Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 215 of 240
Found at i:64921680 original size:16 final size:16
Alignment explanation
Indices: 64921659--64921698 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
64921649 TTAGGACTGC
64921659 TATTTTTAA-AGTTTGT
1 TATTTTTAATA-TTTGT
64921675 TATTTTTAATATTTGT
1 TATTTTTAATATTTGT
64921691 TATTTTTA
1 TATTTTTA
64921699 GGTGTTTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 22 0.96
17 1 0.04
ACGTcount: A:0.25, C:0.00, G:0.07, T:0.68
Consensus pattern (16 bp):
TATTTTTAATATTTGT
Found at i:64923179 original size:17 final size:17
Alignment explanation
Indices: 64923154--64923186 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
64923144 GGAAAAGACA
*
64923154 TATATGACAGAAGATGC
1 TATAAGACAGAAGATGC
64923171 TATAAGACAGAAGATG
1 TATAAGACAGAAGATG
64923187 TTCGAAGTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.09, G:0.24, T:0.21
Consensus pattern (17 bp):
TATAAGACAGAAGATGC
Found at i:64928034 original size:22 final size:23
Alignment explanation
Indices: 64927993--64928038 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
64927983 TAAATGACAA
64927993 TGGAATTAGTTCAAAAAAATGCT
1 TGGAATTAGTTCAAAAAAATGCT
64928016 TGGAATTAGTTC-AAAAAATGCT
1 TGGAATTAGTTCAAAAAAATGCT
64928038 T
1 T
64928039 ACATCAATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.41, C:0.09, G:0.17, T:0.33
Consensus pattern (23 bp):
TGGAATTAGTTCAAAAAAATGCT
Found at i:64931756 original size:3 final size:3
Alignment explanation
Indices: 64931750--64931779 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
64931740 CAGCAGCAGC
64931750 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
64931780 TGTTGAAGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:64934572 original size:21 final size:22
Alignment explanation
Indices: 64934543--64934589 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
64934533 CAGAAGGAGT
*
64934543 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
64934565 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
64934586 GAGT
1 GAGT
64934590 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:64936002 original size:15 final size:15
Alignment explanation
Indices: 64935982--64936011 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
64935972 CTTTTTTGGC
*
64935982 CGATTTGCTTTCTGT
1 CGATTTGCTCTCTGT
64935997 CGATTTGCTCTCTGT
1 CGATTTGCTCTCTGT
64936012 TTTACCCTCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.23, G:0.20, T:0.50
Consensus pattern (15 bp):
CGATTTGCTCTCTGT
Found at i:64937065 original size:19 final size:19
Alignment explanation
Indices: 64937041--64937077 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
64937031 GCATGACCTC
64937041 TATATGCACCTGAACGATG
1 TATATGCACCTGAACGATG
*
64937060 TATATGTACCTGAACGAT
1 TATATGCACCTGAACGAT
64937078 AATATTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (19 bp):
TATATGCACCTGAACGATG
Found at i:64939111 original size:61 final size:61
Alignment explanation
Indices: 64939045--64939235 Score: 166
Period size: 61 Copynumber: 3.2 Consensus size: 61
64939035 ATTTCATAGT
*
64939045 ATTATATATTATGATTTTAAAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
1 ATTATATATTATGATTTTAAAAAATTAATATAAGAATATTTAATATTAAGAATTTTATTAA
* * * * *
64939106 ATTATATATT-TTA-ATTAAAATATATTTAATAGT-A-ATTATGTTAAT-TT-A-TATTTTA-CA
1 ATTATATATTATGATTTTAAAA-A-A-TTAATA-TAAGAATAT-TTAATATTAAGAATTTTATTA
*
64939163 GT
61 -A
* * *
64939165 ATCATATATTATGATTTCAATAAATTAATATAAGAATA-TTAATTATTAAGAATTTTATTAA
1 ATTATATATTATGATTTTAAAAAATTAATATAAGAATATTTAA-TATTAAGAATTTTATTAA
64939226 ATTATATATT
1 ATTATATATT
64939236 TTAATTAAAA
Statistics
Matches: 98, Mismatches: 17, Indels: 30
0.68 0.12 0.21
Matches are distributed among these distances:
57 5 0.05
58 9 0.09
59 27 0.28
60 8 0.08
61 36 0.37
62 12 0.12
63 1 0.01
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (61 bp):
ATTATATATTATGATTTTAAAAAATTAATATAAGAATATTTAATATTAAGAATTTTATTAA
Found at i:64939122 original size:18 final size:17
Alignment explanation
Indices: 64939096--64939130 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
64939086 AATATTAAGA
*
64939096 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
64939113 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
64939131 TTAATAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:64939142 original size:120 final size:120
Alignment explanation
Indices: 64938989--64939272 Score: 446
Period size: 120 Copynumber: 2.4 Consensus size: 120
64938979 TAATTGAAAA
* * *
64938989 TATATATTTT-ATTAAATTATATTTAATAATAATTATGTTAAATTATATTTCATAGTATTATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATA
* *
64939053 TTATGATTTTAAAAAATTCATATAAGAATATTTAA-TATTAAGAATTTTATTAAAT
66 TTATGATTTCAAAAAATTAATATAAGAATA-TTAATTATTAAGAATTTTATTAAAT
* * *
64939108 TATATATTTTAATTAAAATATATTTAATAGTAATTATGTTAATTTATATTTTACAGTATCATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATA
*
64939173 TTATGATTTCAATAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
66 TTATGATTTCAAAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
*
64939228 TATATATTTTAATTAAAATATATTTAATAAAAATTATGTTTAAAT
1 TATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
64939273 ATGATTAAAT
Statistics
Matches: 150, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
119 14 0.09
120 131 0.87
121 5 0.03
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (120 bp):
TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATA
TTATGATTTCAAAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
Found at i:64939244 original size:18 final size:17
Alignment explanation
Indices: 64939216--64939250 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
64939206 ATTATTAAGA
*
64939216 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
64939233 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
64939251 TTAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:64939250 original size:16 final size:16
Alignment explanation
Indices: 64939216--64939270 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
64939206 ATTATTAAGA
64939216 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
64939233 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
64939249 A-TTTAATAAAAAT-T
1 ATTTTAATTAAAATAT
64939263 ATGTTTAA
1 AT-TTTAA
64939271 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:64939507 original size:16 final size:16
Alignment explanation
Indices: 64939486--64939533 Score: 87
Period size: 16 Copynumber: 3.0 Consensus size: 16
64939476 GATTTGCTAT
64939486 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
64939502 TACACCTTTAATCCAA
1 TACACCTCTAATCCAA
64939518 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
64939534 ACAGTTTACA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.27
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:64939768 original size:20 final size:21
Alignment explanation
Indices: 64939731--64939773 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 21
64939721 TTCTTTTAAA
64939731 AATAAAATATTATAAAAA-TT
1 AATAAAATATTATAAAAAGTT
* * *
64939751 AATAAATTATTTTTAAAAGTT
1 AATAAAATATTATAAAAAGTT
64939772 AA
1 AA
64939774 ATTTATGCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (21 bp):
AATAAAATATTATAAAAAGTT
Found at i:64939934 original size:16 final size:15
Alignment explanation
Indices: 64939913--64939944 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
64939903 TTTCAAATAT
64939913 ATAATAATTATAAAAA
1 ATAATAA-TATAAAAA
64939929 ATAATAATATAAAAA
1 ATAATAATATAAAAA
64939944 A
1 A
64939945 CTTGACATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
ATAATAATATAAAAA
Found at i:64943545 original size:213 final size:213
Alignment explanation
Indices: 64943178--64946827 Score: 4421
Period size: 213 Copynumber: 17.1 Consensus size: 213
64943168 CAACTATTTC
* *
64943178 AAGAGATTTCAATTTATAAAAGCTATCAGGAAGGCAAACAAGGTTTTCACAATTGTTCAA-ACTC
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATAC-C
* * **
64943242 AACTCAAT-AAGACCAATAAGATTTTCTATTGAGGATGGTAATTCCTTCAAAGTTGTTCCGCTTA
65 AATTC-CTCAAGACCAATAAGATTTTCTATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTA
*
64943306 AATCAAGATCCCTCAAACTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAA
129 AATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAA
64943371 CCTTGAAGTGTTAATCTCTT
194 CCTTGAAGTGTTAATCTCTT
* * * *
64943391 AAGAGATTTCAATTTATAAAAGTTGTCAGGAAGGCAAAGAAGGTTTTCACAATTGTTCACTACCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATACCA
*
64943456 ATTCCTCAAGACCAATAAGATTTTCTATTGAGGATGGTAATTCCTTCAAAGCCGTTCCACTTAAA
66 ATTCCTCAAGACCAATAAGATTTTCTATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
*
64943521 TCAAGATCCCTCAATCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAACC
131 TCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAACC
*
64943586 TTAAAGTGTTAATCTCTT
196 TTGAAGTGTTAATCTCTT
* * * * *
64943604 AAGAGATTTCAATTTATAAAAGTTGTCAGGAAGACAAACAAGATTTTCATAATTGTTCAATACCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATACCA
* *
64943669 ATTCCTCAAGACCAATAAGATTTTCTATTGAGGATAGTAATTCCTTCAAAG-TGTTCCGCTTAAA
66 ATTCCTCAAGACCAATAAGATTTTCTATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
* * *
64943733 TCAAGATCGCTCAACCTCTCCATGGTCTCTTAAGATTTTTGGAAAAATCTCAAATCTCGAGCAAC
131 TCAAGATCCCTCAACCTCTCCATGGTCTC-TAAGATTTCTGGAAAAATCTCCAATCTCGAGCAAC
*
64943798 CTTGAAGTGTTAATCTCTC
195 CTTGAAGTGTTAATCTCTT
* ** *
64943817 AAGAGATTTCAATTTATAAAAGCTGTCAAGAATACAAATAAGGTTTTCACAGTTGTTCAA-ACTC
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATAC-C
* * * * *
64943881 AACTT-CACAAGACCAATAAGATTGTCAATTGAGGAGGGTAATTCCTTCAAAGCCGTTCTGCTTA
65 AA-TTCCTCAAGACCAATAAGATTTTCTATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTA
* * * * * * * * * *
64943945 AATTAAGCTTCATCAACATCACCATAGTGTCCAAGATTTCTGGAAAAATCTCCAATCTTGAGCAA
129 AATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAA
* ** * *
64944010 CCTTTTAAGAT-CCAATTTCTC
194 CC-TTGAAG-TGTTAATCTCTT
* * * * * *
64944031 AAGAAATTTCAATTTACAAAAGCTGTTAGGAAGACAAACAAGGTTTTCACAGTTGTCCAATATCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATACCA
* ** * * *
64944096 ACTT-CACAAGACCAATAAGATTGCCAATTAATGG-TGGTAATTCCTTCAAAGCCATTCCGCTTA
66 A-TTCCTCAAGACCAATAAGATTTTCTATTGA-GGATGGTAATTCCTTCAAAGCCGTTCCGCTTA
* * *
64944159 AATCAAGCTCCCTCAACCTCTCCATCGTCTCTAAGATTTCTGGAAATATCTCCAATCTCGAGCAA
129 AATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAA
* ** * *
64944224 CCTTTAAGAT-CCAATTTCTC
194 CCTTGAAG-TGTTAATCTCTT
* * * * * * *
64944244 AAGAAATTTCAATTTACAAAAGCTGTCAAGAAGGAAAACAAAGTTTTCACAGTTGTCCAATATCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATACCA
* * ** * * *
64944309 AATACTTGAGACCAATAAGATTTTCTATTGAGGTTGGTAATTCTTTCAAAGTCGTTCCGCTTAAA
66 ATTCCTCAAGACCAATAAGATTTTCTATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
* * * *
64944374 TCAAGATCCGTCAACATCTCCATGGTCTCTAAGATTTCTGGGAAAATCTCCAATCACGAGCAACC
131 TCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAACC
*
64944439 TTGAAGTGTGAATCTCTT
196 TTGAAGTGTTAATCTCTT
* * **
64944457 AAGAGATTTCAATTTATAAAAGCTATCGGGAAGGCAAACAAGGTTTTCGTAGTTGTTCAA-ACTC
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATAC-C
* ** * * * *
64944521 AAATCCTCAAGACCAATAAGATTGCCAATTGAGGATGGCAATTCCATCAAAGTCC-TTACGCTTA
65 AATTCCTCAAGACCAATAAGATTTTCTATTGAGGATGGTAATTCCTTCAAAG-CCGTTCCGCTTA
* * * * * * * *
64944585 AATCAAGATCACTAAACATCTCCACGGTGTCTATGACTTCTGGGAAAATCTCCAATCTCGAGCAA
129 AATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAA
* * *
64944650 CCTTCAAGATCG--AATATGTT
194 CCTTGAAG-T-GTTAATCTCTT
* * * *
64944670 TAGAGATTTCAGTTTATAAAAGTTGTCAGGAAGGCAAACAAGGTTTTCACAGTT-TTCCAATATC
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTT-CAATACC
* * * *
64944734 AAATACTCAAGACCAATAAGATTTTCTACTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAG
65 AATTCCTCAAGACCAATAAGATTTTCTATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAA
* *
64944799 ATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGGAAAATCTCCAATCTCGAGCAAT
130 ATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAAC
64944864 CTTGAAGTGTTAATCTCTT
195 CTTGAAGTGTTAATCTCTT
* *
64944883 AAGAGATTTCAATTTATAAAAGTTGTCAGGAAGGCAAACAAGGTTTTCACAATTGTTCAATACCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATACCA
* * * *
64944948 ATTCCTCAAGACCAATAAGATTATCGATTGAGGATGGTAATTCCTTCAAAGCCGTT-TGATCTAA
66 ATTCCTCAAGACCAATAAGATTTTCTATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCT-TAA
* * * * *
64945012 ATCAAGA-CGCCTCAACCTCTCCATGGTGTCCATGATTTCTGGGAAAGTCTCCAATCTCGAGCAA
130 ATCAAGATC-CCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAA
64945076 CCTTGAAGTGTTAATCTCTT
194 CCTTGAAGTGTTAATCTCTT
* * * * *
64945096 AAGAGATTTCAATTTATAAAAGTTGTCAGGAAGACAAACAAGATTTTCATAATTGTTCAATACCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATACCA
* *
64945161 ATTCCTCAAGACCAATAAGATTTTCTATTGAGGATAGTAATTCCTTCAAAG-TGTTCCGCTTAAA
66 ATTCCTCAAGACCAATAAGATTTTCTATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
* * *
64945225 TCAAGATCGCTCAACCTCTCCATGGTCTCTTAAGATTTTTGGAAAAATCTCAAATCTCGAGCAAC
131 TCAAGATCCCTCAACCTCTCCATGGTCTC-TAAGATTTCTGGAAAAATCTCCAATCTCGAGCAAC
*
64945290 CTTGAAGTGTTAATCTCTC
195 CTTGAAGTGTTAATCTCTT
* ** *
64945309 AAGAGATTTCAATTTATAAAAGCTGTCAAGAATACAAATAA-GTTTTCACAGTTGTTCAA-ACTC
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATAC-C
* * * * *
64945372 AACTT-CACAAGACCAATAAGATTGTCAATTGAGGAGGGTAATTCCTTCAAAGCCGTTCTGCTTA
65 AA-TTCCTCAAGACCAATAAGATTTTCTATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTA
* * * * * * * * *
64945436 AATTAAGCTTCATCAACATCACCATAGTGTCCAAGATTTCTGGAAAAATCTCCAATCTCGAGCAA
129 AATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAA
* ** * *
64945501 CCTTTTAAGAT-CCAATTTCTC
194 CC-TTGAAG-TGTTAATCTCTT
* * * * * *
64945522 AAGAAATTTCAATTTACAAAAGCTGTTAGGAAGACAAACAAGGTTTTCACAGTTGTCCAATATCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATACCA
* ** * ** * *
64945587 ACTT-CACAAGACCAATAAGATTGCCAATCAATGG-TGGTAATTCCTTCAAAGCCATTCCTCTTA
66 A-TTCCTCAAGACCAATAAGATTTTCTATTGA-GGATGGTAATTCCTTCAAAGCCGTTCCGCTTA
* * * *
64945650 AATCAAGCTCCCCCAACCTCTCCATCGTCTCTAAGATTTCTGGAAATATCTCCAATCTCGAGCAA
129 AATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAA
* ** * *
64945715 CCTTTAAGAT-CCAATTTCTC
194 CCTTGAAG-TGTTAATCTCTT
* * * * * * *
64945735 AAGAAATTTCAATTTACAAAAGCTGTCAAGAAGGAAAACAAAGTTTTCACAGTTGTCCAATATCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATACCA
* * ** * * *
64945800 AATACTTGAGACCAATAAGATTTTCTATTGAGGTTGGTAATTCTTTCAAAGTCGTTCCGCTTAAA
66 ATTCCTCAAGACCAATAAGATTTTCTATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
* * * *
64945865 TCAAGATCCGTCAACATCTCCATGGTCTCTAAGATTTCTGGGAAAATCTCCAATCACGAGCAACC
131 TCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAACC
*
64945930 TTGAAGTGTGAATCTCTT
196 TTGAAGTGTTAATCTCTT
* * **
64945948 AAGAGATTTCAATTTATAAAAGCTATCGGGAAGGCAAACAAGGTTTTCGTAGTTGTTCAA-ACTC
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATAC-C
* ** * * * *
64946012 AAATCCTCAAGACCAATAAGATTGCCAATTGAGGATGGCAATTCCATCAAAGTCC-TTACGCTTA
65 AATTCCTCAAGACCAATAAGATTTTCTATTGAGGATGGTAATTCCTTCAAAG-CCGTTCCGCTTA
* * * * * * * *
64946076 AATCAAGATCACTAAACATCTCCACGGTGTCTATGACTTCTGGGAAAATCTCCAATCTCGAGCAA
129 AATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAA
* * *
64946141 CCTTCAAGATCG--AATATGTT
194 CCTTGAAG-T-GTTAATCTCTT
* * * *
64946161 TAGAGATTTCAGTTTATAAAAGTTGTCAGGAAGGCAAACAAGGTTTTCACAGTT-TTCCAATATC
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTT-CAATACC
* * * * *
64946225 AAATACTCAAGACCAATAAGATTTTCTACTGAGGATGGTAATTCCTTCAAAGCTGTTCCGCTTAG
65 AATTCCTCAAGACCAATAAGATTTTCTATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAA
* *
64946290 ATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGGAAAATCTCCAATCTCGAGCAAT
130 ATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAAC
64946355 CTTGAAGTGTTAATCTCTT
195 CTTGAAGTGTTAATCTCTT
* *
64946374 AAGAGATTTCAATTTATAAAAGTTGTCAGGAAGGCAAACAAGGTTTTCACAATTGTTCAATACCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATACCA
* * * *
64946439 ATTCCTCAAGACCAATAAGATTATCGATTGAGGATGGTAATTCCTTCAAAGCCGTT-TGATCTAA
66 ATTCCTCAAGACCAATAAGATTTTCTATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCT-TAA
* * * * *
64946503 ATCAAGA-CGCCTCAACCTCTCCATGGTGTCCATGATTTCTGGGAAAGTCTCCAATCTCGAGCAA
130 ATCAAGATC-CCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAA
64946567 CCTTGAAGTGTTAATCTCTT
194 CCTTGAAGTGTTAATCTCTT
* * * * *
64946587 AAGAGATTTCAATTTATAAAAGTTGTCAGGAAGACAAACAAGATTTTCATAATTGTTCAATACCA
1 AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATACCA
* *
64946652 ATTCCTCAAGACCAATAAGATTTTCTATTGAGGATAGTAATTCCTTCAAAG-TGTTCCGCTTAAA
66 ATTCCTCAAGACCAATAAGATTTTCTATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
* * *
64946716 TCAAGATCGCTCAACCTCTCCATGGTCTCTTAAGATTTTTGGAAAAATCTCAAATCTCGAGCAAC
131 TCAAGATCCCTCAACCTCTCCATGGTCTC-TAAGATTTCTGGAAAAATCTCCAATCTCGAGCAAC
*
64946781 CTTGAAGTGTTAATCTCTC
195 CTTGAAGTGTTAATCTCTT
64946800 AAGAGATTTCAATTTATAAAAGCTGTCA
1 AAGAGATTTCAATTTATAAAAGCTGTCA
64946828 AGAATACAAA
Statistics
Matches: 2993, Mismatches: 390, Indels: 108
0.86 0.11 0.03
Matches are distributed among these distances:
211 4 0.00
212 223 0.07
213 2403 0.80
214 354 0.12
215 9 0.00
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (213 bp):
AAGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTCACAGTTGTTCAATACCA
ATTCCTCAAGACCAATAAGATTTTCTATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
TCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTCTGGAAAAATCTCCAATCTCGAGCAACC
TTGAAGTGTTAATCTCTT
Found at i:64952108 original size:213 final size:213
Alignment explanation
Indices: 64951635--64953259 Score: 1792
Period size: 213 Copynumber: 7.6 Consensus size: 213
64951625 CCCGTATCAT
* * * *
64951635 AAGGTTTTCACAGTTGTTCAA-ACTCAACTTCACAAGACCAATAAGATTGTCAATTGAGGAGGGT
1 AAGGTTTTCACAGTTGTTCAATA-TCAAATCCTCAAGACCAATAAGATTGTCAATTGAGGATGGT
* * * * * * * *
64951699 AATTCCTTCAAAGCCGTTCTGCTTAAATTAAGCTTCATCAACATCACCATAGTGTCCAAGATTTC
65 AATTCCTTCAAAGCCGTTCCGCTTAAATCAAGATCCCTCAACATCTCCATGGTGTCTAAGATTTC
* * * * * *
64951764 TGGAAAAATCTCCAATCTCGAGCAACCTTTTAAGATCCAATTTCTCAAGAAATTTCAATTTACAA
130 TGGGAAAATCTCCAATCTCGAGCAACC-TTTAAGATCGAATCTCTTAAGAGATTTCAATTTATAA
* *
64951829 AAGCTGTTAGGAAGACAAAC
194 AAGCTGTCAGGAAGGCAAAC
* * * * * **
64951849 AAGGTTTTCACAGTTGTCCAATATCAACTTCACAAGACCAATAAGATTGCCAATCAATGG-TGGT
1 AAGGTTTTCACAGTTGTTCAATATCAAATCCTCAAGACCAATAAGATTGTCAATTGA-GGATGGT
* ** * * * * *
64951913 AATTCCTTCAAAGCCATTCCTTTTAAATCAAGCTCCCCCAACCTCTCCATCGTCTCTAAGATTTC
65 AATTCCTTCAAAGCCGTTCCGCTTAAATCAAGATCCCTCAACATCTCCATGGTGTCTAAGATTTC
* * * * *
64951978 T-GGAAATATCTCCAATCTCGAGCAACCTTTAAGATCCAATTTCTCAAGAAATTTCAATTTACAA
130 TGGGAAA-ATCTCCAATCTCGAGCAACCTTTAAGATCGAATCTCTTAAGAGATTTCAATTTATAA
* *
64952042 AAGCTGTCAAGAAGGAAAAC
194 AAGCTGTCAGGAAGGCAAAC
* * * ** * * *
64952062 AAAGTTTTCACAGTTGTCCAATATCAAATACTTGAGACCAATAAGATTTTCTATTGAGGTTGGTA
1 AAGGTTTTCACAGTTGTTCAATATCAAATCCTCAAGACCAATAAGATTGTCAATTGAGGATGGTA
* * * *
64952127 ATTCTTTCAAAGTCGTTCCGCTTAAATCAAGATCCGTCAACATCTCCATGGTCTCTAAGATTTCT
66 ATTCCTTCAAAGCCGTTCCGCTTAAATCAAGATCCCTCAACATCTCCATGGTGTCTAAGATTTCT
* * *
64952192 GGGAAAATCTCCAATCACGAGCAACCTTGAAG-TGTGAATCTCTTAAGAGATTTCAATTTATAAA
131 GGGAAAATCTCCAATCTCGAGCAACCTTTAAGAT-CGAATCTCTTAAGAGATTTCAATTTATAAA
*
64952256 AGCTATCAGGAAGGCAAAC
195 AGCTGTCAGGAAGGCAAAC
** * *
64952275 AAGGTTTTCGTAGTTGTTCAA-ACTCAAATCCTCAAGACCAATAAGATTGCCAATTGAGGATGGC
1 AAGGTTTTCACAGTTGTTCAATA-TCAAATCCTCAAGACCAATAAGATTGTCAATTGAGGATGGT
* * * * * * *
64952339 AATTCCATCAAAGTCC-TTACGCTTAAATCAAGATCACTAAACATCTCCACGGTGTCTATGACTT
65 AATTCCTTCAAAG-CCGTTCCGCTTAAATCAAGATCCCTCAACATCTCCATGGTGTCTAAGATTT
* * * * *
64952403 CTGGGAAAATCTCCAATCTCGAGCAACCTTCAAGATCGAATATGTTTAGAGATTTCAGTTTATAA
129 CTGGGAAAATCTCCAATCTCGAGCAACCTTTAAGATCGAATCTCTTAAGAGATTTCAATTTATAA
*
64952468 AAGTTGTCAGGAAGGCAAAC
194 AAGCTGTCAGGAAGGCAAAC
* * * *
64952488 AAGGTTTTCACAGTT-TTCCAATATCAAATACTCAAGACCAATAAGATTTTCTACTGAGGATGGT
1 AAGGTTTTCACAGTTGTT-CAATATCAAATCCTCAAGACCAATAAGATTGTCAATTGAGGATGGT
* * *
64952552 AATTCCTTCAAAGCCGTTCCGCTTAGATCAAGATCCCTCAACCTCTCCATGGTCTCTAAGATTTC
65 AATTCCTTCAAAGCCGTTCCGCTTAAATCAAGATCCCTCAACATCTCCATGGTGTCTAAGATTTC
* *
64952617 TGGGAAAATCTCCAATCTCGAGCAATCTTGAAG-T-GTTAATCTCTTAAGAGATTTCAATTTATA
130 TGGGAAAATCTCCAATCTCGAGCAACCTTTAAGATCG--AATCTCTTAAGAGATTTCAATTTATA
*
64952680 AAAGTTGTCAGGAAGGCAAAC
193 AAAGCTGTCAGGAAGGCAAAC
* * * * *
64952701 AAGGTTTTCACAATTGTTCAATACCAATTCCTCAAGACCAATAAGATTATCGATTGAGGATGGTA
1 AAGGTTTTCACAGTTGTTCAATATCAAATCCTCAAGACCAATAAGATTGTCAATTGAGGATGGTA
* * * * *
64952766 ATTCCTTCAAAGCCGTT-TGATCTAAATCAAGA-CGCCTCAACCTCTCCATGGTGTCCATGATTT
66 ATTCCTTCAAAGCCGTTCCGCT-TAAATCAAGATC-CCTCAACATCTCCATGGTGTCTAAGATTT
* * * * *
64952829 CTGGGAAAGTCTCCAATCTCGAGCAACCTTCAAGA-CAAAATATCTTGAGAGATTTCAATTTATA
129 CTGGGAAAATCTCCAATCTCGAGCAACCTTTAAGATC-GAATCTCTTAAGAGATTTCAATTTATA
* *
64952893 AAAGCTATCAGGAAGGCAAAT
193 AAAGCTGTCAGGAAGGCAAAC
* * * * * *
64952914 AAGGTTTTTACAGTTTTTCAATTTCAAATCCACAAGACTAATAAGATTATCAATTGAGGATGGTA
1 AAGGTTTTCACAGTTGTTCAATATCAAATCCTCAAGACCAATAAGATTGTCAATTGAGGATGGTA
* * * * *
64952979 ATTCCTTCAAATCTGATCC-CTTTAAATC---ATCCCTCAACATCTCCATGTTGTCTATGATTTC
66 ATTCCTTCAAAGCCGTTCCGC-TTAAATCAAGATCCCTCAACATCTCCATGGTGTCTAAGATTTC
* * *
64953040 TGGGAAAGTCTCCAATCTCGAGCAACCTTTAAGATAGAATCTCTTGAGAGATTTCAATTTATAAA
130 TGGGAAAATCTCCAATCTCGAGCAACCTTTAAGATCGAATCTCTTAAGAGATTTCAATTTATAAA
* *
64953105 AGCTGTCAGAAAGACAAAC
195 AGCTGTCAGGAAGGCAAAC
* * * * * * * * * * *
64953124 AAGCTTTTTATAGTTTTTCAATCTCAATTGCTTAAGACCGATAAGGTTTTCAATTGAGGATGGTA
1 AAGGTTTTCACAGTTGTTCAATATCAAATCCTCAAGACCAATAAGATTGTCAATTGAGGATGGTA
* * * *
64953189 ATTCCTTCAAAGCCGTTCCGCTTAAATAAAGATGCCTCAA-ACTCTCCATGGTGTCCATGATTTC
66 ATTCCTTCAAAGCCGTTCCGCTTAAATCAAGATCCCTCAACA-TCTCCATGGTGTCTAAGATTTC
64953253 T-GGAAAA
130 TGGGAAAA
64953260 CTATACAGAT
Statistics
Matches: 1205, Mismatches: 177, Indels: 60
0.84 0.12 0.04
Matches are distributed among these distances:
210 179 0.15
211 3 0.00
212 18 0.01
213 864 0.72
214 138 0.11
215 3 0.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.30
Consensus pattern (213 bp):
AAGGTTTTCACAGTTGTTCAATATCAAATCCTCAAGACCAATAAGATTGTCAATTGAGGATGGTA
ATTCCTTCAAAGCCGTTCCGCTTAAATCAAGATCCCTCAACATCTCCATGGTGTCTAAGATTTCT
GGGAAAATCTCCAATCTCGAGCAACCTTTAAGATCGAATCTCTTAAGAGATTTCAATTTATAAAA
GCTGTCAGGAAGGCAAAC
Found at i:64962504 original size:213 final size:213
Alignment explanation
Indices: 64960352--64962435 Score: 3199
Period size: 213 Copynumber: 9.8 Consensus size: 213
64960342 AAGACACAAA
* * * * * * * *
64960352 AGAGATTTCAATTTAAAAAAGCTGTCAAGAAAGCAAACAAAGTTTTCACAGTCGTTCA-AGCTCA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATA-TTCA
* * *
64960416 AATACTTAAGACCAACAAGATTGTCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
65 AATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
* * *
64960481 TCAAGTTCATACAACCTCTCCATGGTGTCTATGATTTCCGGGAAAATCTCCAATCTCAAGCAACC
130 TCAAGTTCATACAACCTCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACC
* * ** * ** *
64960546 ATGAAGACGGAATGTTGTA
195 TTTAAGATAGAATCTCCTG
* *
64960565 AGAGATTTCAATTTACAAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTGTTCATATTCAA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATATTCAA
*
64960630 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCTGTTCCGCTTAAAT
66 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
*
64960695 CAAGTTCATACAACCTCTTCATGGTGTCCAAGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
131 CAAGTTCATACAACCTCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
64960760 TTAAGATAGAATCTCCTG
196 TTAAGATAGAATCTCCTG
*
64960778 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAGGCTTTTACAGTTGTTCATATTCAA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATATTCAA
* *
64960843 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGATAATTCCTTCAAAGCTGTTCCGCTTAAAT
66 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
*
64960908 CAAGTTCATACAACCTCTTCATGGTCTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
131 CAAGTTCATACAACCTCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
64960973 TTAAGATAGAATCTCCTG
196 TTAAGATAGAATCTCCTG
* *
64960991 AGAGATTTCAATTTATAAAAGCTGCCAGGAAGGAAAACAAGGTTTTTACAGTTTTTCA-ATCTCA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATAT-TCA
* *
64961055 AACCCTCAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
65 AATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
* * * *
