Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 19 of 240
Found at i:6978392 original size:24 final size:25
Alignment explanation
Indices: 6978346--6978393 Score: 71
Period size: 24 Copynumber: 1.9 Consensus size: 25
6978336 ATTATTTTTA
6978346 ATTGTTCAATTTTTTAAAATTGAAAT
1 ATTGTTCAA-TTTTTAAAATTGAAAT
*
6978372 ATTGTTCAA-TTTTAAATTTGAA
1 ATTGTTCAATTTTTAAAATTGAA
6978394 TTATGATGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 12 0.57
26 9 0.43
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50
Consensus pattern (25 bp):
ATTGTTCAATTTTTAAAATTGAAAT
Found at i:6978506 original size:27 final size:28
Alignment explanation
Indices: 6978447--6978510 Score: 76
Period size: 33 Copynumber: 2.1 Consensus size: 28
6978437 TTTTGGTATC
6978447 TTAAAATTTAAATAATTCTATTATTCTGCAAAT
1 TTAAAATTTAAATAATTCTATTA---T--AAAT
6978480 TTAAAATTTAAATAATTCTATTA-AAAT
1 TTAAAATTTAAATAATTCTATTATAAAT
6978507 TTAA
1 TTAA
6978511 TACTTAAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
27 8 0.26
33 23 0.74
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (28 bp):
TTAAAATTTAAATAATTCTATTATAAAT
Found at i:6978667 original size:7 final size:7
Alignment explanation
Indices: 6978657--6978690 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
6978647 TCATAAAATT
*
6978657 CTAAAAC
1 CTAAACC
6978664 CTAAACC
1 CTAAACC
6978671 CTAAACC
1 CTAAACC
*
6978678 CTAAGCC
1 CTAAACC
6978685 CTAAAC
1 CTAAAC
6978691 TACGAGGCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.44, C:0.38, G:0.03, T:0.15
Consensus pattern (7 bp):
CTAAACC
Found at i:6978900 original size:7 final size:7
Alignment explanation
Indices: 6978885--6978944 Score: 65
Period size: 7 Copynumber: 9.0 Consensus size: 7
6978875 AACTATAAAC
*
6978885 CCCTAAA
1 CCCTTAA
6978892 CCCTTAA
1 CCCTTAA
6978899 CCCTTAA
1 CCCTTAA
*
6978906 CCC-CAA
1 CCCTTAA
6978912 CCCTTAA
1 CCCTTAA
6978919 CCCTTAA
1 CCCTTAA
6978926 ---TTAAA
1 CCCTT-AA
6978931 CCCTTAA
1 CCCTTAA
6978938 CCCTTAA
1 CCCTTAA
6978945 ACACCAACCT
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
4 2 0.04
5 2 0.04
6 5 0.11
7 34 0.76
8 2 0.04
ACGTcount: A:0.33, C:0.42, G:0.00, T:0.25
Consensus pattern (7 bp):
CCCTTAA
Found at i:6978915 original size:13 final size:13
Alignment explanation
Indices: 6978897--6978921 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6978887 CTAAACCCTT
6978897 AACCCTTAACCCC
1 AACCCTTAACCCC
6978910 AACCCTTAACCC
1 AACCCTTAACCC
6978922 TTAATTAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.52, G:0.00, T:0.16
Consensus pattern (13 bp):
AACCCTTAACCCC
Found at i:6978915 original size:20 final size:20
Alignment explanation
Indices: 6978890--6978958 Score: 79
Period size: 20 Copynumber: 3.5 Consensus size: 20
6978880 TAAACCCCTA
*
6978890 AACCCTTAACCCTTAACCCC
1 AACCCTTAACCCTTAACACC
*
6978910 AACCCTTAACCCTTAATTA--
1 AACCCTTAACCCTTAA-CACC
6978929 AACCCTTAACCCTTAAACACC
1 AACCCTTAACCCTT-AACACC
*
6978950 AACCTTTAA
1 AACCCTTAA
6978959 ACCATAATAC
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
19 15 0.37
20 18 0.44
21 8 0.20
ACGTcount: A:0.36, C:0.39, G:0.00, T:0.25
Consensus pattern (20 bp):
AACCCTTAACCCTTAACACC
Found at i:6979058 original size:15 final size:15
Alignment explanation
Indices: 6978992--6979059 Score: 50
Period size: 15 Copynumber: 4.4 Consensus size: 15
6978982 CTATATCCCT
6978992 TAAACCT-TAAATCA
1 TAAACCTATAAATCA
* *
6979006 TAGAACATATAAAAATTA
1 TA-AACCTAT--AAATCA
**
6979024 TAAACCCCTAAATCCA
1 TAAACCTATAAAT-CA
6979040 -AAACCTATAAATCA
1 TAAACCTATAAATCA
6979054 TAAACC
1 TAAACC
6979060 CTTAACTCGT
Statistics
Matches: 40, Mismatches: 8, Indels: 11
0.68 0.14 0.19
Matches are distributed among these distances:
14 4 0.10
15 23 0.57
16 2 0.05
17 4 0.10
18 7 0.17
ACGTcount: A:0.53, C:0.22, G:0.01, T:0.24
Consensus pattern (15 bp):
TAAACCTATAAATCA
Found at i:6979245 original size:39 final size:39
Alignment explanation
Indices: 6979190--6979265 Score: 109
Period size: 39 Copynumber: 1.9 Consensus size: 39
6979180 CCCATATCCC
6979190 TTAAACCCTAAATCATAGA-ACATATATAAACTATAAATT
1 TTAAACCCTAAATCATA-ACACATATATAAACTATAAATT
* * *
6979229 TTAAACCCTGATTCATAACATATATATAAACTATAAA
1 TTAAACCCTAAATCATAACACATATATAAACTATAAA
6979266 GTGTAAGCCC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 1 0.03
39 32 0.97
ACGTcount: A:0.50, C:0.16, G:0.03, T:0.32
Consensus pattern (39 bp):
TTAAACCCTAAATCATAACACATATATAAACTATAAATT
Found at i:6980103 original size:114 final size:114
Alignment explanation
Indices: 6979829--6980182 Score: 290
Period size: 114 Copynumber: 3.1 Consensus size: 114
6979819 TTCCTCTATT
* * ** * *
6979829 TTGCGGCG-TTTCTAAGAAAGCGCCACTAAAGTCTCTAAAACCTAAATAAAAAAC-GACTACGTT
1 TTGCGGCGTTTTC-CAGTAAGCGCCACTAACTTTTCTAAAACCTAAACAAAAAACGGA-TACGTT
* * * * *
6979892 TTCTTAACAGTTTTACGGCGCTT-TG-TCAAAAGCGCCTCCAAATCTTGGCTA
64 TTCTTAACAGTTTTGCGGCGCTTATGAT--AAAGCGCCGCTAATTCTTGACTA
* * * * * * ** * *
6979943 TTGCGGCATTTTTC-GATAATCGCCACTATCGTCTT-GAAAAGATAAACGAAAAACGGAAACGTT
1 TTGCGGCGTTTTCCAG-TAAGCGCCACTAAC-TTTTCTAAAACCTAAACAAAAAACGGATACGTT
*
6980006 TTCTTAACAGTTTTGCGGCGCTTATGATAAAGCGCCGCTAATTCTTGA-TCG
64 TTCTTAACAGTTTTGCGGCGCTTATGATAAAGCGCCGCTAATTCTTGACT-A
** * *
6980057 TTGCGGCGTTTTCCAGTAAGCGCCACTAACTTTTCTAAAACCTAAACTTAAAACGGCTACATTTT
1 TTGCGGCGTTTTCCAGTAAGCGCCACTAACTTTTCTAAAACCTAAACAAAAAACGGATACGTTTT
* * * ** * *
6980122 CTTAGCAGTTTTTGTGGCGTTTATGATAAAATGCTGGTAATTCTTGACTA
66 CTTAACAG-TTTTGCGGCGCTTATGATAAAGCGCCGCTAATTCTTGACTA
6980172 TTGCGGCGTTT
1 TTGCGGCGTTT
6980183 CTAAAGAAAG
Statistics
Matches: 186, Mismatches: 43, Indels: 21
0.74 0.17 0.08
Matches are distributed among these distances:
113 5 0.03
114 127 0.68
115 52 0.28
116 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (114 bp):
TTGCGGCGTTTTCCAGTAAGCGCCACTAACTTTTCTAAAACCTAAACAAAAAACGGATACGTTTT
CTTAACAGTTTTGCGGCGCTTATGATAAAGCGCCGCTAATTCTTGACTA
Found at i:6983103 original size:3 final size:3
Alignment explanation
Indices: 6983095--6983122 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
6983085 ATTTTGACAG
6983095 GAA GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA G
6983123 GTCTAAGTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:6985732 original size:10 final size:10
Alignment explanation
Indices: 6985717--6985746 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
6985707 ACCAACCAAT
6985717 CAAATTTCAA
1 CAAATTTCAA
6985727 CAAATTTCAA
1 CAAATTTCAA
*
6985737 CAAGTTTCAA
1 CAAATTTCAA
6985747 TCCTTAGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.47, C:0.20, G:0.03, T:0.30
Consensus pattern (10 bp):
CAAATTTCAA
Found at i:7006837 original size:20 final size:20
Alignment explanation
Indices: 7006786--7006843 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
7006776 AAGTAAGCTA
*
7006786 AATATGTTTTTTGAAGATTAG
1 AATAT-TTTTTTCAAGATTAG
* *
7006807 AATATATTTTTCAATATTAG
1 AATATTTTTTTCAAGATTAG
*
7006827 AATATTTTTTTTAAGAT
1 AATATTTTTTTCAAGAT
7006844 GCTATACAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
20 26 0.84
21 5 0.16
ACGTcount: A:0.36, C:0.02, G:0.10, T:0.52
Consensus pattern (20 bp):
AATATTTTTTTCAAGATTAG
Found at i:7008418 original size:6 final size:6
Alignment explanation
Indices: 7008409--7008435 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
7008399 TCTTCCATTT
7008409 CCCTTC CCCTTC CCCTTC CCCTTC CCC
1 CCCTTC CCCTTC CCCTTC CCCTTC CCC
7008436 CATCCTTGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.70, G:0.00, T:0.30
Consensus pattern (6 bp):
CCCTTC
Found at i:7022243 original size:3 final size:3
Alignment explanation
Indices: 7022230--7022318 Score: 66
Period size: 3 Copynumber: 30.3 Consensus size: 3
7022220 GAGGGCATAT
7022230 ATA AT- ATA ATA ATA AT- ATA A-A A-A ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA -AT-A -ATA ATA
* *
7022274 ATA ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
7022318 A
1 A
7022319 AACAAAGCTC
Statistics
Matches: 71, Mismatches: 6, Indels: 18
0.75 0.06 0.19
Matches are distributed among these distances:
2 13 0.18
3 49 0.69
4 7 0.10
5 2 0.03
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:7022260 original size:30 final size:30
Alignment explanation
Indices: 7022226--7022318 Score: 100
Period size: 30 Copynumber: 3.0 Consensus size: 30
7022216 TGGAGAGGGC
*
7022226 ATATATAATA-TAATAATAATATAAAAAATA
1 ATATATAATAGTAATAATAATA-AAATAATA
*
7022256 ATATATACATGAGAAATAATAATAATAATAAT-
1 ATATATA-AT-AGTAATAATAATAA-AATAATA
* *
7022288 ATAAATAATAGTAAAAATAATAAAATAATA
1 ATATATAATAGTAATAATAATAAAATAATA
7022318 A
1 A
7022319 AACAAAGCTC
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
29 6 0.11
30 20 0.38
31 4 0.08
32 8 0.15
33 15 0.28
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (30 bp):
ATATATAATAGTAATAATAATAAAATAATA
Found at i:7022939 original size:37 final size:38
Alignment explanation
Indices: 7022889--7022963 Score: 100
Period size: 37 Copynumber: 2.0 Consensus size: 38
7022879 TTATTTATTT
* *
7022889 TTTGTGTTTGGGTTGGGATTAGGTTGGGCC-AAATTGGG
1 TTTGTGTTAGGGTT-GGATTAAGTTGGGCCAAAATTGGG
*
7022927 TTTG-GTTAGGGTTGGTTTAAGTTGGGCCAAAATTGGG
1 TTTGTGTTAGGGTTGGATTAAGTTGGGCCAAAATTGGG
7022964 CCTTTACAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 13 0.39
37 16 0.48
38 4 0.12
ACGTcount: A:0.16, C:0.05, G:0.40, T:0.39
Consensus pattern (38 bp):
TTTGTGTTAGGGTTGGATTAAGTTGGGCCAAAATTGGG
Found at i:7023852 original size:80 final size:80
Alignment explanation
Indices: 7023748--7023910 Score: 317
Period size: 80 Copynumber: 2.0 Consensus size: 80
7023738 GTTGAAGTTT
7023748 CAAGACGATGAATTATAGAGTAATGATGAATTAGAAGAGACTAATTATATTCGTGGGCCTAAACT
1 CAAGACGATGAATTATAGAGTAATGATGAATTAGAAGAGACTAATTATATTCGTGGGCCTAAACT
7023813 CTCAATCTATGATGA
66 CTCAATCTATGATGA
*
7023828 CAAGACGATGAATTATGGAGTAATGATGAATTAGAAGAGACTAATTATATTCGTGGGCCTAAACT
1 CAAGACGATGAATTATAGAGTAATGATGAATTAGAAGAGACTAATTATATTCGTGGGCCTAAACT
7023893 CTCAATCTATGATGA
66 CTCAATCTATGATGA
7023908 CAA
1 CAA
7023911 ACCTATGTGG
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 82 1.00
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (80 bp):
CAAGACGATGAATTATAGAGTAATGATGAATTAGAAGAGACTAATTATATTCGTGGGCCTAAACT
CTCAATCTATGATGA
Found at i:7029717 original size:18 final size:18
Alignment explanation
