Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 213 of 240
Found at i:64317856 original size:42 final size:43
Alignment explanation
Indices: 64317783--64317865 Score: 116
Period size: 42 Copynumber: 2.0 Consensus size: 43
64317773 GAATTGAGTA
* *
64317783 CTTCGTTTACTCGATGTCATAGTTCAACTATGGTCTTACACAT
1 CTTCATTTACTCGATGTCATAGTCCAACTATGGTCTTACACAT
*
64317826 CTTCATTTA-TCGATGTCATA-TCCCAGCTATGGTCTTACAC
1 CTTCATTTACTCGATGTCATAGT-CCAACTATGGTCTTACAC
64317866 GAATCACATA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
41 1 0.03
42 27 0.75
43 8 0.22
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.39
Consensus pattern (43 bp):
CTTCATTTACTCGATGTCATAGTCCAACTATGGTCTTACACAT
Found at i:64317942 original size:47 final size:46
Alignment explanation
Indices: 64317836--64317959 Score: 158
Period size: 47 Copynumber: 2.7 Consensus size: 46
64317826 CTTCATTTAT
* * * * *
64317836 CGATGTCATATCCCAGCTATGGTCTTACACGAATCACATATCTCAA
1 CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAA
* * * *
64317882 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAA
64317929 CGATGCCATATCCCAGATATGGTCTTATACG
1 CGATGCCATATCCCAGATATGGTCTTATACG
64317960 GAAATCACTT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
46 27 0.40
47 40 0.60
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAA
Found at i:64318023 original size:31 final size:31
Alignment explanation
Indices: 64317978--64318156 Score: 238
Period size: 31 Copynumber: 5.8 Consensus size: 31
64317968 TTGTCACTTA
*
64317978 TAGCCGAAGCTACCACTATTT-ACTGATCAGG
1 TAGCAGAAGCTACCACT-TTTCACTGATCAGG
* * *
64318009 TAGCTGGAGCTACCATTTTTCACTGATCAGG
1 TAGCAGAAGCTACCACTTTTCACTGATCAGG
* *
64318040 TAGTC-GGAGCTACCATTTTTCACTGATCAGG
1 TAG-CAGAAGCTACCACTTTTCACTGATCAGG
64318071 TAGCAGAAGCTACCACTTTTCACTGATCAGG
1 TAGCAGAAGCTACCACTTTTCACTGATCAGG
*
64318102 TAGCAAAAGCTACCACTTTTCACTGATCAGG
1 TAGCAGAAGCTACCACTTTTCACTGATCAGG
*
64318133 TAGCCGAAAG-TACCACTTTTCACT
1 TAGCAG-AAGCTACCACTTTTCACT
64318157 TGTCATTTGT
Statistics
Matches: 136, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
30 4 0.03
31 128 0.94
32 4 0.03
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (31 bp):
TAGCAGAAGCTACCACTTTTCACTGATCAGG
Found at i:64318230 original size:50 final size:51
Alignment explanation
Indices: 64318132--64318260 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
64318122 CACTGATCAG
* * * *
64318132 GTAGCCGAAAG-TACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCG-AAGCTATCACTTATCACTTGTCACTTATCCTTGATCAGATAAGT
*
64318183 GTAGCCGAAGCTATTACTTATCACTT-TCACTTATCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTATCCTTGATCAGATAAGT
64318233 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
64318261 TGCCATGGTC
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
50 50 0.71
51 20 0.29
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.35
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTATCCTTGATCAGATAAGT
Found at i:64321206 original size:63 final size:63
Alignment explanation
Indices: 64321139--64321258 Score: 168
Period size: 63 Copynumber: 1.9 Consensus size: 63
64321129 CCTGGAAACG
* * * *
64321139 GTGTTAGTACAGGGAATGATTGTGCATGCTGTGGTGCTTGTGTAAAATAAATTGGTGATTATT
1 GTGTTAGTACAGGGAATGAATGTGCATGCTATGGTGCTAGTGTAAAATAAACTGGTGATTATT
* ** *
64321202 GTGTTGGTGTAGGGAATGAATGTGTATGCTATGGTGCTAGTGTAAAATAAACTGGTG
1 GTGTTAGTACAGGGAATGAATGTGCATGCTATGGTGCTAGTGTAAAATAAACTGGTG
64321259 CGTGTTGTGA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
63 49 1.00
ACGTcount: A:0.26, C:0.06, G:0.33, T:0.36
Consensus pattern (63 bp):
GTGTTAGTACAGGGAATGAATGTGCATGCTATGGTGCTAGTGTAAAATAAACTGGTGATTATT
Found at i:64324361 original size:39 final size:39
Alignment explanation
Indices: 64324312--64324391 Score: 133
Period size: 39 Copynumber: 2.1 Consensus size: 39
64324302 ATTTATATTT
* *
64324312 TATTTAGGGTTAAATATAAAATTAGTGCCAAAACTTATA
1 TATTTAGGGTTAAATATAAAACTAGTACCAAAACTTATA
*
64324351 TATTTAGGGTTAAATATAAAACTAGTACCTAAACTTATA
1 TATTTAGGGTTAAATATAAAACTAGTACCAAAACTTATA
64324390 TA
1 TA
64324392 CTTCTTCCAG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.44, C:0.09, G:0.11, T:0.36
Consensus pattern (39 bp):
TATTTAGGGTTAAATATAAAACTAGTACCAAAACTTATA
Found at i:64325822 original size:39 final size:39
Alignment explanation
Indices: 64325778--64325855 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
64325768 TTCAAATCAC
*
64325778 ATTGATTATCTCAAATAAACAGAGGATACTTCATAAATA
1 ATTGATTATCTCAAATAAACAAAGGATACTTCATAAATA
*
64325817 ATTGATTATCTCAAATAAACAAATGATACTTCATAAATA
1 ATTGATTATCTCAAATAAACAAAGGATACTTCATAAATA
64325856 CATAATTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.47, C:0.13, G:0.08, T:0.32
Consensus pattern (39 bp):
ATTGATTATCTCAAATAAACAAAGGATACTTCATAAATA
Found at i:64325843 original size:21 final size:21
Alignment explanation
Indices: 64325780--64325843 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
64325770 CAAATCACAT
*
64325780 TGATTATCTCAAATAAACAGA
1 TGATTATCTCAAATAAACAAA
* * *
64325801 GGA-TA-CTTC--ATAAATAAT
1 TGATTATC-TCAAATAAACAAA
64325819 TGATTATCTCAAATAAACAAA
1 TGATTATCTCAAATAAACAAA
64325840 TGAT
1 TGAT
64325844 ACTTCATAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 10
0.65 0.15 0.21
Matches are distributed among these distances:
18 8 0.26
19 5 0.16
20 5 0.16
21 13 0.42
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.31
Consensus pattern (21 bp):
TGATTATCTCAAATAAACAAA
Found at i:64325864 original size:39 final size:39
Alignment explanation
Indices: 64325782--64325864 Score: 123
Period size: 39 Copynumber: 2.1 Consensus size: 39
64325772 AATCACATTG
* *
64325782 ATTATCTCAAATAAACAGAGGATACTTCATAAATAATTG
1 ATTATCTCAAATAAACAAAGGATACTTCATAAATAATTA
*
64325821 ATTATCTCAAATAAACAAATGATACTTCATAAATACA-TA
1 ATTATCTCAAATAAACAAAGGATACTTCATAAATA-ATTA
64325860 ATTAT
1 ATTAT
64325865 TGCTTAAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
39 39 0.98
40 1 0.03
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.33
Consensus pattern (39 bp):
ATTATCTCAAATAAACAAAGGATACTTCATAAATAATTA
Found at i:64328014 original size:3 final size:3
Alignment explanation
Indices: 64328006--64328040 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
64327996 TTCAATACCT
64328006 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
64328041 CTTATCATTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:64328912 original size:20 final size:20
Alignment explanation
Indices: 64328889--64328935 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
64328879 TATAATTATT
64328889 TAATTAATAAATATCTTTTA
1 TAATTAATAAATATCTTTTA
64328909 TAATCT-ATAAATATCTTTTA
1 TAAT-TAATAAATATCTTTTA
64328929 TAATTAA
1 TAATTAA
64328936 ATACATGTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 1 0.04
20 23 0.92
21 1 0.04
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (20 bp):
TAATTAATAAATATCTTTTA
Found at i:64337931 original size:18 final size:18
Alignment explanation
Indices: 64337908--64337995 Score: 106
Period size: 18 Copynumber: 4.9 Consensus size: 18
64337898 ACTACTGTAC
*
64337908 ACGTGAACAGTACCGTAT
1 ACGTGAATAGTACCGTAT
* *
64337926 ACGTGAATAGTGCCATAT
1 ACGTGAATAGTACCGTAT
***
64337944 ACGTGAATAGTATTATAT
1 ACGTGAATAGTACCGTAT
*
64337962 ACGTGAATAGT-GCGTAT
1 ACGTGAATAGTACCGTAT
64337979 ACGTGAATAGTACCGTA
1 ACGTGAATAGTACCGTA
64337996 AACGGTCGTA
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
17 14 0.24
18 45 0.76
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (18 bp):
ACGTGAATAGTACCGTAT
Found at i:64337963 original size:36 final size:35
Alignment explanation
Indices: 64337923--64337990 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
64337913 AACAGTACCG
64337923 TATACGTGAATAGTGCCATATACGTGAATAGTATTA
1 TATACGTGAATAGTG-CATATACGTGAATAGTATTA
*
64337959 TATACGTGAATAGTGCGTATACGTGAATAGTA
1 TATACGTGAATAGTGCATATACGTGAATAGTA
64337991 CCGTAAACGG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 16 0.52
36 15 0.48
ACGTcount: A:0.35, C:0.10, G:0.22, T:0.32
Consensus pattern (35 bp):
TATACGTGAATAGTGCATATACGTGAATAGTATTA
Found at i:64339884 original size:17 final size:19
Alignment explanation
Indices: 64339852--64339886 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
64339842 ATCCTTTATG
64339852 TTAATTTAGATTTAATAAT
1 TTAATTTAGATTTAATAAT
64339871 TTAA-TTAG-TTTAATAA
1 TTAATTTAGATTTAATAA
64339887 ATCTATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 4 0.25
19 4 0.25
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (19 bp):
TTAATTTAGATTTAATAAT
Found at i:64341414 original size:15 final size:17
Alignment explanation
Indices: 64341380--64341416 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
64341370 CTATCAAATA
*
64341380 TATAATTGATTGTGTTT
1 TATAATTGATTGTCTTT
64341397 TATAATT-ATT-TCTTT
1 TATAATTGATTGTCTTT
64341412 TATAA
1 TATAA
64341417 ATAAAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 9 0.47
16 3 0.16
17 7 0.37
ACGTcount: A:0.30, C:0.03, G:0.08, T:0.59
Consensus pattern (17 bp):
TATAATTGATTGTCTTT
Found at i:64344198 original size:18 final size:18
Alignment explanation
Indices: 64344162--64344200 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
64344152 TTTTAAAATT
*
64344162 AAAGTTAAAATTATTTAA
1 AAAGTTAAAATTATATAA
64344180 AAAGTATAAAATT-TATAA
1 AAAGT-TAAAATTATATAA
64344198 AAA
1 AAA
64344201 TATTTTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (18 bp):
AAAGTTAAAATTATATAA
Found at i:64345721 original size:22 final size:22
Alignment explanation
Indices: 64345670--64345723 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
64345660 ACTTTAATGA
*
64345670 CAATTATATAACTTTAGAAAGT
1 CAATTATATAACTTTAGAAAAT
* **
64345692 TAGGTATATAATCTTT-GAAAAT
1 CAATTATATAA-CTTTAGAAAAT
64345714 CAATTATATA
1 CAATTATATA
64345724 TTGTTTTAAC
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.39
Consensus pattern (22 bp):
CAATTATATAACTTTAGAAAAT
Found at i:64346713 original size:11 final size:11
Alignment explanation
Indices: 64346697--64346727 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
64346687 ATACCCATAC
64346697 CCCATACCTTG
1 CCCATACCTTG
*
64346708 CCCATACCTTT
1 CCCATACCTTG
64346719 CCCATACCT
1 CCCATACCT
64346728 ACCCATACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.19, C:0.48, G:0.03, T:0.29
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:64347300 original size:18 final size:18
Alignment explanation
Indices: 64347273--64347365 Score: 150
Period size: 18 Copynumber: 5.2 Consensus size: 18
64347263 TACGACCGTT
64347273 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
64347291 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
64347309 TACAGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
64347327 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
64347345 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
64347363 TAC
1 TAC
64347366 AGTTGTTGGG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 68 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:64351435 original size:11 final size:11
Alignment explanation
Indices: 64351419--64351449 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
64351409 ATACCCATAC
64351419 CCCATACCTTG
1 CCCATACCTTG
*
64351430 CCCATACCTTT
1 CCCATACCTTG
64351441 CCCATACCT
1 CCCATACCT
64351450 ACCCATACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.19, C:0.48, G:0.03, T:0.29
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:64355047 original size:15 final size:15
Alignment explanation
