Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 21 of 240
Found at i:7528588 original size:22 final size:22
Alignment explanation
Indices: 7528539--7528589 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
7528529 AATTCATTGT
*
7528539 ATATTGTAGGAATATTCTGTAA
1 ATATTTTAGGAATATTCTGTAA
* *
7528561 ATATTTTAGGAATATTTTGTAG
1 ATATTTTAGGAATATTCTGTAA
7528583 ATATTTT
1 ATATTTT
7528590 TTTTATTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
ATATTTTAGGAATATTCTGTAA
Found at i:7533174 original size:22 final size:22
Alignment explanation
Indices: 7533146--7533190 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
7533136 AGGGGGAGTG
7533146 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
7533168 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
7533190 T
1 T
7533191 TTTATTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:7540840 original size:20 final size:20
Alignment explanation
Indices: 7540807--7540844 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7540797 ACTAGTTTTA
7540807 AGTAAAAATATAATAAAAGT
1 AGTAAAAATATAATAAAAGT
7540827 AGTAGAAAAT-TAATAAAA
1 AGTA-AAAATATAATAAAA
7540845 TCACAGACTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.66, C:0.00, G:0.11, T:0.24
Consensus pattern (20 bp):
AGTAAAAATATAATAAAAGT
Found at i:7560992 original size:12 final size:12
Alignment explanation
Indices: 7560975--7561000 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7560965 TACCGGTATC
7560975 GGTGCTGGAGTT
1 GGTGCTGGAGTT
7560987 GGTGCTGGAGTT
1 GGTGCTGGAGTT
7560999 GG
1 GG
7561001 GATTGTTGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.54, T:0.31
Consensus pattern (12 bp):
GGTGCTGGAGTT
Found at i:7571737 original size:25 final size:25
Alignment explanation
Indices: 7571709--7571778 Score: 77
Period size: 25 Copynumber: 2.7 Consensus size: 25
7571699 AACTTTCATT
* * *
7571709 ATATATATTTTTAGATTTTTTTAAA
1 ATATAAATTTTAAGATTTTTATAAA
7571734 ATATAAATTTTAAGATTTTTATAAA
1 ATATAAATTTTAAGATTTTTATAAA
* *
7571759 TATTTAGAATTTTAAAATTT
1 -ATATA-AATTTTAAGATTT
7571779 ATTTTGAATT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
25 22 0.58
26 4 0.11
27 12 0.32
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.54
Consensus pattern (25 bp):
ATATAAATTTTAAGATTTTTATAAA
Found at i:7571770 original size:19 final size:18
Alignment explanation
Indices: 7571735--7571778 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
7571725 TTTTTTAAAA
7571735 TATAAATTTTAAGATTTT
1 TATAAATTTTAAGATTTT
*
7571753 TATAAATATTT-AGAATTT
1 TATAAAT-TTTAAGATTTT
7571771 TA-AAATTT
1 TATAAATTT
7571779 ATTTTGAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 2 0.08
17 4 0.17
18 15 0.62
19 3 0.12
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (18 bp):
TATAAATTTTAAGATTTT
Found at i:7579329 original size:19 final size:19
Alignment explanation
Indices: 7579307--7579355 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
7579297 TATATTAGTT
** *
7579307 AAAAATTTTGTTAAATTTG
1 AAAAATTTTAATAAATCTG
*
7579326 AAAATTTTTAATAAATCTG
1 AAAAATTTTAATAAATCTG
7579345 AAAATATTTTA
1 AAAA-ATTTTA
7579356 TTCACTCACA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
19 19 0.79
20 5 0.21
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (19 bp):
AAAAATTTTAATAAATCTG
Found at i:7593650 original size:14 final size:14
Alignment explanation
Indices: 7593631--7593665 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
7593621 TATTTATTTC
**
7593631 TTAATTAATTTAAA
1 TTAATTAATAAAAA
7593645 TTAATTAATAAAAA
1 TTAATTAATAAAAA
7593659 TTAATTA
1 TTAATTA
7593666 TGACACAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
TTAATTAATAAAAA
Found at i:7596274 original size:21 final size:21
Alignment explanation
Indices: 7596250--7596293 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
7596240 GAATTTTTAG
*
7596250 TATTTATTGTATCATTT-TATT
1 TATTTAAT-TATCATTTCTATT
*
7596271 TATTTAATTATCTTTTCTATT
1 TATTTAATTATCATTTCTATT
7596292 TA
1 TA
7596294 ATTAGATCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.25, C:0.07, G:0.02, T:0.66
Consensus pattern (21 bp):
TATTTAATTATCATTTCTATT
Found at i:7600670 original size:18 final size:18
Alignment explanation
Indices: 7600644--7600682 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
7600634 ATTATATAGA
*
7600644 TTTATTTATAATTCTAAT
1 TTTAGTTATAATTCTAAT
* *
7600662 TTTAGTTATATTTTTAAT
1 TTTAGTTATAATTCTAAT
7600680 TTT
1 TTT
7600683 TTAAAATAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (18 bp):
TTTAGTTATAATTCTAAT
Found at i:7603368 original size:3 final size:3
Alignment explanation
Indices: 7603353--7603392 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
7603343 CTTAAGCAAG
*
7603353 TAT TAT TAA TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
7603393 CCCCAGTAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:7604966 original size:16 final size:16
Alignment explanation
Indices: 7604943--7604980 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
7604933 TAAAATATAT
7604943 TCAATTTATTTTTTAA
1 TCAATTTATTTTTTAA
*
7604959 TTAATTTATTTTTTAA
1 TCAATTTATTTTTTAA
7604975 TCAATT
1 TCAATT
7604981 CGACTTATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (16 bp):
TCAATTTATTTTTTAA
Found at i:7606623 original size:5 final size:5
Alignment explanation
Indices: 7606613--7606663 Score: 102
Period size: 5 Copynumber: 10.2 Consensus size: 5
7606603 TAAGTATATA
7606613 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
7606663 A
1 A
7606664 AGTAAATGAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 46 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:7607637 original size:40 final size:38
Alignment explanation
Indices: 7607593--7607716 Score: 108
Period size: 40 Copynumber: 3.2 Consensus size: 38
7607583 AACTTCGATT
*
7607593 CGATGAGACACTGGTGTCAATTTATTACTTCGGATTAATT
1 CGATGAGACACTGGTGTCAA-TTATTACTTCGGATT-ATC
* * * * *
7607633 CGATGAGGCACGGGGTGCCAA-T-TTACTTCGGTTTAGC
1 CGATGAGACAC-TGGTGTCAATTATTACTTCGGATTATC
* * *
7607670 CGATGAGACACTGGGTGTCACCTTATTGCTTCGAATTATC
1 CGATGAGACACT-GGTGTCA-ATTATTACTTCGGATTATC
7607710 CGATGAG
1 CGATGAG
7607717 GTATTGGGTA
Statistics
Matches: 65, Mismatches: 14, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
37 17 0.26
38 11 0.17
39 2 0.03
40 28 0.43
41 7 0.11
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.31
Consensus pattern (38 bp):
CGATGAGACACTGGTGTCAATTATTACTTCGGATTATC
Found at i:7607686 original size:37 final size:40
Alignment explanation
Indices: 7607593--7607686 Score: 97
Period size: 37 Copynumber: 2.4 Consensus size: 40
7607583 AACTTCGATT
* **
7607593 CGATGAGACACT-GGTGTCAATTTATTACTTCGGATTAATT
1 CGATGAGACACTGGGTGCCAA-TTATTACTTCGGATTAAGC
* * *
7607633 CGATGAGGCACGGGGTGCCAA-T-TTACTTCGG-TTTAGC
1 CGATGAGACACTGGGTGCCAATTATTACTTCGGATTAAGC
7607670 CGATGAGACACTGGGTG
1 CGATGAGACACTGGGTG
7607687 TCACCTTATT
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
37 18 0.40
38 9 0.20
39 1 0.02
40 10 0.22
41 7 0.16
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (40 bp):
CGATGAGACACTGGGTGCCAATTATTACTTCGGATTAAGC
Found at i:7608903 original size:19 final size:18
Alignment explanation
Indices: 7608862--7608897 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
7608852 TTTAAAATTT
7608862 TTATTTTTATCATTATTA
1 TTATTTTTATCATTATTA
*
7608880 TTATTATTTATTATTATT
1 TTATT-TTTATCATTATT
7608898 GATATTGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (18 bp):
TTATTTTTATCATTATTA
Found at i:7612067 original size:38 final size:38
Alignment explanation
Indices: 7612025--7612098 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
7612015 ACATTGATTC
*
7612025 CATATCCCAGATATAGTCTTACACAGTAGCACATATGT
1 CATATCCCAGATATAGTCTTACACAATAGCACATATGT
*
7612063 CATATCCCAGATATGGTCTTACACAATAGCACATAT
1 CATATCCCAGATATAGTCTTACACAATAGCACATAT
7612099 CACACCAATG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.35, C:0.24, G:0.12, T:0.28
Consensus pattern (38 bp):
CATATCCCAGATATAGTCTTACACAATAGCACATATGT
Found at i:7614034 original size:18 final size:17
Alignment explanation
Indices: 7614008--7614049 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
7613998 CAATTTATTT
7614008 TATTTTTTATATATAAA
1 TATTTTTTATATATAAA
* *
7614025 TATTTGTTTATATTTATA
1 TATTT-TTTATATATAAA
7614043 TATTTTT
1 TATTTTT
7614050 GTTCGCTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (17 bp):
TATTTTTTATATATAAA
Found at i:7614165 original size:19 final size:19
Alignment explanation
Indices: 7614126--7614161 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7614116 AAAGGGGAAG
*
7614126 AAGAAAAGGAAAATAAATA
1 AAGAAAAAGAAAATAAATA
7614145 AAGAAAAAGAAAA-AAAT
1 AAGAAAAAGAAAATAAAT
7614162 TAAATTGGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.78, C:0.00, G:0.14, T:0.08
Consensus pattern (19 bp):
AAGAAAAAGAAAATAAATA
Found at i:7617683 original size:284 final size:282
Alignment explanation
Indices: 7617147--7617832 Score: 1078
Period size: 284 Copynumber: 2.4 Consensus size: 282
7617137 AGATGATTTT
* * * **
7617147 GGATAAGTTCTGAAGTTTATTCTGAATTTGAGCTTGAGGACAAACTTAACTCTAAGAAGGGGAGT
1 GGATAAGTTTTGAAGTTTATTCTGAATTTGAGCTTGAGGACAAGCTCAACTCCGAGAAGGGGAGT
*
7617212 AATGATATGGATGCTTTTATTGCAATAGGAGTTTTTAG---T-TTTATTTATTTATTATATCAGG
66 AATGATATGGACGCTTTTATTGCAATAGGAGTTTTTAGTTTTATTTATTTATTTATTATATCAGG