Indices: 7029672--7029717 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
7029662 CTTCCTTAAT
7029672 TTTTGATTTA-TTATTTTA
1 TTTT-ATTTATTTATTTTA
*
7029690 TTTTAGTTATTTATTTTAA
1 TTTTATTTATTTATTTT-A
7029709 TTTT-TTTAT
1 TTTTATTTAT
7029718 CTAACTTGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 4 0.17
18 15 0.62
19 5 0.21
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.74
Consensus pattern (18 bp):
TTTTATTTATTTATTTTA
Found at i:7031006 original size:24 final size:26
Alignment explanation
Indices: 7030941--7031007 Score: 84
Period size: 24 Copynumber: 2.6 Consensus size: 26
7030931 AAAAATAAAA
7030941 ATTTATCAAAATATTATAATTTTTTTT
1 ATTTATCAAAATA-TATAATTTTTTTT
* *
7030968 ATTTATTAAAGTATAT-A-TTTTTTT
1 ATTTATCAAAATATATAATTTTTTTT
*
7030992 ATTTACCAAAATATAT
1 ATTTATCAAAATATAT
7031008 CAAAAAAAAC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
24 20 0.57
25 1 0.03
26 3 0.09
27 11 0.31
ACGTcount: A:0.39, C:0.04, G:0.01, T:0.55
Consensus pattern (26 bp):
ATTTATCAAAATATATAATTTTTTTT
Found at i:7031110 original size:27 final size:27
Alignment explanation
Indices: 7031080--7031144 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
7031070 CGCCAATGGG
7031080 ATTGGCGGCACCAATGGTGCCAATAAT-
1 ATTGGCGGCACCAATGGTGCCAA-AATA
*
7031107 ATTGGCGGCACCAATGGTGCCAAACTA
1 ATTGGCGGCACCAATGGTGCCAAAATA
7031134 ATTGGCGGCAC
1 ATTGGCGGCAC
7031145 TACTAGTATT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
26 2 0.06
27 34 0.94
ACGTcount: A:0.28, C:0.25, G:0.28, T:0.20
Consensus pattern (27 bp):
ATTGGCGGCACCAATGGTGCCAAAATA
Found at i:7031306 original size:19 final size:21
Alignment explanation
Indices: 7031268--7031306 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
7031258 AATAATTGAT
*
7031268 TATATTGTTGCTATTATTTTG
1 TATATTGTTGCTAATATTTTG
7031289 TATATT-TTG-TAATATTTT
1 TATATTGTTGCTAATATTTT
7031307 TTGTTTTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 3 0.18
21 6 0.35
ACGTcount: A:0.23, C:0.03, G:0.10, T:0.64
Consensus pattern (21 bp):
TATATTGTTGCTAATATTTTG
Found at i:7031377 original size:3 final size:3
Alignment explanation
Indices: 7031366--7031397 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
7031356 ATTATTATTA
*
7031366 TTG TCG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
7031398 AGTATTAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.03, G:0.31, T:0.66
Consensus pattern (3 bp):
TTG
Found at i:7031547 original size:4 final size:4
Alignment explanation
Indices: 7031538--7031563 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
7031528 ATTATTATTA
7031538 TAGT TAGT TAGT TAGT TAGT TAGT TA
1 TAGT TAGT TAGT TAGT TAGT TAGT TA
7031564 TTGTTTTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (4 bp):
TAGT
Found at i:7032193 original size:18 final size:18
Alignment explanation
Indices: 7032170--7032207 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
7032160 GGTTGGTGGT
7032170 GAAGAAGAAGGTGCTGGC
1 GAAGAAGAAGGTGCTGGC
*
7032188 GAAGAAGAAGGTGGTGGC
1 GAAGAAGAAGGTGCTGGC
7032206 GA
1 GA
7032208 TTATTGGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.34, C:0.08, G:0.47, T:0.11
Consensus pattern (18 bp):
GAAGAAGAAGGTGCTGGC
Found at i:7036970 original size:24 final size:24
Alignment explanation
Indices: 7036942--7036990 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
7036932 AGGTTTTTTT
7036942 ATATATATTTTGGTAAATAAAAAA
1 ATATATATTTTGGTAAATAAAAAA
*
7036966 ATATATTTTTTGGTAAATAAAAAA
1 ATATATATTTTGGTAAATAAAAAA
7036990 A
1 A
7036991 ACTTATAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (24 bp):
ATATATATTTTGGTAAATAAAAAA
Found at i:7037711 original size:22 final size:22
Alignment explanation
Indices: 7037681--7037821 Score: 74
Period size: 19 Copynumber: 6.8 Consensus size: 22
7037671 TCTTCTTCTT
*
7037681 TTTTTTTTCATT-TTTCCTTTCC
1 TTTTCTTTCATTCTTT-CTTTCC
*
7037703 TTTTCTTTCCTTCTTTCTTT-C
1 TTTTCTTTCATTCTTTCTTTCC
* *
7037724 -TTT-TTTC-TTC-TCCTTTCA
1 TTTTCTTTCATTCTTTCTTTCC
7037742 TTTTC-TTC-TTCTTTCTTT-C
1 TTTTCTTTCATTCTTTCTTTCC
* *
7037761 TTTTTTTCTCTTCTCTTCTCCTTTCC
1 TTTTCTT-TCAT-TCTT-T-CTTTCC
*
7037787 TTTTCTTTCCTTC-TT-TTT-C
1 TTTTCTTTCATTCTTTCTTTCC
*
7037806 -TTTCTTTCTTTCTTTC
1 TTTTCTTTCATTCTTTC
7037822 CCTCTCCTTC
Statistics
Matches: 95, Mismatches: 10, Indels: 30
0.70 0.07 0.22
Matches are distributed among these distances:
17 5 0.05
18 14 0.15
19 20 0.21
20 12 0.13
21 3 0.03
22 16 0.17
23 8 0.08
24 3 0.03
25 7 0.07
26 7 0.07
ACGTcount: A:0.01, C:0.28, G:0.00, T:0.71
Consensus pattern (22 bp):
TTTTCTTTCATTCTTTCTTTCC
Found at i:7037720 original size:4 final size:4
Alignment explanation
Indices: 7037704--7037821 Score: 86
Period size: 4 Copynumber: 29.0 Consensus size: 4
7037694 TTCCTTTCCT
*
7037704 TTTC TTTC CTTC TTTC TTTC TTT- TTTC TTCTCC TTTC ATTT- TCTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT-T-C TTTC -TTTC T-TTC
* *
7037750 -TTC TTTC TTTC TTTT TTTC TCTTC TCTTC -TCC TTTCC TTTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC T-TTC T-TTC TTTC TTT-C -TTTC TTTC
*
7037796 CTTC -TT- TTTC TTTC TTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC
7037822 CCTCTCCTTC
Statistics
Matches: 94, Mismatches: 7, Indels: 26
0.74 0.06 0.20
Matches are distributed among these distances:
3 13 0.14
4 60 0.64
5 15 0.16
6 6 0.06
ACGTcount: A:0.01, C:0.29, G:0.00, T:0.70
Consensus pattern (4 bp):
TTTC
Found at i:7037725 original size:45 final size:44
Alignment explanation
Indices: 7037669--7037830 Score: 159
Period size: 45 Copynumber: 3.8 Consensus size: 44
7037659 TTCCTTCCCT
*
7037669 CTTC-TTC-TTCTTTTTTTTTTCATTTTTCCTTTCCTTTTCTTTC
1 CTTCTTTCTTTCTTTTTTTTTTC-TTTCTCCTTTCCTTTTCTTTC
*
7037712 CTTCTTTCTTTC----TTTTTTC-TTCTCCTTTCATTTTC-TT-
1 CTTCTTTCTTTCTTTTTTTTTTCTTTCTCCTTTCCTTTTCTTTC
7037749 CTTCTTTCTTTCTTTTTTTCTCTTCTCTTCTCCTTTCCTTTTCTTTC
1 CTTCTTTCTTTCTTTTTTT-T-TTCT-TTCTCCTTTCCTTTTCTTTC
* *
7037796 CTTC-TT-TTTCTTTCTTTCTTTCTTTC-CCTCTCCTT
1 CTTCTTTCTTTCTTT-TTTTTTTCTTTCTCCTTTCCTT
7037831 CTGGTCCCCC
Statistics
Matches: 101, Mismatches: 5, Indels: 27
0.76 0.04 0.20
Matches are distributed among these distances:
37 12 0.12
38 2 0.02
39 14 0.14
41 10 0.10
42 9 0.09
43 10 0.10
44 7 0.07
45 26 0.26
46 7 0.07
47 4 0.04
ACGTcount: A:0.01, C:0.30, G:0.00, T:0.69
Consensus pattern (44 bp):
CTTCTTTCTTTCTTTTTTTTTTCTTTCTCCTTTCCTTTTCTTTC
Found at i:7037738 original size:34 final size:34
Alignment explanation
Indices: 7037677--7037818 Score: 105
Period size: 37 Copynumber: 4.0 Consensus size: 34
7037667 CTCTTCTTCT
* * *
7037677 TCTTTTTTTTTTCATTTTTCCTTTCCTTTTC-TTTC
1 TCTTCTTTCTTTC-TTTTTTCTTTCC-TTTCATTTC
7037712 -CTTCTTTCTTTCTTTTTTCTTCTCCTTTCATTTTC
1 TCTTCTTTCTTTCTTTTTTCTT-TCCTTTCA-TTTC
*
7037747 TTCTTCTTTCTTTCTTTTTTTCTCTTCTCTTCTCCTTTCC
1 -TCTTCTTTCTTTC-TTTTTTCT-TTC-CTT-TCATTT-C
* *
7037787 TTTTCTTTCCTTC-TTTTTCTTT-CTTTC-TTTC
1 TCTTCTTTCTTTCTTTTTTCTTTCCTTTCATTTC
7037818 T
1 T
7037819 TTCCCTCTCC
Statistics
Matches: 91, Mismatches: 6, Indels: 24
0.75 0.05 0.20
Matches are distributed among these distances:
31 2 0.02
32 3 0.03
33 14 0.15
34 16 0.18
35 4 0.04
36 2 0.02
37 19 0.21
38 10 0.11
39 18 0.20
40 3 0.03
ACGTcount: A:0.01, C:0.27, G:0.00, T:0.71
Consensus pattern (34 bp):
TCTTCTTTCTTTCTTTTTTCTTTCCTTTCATTTC
Found at i:7037753 original size:37 final size:38
Alignment explanation
Indices: 7037668--7037766 Score: 130
Period size: 37 Copynumber: 2.6 Consensus size: 38
7037658 CTTCCTTCCC
* * *
7037668 TCTTCTTC-TTCTTTTTTTTTTCATTTTTCCTTTCCTTT
1 TCTTCTTCTTTCTTTCTTTTTTCA-TTCTCCTTTCATTT
7037706 TCTTTCCTTCTTTCTTTCTTTTTTC-TTCTCCTTTCATTT
1 TC-TT-CTTCTTTCTTTCTTTTTTCATTCTCCTTTCATTT
7037745 TCTTCTTCTTTCTTTCTTTTTT
1 TCTTCTTCTTTCTTTCTTTTTT
7037767 TCTCTTCTCT
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
37 18 0.33
38 4 0.07
39 16 0.29
40 4 0.07
41 13 0.24
ACGTcount: A:0.02, C:0.25, G:0.00, T:0.73
Consensus pattern (38 bp):
TCTTCTTCTTTCTTTCTTTTTTCATTCTCCTTTCATTT
Found at i:7037754 original size:33 final size:33
Alignment explanation
Indices: 7037699--7037821 Score: 78
Period size: 34 Copynumber: 3.8 Consensus size: 33
7037689 CATTTTTCCT
*
7037699 TTCCTTTTCTTTCCTTCTTTCTTTCTTTTTTCT
1 TTCCTTTTCTTTCCTTCTTTCTTTCTTTTTCCT
* **
7037732 TCTCC-TTTCATTTTCTTC-TTCTTTCTTTCTTTTT
1 T-TCCTTTTC-TTTCCTTCTTTCTTTCTTT-TTCCT
* * *
7037766 TTCTCTTCTCTTCTCC-T-TTCCTTT-TCTTTCC-
1 TTC-CTTTTCTT-TCCTTCTTTCTTTCTTTTTCCT
* *
7037797 TTCTTTTTCTTTCTTTCTTTCTTTC
1 TTCCTTTTCTTTCCTTCTTTCTTTC
7037822 CCTCTCCTTC
Statistics
Matches: 68, Mismatches: 12, Indels: 21
0.67 0.12 0.21
Matches are distributed among these distances:
29 2 0.03
30 7 0.10
31 9 0.13
32 2 0.03
33 19 0.28
34 24 0.35
35 5 0.07
ACGTcount: A:0.01, C:0.29, G:0.00, T:0.70
Consensus pattern (33 bp):
TTCCTTTTCTTTCCTTCTTTCTTTCTTTTTCCT
Found at i:7037941 original size:27 final size:27
Alignment explanation
Indices: 7037866--7037932 Score: 116
Period size: 27 Copynumber: 2.5 Consensus size: 27
7037856 TAATATACAC
7037866 TGGTGCCGCCAATGGTATTGGCACCAT
1 TGGTGCCGCCAATGGTATTGGCACCAT
* *
7037893 TGGTGCCGCCAATGGTTTTGGCACCTT
1 TGGTGCCGCCAATGGTATTGGCACCAT
7037920 TGGTGCCGCCAAT
1 TGGTGCCGCCAAT
7037933 CCCATTGGCG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.15, C:0.27, G:0.30, T:0.28
Consensus pattern (27 bp):
TGGTGCCGCCAATGGTATTGGCACCAT
Found at i:7038000 original size:12 final size:13
Alignment explanation
Indices: 7037972--7038003 Score: 50
Period size: 11 Copynumber: 2.6 Consensus size: 13
7037962 TCGATCTGAA
7037972 TTTTTTTTACAGG
1 TTTTTTTTACAGG
7037985 TTTTTTTTA-A-G
1 TTTTTTTTACAGG
7037996 TTTTTTTT
1 TTTTTTTT
7038004 GATATATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 9 0.47
12 1 0.05
13 9 0.47
ACGTcount: A:0.12, C:0.03, G:0.09, T:0.75
Consensus pattern (13 bp):
TTTTTTTTACAGG
Found at i:7038033 original size:25 final size:25
Alignment explanation
Indices: 7038005--7038072 Score: 102
Period size: 25 Copynumber: 2.6 Consensus size: 25
7037995 GTTTTTTTTG
7038005 ATATATTTTGGTAAATAAAAAATA-T
1 ATATATTTTGGTAAATAAAAAA-AGT
7038030 ATATATTTTGGTAAATAAAAAAAGTT
1 ATATATTTTGGTAAATAAAAAAAG-T
7038056 ATAATATTTTGGTAAAT
1 AT-ATATTTTGGTAAAT
7038073 TTTTATTTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
24 1 0.03
25 22 0.55
26 3 0.08
27 14 0.35
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (25 bp):