Indices: 64355027--64355062 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
64355017 AACCTATGAT
64355027 AAATATATATTAACA
1 AAATATATATTAACA
64355042 AAATATATATTAACA
1 AAATATATATTAACA
*
64355057 ACATAT
1 AAATAT
64355063 TTAGGGTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.33
Consensus pattern (15 bp):
AAATATATATTAACA
Found at i:64363984 original size:42 final size:42
Alignment explanation
Indices: 64363902--64364010 Score: 152
Period size: 42 Copynumber: 2.6 Consensus size: 42
64363892 TCTCTTAGAG
*
64363902 ACTTGTAGGCTGAG-TACTACTTTAAACTGCAAAAGTGTGAA
1 ACTTGTAGGCTGAGTTACTACTTTAAACTGCAAAAGCGTGAA
* *
64363943 ACTTGTAGGCTGAGTTTATTA-TTTAGACTGCAAAAGCGTGAA
1 ACTTGTAGGCTGAG-TTACTACTTTAAACTGCAAAAGCGTGAA
*
64363985 ACTTGTAGGCTGAG-TATTACTTTAAA
1 ACTTGTAGGCTGAGTTACTACTTTAAA
64364011 AGTTTAAACT
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
40 5 0.08
41 19 0.31
42 33 0.54
43 4 0.07
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.33
Consensus pattern (42 bp):
ACTTGTAGGCTGAGTTACTACTTTAAACTGCAAAAGCGTGAA
Found at i:64365793 original size:21 final size:20
Alignment explanation
Indices: 64365762--64365803 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
64365752 TATTATACCT
64365762 TTATCATTATTATCATTTTA
1 TTATCATTATTATCATTTTA
*
64365782 TTATCTATTATTATTATTTTA
1 TTATC-ATTATTATCATTTTA
64365803 T
1 T
64365804 CATTATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (20 bp):
TTATCATTATTATCATTTTA
Found at i:64365821 original size:18 final size:18
Alignment explanation
Indices: 64365769--64365810 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
64365759 CCTTTATCAT
*
64365769 TATTATCATT-TTATTATC
1 TATTATTATTATT-TTATC
64365787 TATTATTATTATTTTATC
1 TATTATTATTATTTTATC
64365805 -ATTATT
1 TATTATT
64365811 TATTCATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 6 0.27
18 14 0.64
19 2 0.09
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (18 bp):
TATTATTATTATTTTATC
Found at i:64374502 original size:21 final size:22
Alignment explanation
Indices: 64374477--64374527 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
64374467 CCTTTCCGAT
64374477 ATATGGGTAGGTATGAG-AAAG
1 ATATGGGTAGGTATGAGCAAAG
** *
64374498 ATATGGCAAGGTATGGGCAAAG
1 ATATGGGTAGGTATGAGCAAAG
64374520 A-ATGGGTA
1 ATATGGGTA
64374528 TATTCTAATA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
21 19 0.79
22 5 0.21
ACGTcount: A:0.37, C:0.04, G:0.37, T:0.22
Consensus pattern (22 bp):
ATATGGGTAGGTATGAGCAAAG
Found at i:64375024 original size:18 final size:20
Alignment explanation
Indices: 64375001--64375037 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
64374991 AGACTTACAA
64375001 ATAAAA-AAAT-TATAAAAT
1 ATAAAATAAATATATAAAAT
64375019 ATAAAATAAATATATAAAA
1 ATAAAATAAATATATAAAA
64375038 AATTATATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 4 0.24
20 7 0.41
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (20 bp):
ATAAAATAAATATATAAAAT
Found at i:64375039 original size:15 final size:17
Alignment explanation
Indices: 64375000--64375059 Score: 51
Period size: 15 Copynumber: 3.8 Consensus size: 17
64374990 AAGACTTACA
64375000 AATA-AAAAAATTATAA-
1 AATATAAAAAATTA-AAT
64375016 AATAT--AAAA-TAAAT
1 AATATAAAAAATTAAAT
*
64375030 -ATATAAAAAATTATAT
1 AATATAAAAAATTAAAT
64375046 AATATAAAATAATT
1 AATATAAAA-AATT
64375060 CACAAAACTG
Statistics
Matches: 36, Mismatches: 1, Indels: 12
0.73 0.02 0.24
Matches are distributed among these distances:
13 6 0.17
14 2 0.06
15 8 0.22
16 8 0.22
17 8 0.22
18 4 0.11
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
AATATAAAAAATTAAAT
Found at i:64375044 original size:12 final size:13
Alignment explanation
Indices: 64375012--64375053 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 13
64375002 TAAAAAAATT
64375012 ATAAA-ATATAAA
1 ATAAATATATAAA
64375024 ATAAATATATAAA
1 ATAAATATATAAA
* *
64375037 A-AATTATATAAT
1 ATAAATATATAAA
64375049 ATAAA
1 ATAAA
64375054 ATAATTCACA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
12 15 0.60
13 10 0.40
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
ATAAATATATAAA
Found at i:64385354 original size:213 final size:213
Alignment explanation
Indices: 64384959--64385926 Score: 1483
Period size: 213 Copynumber: 4.6 Consensus size: 213
64384949 AATTTCTCAA
* * * *
64384959 AGTTGTTCAATGTC-AAGCTTCGAAGACCAATAAGATTGTCAATTGAGGATAGTAATTCCTTCAA
1 AGTTGTTCAATCTCAAAACCTC-AAGACCAATAAGATTGTCAATTGAGGATGGTAATTCCTTCAA
*
64385023 AGCTGTTCCGCTTAAATCAAGCTCCCTCAACATCTCCATGGTCTCTAAGATTTCTGGAAAAATCT
65 AGCCGTTCCGCTTAAATCAAGCTCCCTCAACATCTCCATGGTCTCTAAGATTTCTGGAAAAATCT
* * *
64385088 CCAATCTTGAGCAACCTTCAAGATAAAATCTCTCAAGAGATTTCAAATTATAAAGGCTGTCAGGA
130 CCAATCTCGAGCAACCTTCAAGATAAAATCTCTTAAGAGATTTCAATTTATAAAGGCTGTCAGGA
* *
64385153 AGGCAAACAAGATTTTCAC
195 AGGCAAACAAGGTTTTTAC
* * * * *
64385172 AGTTTTTCAATCTCAGATCATCAAGACTAATAAGATTGTCAATTGAGGATGGTAATTCCTTCAAA
1 AGTTGTTCAATCTCAAAACCTCAAGACCAATAAGATTGTCAATTGAGGATGGTAATTCCTTCAAA
**** * *
64385237 GCCGTTCCGCTTAAATCAAGAAAGCTTAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTC
66 GCCGTTCCGCTTAAATCAAGCTCCCTCAACATCTCCATGGTCTCTAAGATTTCTGGAAAAATCTC
* * *
64385302 CAATGTCGAGCAACCTTCAAGATCAAATCTCTTAAGAGATTTCAATTTATAAAGGTTGTCAGGAA
131 CAATCTCGAGCAACCTTCAAGATAAAATCTCTTAAGAGATTTCAATTTATAAAGGCTGTCAGGAA
64385367 GGCAAACAAGGTTTTTAC
196 GGCAAACAAGGTTTTTAC
* * *
64385385 AGTTATT-AATCTCAAAACCTTAAGACCAATAAGATTGTCAATTGGGGATGGTAATTCCTTCAAA
1 AGTTGTTCAATCTCAAAACCTCAAGACCAATAAGATTGTCAATTGAGGATGGTAATTCCTTCAAA
*
64385449 GCCGTTCCGCTTAAATCAAGCT-CCTCAACATATCCATGGTCTCTAAGATTTCTGGAAAAATCTC
66 GCCGTTCCGCTTAAATCAAGCTCCCTCAACATCTCCATGGTCTCTAAGATTTCTGGAAAAATCTC
* * *
64385513 CAATCTCGAGCAACCGTT-AAGATCAAATCTCTTAAGAGATTTCAATTTATAAAGGTTGTTAGGA
131 CAATCTCGAGCAACC-TTCAAGATAAAATCTCTTAAGAGATTTCAATTTATAAAGGCTGTCAGGA
*
64385577 AGGTAAACAAGGTTTTTAC
195 AGGCAAACAAGGTTTTTAC
64385596 AGTTGTTCAATCTCAAAACCTCAAGACCAATAAGATTGTCAATTGAGGATGGTAATTCCTTCAAA
1 AGTTGTTCAATCTCAAAACCTCAAGACCAATAAGATTGTCAATTGAGGATGGTAATTCCTTCAAA
64385661 GCCGTTCCGCTTAAATCAAGCTCCCTCAACATCTCCATGGTCTCTAAGATTTCTGGAAAAATCTC
66 GCCGTTCCGCTTAAATCAAGCTCCCTCAACATCTCCATGGTCTCTAAGATTTCTGGAAAAATCTC
* *
64385726 CAATCTTGAGCAACCTTCAAGATAAAATCTCTTAAGAAATTTCAATTTATAAAGGCTGTCAGGAA
131 CAATCTCGAGCAACCTTCAAGATAAAATCTCTTAAGAGATTTCAATTTATAAAGGCTGTCAGGAA
*
64385791 GGTAAACAAGGTTTTTAC
196 GGCAAACAAGGTTTTTAC
*
64385809 AGTTGTTCAATCTCAAAACCTTAAGACCAATAAGATTGTC-----A--ATGGTAATTCCTTCAAA
1 AGTTGTTCAATCTCAAAACCTCAAGACCAATAAGATTGTCAATTGAGGATGGTAATTCCTTCAAA
* *
64385867 GCTGTTCCTG-TTAAATCAATCTCCCTCAACATCTCCATGGTCTCTAAGATTTCTGGAAAA
66 GCCGTTCC-GCTTAAATCAAGCTCCCTCAACATCTCCATGGTCTCTAAGATTTCTGGAAAA
64385927 CTACACAGAT
Statistics
Matches: 699, Mismatches: 50, Indels: 19
0.91 0.07 0.02
Matches are distributed among these distances:
206 73 0.10
207 1 0.00
208 1 0.00
211 121 0.17
212 152 0.22
213 347 0.50
214 4 0.01
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.30
Consensus pattern (213 bp):
AGTTGTTCAATCTCAAAACCTCAAGACCAATAAGATTGTCAATTGAGGATGGTAATTCCTTCAAA
GCCGTTCCGCTTAAATCAAGCTCCCTCAACATCTCCATGGTCTCTAAGATTTCTGGAAAAATCTC
CAATCTCGAGCAACCTTCAAGATAAAATCTCTTAAGAGATTTCAATTTATAAAGGCTGTCAGGAA
GGCAAACAAGGTTTTTAC
Found at i:64385770 original size:424 final size:425
Alignment explanation
Indices: 64384981--64385926 Score: 1507
Period size: 424 Copynumber: 2.2 Consensus size: 425
64384971 TCAAGCTTCG
*
64384981 AAGACCAATAAGATTGTCAATTGAGGATAGTAATTCCTTCAAAGCTGTTCCGCTTAAATCAAGCT
1 AAGACCAATAAGATTGTCAATTG-GGATGGTAATTCCTTCAAAGCTGTTCCGCTTAAATCAAGCT
*
64385046 CCCTCAACATCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTTGAGCAACCTTCAAGA
65 CCCTCAACATCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAACCTTCAAGA
64385111 TAAAATCTCTCAAGAGATTTCAAATTATAAAGGCTGTCAGGAAGGCAAACAAGATTTTCACAGTT
130 TAAAATCTCTCAAGAGATTTCAAATTATAAAGGCTGTCAGGAAGGCAAACAAGATTTTCACAGTT
* * * *
64385176 TTTCAATCTCAGATCATCAAGACTAATAAGATTGTCAATTGAGGATGGTAATTCCTTCAAAGCCG
195 GTTCAATCTCAAAACATCAAGACCAATAAGATTGTCAATTGAGGATGGTAATTCCTTCAAAGCCG
* * *
64385241 TTCCGCTTAAATCAAGAAAGCTTAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAAT
260 TTCCGCTTAAATCAAGAAACCTCAACATCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAAT
* * * *
64385306 GTCGAGCAACCTTCAAGATCAAATCTCTTAAGAGATTTCAATTTATAAAGGTTGTCAGGAAGGCA
325 CTCGAGCAACCTTCAAGATAAAATCTCTTAAGAAATTTCAATTTATAAAGGCTGTCAGGAAGGCA
64385371 AACAAGGTTTTTACAGTTATT-AATCTCAAAACCTT
390 AACAAGGTTTTTACAGTTATTCAATCTCAAAACCTT
*
64385406 AAGACCAATAAGATTGTCAATTGGGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAATCAAGCT
1 AAGACCAATAAGATTGTCAATT-GGGATGGTAATTCCTTCAAAGCTGTTCCGCTTAAATCAAGCT
*
64385471 -CCTCAACATATCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAACCGTT-AAG
65 CCCTCAACATCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAACC-TTCAAG
* * * * * * * *
64385534 ATCAAATCTCTTAAGAGATTTCAATTTATAAAGGTTGTTAGGAAGGTAAACAAGGTTTTTACAGT
129 ATAAAATCTCTCAAGAGATTTCAAATTATAAAGGCTGTCAGGAAGGCAAACAAGATTTTCACAGT
*
64385599 TGTTCAATCTCAAAACCTCAAGACCAATAAGATTGTCAATTGAGGATGGTAATTCCTTCAAAGCC
194 TGTTCAATCTCAAAACATCAAGACCAATAAGATTGTCAATTGAGGATGGTAATTCCTTCAAAGCC
***
64385664 GTTCCGCTTAAATCAAGCTCCCTCAACATCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAA
259 GTTCCGCTTAAATCAAGAAACCTCAACATCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAA
* *
64385729 TCTTGAGCAACCTTCAAGATAAAATCTCTTAAGAAATTTCAATTTATAAAGGCTGTCAGGAAGGT
324 TCTCGAGCAACCTTCAAGATAAAATCTCTTAAGAAATTTCAATTTATAAAGGCTGTCAGGAAGGC
*
64385794 AAACAAGGTTTTTACAGTTGTTCAATCTCAAAACCTT
389 AAACAAGGTTTTTACAGTTATTCAATCTCAAAACCTT
*
64385831 AAGACCAATAAGATTGTC-A-----ATGGTAATTCCTTCAAAGCTGTTCCTG-TTAAATCAATCT
1 AAGACCAATAAGATTGTCAATTGGGATGGTAATTCCTTCAAAGCTGTTCC-GCTTAAATCAAGCT
64385889 CCCTCAACATCTCCATGGTCTCTAAGATTTCTGGAAAA
65 CCCTCAACATCTCCATGGTCTCTAAGATTTCTGGAAAA
64385927 CTACACAGAT
Statistics
Matches: 483, Mismatches: 33, Indels: 16
0.91 0.06 0.03
Matches are distributed among these distances:
418 35 0.07
419 37 0.08
424 315 0.65
425 95 0.20
426 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (425 bp):
AAGACCAATAAGATTGTCAATTGGGATGGTAATTCCTTCAAAGCTGTTCCGCTTAAATCAAGCTC
CCTCAACATCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAACCTTCAAGAT
AAAATCTCTCAAGAGATTTCAAATTATAAAGGCTGTCAGGAAGGCAAACAAGATTTTCACAGTTG
TTCAATCTCAAAACATCAAGACCAATAAGATTGTCAATTGAGGATGGTAATTCCTTCAAAGCCGT
TCCGCTTAAATCAAGAAACCTCAACATCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATC
TCGAGCAACCTTCAAGATAAAATCTCTTAAGAAATTTCAATTTATAAAGGCTGTCAGGAAGGCAA
ACAAGGTTTTTACAGTTATTCAATCTCAAAACCTT
Found at i:64390709 original size:10 final size:11
Alignment explanation
Indices: 64390675--64390713 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
64390665 CTATCATTGA
64390675 AATTACATTTC
1 AATTACATTTC
*
64390686 AATTACAGTTC
1 AATTACATTTC
64390697 AATTAC-TTTC
1 AATTACATTTC
64390707 AATTACA
1 AATTACA
64390714 CAGTACACAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 9 0.36
11 16 0.64
ACGTcount: A:0.38, C:0.18, G:0.03, T:0.41
Consensus pattern (11 bp):
AATTACATTTC
Found at i:64394655 original size:3 final size:3
Alignment explanation
Indices: 64394570--64394645 Score: 57
Period size: 3 Copynumber: 24.0 Consensus size: 3
64394560 AAGTAAAAAT
* *
64394570 ATA ATA ATA TATAA ATA ATA AT- GTA A-A ATA ATA ATA ATA ATTT ATGA
1 ATA ATA ATA -AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA AT-A
*
64394617 AAA ATA ATA TATA ATAA ATA ATA ATA ATA
1 ATA ATA ATA -ATA AT-A ATA ATA ATA ATA
64394646 TGAAATAATA
Statistics
Matches: 59, Mismatches: 6, Indels: 16
