATAACTTACATAATAACATA-ATAACTTACATA-ATACATA
1 TACAT-AACTTGCATAACTTACATAATAACATACATAACTTACATATAAACATA
*
56321895 GCCTACATAACTTACATAACTTACAT
1 ---TACATAACTTGCATAACTTACAT
56321921 GATACACAAC
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
51 4 0.06
52 7 0.11
53 11 0.17
54 39 0.60
55 4 0.06
ACGTcount: A:0.47, C:0.18, G:0.02, T:0.33
Consensus pattern (53 bp):
TACATAACTTGCATAACTTACATAATAACATACATAACTTACATATAAACATA
Found at i:56321939 original size:37 final size:34
Alignment explanation
Indices: 56321868--56322279 Score: 111
Period size: 34 Copynumber: 12.4 Consensus size: 34
56321858 AACTTACATA
* * * *
56321868 ATAACATA-ATAACTTACATAATACATAGC-CTAC
1 ATAACTTACATAACTTA-ATAATACACAACTTTAC
*
56321901 ATAACTTACATAACTTACATGATACACAACTTATTAC
1 ATAACTTACATAACTTA-ATAATACACAAC-T-TTAC
* *
56321938 ATAACTTAAATAACTTAATAATACATAACTTT-C
1 ATAACTTACATAACTTAATAATACACAACTTTAC
56321971 ATAACTTAC---A--T--T-ATACACAAC-TTAC
1 ATAACTTACATAACTTAATAATACACAACTTTAC
* *
56321996 ATAACTTA-ATTAATATTATATAGA-ACTTAC-A-TAATAC
1 ATAACTTACA-TAA-CTTA-ATA-ATAC--ACAACT-TTAC
* * *
56322033 ATTACGTACATAACTTACATTATACACAAC-TTAC
1 ATAACTTACATAACTTA-ATAATACACAACTTTAC
** * *
56322067 ATAACTTATTTAA--T-ATTATACATAAC-TTAC
1 ATAACTTACATAACTTAATAATACACAACTTTAC
*
56322097 ATAA--TACATAACTTATATAACTTACATAAC-TTAC
1 ATAACTTACATAACTTA-ATAA--TACACAACTTTAC
* *
56322131 ATAACTTAC--AACTTACATAACTTAGA-TACATTATAC
1 ATAACTTACATAACTTA-ATAA--TACACAAC-TT-TAC
* * *
56322167 AGAACTTACATAACTTACATAGCT-TAC-A-TTCTAC
1 ATAACTTACATAACTTA-ATA-ATACACAACTT-TAC
* * *
56322201 ATAACATACATAACATACATAATACATAAC-TTAC
1 ATAACTTACATAACTTA-ATAATACACAACTTTAC
56322235 ATAA--TACATAGA-TTACATAATACACAAC-TTAC
1 ATAACTTACATA-ACTTA-ATAATACACAACTTTAC
*
56322267 ATAGCTTACATAA
1 ATAACTTACATAA
56322280 TACATAACTT
Statistics
Matches: 292, Mismatches: 41, Indels: 92
0.69 0.10 0.22
Matches are distributed among these distances:
24 2 0.01
25 17 0.06
26 1 0.00
28 7 0.02
30 21 0.07
31 1 0.00
32 31 0.11
33 21 0.07
34 103 0.35
35 8 0.03
36 35 0.12
37 34 0.12
38 11 0.04
ACGTcount: A:0.46, C:0.19, G:0.02, T:0.33
Consensus pattern (34 bp):
ATAACTTACATAACTTAATAATACACAACTTTAC
Found at i:56322051 original size:71 final size:71
Alignment explanation
Indices: 56321949--56322303 Score: 308
Period size: 71 Copynumber: 4.8 Consensus size: 71
56321939 TAACTTAAAT
*
56321949 AACTTA-ATAATACATAACTTTCATAACTTACATTATACACAACTTACATAACTTAATTAATATT
1 AACTTACATAATACATAACTTACATAACTTACATTATACACAACTTACATAACTTAATTAATATT
*
56322013 ATATAG
66 ATACAG
* * *
56322019 AACTTACATAATACATTACGTACATAACTTACATTATACACAACTTACATAACTTATTTAATATT
1 AACTTACATAATACATAACTTACATAACTTACATTATACACAACTTACATAACTTAATTAATATT
*
56322084 ATACAT
66 ATACAG
* * * * *
56322090 AACTTACATAATACATAACTTATATAACTTACATAACTTACATAACTTACAACTTACATAACTTA
1 AACTTACATAATACATAACTTACATAACTTACATTA--TACACAACTTAC-A-TAACTTAA-TTA
56322155 GATACATTATACAG
61 -AT--ATTATACAG
* * * * * *
56322169 AACTTACATAACTTACATAGCTTACAT-TC-TACATAACATACATAACATACATAATACATAACT
1 AACTTACATAA--TACATAACTTACATAACTTACAT--TATACACAACTTACAT-A-ACTTAA-T
*
56322232 TACATA--ATACAT
59 TA-ATATTATACAG
* * * * *
56322244 AGA-TTACATAATACACAACTTACATAGCTTACATAATACATAACTTACATAGCTTAATTA
1 A-ACTTACATAATACATAACTTACATAACTTACATTATACACAACTTACATAACTTAATTA
56322304 TACTTATTCA
Statistics
Matches: 237, Mismatches: 30, Indels: 36