ATATATTTTGGTAAATAAAAAAAGT
Found at i:7038232 original size:26 final size:26
Alignment explanation
Indices: 7038181--7038232 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
7038171 TAATTTCTTA
**
7038181 TAAAATTAATATATTTAACTTTAATT
1 TAAAATTAATATATTTAACTACAATT
7038207 TAAAATTAAATATATTTAA-TACAATT
1 TAAAATT-AATATATTTAACTACAATT
7038233 ATATATTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 12 0.52
27 11 0.48
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (26 bp):
TAAAATTAATATATTTAACTACAATT
Found at i:7048561 original size:19 final size:19
Alignment explanation
Indices: 7048533--7048571 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
7048523 GGTTTAACTT
* *
7048533 AAGTTTTATTTAATTGTTA
1 AAGTTATATTAAATTGTTA
*
7048552 AAGTTATATTAAATTTTTA
1 AAGTTATATTAAATTGTTA
7048571 A
1 A
7048572 CTAATATGAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (19 bp):
AAGTTATATTAAATTGTTA
Found at i:7049664 original size:9 final size:9
Alignment explanation
Indices: 7049652--7049692 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
7049642 TCAATTTGGT
7049652 TAATTCGGG
1 TAATTCGGG
*
7049661 TAATTCGGT
1 TAATTCGGG
7049670 TAATTCGGG
1 TAATTCGGG
*
7049679 TAATTCGGT
1 TAATTCGGG
7049688 TAATT
1 TAATT
7049693 TTTAACCAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.24, C:0.10, G:0.24, T:0.41
Consensus pattern (9 bp):
TAATTCGGG
Found at i:7049670 original size:18 final size:18
Alignment explanation
Indices: 7049644--7049692 Score: 89
Period size: 18 Copynumber: 2.7 Consensus size: 18
7049634 GTAGTGATTC
*
7049644 AATTTGGTTAATTCGGGT
1 AATTCGGTTAATTCGGGT
7049662 AATTCGGTTAATTCGGGT
1 AATTCGGTTAATTCGGGT
7049680 AATTCGGTTAATT
1 AATTCGGTTAATT
7049693 TTTAACCAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.24, C:0.08, G:0.24, T:0.43
Consensus pattern (18 bp):
AATTCGGTTAATTCGGGT
Found at i:7049955 original size:8 final size:7
Alignment explanation
Indices: 7049939--7049989 Score: 68
Period size: 7 Copynumber: 7.3 Consensus size: 7
7049929 TAAATATATA
7049939 TTTT-TT
1 TTTTATT
7049945 TTTTATT
1 TTTTATT
7049952 TTTTATT
1 TTTTATT
*
7049959 TTTTAAT
1 TTTTATT
7049966 TTTTATT
1 TTTTATT
7049973 TTTTAATT
1 TTTT-ATT
*
7049981 TTTAATT
1 TTTTATT
7049988 TT
1 TT
7049990 AAAATACTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
6 4 0.10
7 30 0.75
8 6 0.15
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTATT
Found at i:7049970 original size:21 final size:21
Alignment explanation
Indices: 7049944--7049989 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
7049934 ATATATTTTT
*
7049944 TTTTTATTTTTTATTTTTTAA
1 TTTTTATTTTTTAATTTTTAA
7049965 TTTTTATTTTTTAATTTTTAA
1 TTTTTATTTTTTAATTTTTAA
7049986 TTTT
1 TTTT
7049990 AAAATACTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTTTATTTTTTAATTTTTAA
Found at i:7052644 original size:12 final size:12
Alignment explanation
Indices: 7052627--7052686 Score: 56
Period size: 12 Copynumber: 5.3 Consensus size: 12
7052617 ATAAATACCA
7052627 AAAAATTATTTT
1 AAAAATTATTTT
**
7052639 AAAAATTAAATT
1 AAAAATTATTTT
*
7052651 AAAAATTA---A
1 AAAAATTATTTT
*
7052660 AAAAAGTATTTT
1 AAAAATTATTTT
7052672 AAAAA-TATTTT
1 AAAAATTATTTT
7052683 AAAA
1 AAAA
7052687 TTAAAAAAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
9 7 0.17
11 10 0.25
12 23 0.57
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (12 bp):
AAAAATTATTTT
Found at i:7052688 original size:38 final size:38
Alignment explanation
Indices: 7052646--7052759 Score: 108
Period size: 38 Copynumber: 3.3 Consensus size: 38
7052636 TTTAAAAATT
7052646 AAATTAAAAATTAAAAAAAGTATTTTAAAAATATTTTA
1 AAATTAAAAATTAAAAAAAGTATTTTAAAAATATTTTA
*
7052684 AAATTAAAAAAATTTAAAAAA--ATTTT--AAA-A--TT-
1 AAATT--AAAAATTAAAAAAAGTATTTTAAAAATATTTTA
*
7052716 --A--AAAAATTAAAAAAAGTATTTTAAAAGTATTTTA
1 AAATTAAAAATTAAAAAAAGTATTTTAAAAATATTTTA
7052750 AAATTAAAAA
1 AAATTAAAAA
7052760 AATAATAAAT
Statistics
Matches: 59, Mismatches: 3, Indels: 28
0.66 0.03 0.31
Matches are distributed among these distances:
26 13 0.22
28 5 0.08
30 3 0.05
31 1 0.02
33 4 0.07
35 1 0.02
36 4 0.07
38 15 0.25
40 13 0.22
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (38 bp):
AAATTAAAAATTAAAAAAAGTATTTTAAAAATATTTTA
Found at i:7052703 original size:17 final size:17
Alignment explanation
Indices: 7052670--7052730 Score: 52
Period size: 17 Copynumber: 3.5 Consensus size: 17
7052660 AAAAAGTATT
* *
7052670 TTAAAAATATTTTAAAA
1 TTAAAAAAATTTAAAAA
7052687 TTAAAAAAATTTAAAAAAA
1 TTAAAAAAATTT--AAAAA
** *
7052706 TT-TTAAAATTAAAAAA
1 TTAAAAAAATTTAAAAA
7052722 TTAAAAAAA
1 TTAAAAAAA
7052731 GTATTTTAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
16 7 0.21
17 15 0.44
18 6 0.18
19 6 0.18
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
TTAAAAAAATTTAAAAA
Found at i:7052708 original size:27 final size:26
Alignment explanation
Indices: 7052669--7052741 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 26
7052659 AAAAAAGTAT
*
7052669 TTTAAAAATATTTTAAAATTAAAAAAA
1 TTTAAAAAAATTTTAAAATT-AAAAAA
7052696 TTTAAAAAAATTTTAAAATTAAAAAA
1 TTTAAAAAAATTTTAAAATTAAAAAA
*
7052722 TTAAAAAAAGTATTTTAAAA
1 TTTAAAAAA--ATTTTAAAA
7052742 GTATTTTAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
26 14 0.33
27 19 0.45
28 9 0.21
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (26 bp):
TTTAAAAAAATTTTAAAATTAAAAAA
Found at i:7052741 original size:11 final size:11
Alignment explanation
Indices: 7052727--7052752 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7052717 AAAAATTAAA
7052727 AAAAGTATTTT
1 AAAAGTATTTT
7052738 AAAAGTATTTT
1 AAAAGTATTTT
7052749 AAAA
1 AAAA
7052753 TTAAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:7054046 original size:19 final size:19
Alignment explanation
Indices: 7054011--7054059 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
7054001 TATGATTATA
7054011 ATTTAATTAAT--TATTTT
1 ATTTAATTAATCATATTTT
7054028 -TCTTAATTAATCATATTTT
1 AT-TTAATTAATCATATTTT
7054047 ATTTAATTAATCA
1 ATTTAATTAATCA
7054060 AAATATAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
16 1 0.04
17 9 0.32
19 17 0.61
20 1 0.04
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTTAATTAATCATATTTT
Found at i:7055766 original size:27 final size:27
Alignment explanation
Indices: 7055732--7055795 Score: 119
Period size: 27 Copynumber: 2.4 Consensus size: 27
7055722 ATAAAAAATA
*
7055732 ACCAAAATATTATAACTTTTTTTATTT
1 ACCAAAATATTATAAATTTTTTTATTT
7055759 ACCAAAATATTATAAATTTTTTTATTT
1 ACCAAAATATTATAAATTTTTTTATTT
7055786 ACCAAAATAT
1 ACCAAAATAT
7055796 AAAAAAACAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (27 bp):
ACCAAAATATTATAAATTTTTTTATTT
Found at i:7055871 original size:27 final size:27
Alignment explanation
Indices: 7055833--7055909 Score: 109
Period size: 27 Copynumber: 2.9 Consensus size: 27
7055823 AAAAAACCTG
* *
7055833 TGGCGGCACCAAAGATGCCAAAGAGAT
1 TGGCGGCACCAATGGTGCCAAAGAGAT
* *
7055860 TGGCGGAACCAATGGCGCCAAAGAGAT
1 TGGCGGCACCAATGGTGCCAAAGAGAT
*
7055887 TGGGGGCACCAATGGTGCCAAAG
1 TGGCGGCACCAATGGTGCCAAAG
7055910 GACTAAAATG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.32, C:0.22, G:0.34, T:0.12
Consensus pattern (27 bp):
TGGCGGCACCAATGGTGCCAAAGAGAT
Found at i:7056204 original size:20 final size:20
Alignment explanation
Indices: 7056179--7056216 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7056169 ATTTTATTAT
7056179 TAAAGTAAATA-TATTTTACC
1 TAAAGTAAA-ACTATTTTACC
7056199 TAAAGTAAAACTATTTTA
1 TAAAGTAAAACTATTTTA
7056217 AAAAGTATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.39
Consensus pattern (20 bp):
TAAAGTAAAACTATTTTACC
Found at i:7056566 original size:45 final size:45
Alignment explanation
Indices: 7056513--7056686 Score: 295
Period size: 45 Copynumber: 4.0 Consensus size: 45
7056503 ATTCAAGAAG
*
7056513 TAATAACTCTATTTTAATTTAATAAATTATTCTCATCAAATTACT
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATCAAATTACT
*
7056558 TAGTAACTCTATTTTAATTTAATAAACTATTCTCATC--A-T--T
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATCAAATTACT
7056598 TAATAACTCTATTTTAATTTAATAAACTATTCTCATCAAATTACT
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATCAAATTACT
7056643 TAATAACTCTATTTTAATTTAATAAACTATTCTCATCAAATTAC
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATCAAATTAC
7056687 CAAAATAGAG
Statistics
Matches: 121, Mismatches: 3, Indels: 10
0.90 0.02 0.07
Matches are distributed among these distances:
40 37 0.31
42 2 0.02
43 2 0.02
45 80 0.66
ACGTcount: A:0.39, C:0.15, G:0.01, T:0.45
Consensus pattern (45 bp):
TAATAACTCTATTTTAATTTAATAAACTATTCTCATCAAATTACT
Found at i:7056605 original size:40 final size:42
Alignment explanation
Indices: 7056475--7056680 Score: 262
Period size: 45 Copynumber: 4.9 Consensus size: 42
7056465 TCTAATTAAG
* ** *
7056475 TAATAACTTTATTTTAATTTAATAAACTA-T-TCA--AGAAG
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATCATTAT
*
7056513 TAATAACTCTATTTTAATTTAATAAATTATTCTCATCAAATTACT
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATC--ATTA-T
*
7056558 TAGTAACTCTATTTTAATTTAATAAACTATTCTCATCA-T-T
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATCATTAT
7056598 TAATAACTCTATTTTAATTTAATAAACTATTCTCATCAAATTACT
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATC--ATTA-T
7056643 TAATAACTCTATTTTAATTTAATAAACTATTCTCATCA
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATCA
7056681 AATTACCAAA
Statistics
Matches: 148, Mismatches: 8, Indels: 19
0.85 0.05 0.11
Matches are distributed among these distances:
38 27 0.18
39 1 0.01
40 40 0.27
42 2 0.01
43 3 0.02
44 2 0.01
45 73 0.49
ACGTcount: A:0.40, C:0.14, G:0.01, T:0.45
Consensus pattern (42 bp):
TAATAACTCTATTTTAATTTAATAAACTATTCTCATCATTAT
Found at i:7056631 original size:85 final size:85
Alignment explanation
Indices: 7056475--7056681 Score: 337
Period size: 85 Copynumber: 2.5 Consensus size: 85
7056465 TCTAATTAAG
* **
7056475 TAATAACTTTATTTTAATTTAATAAACTA-T-TCAAGAAGTAATAACTCTATTTTAATTTAATAA
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATCAAGTAATAACTCTATTTTAATTTAATAA
*
7056538 ATTATTCTCATCAAATTACT
66 ACTATTCTCATCAAATTACT
* **
7056558 TAGTAACTCTATTTTAATTTAATAAACTATTCTCATCATTTAATAACTCTATTTTAATTTAATAA
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATCAAGTAATAACTCTATTTTAATTTAATAA