0.73 0.07 0.20
Matches are distributed among these distances:
2 3 0.05
3 42 0.71
4 13 0.22
5 1 0.02
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:64402299 original size:22 final size:22
Alignment explanation
Indices: 64402274--64402315 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
64402264 TTTGAATTTT
*
64402274 GGGTTT-AGAGTTTAGGGTTCAA
1 GGGTTTGAG-GTTAAGGGTTCAA
64402296 GGGTTTGAGGTTAAGGGTTC
1 GGGTTTGAGGTTAAGGGTTC
64402316 GAGTTCAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.19, C:0.05, G:0.40, T:0.36
Consensus pattern (22 bp):
GGGTTTGAGGTTAAGGGTTCAA
Found at i:64405592 original size:3 final size:3
Alignment explanation
Indices: 64405578--64405687 Score: 50
Period size: 3 Copynumber: 37.0 Consensus size: 3
64405568 AAGCTAAAAC
* * *
64405578 TAA TAC TAA TAA TAA TAA AAA TAA -ACA GT-A TAA T-A TAA TAT TAAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A -TAA TAA TAA TAA TAA T-AA
* * * * * * *
64405623 TAA AAA TAA -AGA -AA TAG TAG TAA TAA AAA TAA CAA CAT TAA TAA
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
64405667 TGA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA
64405688 ATGCAGTTAA
Statistics
Matches: 81, Mismatches: 18, Indels: 16
0.70 0.16 0.14
Matches are distributed among these distances:
2 6 0.07
3 73 0.90
4 2 0.02
ACGTcount: A:0.64, C:0.04, G:0.05, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:64410457 original size:12 final size:12
Alignment explanation
Indices: 64410442--64410476 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
64410432 TAATGAGGCA
64410442 AGAAGGAAGCAT
1 AGAAGGAAGCAT
*
64410454 AGAAAGAAGCAT
1 AGAAGGAAGCAT
64410466 AGAAGG-AGCAT
1 AGAAGGAAGCAT
64410477 TAAAGGCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.51, C:0.09, G:0.31, T:0.09
Consensus pattern (12 bp):
AGAAGGAAGCAT
Found at i:64411513 original size:15 final size:15
Alignment explanation
Indices: 64411493--64411522 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
64411483 CTCATCAAGC
64411493 ATTTTATGTGACAGT
1 ATTTTATGTGACAGT
64411508 ATTTTATGTGACAGT
1 ATTTTATGTGACAGT
64411523 TGGTTAGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.07, G:0.20, T:0.47
Consensus pattern (15 bp):
ATTTTATGTGACAGT
Found at i:64412859 original size:21 final size:21
Alignment explanation
Indices: 64412810--64412868 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
64412800 ATAATAAGTC
*
64412810 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
64412830 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
64412852 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
64412869 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:64415065 original size:47 final size:49
Alignment explanation
Indices: 64414988--64415120 Score: 161
Period size: 47 Copynumber: 2.8 Consensus size: 49
64414978 TGTAACCCGC
* *
64414988 CCATAAGTGAACTCGGAATCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG-C-AGTTCACAT
* *
64415038 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA--CATTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTCACAT
*
64415082 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG
64415121 TTCAACCATC
Statistics
Matches: 71, Mismatches: 6, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
43 3 0.04
44 5 0.07
45 1 0.01
46 2 0.03
47 57 0.80
48 2 0.03
49 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTCACAT
Found at i:64415575 original size:30 final size:30
Alignment explanation
Indices: 64415541--64415600 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
64415531 CCTTAATACG
*
64415541 AACTTTGGCAAAATTAC-CATTTTGTCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
64415571 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
64415601 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:64422658 original size:47 final size:47
Alignment explanation
Indices: 64422506--64422679 Score: 187
Period size: 47 Copynumber: 3.7 Consensus size: 47
64422496 TGTAACCCGC
* * * *
64422506 CCATAAGTGAACTCGGATTCAACTCAACGAGCTCGGAC-GTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACAGTTCACAT
*
64422552 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC--A-GAC-AGTTCACAT
* * * *
64422602 -C-TCA-CGAACTCGGACTGAACTCAACGAGTTCAGACATTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACAGTTCACAT
*
64422646 CCATAAGTGAACTCGGACTCAACTCAATGAGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
64422680 GGATGTTCAA
Statistics
Matches: 105, Mismatches: 14, Indels: 17
0.77 0.10 0.12
Matches are distributed among these distances:
43 3 0.03
44 6 0.06
45 2 0.02
46 34 0.32
47 49 0.47
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACAGTTCACAT
Found at i:64422678 original size:94 final size:93
Alignment explanation
Indices: 64422514--64422684 Score: 270
Period size: 94 Copynumber: 1.8 Consensus size: 93
64422504 GCCCATAAGT
* * *
64422514 GAACTCGGATTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
64422579 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
64422607 GAACTCGGACTGAACTCAACGAGTTCAGACATTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCAGAC-GTTCACATCCATAAGTGAACTCGGACTCAACTCA
*
64422672 ATGAGTTCGGATG
65 ACGAGTTCGGATG
64422685 TTCAACCATC
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
93 26 0.37
94 44 0.63
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:64423130 original size:30 final size:30
Alignment explanation
Indices: 64423096--64423154 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
64423086 CCTTAATACG
64423096 AACTTTGGCAAAATTAC-CATTTTACCCCTA
1 AACTTTGGCAAAATTACAC-TTTTACCCCTA
* *
64423126 AACTTTTGCATAATTACACTTTTACCCCT
1 AACTTTGGCAAAATTACACTTTTACCCCT
64423155 TGGCTCAGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.31, C:0.27, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTACCCCTA
Found at i:64428971 original size:20 final size:20
Alignment explanation
Indices: 64428946--64428986 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
64428936 CTAAGGAAAA
64428946 AAATTTTATA-CAATTTTTTT
1 AAATTTTATATC-ATTTTTTT
64428966 AAATTTTATATCATTTTTTT
1 AAATTTTATATCATTTTTTT
64428986 A
1 A
64428987 TTTCAAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 19 0.95
21 1 0.05
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (20 bp):
AAATTTTATATCATTTTTTT
Found at i:64429019 original size:16 final size:16
Alignment explanation
Indices: 64429000--64429031 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
64428990 CAAAAGATAT
64429000 TTAAAAATAAAATTAA
1 TTAAAAATAAAATTAA
*
64429016 TTAAAAATAAAGTTAA
1 TTAAAAATAAAATTAA
64429032 AAGCTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (16 bp):
TTAAAAATAAAATTAA
Found at i:64430575 original size:241 final size:240
Alignment explanation
Indices: 64430153--64430874 Score: 1345
Period size: 241 Copynumber: 3.0 Consensus size: 240
64430143 TATAATCCAT
64430153 GTAGATGCTACGTCAGCATAGTTGACAAACATTAATTTTTTTATCCATTTTAGGATAATTTGATA
1 GTAGATGCTACGTCAGCATAGTTGACAAACATTAATTTTTTTATCCATTTTAGGATAATTTGATA
*
64430218 AAAAATTCAAATTCAATGACAATCCACATCCAAAATAATTATACATATCTTTCTATGCTTCCTAT
66 AAAAATTCAAATTCAATGACAATCCACATCCAAAATAATTATACATCTCTTTCTATGCTTCCTAT
*
64430283 TTGAACAAACATTTTTAACGCTACTATGAAAACCCATTTTCTATAACTGCAATAGTAACTCTTCT
131 TTGAACAAACATTTTTAACGCTACTATGAAAACCCATTTTCTATAACTGCAACAGTAACTCTTCT
64430348 TCTCTCACTCATCTTTACTGTCACTTCCCACTACTCTTCCCATTA
196 TCTCTCACTCATCTTTACTGTCACTTCCCACTACTCTTCCCATTA
* *
64430393 GTAGATGCTATGTCAGCATAGTTGACAAACATTAATTTTTTTTATCCATTTTAGGATAATTTAAT
1 GTAGATGCTACGTCAGCATAGTTGACAAACATTAA-TTTTTTTATCCATTTTAGGATAATTTGAT
* * * *
64430458 AAAAAATTCAAATTTATTGACCATCCACATCCAAAATAATTATACATCTCTTTCTATACTTCCTA
65 AAAAAATTCAAATTCAATGACAATCCACATCCAAAATAATTATACATCTCTTTCTATGCTTCCTA
64430523 TTTGAACAAACATTTTTAACGCTACTATGAAAACCCATTTTCTATAACTGCAACAGTAACTCTTC
130 TTTGAACAAACATTTTTAACGCTACTATGAAAACCCATTTTCTATAACTGCAACAGTAACTCTTC
64430588 TTCTCTCACTCATCTTTACTGTCACTTCCCACTACTCTTCCCATTA
195 TTCTCTCACTCATCTTTACTGTCACTTCCCACTACTCTTCCCATTA
64430634 GTAGATGCTACGTCAGCATAGTTGACAAACATTAATTTTTTTATCCATTTTAGGATAATTTGATA
1 GTAGATGCTACGTCAGCATAGTTGACAAACATTAATTTTTTTATCCATTTTAGGATAATTTGAT-
*
64430699 AAAAAATTCAAATTCAATGACAATCCACATCCAAAATAATTATACATCTCTTTCTTTGCTTCCTA
65 AAAAAATTCAAATTCAATGACAATCCACATCCAAAATAATTATACATCTCTTTCTATGCTTCCTA
64430764 TTTGAACAAACATTTTTAACGCTACTATGAAAACCCATTTTCTATAACTGCAACAGTAACTCTTC
130 TTTGAACAAACATTTTTAACGCTACTATGAAAACCCATTTTCTATAACTGCAACAGTAACTCTTC
64430829 TTCTCTCACTCATCTTTACTGTCACTTCCCACTACTCTTCCCATTA
195 TTCTCTCACTCATCTTTACTGTCACTTCCCACTACTCTTCCCATTA
64430875 CTCTTCTTCC
Statistics
Matches: 465, Mismatches: 15, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
240 62 0.13
241 403 0.87
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (240 bp):
GTAGATGCTACGTCAGCATAGTTGACAAACATTAATTTTTTTATCCATTTTAGGATAATTTGATA
AAAAATTCAAATTCAATGACAATCCACATCCAAAATAATTATACATCTCTTTCTATGCTTCCTAT
TTGAACAAACATTTTTAACGCTACTATGAAAACCCATTTTCTATAACTGCAACAGTAACTCTTCT
TCTCTCACTCATCTTTACTGTCACTTCCCACTACTCTTCCCATTA
Found at i:64435153 original size:25 final size:26
Alignment explanation
Indices: 64435125--64435175 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
64435115 TTTAATTTAA
64435125 TTTAATTTAATTTCAATT-ATTTCAT
1 TTTAATTTAATTTCAATTCATTTCAT
* **
64435150 TTTATTTTTTTTTCAATTCATTTCAT
1 TTTAATTTAATTTCAATTCATTTCAT
64435176 ATTATTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.25, C:0.10, G:0.00, T:0.65
Consensus pattern (26 bp):
TTTAATTTAATTTCAATTCATTTCAT
Found at i:64435171 original size:21 final size:23
Alignment explanation
Indices: 64435145--64435188 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
64435135 TTTCAATTAT
64435145 TTCATTT-TATT-TTTTTTTCAA
1 TTCATTTATATTATTTTTTTCAA
64435166 TTCATTTCATATTATTTTTTTCA
1 TTCATTT-ATATTATTTTTTTCA
64435189 TATTATTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 7 0.35
23 4 0.20
24 9 0.45
ACGTcount: A:0.20, C:0.11, G:0.00, T:0.68
Consensus pattern (23 bp):
TTCATTTATATTATTTTTTTCAA
Found at i:64435183 original size:25 final size:25
Alignment explanation
Indices: 64435135--64435186 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
64435125 TTTAATTTAA
*
64435135 TTTCAATTATTTCATTTTATTTTTT
1 TTTCAATTATTTCATATTATTTTTT
64435160 TTTCAATTCATTTCATATTATTTTTT
1 TTTCAATT-ATTTCATATTATTTTTT
64435186 T
1 T
64435187 CATATTATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.21, C:0.10, G:0.00, T:0.69
Consensus pattern (25 bp):
TTTCAATTATTTCATATTATTTTTT
Found at i:64435216 original size:16 final size:14
Alignment explanation
Indices: 64435170--64435208 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
64435160 TTTCAATTCA
*
64435170 TTTCATATTATTTT
1 TTTCATATTATTAT
64435184 TTTCATATTATTAT
1 TTTCATATTATTAT
*
64435198 TTTCATTTTAT
1 TTTCATATTAT
64435209 ATGATTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTCATATTATTAT
Found at i:64435765 original size:348 final size:345
Alignment explanation
Indices: 64435292--64435986 Score: 1133
Period size: 348 Copynumber: 2.0 Consensus size: 345
64435282 TTAAATACTG
* * *
64435292 GTGCCGGCCATTGACAGGCCAGCACCAAAATTTTTTTTTAAATATTGGTATTTTTGTATATCAGT
1 GTGCCGGCCATTGACAGGCCAGCACCAAAATTTTTTTTTAAATACTGATATTTTTGTATACCAGT
64435357 ATGATCGATTTTTTTAAAAAATATCTTAGTGCCGGCCATTGACAGGCCAAAACTAAAAAAATTAA
66 ATGATCGATTTTTTTAAAAAATATCTTAGTGCCGGCCATTGACAGGCCAAAACTAAAAAAATTAA
*
64435422 CTTTTTAAAGCCTGACACAATCATCAAGCAATCATGGGTGCAAAATACGAGTTGGTGTCGGCCAT
131 CTTTTTAAAGCCTGACACAATCATCAAGCAATCATGGGTGCAAAATACGAGTTGGTGCCGGCCAT