0.78 0.10 0.12
Matches are distributed among these distances:
70 9 0.04
71 94 0.40
72 1 0.00
73 37 0.16
74 2 0.01
75 24 0.10
76 4 0.02
77 4 0.02
78 1 0.00
79 47 0.20
80 1 0.00
81 13 0.05
ACGTcount: A:0.45, C:0.19, G:0.02, T:0.34
Consensus pattern (71 bp):
AACTTACATAATACATAACTTACATAACTTACATTATACACAACTTACATAACTTAATTAATATT
ATACAG
Found at i:56322284 original size:32 final size:31
Alignment explanation
Indices: 56322206--56322286 Score: 92
Period size: 32 Copynumber: 2.5 Consensus size: 31
56322196 TCTACATAAC
* *
56322206 ATACATAACATACATAATACATAACTTACATA
1 ATACAT-AGATACATAATACACAACTTACATA
56322238 ATACATAGATTACATAATACACAACTTACATA
1 ATACATAGA-TACATAATACACAACTTACATA
*
56322270 GCTTACATA-ATACATAA
1 --ATACATAGATACATAA
56322287 CTTACATAGC
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
31 2 0.05
32 34 0.79
33 1 0.02
34 6 0.14
ACGTcount: A:0.51, C:0.19, G:0.02, T:0.28
Consensus pattern (31 bp):
ATACATAGATACATAATACACAACTTACATA
Found at i:56322294 original size:16 final size:16
Alignment explanation
Indices: 56321855--56322269 Score: 164
Period size: 16 Copynumber: 24.8 Consensus size: 16
56321845 TATAAACTTG
56321855 CATAACTTACATAATAA
1 CATAACTTACATAAT-A
56321872 CATAATAACTTACATAATA
1 C---ATAACTTACATAATA
* *
56321891 CATAGCCTACATAACTTA
1 CATAACTTACATAA--TA
*
56321909 CATAACTTACATGATA
1 CATAACTTACATAATA
*
56321925 CACAACTT--AT--TA
1 CATAACTTACATAATA
*
56321937 CATAACTTAAATAACTTA
1 CATAACTTACATAA--TA
*
56321955 -ATAA--TACATAACTTT
1 CATAACTTACATAA--TA
*
56321970 CATAACTTACATTATA
1 CATAACTTACATAATA
*
56321986 CACAACTTACAT-A-A
1 CATAACTTACATAATA
*
56322000 CTTAA-TTA-ATATTATA
1 CATAACTTACATA--ATA
* *
56322016 TAGAACTTACATAATA
1 CATAACTTACATAATA
* *
56322032 CATTACGTACATAACTTA
1 CATAACTTACATAA--TA
* *
56322050 CATTA--TACACAACTTA
1 CATAACTTACATAA--TA
*
56322066 CATAACTTATTTAATATTATA
1 CATAACTTA---CATA--ATA
56322087 CATAACTTACATAATA
1 CATAACTTACATAATA
*
56322103 CATAACTTATATAACTTA
1 CATAACTTACATAA--TA
56322121 CATAACTTACATAACTTA
1 CATAACTTACATAA--TA
56322139 C--AACTTACATAACTTA
1 CATAACTTACATAA--TA
* * *
56322155 GATACATTATACAGAACTTA
1 CATA-ACT-TACATAA--TA
*
56322175 CATAACTTACATAGCTTA
1 CATAACTTACATA--ATA
*
56322193 CAT-TC-TACATAACATA
1 CATAACTTACAT-A-ATA
*
56322209 CATAACATACATAATA
1 CATAACTTACATAATA
56322225 CATAACTTACATAATA
1 CATAACTTACATAATA
56322241 CATAGA-TTACATAATA
1 CATA-ACTTACATAATA
*
56322257 CACAACTTACATA
1 CATAACTTACATA
56322270 GCTTACATAA
Statistics
Matches: 316, Mismatches: 40, Indels: 85
0.72 0.09 0.19
Matches are distributed among these distances:
12 11 0.03
13 3 0.01
14 8 0.03
15 12 0.04
16 150 0.47
17 13 0.04
18 72 0.23
19 6 0.02
20 27 0.09
21 13 0.04
23 1 0.00
ACGTcount: A:0.46, C:0.19, G:0.02, T:0.33
Consensus pattern (16 bp):
CATAACTTACATAATA
Found at i:56322299 original size:25 final size:25
Alignment explanation
Indices: 56321849--56322286 Score: 171
Period size: 25 Copynumber: 16.8 Consensus size: 25
56321839 CTTATATATA
*
56321849 AACTTGCATAACTTACATAATAACATAAT
1 AACTTACATAACTTACATAAT-AC---AT
*
56321878 AACTTACATAA--TACATAGCCTACAT
1 AACTTACATAACTTACATA--ATACAT
* *
56321903 AACTTACATAACTTACATGATACAC
1 AACTTACATAACTTACATAATACAT
*
56321928 AACTTATTACATAACTTAAATAACTTA-AT
1 AAC---TTACATAACTTACATAA--TACAT
*
56321957 AA--TACATAACTTTCATAACTTACAT
1 AACTTACATAACTTACATAA--TACAT