7617273 TTTTATTAAGAGTTTGTTTTACTTATTTTCTCTATTATATTAGGTTTTTGTTTCCTTCATAAACT
131 TTTTATTAAGAGTTTGTTTTACTTATTTTCTCTATTATATTAGGTTTTTGTTTCCTTCATAAACT
*
7617338 CTAAGTTAGAAATTCTATTTTATGTCAATTAGGACTCTTTCCATTGTTATTAATAGTCTATAAAA
196 CTAAGTTAGAAATTCTATTTTATGTCAATTAGGACTCTTTCCATTGTTATTAACAGTCTATAAAA
*
7617403 GGCTGCCAATATGAATTAAAGG-
261 GGCTACCAATATGAATT-AAGGA
* * *
7617425 GGATAAGTTTTGAAGTTTATCCTGAATTTGAGCTTGAAGACAAGCTCAACTCCGAGAAGGGGAAT
1 GGATAAGTTTTGAAGTTTATTCTGAATTTGAGCTTGAGGACAAGCTCAACTCCGAGAAGGGGAGT
*
7617490 AATGATATGGACGCTTTTATTGCAATAGGTGTTTTTAGTTTTATTTATTTATTTATTATATCAGG
66 AATGATATGGACGCTTTTATTGCAATAGGAGTTTTTAGTTTTATTTATTTATTTATTATATCAGG
* *
7617555 TTTTATTAAGAGTTTTAGTTTTACTTGTTTTCTTTATTATATTAGGTTTTTGTTTCCTTCATAAA
131 TTTTATTAAGAG-TTT-GTTTTACTTATTTTCTCTATTATATTAGGTTTTTGTTTCCTTCATAAA
* * * * *
7617620 CTCTAAGTTAGGAATTCTATTTTATTTTAATTAGGACTCTTTCCTTTGTTATTAACGGTCTATAA
194 CTCTAAGTTAGAAATTCTATTTTATGTCAATTAGGACTCTTTCCATTGTTATTAACAGTCTATAA
7617685 AAGGCTACCAATATGAATTAAGGA
259 AAGGCTACCAATATGAATTAAGGA
*
7617709 GGATAAATTCTT-AAGTTTATTCTGAATTTGAGCTTGAGGACAAGCTCAACTCCGAGAAGGGGAG
1 GGATAAGTT-TTGAAGTTTATTCTGAATTTGAGCTTGAGGACAAGCTCAACTCCGAGAAGGGGAG
* * *
7617773 CAATGATATGAACGCTTTTGTTGCAATAGGAGTTTTTAGTTTTATTTATTTATTATATTA
65 TAATGATATGGACGCTTTTATTGCAATAGGAGTTTTTAGTTTTATTTATTTATT-TATTA
7617833 GGTTTTTGTT
Statistics
Matches: 372, Mismatches: 27, Indels: 11
0.91 0.07 0.03
Matches are distributed among these distances:
278 93 0.25
281 1 0.00
282 34 0.09
283 7 0.02
284 230 0.62
285 7 0.02
ACGTcount: A:0.29, C:0.10, G:0.18, T:0.43
Consensus pattern (282 bp):
GGATAAGTTTTGAAGTTTATTCTGAATTTGAGCTTGAGGACAAGCTCAACTCCGAGAAGGGGAGT
AATGATATGGACGCTTTTATTGCAATAGGAGTTTTTAGTTTTATTTATTTATTTATTATATCAGG
TTTTATTAAGAGTTTGTTTTACTTATTTTCTCTATTATATTAGGTTTTTGTTTCCTTCATAAACT
CTAAGTTAGAAATTCTATTTTATGTCAATTAGGACTCTTTCCATTGTTATTAACAGTCTATAAAA
GGCTACCAATATGAATTAAGGA
Found at i:7623348 original size:21 final size:21
Alignment explanation
Indices: 7623306--7623351 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
7623296 AACATACTTA
* * * *
7623306 ATTTTAATTAAATTTAATTAT
1 ATTTTAATAAAAATAAAATAT
7623327 ATTTTAATAAAAATAAAATAT
1 ATTTTAATAAAAATAAAATAT
7623348 ATTT
1 ATTT
7623352 AATTTTATAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTTTAATAAAAATAAAATAT
Found at i:7627384 original size:61 final size:61
Alignment explanation
Indices: 7627318--7627505 Score: 208
Period size: 61 Copynumber: 3.1 Consensus size: 61
7627308 TTATAGTATC
7627318 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
* * * * * * * * * *
7627379 ATATATTTTAATTAT-AATATATTTA-ATAATAAT-TATG-TTAATTTA-TATTTTA-TAGTATC
1 ATATATTATGATT-TGAGTAAATTCATATAAGAATAT-TGATT-ATTAAGAATTTTATTA-AATT
7627438 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
7627499 ATATATT
1 ATATATT
7627506 TTAATTATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 20
0.71 0.15 0.15
Matches are distributed among these distances:
58 3 0.03
59 29 0.30
60 26 0.27
61 36 0.37
62 3 0.03
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
Found at i:7627405 original size:15 final size:15
Alignment explanation
Indices: 7627370--7627421 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
7627360 TTAAGAATTT
*
7627370 TATTAAATTAT-ATA
1 TATTTAATTATAATA
7627384 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
7627398 TATTTAATAATAAT-
1 TATTTAATTATAATA
7627412 TATGTTAATT
1 TAT-TTAATT
7627422 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:7627455 original size:120 final size:121
Alignment explanation
Indices: 7627280--7627542 Score: 476
Period size: 120 Copynumber: 2.2 Consensus size: 121
7627270 ACATGTTAAT
* *
7627280 TTTAATATTAATTAT-TTCAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCAT
1 TTTAATAATAATTATGTTCAAATTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCAT
7627344 ATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
66 ATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
*
7627400 TTTAATAATAATTATGTT-AATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCAT
1 TTTAATAATAATTATGTTCAAATTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCAT
7627464 ATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
66 ATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
*
7627520 TTTAATAATAATTATGTTTAAAT
1 TTTAATAATAATTATGTTCAAAT
7627543 ATGATTAAAT
Statistics
Matches: 137, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
120 132 0.96
121 5 0.04
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.50
Consensus pattern (121 bp):
TTTAATAATAATTATGTTCAAATTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCAT
ATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
Found at i:7627520 original size:16 final size:16
Alignment explanation
Indices: 7627499--7627540 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
7627489 TTATTAAATT
*
7627499 ATATATTTTAATTATA
1 ATATATTTTAATAATA
7627515 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
7627530 AT-TATGTTTAA
1 ATATAT-TTTAA
7627541 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:7627525 original size:15 final size:15
Alignment explanation
Indices: 7627490--7627531 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
7627480 TTAAGAATTT
*
7627490 TATTAAATTAT-ATA
1 TATTTAATTATAATA
7627504 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
7627518 TATTTAATAATAAT
1 TATTTAATTATAAT
7627532 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:7634381 original size:6 final size:6
Alignment explanation
Indices: 7634372--7634399 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
7634362 TATTATTATT
7634372 ATTAGC ATTAGC ATTAGC ATTAGC ATTA
1 ATTAGC ATTAGC ATTAGC ATTAGC ATTA
7634400 CTACAACATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (6 bp):
ATTAGC
Found at i:7641662 original size:13 final size:13
Alignment explanation
Indices: 7641644--7641668 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7641634 GGTACCACAA
7641644 TTATATCATCAAT
1 TTATATCATCAAT
7641657 TTATATCATCAA
1 TTATATCATCAA
7641669 AATATCATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (13 bp):
TTATATCATCAAT
Found at i:7654631 original size:45 final size:42
Alignment explanation
Indices: 7654545--7654629 Score: 136
Period size: 42 Copynumber: 2.0 Consensus size: 42
7654535 AATTAATCCG
* *
7654545 CAATCATCCTCTACTTATCAACAGCCTGCACAATATCCTCCT
1 CAATCATCATCTACTTATCAACAACCTGCACAATATCCTCCT
7654587 CAATCATCATCCT-CTTATCAACAACCTGCACAATATCCTCCT
1 CAATCATCAT-CTACTTATCAACAACCTGCACAATATCCTCCT
7654629 C
1 C
7654630 CTGAAAGTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
42 38 0.95
43 2 0.05
ACGTcount: A:0.29, C:0.39, G:0.04, T:0.28
Consensus pattern (42 bp):
CAATCATCATCTACTTATCAACAACCTGCACAATATCCTCCT
Found at i:7667155 original size:18 final size:18
Alignment explanation
Indices: 7667132--7667166 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7667122 TAAATGTGGT
7667132 CCCCTTATTGGATGGGGA
1 CCCCTTATTGGATGGGGA
*
7667150 CCCCTTATTGGGTGGGG
1 CCCCTTATTGGATGGGG
7667167 CTACATTTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.23, G:0.37, T:0.29
Consensus pattern (18 bp):
CCCCTTATTGGATGGGGA
Found at i:7675678 original size:42 final size:42
Alignment explanation
Indices: 7675619--7675703 Score: 125
Period size: 42 Copynumber: 2.0 Consensus size: 42
7675609 AAGTAACCCG
* * * *
7675619 CAATCATCCTCCACTTATCAGCAGCCTTCACAATATCCTCCT
1 CAATCATCCTCCACTTATCAACAACCTGCACAATATACTCCT
*
7675661 CAATCATCCTCCTCTTATCAACAACCTGCACAATATACTCCT
1 CAATCATCCTCCACTTATCAACAACCTGCACAATATACTCCT
7675703 C
1 C
7675704 CTGAAAGTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.28, C:0.40, G:0.04, T:0.28
Consensus pattern (42 bp):
CAATCATCCTCCACTTATCAACAACCTGCACAATATACTCCT
Found at i:7675940 original size:126 final size:126
Alignment explanation
Indices: 7675709--7675966 Score: 419
Period size: 126 Copynumber: 2.0 Consensus size: 126
7675699 TCCTCCTGAA
* * *
7675709 AGTAATTCTGAGCTCCTCTCCACACACATTAGCTTCTCTGGTCATAACCGGCAAGACAGTACAAG
1 AGTAATTCCGAGCTCCTCTCCACACACAATAGCTTCTCTGGTCATAACAGGCAAGACAGTACAAG
* * * *
7675774 TTCCTTAGCAGCAAATACGGGAAGTGCTTCACCTCTTTACCCGCATTTGGATCATCAGTTG
66 TTCCTTAGCAGCAAATACGGGAAGTGCCTCACCTCTTTACCCACATTTAGATCATCAATTG
7675835 AGTAATTCCGAGCTCCTCTCCACACACAATAGCTTCTCTGGTCATAACAGGCAAGACAGTACAAG
1 AGTAATTCCGAGCTCCTCTCCACACACAATAGCTTCTCTGGTCATAACAGGCAAGACAGTACAAG
* *
7675900 TTCCTTAGCAGCAAATTCGGGAAGTGCCTCACCTGC-TTACCCACTTTTAGATCATCAATTG
66 TTCCTTAGCAGCAAATACGGGAAGTGCCTCACCT-CTTTACCCACATTTAGATCATCAATTG
7675961 AGTAAT
1 AGTAAT
7675967 ATGCATTTGT
Statistics
Matches: 122, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
126 121 0.99
127 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (126 bp):
AGTAATTCCGAGCTCCTCTCCACACACAATAGCTTCTCTGGTCATAACAGGCAAGACAGTACAAG
TTCCTTAGCAGCAAATACGGGAAGTGCCTCACCTCTTTACCCACATTTAGATCATCAATTG
Found at i:7691076 original size:18 final size:19
Alignment explanation
Indices: 7691053--7691096 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
7691043 CACAATACTT
* *
7691053 TATATTATGTTATTT-TTA
1 TATATTATGTAATTTATAA
7691071 TATATTATGTAATTTATAA
1 TATATTATGTAATTTATAA
7691090 TATATTA
1 TATATTA
7691097 AAATATATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 14 0.61
19 9 0.39