* ** * * *
64435487 TGATAGGCCAAAATTTCATTCCACTGTTCATTTTAGGTCATTTTAGTGATTGTTTTTGAACTTGG
196 TGACAGGCCAAAATCCCATTCCACTGTTCATTTCAGGTCATTTTAGTGATTG-TTTTGAACCTGA
* *
64435552 GTTATTTTTATAAATATCAAAAATTTTTGGACCAATTTAGTAAAATAAGCACCTTCTCTTCTTCC
260 GTCATTTTTATAAATATCAAAAATTTTTAGACCAATTTAGTAAAATAAGCACCTTCTCTTCTTCC
64435617 CCATAGAGGCCACAGTCCACC
325 CCATAGAGGCCACAGTCCACC
* *
64435638 GTGCCGGCCATTGACAGGCCAGCA-CTAATTTTTTTTTTAAATACTGATATTTTTGTATACCAGT
1 GTGCCGGCCATTGACAGGCCAGCACCAAAATTTTTTTTTAAATACTGATATTTTTGTATACCAGT
* *
64435702 ATGATACGATTTTTTTTTAAAAAATA-CATTGGTGCTGGCCATTGACAGGCCAAAACTAAAAAAA
66 ATGAT-CGA--TTTTTTTAAAAAATATC-TTAGTGCCGGCCATTGACAGGCCAAAACTAAAAAAA
* * *
64435766 TTAATTTTTTAAAGCCTGACACAATCATCAAGCAATTATGGGTGTAAAATACGAGTTGGTGCCGG
127 TTAACTTTTTAAAGCCTGACACAATCATCAAGCAATCATGGGTGCAAAATACGAGTTGGTGCCGG
*
64435831 CCATTGACAGGCCAAAATCCCATTCTACTGTTCATTTCAGGTCATTTTAGTGATTGTTTTGAACC
192 CCATTGACAGGCCAAAATCCCATTCCACTGTTCATTTCAGGTCATTTTAGTGATTGTTTTGAACC
* *
64435896 TGAGTCATTTTTATAAATATCAAAATTTTTTAGACCAATTTAGTAAAATAGGCACCTTCTCTTCT
257 TGAGTCATTTTTATAAATATCAAAAATTTTTAGACCAATTTAGTAAAATAAGCACCTTCTCTTCT
64435961 TCCCCATAGAGGCCACAGTCCACC
322 TCCCCATAGAGGCCACAGTCCACC
64435985 GT
1 GT
64435987 CTGGCACTCC
Statistics
Matches: 323, Mismatches: 22, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
345 40 0.12
346 27 0.08
347 95 0.29
348 161 0.50
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (345 bp):
GTGCCGGCCATTGACAGGCCAGCACCAAAATTTTTTTTTAAATACTGATATTTTTGTATACCAGT
ATGATCGATTTTTTTAAAAAATATCTTAGTGCCGGCCATTGACAGGCCAAAACTAAAAAAATTAA
CTTTTTAAAGCCTGACACAATCATCAAGCAATCATGGGTGCAAAATACGAGTTGGTGCCGGCCAT
TGACAGGCCAAAATCCCATTCCACTGTTCATTTCAGGTCATTTTAGTGATTGTTTTGAACCTGAG
TCATTTTTATAAATATCAAAAATTTTTAGACCAATTTAGTAAAATAAGCACCTTCTCTTCTTCCC
CATAGAGGCCACAGTCCACC
Found at i:64436883 original size:2 final size:2
Alignment explanation
Indices: 64436876--64436902 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
64436866 TCTAAATTCG
64436876 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
64436903 GTCAACTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:64438580 original size:14 final size:14
Alignment explanation
Indices: 64438547--64438594 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 14
64438537 GCGAACAAAC
64438547 ATATAAATATAAAT
1 ATATAAATATAAAT
* **
64438561 AAATAAATATTTAT
1 ATATAAATATAAAT
64438575 ATATAAA-ATAAA-
1 ATATAAATATAAAT
64438587 ATATAAAT
1 ATATAAAT
64438595 TGAATAATTT
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
12 7 0.26
13 3 0.11
14 17 0.63
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
ATATAAATATAAAT
Found at i:64441032 original size:30 final size:30
Alignment explanation
Indices: 64440957--64441032 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
64440947 ATGTTGATGA
* *
64440957 TATTTTATAATTATTTAATTAGAAAAATAT
1 TATTTTATTATTATTTAATAAGAAAAATAT
* * **
64440987 TATTTTATTAATATTTAATAAGATATTTAT
1 TATTTTATTATTATTTAATAAGAAAAATAT
64441017 TATTATT-TTATTATTT
1 TATT-TTATTATTATTT
64441033 TATTTAGTAT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
30 36 0.95
31 2 0.05
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (30 bp):
TATTTTATTATTATTTAATAAGAAAAATAT
Found at i:64443356 original size:16 final size:16
Alignment explanation
Indices: 64443335--64443366 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
64443325 TTGAAGGAAC
64443335 TATCTATTCTGATCTA
1 TATCTATTCTGATCTA
64443351 TATCTATTCTGATCTA
1 TATCTATTCTGATCTA
64443367 AATCAACTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.06, T:0.50
Consensus pattern (16 bp):
TATCTATTCTGATCTA
Found at i:64444004 original size:32 final size:32
Alignment explanation
Indices: 64443963--64444027 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
64443953 AAAAAGTAGA
64443963 AGCGTTGCACAGTATTCACTAATAGCTTCTCT
1 AGCGTTGCACAGTATTCACTAATAGCTTCTCT
64443995 AGCGTTGCACAGTATTCACTAATAGCTTCTCT
1 AGCGTTGCACAGTATTCACTAATAGCTTCTCT
64444027 A
1 A
64444028 AGAATTTTCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.34
Consensus pattern (32 bp):
AGCGTTGCACAGTATTCACTAATAGCTTCTCT
Found at i:64446394 original size:17 final size:18
Alignment explanation
Indices: 64446372--64446405 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
64446362 CAAGAATTCG
64446372 AACATAGAAC-CTTAACA
1 AACATAGAACACTTAACA
*
64446389 AACATATAACACTTAAC
1 AACATAGAACACTTAAC
64446406 CGAAGTAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.53, C:0.24, G:0.03, T:0.21
Consensus pattern (18 bp):
AACATAGAACACTTAACA
Found at i:64446680 original size:13 final size:13
Alignment explanation
Indices: 64446662--64446688 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
64446652 TTCAGGTCAC
64446662 TCAATTCTAATAG
1 TCAATTCTAATAG
64446675 TCAATTCTAATAG
1 TCAATTCTAATAG
64446688 T
1 T
64446689 GATGATCCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.41
Consensus pattern (13 bp):
TCAATTCTAATAG
Found at i:64454695 original size:16 final size:16
Alignment explanation
Indices: 64454674--64454744 Score: 83
Period size: 16 Copynumber: 4.4 Consensus size: 16
64454664 GTTTGGTTCA
64454674 TTGTAATGGAATA-AGG
1 TTGTAATGGAATAGA-G
*
64454690 TTGTAATTGAATAG-G
1 TTGTAATGGAATAGAG
* *
64454705 ACTGTAATAGAATAGAG
1 -TTGTAATGGAATAGAG
64454722 TTGTAATGGAATAGAG
1 TTGTAATGGAATAGAG
64454738 TTGTAAT
1 TTGTAAT
64454745 CAGTAATTCA
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
15 1 0.02
16 45 0.96
17 1 0.02
ACGTcount: A:0.38, C:0.01, G:0.27, T:0.34
Consensus pattern (16 bp):
TTGTAATGGAATAGAG
Found at i:64455124 original size:15 final size:16
Alignment explanation
Indices: 64455094--64455128 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
64455084 ATAACTTTAA
*
64455094 AATTTGCATAAAAAAT
1 AATTTGAATAAAAAAT
64455110 AATTTGAAT-AAAAAT
1 AATTTGAATAAAAAAT
64455125 AATT
1 AATT
64455129 CGAGTTCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.57, C:0.03, G:0.06, T:0.34
Consensus pattern (16 bp):
AATTTGAATAAAAAAT
Found at i:64457328 original size:40 final size:40
Alignment explanation
Indices: 64457281--64457361 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
64457271 AAAAAAAAGA
* *
64457281 AAACTAAAACATCCAAGTTCTAACTTCTAACCAAAGAGGC
1 AAACTAAAACATACAAGTTCTAACTTCTAACCAAAAAGGC
*
64457321 AAACTAAAATATACAAGTTCTAACTTCTAACCAAAAAGGC
1 AAACTAAAACATACAAGTTCTAACTTCTAACCAAAAAGGC
64457361 A
1 A
64457362 CCATGCATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.48, C:0.22, G:0.09, T:0.21
Consensus pattern (40 bp):
AAACTAAAACATACAAGTTCTAACTTCTAACCAAAAAGGC
Found at i:64460201 original size:213 final size:213
Alignment explanation
Indices: 64459833--64461345 Score: 2208
Period size: 213 Copynumber: 7.1 Consensus size: 213
64459823 TAAGACATAA
* * * * * *
64459833 AAGAGATTTAAATTTATAAAAGCTGTCAGGAAGGCAGACAATGTTTTCACAGTTTTTAAATCTCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCA
* * *
64459898 ATTCCTTAAGACCAATAAGATTGTCAATTGAGGACGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
66 AATACTTAAGACCAATAAGATTGTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
*
64459963 TCAAGTTCATACAGTTCCTCCATGGTGTTCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACC
131 TCAAGTTCATACAGTTCCTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACC
*
64460028 TTCAAGATTGAATGTCTT
196 TTCAAGATCGAATGTCTT
* * *
64460046 AAGAGATTTCAATTTATAAAAACCGTCACGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCA
* *
64460111 AATACTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAATGCCGTTCCGCTTAAA
66 AATACTTAAGACCAATAAGATTGTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
* * *
64460176 TCAAGGTCATACAGTTCCCCCATGGTGTCCATAACTTCTGGGAAAATCTCCAATCTCGAGCAACC
131 TCAAGTTCATACAGTTCCTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACC
* * *
64460241 -ACAAAGATGGAATGTCAT
196 TTC-AAGATCGAATGTCTT
* * * * * * *
64460259 AAGAGATTTCAATTTATAAAGGTTGTCAGGAAGGCAAATAAAGTTTTCACAGTATTTCAATCTCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCA
* ** * *
64460324 GACCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAA-CTCGTTCTGCTTAA
66 AATACTTAAGACCAATAAGATTGTCAATTGAGGATGGTAATTCCTTCAAAGC-CGTTCCGCTTAA
64460388 ATCAAGTTCATACAGTTCCTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAAC
130 ATCAAGTTCATACAGTTCCTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAAC
64460453 CTTCAAGATCGAATGTCTT
195 CTTCAAGATCGAATGTCTT
*
64460472 AAGAGATTTCAATTTATAAAAGCTATCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCA
* * * * **
64460537 AATACTCAAGACCAATAAGATTGCCAACTGATGATGGTAATTCCTTCAAAGCCGTTCTACTTAAA
66 AATACTTAAGACCAATAAGATTGTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
*
64460602 TCAAGTTCATACAGTTCTTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACC
131 TCAAGTTCATACAGTTCCTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACC
*
64460667 TTCAAGATCGAATGTCTC
196 TTCAAGATCGAATGTCTT
* * ** **
64460685 AAGAGATTTCAATTTATAAAAACTGTCAGGAAGGCAAACAAGGTTTTCACAGTCCTTCAAGCTCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCA
* * *
64460750 AATACTGAAGACCAATAAGATTGTCAATTGAGGATGGTAATTCCTTCAAAGCGGTTCCTCTTAAA
66 AATACTTAAGACCAATAAGATTGTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
* *
64460815 TCGAGTTCATACAGTTCCTCCATAGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACC
131 TCAAGTTCATACAGTTCCTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACC
64460880 TTCAAGATCGAATGTCTT
196 TTCAAGATCGAATGTCTT
* *
64460898 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTGTTACAATTTTTCATTCTCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCA
* *
64460963 AATACTGAAGACCAATAAGATTGTCAATTGAGGATGGTAATTCCTTCAAAGCTGTTCCGCTTAAA
66 AATACTTAAGACCAATAAGATTGTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
* * *
64461028 TCAAGTTCATACAGTTCCTCCATAGTGTCCATGACTTCTGGGAAAATCTCCAATCTCAAGCTACC
131 TCAAGTTCATACAGTTCCTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACC
**
64461093 TTCAAGATCGAACCTCTT
196 TTCAAGATCGAATGTCTT
* * *
64461111 AAGAGATTTCAATTTAGAAAAGCTGTCAGGAAGGCAAACAAGATTTTTATAGTTTTTCATTCTCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCA
* * * * *
64461176 AATACTTAATACCAATAAGGTTGTCAATTGAAGATGGTAATTCCTTCAAAGCTGCTT-CACTTAA
66 AATACTTAAGACCAATAAGATTGTCAATTGAGGATGGTAATTCCTTCAAAGCCG-TTCCGCTTAA
** * ** * ** * *
64461240 ATCAAGAACCGT-CA-ACCTCTCCATGGTGTCCATGATTTCTAAGAAAATCTCCAATCTCAAACA
130 ATCAAG-TTCATACAGTTC-CTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCA
*
64461303 ACCTTCAAGATCGAACGTCTT
193 ACCTTCAAGATCGAATGTCTT
64461324 AAGAGATTTCAATTTATAAAAG
1 AAGAGATTTCAATTTATAAAAG
64461346 TATTGAAGCA
Statistics
Matches: 1178, Mismatches: 115, Indels: 14
0.90 0.09 0.01
Matches are distributed among these distances:
212 3 0.00
213 1169 0.99
214 6 0.01
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (213 bp):
AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCA
AATACTTAAGACCAATAAGATTGTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
TCAAGTTCATACAGTTCCTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACC
TTCAAGATCGAATGTCTT
Found at i:64461391 original size:3 final size:3
Alignment explanation
Indices: 64461383--64461423 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
64461373 ATCACATGTT
64461383 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
64461424 TGGATGTAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:64465760 original size:3 final size:3
Alignment explanation
Indices: 64465752--64465783 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
64465742 ATCACATGTT