* *
56321982 TA--TACACAACTTACATAACTTA-ATT
1 AACTTACATAACTTACATAA--TACA-T
* *
56322007 AATATTATATAGAACTTACATAATACAT
1 AA-CTTACAT--AACTTACATAATACAT
* * * *
56322035 TACGTACATAACTTACATTATACAC
1 AACTTACATAACTTACATAATACAT
*
56322060 AACTTACATAACTTATTTAATATTATACAT
1 AACTTACATAACTTA---CATA--ATACAT
*
56322090 AACTTACATAA--TACATAACTTATAT
1 AACTTACATAACTTACATAA--TACAT
56322115 AACTTACATAACTTACATAACTTAC--
1 AACTTACATAACTTACATAA--TACAT
* *
56322140 AACTTACATAACTTAGATACATTATACAG
1 AACTTACATAAC-T---TACATAATACAT
*
56322169 AACTTACATAACTTACATAGCTTACAT
1 AACTTACATAACTTACATA--ATACAT
* *
56322196 -TC-TACATAACATACATAACATACAT
1 AACTTACATAACTTACAT-A-ATACAT
56322221 AA--TACATAACTTACATAATACAT
1 AACTTACATAACTTACATAATACAT
*
56322244 AGA-TTACATAA--TACACAACTTACAT
1 A-ACTTACATAACTTACATAA--TACAT
*
56322269 AGCTTACATAA--TACATAA
1 AACTTACATAACTTACATAA
56322287 CTTACATAGC
Statistics
Matches: 326, Mismatches: 42, Indels: 86
0.72 0.09 0.19
Matches are distributed among these distances:
23 14 0.04
24 21 0.06
25 164 0.50
26 3 0.01
27 33 0.10
28 29 0.09
29 33 0.10
30 29 0.09
ACGTcount: A:0.46, C:0.19, G:0.02, T:0.33
Consensus pattern (25 bp):
AACTTACATAACTTACATAATACAT
Found at i:56327899 original size:21 final size:21
Alignment explanation
Indices: 56327875--56327925 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
56327865 GGCAACGAGG
56327875 GAAGCAGAGGC-AGCAGTGAGA
1 GAAGCAGAGGCTA-CAGTGAGA
*
56327896 GAAGCAGAGGCTACAGTGAGG
1 GAAGCAGAGGCTACAGTGAGA
56327917 GAAGCAGAG
1 GAAGCAGAG
56327926 TAGAGCAGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
21 27 0.96
22 1 0.04
ACGTcount: A:0.37, C:0.14, G:0.43, T:0.06
Consensus pattern (21 bp):
GAAGCAGAGGCTACAGTGAGA
Found at i:56328324 original size:43 final size:42
Alignment explanation
Indices: 56328276--56328628 Score: 319
Period size: 43 Copynumber: 8.2 Consensus size: 42
56328266 ATAGTCTTTC
* **
56328276 GCGGCGTTTGTGTGAAAAGCACCGCCAAAGGTCTTGGCCTATA
1 GCGGCGTTTGTG-GAAAAGCACCGCTAAAGGTCTTGATCTATA
* *** *
56328319 GCGGCGTTTTTGGAAAAAGTGTCGCTAAAGGTCATGATCTATA
1 GCGGCGTTTGTGG-AAAAGCACCGCTAAAGGTCTTGATCTATA
* ** ** ** *
56328362 GCAGCGTTTGTAAACAAAGCGTCAATAAAGGTCTTGAGCTATA
1 GCGGCGTTTGTGGA-AAAGCACCGCTAAAGGTCTTGATCTATA
*
56328405 GCGGCGTTTGTGGAAAAAGCACAGCTAAAGGTCTTGATCTATA
1 GCGGCGTTTGTGG-AAAAGCACCGCTAAAGGTCTTGATCTATA
*
56328448 GCGGCGTTTGTGGGAAAGGCACCGCTAAAGGTCTTGATCTATA
1 GCGGCGTTTGT-GGAAAAGCACCGCTAAAGGTCTTGATCTATA
* * ** * * * *
56328491 GCGGCATTTTTGGAAAAAAGTGCCGTTACAGATCTTGAGCTATA
1 GCGGCGTTTGTGG--AAAAGCACCGCTAAAGGTCTTGATCTATA
** * * * *
56328535 ATGGCGTTTGTGTAAAAGCGCCCCTAAAGGTCCTGATCTATA
1 GCGGCGTTTGTGGAAAAGCACCGCTAAAGGTCTTGATCTATA
* *
56328577 GCGGCGTTTCTGGAAGAAGCACCGCTAAAGGTCATGATCTATA
1 GCGGCGTTTGTGGAA-AAGCACCGCTAAAGGTCTTGATCTATA
*
56328620 GTGGCGTTT
1 GCGGCGTTT
56328629 ATTTCTAAAA
Statistics
Matches: 246, Mismatches: 57, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
42 37 0.15
43 176 0.72
44 33 0.13
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (42 bp):
GCGGCGTTTGTGGAAAAGCACCGCTAAAGGTCTTGATCTATA
Found at i:56328552 original size:129 final size:128
Alignment explanation
Indices: 56328277--56328620 Score: 386
Period size: 129 Copynumber: 2.7 Consensus size: 128
56328267 TAGTCTTTCG
* ** * * ***
56328277 CGGCGTTTGTGTGAAAAGCACCGCCAAAGGTCTTGGCCTATAGCGGCGTTTTTGGAAAAAGTGTC