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (19 bp):
TATATTATGTAATTTATAA
Found at i:7698662 original size:161 final size:162
Alignment explanation
Indices: 7698455--7698772 Score: 548
Period size: 161 Copynumber: 2.0 Consensus size: 162
7698445 CAAGCAGTCA
* * * *
7698455 CATAAACATTTGCTTTCATACACATAAAAAAATTATTATTGGCATCCCATACTAATGAAACTGAC
1 CATAAAAATTTGCATTCATACACA-AAAAAAATCATTATCGGCATCCCATACTAATGAAACTGAC
*
7698520 ACGTAATAATTAAGTAGTAAAGACATAATCGAAAAATCTAATGGTTGAAACAATCAAAAGCTAAT
65 ACGTAATAATTAAGTACTAAAGACATAATCGAAAAATCTAATGGTTGAAACAATCAAAAGCTAAT
*
7698585 GTCTTGCATATATGTAGTTAAAATTATTATCAG
130 GTCTTGCATATATGCAGTTAAAATTATTATCAG
7698618 CATAAAAATTTGCATTCATACAC-AAAAAAATCATTATCGGCATCCCATACTAATGAAACTGACA
1 CATAAAAATTTGCATTCATACACAAAAAAAATCATTATCGGCATCCCATACTAATGAAACTGACA
*
7698682 CGTAATAATTAAGTACTAAAGACATAATCGATAAATCTAATGGTTGAAACAATCAAAAGCTAATG
66 CGTAATAATTAAGTACTAAAGACATAATCGAAAAATCTAATGGTTGAAACAATCAAAAGCTAATG
*
7698747 TCTTGCATTTATGCAGTTAAAATTAT
131 TCTTGCATATATGCAGTTAAAATTAT
7698773 AGGAAAACAA
Statistics
Matches: 147, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
161 126 0.86
163 21 0.14
ACGTcount: A:0.44, C:0.15, G:0.11, T:0.30
Consensus pattern (162 bp):
CATAAAAATTTGCATTCATACACAAAAAAAATCATTATCGGCATCCCATACTAATGAAACTGACA
CGTAATAATTAAGTACTAAAGACATAATCGAAAAATCTAATGGTTGAAACAATCAAAAGCTAATG
TCTTGCATATATGCAGTTAAAATTATTATCAG
Found at i:7700840 original size:9 final size:9
Alignment explanation
Indices: 7700795--7700854 Score: 66
Period size: 9 Copynumber: 6.2 Consensus size: 9
7700785 TTTTAAGCAA
7700795 TTTCATTTTT
1 TTTC-TTTTT
7700805 TTTCTTTTAT
1 TTTCTTTT-T
* *
7700815 GTTCTTTTAAC
1 TTTCTTTT--T
7700826 TTTCTTTTT
1 TTTCTTTTT
7700835 TTTCTTTTT
1 TTTCTTTTT
7700844 TTTCTTTTT
1 TTTCTTTTT
7700853 TT
1 TT
7700855 CATTCTCTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
9 24 0.55
10 12 0.27
11 8 0.18
ACGTcount: A:0.07, C:0.12, G:0.02, T:0.80
Consensus pattern (9 bp):
TTTCTTTTT
Found at i:7700845 original size:10 final size:10
Alignment explanation
Indices: 7700795--7700854 Score: 52
Period size: 10 Copynumber: 6.1 Consensus size: 10
7700785 TTTTAAGCAA
*
7700795 TTTCATTTTT
1 TTTCTTTTTT
*
7700805 TTTCTTTTAT
1 TTTCTTTTTT
* **
7700815 GTTCTTTTAAC
1 TTTCTTTT-TT
7700826 TTTC-TTTTT
1 TTTCTTTTTT
7700835 TTTC-TTTTT
1 TTTCTTTTTT
7700844 TTTCTTTTTT
1 TTTCTTTTTT
7700854 T
1 T
7700855 CATTCTCTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
9 13 0.32
10 24 0.59
11 4 0.10
ACGTcount: A:0.07, C:0.12, G:0.02, T:0.80
Consensus pattern (10 bp):
TTTCTTTTTT
Found at i:7708214 original size:33 final size:33
Alignment explanation
Indices: 7708170--7708394 Score: 158
Period size: 33 Copynumber: 6.5 Consensus size: 33
7708160 ATTGGTGGAT
7708170 TCAGCACTTAGCAACCACCAATGAGTCGGGGAA
1 TCAGCACTTAGCAACCACCAATGAGTCGGGGAA
* *
7708203 TAAGCACTTAGCAACTC-CTTTCACATTTAAGATACGGTGGAA
1 TCAGCACTTAGCAAC-CAC---CA-A--TGAG-T-CGG-GGAA
* * *
7708245 TCAGCACGTAGCAACCACCAATGATTCGGGAAA
1 TCAGCACTTAGCAACCACCAATGAGTCGGGGAA
*
7708278 TCAGCACTTAGCAACC-CC--T---TGGGGGAA
1 TCAGCACTTAGCAACCACCAATGAGTCGGGGAA
* *
7708305 TCAGCACTTAGCAACCCCTTCACATTTAAGATACGGTGGAA
1 TCAGCACTTAGCAACCAC--CA-A--TGAG-T-CGG-GGAA
*
7708346 TCAGCACTTAGCAACCACCAATGAGTCGGAGAA
1 TCAGCACTTAGCAACCACCAATGAGTCGGGGAA
7708379 TCAGCACTTAGCAACC
1 TCAGCACTTAGCAACC
7708395 CCTTTTTACA
Statistics
Matches: 153, Mismatches: 14, Indels: 50
0.71 0.06 0.23
Matches are distributed among these distances:
27 22 0.14
28 1 0.01
30 2 0.01
32 2 0.01
33 52 0.34
34 7 0.05
35 3 0.02
36 7 0.05
37 1 0.01
38 2 0.01
39 8 0.05
40 3 0.02
41 25 0.16
42 18 0.12
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (33 bp):
TCAGCACTTAGCAACCACCAATGAGTCGGGGAA
Found at i:7708352 original size:101 final size:102
Alignment explanation
Indices: 7708197--7708398 Score: 345
Period size: 101 Copynumber: 2.0 Consensus size: 102
7708187 CCAATGAGTC
*
7708197 GGGGAATAAGCACTTAGCAACTCCTTTCACATTTAAGATACGGTGGAATCAGCACGTAGCAACCA
1 GGGGAATAAGCACTTAGCAACTCCCTTCACATTTAAGATACGGTGGAATCAGCACGTAGCAACCA
*
7708262 CCAATGATTCGG-GAAATCAGCACTTAGCAACCCCTTG
66 CCAATGAGTCGGAG-AATCAGCACTTAGCAACCCCTTG
* *
7708299 GGGGAATCAGCACTTAGCAAC-CCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATAAGCACTTAGCAACTCCCTTCACATTTAAGATACGGTGGAATCAGCACGTAGCAACCA
7708363 CCAATGAGTCGGAGAATCAGCACTTAGCAACCCCTT
66 CCAATGAGTCGGAGAATCAGCACTTAGCAACCCCTT
7708399 TTTACATTTA
Statistics
Matches: 95, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
101 74 0.78
102 21 0.22
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (102 bp):
GGGGAATAAGCACTTAGCAACTCCCTTCACATTTAAGATACGGTGGAATCAGCACGTAGCAACCA
CCAATGAGTCGGAGAATCAGCACTTAGCAACCCCTTG
Found at i:7708393 original size:74 final size:69
Alignment explanation
Indices: 7708276--7708434 Score: 221
Period size: 76 Copynumber: 2.2 Consensus size: 69
7708266 TGATTCGGGA
*
7708276 AATCAGCACTTAGCAACCCCTTGGGGGAATCAGCACTTAGCAACCCC-TTCACATTTAAGATACG
1 AATCAGCACTTAGCAACCCCATGGGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACG
*
7708340 GTGG
66 ATGG
*
7708344 AATCAGCACTTAGCAACCACCAATGAGTCGGAGAATCAGCACTTAGCAACCCCTTTTTACATTTA
1 AATCAGCACTTAGCAACC-CC-ATG-G--GG-GAATCAGCACTTAGCAACCCC-TTTCACATTTA
7708409 AGATACGATGG
59 AGATACGATGG
7708420 AATCAGCACTTAGCA
1 AATCAGCACTTAGCA
7708435 TGTAATGGCC
Statistics
Matches: 80, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
68 18 0.22
69 2 0.03
70 2 0.03
71 1 0.01
73 2 0.03
74 21 0.26
76 34 0.43
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (69 bp):
AATCAGCACTTAGCAACCCCATGGGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACG
ATGG
Found at i:7712276 original size:37 final size:37
Alignment explanation
Indices: 7712226--7712304 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
7712216 TTATTACGAA
* * *
7712226 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
7712263 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
7712300 GTCTT
1 GTCTT
7712305 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:7712597 original size:49 final size:47
Alignment explanation
Indices: 7712423--7712959 Score: 609
Period size: 47 Copynumber: 10.9 Consensus size: 47
7712413 CCCTTCGGGA
* * * * * *
7712423 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
7712470 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7712517 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7712564 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
7712613 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7712662 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7712709 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
7712758 CTTATCACATATATACACTTTCACATTCATCACTTTC-ACATTCATCACATCGGC
1 CTTATCACATATATACACTTTCACATTCATCAC-ATCGGC---CAT----TAGGC
* * * * **
7712812 CATTAGGC-C-T-TATCACATATATATACACTTTCAT-A-TTCATCACATTGGCCATTAGGC
1 C-TTA-TCACATATAT-ACA-CT-T-T-CACATTCATCACATCGGC-CA-T------TAGGC
7712869 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7712916 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
7712960 TGCCATACTA
Statistics
Matches: 432, Mismatches: 30, Indels: 56
0.83 0.06 0.11
Matches are distributed among these distances:
47 214 0.50
48 2 0.00
49 141 0.33
50 3 0.01
53 12 0.03
54 15 0.03
55 14 0.03
56 8 0.02
57 12 0.03
58 11 0.03
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:7712620 original size:96 final size:95
Alignment explanation
Indices: 7712423--7712790 Score: 605
Period size: 96 Copynumber: 3.9 Consensus size: 95
7712413 CCCTTCGGGA
* * * * * * * *
7712423 CTTATCAC-ATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
7712487 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
7712517 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATA
7712581 CACTTTCACATTCATCACATCGGCCATTAGGC
64 CACTTTCACATTCATCACATCGGCCATTAGGC
*
7712613 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
7712678 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
7712709 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
7712774 ACTTTCACATTCATCAC
65 ACTTTCACATTCATCAC
7712791 TTTCACATTC
Statistics
Matches: 260, Mismatches: 10, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
94 47 0.18
96 166 0.64
98 47 0.18
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (95 bp):
CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:7712793 original size:15 final size:15
Alignment explanation
Indices: 7712773--7712805 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
7712763 CACATATATA
7712773 CACTTTCACATTCAT
1 CACTTTCACATTCAT
7712788 CACTTTCACATTCAT
1 CACTTTCACATTCAT
7712803 CAC
1 CAC
7712806 ATCGGCCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.27, C:0.36, G:0.00, T:0.36
Consensus pattern (15 bp):
CACTTTCACATTCAT
Found at i:7712799 original size:62 final size:63
Alignment explanation
Indices: 7712726--7712854 Score: 233
Period size: 62 Copynumber: 2.0 Consensus size: 63
7712716 CATATATATA
7712726 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCAT
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCAT
*
7712788 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCATATTCAT
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCAT
7712852 CAC
1 CAC
7712855 ATTGGCCATT
Statistics
Matches: 64, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