64961120 TCAAGTTCCTTCAACCTCTCCATGGTGTCCATGATTTCTGGGAAAATCTCCAATCTCGAGCAACC
130 TCAAGTTCATACAACCTCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACC
*
64961185 TTTAAGATAGAATCTCTTG
195 TTTAAGATAGAATCTCCTG
*
64961204 AGAGATTTCAATTTATAAAAGTTGTCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATATTCAA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATATTCAA
*
64961269 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTTCGCTTAAAT
66 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
* * *
64961334 CAAGTTCGTACAACATCTTCATGGTGTCTATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
131 CAAGTTCATACAACCTCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
*
64961399 TTAAGATAGAATCT-CTCC
196 TTAAGATAGAATCTCCT-G
* * *
64961417 AGGGATTTCAATTTACAAAAGCTGTCAGGAAGGAAAACAAGGCTTTTACAGTTGTTCATATTCAA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATATTCAA
*
64961482 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTTCGCTTAAAT
66 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
* *
64961547 CAAGTTCGTACAACATCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
131 CAAGTTCATACAACCTCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
*
64961612 TTAAGATAGAATCT-CTCC
196 TTAAGATAGAATCTCCT-G
* * *
64961630 AGGGATTTCAATTTACAAAAGCTGTCAGGAAGGAAAACAAGGCTTTTACAGTTGTTCATATTCAA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATATTCAA
* * *
64961695 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCTGTTTCGTTTAAAT
66 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
*
64961760 CAAGTTCATACAACCTCTTCATGGTGTCCAAGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
131 CAAGTTCATACAACCTCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
64961825 TTAAGATAGAATCTCCTG
196 TTAAGATAGAATCTCCTG
* *
64961843 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAAGTTTCTACAGTTGTTCATATTCAA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATATTCAA
* *
64961908 ATCCTTAAGACCAATAAGATTGCCAATCGAGGATGGTAATTCCTTCAAAGCCGTTCCACTTAAAT
66 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
* * *
64961973 CAAGTTCATACAACCACTCCATGGTGTCCATGATTTCTGGGAAAATCTCCAATCTCGAGCAACCT
131 CAAGTTCATACAACCTCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
* * **
64962038 TGAAGATAAAATCTCGAG
196 TTAAGATAGAATCTCCTG
* *
64962056 AGAGATTTCAATTTACAAAAGCTGTCAGGAAGGCAAACAAGGTTTTTACAGTTGTTCATATTCAA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATATTCAA
* * *
64962121 A-CGCATAAGACCAATAAGATTGCCAATTGAGGATGGTATTTCCTTCAAAGCTGTTCCGCTTAAA
66 ATC-CTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAA
* * * *
64962185 TCAAGTTCGTACAACCACTCCATGGTGTCCATGATTTCCGGAAAAATCTCCAATCTCGAGCAACC
130 TCAAGTTCATACAACCTCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACC
* * ** * * *
64962250 ATGAAGACGGAATGTCGTA
195 TTTAAGATAGAATCTCCTG
* *
64962269 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGCAAACAAGGTTTTTGCAGTTGTTCATATTCAA
1 AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATATTCAA
* ** *
64962334 TTCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCATTTAAAA
66 ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
* * * * *
64962399 CAAGATGCCT-CAAACTCTCCATGGTGCCCATGATTTC
131 CAAG-TTCATACAACCTCTTCATGGTGTCCATGATTTC
64962436 TGGAAAACTA
Statistics
Matches: 1745, Mismatches: 118, Indels: 16
0.93 0.06 0.01
Matches are distributed among these distances:
212 4 0.00
213 1732 0.99
214 9 0.01
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29
Consensus pattern (213 bp):
AGAGATTTCAATTTATAAAAGCTGTCAGGAAGGAAAACAAGGTTTTTACAGTTGTTCATATTCAA
ATCCTTAAGACCAATAAGATTGCCAATTGAGGATGGTAATTCCTTCAAAGCCGTTCCGCTTAAAT
CAAGTTCATACAACCTCTTCATGGTGTCCATGATTTCCGGGAAAATCTCCAATCTCGAGCAACCT
TTAAGATAGAATCTCCTG
Found at i:64973423 original size:21 final size:21
Alignment explanation
Indices: 64973397--64973437 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
64973387 ATCTGCTCAA
* *
64973397 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
64973418 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
64973438 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:64978827 original size:15 final size:15
Alignment explanation
Indices: 64978807--64978836 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
64978797 CTTTTTTGGC
*
64978807 CGATTTGCTTTCTGT
1 CGATTTGCTCTCTGT
64978822 CGATTTGCTCTCTGT
1 CGATTTGCTCTCTGT
64978837 TTTACCCTCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.23, G:0.20, T:0.50
Consensus pattern (15 bp):
CGATTTGCTCTCTGT
Found at i:64979890 original size:19 final size:19
Alignment explanation
Indices: 64979866--64979902 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
64979856 GCATGACCTC
64979866 TATATGCACCTGAACGATG
1 TATATGCACCTGAACGATG
*
64979885 TATATGTACCTGAACGAT
1 TATATGCACCTGAACGAT
64979903 AATATTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (19 bp):
TATATGCACCTGAACGATG
Found at i:64982018 original size:61 final size:61
Alignment explanation
Indices: 64981952--64982142 Score: 166
Period size: 61 Copynumber: 3.2 Consensus size: 61
64981942 ATTTCATAGT
*
64981952 ATTATATATTATGATTTTAAAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
1 ATTATATATTATGATTTTAAAAAATTAATATAAGAATATTTAATATTAAGAATTTTATTAA
* * * * *
64982013 ATTATATATT-TTA-ATTAAAATATATTTAATAGT-A-ATTATGTTAAT-TT-A-TATTTTA-CA
1 ATTATATATTATGATTTTAAAA-A-A-TTAATA-TAAGAATAT-TTAATATTAAGAATTTTATTA
*
64982070 GT
61 -A
* * *
64982072 ATCATATATTATGATTTCAATAAATTAATATAAGAATA-TTAATTATTAAGAATTTTATTAA
1 ATTATATATTATGATTTTAAAAAATTAATATAAGAATATTTAA-TATTAAGAATTTTATTAA
64982133 ATTATATATT
1 ATTATATATT
64982143 TTAATTAAAA
Statistics
Matches: 98, Mismatches: 17, Indels: 30
0.68 0.12 0.21
Matches are distributed among these distances:
57 5 0.05
58 9 0.09
59 27 0.28
60 8 0.08
61 36 0.37
62 12 0.12
63 1 0.01
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (61 bp):
ATTATATATTATGATTTTAAAAAATTAATATAAGAATATTTAATATTAAGAATTTTATTAA
Found at i:64982029 original size:18 final size:17
Alignment explanation
Indices: 64982003--64982037 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
64981993 AATATTAAGA
*
64982003 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
64982020 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
64982038 TTAATAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:64982049 original size:120 final size:120
Alignment explanation
Indices: 64981896--64982179 Score: 446
Period size: 120 Copynumber: 2.4 Consensus size: 120
64981886 TAATTGAAAA
* * *
64981896 TATATATTTT-ATTAAATTATATTTAATAATAATTATGTTAAATTATATTTCATAGTATTATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATA
* *
64981960 TTATGATTTTAAAAAATTCATATAAGAATATTTAA-TATTAAGAATTTTATTAAAT
66 TTATGATTTCAAAAAATTAATATAAGAATA-TTAATTATTAAGAATTTTATTAAAT
* * *
64982015 TATATATTTTAATTAAAATATATTTAATAGTAATTATGTTAATTTATATTTTACAGTATCATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATA
*
64982080 TTATGATTTCAATAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
66 TTATGATTTCAAAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
*
64982135 TATATATTTTAATTAAAATATATTTAATAAAAATTATGTTTAAAT
1 TATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
64982180 ATGATTAAAT
Statistics
Matches: 150, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
119 14 0.09
120 131 0.87
121 5 0.03
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (120 bp):
TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATA
TTATGATTTCAAAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
Found at i:64982151 original size:18 final size:17
Alignment explanation
Indices: 64982123--64982157 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
64982113 ATTATTAAGA
*
64982123 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
64982140 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
64982158 TTAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:64982157 original size:16 final size:16
Alignment explanation
Indices: 64982123--64982177 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
64982113 ATTATTAAGA
64982123 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
64982140 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