1 CGGCGTTTGTGT-AAAAGCACCGCTAAAGGTCTTGATCTATAGCGGCGTTTCTGGGAAAAGCACC
* * * *
56328342 GCTAAAGGTCATGATCTATAGCAGCGTTTGTAAACAAAGCGTCAATAAAGGTCTTGAGCTATAG
65 GCTAAAGGTCATGATCTATAGCAGCGTTTGGAAACAAAGCGCCAATAAAGATCTTGAGCTATAA
* * * *
56328406 CGGCGTTTGTGGAAAAAGCACAGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAAAGGCACC
1 CGGCGTTTGT-GTAAAAGCACCGCTAAAGGTCTTGATCTATAGCGGCGTTTCTGGGAAAAGCACC
* * * * ** *
56328471 GCTAAAGGTCTTGATCTATAGCGGCATTTTTGGAAA-AAAGTGCCGTTACAGATCTTGAGCTATA
65 GCTAAAGGTCATGATCTATAGCAGC--GTTTGGAAACAAAGCGCCAATAAAGATCTTGAGCTATA
56328535 A
128 A
* * * *
56328536 TGGCGTTTGTGTAAAAGCGCCCCTAAAGGTCCTGATCTATAGCGGCGTTTCT-GGAAGAAGCACC
1 CGGCGTTTGTGTAAAAGCACCGCTAAAGGTCTTGATCTATAGCGGCGTTTCTGGGAA-AAGCACC
56328600 GCTAAAGGTCATGATCTATAG
65 GCTAAAGGTCATGATCTATAG
56328621 TGGCGTTTAT
Statistics
Matches: 180, Mismatches: 31, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
128 4 0.02
129 137 0.76
130 32 0.18
131 7 0.04
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.26
Consensus pattern (128 bp):
CGGCGTTTGTGTAAAAGCACCGCTAAAGGTCTTGATCTATAGCGGCGTTTCTGGGAAAAGCACCG
CTAAAGGTCATGATCTATAGCAGCGTTTGGAAACAAAGCGCCAATAAAGATCTTGAGCTATAA
Found at i:56329264 original size:16 final size:16
Alignment explanation
Indices: 56329243--56329298 Score: 85
Period size: 16 Copynumber: 3.5 Consensus size: 16
56329233 CGTTTGGTTC
56329243 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
* *
56329259 GCTGTAATTGAAGAGA
1 GCTGTAATGGAATAGA
56329275 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
*
56329291 GTTGTAAT
1 GCTGTAAT
56329299 AAGTAATTCA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.36, C:0.05, G:0.30, T:0.29
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:56329373 original size:44 final size:46
Alignment explanation
Indices: 56329280--56329373 Score: 122
Period size: 44 Copynumber: 2.1 Consensus size: 46
56329270 AGAGAGCTGT
** *
56329280 AATGGAATAGAGTTGTAATAAGTAATTCAATTGTTTGGTTGAATTG
1 AATGGAATAGAACTGTAATAAGTAATTCAATTGTTTGGTTGAATGG
*
56329326 AATGGAATAGAACTGTAAT-AGT-ATTC-TTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAAGTAATTCAAT-TGTTTGGTTGAATGG
56329370 AATG
1 AATG
56329374 ATGTTGTACT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 1 0.02
44 22 0.51
45 3 0.07
46 17 0.40
ACGTcount: A:0.33, C:0.03, G:0.26, T:0.38
Consensus pattern (46 bp):
AATGGAATAGAACTGTAATAAGTAATTCAATTGTTTGGTTGAATGG
Found at i:56329571 original size:37 final size:37
Alignment explanation
Indices: 56329491--56329588 Score: 103
Period size: 37 Copynumber: 2.7 Consensus size: 37
56329481 AAAATAATAA
* * *
56329491 ATAATTTAATCATATT-TTAACATAATTATTATTAAAT
1 ATAATTTAATAAAATTCTTAATATAATTATTATT-AAT
*
56329528 ATAATTTAATAAAATTCTTAATATAATTATTCTT-AT
1 ATAATTTAATAAAATTCTTAATATAATTATTATTAAT
* *
56329564 ATGAATTTACTAAAA-TCATAATATA
1 AT-AATTTAATAAAATTCTTAATATA
56329589 TAATACTATA
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
36 13 0.25
37 25 0.47
38 15 0.28
ACGTcount: A:0.47, C:0.06, G:0.01, T:0.46
Consensus pattern (37 bp):
ATAATTTAATAAAATTCTTAATATAATTATTATTAAT
Found at i:56329596 original size:21 final size:21
Alignment explanation
Indices: 56329571--56329613 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
56329561 TATATGAATT
56329571 TACTA-AAATCATAATATATAA