7056623 ACTATTCTCATCAAATTACT
66 ACTATTCTCATCAAATTACT
7056643 TAATAACTCTATTTTAATTTAATAAACTATTCTCATCAA
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATCAA
7056682 ATTACCAAAA
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
83 27 0.24
84 1 0.01
85 85 0.75
ACGTcount: A:0.40, C:0.14, G:0.01, T:0.45
Consensus pattern (85 bp):
TAATAACTCTATTTTAATTTAATAAACTATTCTCATCAAGTAATAACTCTATTTTAATTTAATAA
ACTATTCTCATCAAATTACT
Found at i:7056712 original size:15 final size:15
Alignment explanation
Indices: 7056692--7056721 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7056682 ATTACCAAAA
7056692 TAGAGTTTATTAAAT
1 TAGAGTTTATTAAAT
7056707 TAGAGTTTATTAAAT
1 TAGAGTTTATTAAAT
7056722 GATAATAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (15 bp):
TAGAGTTTATTAAAT
Found at i:7057292 original size:27 final size:27
Alignment explanation
Indices: 7057231--7057294 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
7057221 TGTTTTTGAT
* *
7057231 ATATTTTAGTAAATAAAAAAATTTATA
1 ATATTTTGGTAAATAAAAAAAGTTATA
7057258 ATATTTTGGTAAATAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAGTTATA
7057285 ATATTTTGGT
1 ATATTTTGGT
7057295 TATTTTTTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAAAAAGTTATA
Found at i:7063102 original size:9 final size:9
Alignment explanation
Indices: 7063088--7063115 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
7063078 TGAGTTTTCG
7063088 AATTCGAAT
1 AATTCGAAT
7063097 AATTCGAAT
1 AATTCGAAT
7063106 AATTCGAAT
1 AATTCGAAT
7063115 A
1 A
7063116 TCAAACTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:7083964 original size:51 final size:50
Alignment explanation
Indices: 7083893--7084087 Score: 196
Period size: 51 Copynumber: 3.9 Consensus size: 50
7083883 TAAATGATAC
* * * * *
7083893 CCGGTTCACATAGTATCCTGCACATAGTACTACACATGTGACCATTTTCAT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA-TATCAT
* * * *
7083944 CCGATACACGTAGTAGCCTGCACATAGTACTACACACGTAATCGA-AGCTAT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGA-CCATATC-AT
* * * * * *
7083995 TCGGTACGCATAGTAGTCTGCACATAGTACTACACATGCGACC-TATCATT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATATCA-T
*
7084045 CCGGTACACGTAGTACCCTGCACATAGTACTACACACGTGACC
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACC
7084088 TAGCAACTTC
Statistics
Matches: 114, Mismatches: 26, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
49 1 0.01
50 41 0.36
51 70 0.61
52 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (50 bp):
CCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATATCAT
Found at i:7084077 original size:101 final size:101
Alignment explanation
Indices: 7083901--7084083 Score: 289
Period size: 101 Copynumber: 1.8 Consensus size: 101
7083891 ACCCGGTTCA
* * *
7083901 CATAGTATCCTGCACATAGTACTACACATGTGACCATTTTCATCCGATACACGTAGTAGCCTGCA
1 CATAGTATCCTGCACATAGTACTACACATGCGACCA-TATCATCCGATACACGTAGTACCCTGCA
7083966 CATAGTACTACACACGTAATCGAAGCTATTCGGTACG
65 CATAGTACTACACACGTAATCGAAGCTATTCGGTACG
*
7084003 CATAGTAGT-CTGCACATAGTACTACACATGCGACC-TATCATTCCGGTACACGTAGTACCCTGC
1 CATAGTA-TCCTGCACATAGTACTACACATGCGACCATATCA-TCCGATACACGTAGTACCCTGC
7084066 ACATAGTACTACACACGT
64 ACATAGTACTACACACGT
7084084 GACCTAGCAA
Statistics
Matches: 75, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
100 4 0.05
101 38 0.51
102 32 0.43
103 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (101 bp):
CATAGTATCCTGCACATAGTACTACACATGCGACCATATCATCCGATACACGTAGTACCCTGCAC
ATAGTACTACACACGTAATCGAAGCTATTCGGTACG
Found at i:7088291 original size:23 final size:23
Alignment explanation
Indices: 7088265--7088314 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
7088255 ATAAGTGTCA
*
7088265 CACTGATATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
7088288 CACTGAAATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
7088311 CACT
1 CACT
7088315 AATCAATAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (23 bp):
CACTGAAATGTAGCCGAAGCTAC
Found at i:7088564 original size:18 final size:17
Alignment explanation
Indices: 7088538--7088576 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
7088528 ATTTTCCTTC
7088538 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
7088555 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
7088573 CACA
1 CACA
7088577 ATTTATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:7090472 original size:24 final size:25
Alignment explanation
Indices: 7090388--7090473 Score: 88
Period size: 24 Copynumber: 3.5 Consensus size: 25
7090378 GCTTATCCGG
* *
7090388 GCAATATAACGGGAAGCTCACAAAGA
1 GCAATATAACGGGTAGCTC-CGAAGA
* * * *
7090414 GC-CTATAACGAGTAACTCTGAAGA
1 GCAATATAACGGGTAGCTCCGAAGA
7090438 GCAAT-TAACGGGTAGCTCCGAAGA
1 GCAATATAACGGGTAGCTCCGAAGA
7090462 GCAAT-TAACGGG
1 GCAATATAACGGG
7090474 AAGTTCAAGC
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
24 34 0.69
25 13 0.27
26 2 0.04
ACGTcount: A:0.38, C:0.20, G:0.26, T:0.16
Consensus pattern (25 bp):
GCAATATAACGGGTAGCTCCGAAGA
Found at i:7096250 original size:18 final size:18
Alignment explanation
Indices: 7096223--7096264 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7096213 GGCCCCAGCG
* * *
7096223 ATGGGGATGGGGATGGGT
1 ATGGGTATGGGCATGGGC
7096241 ATGGGTATGGGCATGGGC
1 ATGGGTATGGGCATGGGC
7096259 ATGGGT
1 ATGGGT
7096265 GTCATGGACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.17, C:0.05, G:0.55, T:0.24
Consensus pattern (18 bp):
ATGGGTATGGGCATGGGC
Found at i:7099105 original size:5 final size:5
Alignment explanation
Indices: 7099095--7099120 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
7099085 CAACTCTCTT
7099095 TTTTC TTTTC TTTTC TTTTC TTTTC T
1 TTTTC TTTTC TTTTC TTTTC TTTTC T
7099121 AACTCTCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTC
Found at i:7101015 original size:22 final size:21
Alignment explanation
Indices: 7100990--7101035 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
7100980 AAATTGTTGC
* *
7100990 ATTTGTTTTGATATTGGTCTTG
1 ATTTGTTCTGAAATT-GTCTTG
*
7101012 ATTTGTTCTGAAATTGTTTTG
1 ATTTGTTCTGAAATTGTCTTG
7101033 ATT
1 ATT
7101036 GTCTGCTGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.17, C:0.04, G:0.20, T:0.59
Consensus pattern (21 bp):
ATTTGTTCTGAAATTGTCTTG
Found at i:7101049 original size:23 final size:23
Alignment explanation
Indices: 7101021--7101104 Score: 132
Period size: 23 Copynumber: 3.7 Consensus size: 23
7101011 GATTTGTTCT
7101021 GAAATTGTTTTGATTGTCTGCTG
1 GAAATTGTTTTGATTGTCTGCTG
* * *
7101044 GAAATTGGTATGATTGGCTGCTG
1 GAAATTGTTTTGATTGTCTGCTG
7101067 GAAATTGTTTTGATTGTCTGCTG
1 GAAATTGTTTTGATTGTCTGCTG
*
7101090 GAAATTGTGTTGATT
1 GAAATTGTTTTGATT
7101105 TGTTTATGTT
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 54 1.00
ACGTcount: A:0.20, C:0.07, G:0.29, T:0.44
Consensus pattern (23 bp):
GAAATTGTTTTGATTGTCTGCTG
Found at i:7105500 original size:24 final size:25
Alignment explanation
Indices: 7105465--7105512 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
7105455 TTATGAAATT
7105465 TAATATTAATTA-TTAAATTATATG
1 TAATATTAATTATTTAAATTATATG
7105489 TAATAATT-ATTATTTTAAATTATA
1 TAAT-ATTAATTA-TTTAAATTATA
7105513 CAAATTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 8 0.38
25 3 0.14
26 10 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (25 bp):
TAATATTAATTATTTAAATTATATG
Found at i:7105571 original size:28 final size:27
Alignment explanation
Indices: 7105540--7105612 Score: 62
Period size: 28 Copynumber: 2.7 Consensus size: 27
7105530 ACTTATTAGT
7105540 TATAATTATTTTAAATTTTATGTAATCA
1 TATAATTATTTTAAATTTTATGTAAT-A
* * *
7105568 TAT-ATT-TTAATTAAAATATATTTAATA
1 TATAATTATT--TTAAATTTTATGTAATA
*
7105595 T-TAATTATTTCAAATTTT
1 TATAATTATTTTAAATTTT
7105613 CATTTATAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 10
0.69 0.12 0.20
Matches are distributed among these distances:
26 9 0.26
27 8 0.23
28 18 0.51
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (27 bp):
TATAATTATTTTAAATTTTATGTAATA
Found at i:7105708 original size:16 final size:16
Alignment explanation
Indices: 7105687--7105728 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
7105677 TTATTAAATT
*
7105687 ATATATTTTAATTATA
1 ATATATTTTAATAATA
7105703 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
7105718 AT-TATGTTTAA
1 ATATAT-TTTAA
7105729 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:7105713 original size:15 final size:15
Alignment explanation
Indices: 7105678--7105719 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
7105668 TTAAGAATTT
*
7105678 TATTAAATTAT-ATA
1 TATTTAATTATAATA
7105692 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
7105706 TATTTAATAATAAT
1 TATTTAATTATAAT
7105720 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:7105946 original size:18 final size:17
Alignment explanation
Indices: 7105918--7105952 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7105908 ATTATTAAGA
*
7105918 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
7105935 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
7105953 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:7106209 original size:16 final size:16
Alignment explanation
Indices: 7106188--7106223 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
7106178 GATTTGCTAT
7106188 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
7106204 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
7106220 TACA
1 TACA
7106224 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:7110237 original size:39 final size:40
Alignment explanation
Indices: 7110103--7110237 Score: 121
Period size: 40 Copynumber: 3.4 Consensus size: 40
7110093 GTTTGGAACA
* * * *
7110103 AAAGCGCCACAAAAAATCGAGCATTAGCGGCGATTTAGCC
1 AAAGCGCCACAAAAAATAGAGCATTAGCGGCGTTTTATCT
* * ** *
7110143 AAAGCGCCGCTAAAGGTAGAGCATCAGCGGCGATTTT-TCT
1 AAAGCGCCACAAAAAATAGAGCATTAGCGGCG-TTTTATCT
* * * * *
7110183 GAAGCGCCGCTAAAAATAG-GAATTAGCGGCGTTTTATAT
1 AAAGCGCCACAAAAAATAGAGCATTAGCGGCGTTTTATCT
7110222 AAAGCGCCACAAAAAA
1 AAAGCGCCACAAAAAA
7110238 CCTAAGAACA
Statistics
Matches: 75, Mismatches: 18, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
38 4 0.05
39 25 0.33
40 43 0.57
41 3 0.04
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (40 bp):
AAAGCGCCACAAAAAATAGAGCATTAGCGGCGTTTTATCT
Found at i:7110361 original size:41 final size:41