62 40 0.62
64 24 0.38
ACGTcount: A:0.29, C:0.30, G:0.06, T:0.34
Consensus pattern (63 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCAT
Found at i:7712805 original size:111 final size:111
Alignment explanation
Indices: 7712677--7712901 Score: 432
Period size: 111 Copynumber: 2.0 Consensus size: 111
7712667 CACATATATA
7712677 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
7712742 ACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
66 ACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
*
7712788 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCATATTCATC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
*
7712853 ACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
66 ACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
7712899 CAC
1 CAC
7712902 ATCGGCCATT
Statistics
Matches: 112, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
111 112 1.00
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34
Consensus pattern (111 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
ACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
Found at i:7712828 original size:31 final size:31
Alignment explanation
Indices: 7712731--7712829 Score: 91
Period size: 31 Copynumber: 3.2 Consensus size: 31
7712721 ATATACACTT
7712731 TCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATTCATCACATCGGCCATTAGGCCTTA
* * *
7712762 TCACATAT-ATACACTTTC--ACATTCA-TCACTT-
1 TCACAT-TCAT-CAC-ATCGGCCATT-AGGC-CTTA
7712793 TCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATTCATCACATCGGCCATTAGGCCTTA
7712824 TCACAT
1 TCACAT
7712830 ATATATACAC
Statistics
Matches: 52, Mismatches: 6, Indels: 20
0.67 0.08 0.26
Matches are distributed among these distances:
29 2 0.04
30 8 0.15
31 32 0.62
32 8 0.15
33 2 0.04
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.32
Consensus pattern (31 bp):
TCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:7712834 original size:158 final size:157
Alignment explanation
Indices: 7712630--7712948 Score: 586
Period size: 158 Copynumber: 2.0 Consensus size: 157
7712620 CATATATATA
7712630 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCA
7712694 CATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
66 CATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
7712759 TTATCACATATATACACTTTCACATTCAT
129 TTATCACATATATACACTTTCACATTCAT
*
7712788 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCATATTCATC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATC
*
7712853 ACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
65 ACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
7712918 TATCACATATATACACTTTCACATTCAT
130 TATCACATATATACACTTTCACATTCAT
7712946 CAC
1 CAC
7712949 ATCGGCCATT
Statistics
Matches: 157, Mismatches: 2, Indels: 4
0.96 0.01 0.02
Matches are distributed among these distances:
158 112 0.71
160 45 0.29
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (157 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCA
CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
ATCACATATATACACTTTCACATTCAT
Found at i:7712901 original size:96 final size:94
Alignment explanation
Indices: 7712788--7712959 Score: 308
Period size: 96 Copynumber: 1.8 Consensus size: 94
7712778 TCACATTCAT
*
7712788 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCATATTCATC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATC
*
7712853 ACATTGGCCATTAGGCCTTATCACATATATA
64 ACATCGGCCATTAGGCCTTATCACATATATA
7712884 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
7712949 ATCGGCCATTA
66 ATCGGCCATTA
7712960 TGCCATACTA
Statistics
Matches: 74, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
94 34 0.46
96 40 0.54
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
ATCGGCCATTAGGCCTTATCACATATATA
Found at i:7716757 original size:74 final size:74
Alignment explanation
Indices: 7716621--7716760 Score: 217
Period size: 74 Copynumber: 1.9 Consensus size: 74
7716611 GGGAAACAAC
* * * * *
7716621 AAAATCTCACGAGAAAATATTATGACAATTAAAAAGGACAAAGATGACAAACTCCCATTAAAGCA
1 AAAATCCCACGAGAAAATATTATGACAATAAAAAAAGACAAAGATGACAAACTCCAAATAAAGCA
7716686 CGCAATGAT
66 CGCAATGAT
* *
7716695 AAAATCCCACGAGAAAATATTATGACAATAAAAAAAGACAAAGATGTCAATCTCCAAATAAAGCA
1 AAAATCCCACGAGAAAATATTATGACAATAAAAAAAGACAAAGATGACAAACTCCAAATAAAGCA
7716760 C
66 C
7716761 ACTCTCTGTT
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
74 59 1.00
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (74 bp):
AAAATCCCACGAGAAAATATTATGACAATAAAAAAAGACAAAGATGACAAACTCCAAATAAAGCA
CGCAATGAT
Found at i:7730677 original size:89 final size:90
Alignment explanation
Indices: 7730579--7730762 Score: 307
Period size: 90 Copynumber: 2.1 Consensus size: 90
7730569 CTATTTTCAT
* * *
7730579 ACTTTTTTTACAAAATTTATTAATAAAACAACTTTAAATT-AAGAAAAATATCCAAGTAAGGTTT
1 ACTTTTTTTACAAAAATTATTAAAAAAACAACTTTAAATTAAAGAAAAATATCAAAGTAAGGTTT
7730643 GAATTCAAAACATGAAAAATCTTAA
66 GAATTCAAAACATGAAAAATCTTAA
* *
7730668 ACTTTTTTTATAAAAATTATTAAAAAAACAACTTTAAATTAAAGAAAAATATTAAAGTAAGGTTT
1 ACTTTTTTTACAAAAATTATTAAAAAAACAACTTTAAATTAAAGAAAAATATCAAAGTAAGGTTT
*
7730733 GAATTCAAATCATGAAAAATCTTAA
66 GAATTCAAAACATGAAAAATCTTAA
7730758 ACTTT
1 ACTTT
7730763 GCTATTCAAC
Statistics
Matches: 88, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
89 37 0.42
90 51 0.58
ACGTcount: A:0.50, C:0.09, G:0.07, T:0.35
Consensus pattern (90 bp):
ACTTTTTTTACAAAAATTATTAAAAAAACAACTTTAAATTAAAGAAAAATATCAAAGTAAGGTTT
GAATTCAAAACATGAAAAATCTTAA
Found at i:7740033 original size:2 final size:2
Alignment explanation
Indices: 7740022--7740053 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
7740012 TTTGTTCTTT
7740022 TC TC TC -C TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
7740054 TGCTTCGTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:7747869 original size:6 final size:6
Alignment explanation
Indices: 7747858--7747886 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
7747848 TTCTCGGTCT
7747858 TCCTCA TCCTCA TCCTCA TCCTCA TCCTC
1 TCCTCA TCCTCA TCCTCA TCCTCA TCCTC
7747887 CTCATCTGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.14, C:0.52, G:0.00, T:0.34
Consensus pattern (6 bp):
TCCTCA
Found at i:7752948 original size:63 final size:63
Alignment explanation
Indices: 7752841--7752966 Score: 216
Period size: 63 Copynumber: 2.0 Consensus size: 63
7752831 CAACCTGATT
* *
7752841 TATAACTTAAATTTGGTAATTCAAACTCTATTAAGTTGCACCTCATTCTCGATGTGATAAGAA
1 TATAACTTAAATTTGGTAATTCAAACTCTATTAAGATACACCTCATTCTCGATGTGATAAGAA
* *
7752904 TATAACTTAAATTTGGTAATTCAAACTCTATTAAGATACGCCTCATTCTTGATGTGATAAGAA
1 TATAACTTAAATTTGGTAATTCAAACTCTATTAAGATACACCTCATTCTCGATGTGATAAGAA
7752967 AATATCCATG
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.37
Consensus pattern (63 bp):
TATAACTTAAATTTGGTAATTCAAACTCTATTAAGATACACCTCATTCTCGATGTGATAAGAA
Found at i:7753402 original size:52 final size:52
Alignment explanation
Indices: 7753345--7753449 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 52
7753335 TTATCTCCTA
*
7753345 AACTTTAGCATCTAATCTCCTAATTAAAAAGAAAGAGATATACACAAAAACT
1 AACTTTAGCATCTAATCTCCTAATAAAAAAGAAAGAGATATACACAAAAACT
7753397 AACTTTAGCATCTAATCTCCTAATAAAAAAGAAAGAGATATACACAAAAACT
1 AACTTTAGCATCTAATCTCCTAATAAAAAAGAAAGAGATATACACAAAAACT
7753449 A
1 A
7753450 CCATACATAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.51, C:0.17, G:0.08, T:0.24
Consensus pattern (52 bp):
AACTTTAGCATCTAATCTCCTAATAAAAAAGAAAGAGATATACACAAAAACT
Found at i:7757987 original size:52 final size:53
Alignment explanation
Indices: 7757925--7758030 Score: 178
Period size: 53 Copynumber: 2.0 Consensus size: 53
7757915 TTATCTCCTA
* * *
7757925 AACTTTAGCATCTAATCTTCTAATT-AAAAATAAATAGATATACACAAAAACT
1 AACTTTAGCATCTAATCTCCTAATTAAAAAAGAAAGAGATATACACAAAAACT
7757977 AACTTTAGCATCTAATCTCCTAATTAAAAAAGAAAGAGATATACACAAAAACT
1 AACTTTAGCATCTAATCTCCTAATTAAAAAAGAAAGAGATATACACAAAAACT
7758030 A
1 A
7758031 CCATACATAT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
52 24 0.48
53 26 0.52
ACGTcount: A:0.51, C:0.16, G:0.06, T:0.27
Consensus pattern (53 bp):
AACTTTAGCATCTAATCTCCTAATTAAAAAAGAAAGAGATATACACAAAAACT
Found at i:7759395 original size:16 final size:16
Alignment explanation
Indices: 7759373--7759412 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
7759363 AAACAATTGA
*
7759373 ATTACAGCTCTATTTC
1 ATTACAGCTCTATTCC
*
7759389 GTTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
7759405 ATTACAGC
1 ATTACAGC
7759413 GAACCAAACG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.25, C:0.28, G:0.10, T:0.38
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:7764034 original size:33 final size:31
Alignment explanation
Indices: 7763960--7764036 Score: 77
Period size: 32 Copynumber: 2.4 Consensus size: 31
7763950 TTTTAAAAAA
7763960 TTTATTTTTTATTTGTTGAAAAATATTTATT
1 TTTATTTTTTATTTGTTGAAAAATATTTATT
* *
7763991 TTAATGTTTTTATTGTGGTT--AATATATTTTATTT
1 TTTAT-TTTTTATT-T-GTTGAAAAATA-TTTA-TT
7764025 TTTATTTTTTAT
1 TTTATTTTTTAT
7764037 ATAAAAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
31 4 0.11
32 13 0.34
33 12 0.32
34 9 0.24
ACGTcount: A:0.25, C:0.00, G:0.08, T:0.68
Consensus pattern (31 bp):
TTTATTTTTTATTTGTTGAAAAATATTTATT
Found at i:7764535 original size:35 final size:35
Alignment explanation