1 TACTATAAA-CATAATATATAA
*
56329592 TACTATAAAGATAATATATAA
1 TACTATAAACATAATATATAA
56329613 T
1 T
56329614 CTACTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.35
Consensus pattern (21 bp):
TACTATAAACATAATATATAA
Found at i:56330281 original size:24 final size:24
Alignment explanation
Indices: 56330248--56330298 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
56330238 AATACAAGCA
56330248 TCAAGACAATAGTTTAATACATCC
1 TCAAGACAATAGTTTAATACATCC
*
56330272 TCAAGGCAATAGTTTAATACATCC
1 TCAAGACAATAGTTTAATACATCC
56330296 TCA
1 TCA
56330299 TGATACTCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (24 bp):
TCAAGACAATAGTTTAATACATCC
Found at i:56334419 original size:24 final size:24
Alignment explanation
Indices: 56334392--56334454 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 24
56334382 ATAATTTAGC
*
56334392 CATTTTTATTTTTATTATAATTTT
1 CATTTTTATTTTAATTATAATTTT
* * *
56334416 CATTTTTAGTTTAATTTTTATTTT
1 CATTTTTATTTTAATTATAATTTT
56334440 CTAATTTTTATTTTA
1 C--ATTTTTATTTTA
56334455 TTTGCTTCTG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 21 0.66
26 11 0.34
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.70
Consensus pattern (24 bp):
CATTTTTATTTTAATTATAATTTT
Found at i:56334420 original size:18 final size:18
Alignment explanation
Indices: 56334393--56334439 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
56334383 TAATTTAGCC
56334393 ATTTTTATTTTTA-TTATA
1 ATTTTTATTTTTAGTT-TA
*
56334411 ATTTTCATTTTTAGTTTA
1 ATTTTTATTTTTAGTTTA
56334429 ATTTTTATTTT
1 ATTTTTATTTT
56334440 CTAATTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 24 0.92
19 2 0.08
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.72
Consensus pattern (18 bp):
ATTTTTATTTTTAGTTTA
Found at i:56334435 original size:7 final size:6
Alignment explanation
Indices: 56334393--56334457 Score: 60
Period size: 6 Copynumber: 10.7 Consensus size: 6
56334383 TAATTTAGCC
* * * * *
56334393 ATTTTT ATTTTT ATTATA ATTTTC ATTTTT AGTTTA ATTTTT ATTTTCT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTT-T
56334442 AATTTTT A-TTTT ATTT
1 -ATTTTT ATTTTT ATTT
56334458 GCTTCTGGCA
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
5 5 0.11
6 35 0.74
7 2 0.04
8 5 0.11
ACGTcount: A:0.23, C:0.03, G:0.02, T:0.72
Consensus pattern (6 bp):
ATTTTT
Found at i:56334446 original size:14 final size:14
Alignment explanation
Indices: 56334427--56334453 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
56334417 ATTTTTAGTT
56334427 TAATTTTTATTTTC
1 TAATTTTTATTTTC
56334441 TAATTTTTATTTT
1 TAATTTTTATTTT
56334454 ATTTGCTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (14 bp):
TAATTTTTATTTTC
Found at i:56336905 original size:22 final size:22
Alignment explanation
Indices: 56336880--56336936 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
56336870 TACCCTTTTC
* *
56336880 TTTATTTTATTTTCTTTTATTT
1 TTTATTTTATTTTCTTATATTA
*
56336902 TTTATTATT-TTTTGTTATATTA
1 TTTATT-TTATTTTCTTATATTA
56336924 TTTATTTTTATTT
1 TTTA-TTTTATTT
56336937 GAATAATATA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 22 0.76
23 7 0.24
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.79
Consensus pattern (22 bp):
TTTATTTTATTTTCTTATATTA
Found at i:56336934 original size:15 final size:15
Alignment explanation