Alignment explanation
Indices: 7110276--7110514 Score: 245
Period size: 41 Copynumber: 5.8 Consensus size: 41
7110266 TTTTTTAAAC
* ** *
7110276 CTTTAGCGGCGTTTTCATCTAAGCGCCGCTAATTTTCAG-AT
1 CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTC-GTGT
7110317 CTTTCA-CGGCGTTTTTATCTAAGCGCCGCTAATGCTCGTGT
1 CTTT-AGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGTGT
*
7110358 CTTTAGCGGCGTTTTTATCTGAA-CGCCGCTAATGCTC-TGGC
1 CTTTAGCGGCGTTTTTATCT-AAGCGCCGCTAATGCTCGT-GT
* *
7110399 CTTTGGCGGCGTTTTTATATAAGCGCCGCTAATGCTCG-GAT
1 CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGTG-T
* * * * * * *
7110440 CTTTAGCAGCGTTTTTAACTGAGTGCCACTAATCCTCTTGT
1 CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGTGT
* * *
7110481 CTTCAGCGGCGTTTGTAGCTAAGCGCCGCTAATG
1 CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATG
7110515 TATTTATCTT
Statistics
Matches: 164, Mismatches: 25, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
40 6 0.04
41 154 0.94
42 4 0.02
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGTGT
Found at i:7110494 original size:123 final size:123
Alignment explanation
Indices: 7110275--7110514 Score: 304
Period size: 123 Copynumber: 2.0 Consensus size: 123
7110265 ATTTTTTAAA
* ** * *
7110275 CCTTTAGCGGCGTTTTCATCTAAGCGCCGCTAATTTTCAGATCTTTCACGGCGTTTTTATCTAAG
1 CCTTTAGCGGCGTTTTCATATAAGCGCCGCTAATGCTCAGATCTTTCACAGCGTTTTTAACTAAG
* * * * *
7110340 CGCCGCTAATGCTCGTGTCTTTAGCGGCGTTTTTATCTGAA-CGCCGCTAATGCTCTGG
66 CGCCACTAATCCTCGTGTCTTCAGCGGCGTTTGTAGCT-AAGCGCCGCTAATGCTCTGG
* * * *
7110398 CCTTTGGCGGCGTTTTTATATAAGCGCCGCTAATGCTCGGATCTTT-AGCAGCGTTTTTAACTGA
1 CCTTTAGCGGCGTTTTCATATAAGCGCCGCTAATGCTCAGATCTTTCA-CAGCGTTTTTAACTAA
* *
7110462 GTGCCACTAATCCTCTTGTCTTCAGCGGCGTTTGTAGCTAAGCGCCGCTAATG
65 GCGCCACTAATCCTCGTGTCTTCAGCGGCGTTTGTAGCTAAGCGCCGCTAATG
7110515 TATTTATCTT
Statistics
Matches: 99, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
122 3 0.03
123 96 0.97
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (123 bp):
CCTTTAGCGGCGTTTTCATATAAGCGCCGCTAATGCTCAGATCTTTCACAGCGTTTTTAACTAAG
CGCCACTAATCCTCGTGTCTTCAGCGGCGTTTGTAGCTAAGCGCCGCTAATGCTCTGG
Found at i:7111046 original size:15 final size:15
Alignment explanation
Indices: 7111025--7111062 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
7111015 TTTAAGGTTA
7111025 ATTTAGGGG-TTAGAG
1 ATTTAGGGGATT-GAG
*
7111040 GTTTAGGGGATTGAG
1 ATTTAGGGGATTGAG
7111055 ATTTAGGG
1 ATTTAGGG
7111063 TTTTAACGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 18 0.90
16 2 0.10
ACGTcount: A:0.24, C:0.00, G:0.42, T:0.34
Consensus pattern (15 bp):
ATTTAGGGGATTGAG
Found at i:7111873 original size:30 final size:31
Alignment explanation
Indices: 7111808--7111874 Score: 77
Period size: 30 Copynumber: 2.2 Consensus size: 31
7111798 AGGGTTATGC
7111808 TTTA-GGGGTTAATGGATTTAGGGGTAAGGG
1 TTTAGGGGGTTAATGGATTTAGGGGTAAGGG
* * *
7111838 GTTAGGGGGTT-ATGGATTT-GAGGTTTAGGG
1 TTTAGGGGGTTAATGGATTTAG-GGGTAAGGG
7111868 TTTAGGG
1 TTTAGGG
7111875 TTTCAACGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
29 1 0.03
30 24 0.77
31 6 0.19
ACGTcount: A:0.19, C:0.00, G:0.45, T:0.36
Consensus pattern (31 bp):
TTTAGGGGGTTAATGGATTTAGGGGTAAGGG
Found at i:7115102 original size:20 final size:20
Alignment explanation
Indices: 7115079--7115118 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
7115069 GAACTATAGT
7115079 AAGAATAAGAGAAAAGAGGA
1 AAGAATAAGAGAAAAGAGGA
7115099 AAGAATAAGAGAAAAGAGGA
1 AAGAATAAGAGAAAAGAGGA
7115119 GACACAAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.30, T:0.05
Consensus pattern (20 bp):
AAGAATAAGAGAAAAGAGGA
Found at i:7115251 original size:17 final size:17
Alignment explanation
Indices: 7115231--7115290 Score: 50
Period size: 17 Copynumber: 3.3 Consensus size: 17
7115221 ATTATACATA
7115231 AATTACATAACTTAATT
1 AATTACATAACTTAATT
* *
7115248 AATTA-ATTAGTATTATACATA
1 AATTACA-TA--ACT-TA-ATT
7115269 AATTACATAACTTAATT
1 AATTACATAACTTAATT
7115286 AATTA
1 AATTA
7115291 ATATTATACA
Statistics
Matches: 33, Mismatches: 4, Indels: 12
0.67 0.08 0.24
Matches are distributed among these distances:
16 1 0.03
17 14 0.42
18 2 0.06
19 4 0.12
20 2 0.06
21 9 0.27
22 1 0.03
ACGTcount: A:0.48, C:0.08, G:0.02, T:0.42
Consensus pattern (17 bp):
AATTACATAACTTAATT
Found at i:7115263 original size:38 final size:38
Alignment explanation
Indices: 7115215--7115370 Score: 185
Period size: 34 Copynumber: 4.1 Consensus size: 38
7115205 CATAACTTAC
7115215 ATTAATATTATACATAAATTACATAACTTAATTAATTA
1 ATTAATATTATACATAAATTACATAACTTAATTAATTA
*
7115253 ATTAGTATTATACATAAATTACATAAC----TTAATTA
1 ATTAATATTATACATAAATTACATAACTTAATTAATTA
* * *
7115287 ATTAATATTATACATAACTTACATTAATATTATACATAACTTA
1 ATTAATATTATACATAAATTACA-TAA-CTTA-A-TTAA-TTA
*
7115330 CATTAATATTATACATAAATTACATTACTTAATTAATTA
1 -ATTAATATTATACATAAATTACATAACTTAATTAATTA
7115369 AT
1 AT
7115371 ATTATACATA
Statistics
Matches: 99, Mismatches: 9, Indels: 20
0.77 0.07 0.16
Matches are distributed among these distances:
34 28 0.28
35 3 0.03
38 28 0.28
39 3 0.03
40 3 0.03
41 1 0.01
42 6 0.06
43 5 0.05
44 22 0.22
ACGTcount: A:0.47, C:0.10, G:0.01, T:0.42
Consensus pattern (38 bp):
ATTAATATTATACATAAATTACATAACTTAATTAATTA
Found at i:7115360 original size:78 final size:79
Alignment explanation
Indices: 7115201--7115477 Score: 314
Period size: 78 Copynumber: 3.6 Consensus size: 79
7115191 ATATATATAG
* * * *
7115201 ATTACATAACTTACATTAATATTATACATAAATTACA-TAA-CTTA-A-TTAATTA-ATTAGTAT
1 ATTACATAACTTACATTAATATTATACATAACTTACATTAATATTATACATAATTACATTAATAT
7115261 TATACATAAATTAC
66 TATACATAAATTAC
* *
7115275 ATAACTTAA-TTA-ATTAATATTATACATAACTTACATTAATATTATACATAACTTACATTAATA
1 ATTACATAACTTACATTAATATTATACATAACTTACATTAATATTATACATAA-TTACATTAATA
7115338 TTATACATAAATTAC
65 TTATACATAAATTAC
* *
7115353 ATTACTTAA-TTA-ATTAATATTATACATAACATACATTAATATTATACATAAATTACA-TAACT
1 ATTACATAACTTACATTAATATTATACATAACTTACATTAATATTATACAT-AATTACATTAA--
*
7115415 TAATTA-A-TTAATATT--
63 T-ATTATACATAA-ATTAC
7115430 A-TACATAACTTACATTAATATTATACATAACTTACATTAATATTATAC
1 ATTACATAACTTACATTAATATTATACATAACTTACATTAATATTATAC
7115478 GATTATCTAA
Statistics
Matches: 179, Mismatches: 11, Indels: 22
0.84 0.05 0.10
Matches are distributed among these distances:
72 22 0.12
73 6 0.03
74 10 0.06
75 1 0.01
76 9 0.05
77 10 0.06
78 110 0.61
79 7 0.04
80 4 0.02
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.41
Consensus pattern (79 bp):
ATTACATAACTTACATTAATATTATACATAACTTACATTAATATTATACATAATTACATTAATAT
TATACATAAATTAC
Found at i:7115369 original size:56 final size:56
Alignment explanation
Indices: 7115203--7115468 Score: 337
Period size: 56 Copynumber: 4.7 Consensus size: 56
7115193 ATATATAGAT
*
7115203 TACATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATTAGTATTA
1 TACATAACTTACATTAATATTATACATAAATTACATTACTTAATTAATT-A--A-TATTA
* * *
7115263 TACATAAATTACA-TAACTTAATTA-A-TTAATATT--A-TACATAACTTACATTAATATTA
1 TACATAACTTACATTAA--T-ATTATACATAA-ATTACATTACTTAA-TTA-ATTAATATTA
7115319 TACATAACTTACATTAATATTATACATAAATTACATTACTTAATTAATTAATATTA
1 TACATAACTTACATTAATATTATACATAAATTACATTACTTAATTAATTAATATTA
* *
7115375 TACATAACATACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTA
1 TACATAACTTACATTAATATTATACATAAATTACATTACTTAATTAATTAATATTA
*
7115431 TACATAACTTACATTAATATTATACATAACTTACATTA
1 TACATAACTTACATTAATATTATACATAAATTACATTA
7115469 ATATTATACG
Statistics
Matches: 182, Mismatches: 12, Indels: 28
0.82 0.05 0.13
Matches are distributed among these distances:
54 4 0.02
55 5 0.03
56 119 0.65
57 8 0.04
58 11 0.06
59 8 0.04
60 18 0.10
61 5 0.03
62 4 0.02
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.41
Consensus pattern (56 bp):
TACATAACTTACATTAATATTATACATAAATTACATTACTTAATTAATTAATATTA
Found at i:7115490 original size:22 final size:22
Alignment explanation
Indices: 7115287--7115477 Score: 157
Period size: 22 Copynumber: 8.6 Consensus size: 22
7115277 AACTTAATTA
7115287 ATTAATATTATACATAACTTAC
1 ATTAATATTATACATAACTTAC
7115309 ATTAATATTATACATAACTTAC
1 ATTAATATTATACATAACTTAC
*
7115331 ATTAATATTATACATAAATTAC
1 ATTAATATTATACATAACTTAC
* *
7115353 ATTACTTAATTAATTA-AT-ATTATAC
1 ATTA-AT-ATT-A-TACATAACT-TAC
* * *
7115378 A-TAACATACATTA-AT-ATTATAC
1 ATTAATAT-TA-TACATAACT-TAC
*
7115400 A-TAA-A-T-TACATAACTTAATTA
1 ATTAATATTATACATAACTT-A--C
7115421 ATTAATATTATACATAACTTAC
1 ATTAATATTATACATAACTTAC
7115443 ATTAATATTATACATAACTTAC
1 ATTAATATTATACATAACTTAC
7115465 ATTAATATTATAC
1 ATTAATATTATAC
7115478 GATTATCTAA
Statistics
Matches: 144, Mismatches: 10, Indels: 30
0.78 0.05 0.16
Matches are distributed among these distances:
17 2 0.01
18 3 0.02
19 3 0.02
21 2 0.01
22 104 0.72
23 2 0.01
24 9 0.06
25 17 0.12
26 2 0.01
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (22 bp):
ATTAATATTATACATAACTTAC
Found at i:7117228 original size:66 final size:65
Alignment explanation
Indices: 7117121--7117286 Score: 217
Period size: 66 Copynumber: 2.5 Consensus size: 65
7117111 GAGCAAATTA
* * * *
7117121 CACAACTTAAAGCGGAGGCAACATCGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCCA
1 CACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAG-TATGAAGAACTCCA
7117185 G
65 G
*
7117186 CTACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACGAAAGTATGAAGAACTCCA
1 C-ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCA
7117251 G
65 G
* * * *
7117252 CAGCAGCTTAAAACAGATGCGGCAGCAAGAGAAGC
1 CA-CAACTTAAAGCAGATGCAGCAGCGAGAGAAGC
7117287 AGAAGCGGCA
Statistics
Matches: 89, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
65 2 0.02
66 83 0.93
67 4 0.04
ACGTcount: A:0.41, C:0.20, G:0.26, T:0.13
Consensus pattern (65 bp):
CACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCAG
Found at i:7117294 original size:21 final size:21
Alignment explanation
Indices: 7117265--7117306 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
7117255 CAGCTTAAAA
*
7117265 CAGATGCGGCAGCAAGAGAAG
1 CAGAAGCGGCAGCAAGAGAAG
*
7117286 CAGAAGCGGCAGTAAGAGAAG
1 CAGAAGCGGCAGCAAGAGAAG
7117307 TACAGGCTGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.17, G:0.38, T:0.05
Consensus pattern (21 bp):
CAGAAGCGGCAGCAAGAGAAG
Found at i:7117327 original size:21 final size:21
Alignment explanation
Indices: 7117303--7117374 Score: 99
Period size: 21 Copynumber: 3.4 Consensus size: 21