Indices: 7764493--7764566 Score: 139
Period size: 35 Copynumber: 2.1 Consensus size: 35
7764483 CCCAAATATC
7764493 CATTAACCCAAATAACCCAATACCCAGCCCAATTA
1 CATTAACCCAAATAACCCAATACCCAGCCCAATTA
*
7764528 CATTAACCCAAATAGCCCAATACCCAGCCCAATTA
1 CATTAACCCAAATAACCCAATACCCAGCCCAATTA
7764563 CATT
1 CATT
7764567 GAAGCCCGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.41, C:0.36, G:0.04, T:0.19
Consensus pattern (35 bp):
CATTAACCCAAATAACCCAATACCCAGCCCAATTA
Found at i:7765747 original size:24 final size:24
Alignment explanation
Indices: 7765689--7765822 Score: 107
Period size: 24 Copynumber: 5.5 Consensus size: 24
7765679 CTAAGCTTAA
7765689 TATTATTTTTAAATTTATCATGTAT
1 TATTA-TTTTAAATTTATCATGTAT
*
7765714 T-TGGTA-TTTAAATTCATCATGTAT
1 TAT--TATTTTAAATTTATCATGTAT
*
7765738 TATTATTTTAAGTTTTAT-ATGTAT
1 TATTATTTTAA-ATTTATCATGTAT
* *
7765762 TATTATTCTAAGTTT-TCATGTGTAAT
1 TATTATTTTAAATTTATCA--TGT-AT
* *
7765788 TACTT-TTTTTAATTTATCATATAT
1 TA-TTATTTTAAATTTATCATGTAT
7765812 TATTATTTTAA
1 TATTATTTTAA
7765823 TTTCCATCTA
Statistics
Matches: 87, Mismatches: 10, Indels: 25
0.71 0.08 0.20
Matches are distributed among these distances:
22 1 0.01
23 8 0.09
24 49 0.56
25 11 0.13
26 13 0.15
27 5 0.06
ACGTcount: A:0.30, C:0.05, G:0.07, T:0.58
Consensus pattern (24 bp):
TATTATTTTAAATTTATCATGTAT
Found at i:7765837 original size:22 final size:23
Alignment explanation
Indices: 7765794--7765837 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
7765784 TAATTACTTT
*
7765794 TTTTAATTTATCATATATTATTA
1 TTTTAATTTACCATATATTATTA
*
7765817 TTTTAATTT-CCATCTATTATT
1 TTTTAATTTACCATATATTATT
7765838 TTATATAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.30, C:0.09, G:0.00, T:0.61
Consensus pattern (23 bp):
TTTTAATTTACCATATATTATTA
Found at i:7765876 original size:33 final size:33
Alignment explanation
Indices: 7765837--7765917 Score: 146
Period size: 33 Copynumber: 2.5 Consensus size: 33
7765827 CATCTATTAT
7765837 TTTATATAGTTTTTTTATGTAATTTCAATATAA
1 TTTATATAGTTTTTTTATGTAATTTCAATATAA
7765870 TTTATATAGTTTTTTTATGTAATTTCAATATAA
1 TTTATATAGTTTTTTTATGTAATTTCAATATAA
*
7765903 TTTATACA-TTTTTTT
1 TTTATATAGTTTTTTT
7765918 GGTTTTATTT
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 7 0.15
33 40 0.85
ACGTcount: A:0.31, C:0.04, G:0.05, T:0.60
Consensus pattern (33 bp):
TTTATATAGTTTTTTTATGTAATTTCAATATAA
Found at i:7766021 original size:18 final size:16
Alignment explanation
Indices: 7766000--7766045 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 16
7765990 TTCTTATATA
7766000 ATACTATTTTCTTAATTT
1 ATAC-ATTTT-TTAATTT
*
7766018 ATACCATTTTTTTATTT
1 ATA-CATTTTTTAATTT
7766035 ATACATTTTTT
1 ATACATTTTTT
7766046 TTGTACATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
16 8 0.31
17 9 0.35
18 8 0.31
19 1 0.04
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.63
Consensus pattern (16 bp):
ATACATTTTTTAATTT
Found at i:7766036 original size:17 final size:17
Alignment explanation
Indices: 7766000--7766046 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 17
7765990 TTCTTATATA
* *
7766000 ATACTATTTTCTTAATTT
1 ATACCATTTT-TTTATTT
7766018 ATACCATTTTTTTATTT
1 ATACCATTTTTTTATTT
7766035 ATA-CATTTTTTT
1 ATACCATTTTTTT
7766047 TGTACATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
16 9 0.33
17 9 0.33
18 9 0.33
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.64
Consensus pattern (17 bp):
ATACCATTTTTTTATTT
Found at i:7766500 original size:13 final size:13
Alignment explanation
Indices: 7766482--7766511 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
7766472 TGTATTTTAT
7766482 AAATTTATATTAA
1 AAATTTATATTAA
7766495 AAATTTATATTAA
1 AAATTTATATTAA
7766508 AAAT
1 AAAT
7766512 AAATAAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (13 bp):
AAATTTATATTAA
Found at i:7767029 original size:19 final size:19
Alignment explanation
Indices: 7767005--7767070 Score: 62
Period size: 19 Copynumber: 3.3 Consensus size: 19
7766995 TGTACTGATA
*
7767005 ATTTTTTATAGCAATTAAT
1 ATTTTTTATAGAAATTAAT
*
7767024 ATTTTTAAACTATGAAAATTAAT
1 ATTTTT-TA-TA-G-AAATTAAT
*
7767047 ATTTTTTATAGTAATTAAT
1 ATTTTTTATAGAAATTAAT
7767066 -TTTTT
1 ATTTTT
7767071 ATTTTAAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
18 5 0.13
19 13 0.33
20 2 0.05
21 4 0.10
22 2 0.05
23 13 0.33
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.55
Consensus pattern (19 bp):
ATTTTTTATAGAAATTAAT
Found at i:7767792 original size:125 final size:125
Alignment explanation
Indices: 7767568--7767855 Score: 461
Period size: 125 Copynumber: 2.3 Consensus size: 125
7767558 ATCTATTAAG
* * *
7767568 GAAATCGCTCCCACGTGGACGCGTTTTTGATACAGTAGGTCCTGCAAAAATAATTTCGAGTTGAC
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
* * *
7767633 GTTTCTAAGCAAATAGTATAAAAAATGCTTCAAGCAGGATGCTTTATCA-AAAGAATTTCT
66 GTTTCTAAGAAAATAGTATAAAAAACGCTCCAAGCAGGATGCTTTATCAGAAA-AATTTCT
* *
7767693 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACGGTAGGTTCTGAAAAAATAATTTCGAGTTGAC
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
* * *
7767758 GTTTCTGAGAAAATAGTATAAAAAACGCTCCAAGCAGGATGCTTTATCAGAAATATTTTT
66 GTTTCTAAGAAAATAGTATAAAAAACGCTCCAAGCAGGATGCTTTATCAGAAAAATTTCT
7767818 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAG
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAG
7767856 CATGTTTAGG
Statistics
Matches: 150, Mismatches: 12, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
125 147 0.98
126 3 0.02
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (125 bp):
GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
GTTTCTAAGAAAATAGTATAAAAAACGCTCCAAGCAGGATGCTTTATCAGAAAAATTTCT
Found at i:7771070 original size:49 final size:49
Alignment explanation
Indices: 7770952--7771072 Score: 206
Period size: 49 Copynumber: 2.5 Consensus size: 49
7770942 TAAGAATATT
* * *
7770952 AACTATTTTGTATTTTATTAAATGAAATAATATCAAAATATTTAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
7771001 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
*
7771050 AACTATTTTGCATTTTATTACAT
1 AACTATTTTGTATTTTATTACAT
7771073 TAATATAAAC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 68 1.00
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.44
Consensus pattern (49 bp):
AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
Found at i:7773394 original size:10 final size:11
Alignment explanation
Indices: 7773352--7773397 Score: 58
Period size: 11 Copynumber: 4.2 Consensus size: 11
7773342 TTTAAATAGG
*
7773352 AATTTGAGAGG
1 AATTTGAGAGA
7773363 AATTTGAGAGA
1 AATTTGAGAGA
*
7773374 ATATTAGAGAGA
1 A-ATTTGAGAGA
7773386 AATTT-AGAGA
1 AATTTGAGAGA
7773396 AA
1 AA
7773398 GGATTTAGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
10 7 0.23
11 14 0.45
12 10 0.32
ACGTcount: A:0.48, C:0.00, G:0.26, T:0.26
Consensus pattern (11 bp):
AATTTGAGAGA
Found at i:7780148 original size:61 final size:61
Alignment explanation
Indices: 7780077--7780241 Score: 267
Period size: 61 Copynumber: 2.7 Consensus size: 61
7780067 AATTTAGCCA
* * * * * *
7780077 TCAATGTTTACACAATTTGTCAATTTAGTTTTAATTCTAAAAAAGTAAATAAATTTGACCT
1 TCAATATTTACAAAATCTATCAATTTAGTTTTAATTCTAAAAAAATAAATAAATTTGACAT
7780138 TCAATATTTACAAAATCTATCAATTTAGTTTTAATTCTAAAAAAATAAATAAATTTGACAT
1 TCAATATTTACAAAATCTATCAATTTAGTTTTAATTCTAAAAAAATAAATAAATTTGACAT
*
7780199 TCAATATTTACAAAATCTATCAATTTAGTTTTAACTCTAAAAA
1 TCAATATTTACAAAATCTATCAATTTAGTTTTAATTCTAAAAA
7780242 TTAAATATAT
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 97 1.00
ACGTcount: A:0.44, C:0.12, G:0.05, T:0.40
Consensus pattern (61 bp):
TCAATATTTACAAAATCTATCAATTTAGTTTTAATTCTAAAAAAATAAATAAATTTGACAT
Found at i:7780163 original size:31 final size:31
Alignment explanation
Indices: 7780128--7780224 Score: 90
Period size: 31 Copynumber: 3.2 Consensus size: 31
7780118 AAAGTAAATA
*
7780128 AATTTGACCTTCAATATTTACAAAATCTATC
1 AATTTGACATTCAATATTTACAAAATCTATC
** * * * ** *
7780159 AATTT-AGTTTTAAT-TCTAAAAAAATAAATA
1 AATTTGACATTCAATAT-TTACAAAATCTATC
7780189 AATTTGACATTCAATATTTACAAAATCTATC
1 AATTTGACATTCAATATTTACAAAATCTATC
7780220 AATTT
1 AATTT
7780225 AGTTTTAACT
Statistics
Matches: 47, Mismatches: 16, Indels: 6
0.68 0.23 0.09
Matches are distributed among these distances:
29 1 0.02
30 20 0.43
31 25 0.53
32 1 0.02
ACGTcount: A:0.44, C:0.12, G:0.03, T:0.40
Consensus pattern (31 bp):
AATTTGACATTCAATATTTACAAAATCTATC
Found at i:7781571 original size:83 final size:83
Alignment explanation
Indices: 7781432--7781597 Score: 314
Period size: 83 Copynumber: 2.0 Consensus size: 83
7781422 CCAAAGGAAA
* *
7781432 GATAAACTCGAGAGCGAACTCAATGCCTACAGGGTAATTCAGTTTTTGTTATTTCAAATTATTTT
1 GATAAACTCGAGAGCGAACTCAATGCCTACAGGGTAATTCAGTTTTTCTTACTTCAAATTATTTT
7781497 CTAGAAACTAGTTAGGGC
66 CTAGAAACTAGTTAGGGC
7781515 GATAAACTCGAGAGCGAACTCAATGCCTACAGGGTAATTCAGTTTTTCTTACTTCAAATTATTTT
1 GATAAACTCGAGAGCGAACTCAATGCCTACAGGGTAATTCAGTTTTTCTTACTTCAAATTATTTT
7781580 CTAGAAACTAGTTAGGGC
66 CTAGAAACTAGTTAGGGC
7781598 TAACTTCTTT
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
83 81 1.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (83 bp):
GATAAACTCGAGAGCGAACTCAATGCCTACAGGGTAATTCAGTTTTTCTTACTTCAAATTATTTT
CTAGAAACTAGTTAGGGC
Found at i:7811590 original size:18 final size:20
Alignment explanation
Indices: 7811554--7811590 Score: 51
Period size: 18 Copynumber: 1.9 Consensus size: 20