64982156 A-TTTAATAAAAAT-T
1 ATTTTAATTAAAATAT
64982170 ATGTTTAA
1 AT-TTTAA
64982178 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:64982402 original size:45 final size:43
Alignment explanation
Indices: 64982303--64982412 Score: 111
Period size: 45 Copynumber: 2.6 Consensus size: 43
64982293 TTTTCCATTA
64982303 TGCTATTACACCTCTATT--AT--ATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
* * ***
64982342 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCA-TACATTCAACCAAACACAAGA-T
*
64982387 TGCTATTACACCTCTAATCCAATACA
1 TGCTATTACACCTCTATTCC-ATACA
64982413 CCTCTAATCC
Statistics
Matches: 56, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
39 16 0.29
41 1 0.02
42 1 0.02
44 15 0.27
45 22 0.39
46 1 0.02
ACGTcount: A:0.35, C:0.27, G:0.05, T:0.33
Consensus pattern (43 bp):
TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
Found at i:64982414 original size:16 final size:16
Alignment explanation
Indices: 64982393--64982428 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
64982383 GATTTGCTAT
64982393 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
64982409 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
64982425 TACA
1 TACA
64982429 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:64985608 original size:28 final size:28
Alignment explanation
Indices: 64985577--64986124 Score: 666
Period size: 28 Copynumber: 20.4 Consensus size: 28
64985567 TAGGGTTTTT
*
64985577 AATTAAGTTAAGTTAGGGTTTTTAATTA
1 AATTAAGTTAGGTTAGGGTTTTTAATTA
*
64985605 AATTAATTTAGGTTAGGGTTTTTAATTA
1 AATTAAGTTAGGTTAGGGTTTTTAATTA
*
64985633 AATTAAATTAGGTTAGGG--TTT--TT-
1 AATTAAGTTAGGTTAGGGTTTTTAATTA
*
64985656 AATTAAGTTAAGTTAGGGTTTTTAATTA
1 AATTAAGTTAGGTTAGGGTTTTTAATTA
*
64985684 AATTAAATTAGGTTAGGG-TTTTAATTA
1 AATTAAGTTAGGTTAGGGTTTTTAATTA
64985711 AATTAAGTTAGGTTAGGGTTTTTAATTA
1 AATTAAGTTAGGTTAGGGTTTTTAATTA
*
64985739 AATTAGGTTATGGTTAGGGTTTTTAATT-
1 AATTAAGTTA-GGTTAGGGTTTTTAATTA
64985767 AATTAAGTTAGGTTAGGGTTTTTAATTA
1 AATTAAGTTAGGTTAGGGTTTTTAATTA
64985795 AATT-AGTTTAGGGTTAGGGTTTTTAATTA
1 AATTAAG-TTA-GGTTAGGGTTTTTAATTA
* * *
64985824 AAATAGGTTAGGGTTAGGGTTTTTAACT-
1 AATTAAGTTA-GGTTAGGGTTTTTAATTA
*
64985852 -A--AA-TTAGGTTAGGGATTTTAATT-
1 AATTAAGTTAGGTTAGGGTTTTTAATTA
*
64985875 -A--AA-TTAGGTTAGGGATTTTAATTA
1 AATTAAGTTAGGTTAGGGTTTTTAATTA
*
64985899 AATTAAATTAGGTTAGGGTTTTTAATTA
1 AATTAAGTTAGGTTAGGGTTTTTAATTA
*
64985927 AATTAAATTAGGTTAGGG--TTT--TT-
1 AATTAAGTTAGGTTAGGGTTTTTAATTA
* *
64985950 AATTAAGTTAAGTTAGGGTTTTTAGTTA
1 AATTAAGTTAGGTTAGGGTTTTTAATTA
*
64985978 AATTAAATTAGGTTAGGGTTTTTAATTA
1 AATTAAGTTAGGTTAGGGTTTTTAATTA
*
64986006 AATTAAATTAGGTTAGGG--TTT--TT-
1 AATTAAGTTAGGTTAGGGTTTTTAATTA
*
64986029 AATTAAGTTAAGTTAGGGTTTTTAATTA
1 AATTAAGTTAGGTTAGGGTTTTTAATTA
*
64986057 AATTAAATTAGGTTAGGGTTTTTAATTA
1 AATTAAGTTAGGTTAGGGTTTTTAATTA
* *
64986085 AGTTAAATTAGGTTAGGGTTTTTAATTA
1 AATTAAGTTAGGTTAGGGTTTTTAATTA
*
64986113 AGTTAAGTTAGG
1 AATTAAGTTAGG
64986125 GTTGTTCTTC
Statistics
Matches: 466, Mismatches: 28, Indels: 52
0.85 0.05 0.10
Matches are distributed among these distances:
23 86 0.18
24 9 0.02
25 11 0.02
26 9 0.02
27 54 0.12
28 238 0.51
29 58 0.12
30 1 0.00
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (28 bp):
AATTAAGTTAGGTTAGGGTTTTTAATTA
Found at i:64985874 original size:18 final size:21
Alignment explanation
Indices: 64985851--64985903 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 21
64985841 GGTTTTTAAC
64985851 TAAATTAGGTTAGGGATTTTAAT
1 TAAATTAGGTTAGGGA-TTT-AT
64985874 TAAATTAGGTTAGGGATTTTAAT
1 TAAATTAGGTTAGGGA-TTT-AT
64985897 TAAATTA
1 TAAATTA
64985904 AATTAGGTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.43
Consensus pattern (21 bp):
TAAATTAGGTTAGGGATTTAT
Found at i:64986125 original size:79 final size:79
Alignment explanation
Indices: 64985577--64986127 Score: 692
Period size: 79 Copynumber: 6.9 Consensus size: 79
64985567 TAGGGTTTTT
* * * *
64985577 AATTAAGTTAAGTTAGGGTTTTTAATTAAATTAATTTAGGTTAGGGTTTTTAATTAAATTAAATT
1 AATTAAATTAGGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAGTT--A--
64985642 AGGTTAGGGTTTTTAATTA
62 A-GTTAGGGTTTTTAATTA
*
64985661 AGTT--A--A-GTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTAATTAAATTAAGTTA
1 AATTAAATTAGGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGG-TTT--TT-AATTAAGTTA
*
64985721 GGTTAGGGTTTTTAATTA
62 AGTTAGGGTTTTTAATTA
** *
64985739 AATTAGGTTATGGTTAGGGTTTTTAATT-AATTAAGTTAGGTTAGGGTTTTTAATTAAATTAGTT
1 AATTAAATTA-GGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATT--A--AG-T
*
64985803 TAGGGTTAGGGTTTTTAATTA
60 TA-AGTTAGGGTTTTTAATTA
* ** * * * *
64985824 AAATAGGTTAGGGTTAGGG--TTT--TT-AACTAAATTAGGTTAGGGATTTTAATTAAATTAGGT
1 AATTAAATTA-GGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAGTTAAGT
*
64985884 TAGGGATTTTAATTA
65 TAGGGTTTTTAATTA
64985899 AATTAAATTAGGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAGTTAAGTT
1 AATTAAATTAGGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAGTTAAGTT
*
64985964 AGGGTTTTTAGTTA
66 AGGGTTTTTAATTA
64985978 AATTAAATTAGGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAGTTAAGTT
1 AATTAAATTAGGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAGTTAAGTT
64986043 AGGGTTTTTAATTA
66 AGGGTTTTTAATTA
*
64986057 AATTAAATTAGGTTAGGGTTTTTAATTAAGTTAAATTAGGTTAGGGTTTTTAATTAAGTTAAGTT
1 AATTAAATTAGGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAGTTAAGTT
64986122 AGGGTT
66 AGGGTT
64986128 GTTCTTCCTC
Statistics
Matches: 420, Mismatches: 26, Indels: 47
0.85 0.05 0.10
Matches are distributed among these distances:
74 8 0.02
75 24 0.06
76 6 0.01
77 1 0.00
78 22 0.05
79 232 0.55
80 6 0.01
81 28 0.07
82 6 0.01
83 30 0.07
84 22 0.05
85 35 0.08
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (79 bp):
AATTAAATTAGGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAGTTAAGTT
AGGGTTTTTAATTA
Found at i:64988104 original size:14 final size:15
Alignment explanation
Indices: 64988087--64988120 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
64988077 AATAATTATC
64988087 TAAAAATA-CATAAA
1 TAAAAATATCATAAA
*
64988101 TAAAAATATCTTAAA
1 TAAAAATATCATAAA
64988116 TAAAA
1 TAAAA
64988121 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAATATCATAAA
Found at i:64988133 original size:14 final size:13
Alignment explanation
Indices: 64988116--64988145 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
64988106 ATATCTTAAA
64988116 TAAAATTTAAAATT
1 TAAAATTT-AAATT
64988130 TAAAATTTAAATT
1 TAAAATTTAAATT
64988143 TAA
1 TAA
64988146 TACTTACCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (13 bp):
TAAAATTTAAATT
Found at i:64988143 original size:6 final size:7
Alignment explanation
Indices: 64988116--64988145 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
64988106 ATATCTTAAA
64988116 TAAAATT
1 TAAAATT
64988123 TAAAATT
1 TAAAATT
64988130 TAAAATT
1 TAAAATT
64988137 T-AAATT
1 TAAAATT
64988143 TAA
1 TAA
64988146 TACTTACCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
TAAAATT
Found at i:64988355 original size:22 final size:22
Alignment explanation
Indices: 64988325--64988366 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
64988315 ATTTGGAGAT
*
64988325 TTTTTGAAGGAAATTGAGAGGA
1 TTTTGGAAGGAAATTGAGAGGA
*
64988347 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAAATTGAGAG
64988367 TTTGAGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (22 bp):
TTTTGGAAGGAAATTGAGAGGA
Found at i:64988374 original size:30 final size:30
Alignment explanation
Indices: 64988338--64988396 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
64988328 TTGAAGGAAA
* *
64988338 TTGAGAGGATTTTGGAAGGAATTTGAGAGT
1 TTGAGAGAATTTTGGAAGGAAATTGAGAGT
64988368 TTGAGAGAATTTTGGAAGGAAATTGAGAG
1 TTGAGAGAATTTTGGAAGGAAATTGAGAG
64988397 AATTTTTGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.34, C:0.00, G:0.36, T:0.31
Consensus pattern (30 bp):
TTGAGAGAATTTTGGAAGGAAATTGAGAGT
Found at i:64988386 original size:52 final size:51
Alignment explanation
Indices: 64988316--64988418 Score: 145
Period size: 52 Copynumber: 2.0 Consensus size: 51
64988306 TTAATATGGA
* * *
64988316 TTTGGAGATTTTTTGAAGGAAATTGAGAGGATTTTGGAA-GGAATTTGAGAG