7117293 GGCAGTAAGA
*
7117303 GAAGTACAGGCTGCAGCGAGG
1 GAAGTAGAGGCTGCAGCGAGG
* **
7117324 GAAGCAGAGGCTATAGCGAGG
1 GAAGTAGAGGCTGCAGCGAGG
7117345 GAAGTAGAGGCTGCAGCGAGG
1 GAAGTAGAGGCTGCAGCGAGG
*
7117366 GAAGCAGAG
1 GAAGTAGAG
7117375 CAGTGTCAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.32, C:0.15, G:0.44, T:0.08
Consensus pattern (21 bp):
GAAGTAGAGGCTGCAGCGAGG
Found at i:7117814 original size:86 final size:86
Alignment explanation
Indices: 7117722--7117933 Score: 280
Period size: 86 Copynumber: 2.5 Consensus size: 86
7117712 TTAAAGGTGT
** * * * *
7117722 TGGTCTTTAGTAGCGTTTTTGGTAAAAGCGCTGTTAAAGATAAGGGTCTTTAGCGGCGTTTGTGG
1 TGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGTGG
7117787 AAAAAGCACCACTAAAGATCA
66 AAAAAGCACCACTAAAGATCA
* * * *
7117808 TGGTCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCGTTTGTGG
1 TGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGTGG
** * *
7117873 CCAAAGCGCCACTAGAGATCA
66 AAAAAGCACCACTAAAGATCA
* *
7117894 GGGTCTTTTGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGA
1 TGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGA
7117934 CCCTGATCTT
Statistics
Matches: 109, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
86 109 1.00
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (86 bp):
TGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGTGG
AAAAAGCACCACTAAAGATCA
Found at i:7117944 original size:43 final size:43
Alignment explanation
Indices: 7117723--7117933 Score: 233
Period size: 43 Copynumber: 4.9 Consensus size: 43
7117713 TAAAGGTGTT
** * * *** *
7117723 GGTCTTTAGTAGCGTTTTTGGTAAAAGCGCTGTTAAAGATAAG
1 GGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGATCAG
* * *
7117766 GGTCTTTAGCGGCGTTTGTGGAAAAAGCACCACTAAAGATCAT
1 GGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGATCAG
* * *
7117809 GGTCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATTAG
1 GGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGATCAG
* * ** *
7117852 GTTCTTTAGTGGCGTTTGTGGCCAAAGCGCCACTAGAGATCAG
1 GGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGATCAG
* *
7117895 GGTCTTTTGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGA
1 GGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGA
7117934 CCCTGATCTT
Statistics
Matches: 138, Mismatches: 30, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 138 1.00
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (43 bp):
GGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGATCAG
Found at i:7118883 original size:17 final size:15
Alignment explanation
Indices: 7118856--7118894 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
7118846 ATATAAGAAC
*
7118856 ATTTTATTATTAAATT
1 ATTTTAATATT-AATT
7118872 ATATTTAATATTAATT
1 AT-TTTAATATTAATT
7118888 ATTTTAA
1 ATTTTAA
7118895 ATTGTATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 5 0.24
16 8 0.38
17 8 0.38
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
ATTTTAATATTAATT
Found at i:7118937 original size:44 final size:43
Alignment explanation
Indices: 7118888--7119028 Score: 124
Period size: 44 Copynumber: 3.1 Consensus size: 43
7118878 AATATTAATT
7118888 ATTTTAAATTGTATAAATTCATATAAGAAAATTTATTATCAAGA
1 ATTTTAAATT-TATAAATTCATATAAGAAAATTTATTATCAAGA
* * * * * **
7118932 ATTTTATGAAATTATATA-TCATTATTAA-ATTATATTTAATATTAATT
1 ATTTTA--AATTTATAAATTCA-TA-TAAGA--AAATTTATTATCAAGA
*
7118979 ATTTTAAATTATATAAATTCATATAAGAAAATTTATTATCACGA
1 ATTTTAAATT-TATAAATTCATATAAGAAAATTTATTATCAAGA
7119023 ATTTTA
1 ATTTTA
7119029 TGAAATTATA
Statistics
Matches: 73, Mismatches: 15, Indels: 18
0.69 0.14 0.17
Matches are distributed among these distances:
44 25 0.34
45 14 0.19
46 14 0.19
47 20 0.27
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.46
Consensus pattern (43 bp):
ATTTTAAATTTATAAATTCATATAAGAAAATTTATTATCAAGA
Found at i:7118961 original size:91 final size:94
Alignment explanation
Indices: 7118861--7119110 Score: 434
Period size: 91 Copynumber: 2.7 Consensus size: 94
7118851 AGAACATTTT
*
7118861 ATTATTAAATTATATTTAATATTAATTATTTTAAATTGTATAAATTCATATAAGAAAATTTATTA
1 ATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAATTCATATAAGAAAATTTATTA
7118926 TCAAGAATTTTATGAAA-T-TATA-TATC
66 TCAAGAATTTTATGAAATTATATATTATC
7118952 ATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAATTCATATAAGAAAATTTATTA
1 ATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAATTCATATAAGAAAATTTATTA
* *
7119017 TCACGAATTTTATGAAATTATATATTATT
66 TCAAGAATTTTATGAAATTATATATTATC
* *
7119046 ATTATTAAATTATATTTAATAATAATTATTTTAAATTATACAAATTCATATAAGAAAATTTATTA
1 ATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAATTCATATAAGAAAATTTATTA
7119111 GTTATAATTA
Statistics
Matches: 151, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
91 80 0.53
92 1 0.01
93 4 0.03
94 66 0.44
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (94 bp):
ATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAATTCATATAAGAAAATTTATTA
TCAAGAATTTTATGAAATTATATATTATC
Found at i:7118969 original size:47 final size:47
Alignment explanation
Indices: 7118918--7119063 Score: 133
Period size: 44 Copynumber: 3.1 Consensus size: 47
7118908 ATATAAGAAA
*
7118918 ATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 ATTTATTATCAAGAATTTTATGAAATTATATATAATTATTAAATTAT
* * ** *
7118965 ATTTAATATTAATTA-TTT-T-AAATTATATA-AATTCATATAAGA--AA
1 ATTTATTATCAAGAATTTTATGAAATTATATATAATT-AT-TAA-ATTAT
*
7119009 ATTTATTATCACGAATTTTATGAAATTATATATTATTATTATTAAATTAT
1 ATTTATTATCAAGAATTTTATGAAATTATATA-TA--ATTATTAAATTAT
7119059 ATTTA
1 ATTTA
7119064 ATAATAATTA
Statistics
Matches: 75, Mismatches: 12, Indels: 21
0.69 0.11 0.19
Matches are distributed among these distances:
43 3 0.04
44 23 0.31
45 7 0.09
46 5 0.07
47 21 0.28
48 1 0.01
49 4 0.05
50 8 0.11
51 3 0.04
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.49
Consensus pattern (47 bp):
ATTTATTATCAAGAATTTTATGAAATTATATATAATTATTAAATTAT
Found at i:7119073 original size:21 final size:21
Alignment explanation
Indices: 7119031--7119073 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
7119021 GAATTTTATG
* *
7119031 AAATTATATATTATTATTATT
1 AAATTATATATTATAATAATT
7119052 AAATTATAT-TTAATAATAATT
1 AAATTATATATT-ATAATAATT
7119073 A
1 A
7119074 TTTTAAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
AAATTATATATTATAATAATT
Found at i:7119118 original size:47 final size:45
Alignment explanation
Indices: 7118883--7119129 Score: 168
Period size: 47 Copynumber: 5.3 Consensus size: 45
7118873 TATTTAATAT
*
7118883 TAATTATTTTAAATTGTATAAATTCATATAAGAAAATTTATTATCAA
1 TAATTATTTTAAATTATA-AAATTCATATAAGAAAATTTATTAT-AA
* * * ** *
7118930 GAATT-TTATGAAATTAT-ATA-TCAT-T-ATTAAATTATATTTAATAT
1 TAATTATT-TTAAATTATAAAATTCATATAAGAAAATT-TA-TT-ATAA
*
7118974 TAATTATTTTAAATTATATAAATTCATATAAGAAAATTTATTATCAC
1 TAATTATTTTAAATTATA-AAATTCATATAAGAAAATTTATTAT-AA
* * * * **
7119021 GAATT-TTATGAAATTAT-ATATT-ATTATTATTAAATTATATTTAATAA
1 TAATTATT-TTAAATTATAAAATTCA-TATAAGAAAATT-TA-TT-ATAA
*
7119068 TAATTATTTTAAATTATACAAATTCATATAAGAAAATTTATTAGTTA
1 TAATTATTTTAAATTATA-AAATTCATATAAGAAAATTTATTA-TAA
7119115 TAATTATTTTAAATT
1 TAATTATTTTAAATT
7119130 TTATTAAATC
Statistics
Matches: 152, Mismatches: 27, Indels: 42
0.69 0.12 0.19
Matches are distributed among these distances:
42 6 0.04
43 3 0.02
44 20 0.13
45 19 0.12
46 11 0.07
47 64 0.42
48 9 0.06
49 19 0.12
50 1 0.01
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.48
Consensus pattern (45 bp):
TAATTATTTTAAATTATAAAATTCATATAAGAAAATTTATTATAA
Found at i:7119247 original size:16 final size:15
Alignment explanation
Indices: 7119226--7119255 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
7119216 TAAATTCATA
7119226 TAAGAATTTTGATTAT
1 TAAGAATTTT-ATTAT
7119242 TAAGAATTTTATTA
1 TAAGAATTTTATTA
7119256 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (15 bp):
TAAGAATTTTATTAT
Found at i:7119264 original size:120 final size:120
Alignment explanation
Indices: 7119126--7119542 Score: 676
Period size: 120 Copynumber: 3.5 Consensus size: 120
7119116 AATTATTTTA
* * * *
7119126 AATTTTATTAAATCATATATTTTAATTAAAATATTTTTAATATTAATTACT-TCAAATTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTA-TGTTAAATTATATTT
* *
7119190 TATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATTTTGATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
* *
7119246 AATTTTATTAAATTATATATTTTAATTAAAATACATTTAATAATAATTATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
* *
7119311 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTTTTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
* *
7119366 AATTTTACTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
7119431 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAG-ATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
* *
7119485 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATTATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
7119543 ATGATTAAAT
Statistics
Matches: 277, Mismatches: 18, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
119 63 0.23
120 214 0.77
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
Found at i:7119401 original size:16 final size:16
Alignment explanation
Indices: 7119380--7119426 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
7119370 TTACTAAATT
7119380 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
7119396 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
7119411 AT-TATGTTAAATTATA
1 ATATAT-TTTAATTATA
7119427 TTTTATAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.42
16 13 0.50
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:7119406 original size:15 final size:15
Alignment explanation
Indices: 7119376--7119426 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
7119366 AATTTTACTA
7119376 AATTAT-ATAT-TTT
1 AATTATAATATATTT
7119389 AATTATAATATATTT
1 AATTATAATATATTT
*
7119404 AATAATAAT-TATGTT
1 AATTATAATATAT-TT
7119419 AAATTATA
1 -AATTATA
7119427 TTTTATAGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
13 6 0.19
14 7 0.22
15 13 0.41
16 6 0.19
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (15 bp):
AATTATAATATATTT
Found at i:7119775 original size:16 final size:16
Alignment explanation
Indices: 7119754--7119790 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