Indices: 56336895--56336934 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
56336885 TTTATTTTCT
56336895 TTTATTTTT-TATTA
1 TTTATTTTTATATTA
56336909 TTT-TTTGTTATATTA
1 TTTATTT-TTATATTA
56336924 TTTATTTTTAT
1 TTTATTTTTAT
56336935 TTGAATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 3 0.13
14 5 0.22
15 12 0.52
16 3 0.13
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.78
Consensus pattern (15 bp):
TTTATTTTTATATTA
Found at i:56336936 original size:10 final size:9
Alignment explanation
Indices: 56336884--56336932 Score: 53
Period size: 10 Copynumber: 5.1 Consensus size: 9
56336874 CTTTTCTTTA
56336884 TTTTATTTT
1 TTTTATTTT
56336893 CTTTTATTTT
1 -TTTTATTTT
56336903 TTATTATTTT
1 TT-TTATTTT
*
56336913 TTGTTATATT
1 TT-TTATTTT
*
56336923 ATTTATTTT
1 TTTTATTTT
56336932 T
1 T
56336933 ATTTGAATAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
9 8 0.24
10 25 0.76
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (9 bp):
TTTTATTTT
Found at i:56336964 original size:36 final size:35
Alignment explanation
Indices: 56336875--56336966 Score: 96
Period size: 36 Copynumber: 2.6 Consensus size: 35
56336865 CCTTTTACCC
** * *
56336875 TTTTCTTTATTTTATTT-TCTTTTATTTTTTATTATT
1 TTTTC-TTATTTTATTTAT-TTTTATTTAATAATATA
* *
56336911 TTTTGTTATATTATTTATTTTTATTTGAATAATATA
1 TTTTCTTATTTTATTTATTTTTATTT-AATAATATA
56336947 TTTTCTTATTTTATTTATTT
1 TTTTCTTATTTTATTTATTT
56336967 GTTTTATTAT
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
35 18 0.39
36 28 0.61
ACGTcount: A:0.21, C:0.03, G:0.02, T:0.74
Consensus pattern (35 bp):
TTTTCTTATTTTATTTATTTTTATTTAATAATATA
Found at i:56341564 original size:16 final size:16
Alignment explanation
Indices: 56341543--56341587 Score: 81
Period size: 16 Copynumber: 2.8 Consensus size: 16
56341533 TTTGTAAGTT
56341543 CAGGCTTTATGCCTAG
1 CAGGCTTTATGCCTAG
56341559 CAGGCTTTATGCCTAG
1 CAGGCTTTATGCCTAG
*
56341575 CAGGCTTTGTGCC
1 CAGGCTTTATGCC
56341588 AGTGAATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.16, C:0.27, G:0.27, T:0.31
Consensus pattern (16 bp):
CAGGCTTTATGCCTAG
Found at i:56341620 original size:41 final size:41
Alignment explanation
Indices: 56341563--56341669 Score: 133
Period size: 41 Copynumber: 2.6 Consensus size: 41
56341553 GCCTAGCAGG
*
56341563 CTTTATGCCTAGCAGGCTTTGTGCCAGTGAATTATATCAGA
1 CTTTATGCCTAGCAGGCTTTGTGCCAGTGAAATATATCAGA
* ** * * *
56341604 CTTTATGTCTAGCAGGCTTTGTGCGGGTGAAATGTATCGGG
1 CTTTATGCCTAGCAGGCTTTGTGCCAGTGAAATATATCAGA
* *
56341645 CTTTGTGCCTAGCAGGCTTTATGCC
1 CTTTATGCCTAGCAGGCTTTGTGCC
56341670 GGTGTTTTAT
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 55 1.00
ACGTcount: A:0.19, C:0.20, G:0.27, T:0.35
Consensus pattern (41 bp):
CTTTATGCCTAGCAGGCTTTGTGCCAGTGAAATATATCAGA
Found at i:56343756 original size:21 final size:22
Alignment explanation
Indices: 56343732--56343777 Score: 76
Period size: 23 Copynumber: 2.1 Consensus size: 22
56343722 TAAATATATA
56343732 TATACATGT-ATATTTATTTTT
1 TATACATGTAATATTTATTTTT
56343753 TATACATGTACATATTTATTTTT
1 TATACATGTA-ATATTTATTTTT
56343776 TA
1 TA
56343778 ACTAATATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 9 0.39
23 14 0.61
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.59
Consensus pattern (22 bp):
TATACATGTAATATTTATTTTT
Found at i:56343804 original size:53 final size:51
Alignment explanation