64465752 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
64465784 TGGATGTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:64465903 original size:73 final size:73
Alignment explanation
Indices: 64465784--64465969 Score: 363
Period size: 73 Copynumber: 2.5 Consensus size: 73
64465774 TATTATTATT
*
64465784 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
64465849 ATTTTAAG
66 ATTTTAAG
64465857 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
64465922 ATTTTAAG
66 ATTTTAAG
64465930 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
64465970 GTCAAGTTGT
Statistics
Matches: 112, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 112 1.00
ACGTcount: A:0.28, C:0.06, G:0.25, T:0.41
Consensus pattern (73 bp):
TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
ATTTTAAG
Found at i:64469162 original size:213 final size:213
Alignment explanation
Indices: 64466173--64469099 Score: 4148
Period size: 213 Copynumber: 13.7 Consensus size: 213
64466163 AGCTCCAACA
* * * * * * *
64466173 AAAAGCTGTCAGGAAGGCAGACAAGTTTTTTACAATTTTTAAGTCTCAATTTCTTAAGACCAATA
1 AAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCAAATACTTAAGACCAATA
* * ** *
64466238 AGATTGTCAAATGAGGATGGTAATTCCTTCAAAGGTGTTCCGCTTAAATCAAGTTTATACAGTTC
66 AGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAATCAAGTTCATACAGTTC
64466303 CTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACCTTCAAGATCGAATGTCT
131 CTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACCTTCAAGATCGAATGTCT
64466368 TAAGAGATTTCAATTTAT
196 TAAGAGATTTCAATTTAT
* *
64466386 AAAAGCTGTCAGGAAGGCAAACAAGGTTGTTACAGTTTTTCATTCTCAAATACTGAAGACCAATA
1 AAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCAAATACTTAAGACCAATA
**
64466451 AGATTATCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAATCAAGTTCATACAGTTC
66 AGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAATCAAGTTCATACAGTTC
* *
64466516 CTCTATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACCTTCAAGATCGAATATCT
131 CTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACCTTCAAGATCGAATGTCT
* *
64466581 CAAGAGATTTCAAATTAT
196 TAAGAGATTTCAATTTAT
*
64466599 AAAAGCTGTCAGGAAGGCAAACAAGGCTTTTACAGTTTTTCATTCTCAAATA-TTCAAGACCAAT
1 AAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCAAATACTT-AAGACCAAT
* *
64466663 AAGATTGCCAATTGAGGATGGTAATTCCTTAAAAGCCGTTCCGCTTAAATCAAGTTTATACAGTT
65 AAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAATCAAGTTCATACAGTT
* *
64466728 CCTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACC-ACAAAGATGGAATGT
130 CCTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACCTTC-AAGATCGAATGT
64466792 CTTAAGAGATTTCAATTTAT
194 CTTAAGAGATTTCAATTTAT
* * * * * **
64466812 AAAAGCTGTTAGGAATGCAAATAAGGCTTTTACAGTTTTTCAATCTCAAACCCTTAAGACCAATA
1 AAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCAAATACTTAAGACCAATA
* * **
64466877 AGATTTCCAATTGAGGATGGTAATCCCTTCAAAGCCGTTCTACTTAAATCAAGTTCATACAGTTC
66 AGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAATCAAGTTCATACAGTTC
* *
64466942 CTCCATGGTGTCCATGACTTCTGGAAAAATCTCCAGTCTCGAGCAACCTTCAAGATC-AAGTGTC
131 CTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACCTTCAAGATCGAA-TGTC
64467006 TTAAGAGATTTCAATTTAT
195 TTAAGAGATTTCAATTTAT
*
64467025 AAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCAAATATTTAAGACCAATA
1 AAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCAAATACTTAAGACCAATA
* * * * ** * **
64467090 AGATTGCCAATTGAGGATGGTAATTCTTTCAAAGCTGTTCCACTTAAACCAAGAACCGT-CA-AC
66 AGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAATCAAG-TTCATACAGTT
* * * **
64467153 CTCTCCATGGTGTCCATGACTTCTGGAAAAATCTCCAATCTCGAGCAACCTTTAAGATAGAATCC
130 C-CTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACCTTCAAGATCGAATGT
* *
64467218 CTCAAGAGATTTCAACTTAT
194 CTTAAGAGATTTCAATTTAT
64467238 AAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATT-TCCAAATACTTAAGACCAAT
1 AAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCT-CAAATACTTAAGACCAAT
* *
64467302 AAGATTGTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGTTTAAATCAAGCAACTTCA-AC
65 AAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAATCAAG----TTCATAC
* * * * * * *
64467366 --CT-CTCCACGATGTCCATGACTTCTCGAAAAATCTCCAATCTCAAGCAACCTTCAAGATTGAA
126 AGTTCCTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACCTTCAAGATCGAA
* **
64467428 TATCAGAAGAGATTTCAATTTAT
191 TGTCTTAAGAGATTTCAATTTAT
* ** **
64467451 AAAAGCTGTCAGGAAGGCAAACAAGGTTGTTACAGTCCTTCAAGCTCAAATA-TTGAAGACCAAT
1 AAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCAAATACTT-AAGACCAAT
** * * * *
64467515 AAGATTATCAATTGAGGATGGTAATTCCTTCAAAGCTGTTCCACTTAAATCAAGTTTATACAGTC
65 AAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAATCAAGTTCATACAGTT
** **
64467580 CCTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACCTTCAAGATATAAACTC
130 CCTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACCTTCAAGATCGAATGTC
64467645 TTAAGAGATTTCAATTTAT
195 TTAAGAGATTTCAATTTAT
* *
64467664 AAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAATTTTCCATTCTCAAATACTTAAGACCAATA
1 AAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCAAATACTTAAGACCAATA
* *
64467729 AGATTGCCAACTGAGGATGGTAATTCCTTCAAAGCCGTTCTGCTTAAATCAAGTTCATACAGTTC
66 AGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAATCAAGTTCATACAGTTC
* * * * *
64467794 CTTCATAGTGTCCATGACTTCTGGGAAAATCTCTACTCTCGAACAACCTTCAAGATCGAATGTCT
131 CTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACCTTCAAGATCGAATGTCT
*
64467859 TAAGAGCTTTCAATTTAT
196 TAAGAGATTTCAATTTAT
* * *
64467877 AAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAATTTTCCATTCTCAAATACTTAATACCAATA
1 AAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCAAATACTTAAGACCAATA
* * *
64467942 AGATTGCCAACTGAGGATGGTAATTCCTTCAAAGTCGTTCTGCTTAAATCAAGTTCATACAGTTC
66 AGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAATCAAGTTCATACAGTTC
* * * *
64468007 CTTCATAGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAACAACCTTCAAGATTGAATGTCT
131 CTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACCTTCAAGATCGAATGTCT
*
64468072 TAAGAGCTTTCAATTTAT
196 TAAGAGATTTCAATTTAT
* * *
64468090 AAAAGCTGTCAGGAAGGCAAACAAGGTTTCTACAGTATTGCATTCTCAAA-ACCTTAAGACCAAT
1 AAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCAAATA-CTTAAGACCAAT
* * ** *
64468154 AAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTAT-AGCTTAAACCAAGACCCGT-CA-
65 AAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGT-TCCGCTTAAATCAAG-TTCATACAG
* * *
64468216 -ACCTCTTCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCAAGCAACCTTCAAGATTGAA
128 TTCCTC--CATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACCTTCAAGATCGAA
64468280 TGTCTTAAGAGATTTCAATTTAT
191 TGTCTTAAGAGATTTCAATTTAT
* * *
64468303 AAAAACTATCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTAC-CAAATACTCAAGACCAAT
1 AAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATT-CTCAAATACTTAAGACCAAT
*
64468367 AAGATTGCCAATTGA-GAGTGGTAATTCCTTCAAAGCCGTTCCACTTAAA-CTAAGTTCATACAG
65 AAGATTGCCAATTGAGGA-TGGTAATTCCTTCAAAGCCGTTCCGCTTAAATC-AAGTTCATACAG
*
64468430 TTCCTCCATGGTGTCCATGACTTCTGGGAAAATCTCTAATCTCGAGCAACCTTCAAGATCGAATG
128 TTCCTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACCTTCAAGATCGAATG
*
64468495 TCTTAAGAGATTTTAATTTAT
193 TCTTAAGAGATTTCAATTTAT
* *
64468516 AAAAACTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCAAATACTTAATACCAATA
1 AAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCAAATACTTAAGACCAATA
* * *
64468581 AGATTGCCAATTGAGAATGGTAATTCCTTCAAAGCCGTTCCTCTTAAATCAAGTTCATCCAGTTC
66 AGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAATCAAGTTCATACAGTTC
* *
64468646 CTCCATGTTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACCTTCAAGATCGAGTGTCT
131 CTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACCTTCAAGATCGAATGTCT
64468711 TAAGAGATTTCAATTTAT
196 TAAGAGATTTCAATTTAT
* ** * * * * *
64468729 AAAAGTTGTCAGGAAGGCAGGCAAGGTTTTCACAGTTTTTAAGTCTCAATTTCTTAAGACCAATA
1 AAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCAAATACTTAAGACCAATA
** * * * *
64468794 AGATTTTCAAATGAGGATGATAATTCCTTCAAAGCTGTTCCACTTAAATCAAGTTCATACAGTTC
66 AGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAATCAAGTTCATACAGTTC
* *
64468859 CTTCATGGTGTCCATGACTTCTGGGAAAAACTCCAATCTCGAGCAACCTTCAAGATCGAATGTCT
131 CTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACCTTCAAGATCGAATGTCT
64468924 TAAGAGATTTCAATTTAT
196 TAAGAGATTTCAATTTAT
* ** * * * *
64468942 AAAAGCTATCAGGAAGGCAAACAAGGTTTTTACAGTTGGTCATTCTCCAATAGTAAAGACCAGTA
1 AAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCAAATACTTAAGACCAATA
* * *
64469007 AGATTGCCAATTGAGGATGGTAATTCTTTCAAAGCCGTTTCGCTTAAATCAAGTTCATATAGTTC
66 AGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAATCAAGTTCATACAGTTC
* *
64469072 CTCCATGGTGCCCATGATTTCT-GGAAAA
131 CTCCATGGTGTCCATGACTTCTGGGAAAA
64469100 CAACACAGAT
Statistics
Matches: 2435, Mismatches: 243, Indels: 73
0.89 0.09 0.03
Matches are distributed among these distances:
209 3 0.00
210 2 0.00
211 3 0.00
212 22 0.01
213 2382 0.98
214 17 0.01
215 4 0.00
216 2 0.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (213 bp):
AAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTTTTCATTCTCAAATACTTAAGACCAATA
AGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAATCAAGTTCATACAGTTC
CTCCATGGTGTCCATGACTTCTGGGAAAATCTCCAATCTCGAGCAACCTTCAAGATCGAATGTCT
TAAGAGATTTCAATTTAT
Found at i:64469676 original size:14 final size:14
Alignment explanation
Indices: 64469642--64469681 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
64469632 AATTATAAAT
64469642 TAATTATTATTTTA
1 TAATTATTATTTTA
**
64469656 TTGTTATTATTTTA
1 TAATTATTATTTTA
64469670 TAATTA-TATTTT
1 TAATTATTATTTT
64469682 TATTTAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
13 6 0.27
14 16 0.73
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (14 bp):
TAATTATTATTTTA
Found at i:64472838 original size:24 final size:24
Alignment explanation
Indices: 64472811--64472862 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
64472801 TTAGTAAGTC
*
64472811 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
64472835 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
64472859 AAAT
1 AAAT
64472863 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:64474809 original size:24 final size:24
Alignment explanation
Indices: 64474782--64474833 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
64474772 TTAGTAAGTC
*
64474782 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
64474806 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
64474830 AAAT
1 AAAT
64474834 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:64475992 original size:41 final size:40
Alignment explanation
Indices: 64475873--64476005 Score: 167
Period size: 41 Copynumber: 3.3 Consensus size: 40
64475863 GTTTGCAATA
* * * *
64475873 AAACGCAGCAAAAAACAGAGCAATAGCGGTGTTTTTGATCC
1 AAACGCCGCTAAAAACTGAGCAATAGCGGTGTTTTTG-GCC
*
64475914 AAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGGCCC
1 AAACGCCGCTAAAAACTGAGCAATAGCGGTGTTTTTGG-CC
* * **
64475955 AAACGCCGCTAAAAACTGAACAATAGCGGTGCTTTTGGAA
1 AAACGCCGCTAAAAACTGAGCAATAGCGGTGTTTTTGGCC
64475995 AAACGCCGCTA
1 AAACGCCGCTA
64476006 TAGGTCGAGG
Statistics
Matches: 81, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
40 11 0.14
41 70 0.86
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (40 bp):
AAACGCCGCTAAAAACTGAGCAATAGCGGTGTTTTTGGCC
Found at i:64476023 original size:41 final size:41
Alignment explanation