7119744 CTGATTTGCT
7119754 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
7119770 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
7119786 ATTAC
1 ATTAC
7119791 AGCGAACCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.22, C:0.35, G:0.05, T:0.38
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:7125300 original size:25 final size:25
Alignment explanation
Indices: 7125238--7125322 Score: 73
Period size: 25 Copynumber: 3.3 Consensus size: 25
7125228 GTATGCGCTC
*
7125238 AAAAAA-ATCAAAATCAAAATAAAA
1 AAAAAAGATCAAAATAAAAATAAAA
**
7125262 AAAAAAGAAGAAAATAAAAATAAAA
1 AAAAAAGATCAAAATAAAAATAAAA
** * *
7125287 AATCAAGGTCAAAATGAAAATGAAAA
1 AAAAAAGATCAAAATAAAAAT-AAAA
7125313 TGAAAAAAGA
1 --AAAAAAGA
7125323 GAGAAGAAAA
Statistics
Matches: 45, Mismatches: 12, Indels: 4
0.74 0.20 0.07
Matches are distributed among these distances:
24 6 0.13
25 30 0.67
26 4 0.09
28 5 0.11
ACGTcount: A:0.74, C:0.05, G:0.09, T:0.12
Consensus pattern (25 bp):
AAAAAAGATCAAAATAAAAATAAAA
Found at i:7125319 original size:13 final size:13
Alignment explanation
Indices: 7125297--7125355 Score: 61
Period size: 13 Copynumber: 4.5 Consensus size: 13
7125287 AATCAAGGTC
*
7125297 AAAATG-AAAATG
1 AAAATGAAAAAAG
7125309 AAAATGAAAAAAG
1 AAAATGAAAAAAG
7125322 AGAGAA-GAAAAAAGG
1 A-A-AATGAAAAAA-G
7125337 AAAA-GAAAAAAG
1 AAAATGAAAAAAG
7125349 AAAATGA
1 AAAATGA
7125356 GAGGTCAAGG
Statistics
Matches: 41, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
12 11 0.27
13 17 0.41
14 9 0.22
15 4 0.10
ACGTcount: A:0.73, C:0.00, G:0.20, T:0.07
Consensus pattern (13 bp):
AAAATGAAAAAAG
Found at i:7127526 original size:88 final size:88
Alignment explanation
Indices: 7127400--7127672 Score: 417
Period size: 88 Copynumber: 3.1 Consensus size: 88
7127390 GGATCAGTGA
* * * *
7127400 AGATCGAA-A-ACAAACCTTACCTCCCTCAGTTGTAGTGGAGCCGGTTGAAGATAGCAGATATTG
1 AGATCGAAGACACAAACCTTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTG
*
7127463 CCTTCCTGCATCGACAGCGAAGC
66 CCTTCCTGCATCGACAGTGAAGC
* *
7127486 AGATCGAAGACACAAACCTTGCCTCCCTCGGTTGTAGTGGAGCTAGTTGAAGATAGCAGATCGTG
1 AGATCGAAGACACAAACCTTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTG
7127551 CCTTCCTGCATCGACAGTGAAGC
66 CCTTCCTGCATCGACAGTGAAGC
* *
7127574 AGAAT-GAAGACACAAACCTTGCCTCCCTCGGTTGTAATGGAGCTGGTTGAGGATAGCAGATCTT
1 AG-ATCGAAGACACAAACCTTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTT
* *
7127638 GCTTTCCTGCATTGACAGTGAAGC
65 GCCTTCCTGCATCGACAGTGAAGC
7127662 AGATCGAAGAC
1 AGATCGAAGAC
7127673 GGTGAATCTT
Statistics
Matches: 170, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
86 8 0.05
87 3 0.02
88 157 0.92
89 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.23
Consensus pattern (88 bp):
AGATCGAAGACACAAACCTTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTG
CCTTCCTGCATCGACAGTGAAGC
Found at i:7127853 original size:44 final size:44
Alignment explanation
Indices: 7127805--7128213 Score: 296
Period size: 44 Copynumber: 9.3 Consensus size: 44
7127795 GAAAATGGTG
7127805 AATCTTATCTCCCTGATG-TTACAGTGGAGCAGATTGAAGCCAGA
1 AATCTTATCTCCCTGA-GATTACAGTGGAGCAGATTGAAGCCAGA
* * * * *
7127849 AATCTTATCTTCCTTAGATTACAGCGGAGCAGATTGAAGCCGGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGA
* * * * ***
7127893 AATCCTATTTCCCTGAGATTACAGTGGAGC-GGTTTAAAATA-A
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGA
* * * * * * *
7127935 AGGATCTTATCTCTCTAAAATTACAGTAGAGTAGATTGTA-TCAG-
1 A--ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGA
* ** ** * *
7127979 -GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAG-AATTTCA
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCA---GA
* *
7128024 AATCTTATCTCCCTAAGGTTACAGTGGAGCAGATTGAAGCCAGA
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGA
* ** *
7128068 AATCTTATCTCCATGAGATTACAACGGAGCAGATTAAAGCCAGA
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGA
* * *
7128112 AATCTTATC-CCCTTGAGATTACAGCGGAGTAGATTGAAGCCAGT
1 AATCTTATCTCCC-TGAGATTACAGTGGAGCAGATTGAAGCCAGA
* * * * * * *
7128156 AATCCTATCTCACTGA-AGTTGCAGTGGAGCGGATTAAAACCACA
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCCAGA
*
7128200 GATCTTATCTCCCT
1 AATCTTATCTCCCT
7128214 AAGCAGTAGT
Statistics
Matches: 277, Mismatches: 73, Indels: 30
0.73 0.19 0.08
Matches are distributed among these distances:
41 29 0.10
42 1 0.00
43 9 0.03
44 200 0.72
45 6 0.02
46 31 0.11
47 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGA
Found at i:7127906 original size:88 final size:88
Alignment explanation
Indices: 7127805--7128216 Score: 329
Period size: 88 Copynumber: 4.7 Consensus size: 88
7127795 GAAAATGGTG
* * * *
7127805 AATCTTATCTCCCTGATG-TTACAGTGGAGCAGATTGAAGCCAGAAATCTTATCTTCCTTAGATT
1 AATCTTATCTCCCTGA-GATTACAGTGGAGCAGATTAAAGCCACAAATCTTATCTCCCTAAGATT
*
7127869 ACAGCGGAGCAGATTGAAGCCGGT
65 ACAGCGGAGCAGATTGAAGCCAGT
* * * * ** * *
7127893 AATCCTATTTCCCTGAGATTACAGTGGAGCGGTTTAAA-ATA-AAGGATCTTATCTCTCTAAAAT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAGCCACAA--ATCTTATCTCCCTAAGAT
** * * *
7127956 TACAGTAGAGTAGATTGTA-TCAG-
64 TACAGCGGAGCAGATTGAAGCCAGT
* ** *** * *
7127979 -GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAG-AATTTCAAATCTTATCTCCCTAAGG
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAGCCA---CAAATCTTATCTCCCTAAGA
* *
7128042 TTACAGTGGAGCAGATTGAAGCCAGA
63 TTACAGCGGAGCAGATTGAAGCCAGT
* ** * *
7128068 AATCTTATCTCCATGAGATTACAACGGAGCAGATTAAAGCCAGAAATCTTATC-CCCTTGAGATT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAGCCACAAATCTTATCTCCC-TAAGATT
*
7128132 ACAGCGGAGTAGATTGAAGCCAGT
65 ACAGCGGAGCAGATTGAAGCCAGT
* * * * * *
7128156 AATCCTATCTCACTGA-AGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCCCTAAG
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAGCCACAAATCTTATCTCCCTAAG
7128217 CAGTAGTGGA
Statistics
Matches: 247, Mismatches: 62, Indels: 30
0.73 0.18 0.09
Matches are distributed among these distances:
85 28 0.11
86 2 0.01
87 39 0.16
88 143 0.58
89 5 0.02
90 29 0.12
91 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (88 bp):
AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAGCCACAAATCTTATCTCCCTAAGATTA
CAGCGGAGCAGATTGAAGCCAGT
Found at i:7128245 original size:40 final size:40
Alignment explanation
Indices: 7128201--7128525 Score: 224
Period size: 40 Copynumber: 7.8 Consensus size: 40
7128191 AAAACCACAG
*
7128201 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAATCAA
* *
7128241 ATCTTATCTCCTTAAGCAGTAGTAGAGCAGA-CAAAAGAAATCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC----G-AATCAA
* ** * * ** * *
7128285 TTC-TATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAACCACTG
1 ATCTTATCTCCCT-AAGCAGTAGTGGAGCAGA-TCGAATCA--A
* * * *
7128328 ATTTTATCTCTCTAAGCAATAGTGGAGCAGATCGCATCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAATCAA
*
7128368 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAATC-A
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT---CG-AATCAA
* ** * ** *
7128411 ATCATATCTCCCTGAAGTTGTAGTGGAGTAGATTAAAACCACA
1 ATCTTATCTCCCT-AAGCAGTAGTGGAGCAGA-TCGAATCA-A
*
7128454 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAATCAA
* * *
7128495 GTCTTATCTCTCTAAGCAGTAGTGCAGCAGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
7128526 CTGAAGCTAC
Statistics
Matches: 216, Mismatches: 49, Indels: 40
0.71 0.16 0.13
Matches are distributed among these distances:
39 1 0.00
40 86 0.40
41 8 0.04
42 9 0.04
43 53 0.25
44 58 0.27
45 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (40 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAATCAA
Found at i:7128588 original size:127 final size:125
Alignment explanation
Indices: 7128156--7128576 Score: 576
Period size: 127 Copynumber: 3.3 Consensus size: 125
7128146 TGAAGCCAGT
* *
7128156 AATCCTATCTCACTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCCCTAAGCAGT
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCCCTAAGCAGT
**
7128221 AGTGGAGCAGATCGCATCAAATCTTATCTCCTTAAGCAGTAGTAGAGCAGACAAAAGAAATC
66 AGTGGAGCAGATCGCATCAAATCTTATCTCC-TAAGCAGTAGT-GAGCAGACTGAAGAAATC
* * * * * * *
7128283 AATTCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAACCACTGATTTTATCTCTCTAAGCAAT
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCCCTAAGCAGT
7128348 AGTGGAGCAGATCGCATCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-TAGAAGAAATC
66 AGTGGAGCAGATCGCATCAAATCTTATCT-CCTAAGCAGTAGT-GAGCAGACT-GAAGAAATC
* * *
7128410 AATCATATCTCCCTGAAGTTGTAGTGGAGTAGATTAAAACCACAGATCTTATCTCCCTAAGCAGT
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCCCTAAGCAGT
* **
7128475 AGTGGAGCAGATCGCATCAAGTCTTATCTCTCTAAGCAGTAGTGCAGCAGACTGAAGCTA-C
66 AGTGGAGCAGATCGCATCAAATCTTATCTC-CTAAGCAGTAGTG-AGCAGACTGAAGAAATC
* * *
7128536 TAACCCTATCTCCCTGAAGTTGCAGTGAAGCAAATTAAAAC
1 -AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAC
7128577 GATGAATCTT
Statistics
Matches: 259, Mismatches: 29, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
126 3 0.01
127 253 0.98
128 3 0.01
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.25
Consensus pattern (125 bp):
AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCCCTAAGCAGT
AGTGGAGCAGATCGCATCAAATCTTATCTCCTAAGCAGTAGTGAGCAGACTGAAGAAATC
Found at i:7129069 original size:22 final size:22
Alignment explanation
Indices: 7129044--7129090 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
7129034 GGAAACAGAA
*
7129044 ACAAACCCAAAACAAATCAAAT
1 ACAAACACAAAACAAATCAAAT
* *
7129066 ACAAATACAAAATAAATCAAAT
1 ACAAACACAAAACAAATCAAAT
7129088 ACA
1 ACA
7129091 TTAAACCAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.66, C:0.21, G:0.00, T:0.13
Consensus pattern (22 bp):
ACAAACACAAAACAAATCAAAT
Found at i:7130300 original size:40 final size:41
Alignment explanation
Indices: 7130245--7130353 Score: 161
Period size: 40 Copynumber: 2.7 Consensus size: 41
7130235 AAATTAAAAC
*
7130245 AAAAAATTTTAAAAAAAGTATTTTAAAAATATTTTAAAA-TT
1 AAAAAATTTTAAAAAAAGTATTTTAAAAA-ATTTAAAAATTT
*
7130286 AAAAAAATTT--AAAAAGTATTTTTAAAAAATTTAAAAATTT
1 AAAAAATTTTAAAAAAAGTA-TTTTAAAAAATTTAAAAATTT
7130326 AAAAAATTTTAAAAAAAGTATTTTAAAA
1 AAAAAATTTTAAAAAAAGTATTTTAAAA
7130354 TTATAAAAAT
Statistics
Matches: 61, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
39 16 0.26
40 20 0.33
41 17 0.28
42 8 0.13