1 TTTGGAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAACGGAA-TTGAGAG
*
64988367 TTTGAGAGAATTTTGGAAGGAAATTGAGAGAATTTTTGAACGGAATTGAGAG
1 TTTG-GAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAACGGAATTGAGAG
64988419 AATTTTTGAA
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
51 4 0.09
52 38 0.83
53 4 0.09
ACGTcount: A:0.34, C:0.01, G:0.32, T:0.33
Consensus pattern (51 bp):
TTTGGAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAACGGAATTGAGAG
Found at i:64988393 original size:22 final size:22
Alignment explanation
Indices: 64988368--64988437 Score: 115
Period size: 22 Copynumber: 3.2 Consensus size: 22
64988358 ATTTGAGAGT
*
64988368 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTTGAAGGAAA
64988390 TTGAGAGAATTTTTGAACGG-AA
1 TTGAGAGAATTTTTGAA-GGAAA
64988412 TTGAGAGAATTTTTGAAGGAAA
1 TTGAGAGAATTTTTGAAGGAAA
64988434 TTGA
1 TTGA
64988438 TATTGAATTT
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
21 2 0.04
22 41 0.91
23 2 0.04
ACGTcount: A:0.39, C:0.01, G:0.29, T:0.31
Consensus pattern (22 bp):
TTGAGAGAATTTTTGAAGGAAA
Found at i:64997936 original size:17 final size:17
Alignment explanation
Indices: 64997914--64997954 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
64997904 GAACATATAT
64997914 GCAAGCTGCTGAGAGCC
1 GCAAGCTGCTGAGAGCC
64997931 GCAAGCTGCTGAGAGCC
1 GCAAGCTGCTGAGAGCC
64997948 GCAAGCT
1 GCAAGCT
64997955 TACCTTTCCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.24, C:0.29, G:0.34, T:0.12
Consensus pattern (17 bp):
GCAAGCTGCTGAGAGCC
Found at i:64999239 original size:2 final size:2
Alignment explanation
Indices: 64999232--64999260 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
64999222 ATACTCCCAA
64999232 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
64999261 CATGGATTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:65014844 original size:11 final size:11
Alignment explanation
Indices: 65014817--65014859 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
65014807 TGACCTTTCC
65014817 AAGGTATGGG-
1 AAGGTATGGGA
*
65014827 TAGGTATGGGA
1 AAGGTATGGGA
*
65014838 AAGGTATGGGC
1 AAGGTATGGGA
65014849 AAGGTATGGGA
1 AAGGTATGGGA
65014860 TATATTCTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.30, C:0.02, G:0.47, T:0.21
Consensus pattern (11 bp):
AAGGTATGGGA
Found at i:65014856 original size:22 final size:21
Alignment explanation
Indices: 65014817--65014859 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
65014807 TGACCTTTCC
*
65014817 AAGGTATGGGTAGGTATGGGA
1 AAGGTATGGGAAGGTATGGGA
65014838 AAGGTATGGGCAAGGTATGGGA
1 AAGGTATGGG-AAGGTATGGGA
65014860 TATATTCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.30, C:0.02, G:0.47, T:0.21
Consensus pattern (21 bp):
AAGGTATGGGAAGGTATGGGA
Found at i:65018929 original size:18 final size:18
Alignment explanation
Indices: 65018906--65019016 Score: 177
Period size: 18 Copynumber: 6.2 Consensus size: 18
65018896 CCCAACTACT
65018906 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
*
65018924 GTATACGTGAATAGTTCC
1 GTATACGTGAATAGTACC
* *
65018942 GTATATGTGAATAGTATC
1 GTATACGTGAATAGTACC
*
65018960 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
*
65018978 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
65018996 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
65019014 GTA
1 GTA
65019017 AACGGTCGTA
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 85 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:65019574 original size:21 final size:22
Alignment explanation
Indices: 65019548--65019590 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
65019538 TGACCTTTCC
*
65019548 AAGGTATGCG-TAGGTATGGGA
1 AAGGTATGCGCAAGGTATGGGA
*
65019569 AAGGTATGGGCAAGGTATGGGA
1 AAGGTATGCGCAAGGTATGGGA
65019591 TATATTCTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.30, C:0.05, G:0.44, T:0.21
Consensus pattern (22 bp):
AAGGTATGCGCAAGGTATGGGA
Found at i:65019575 original size:11 final size:11
Alignment explanation
Indices: 65019559--65019590 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
65019549 AGGTATGCGT
65019559 AGGTATGGGAA
1 AGGTATGGGAA
*
65019570 AGGTATGGGCA
1 AGGTATGGGAA
65019581 AGGTATGGGA
1 AGGTATGGGA
65019591 TATATTCTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.31, C:0.03, G:0.47, T:0.19
Consensus pattern (11 bp):
AGGTATGGGAA
Found at i:65022442 original size:22 final size:22
Alignment explanation
Indices: 65022414--65022456 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
65022404 GATCCTTAAC
65022414 TTTGAAAGTAATTTAATGAAAA
1 TTTGAAAGTAATTTAATGAAAA
65022436 TTTGAAAGTAATTTAATGAAA
1 TTTGAAAGTAATTTAATGAAA
65022457 TTCAAGCTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (22 bp):
TTTGAAAGTAATTTAATGAAAA
Found at i:65024685 original size:2 final size:2
Alignment explanation
Indices: 65024678--65024702 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
65024668 GTATAAATGC
65024678 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
65024703 GATAAAGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:65024813 original size:24 final size:22
Alignment explanation
Indices: 65024786--65024836 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
65024776 ATATATGCAC
*
65024786 ATATATATATTAAGATATATGG
1 ATATATATAATAAGATATATGG
*
65024808 ATATATATAATAAGATATATAG
1 ATATATATAATAAGATATATGG
65024830 ATATATA
1 ATATATA
65024837 ACTAAATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (22 bp):
ATATATATAATAAGATATATGG
Found at i:65024837 original size:20 final size:21
Alignment explanation
Indices: 65024788--65024846 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 21
65024778 ATATGCACAT
* *
65024788 ATATATATTAAGATATATGGAT
1 ATATATAATAAGATATAT-GAG
65024810 ATATATAATAAGATATAT-AG
1 ATATATAATAAGATATATGAG
65024830 ATATATAACTAA-ATATA
1 ATATATAA-TAAGATATA
65024847 ATATTAATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.41
21 3 0.09
22 17 0.50
ACGTcount: A:0.53, C:0.02, G:0.08, T:0.37
Consensus pattern (21 bp):
ATATATAATAAGATATATGAG
Found at i:65026020 original size:21 final size:21
Alignment explanation
Indices: 65025981--65026020 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
65025971 CAAGTGGGCA
**
65025981 TGGGCGGTGGTGGCAGGTGCT
1 TGGGCGGTGGCAGCAGGTGCT
*
65026002 TGGGCGGTGGCAGCTGGTG
1 TGGGCGGTGGCAGCAGGTG
65026021 TCAGACGCGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.05, C:0.15, G:0.57, T:0.23
Consensus pattern (21 bp):
TGGGCGGTGGCAGCAGGTGCT
Found at i:65026432 original size:44 final size:44
Alignment explanation
Indices: 65026400--65027140 Score: 493
Period size: 44 Copynumber: 16.9 Consensus size: 44
65026390 TCCACTGCCA
65026400 AATACA-G-AGACAAGATCTGCTTTCTTCGATCTACTTCACGCC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCC
* * * *
65026442 AATACATGAAGACAAGATCTACTTTCTGCGATCTACTTCGCCACC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC-ACGCC
*** * * * **
65026487 AATATGGGAAGACAAGATCTGC-GTCGTCGATCCACTTC-CAATC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCAC-GCC
* * * * * * *
65026530 ATTATAAGAAGATAGGACCTG-TTATCTTTGATCTACTTCACGCC
1 AATACATGAAGACAAGATCTGCTT-TCTTCGATCTACTTCACGCC
65026574 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCC
* * * *
65026618 AATACATGAAGACAAGATCTACTTTCTGCGATCTACTTCGCCACC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC-ACGCC
*** * * * **
65026663 AATATGGGAAGACAAGATCTGC-GTCGTCGATCCACTTC-CAATC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCAC-GCC
* * * * * * *
65026706 ATTATAGGAAGATAGGACCTG-TTATCTTTGATCTACTTCACGCC
1 AATACATGAAGACAAGATCTGCTT-TCTTCGATCTACTTCACGCC
* * *
65026750 AATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC-ACGCC
*** * * * **
65026795 AATATGGGAAGACAAGATCTGC-ATCTTGGATCCACTTC-CTATC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCAC-GCC
* * * * * *
65026838 AATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCC
* *
65026882 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC-ACGCC
*** * * * **
65026927 AATATGGGAAGACAAGATCTG-TATCTTGGATCCACTTC-CTATC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCAC-GCC
* * * * * *
65026970 AATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCC
* * *
65027014 AATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC-ACGCC
*** * * * *
65027059 AATATGGGAAGACAAGATCTGC-GTCGTCGATCCACTTC-CTACC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCAC-GCC
* * * * * *
65027102 AATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
65027141 TTGCCCCGGG
Statistics
Matches: 546, Mismatches: 128, Indels: 48
0.76 0.18 0.07
Matches are distributed among these distances:
42 11 0.02
43 96 0.18
44 324 0.59
45 115 0.21
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (44 bp):
AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCC
Found at i:65026700 original size:132 final size:132
Alignment explanation
Indices: 65026592--65027140 Score: 927
Period size: 132 Copynumber: 4.2 Consensus size: 132
65026582 AAGACAAGAT
* *
65026592 CTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
* * * * *
65026657 GCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCAATCATTATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
65026722 AC
131 AC
* *
65026724 CTGTTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
* *
65026789 GCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
65026854 AC
131 AC
*
65026856 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
* * *
65026921 GCCACCAATATGGGAAGACAAGATCTGTATCTTGGATCCACTTCCTATCAATATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
65026986 AC
131 AC
65026988 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
* *
65027053 GCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCTACCAATATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
*
65027118 AT
131 AC
*
65027120 CAGCTATCTTCGATCTACTTC
1 CTGCTATCTTCGATCTACTTC
65027141 TTGCCCCGGG
Statistics
Matches: 396, Mismatches: 21, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 396 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (132 bp):
CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
AC
Found at i:65026701 original size:176 final size:176
Alignment explanation
Indices: 65026400--65026788 Score: 746
Period size: 176 Copynumber: 2.2 Consensus size: 176
65026390 TCCACTGCCA
65026400 AATACA-G-AGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTA
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTA
65026463 CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCAA
66 CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCAA
65026528 TCATTATAAGAAGATAGGACCTGTTATCTTTGATCTACTTCACGCC
131 TCATTATAAGAAGATAGGACCTGTTATCTTTGATCTACTTCACGCC
65026574 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTA
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTA
65026639 CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCAA
66 CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCAA
*
65026704 TCATTATAGGAAGATAGGACCTGTTATCTTTGATCTACTTCACGCC
131 TCATTATAAGAAGATAGGACCTGTTATCTTTGATCTACTTCACGCC
*
65026750 AATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
65026789 GCCACCAATA
Statistics
Matches: 211, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
174 6 0.03
175 1 0.00
176 204 0.97
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (176 bp):
AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTA
CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCAA
TCATTATAAGAAGATAGGACCTGTTATCTTTGATCTACTTCACGCC
Found at i:65027317 original size:45 final size:45
Alignment explanation
Indices: 65027255--65027507 Score: 140
Period size: 45 Copynumber: 5.4 Consensus size: 45
65027245 GATCTGCAAT
*
65027255 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
* * * * * * * *
65027300 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCTGCCATATTTGAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGAT-AGA---G--TTA-TCG-G
*
65027350 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
* *** * * * *
65027395 CTTCAATGTACTCCACTG--TGGT-CAGGGAGGTAAAATCTGCCATCTTTGAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGT-T---ATC---G-G
*
65027445 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
*
65027490 CTTCAATGTACTCCACTG
1 CTTCAATCTACTCCACTG
65027508 TGGTCAGGGA
Statistics
Matches: 148, Mismatches: 38, Indels: 44
0.64 0.17 0.19
Matches are distributed among these distances:
42 19 0.13
43 6 0.04
45 48 0.32
46 7 0.05
47 2 0.01
48 2 0.01
49 7 0.05
50 32 0.22
52 6 0.04
53 19 0.13
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (45 bp):
CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
Found at i:65027419 original size:95 final size:95
Alignment explanation
Indices: 65027253--65027541 Score: 551
Period size: 95 Copynumber: 3.0 Consensus size: 95
65027243 AAGATCTGCA
65027253 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* *
65027318 TAGTCAGGGAGGTAAAATCTGCCATATTTG
66 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
65027348 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
65027413 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
65027443 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
65027508 TGGTCAGGGAGGTAAAATCTGCCATCTTCG
66 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
65027538 ATCT
1 ATCT
65027542 GCTTCGCTGC
Statistics
Matches: 191, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 191 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TGGTCAGGGAGGTAAAATCTGCCATCTTTG
Found at i:65027600 original size:134 final size:134
Alignment explanation
Indices: 65027443--65027718 Score: 500
Period size: 134 Copynumber: 2.1 Consensus size: 134
65027433 GCCATCTTTG
*
65027443 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTA
*
65027508 TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATC
65027573 TGCA-
131 TG-AT
*
65027577 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTATTCCACTA
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTA
*
65027642 TTGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATC
66 TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATC
65027707 TGAT
131 TGAT
65027711 ATCTTCAA
1 ATCTTCAA
65027719 CCAGCTCTGC
Statistics
Matches: 137, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
133 1 0.01
134 136 0.99
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (134 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTA
TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATC
TGAT
Found at i:65027812 original size:86 final size:86
Alignment explanation
Indices: 65027666--65028015 Score: 565
Period size: 86 Copynumber: 4.1 Consensus size: 86
65027656 AAATCTGCCA
* * * *
65027666 TCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATCTGATATCTTCAACCAGCTCTGCTA
1 TCTTCGATCTGCTTCGCTGTC-AATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTA
65027731 CAAACGAGAGAGGCAAGGTTTG
65 CAAACGAGAGAGGCAAGGTTTG
* *
65027753 TCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
*
65027818 AAACGAGAGTGGCAAGGTTTG
66 AAACGAGAGAGGCAAGGTTTG
*
65027839 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
*
65027904 AAACGAGAGTGGCAAGGTTTG
66 AAACGAGAGAGGCAAGGTTTG
* *
65027925 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATAACTTCAACCAGCTCTGCTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
* * *
65027990 GACCGAGAGAGGCAAGGTTTA
66 AAACGAGAGAGGCAAGGTTTG
65028011 TCTTC
1 TCTTC
65028016 AATTTTTACT
Statistics
Matches: 248, Mismatches: 15, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
86 228 0.92
87 20 0.08
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (86 bp):
TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
AAACGAGAGAGGCAAGGTTTG
Found at i:65027875 original size:42 final size:42
Alignment explanation
Indices: 65027741--65027961 Score: 107
Period size: 42 Copynumber: 5.2 Consensus size: 42
65027731 CAAACGAGAG
*
65027741 AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
1 AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
* * * * * * * *
65027783 AGGCAAGATCTGCTATCTTCAACCAGC-TCTACT-ACAA-AC-GAGA
1 AGGCAAGGT-T--TGTCTTCGATCTGCTTC-GCTGTCAATGCAG-GA
*
65027826 GTGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
1 -AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
* * * * * * * *
65027869 AGGCAAGATCTGCTATCTTCAACCAGC-TCTACT-ACAA-AC-GAGA