Indices: 56343712--56343823 Score: 127
Period size: 53 Copynumber: 2.2 Consensus size: 51
56343702 ATAAAGTAAG
** *
56343712 TATTATTTTTTAAATATATATATACATGTATATTTATTTTTTATACATGTACA
1 TATTATTTTTTAAATATATATATACATACATATATATTTTTT-TA-ATGTACA
* * * *
56343765 TATTTATTTTTTAACTA-ATATTTTCATACATATATATTTTTTTAATGTAGA
1 TA-TTATTTTTTAAATATATATATACATACATATATATTTTTTTAATGTACA
56343816 TATTATTT
1 TATTATTT
56343824 AATTATTTTT
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
50 6 0.12
51 8 0.16
52 2 0.04
53 22 0.43
54 13 0.25
ACGTcount: A:0.34, C:0.05, G:0.04, T:0.57
Consensus pattern (51 bp):
TATTATTTTTTAAATATATATATACATACATATATATTTTTTTAATGTACA
Found at i:56345017 original size:24 final size:23
Alignment explanation
Indices: 56344984--56345184 Score: 75
Period size: 24 Copynumber: 8.7 Consensus size: 23
56344974 AACACTGCCC
*
56344984 ATTTGTTGTATATATGCTGTTAA
1 ATTTGGTGTATATATGCTGTTAA
* * * *
56345007 ATTTTGGTGTAAAAATGCTGCTCA
1 A-TTTGGTGTATATATGCTGTTAA
*** ****
56345031 ATTTGGTACGTATATGCT-ACCC
1 ATTTGGTGTATATATGCTGTTAA
*
56345053 ATTTGTTGTATATATGCTGTTAA
1 ATTTGGTGTATATATGCTGTTAA
* * ** *
56345076 ATTTTGGTGTAAAAATGCTACTCA
1 A-TTTGGTGTATATATGCTGTTAA
** * * ***
56345100 ATTTGGCATGTATATCCTG-CCC
1 ATTTGGTGTATATATGCTGTTAA
*
56345122 ATTTGTTGTATATATGCTGTTAA
1 ATTTGGTGTATATATGCTGTTAA
* *
56345145 ATTTTGGTGTA-AAAGTGTTGTTAA
1 A-TTTGGTGTATATA-TGCTGTTAA
* *
56345169 ATTTGGTATGTATATG
1 ATTTGGTGTATATATG
56345185 TTGCCCATTT
Statistics
Matches: 121, Mismatches: 50, Indels: 14
0.65 0.27 0.08
Matches are distributed among these distances:
22 30 0.25
23 37 0.31
24 54 0.45
ACGTcount: A:0.26, C:0.10, G:0.19, T:0.44
Consensus pattern (23 bp):
ATTTGGTGTATATATGCTGTTAA
Found at i:56345062 original size:69 final size:69
Alignment explanation
Indices: 56344978--56345210 Score: 367
Period size: 69 Copynumber: 3.4 Consensus size: 69
56344968 GGTTTCAACA
*
56344978 CTGCCCATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAATGCTGCTCAATTTGGTACGTA
1 CTGCCCATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAATGCTGCTCAATTTGGTATGTA
56345043 TATG
66 TATG
* * *
56345047 CTACCCATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAATGCTACTCAATTTGGCATGTA
1 CTGCCCATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAATGCTGCTCAATTTGGTATGTA
*
56345112 TATC
66 TATG
* * * *
56345116 CTGCCCATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGTTGTTAAATTTGGTATGTA
1 CTGCCCATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAATGCTGCTCAATTTGGTATGTA
56345181 TATG
66 TATG
* *
56345185 TTGCCCATTTGTTGTATATAAGCTGT
1 CTGCCCATTTGTTGTATATATGCTGT
56345211 CCAAATTGAT
Statistics
Matches: 149, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
69 149 1.00
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.44
Consensus pattern (69 bp):
CTGCCCATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAATGCTGCTCAATTTGGTATGTA
TATG
Found at i:56346275 original size:15 final size:15
Alignment explanation
Indices: 56346251--56346292 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
56346241 CCTTTTACCC
56346251 TTTTGTTTATTTTATT
1 TTTTG-TTATTTTATT
*
56346267 TTTTGTTATATTATT
1 TTTTGTTATTTTATT
56346282 TATTT-TTATTT
1 T-TTTGTTATTT
56346293 GAATAATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 15 0.65
16 8 0.35
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.79