7811544 TAATTTTATC
7811554 TAAAACTATCTATAATAATG
1 TAAAACTATCTATAATAATG
*
7811574 TAAAA-TAT-TATATTAAT
1 TAAAACTATCTATAATAAT
7811591 AAAATTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 8 0.50
19 3 0.19
20 5 0.31
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (20 bp):
TAAAACTATCTATAATAATG
Found at i:7811615 original size:31 final size:30
Alignment explanation
Indices: 7811576--7811633 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 30
7811566 TAATAATGTA
7811576 AAATATTATATTAATAAAATTAAAATTATG
1 AAATATTATATTAATAAAATTAAAATTATG
* **
7811606 AAATAATTATTTTTCTAAAATTAAAATT
1 AAAT-ATTATATTAATAAAATTAAAATT
7811634 TAGTATTATC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 4 0.17
31 20 0.83
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (30 bp):
AAATATTATATTAATAAAATTAAAATTATG
Found at i:7811988 original size:22 final size:24
Alignment explanation
Indices: 7811960--7812006 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
7811950 AATTTGTACT
7811960 TTTTGGT-C-GCACTTTATAATCA
1 TTTTGGTACAGCACTTTATAATCA
**
7811982 TTTTGGTACATTACTTTATAATCA
1 TTTTGGTACAGCACTTTATAATCA
7812006 T
1 T
7812007 ACATTATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 7 0.33
23 1 0.05
24 13 0.62
ACGTcount: A:0.26, C:0.15, G:0.11, T:0.49
Consensus pattern (24 bp):
TTTTGGTACAGCACTTTATAATCA
Found at i:7819231 original size:18 final size:18
Alignment explanation
Indices: 7819208--7819255 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
7819198 TTCCTGTTAC
7819208 TGACCTGAAATTCAAATA
1 TGACCTGAAATTCAAATA
7819226 TGACCTGAAATTCAAATA
1 TGACCTGAAATTCAAATA
* *
7819244 TAACCTGGAATT
1 TGACCTGAAATT
7819256 ATCTACCCAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (18 bp):
TGACCTGAAATTCAAATA
Found at i:7825142 original size:15 final size:15
Alignment explanation
Indices: 7825124--7825155 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7825114 TTATTAATGA
*
7825124 AGTACTTATTTTTCT
1 AGTACTTATTATTCT
7825139 AGTACTTATTATTCT
1 AGTACTTATTATTCT
7825154 AG
1 AG
7825156 GGAATCATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.12, G:0.09, T:0.53
Consensus pattern (15 bp):
AGTACTTATTATTCT
Found at i:7830713 original size:24 final size:24
Alignment explanation
Indices: 7830674--7830801 Score: 82
Period size: 24 Copynumber: 5.2 Consensus size: 24
7830664 AGCTCTTTCA
7830674 AGCCATATAATGGGAAGCTCCAAGG
1 AGCCAT-TAATGGGAAGCTCCAAGG
*
7830699 AGCCATTAATGGGAAGCT-CATACG
1 AGCCATTAATGGGAAGCTCCA-AGG
* * * *
7830723 AGCCAATATTGGGAAGGTTCAAGCG
1 AGCCATTAATGGGAAGCTCCAAG-G
** *
7830748 AGTAAAT-ATCGGGAAGCTCCGAA-G
1 AGCCATTAAT-GGGAAGCTCC-AAGG
* *
7830772 AGCCATTAATCTGGAAGCTCACAAAG
1 AGCCATTAAT-GGGAAGCTC-CAAGG
7830798 AGCC
1 AGCC
7830802 TTTACTCAGG
Statistics
Matches: 81, Mismatches: 14, Indels: 15
0.74 0.13 0.14
Matches are distributed among these distances:
23 2 0.02
24 36 0.44
25 35 0.43
26 8 0.10
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (24 bp):
AGCCATTAATGGGAAGCTCCAAGG
Found at i:7830843 original size:26 final size:26
Alignment explanation
Indices: 7830753--7830844 Score: 100
Period size: 26 Copynumber: 3.6 Consensus size: 26
7830743 AAGCGAGTAA
7830753 ATATCGGGAAGCTC-CGAAGAGCCAT
1 ATATCGGGAAGCTCACGAAGAGCCAT
* *
7830778 -TAATCTGGAAGCTCACAAAGAGCC-T
1 AT-ATCGGGAAGCTCACGAAGAGCCAT
* *
7830803 TTACTCAGGAAGCTCACGAAGAGCCAT
1 ATA-TCGGGAAGCTCACGAAGAGCCAT
*
7830830 ATATCGGGACGCTCA
1 ATATCGGGAAGCTCA
7830845 TAAGAGCTAT
Statistics
Matches: 55, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
24 1 0.02
25 13 0.24
26 38 0.69
27 3 0.05
ACGTcount: A:0.33, C:0.25, G:0.24, T:0.18
Consensus pattern (26 bp):
ATATCGGGAAGCTCACGAAGAGCCAT
Found at i:7830923 original size:24 final size:24
Alignment explanation
Indices: 7830891--7830972 Score: 58
Period size: 24 Copynumber: 3.4 Consensus size: 24
7830881 ACAACCAATC
*
7830891 GGGATGCTCCGAAGAGCTATTAAT
1 GGGAAGCTCCGAAGAGCTATTAAT
* * *
7830915 GGGAAGCT-CGCAAGAACCATATATT
1 GGGAAGCTCCG-AAGAGCTAT-TAAT
* ** *
7830940 GGGGAGCTCATAAGAGCTAATAAT
1 GGGAAGCTCCGAAGAGCTATTAAT
*
7830964 GGGACGCTC
1 GGGAAGCTC
7830973 TTTTGAGCTG
Statistics
Matches: 42, Mismatches: 13, Indels: 6
0.69 0.21 0.10
Matches are distributed among these distances:
23 2 0.05
24 24 0.57
25 16 0.38
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (24 bp):
GGGAAGCTCCGAAGAGCTATTAAT
Found at i:7833257 original size:46 final size:46
Alignment explanation
Indices: 7833190--7833329 Score: 226
Period size: 46 Copynumber: 3.0 Consensus size: 46
7833180 ACAATGCTAT
* * *
7833190 AACTCAGTATGATTTCCTTCACTGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
*
7833236 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTTAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
* *
7833282 AACTCAATATGGTTTTCTTCACTGAAAGACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
7833328 AA
1 AA
7833330 TTTGCCATGG
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 87 1.00
ACGTcount: A:0.31, C:0.26, G:0.08, T:0.35
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
Found at i:7838160 original size:24 final size:24
Alignment explanation
Indices: 7838127--7838180 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
7838117 ATAATAAAAG
7838127 ATTT-AATTAATATAACTTCAATA
1 ATTTAAATTAATATAACTTCAATA
7838150 ATTTAAATTAATATAACTTCAATA
1 ATTTAAATTAATATAACTTCAATA
7838174 ATTTAAA
1 ATTTAAA
7838181 ATTGTAATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 4 0.13
24 26 0.87
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (24 bp):
ATTTAAATTAATATAACTTCAATA
Found at i:7840945 original size:16 final size:17
Alignment explanation
Indices: 7840924--7840964 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
7840914 ATGAAAATAG
7840924 ATTTTAAATTAA-AAAA
1 ATTTTAAATTAATAAAA
*
7840940 ATTTT-AATTAATTAAA
1 ATTTTAAATTAATAAAA
7840956 ATGTTTAAA
1 AT-TTTAAA
7840965 CCTAAACCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 6 0.29
16 10 0.48
17 3 0.14
18 2 0.10
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (17 bp):
ATTTTAAATTAATAAAA
Found at i:7847898 original size:21 final size:21
Alignment explanation
Indices: 7847874--7847918 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
7847864 CATTTTTTAT
* *
7847874 TTTTATGAATATATATACATA
1 TTTTATAAATACATATACATA
* *
7847895 TTTTGTAAATACATGTACATA
1 TTTTATAAATACATATACATA
7847916 TTT
1 TTT
7847919 ATTTTTTTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.49
Consensus pattern (21 bp):
TTTTATAAATACATATACATA
Found at i:7852741 original size:21 final size:22
Alignment explanation
Indices: 7852711--7852751 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
7852701 AAATTAAATG
7852711 ATTTAATAATAATA-ATAATCA
1 ATTTAATAATAATATATAATCA
*
7852732 ATTTATTAATAATATATAAT
1 ATTTAATAATAATATATAAT
7852752 TTAGCTAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
ATTTAATAATAATATATAATCA
Found at i:7852743 original size:18 final size:18
Alignment explanation
Indices: 7852720--7852754 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
7852710 GATTTAATAA
7852720 TAATAATA-ATCAATTTAT
1 TAATAATATAT-AATTTAT
7852738 TAATAATATATAATTTA
1 TAATAATATATAATTTA
7852755 GCTAATCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (18 bp):
TAATAATATATAATTTAT
Found at i:7853542 original size:30 final size:29
Alignment explanation
Indices: 7853490--7853553 Score: 74
Period size: 30 Copynumber: 2.2 Consensus size: 29
7853480 AATAGCTCAA
* *
7853490 ATATTTTCATATATTTCATTTAAGCACAT
1 ATATTTTCATATAATTAATTTAAGCACAT
* *
7853519 ATATTTCTCATTTAATTAATTTAAGTACAT
1 ATATTT-TCATATAATTAATTTAAGCACAT
*
7853549 CTATT
1 ATATT
7853554 AACTTATAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 6 0.21
30 23 0.79
ACGTcount: A:0.34, C:0.12, G:0.03, T:0.50
Consensus pattern (29 bp):
ATATTTTCATATAATTAATTTAAGCACAT
Found at i:7862748 original size:15 final size:15
Alignment explanation
Indices: 7862728--7862758 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7862718 TTGAATTTTG
7862728 AGTTAATTAAATTGA
1 AGTTAATTAAATTGA
7862743 AGTTAATTAAATTGA
1 AGTTAATTAAATTGA
7862758 A
1 A
7862759 TTATTTGAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.13, T:0.39
Consensus pattern (15 bp):
AGTTAATTAAATTGA
Found at i:7862969 original size:22 final size:20
Alignment explanation
Indices: 7862929--7862975 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 20
7862919 CAAAGATTAA
7862929 AAAAATTAAAATAATTTTC-
1 AAAAATTAAAATAATTTTCT
*
7862948 AAAAATTCAAAATTTATATTTCT
1 AAAAATT-AAAA-TAAT-TTTCT
7862971 AAAAA
1 AAAAA
7862976 AATTATTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 4 0.17
21 3 0.13
22 4 0.17
23 5 0.22
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.36
Consensus pattern (20 bp):
AAAAATTAAAATAATTTTCT
Found at i:7875717 original size:19 final size:19
Alignment explanation
Indices: 7875693--7875745 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 19
7875683 TTTTTTAAAA
7875693 AATTTTATAAACTATTTAT
1 AATTTTATAAACTATTTAT
* *
7875712 AATTTTA-AAAGTTTTTAT
1 AATTTTATAAACTATTTAT
*
7875730 AATATT-TAAACTATTT
1 AATTTTATAAACTATTT
7875746 GTTAACATGA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
18 21 0.75
19 7 0.25
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.53
Consensus pattern (19 bp):