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (41 bp):
AAAAAATTTTAAAAAAAGTATTTTAAAAAATTTAAAAATTT
Found at i:7130361 original size:40 final size:39
Alignment explanation
Indices: 7130227--7130370 Score: 158
Period size: 40 Copynumber: 3.7 Consensus size: 39
7130217 ACCAAAAATT
*
7130227 TATTTTAAAAA-TT-AAAA-CAAAAAATTTTAAAAAAAG
1 TATTTTAAAAATTTAAAAATTAAAAAATTTTAAAAAAAG
* *
7130263 TATTTTAAAAATATTTTAAAATTAAAAAAATTT--AAAAAG
1 TATTTT-AAAA-ATTTAAAAATTAAAAAATTTTAAAAAAAG
7130302 TATTTTTAAAAAATTTAAAAATTTAAAAAATTTTAAAAAAAG
1 TA-TTTT-AAAAATTTAAAAA-TTAAAAAATTTTAAAAAAAG
7130344 TATTTT-AAAATTATAAAAA-TAAAAAAT
1 TATTTTAAAAATT-TAAAAATTAAAAAAT
7130371 AAAAATATTT
Statistics
Matches: 94, Mismatches: 4, Indels: 18
0.81 0.03 0.16
Matches are distributed among these distances:
36 6 0.06
37 4 0.04
38 9 0.10
39 24 0.26
40 30 0.32
41 13 0.14
42 8 0.09
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.36
Consensus pattern (39 bp):
TATTTTAAAAATTTAAAAATTAAAAAATTTTAAAAAAAG
Found at i:7136706 original size:13 final size:13
Alignment explanation
Indices: 7136690--7136714 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7136680 AAAAATATTC
7136690 AAAAAAATAAAAT
1 AAAAAAATAAAAT
7136703 AAAAAAATAAAA
1 AAAAAAATAAAA
7136715 AGTTCATAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAAAATAAAAT
Found at i:7139465 original size:11 final size:11
Alignment explanation
Indices: 7139444--7139476 Score: 57
Period size: 11 Copynumber: 2.9 Consensus size: 11
7139434 ATATATATAC
7139444 TAAATAAAATAA
1 TAAA-AAAATAA
7139456 TAAAAAAATAA
1 TAAAAAAATAA
7139467 TAAAAAAATA
1 TAAAAAAATA
7139477 TTATTTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (11 bp):
TAAAAAAATAA
Found at i:7139850 original size:23 final size:23
Alignment explanation
Indices: 7139803--7139853 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
7139793 ACCTACTTTC
* * *
7139803 TTACTGTAGTAATTTCTGGGGTA
1 TTACAGTAGTAATTTCTGAGATA
*
7139826 TTACAGTAGTAATTTTTGAGATA
1 TTACAGTAGTAATTTCTGAGATA
7139849 TTACA
1 TTACA
7139854 ATAGGTGATC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (23 bp):
TTACAGTAGTAATTTCTGAGATA
Found at i:7148880 original size:20 final size:20
Alignment explanation
Indices: 7148843--7148883 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
7148833 GTGGCTGACA
* *
7148843 GTGGTTGATGAATAGCAATG
1 GTGGTCGATGAACAGCAATG
*
7148863 GTGGTCGATGAACGGCAATG
1 GTGGTCGATGAACAGCAATG
7148883 G
1 G
7148884 CGAAAGGTCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.27, C:0.10, G:0.39, T:0.24
Consensus pattern (20 bp):
GTGGTCGATGAACAGCAATG
Found at i:7150837 original size:90 final size:89
Alignment explanation
Indices: 7150711--7151030 Score: 498
Period size: 90 Copynumber: 3.6 Consensus size: 89
7150701 TCAAAATAAT
* * * *
7150711 TGTATT-ATTTCTTTAGAATGTTTGTATTTTTATATATTTATAAATTCAATGTAGTTGTTTAGGA
1 TGTATTAATTTC-TTAGAATGTTTGTATTTTTTTATATTT-TAAATTTAATATAGTTGTTTGGGA
*
7150775 TTTAAGGTATCATTTTTATATTTTCG
64 TTTAAGGTTTCATTTTTATATTTTCG
*
7150801 TGTATTAATTTCTTAGAATGTTTGTATTTTTTTATATCTGTAAATTTAATATAGTTGTTTGGGAT
1 TGTATTAATTTCTTAGAATGTTTGTATTTTTTTATAT-TTTAAATTTAATATAGTTGTTTGGGAT
7150866 TTAAGGTTTCATTTTTATATTTTCG
65 TTAAGGTTTCATTTTTATATTTTCG
7150891 TGTATTAATTTCTTAGAATGTTTGTATTTTTTTATATCTTTAAATTTAATATAGTTGTTTGGGAT
1 TGTATTAATTTCTTAGAATGTTTGTATTTTTTTATAT-TTTAAATTTAATATAGTTGTTTGGGAT
*
7150956 TTAAGGTTTCATTTTTATATTTTTG
65 TTAAGGTTTCATTTTTATATTTTCG
* * *
7150981 TGCATTAATTTCTTAGAATGTTTGTATTTTTTTGTATCTGTAAATTTAAT
1 TGTATTAATTTCTTAGAATGTTTGTATTTTTTTATAT-TTTAAATTTAAT
7151031 TTAATTCGTA
Statistics
Matches: 217, Mismatches: 11, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
90 211 0.97
91 6 0.03
ACGTcount: A:0.25, C:0.04, G:0.13, T:0.57
Consensus pattern (89 bp):
TGTATTAATTTCTTAGAATGTTTGTATTTTTTTATATTTTAAATTTAATATAGTTGTTTGGGATT
TAAGGTTTCATTTTTATATTTTCG
Found at i:7151095 original size:180 final size:178
Alignment explanation
Indices: 7150711--7151207 Score: 498
Period size: 180 Copynumber: 2.8 Consensus size: 178
7150701 TCAAAATAAT
* * *
7150711 TGTATT-ATTTCTTTAGAATGTTTGTATTTTTATATATTTATAAATTCAATGTAGTTGTTTAGGA
1 TGTATTAATTTC-TTACAATGTTTGTATTTTTATATATTT-TAAATTTAATATAGTTGTTT-GGA
* * *
7150775 TTTAAGGTATCATTTTTATATTTTCGTGTATTAATTTCTTAGAATGTTTGTATTTTTTTATATCT
63 TTTAAGGTTTCATTTTTATATTTTTGTGTATTAATTTCTTAGAATGTTTGTATTTTTTTGTATCT
* * * * * * *
7150840 GTAAATTTAATATAGTTGTTTGGGATTTAAGGTTTCATTTTTATATTTTCG
128 GTAAATTTAATTTAATTGTTTGAGATGTAAGGTTTCAATTTAAAATTTTCG
* *
7150891 TGTATTAATTTCTTAGAATGTTTGTATTTTTTTATATCTTTAAATTTAATATAGTTGTTTGGGAT
1 TGTATTAATTTCTTACAATGTTTGTATTTTTATATAT-TTTAAATTTAATATAGTTGTTT-GGAT
*
7150956 TTAAGGTTTCATTTTTATATTTTTGTGCATTAATTTCTTAGAATGTTTGTATTTTTTTGTATCTG
64 TTAAGGTTTCATTTTTATATTTTTGTGTATTAATTTCTTAGAATGTTTGTATTTTTTTGTATCTG
* *
7151021 TAAATTTAATTTAATTCGTATT-ATATGT-A-GTTTGAATTTAAAATTTTCG
129 TAAATTTAATTTAATT-GT-TTGAGATGTAAGGTTTCAATTTAAAATTTTCG
* * * *** *
7151070 TGTATTAATTT-TTCCCATTTGTTTGTAGTTTGT-T-GGGTTTAAATTTAATTTAGTGTGTATT-
1 TGTATTAATTTCTT-ACA-ATGTTTGTA-TTTTTATATATTTTAAATTTAATATAGT-TGT-TTG
** * * * * *
7151131 -ATTT-TTGTTTGAATTTTAT-TTTTT-TGTATTAATATT-GTAGAATGTTTGTATTTTATTGTG
61 GATTTAAGGTTTCATTTTTATATTTTTGTGTATTAAT-TTCTTAGAATGTTTGTATTTTTTTGTA
7151191 TCTGTAAATTTAATTTA
125 TCTGTAAATTTAATTTA
7151208 TCGTGTACTA
Statistics
Matches: 274, Mismatches: 33, Indels: 26
0.82 0.10 0.08
Matches are distributed among these distances:
174 46 0.17
175 7 0.03
176 11 0.04
177 4 0.01
178 18 0.07
179 31 0.11
180 139 0.51
181 16 0.06
182 2 0.01
ACGTcount: A:0.25, C:0.04, G:0.14, T:0.57
Consensus pattern (178 bp):
TGTATTAATTTCTTACAATGTTTGTATTTTTATATATTTTAAATTTAATATAGTTGTTTGGATTT
AAGGTTTCATTTTTATATTTTTGTGTATTAATTTCTTAGAATGTTTGTATTTTTTTGTATCTGTA
AATTTAATTTAATTGTTTGAGATGTAAGGTTTCAATTTAAAATTTTCG
Found at i:7151566 original size:29 final size:29
Alignment explanation
Indices: 7151533--7151591 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
7151523 TCGGGAGTTA
7151533 GTGGATATTGCGTCACCGGAGGTGCCGAT
1 GTGGATATTGCGTCACCGGAGGTGCCGAT
7151562 GTGGATATTGCGTCACCGGAGGTGCCGAT
1 GTGGATATTGCGTCACCGGAGGTGCCGAT
7151591 G
1 G
7151592 GAAAAATATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.17, C:0.20, G:0.39, T:0.24
Consensus pattern (29 bp):
GTGGATATTGCGTCACCGGAGGTGCCGAT
Found at i:7153906 original size:53 final size:49
Alignment explanation
Indices: 7153800--7153908 Score: 114
Period size: 53 Copynumber: 2.1 Consensus size: 49
7153790 TTCCTGTTTA
* ** *
7153800 TTTCATTTATATTTTTTTATATTTAAATTTAATTATTTCTCATTTTTAT
1 TTTCATTTATATTTTTTTACATTTAAATTTAATTATTTCTCATTTAAAC
7153849 TTTCATTTCAGTATTTGTTTT-CATTTAAATTTATAATTTATTT-TCATTTAAAC
1 TTTCATTT-A-TATTT-TTTTACATTTAAA-TT-TAA-TTATTTCTCATTTAAAC
7153902 TTTCATT
1 TTTCATT
7153909 CCATTTCATA
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
49 8 0.16
50 1 0.02
51 12 0.24
52 6 0.12
53 17 0.34
54 6 0.12
ACGTcount: A:0.27, C:0.08, G:0.02, T:0.63
Consensus pattern (49 bp):
TTTCATTTATATTTTTTTACATTTAAATTTAATTATTTCTCATTTAAAC
Found at i:7153955 original size:5 final size:5
Alignment explanation
Indices: 7153923--7154023 Score: 58
Period size: 5 Copynumber: 18.0 Consensus size: 5
7153913 TTCATAATCA
* * *
7153923 TCATT TTATT TTATAT TCATT TAACATT TCATT TAATT TCATAT TCATT
1 TCATT TCATT TCAT-T TCATT T--CATT TCATT TCATT TCAT-T TCATT
* *
7153972 ACAAATT ACATT TCATT TCATAT TCATATT TCATT TAGCATT TCATT TCATT
1 TC--ATT TCATT TCATT TCAT-T TC--ATT TCATT T--CATT TCATT TCATT
7154024 ATTATTTTTT
Statistics
Matches: 79, Mismatches: 6, Indels: 22
0.74 0.06 0.21
Matches are distributed among these distances:
5 47 0.59
6 12 0.15
7 18 0.23
8 2 0.03
ACGTcount: A:0.30, C:0.15, G:0.01, T:0.54
Consensus pattern (5 bp):
TCATT
Found at i:7153956 original size:28 final size:29
Alignment explanation
Indices: 7153923--7153998 Score: 93
Period size: 28 Copynumber: 2.7 Consensus size: 29
7153913 TTCATAATCA
* * *
7153923 TCATTTTATTTTATATTCATTTA-ACATT
1 TCATTTAATTTCATATTCATTTACAAATT
7153951 TCATTTAATTTCATATTCA-TTACAAATT
1 TCATTTAATTTCATATTCATTTACAAATT
* *
7153979 ACATTTCATTTCATATTCAT
1 TCATTTAATTTCATATTCAT
7153999 ATTTCATTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
27 3 0.07
28 38 0.93
ACGTcount: A:0.32, C:0.14, G:0.00, T:0.54
Consensus pattern (29 bp):
TCATTTAATTTCATATTCATTTACAAATT
Found at i:7154016 original size:30 final size:31
Alignment explanation
Indices: 7153928--7154039 Score: 90
Period size: 30 Copynumber: 3.6 Consensus size: 31
7153918 AATCATCATT
* *
7153928 TTATT-TTATATTCATTTAACATTTCATTTAA
1 TTATTATTAT-TTCATTTAGCATTTCATTTCA
* *
7153959 TT-TCATATTCATTACAAATTA-CATTTCATTTCA
1 TTAT--TATT-ATTTC-ATTTAGCATTTCATTTCA
7153992 -TATTCA-TATTTCATTTAGCATTTCATTTCA
1 TTATT-ATTATTTCATTTAGCATTTCATTTCA
*
7154022 TTATTATTTTTTCATTTA
1 TTATTATTATTTCATTTA
7154040 AATTTATTTT
Statistics
Matches: 65, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
29 4 0.06
30 18 0.28
31 18 0.28
32 3 0.05
33 16 0.25
34 6 0.09
ACGTcount: A:0.29, C:0.13, G:0.01, T:0.56
Consensus pattern (31 bp):
TTATTATTATTTCATTTAGCATTTCATTTCA
Found at i:7154405 original size:5 final size:5
Alignment explanation
Indices: 7154397--7154520 Score: 54
Period size: 6 Copynumber: 22.6 Consensus size: 5
7154387 CCTCTTTTTT
* *
7154397 TTTCA TTTCA TTTCTA TTTCTA TTTCTA TTTCTA TTTCAA TTACG TTT-A
1 TTTCA TTTCA TTTC-A TTTC-A TTTC-A TTTC-A TTTC-A TTTCA TTTCA
* * * *
7154446 TTTTGAA TTTCTA TTTCA TTT-A TTTGAA TTTCCA TTTCA TTCCA TTCCA
1 -TTT-CA TTTC-A TTTCA TTTCA TTT-CA TTT-CA TTTCA TTTCA TTTCA
*
7154495 TTTCCA TTTTTA TTTCTA TTTCA TTT
1 TTT-CA -TTTCA TTTC-A TTTCA TTT
7154521 AAATTTATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 20
0.75 0.09 0.16
Matches are distributed among these distances:
4 4 0.04
5 38 0.39
6 51 0.53
7 4 0.04
ACGTcount: A:0.20, C:0.17, G:0.02, T:0.60
Consensus pattern (5 bp):
TTTCA
Found at i:7154417 original size:6 final size:6
Alignment explanation
Indices: 7154397--7154434 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
7154387 CCTCTTTTTT
7154397 TTTC-A TTTC-A TTTCTA TTTCTA TTTCTA TTTCTA TTTC
1 TTTCTA TTTCTA TTTCTA TTTCTA TTTCTA TTTCTA TTTC
7154435 AATTACGTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 9 0.28
6 23 0.72
ACGTcount: A:0.16, C:0.18, G:0.00, T:0.66
Consensus pattern (6 bp):
TTTCTA
Done.