Consensus pattern (15 bp):
TTTTGTTATTTTATT
Found at i:56346490 original size:6 final size:6
Alignment explanation
Indices: 56346481--56346519 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
56346471 TTCGTTTTAG
* * *
56346481 TTATTT TTATTT TTATCT TTATTT TTAATT TTGTTT TTA
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTA
56346520 GCTGCTTCTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.77
Consensus pattern (6 bp):
TTATTT
Found at i:56352531 original size:27 final size:27
Alignment explanation
Indices: 56352501--56352679 Score: 238
Period size: 27 Copynumber: 6.6 Consensus size: 27
56352491 CACCCCATAG
* *
56352501 GGGTATTTCGATCATTTTATCCTTCGA
1 GGGTAATTCGATCATTTTACCCTTCGA
*
56352528 GGGTAATTC-AGTAATTTTACCCTTCG-
1 GGGTAATTCGA-TCATTTTACCCTTCGA
* * *
56352554 GAGCTAATTCGGTCATTTTACCCTTCGG
1 G-GGTAATTCGATCATTTTACCCTTCGA
56352582 GGGTAATTCGATCATTTTACCCTTC-A
1 GGGTAATTCGATCATTTTACCCTTCGA
*
56352608 GGGGTAATTCGATCATTTTACCCTTCGG
1 -GGGTAATTCGATCATTTTACCCTTCGA
*
56352636 GGGTAATTCGGTCATTTTACCCTTCGA
1 GGGTAATTCGATCATTTTACCCTTCGA
56352663 GGGTAATTCGATCATTT
1 GGGTAATTCGATCATTT
56352680 GCCCATGATT
Statistics
Matches: 133, Mismatches: 13, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
26 2 0.02
27 130 0.98
28 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTAATTCGATCATTTTACCCTTCGA
Found at i:56352626 original size:81 final size:81
Alignment explanation
Indices: 56352500--56352679 Score: 274
Period size: 81 Copynumber: 2.2 Consensus size: 81
56352490 TCACCCCATA
* *
56352500 GGGGTATTTCGATCATTTTATCCTTCGAGGGTAATTCAGTAATTTTACCCTTCGGAGCTAATTCG
1 GGGGTAATTCGATCATTTTACCCTTCGAGGGTAATTCAGTAATTTTACCCTTCGGAGCTAATTCG
56352565 GTCATTTTACCCTTCG
66 GTCATTTTACCCTTCG
* * *
56352581 GGGGTAATTCGATCATTTTACCCTTC-AGGGGTAATTC-GATCATTTTACCCTTCGGGGGTAATT
1 GGGGTAATTCGATCATTTTACCCTTCGA-GGGTAATTCAG-TAATTTTACCCTTCGGAGCTAATT
56352644 CGGTCATTTTACCCTTCG
64 CGGTCATTTTACCCTTCG
*
56352662 AGGGTAATTCGATCATTT
1 GGGGTAATTCGATCATTT
56352680 GCCCATGATT
Statistics
Matches: 91, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
80 2 0.02
81 89 0.98
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (81 bp):
GGGGTAATTCGATCATTTTACCCTTCGAGGGTAATTCAGTAATTTTACCCTTCGGAGCTAATTCG
GTCATTTTACCCTTCG
Found at i:56357169 original size:25 final size:24
Alignment explanation
Indices: 56357149--56357196 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
56357139 ACAAAATATT
*
56357149 AATAATTCAAT-AAATTGAAAACTTA
1 AATAATTAAATAAAATT-AAAA-TTA
56357174 AATAATTAAATAAAATTAAAATT
1 AATAATTAAATAAAATTAAAATT
56357197 TAGGAGAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 2 0.10
25 14 0.67
26 5 0.24
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.33
Consensus pattern (24 bp):
AATAATTAAATAAAATTAAAATTA
Found at i:56374542 original size:17 final size:18
Alignment explanation
Indices: 56374520--56374558 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
56374510 AAACATGATT
*
56374520 CTTAAGT-ATGTCATACA
1 CTTAAGTCATGTCAAACA
56374537 CTTAAGTCCATGTCAAACA
1 CTTAAGT-CATGTCAAACA
56374556 CTT
1 CTT
56374559 CATTGGAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 7 0.37
19 12 0.63
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.33
Consensus pattern (18 bp):
CTTAAGTCATGTCAAACA
Done.