AATTTTATAAACTATTTAT
Found at i:7876281 original size:23 final size:23
Alignment explanation
Indices: 7876254--7876299 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
7876244 ATGCAATGCA
**
7876254 TGCTTTCCTTTTAATTTTTATTT
1 TGCTTTCCTTTTAAGGTTTATTT
*
7876277 TGCTTTGCTTTTAAGGTTTATTT
1 TGCTTTCCTTTTAAGGTTTATTT
7876300 ATTTATCTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.13, C:0.11, G:0.11, T:0.65
Consensus pattern (23 bp):
TGCTTTCCTTTTAAGGTTTATTT
Found at i:7876793 original size:23 final size:23
Alignment explanation
Indices: 7876763--7876808 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
7876753 ACAAGCAATA
7876763 TGTAATATCCCGAAAATTACTAC
1 TGTAATATCCCGAAAATTACTAC
7876786 TGTAATATCCCGAAAATTACTAC
1 TGTAATATCCCGAAAATTACTAC
7876809 AATAAGAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (23 bp):
TGTAATATCCCGAAAATTACTAC
Found at i:7877304 original size:8 final size:8
Alignment explanation
Indices: 7877291--7877315 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7877281 TTTCAAATAA
7877291 TATTTTAT
1 TATTTTAT
7877299 TATTTTAT
1 TATTTTAT
7877307 TATTTTAT
1 TATTTTAT
7877315 T
1 T
7877316 TAGTATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:7878576 original size:22 final size:22
Alignment explanation
Indices: 7878543--7878603 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
7878533 GCCCGGCCCG
* *
7878543 TTTTTAATTAAAATTAAAATTAT
1 TTTTTAA-TAAAATTAAAACTAA
7878566 TTTTTAATAAAATTAAAACTAA
1 TTTTTAATAAAATTAAAACTAA
* *
7878588 TTGTTATTAAAATTAA
1 TTTTTAATAAAATTAA
7878604 TTGTTAGTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 27 0.79
23 7 0.21
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
TTTTTAATAAAATTAAAACTAA
Found at i:7878616 original size:16 final size:16
Alignment explanation
Indices: 7878579--7878618 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
7878569 TTAATAAAAT
* *
7878579 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
7878595 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
7878611 TAAAATTA
1 TAAAATTA
7878619 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:7878680 original size:66 final size:66
Alignment explanation
Indices: 7878607--7878760 Score: 241
Period size: 59 Copynumber: 2.4 Consensus size: 66
7878597 AAATTAATTG
*
7878607 TTAGTAAAATTATCAAATTATTAATTGTTAATTGTATTAATTATTGTAATAAAATCTAACATTTG
1 TTAGTAAATTTATCAAATTATTAATTGTTAATTGTATTAATTATTGTAATAAAATCTAACATTTG
7878672 A
66 A
*
7878673 TTAGTAAATTTATC-AA--ATT-A---TTAATTGTATTAATTGTTGTAATAAAATCTAACATTTG
1 TTAGTAAATTTATCAAATTATTAATTGTTAATTGTATTAATTATTGTAATAAAATCTAACATTTG
7878731 A
66 A
7878732 TTAGTAAATTTATCAAATTATTAATTGTT
1 TTAGTAAATTTATCAAATTATTAATTGTT
7878761 GTAACAAAAT
Statistics
Matches: 79, Mismatches: 2, Indels: 14
0.83 0.02 0.15
Matches are distributed among these distances:
59 52 0.66
60 2 0.03
62 4 0.05
63 4 0.05
65 2 0.03
66 15 0.19
ACGTcount: A:0.41, C:0.05, G:0.08, T:0.47
Consensus pattern (66 bp):
TTAGTAAATTTATCAAATTATTAATTGTTAATTGTATTAATTATTGTAATAAAATCTAACATTTG
A
Found at i:7878696 original size:50 final size:50
Alignment explanation
Indices: 7878641--7878789 Score: 190
Period size: 59 Copynumber: 2.8 Consensus size: 50
7878631 TTGTTAATTG
7878641 TATTAATTATTGTAATAAAATCTAACATTTGATTAGTAAATTTATCAAAT
1 TATTAATTATTGTAATAAAATCTAACATTTGATTAGTAAATTTATCAAAT
7878691 TATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCAAAT
1 TATT-A----ATT-A---TTGTAATAAAATCTAACATTTGATTAGTAAATTTATCAAAT
* * *
7878750 TATTAATTGTTGTAACAAAATCTAATATTTGATTAGTAAA
1 TATTAATTATTGTAATAAAATCTAACATTTGATTAGTAAA
7878790 ACAAACTTGA
Statistics
Matches: 87, Mismatches: 3, Indels: 18
0.81 0.03 0.17
Matches are distributed among these distances:
50 33 0.38
51 1 0.01
54 3 0.03
55 3 0.03
56 1 0.01
58 1 0.01
59 45 0.52
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.44
Consensus pattern (50 bp):
TATTAATTATTGTAATAAAATCTAACATTTGATTAGTAAATTTATCAAAT
Found at i:7878697 original size:59 final size:59
Alignment explanation
Indices: 7878629--7878759 Score: 244
Period size: 59 Copynumber: 2.2 Consensus size: 59
7878619 TCAAATTATT
*
7878629 AATTGTTAATTGTATTAATTATTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
1 AATTATTAATTGTATTAATTATTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
*
7878688 AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
1 AATTATTAATTGTATTAATTATTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
7878747 AATTATTAATTGT
1 AATTATTAATTGT
7878760 TGTAACAAAA
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 70 1.00
ACGTcount: A:0.40, C:0.05, G:0.08, T:0.47
Consensus pattern (59 bp):
AATTATTAATTGTATTAATTATTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
Found at i:7883541 original size:90 final size:87
Alignment explanation
Indices: 7883459--7883675 Score: 190
Period size: 84 Copynumber: 2.5 Consensus size: 87
7883449 TTTTTGTCAT
* * * * * *
7883459 TTAATTGGGTACATAAAATTTTAAAATATATAAAAATACCCTAAAAATCTTTTTAGAAAAAGCAA
1 TTAATTGAGTACATAAAATTTCAAAATACATAAAAAGACCAT-AAAA-C-TTTTAAAAAAAGCAA
7883524 TTAAGCCCCTTCTTTTTTATTTCAC
63 TTAAGCCCCTTCTTTTTTATTTCAC
** * * *
7883549 TTAATTGAGTATTTAAACTTTCAAAATACATCAAAAGACCATTAAACTTTTAAAAAAAGCAATTA
1 TTAATTGAGTACATAAAATTTCAAAATACATAAAAAGACCATAAAACTTTTAAAAAAAGCAATTA
* * *
7883614 AGCTCC-TATTTTTT-TGT-AC
66 AGCCCCTTCTTTTTTATTTCAC
* ** * *
7883633 TCAATTGAGTATTTGAACTGTT-AAAATACATAAAAAGTACCAT
1 TTAATTGAGTACATAAAAT-TTCAAAATACATAAAAAG-ACCAT
7883676 TTGACCATTA
Statistics
Matches: 108, Mismatches: 17, Indels: 9
0.81 0.13 0.07
Matches are distributed among these distances:
84 33 0.31
85 9 0.08
86 7 0.06
87 22 0.20
88 1 0.01
89 3 0.03
90 33 0.31
ACGTcount: A:0.42, C:0.14, G:0.08, T:0.36
Consensus pattern (87 bp):
TTAATTGAGTACATAAAATTTCAAAATACATAAAAAGACCATAAAACTTTTAAAAAAAGCAATTA
AGCCCCTTCTTTTTTATTTCAC
Found at i:7883669 original size:84 final size:88
Alignment explanation
Indices: 7883509--7883676 Score: 229
Period size: 84 Copynumber: 2.0 Consensus size: 88
7883499 CTAAAAATCT
* * * *
7883509 TTTTAGAAAAAGCAATTAAGCCCCTTCTTTTTTATTTCACTTAATTGAGTATTTAAACTTTCAAA
1 TTTTAAAAAAAGCAATTAAGCCCCTTATTTTTTATGTCACTCAATTGAGTATTTAAACTTTCAAA
*
7883574 ATACATCAAAAG-ACCATTAAAC
66 ATACATAAAAAGTACCATTAAAC
* *
7883596 TTTTAAAAAAAGCAATTAAGCTCC-TATTTTTT-TGT-ACTCAATTGAGTATTTGAACTGTT-AA
1 TTTTAAAAAAAGCAATTAAGCCCCTTATTTTTTATGTCACTCAATTGAGTATTTAAACT-TTCAA
7883657 AATACATAAAAAGTACCATT
65 AATACATAAAAAGTACCATT
7883677 TGACCATTAA
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
84 33 0.46
85 10 0.14
86 7 0.10
87 22 0.31
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.38
Consensus pattern (88 bp):
TTTTAAAAAAAGCAATTAAGCCCCTTATTTTTTATGTCACTCAATTGAGTATTTAAACTTTCAAA
ATACATAAAAAGTACCATTAAAC
Found at i:7883839 original size:26 final size:26
Alignment explanation
Indices: 7883774--7883841 Score: 84
Period size: 26 Copynumber: 2.6 Consensus size: 26
7883764 ACATGCGATA
*
7883774 AAAAATTATAAAAAATAAAAATTATT
1 AAAAATTAAAAAAAATAAAAATTATT
**
7883800 AAATTTTAATAAAAAATAAAAA-TATT
1 AAAAATTAA-AAAAAATAAAAATTATT
7883826 AAAAATTAGAAAAAAA
1 AAAAATTA-AAAAAAA
7883842 ATTATAAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
26 22 0.63
27 13 0.37
ACGTcount: A:0.71, C:0.00, G:0.01, T:0.28
Consensus pattern (26 bp):
AAAAATTAAAAAAAATAAAAATTATT
Found at i:7883840 original size:27 final size:26
Alignment explanation
Indices: 7883774--7883861 Score: 79
Period size: 27 Copynumber: 3.2 Consensus size: 26
7883764 ACATGCGATA
*
7883774 AAAAATT-ATAAAAAATAAAAATTATT
1 AAAAATTAAAAAAAAATAAAAA-TATT
** *
7883800 AAATTTTAATAAAAAATAAAAATATT
1 AAAAATTAAAAAAAAATAAAAATATT
7883826 AAAAATTAGAAAAAAAATTATAAAATACATT
1 AAAAATTA-AAAAAAAA-TA-AAAAT--ATT
7883857 AAAAA
1 AAAAA
7883862 GACCCTTTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
26 15 0.29
27 21 0.41
28 2 0.04
29 5 0.10
31 8 0.16
ACGTcount: A:0.69, C:0.01, G:0.01, T:0.28
Consensus pattern (26 bp):
AAAAATTAAAAAAAAATAAAAATATT
Found at i:7884043 original size:10 final size:10
Alignment explanation
Indices: 7884028--7884083 Score: 60
Period size: 10 Copynumber: 5.6 Consensus size: 10
7884018 ATACGATAAC
7884028 TTTTATATTT
1 TTTTATATTT
**
7884038 TTTTATA-AC
1 TTTTATATTT
7884047 TTTTATATTT
1 TTTTATATTT
*
7884057 CTTTATATTT
1 TTTTATATTT
7884067 TTTTATAATTT
1 TTTTAT-ATTT
*
7884078 TCTTAT
1 TTTTAT
7884084 GACATTATAA
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
9 7 0.19
10 21 0.57
11 9 0.24
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.71
Consensus pattern (10 bp):
TTTTATATTT
Found at i:7884069 original size:19 final size:19
Alignment explanation
Indices: 7884023--7884063 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
7884013 TTTTGATACG
*
7884023 ATAACTTTTATATTTTTTT
1 ATAACTTTTATATTTCTTT
7884042 ATAACTTTTATATTTCTTT
1 ATAACTTTTATATTTCTTT
7884061 ATA
1 ATA
7884064 TTTTTTTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.63
Consensus pattern (19 bp):
ATAACTTTTATATTTCTTT
Found at i:7884091 original size:29 final size:29
Alignment explanation
Indices: 7884030--7884092 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
7884020 ACGATAACTT
** *
7884030 TTATATTTTTTTATAACTTTTATATTTCT
1 TTATATTTTTTTATAACTTTTATATGACA
*
7884059 TTATATTTTTTTATAA-TTTTCTTATGACA
1 TTATATTTTTTTATAACTTTT-ATATGACA
7884088 TTATA
1 TTATA