Indices: 64475978--64476113 Score: 211
Period size: 41 Copynumber: 3.3 Consensus size: 41
64475968 AACTGAACAA
*
64475978 TAGCGGTGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
* * * *
64476019 TAGCGGCGCTTCTGGAAAAACGCAGCTATAGGTAGAGGTTG
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
64476060 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCG-GTGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAG-GTTT
64476101 TAGCGGCGCTTTT
1 TAGCGGCGCTTTT
64476114 CTATAGGCCG
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
40 1 0.01
41 84 0.99
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.28
Consensus pattern (41 bp):
TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
Found at i:64476023 original size:82 final size:82
Alignment explanation
Indices: 64475937--64476113 Score: 189
Period size: 82 Copynumber: 2.2 Consensus size: 82
64475927 AACTGAGCAA
* ** * *
64475937 TAGCGGCGTTTTTGGCCCAAACGCCGCTAAAAACT-GA-ACAATAGCGGTGCTTTTGGAAAAACG
1 TAGCGGCGCTTTTGG-AAAAACGCAGCT-AAAACTAGAGACAATAGCGGCGCTTTTGGAAAAACG
64476000 CCGCTATAGGTCGAG-GTTT
64 CCGCTATAGGTCG-GTGTTT
* * ** ****
64476019 TAGCGGCGCTTCTGGAAAAACGCAGCTATAGGTAGAGGTTGTAGCGGCGCTTTTGGAAAAACGCC
1 TAGCGGCGCTTTTGGAAAAACGCAGCTAAAACTAGAGACAATAGCGGCGCTTTTGGAAAAACGCC
64476084 GCTATAGGTCGGTGTTT
66 GCTATAGGTCGGTGTTT
64476101 TAGCGGCGCTTTT
1 TAGCGGCGCTTTT
64476114 CTATAGGCCG
Statistics
Matches: 78, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
80 3 0.04
81 12 0.15
82 63 0.81
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (82 bp):
TAGCGGCGCTTTTGGAAAAACGCAGCTAAAACTAGAGACAATAGCGGCGCTTTTGGAAAAACGCC
GCTATAGGTCGGTGTTT
Found at i:64476118 original size:29 final size:29
Alignment explanation
Indices: 64476085--64476143 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
64476075 AAAAACGCCG
* *
64476085 CTATAGGTCGGTGTTTTAGCGGCGCTTTT
1 CTATAGGCCGATGTTTTAGCGGCGCTTTT
64476114 CTATAGGCCGATGTTTTAGCGGCGCTTTT
1 CTATAGGCCGATGTTTTAGCGGCGCTTTT
64476143 C
1 C
64476144 AAAAAACGCC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.12, C:0.20, G:0.29, T:0.39
Consensus pattern (29 bp):
CTATAGGCCGATGTTTTAGCGGCGCTTTT
Found at i:64476490 original size:18 final size:18
Alignment explanation
Indices: 64476461--64476511 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
64476451 TTGTCCCTTG
64476461 TTATATATATATATTAAAA
1 TTATA-ATATATATTAAAA
* *
64476480 TTCTAATATATATTAAGA
1 TTATAATATATATTAAAA
*
64476498 TTATTATATATATT
1 TTATAATATATATT
64476512 TAGGGTGTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
18 24 0.86
19 4 0.14
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (18 bp):
TTATAATATATATTAAAA
Found at i:64476954 original size:15 final size:15
Alignment explanation
Indices: 64476934--64476965 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
64476924 TTTAATGTAG
*
64476934 AAGATAAATGTATAT
1 AAGATAAATATATAT
64476949 AAGATAAATATATAT
1 AAGATAAATATATAT
64476964 AA
1 AA
64476966 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (15 bp):
AAGATAAATATATAT
Found at i:64481844 original size:24 final size:24
Alignment explanation
Indices: 64481817--64481884 Score: 111
Period size: 24 Copynumber: 2.8 Consensus size: 24
64481807 ATTATTATTG
*
64481817 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
64481841 AAATATTATTC-TCCGTTTTATCAC
1 AAATATTA-TCGTCCGTTTTATCAC
64481865 AAATATTATCGTCCGTTTTA
1 AAATATTATCGTCCGTTTTA
64481885 CCATTTAAGT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
23 2 0.05
24 37 0.90
25 2 0.05
ACGTcount: A:0.28, C:0.21, G:0.07, T:0.44
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:64482105 original size:15 final size:15
Alignment explanation
Indices: 64482061--64482116 Score: 71
Period size: 15 Copynumber: 3.8 Consensus size: 15
64482051 AACGACATGT
64482061 ATATTATTTAATTAA
1 ATATTATTTAATTAA
* *
64482076 A-ATAATTT-TTCTAA
1 ATATTATTTAAT-TAA
64482090 ATATTATTTAATTAA
1 ATATTATTTAATTAA
64482105 ATATTATTTAAT
1 ATATTATTTAAT
64482117 CCCGCTACTT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
13 1 0.03
14 10 0.29
15 22 0.65
16 1 0.03
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:64482233 original size:9 final size:9
Alignment explanation
Indices: 64482221--64482446 Score: 134
Period size: 9 Copynumber: 24.6 Consensus size: 9
64482211 TATTTGATAT
*
64482221 CATAATTTA
1 CATAACTTA
64482230 CATAACTTA
1 CATAACTTA
** *
64482239 TGTAACATA
1 CATAACTTA
*
64482248 TATAACTTA
1 CATAACTTA
64482257 CATAACTTA
1 CATAACTTA
* *
64482266 TATAACATA
1 CATAACTTA
64482275 CATAACTTA
1 CATAACTTA
*
64482284 TATAACTTA
1 CATAACTTA
*
64482293 TATAACTTA
1 CATAACTTA
* *
64482302 GATAA-ATA
1 CATAACTTA
*
64482310 TATAACTTA
1 CATAACTTA
64482319 CATAACTTA
1 CATAACTTA
64482328 CATAATACTTA
1 CAT-A-ACTTA
* *
64482339 AATATATTTTATA
1 CATA-A--CT-TA
*
64482352 TCATAATTTA
1 -CATAACTTA
64482362 CATAACTTA
1 CATAACTTA
64482371 CATAACTTA
1 CATAACTTA
*
64482380 TATAACTTA
1 CATAACTTA
* *
64482389 GATAA-ATA
1 CATAACTTA
* *
64482397 TATAATTTA
1 CATAACTTA
*
64482406 CATAA-ATA
1 CATAACTTA
* * *
64482414 TATATCATA
1 CATAACTTA
*
64482423 TCATAAATTA
1 -CATAACTTA
64482433 CATAACTTA
1 CATAACTTA
64482442 CATAA
1 CATAA
64482447 TACTTAAATA
Statistics
Matches: 172, Mismatches: 35, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
8 17 0.10
9 128 0.74
10 11 0.06
11 9 0.05
12 1 0.01
13 3 0.02
14 3 0.02
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:64482254 original size:18 final size:18
Alignment explanation
Indices: 64482221--64482446 Score: 152
Period size: 18 Copynumber: 12.3 Consensus size: 18
64482211 TATTTGATAT
* *
64482221 CATAATTTACATAACTTA
1 CATAACTTATATAACTTA
** *
64482239 TGTAACATATATAACTTA
1 CATAACTTATATAACTTA
*
64482257 CATAACTTATATAACATA
1 CATAACTTATATAACTTA
64482275 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
64482293 TATAACTTAGATAA-ATA
1 CATAACTTATATAACTTA
* *
64482310 TATAACTTACATAACTTA
1 CATAACTTATATAACTTA
**
64482328 CATAATACTTAAATATATTTTATA
1 CAT-A-ACTT--ATATA-ACT-TA
* *
64482352 TCATAATTTACATAACTTA
1 -CATAACTTATATAACTTA
64482371 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
64482389 GATAA-ATATATAATTTA
1 CATAACTTATATAACTTA
* * *
64482406 CATAA-ATATATATCATA
1 CATAACTTATATAACTTA
* *
64482423 TCATAAATTACATAACTTA
1 -CATAACTTATATAACTTA
64482442 CATAA
1 CATAA
64482447 TACTTAAATA
Statistics
Matches: 162, Mismatches: 36, Indels: 20
0.74 0.17 0.09
Matches are distributed among these distances:
17 38 0.23
18 90 0.56
19 11 0.07
20 5 0.03
21 4 0.02
22 4 0.02
23 4 0.02
24 3 0.02
25 3 0.02
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.38
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:64482449 original size:114 final size:114
Alignment explanation
Indices: 64482249--64482470 Score: 313
Period size: 114 Copynumber: 1.9 Consensus size: 114
64482239 TGTAACATAT
* * *
64482249 ATAACTTACATAACTTATATAACATACATAACTTATATAACTTATATAACTTAGATAAATATATA
1 ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATAAATATATA
* * *
64482314 ACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTAC
66 AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
* * * * *
64482363 ATAACTTACATAACTTATATAACTTAGATAA-ATATATAATTTACATAAA-TATATATCATATCA
1 ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATA-AATAT-A
64482426 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATA
64 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATA
64482471 TATAACTAGT
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
112 5 0.05
113 18 0.19
114 72 0.76
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.39
Consensus pattern (114 bp):
ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATAAATATATA
AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
Found at i:64487670 original size:13 final size:14
Alignment explanation
Indices: 64487654--64487682 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
64487644 TTCTAAATAT
64487654 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
64487667 TTATAATTGTTTAA
1 TTATAATTGTTTAA
64487681 TT
1 TT
64487683 CAATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:64488119 original size:21 final size:21
Alignment explanation
Indices: 64488094--64488134 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
64488084 TTAGAGTGGA
64488094 GGCAGCAGAGAGGGAGGCAGC
1 GGCAGCAGAGAGGGAGGCAGC
*
64488115 GGCAGCAGCGAGGGAGGCAG
1 GGCAGCAGAGAGGGAGGCAG
64488135 AGCATAGGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.20, G:0.54, T:0.00
Consensus pattern (21 bp):
GGCAGCAGAGAGGGAGGCAGC
Found at i:64488605 original size:42 final size:43
Alignment explanation
Indices: 64488507--64488633 Score: 202
Period size: 42 Copynumber: 3.0 Consensus size: 43
64488497 GTTTGTGGAA
*
64488507 AAAACGCCGCTAAAGGTCATGACTTTTAGCGGCGCTTTTTTTC
1 AAAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTC
* * *
64488550 CAAACGCCACTAAAGGCCATGACTTTTAGCGGTGCTTTTTTT-
1 AAAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTC
*
64488592 AAAACGCCGCTAAAGGCCATGACTTTTAGTGGCGCTTTTTTT
1 AAAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTT
64488634 TAATAAACAC
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
42 38 0.50
43 38 0.50
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (43 bp):
AAAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTC
Found at i:64493604 original size:63 final size:63
Alignment explanation
Indices: 64493526--64493653 Score: 256
Period size: 63 Copynumber: 2.0 Consensus size: 63
64493516 TGATTAAAGA
64493526 AGCCAGGAAAATCATGCTGGAACACAGAAGGATGAACTTGGAGCAGGAGGCAAGACGCAAACC
1 AGCCAGGAAAATCATGCTGGAACACAGAAGGATGAACTTGGAGCAGGAGGCAAGACGCAAACC
64493589 AGCCAGGAAAATCATGCTGGAACACAGAAGGATGAACTTGGAGCAGGAGGCAAGACGCAAACC
1 AGCCAGGAAAATCATGCTGGAACACAGAAGGATGAACTTGGAGCAGGAGGCAAGACGCAAACC
64493652 AG
1 AG
64493654 GTGACATCCG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.40, C:0.20, G:0.30, T:0.09
Consensus pattern (63 bp):
AGCCAGGAAAATCATGCTGGAACACAGAAGGATGAACTTGGAGCAGGAGGCAAGACGCAAACC
Found at i:64497978 original size:41 final size:41
Alignment explanation
Indices: 64497921--64498003 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
64497911 TCCCAAAAAG
64497921 AATGGTTCTCAACAGTGGAAACATGAACAGTACATGTGTGT
1 AATGGTTCTCAACAGTGGAAACATGAACAGTACATGTGTGT
64497962 AATGGTTCTCAACAGTGGAAACATGAACAGTACATGTGTGT
1 AATGGTTCTCAACAGTGGAAACATGAACAGTACATGTGTGT
64498003 A
1 A
64498004 GCCTTAGTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (41 bp):
AATGGTTCTCAACAGTGGAAACATGAACAGTACATGTGTGT
Found at i:64499256 original size:49 final size:49
Alignment explanation
Indices: 64499189--64499288 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
64499179 AGAAGCACTT
64499189 CTCAAAAGAAAGAAACAATAGAATTAGATTGTGAGAAAACTGGCCTCAA
1 CTCAAAAGAAAGAAACAATAGAATTAGATTGTGAGAAAACTGGCCTCAA
64499238 CTCAAAAGAAAGAAACAATAGAATTAGATTGTGAGAAAACTGGCCTCAA
1 CTCAAAAGAAAGAAACAATAGAATTAGATTGTGAGAAAACTGGCCTCAA
64499287 CT
1 CT
64499289 GCACAAGTAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (49 bp):
CTCAAAAGAAAGAAACAATAGAATTAGATTGTGAGAAAACTGGCCTCAA
Found at i:64509499 original size:3 final size:3
Alignment explanation
Indices: 64509493--64509518 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
64509483 ATTATTAGTC
64509493 TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TC
64509519 CCCTTATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:64510731 original size:18 final size:18
Alignment explanation
Indices: 64510704--64510750 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
64510694 CCATGCTATA
*
64510704 GATTCTAGTGATTCTGAT
1 GATTCAAGTGATTCTGAT
64510722 GATTCAAGTGATTCTGAT
1 GATTCAAGTGATTCTGAT
*
64510740 GAATCAAGTGA
1 GATTCAAGTGA
64510751 GGGAGAGTGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.36
Consensus pattern (18 bp):
GATTCAAGTGATTCTGAT
Found at i:64517510 original size:75 final size:75
Alignment explanation
Indices: 64517427--64517577 Score: 241
Period size: 75 Copynumber: 2.0 Consensus size: 75
64517417 TTATACCCTT
*
64517427 TGGCTCTCCACCTCGATTAGGTGAACCGTCTTCCTTAACAACCATTATGCTTT-TATCCTTATCT
1 TGGCTCTCCACCTCGATTAGGTGAACCGTCTTCCTTAACAACCACTATGCTTTCT-TCCTTATCT
*
64517491 CCTTATCAGTG
65 CCTCATCAGTG
* *
64517502 TGGCTCTCCACCTCGATTAGGTGAACCGTCTTCTTTGACAACCACTATGCTTTCTTCCTTATCTC
1 TGGCTCTCCACCTCGATTAGGTGAACCGTCTTCCTTAACAACCACTATGCTTTCTTCCTTATCTC
*
64517567 CTCATTAGTG
66 CTCATCAGTG
64517577 T
1 T
64517578 ATCAACAAAT
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
75 69 0.99
76 1 0.01
ACGTcount: A:0.19, C:0.30, G:0.14, T:0.38
Consensus pattern (75 bp):
TGGCTCTCCACCTCGATTAGGTGAACCGTCTTCCTTAACAACCACTATGCTTTCTTCCTTATCTC
CTCATCAGTG
Found at i:64522531 original size:77 final size:71
Alignment explanation
Indices: 64522402--64522560 Score: 203
Period size: 77 Copynumber: 2.2 Consensus size: 71
64522392 TGAGGGAGCC
*
64522402 GAGAGGAATGAAGAAAAATGGTGAAAAAGCCCCCTTTTCTCTTTCTGTTTTTGCTGTTTAATGGT
1 GAGAGGAATGAAGAAAAATGGTGAAAAAGCCCCCTTTTCTCTTTCTATTTTTGCTGTTTAATGG-
*
64522467 GGCATGT
65 CGCATGT
* *
64522474 GAGAGGGATGAAG-AAAATGGTGAAAAAGCCCCCCCACCTTTTTCTCTTTCTATTTTTGGTGTTT
1 GAGAGGAATGAAGAAAAATGGTGAAAAAG----CCC-CC-TTTTCTCTTTCTATTTTTGCTGTTT
64522538 AATGGCGCATGT
60 AATGGCGCATGT
*
64522550 GAGAGCAATGA
1 GAGAGGAATGA
64522561 CAAAAGAAAA
Statistics
Matches: 75, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
71 15 0.20
72 12 0.16
75 3 0.04
76 17 0.23
77 28 0.37
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (71 bp):
GAGAGGAATGAAGAAAAATGGTGAAAAAGCCCCCTTTTCTCTTTCTATTTTTGCTGTTTAATGGC
GCATGT
Found at i:64527270 original size:44 final size:42
Alignment explanation
Indices: 64527203--64527327 Score: 126
Period size: 42 Copynumber: 2.9 Consensus size: 42
64527193 TTCGATATGT
* * ** *
64527203 GATTTCTTGTAAGACTACATCTGGGACACTGGCATCGATTTAA
1 GATTTCGTGTAAGACCATGTCTGGGACA-TGACATCGATTTAA
* **
64527246 GATTTACGTGTAAGACCATGTCTGGGACATCAACATC-ATTTTT
1 GATTT-CGTGTAAGACCATGTCTGGGACAT-GACATCGATTTAA
*
64527289 GATTTCGTGTAAGACCCTGTCTGGGACAGTGACATCGAT
1 GATTTCGTGTAAGACCATGTCTGGGACA-TGACATCGAT
64527328 ATTTGATTAC
Statistics
Matches: 68, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
42 27 0.40
43 18 0.26
44 23 0.34
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.32
Consensus pattern (42 bp):
GATTTCGTGTAAGACCATGTCTGGGACATGACATCGATTTAA
Found at i:64527324 original size:42 final size:43
Alignment explanation
Indices: 64527222--64527358 Score: 136
Period size: 43 Copynumber: 3.2 Consensus size: 43
64527212 TAAGACTACA
* **
64527222 TCTGGGACACTGGCATCGATTTAAGATTTACGTGTAAGACCATG
1 TCTGGGACA-TGACATCGATTTTTGATTTACGTGTAAGACCATG
* *
64527266 TCTGGGACATCAACATC-ATTTTTGATTT-CGTGTAAGACCCTG
1 TCTGGGACAT-GACATCGATTTTTGATTTACGTGTAAGACCATG
* * * *
64527308 TCTGGGACAGTGACATCGATATTTGA-TTACATATAAGACCACG
1 TCTGGGACA-TGACATCGATTTTTGATTTACGTGTAAGACCATG
*
64527351 TTTGGGAC
1 TCTGGGAC
64527359 GTTAGCATTG
Statistics
Matches: 77, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
42 29 0.38
43 35 0.45
44 13 0.17
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (43 bp):
TCTGGGACATGACATCGATTTTTGATTTACGTGTAAGACCATG
Found at i:64528599 original size:35 final size:38
Alignment explanation
Indices: 64528510--64528599 Score: 91
Period size: 35 Copynumber: 2.4 Consensus size: 38
64528500 GGGATTTAAA
64528510 AATATATATACATAAATAATAATAAGTAAAGAATAAATAT
1 AATATA-ATA-ATAAATAATAATAAGTAAAGAATAAATAT
*
64528550 AGTGGA-AATAATAAAT-ATAA-AAGTAAA-AA-AAATAT
1 AAT--ATAATAATAAATAATAATAAGTAAAGAATAAATAT
64528585 AATATAATATATAAA
1 AATATAATA-ATAAA
64528600 CAAAATTAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 13
0.75 0.03 0.22
Matches are distributed among these distances:
33 1 0.02
34 4 0.09
35 13 0.30
36 2 0.05
37 7 0.16
38 4 0.09
39 6 0.14
40 5 0.11
41 1 0.02
42 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.07, T:0.28
Consensus pattern (38 bp):
AATATAATAATAAATAATAATAAGTAAAGAATAAATAT
Found at i:64531138 original size:25 final size:26
Alignment explanation
Indices: 64531070--64531139 Score: 83
Period size: 25 Copynumber: 2.8 Consensus size: 26
64531060 CAGAATAGAG
*
64531070 CAGAACAGGACAGAGC-AGAACATAT
1 CAGAACAGGACAGAACTAGAACATAT
* * *
64531095 TAGAACAAGACAGGA-TAGAACATAT
1 CAGAACAGGACAGAACTAGAACATAT
64531120 CAGAACAGGACA-AACTAGAA
1 CAGAACAGGACAGAACTAGAA
64531140 TATAATAGAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
24 1 0.03
25 35 0.97
ACGTcount: A:0.51, C:0.17, G:0.21, T:0.10
Consensus pattern (26 bp):
CAGAACAGGACAGAACTAGAACATAT
Found at i:64533331 original size:37 final size:37
Alignment explanation
Indices: 64533289--64533436 Score: 251
Period size: 37 Copynumber: 4.0 Consensus size: 37
64533279 TAGTTTTAGC
*
64533289 TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGAGACAAAGTGATAAGTGGT
*
64533326 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGAGACAAAGTGATAAGTGGT
*
64533363 TACACTTATCTGATCAAGAGACAAAGTGATAAGTGGC
1 TACACTTATCTGATCAAGAGACAAAGTGATAAGTGGT
* *
64533400 TACACTTATCTGATCAAGTGATAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGAGACAAAGTGATAAGTGGT
64533437 AGCTTTAGCT
Statistics
Matches: 104, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (37 bp):
TACACTTATCTGATCAAGAGACAAAGTGATAAGTGGT
Found at i:64533507 original size:45 final size:46
Alignment explanation
Indices: 64533398--64533521 Score: 182
Period size: 46 Copynumber: 2.8 Consensus size: 46
64533388 GTGATAAGTG
* *
64533398 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTCTA
* *
64533444 GCTACACTTATATGATCAAGTGGCAAAGTGATAAGTGGTAGC-CTA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTCTA
*
64533489 GCTACACTTATCTAATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
64533522 AGGTCATATG
Statistics
Matches: 71, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 20 0.28
46 39 0.55
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTCTA
Found at i:64537403 original size:107 final size:107
Alignment explanation
Indices: 64537263--64537472 Score: 323
Period size: 107 Copynumber: 2.0 Consensus size: 107
64537253 GACTTAAAAA
* *
64537263 AAAATTTTGGTTGAATAAAATTCTATCACTAAACAAAATCTAACTCAAAACTTTTATAATTCTAA
1 AAAATTTTGATTGAATAAAATTCTATCACTAAACAAAATCTAACTCAAAACTTTTAAAATTCTAA
*
64537328 TTAACTAAGACCTATCAATTGAAAAAAAATTGAATTAAAATTT
66 TTAACTAAGACCTACCAATTG-AAAAAAATTGAATTAAAATTT
* * *
64537371 AAAA-TTTGATTGAATAAAATTCTTTTATTAAACAAAATCTAACTCAAAACTTTTAAAATTCTAA
1 AAAATTTTGATTGAATAAAATTCTATCACTAAACAAAATCTAACTCAAAACTTTTAAAATTCTAA
* * *
64537435 TTAACTTAGACCTGCCAATTGAAAAACATTGAATTAAA
66 TTAACTAAGACCTACCAATTGAAAAAAATTGAATTAAA
64537473 TTTTTGTGTG
Statistics
Matches: 93, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
106 16 0.17
107 73 0.78
108 4 0.04
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.34
Consensus pattern (107 bp):
AAAATTTTGATTGAATAAAATTCTATCACTAAACAAAATCTAACTCAAAACTTTTAAAATTCTAA
TTAACTAAGACCTACCAATTGAAAAAAATTGAATTAAAATTT
Found at i:64539282 original size:20 final size:21
Alignment explanation
Indices: 64539246--64539285 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
64539236 AAATGCCTAT
64539246 GAAAAGATGGCTTGGATTTAA
1 GAAAAGATGGCTTGGATTTAA
*
64539267 GAAAAGTTGG-TTGGATTTA
1 GAAAAGATGGCTTGGATTTA
64539286 TCAATGATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.35, C:0.03, G:0.30, T:0.33
Consensus pattern (21 bp):
GAAAAGATGGCTTGGATTTAA
Found at i:64542008 original size:11 final size:11
Alignment explanation
Indices: 64541992--64542036 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
64541982 CAATCTTCAA
64541992 TCTTTC-AATAT
1 TCTTTCAAAT-T
64542003 TCTTTCAAATT
1 TCTTTCAAATT
64542014 TCTTTCAAA--
1 TCTTTCAAATT
*
64542023 TCTCTCAAATT
1 TCTTTCAAATT
64542034 TCT
1 TCT
64542037 CTTAAATTCC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
9 8 0.27
11 19 0.63
12 3 0.10
ACGTcount: A:0.27, C:0.22, G:0.00, T:0.51
Consensus pattern (11 bp):
TCTTTCAAATT
Found at i:64542037 original size:11 final size:11
Alignment explanation
Indices: 64542002--64542053 Score: 54
Period size: 11 Copynumber: 4.9 Consensus size: 11
64541992 TCTTTCAATA
*
64542002 TTCTTTCAAAT
1 TTCTCTCAAAT
*
64542013 TTCTTTCAAA-
1 TTCTCTCAAAT
64542023 -TCTCTCAAAT
1 TTCTCTCAAAT
*
64542033 TTCTCTTAAAT
1 TTCTCTCAAAT
*
64542044 TCCTCTCAAA
1 TTCTCTCAAA
64542054 AATCTCGTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
9 8 0.23
11 27 0.77
ACGTcount: A:0.29, C:0.25, G:0.00, T:0.46
Consensus pattern (11 bp):
TTCTCTCAAAT
Found at i:64542039 original size:22 final size:22
Alignment explanation
Indices: 64541992--64542053 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 22
64541982 CAATCTTCAA
*
64541992 TCTTTCAATATTCTTTCAAATT
1 TCTTTCAATATTCTCTCAAATT
64542014 TCTTTCAA-A-TCTCTCAAATT
1 TCTTTCAATATTCTCTCAAATT
64542034 TCTCTT-AA-ATTCCTCTCAAA
1 TCT-TTCAATATT-CTCTCAAA
64542054 AATCTCGTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
20 16 0.44
21 4 0.11
22 16 0.44
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.47
Consensus pattern (22 bp):
TCTTTCAATATTCTCTCAAATT
Found at i:64542109 original size:16 final size:15
Alignment explanation
Indices: 64542080--64542110 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
64542070 TCAAAAAAGC
*
64542080 TCTAATTTTATTTTT
1 TCTAAATTTATTTTT
64542095 TCTAAATTTATTTTT
1 TCTAAATTTATTTTT
64542110 T
1 T
64542111 AAAATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (15 bp):
TCTAAATTTATTTTT
Found at i:64543877 original size:17 final size:18
Alignment explanation
Indices: 64543845--64543884 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
64543835 TGATGCCAGG
*
64543845 TATGTATCTGAGCCCTTT
1 TATGTATCTGAGCCCTTA
64543863 TATGTATCT-AGCCCTTA
1 TATGTATCTGAGCCCTTA
64543880 TATGT
1 TATGT
64543885 TTCCTTTATC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.45
Consensus pattern (18 bp):
TATGTATCTGAGCCCTTA
Found at i:64544478 original size:116 final size:116
Alignment explanation
Indices: 64544274--64544772 Score: 899
Period size: 116 Copynumber: 4.3 Consensus size: 116
64544264 TATTTGTACA
*
64544274 AACATTTTGAATATTTTTATATTATTTCATATAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
64544339 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAAGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAAGC
64544390 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
* *
64544455 TGTAATTTACTTTTATATTTTTAATAAAATAGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAAGC
64544506 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
* *
64544571 TGTAATTTACTTTTATATTTTTAATACAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAAGC
* * *
64544622 AACATTTTGAATATTTTTATATTATTTCATGTGATAATATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
* *
64544687 TATAATTTACTTTTATATTTTTAATAAAATGAAAATTATTTTAAATAAAGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAAGC
*
64544738 AATATTTTGAATATTTTTATATTATTTCATGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAAT
64544773 AAAATATAAA
Statistics
Matches: 369, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
116 369 1.00