7884093 AAATTTTTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 4 0.14
29 25 0.86
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (29 bp):
TTATATTTTTTTATAACTTTTATATGACA
Found at i:7884156 original size:19 final size:19
Alignment explanation
Indices: 7884117--7884158 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
7884107 TTTCTATATA
* **
7884117 TTTTATAAATTTTTACGAT
1 TTTTATAAAATTTTAAAAT
7884136 TTTTATAAAATTTTAAAAT
1 TTTTATAAAATTTTAAAAT
7884155 TTTT
1 TTTT
7884159 TTACGATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (19 bp):
TTTTATAAAATTTTAAAAT
Found at i:7884158 original size:9 final size:10
Alignment explanation
Indices: 7884117--7884179 Score: 58
Period size: 10 Copynumber: 6.4 Consensus size: 10
7884107 TTTCTATATA
7884117 TTTTATAAAT
1 TTTTATAAAT
**
7884127 TTTTA-CGAT
1 TTTTATAAAT
*
7884136 TTTTATAAAA
1 TTTTATAAAT
7884146 TTTTA-AAAT
1 TTTTATAAAT
* *
7884155 TTTTTTACGAT
1 TTTTATA-AAT
7884166 TTTTATAAAT
1 TTTTATAAAT
7884176 TTTT
1 TTTT
7884180 GTTTCTAATT
Statistics
Matches: 40, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
9 14 0.35
10 18 0.45
11 8 0.20
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.60
Consensus pattern (10 bp):
TTTTATAAAT
Found at i:7884231 original size:30 final size:28
Alignment explanation
Indices: 7884197--7884252 Score: 94
Period size: 28 Copynumber: 1.9 Consensus size: 28
7884187 ATTTATAATA
7884197 AAATTTAAGTAATTTTATATATTTTTATTT
1 AAATTTAA-TAATTTT-TATATTTTTATTT
7884227 AAATTTAATAATTTTTATATTTTTAT
1 AAATTTAATAATTTTTATATTTTTAT
7884253 AGATTTTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
28 11 0.42
29 7 0.27
30 8 0.31
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (28 bp):
AAATTTAATAATTTTTATATTTTTATTT
Found at i:7890872 original size:23 final size:24
Alignment explanation
Indices: 7890828--7890891 Score: 85
Period size: 23 Copynumber: 2.6 Consensus size: 24
7890818 TAATGTTAGC
7890828 AAAATAAAAAATACAAATTTAAAAACT
1 AAAA-AAAAAA-A-AAATTTAAAAACT
7890855 AAAAAAAAAAAAAA-TTAAAAACT
1 AAAAAAAAAAAAAATTTAAAAACT
*
7890878 AAAAAAAAATAAAA
1 AAAAAAAAAAAAAA
7890892 GGTCAGTATG
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
23 22 0.61
24 3 0.08
25 1 0.03
26 6 0.17
27 4 0.11
ACGTcount: A:0.80, C:0.05, G:0.00, T:0.16
Consensus pattern (24 bp):
AAAAAAAAAAAAAATTTAAAAACT
Found at i:7890875 original size:17 final size:17
Alignment explanation
Indices: 7890848--7890891 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
7890838 ATACAAATTT
*
7890848 AAAAACTAAAAA-AAAA
1 AAAAAATAAAAACAAAA
* *
7890864 AAAAATTAAAAACTAAA
1 AAAAAATAAAAACAAAA
7890881 AAAAAATAAAA
1 AAAAAATAAAA
7890892 GGTCAGTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 11 0.46
17 13 0.54
ACGTcount: A:0.84, C:0.05, G:0.00, T:0.11
Consensus pattern (17 bp):
AAAAAATAAAAACAAAA
Found at i:7891176 original size:15 final size:15
Alignment explanation
Indices: 7891156--7891188 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
7891146 TTAGGGTTAG
7891156 AGAAAAAGAAGAAGA
1 AGAAAAAGAAGAAGA
*
7891171 AGAAAAAGAAGGAGA
1 AGAAAAAGAAGAAGA
7891186 AGA
1 AGA
7891189 GGAAAAATGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (15 bp):
AGAAAAAGAAGAAGA
Found at i:7891589 original size:36 final size:36
Alignment explanation
Indices: 7891549--7891620 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
7891539 GTAATATTAT
*
7891549 TGCTGGTATATTGTTGCTTATGTTGTTATACATGGC
1 TGCTGGTATATTATTGCTTATGTTGTTATACATGGC
7891585 TGCTGGTATATTATTGCTTATGTTGTTATACATGGC
1 TGCTGGTATATTATTGCTTATGTTGTTATACATGGC
7891621 ATGGCTAACC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.18, C:0.11, G:0.24, T:0.47
Consensus pattern (36 bp):
TGCTGGTATATTATTGCTTATGTTGTTATACATGGC
Found at i:7894285 original size:46 final size:44
Alignment explanation
Indices: 7894181--7894288 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
7894171 TGTCTTTGAC
** * * *
7894181 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
7894225 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
7894271 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
7894289 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:7895250 original size:19 final size:20
Alignment explanation
Indices: 7895226--7895267 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
7895216 TGTTTCTTTC
7895226 TCTGTTTCGTCTC-TTCTAT
1 TCTGTTTCGTCTCTTTCTAT
* *
7895245 TCTGTTTCTTTTCTTTCTAT
1 TCTGTTTCGTCTCTTTCTAT
7895265 TCT
1 TCT
7895268 TTCTTTTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.05, C:0.24, G:0.07, T:0.64
Consensus pattern (20 bp):
TCTGTTTCGTCTCTTTCTAT
Found at i:7895296 original size:5 final size:5
Alignment explanation
Indices: 7895283--7895355 Score: 64
Period size: 5 Copynumber: 14.6 Consensus size: 5
7895273 TTGTTTTATG
7895283 TATATA TATAA TATAA TATAA TAT-A T-TAA TGATAA TATAA TATAA -A-AA
1 TATA-A TATAA TATAA TATAA TATAA TATAA T-ATAA TATAA TATAA TATAA
* *
7895331 CATAA TCATTAC TATAA TATAA TAT
1 TATAA T-A-TAA TATAA TATAA TAT
7895356 TTTTTTAACA
Statistics
Matches: 57, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
3 3 0.05
4 6 0.11
5 35 0.61
6 10 0.18
7 3 0.05
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:7895308 original size:19 final size:19
Alignment explanation
Indices: 7895284--7895326 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
7895274 TGTTTTATGT
7895284 ATATATATAAT-ATAATATA
1 ATATAT-TAATGATAATATA
7895303 ATATATTAATGATAATATA
1 ATATATTAATGATAATATA
7895322 ATATA
1 ATATA
7895327 AAAACATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (19 bp):
ATATATTAATGATAATATA
Found at i:7895336 original size:24 final size:24
Alignment explanation
Indices: 7895290--7895354 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
7895280 ATGTATATAT
* * *
7895290 ATAATATAATATAATATATTAATG
1 ATAATATAATATAATAAAATAATC
7895314 ATAATATAATATAA-AAACATAATC
1 ATAATATAATATAATAAA-ATAATC
*
7895338 ATTACTATAATATAATA
1 A-TAATATAATATAATA
7895355 TTTTTTTAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
23 2 0.06
24 19 0.56
25 12 0.35
26 1 0.03
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.37
Consensus pattern (24 bp):
ATAATATAATATAATAAAATAATC
Found at i:7896111 original size:99 final size:99
Alignment explanation
Indices: 7895934--7896114 Score: 283
Period size: 99 Copynumber: 1.8 Consensus size: 99
7895924 ACCCCTAAAA
**
7895934 AACAATCACTACATGCATATTATTAAAAAAAAATACTCGTTGCATGCATATTAAAAAATAGTCAA
1 AACAATCACTACATGCATATTATT--AAAAAAATACTCACTGCATGCATATTAAAAAATAGTCAA
7895999 CAACATGTATATTAAAAAAAAACAGTCATACCCACC
64 CAACATGTATATTAAAAAAAAACAGTCATACCCACC
* * *
7896035 AACAATCATTGCATGCATATTATT-AAAAAATACTTACTGCATGCATATTAAAAAAATAGTCAAC
1 AACAATCACTACATGCATATTATTAAAAAAATACTCACTGCATGCATATT-AAAAAATAGTCAAC
7896099 AACATGTATATTAAAA
65 AACATGTATATTAAAA
7896115 TCAGTCATAC
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
98 22 0.30
99 30 0.41
101 22 0.30
ACGTcount: A:0.49, C:0.17, G:0.07, T:0.27
Consensus pattern (99 bp):
AACAATCACTACATGCATATTATTAAAAAAATACTCACTGCATGCATATTAAAAAATAGTCAACA
ACATGTATATTAAAAAAAAACAGTCATACCCACC
Found at i:7898123 original size:61 final size:62
Alignment explanation
Indices: 7898048--7898178 Score: 210
Period size: 62 Copynumber: 2.1 Consensus size: 62
7898038 TTTCTATCAA
*
7898048 ACAATAACCAATAC-AAAATAATTTGATACAAAAACAACCATTTCTATCATGCACATGACAG
1 ACAATAACCAATACAAAAATAATTTAATACAAAAACAACCATTTCTATCATGCACATGACAG
* * * *
7898109 ACAATAACCAATACAAAAATAATTTAATACAAACACAACCATTTTTGTCATGCACATGGCAG
1 ACAATAACCAATACAAAAATAATTTAATACAAAAACAACCATTTCTATCATGCACATGACAG
7898171 ACAATAAC
1 ACAATAAC
7898179 AGACAATAAC
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
61 14 0.22
62 50 0.78
ACGTcount: A:0.49, C:0.21, G:0.07, T:0.23
Consensus pattern (62 bp):
ACAATAACCAATACAAAAATAATTTAATACAAAAACAACCATTTCTATCATGCACATGACAG
Found at i:7898446 original size:6 final size:6
Alignment explanation
Indices: 7898437--7898494 Score: 80
Period size: 6 Copynumber: 9.7 Consensus size: 6
7898427 AAATAACCCT
* * **
7898437 AAATCA AAATCA AAATCA AAATCA AAATCG AAATCG AAATCA AAATTG
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA
7898485 AAATCA AAAT
1 AAATCA AAAT
7898495 TGAAATCAGT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.62, C:0.14, G:0.05, T:0.19
Consensus pattern (6 bp):
AAATCA
Found at i:7898460 original size:18 final size:18
Alignment explanation
Indices: 7898410--7898581 Score: 100
Period size: 18 Copynumber: 9.4 Consensus size: 18
7898400 CATTAATAAC
7898410 AAAT-AAAATCAAAATCG
1 AAATCAAAATCAAAATCG
* *
7898427 AAATAACCCTAAATCAAAATCA
1 AAAT----CAAAATCAAAATCG
7898449 AAATCAAAATCAAAATCG
1 AAATCAAAATCAAAATCG
* *
7898467 AAATCGAAATCAAAATTG
1 AAATCAAAATCAAAATCG
**
7898485 AAATCAAAATTGAAATCAG
1 AAATCAAAATCAAAATC-G
* *** *
7898504 TGAAT--GTTTCAAAATTG
1 -AAATCAAAATCAAAATCG
7898521 AAATCAAAATCAAAATCG
1 AAATCAAAATCAAAATCG
** **
7898539 AAATTGAAATC-AAATTA
1 AAATCAAAATCAAAATCG
* * *
7898556 AAATTAAAATCAGAATAG
1 AAATCAAAATCAAAATCG
7898574 AAATCAAA
1 AAATCAAA
7898582 TTTGAAATTG
Statistics
Matches: 114, Mismatches: 31, Indels: 19
0.70 0.19 0.12
Matches are distributed among these distances:
16 3 0.03
17 19 0.17
18 73 0.64
19 1 0.01
20 3 0.03
22 15 0.13
ACGTcount: A:0.58, C:0.12, G:0.08, T:0.22
Consensus pattern (18 bp):
AAATCAAAATCAAAATCG
Done.