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (116 bp):
AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAAGC
Found at i:64548314 original size:126 final size:126
Alignment explanation
Indices: 64547769--64548306 Score: 816
Period size: 126 Copynumber: 4.3 Consensus size: 126
64547759 GCCCAAGTTA
* *
64547769 TTTCAGAAACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGA-AA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA
*
64547833 TGCATCCTGCTTGAAGCGTTTTTGACACTATTT-ATGCAGACACGTCTTTTCAAAATTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGA-GCAGACACGTCTTCTCAAAATTATTT
* * * * * * *
64547894 TTTCAGAGACCACTGTAGCAAAAGAGCATCCACATGGGAGCTTCTTCCAGTAATTTTGCTAAAAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA
*
64547959 TGCATCCTGCTTGAAGCGTTTTT-ACCACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGA-CACTATTTGAGCAGACACGTCTTCTCAAAATTATTT
* * *
64548020 TTTCAGAGACTACTGTAGCAAAAGAGCGTCTACGTGGAAGCTTCTTTCAATACTTTTGCTGACAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA
* *
64548085 TGCATCCTGCTTGAAGCTTTTTTTACACTATTTGCA-CAGACACGTCTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTG-AGCAGACACGTCTTCTCAAAATTATTT
* * *
64548146 TTTCAGATACTACTGTAGCAAAAGAGCGTCCAGGTGGGAGCTTCTTTCAGTACTTTTACTGACAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA
64548211 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGAGCAGACACGTCTTCTC-AAATTAATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGAGCAGACACGTCTTCTCAAAATT-ATTT
* *
64548272 TTTCAGAGACTACTGTAACACAAGAGCGTCCACGT
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGT
64548307 AGAAGCTTTT
Statistics
Matches: 374, Mismatches: 32, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
125 63 0.17
126 310 0.83
127 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (126 bp):
TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA
TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGAGCAGACACGTCTTCTCAAAATTATTT
Found at i:64548545 original size:96 final size:98
Alignment explanation
Indices: 64548416--64548591 Score: 241
Period size: 96 Copynumber: 1.8 Consensus size: 98
64548406 CCTAAAATCC
* * ** * * *
64548416 TAATATAATTTTTTTAAAATTTATAATTAATTTACTCAAGTAACCCTACACCCTAATTTATTTGA
1 TAATATAATTTTTTTAAAATTTATAAATAATTTAATCAACAAACACTAAACCCTAATTTATTTAA
64548481 -TTTTTTCCTTAAAAACCATCAACACTAAACCA
66 TTTTTTTCCTTAAAAACCATCAACACTAAACCA
* *
64548513 TAATATAA-TTTTTTAAAA-TTAGTAAATAATTTAATTAACAAATACTAAACCCTAATTTATTTA
1 TAATATAATTTTTTTAAAATTTA-TAAATAATTTAATCAACAAACACTAAACCCTAATTTATTTA
64548576 ATTTTTTTCCTTAAAA
65 ATTTTTTTCCTTAAAA
64548592 CCTTAAAATT
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
95 3 0.04
96 43 0.63
97 22 0.32
ACGTcount: A:0.41, C:0.14, G:0.02, T:0.43
Consensus pattern (98 bp):
TAATATAATTTTTTTAAAATTTATAAATAATTTAATCAACAAACACTAAACCCTAATTTATTTAA
TTTTTTTCCTTAAAAACCATCAACACTAAACCA
Found at i:64549074 original size:21 final size:21
Alignment explanation
Indices: 64549048--64549092 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
64549038 CACCTGATAC
64549048 AAACAGTTGAAAACAATAAAA
1 AAACAGTTGAAAACAATAAAA
* *
64549069 AAACAGTTGAAAATAGTAAAA
1 AAACAGTTGAAAACAATAAAA
64549090 AAA
1 AAA
64549093 AATTGAATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.67, C:0.07, G:0.11, T:0.16
Consensus pattern (21 bp):
AAACAGTTGAAAACAATAAAA
Found at i:64549098 original size:20 final size:21
Alignment explanation
Indices: 64549048--64549099 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
64549038 CACCTGATAC
*
64549048 AAACAGTTGAAAACAATAAAA
1 AAACAATTGAAAACAATAAAA
* * *
64549069 AAACAGTTGAAAATAGTAAAA
1 AAACAATTGAAAACAATAAAA
64549090 AAA-AATTGAA
1 AAACAATTGAA
64549100 TCTGAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 6 0.21
21 22 0.79
ACGTcount: A:0.65, C:0.06, G:0.12, T:0.17
Consensus pattern (21 bp):
AAACAATTGAAAACAATAAAA
Found at i:64549168 original size:27 final size:27
Alignment explanation
Indices: 64549130--64549185 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
64549120 ACTATAAAAT
*
64549130 ACTGGTCTTGCCTCTGTCAGAGGCAGC
1 ACTGGTCTTGCCTCTGCCAGAGGCAGC
* *
64549157 ACTGGTCTTGCCTTTGCCAGAGGCGGC
1 ACTGGTCTTGCCTCTGCCAGAGGCAGC
64549184 AC
1 AC
64549186 CAGTTGGTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.14, C:0.30, G:0.30, T:0.25
Consensus pattern (27 bp):
ACTGGTCTTGCCTCTGCCAGAGGCAGC
Found at i:64549766 original size:27 final size:27
Alignment explanation
Indices: 64549728--64549783 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
64549718 ATACCAACTG
64549728 GTGCCACCTCTGGTAGAGGCAAGACCA
1 GTGCCACCTCTGGTAGAGGCAAGACCA
*
64549755 GTGCCACCTCTGGTAGAGGCAATACCA
1 GTGCCACCTCTGGTAGAGGCAAGACCA
64549782 GT
1 GT
64549784 ATTTTATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.29, G:0.29, T:0.18
Consensus pattern (27 bp):
GTGCCACCTCTGGTAGAGGCAAGACCA
Found at i:64549846 original size:21 final size:21
Alignment explanation
Indices: 64549820--64549861 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
64549810 TTCAAATTCA
*
64549820 ATTTTTTTACTGTTTTCAACT
1 ATTTTTTTACTATTTTCAACT
*
64549841 ATTTTTTTACTATTTTTAACT
1 ATTTTTTTACTATTTTCAACT
64549862 GTTTGTGTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.12, G:0.02, T:0.64
Consensus pattern (21 bp):
ATTTTTTTACTATTTTCAACT
Found at i:64550977 original size:22 final size:22
Alignment explanation
Indices: 64550946--64550995 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
64550936 TTATAATTTC
*
64550946 AAAAATAACT-ATATTTTTTTA-
1 AAAAATAACTCAT-TTATTTTAT
64550967 AAAAATAAACTCATTTATTTTAT
1 AAAAAT-AACTCATTTATTTTAT
64550990 AAAAAT
1 AAAAAT
64550996 TTCCATTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 6 0.24
22 11 0.44
23 8 0.32
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (22 bp):
AAAAATAACTCATTTATTTTAT
Found at i:64562766 original size:22 final size:24
Alignment explanation
Indices: 64562712--64562766 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 24
64562702 TATATAACTG
64562712 ATAATAT-TA-AAATATATACATA
1 ATAATATATATAAATATATACATA
* *
64562734 ATATTATATATAAAT-TATTCAT-
1 ATAATATATATAAATATATACATA
64562756 ATAATATATAT
1 ATAATATATAT
64562767 TAAAAAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
22 16 0.57
23 8 0.29
24 4 0.14
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.44
Consensus pattern (24 bp):
ATAATATATATAAATATATACATA
Found at i:64563065 original size:3 final size:3
Alignment explanation
Indices: 64563057--64563109 Score: 88
Period size: 3 Copynumber: 17.3 Consensus size: 3
64563047 ACTAATGTGC
*
64563057 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAAT AAT AAT AAT ATT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT
64563103 AAT AAT A
1 AAT AAT A
64563110 TGAAAATAAC
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
3 44 0.94
4 3 0.06
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:64563991 original size:35 final size:35
Alignment explanation
Indices: 64563945--64564013 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
64563935 GGGTGTGTGA
64563945 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGAG
1 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGAG
64563980 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
64564014 AGAGGCAAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.20, C:0.12, G:0.51, T:0.17
Consensus pattern (35 bp):
TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGAG
Found at i:64564775 original size:15 final size:16
Alignment explanation
Indices: 64564742--64564775 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
64564732 TTGATTTTTG
* *
64564742 AAAAGCATAGATTGAA
1 AAAAACATAAATTGAA
64564758 AAAAACATAAATTGAA
1 AAAAACATAAATTGAA
64564774 AA
1 AA
64564776 TACCTCAGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.65, C:0.06, G:0.12, T:0.18
Consensus pattern (16 bp):
AAAAACATAAATTGAA
Found at i:64565277 original size:192 final size:193
Alignment explanation
Indices: 64564794--64565324 Score: 992
Period size: 192 Copynumber: 2.8 Consensus size: 193
64564784 CATGTGAGCC
** *
64564794 GAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTTAACT
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTGAAAAACAAAAATTAAAAGGCTTAACT
64564859 CACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTC
65 CACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTC
*
64564924 AACTCATTTCTCGCAATATGAGTTGATTTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
130 AACTCACTTCTCGCAATATGAGTTGATTTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
64564988 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
64565053 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
66 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
*
64565118 ACTCACTTCTCGCAATATTAGTTGATTTTTTTT-AAAAATTTAAAAATACCTCAACGTGTCTT
131 ACTCACTTCTCGCAATATGAGTTGATTTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
64565180 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
*
64565245 ACCTCTCACAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
66 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
64565310 ACTCACTTCTCGCAA
131 ACTCACTTCTCGCAA
64565325 AAATTTAAAA
Statistics
Matches: 331, Mismatches: 6, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
192 173 0.52
193 128 0.39
194 30 0.09
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.29
Consensus pattern (193 bp):
GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
ACTCACTTCTCGCAATATGAGTTGATTTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
Found at i:64584065 original size:11 final size:11
Alignment explanation
Indices: 64584023--64584065 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
64584013 TTATTTGTGT
**
64584023 TTATTTTTTCC
1 TTATTTTTTAA
64584034 TTATTTTTTATGA
1 TTATTTTTTA--A
64584047 TTATTTTTTAA
1 TTATTTTTTAA
64584058 TTATTTTT
1 TTATTTTT
64584066 GAACTTTCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 18 0.64
13 10 0.36
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.74
Consensus pattern (11 bp):
TTATTTTTTAA
Found at i:64585191 original size:33 final size:35
Alignment explanation
Indices: 64585152--64585225 Score: 102
Period size: 32 Copynumber: 2.2 Consensus size: 35
64585142 AATAGTTTTT
*
64585152 ATATTTTTTTATTTAAAACA-ATTT-TGAAA-ATAA
1 ATATTTTTTTATTGAAAACATATTTAT-AAATATAA
64585185 ATA-TTTTTTATTGAAAACATATTTATAAATATAA
1 ATATTTTTTTATTGAAAACATATTTATAAATATAA
64585219 ATATTTT
1 ATATTTT
64585226 CTACTTAACA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
32 15 0.42
33 10 0.28
34 8 0.22
35 3 0.08
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (35 bp):
ATATTTTTTTATTGAAAACATATTTATAAATATAA
Found at i:64585710 original size:27 final size:26
Alignment explanation
Indices: 64585680--64585736 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
64585670 AATTTTTTTT
64585680 AAATGCAAAATTATTGAAATTATTAAA
1 AAATGCAAAATTATTGAAATT-TTAAA
** * *
64585707 AAATTTAAAATTTTTTAAATTTTAAA
1 AAATGCAAAATTATTGAAATTTTAAA
64585733 AAAT
1 AAAT
64585737 TAATTAAATG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (26 bp):
AAATGCAAAATTATTGAAATTTTAAA
Found at i:64586342 original size:17 final size:18
Alignment explanation
Indices: 64586320--64586360 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
64586310 AATTAATTCA
**
64586320 TTTTTAAT-ATTTTTTAT
1 TTTTTAATAATTTAATAT
64586337 TTTTTAATAATTTAATAT
1 TTTTTAATAATTTAATAT
64586355 TTTTTA
1 TTTTTA
64586361 TTTTTATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTTAATAATTTAATAT
Done.