1 AGGCAAGGT-T--TGTCTTCGATCTGCTTC-GCTGTCAATGCAG-GA
*
65027912 GTGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
1 -AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
65027955 AGGCAAG
1 AGGCAAG
65027962 ATCTGATAAC
Statistics
Matches: 122, Mismatches: 37, Indels: 40
0.61 0.19 0.20
Matches are distributed among these distances:
41 24 0.20
42 33 0.27
43 16 0.13
44 25 0.20
45 24 0.20
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (42 bp):
AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
Found at i:65032142 original size:19 final size:20
Alignment explanation
Indices: 65032118--65032161 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
65032108 CGTGAAAGTC
* *
65032118 TAATGCATATG-ATGCAATG
1 TAATGCAAATGCATGAAATG
65032137 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
65032157 -AATGC
1 TAATGC
65032162 CAAAAGAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.27
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:65034372 original size:24 final size:22
Alignment explanation
Indices: 65034345--65034395 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
65034335 ATATATGCAC
*
65034345 ATATATATATTAAGATATATGG
1 ATATATATAATAAGATATATGG
*
65034367 ATATATATAATAAGATATATAG
1 ATATATATAATAAGATATATGG
65034389 ATATATA
1 ATATATA
65034396 ACTAAATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (22 bp):
ATATATATAATAAGATATATGG
Found at i:65034396 original size:20 final size:21
Alignment explanation
Indices: 65034347--65034405 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 21
65034337 ATATGCACAT
* *
65034347 ATATATATTAAGATATATGGAT
1 ATATATAATAAGATATAT-GAG
65034369 ATATATAATAAGATATAT-AG
1 ATATATAATAAGATATATGAG
65034389 ATATATAACTAA-ATATA
1 ATATATAA-TAAGATATA
65034406 ATATTAATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.41
21 3 0.09
22 17 0.50
ACGTcount: A:0.53, C:0.02, G:0.08, T:0.37
Consensus pattern (21 bp):
ATATATAATAAGATATATGAG
Found at i:65035580 original size:21 final size:21
Alignment explanation
Indices: 65035541--65035580 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
65035531 CAAGTGGGCA
**
65035541 TGGGCGGTGGTGGCAGGTGCT
1 TGGGCGGTGGCAGCAGGTGCT
*
65035562 TGGGCGGTGGCAGCTGGTG
1 TGGGCGGTGGCAGCAGGTG
65035581 TCAGACGCGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.05, C:0.15, G:0.57, T:0.23
Consensus pattern (21 bp):
TGGGCGGTGGCAGCAGGTGCT
Found at i:65035991 original size:44 final size:44
Alignment explanation
Indices: 65035959--65036699 Score: 493
Period size: 44 Copynumber: 16.9 Consensus size: 44
65035949 TCCACTGCCA
65035959 AATACA-G-AGACAAGATCTGCTTTCTTCGATCTACTTCACGCC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCC
* * * *
65036001 AATACATGAAGACAAGATCTACTTTCTGCGATCTACTTCGCCACC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC-ACGCC
*** * * * **
65036046 AATATGGGAAGACAAGATCTGC-GTCGTCGATCCACTTC-CAATC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCAC-GCC
* * * * * * *
65036089 ATTATAAGAAGATAGGACCTG-TTATCTTTGATCTACTTCACGCC
1 AATACATGAAGACAAGATCTGCTT-TCTTCGATCTACTTCACGCC
65036133 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCC
* * * *
65036177 AATACATGAAGACAAGATCTACTTTCTGCGATCTACTTCGCCACC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC-ACGCC
*** * * * **
65036222 AATATGGGAAGACAAGATCTGC-GTCGTCGATCCACTTC-CAATC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCAC-GCC
* * * * * * *
65036265 ATTATAGGAAGATAGGACCTG-TTATCTTTGATCTACTTCACGCC
1 AATACATGAAGACAAGATCTGCTT-TCTTCGATCTACTTCACGCC
* * *
65036309 AATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC-ACGCC
*** * * * **
65036354 AATATGGGAAGACAAGATCTGC-ATCTTGGATCCACTTC-CTATC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCAC-GCC
* * * * * *
65036397 AATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCC
* *
65036441 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC-ACGCC
*** * * * **
65036486 AATATGGGAAGACAAGATCTG-TATCTTGGATCCACTTC-CTATC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCAC-GCC
* * * * * *
65036529 AATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCC
* * *
65036573 AATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC-ACGCC
*** * * * *
65036618 AATATGGGAAGACAAGATCTGC-GTCGTCGATCCACTTC-CTACC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCAC-GCC
* * * * * *
65036661 AATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
65036700 TTGCCCCGGG
Statistics
Matches: 546, Mismatches: 128, Indels: 48
0.76 0.18 0.07
Matches are distributed among these distances:
42 11 0.02
43 96 0.18
44 324 0.59
45 115 0.21
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (44 bp):
AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCC
Found at i:65036259 original size:132 final size:132
Alignment explanation
Indices: 65036151--65036699 Score: 927
Period size: 132 Copynumber: 4.2 Consensus size: 132
65036141 AAGACAAGAT
* *
65036151 CTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
* * * * *
65036216 GCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCAATCATTATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
65036281 AC
131 AC
* *
65036283 CTGTTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
* *
65036348 GCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
65036413 AC
131 AC
*
65036415 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
* * *
65036480 GCCACCAATATGGGAAGACAAGATCTGTATCTTGGATCCACTTCCTATCAATATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
65036545 AC
131 AC
65036547 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
* *
65036612 GCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCTACCAATATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
*
65036677 AT
131 AC
*
65036679 CAGCTATCTTCGATCTACTTC
1 CTGCTATCTTCGATCTACTTC
65036700 TTGCCCCGGG
Statistics
Matches: 396, Mismatches: 21, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 396 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (132 bp):
CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
AC
Found at i:65036260 original size:176 final size:176
Alignment explanation
Indices: 65035959--65036347 Score: 746
Period size: 176 Copynumber: 2.2 Consensus size: 176
65035949 TCCACTGCCA
65035959 AATACA-G-AGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTA
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTA
65036022 CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCAA
66 CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCAA
65036087 TCATTATAAGAAGATAGGACCTGTTATCTTTGATCTACTTCACGCC
131 TCATTATAAGAAGATAGGACCTGTTATCTTTGATCTACTTCACGCC
65036133 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTA
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTA
65036198 CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCAA
66 CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCAA
*
65036263 TCATTATAGGAAGATAGGACCTGTTATCTTTGATCTACTTCACGCC
131 TCATTATAAGAAGATAGGACCTGTTATCTTTGATCTACTTCACGCC
*
65036309 AATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
65036348 GCCACCAATA
Statistics
Matches: 211, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
174 6 0.03
175 1 0.00
176 204 0.97
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (176 bp):
AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTA
CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCAA
TCATTATAAGAAGATAGGACCTGTTATCTTTGATCTACTTCACGCC
Found at i:65036876 original size:45 final size:45
Alignment explanation
Indices: 65036814--65037066 Score: 140
Period size: 45 Copynumber: 5.4 Consensus size: 45
65036804 GATCTGCAAT
*
65036814 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
* * * * * * * *
65036859 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCTGCCATATTTGAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGAT-AGA---G--TTA-TCG-G
*
65036909 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
* *** * * * *
65036954 CTTCAATGTACTCCACTG--TGGT-CAGGGAGGTAAAATCTGCCATCTTTGAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGT-T---ATC---G-G
*
65037004 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
*
65037049 CTTCAATGTACTCCACTG
1 CTTCAATCTACTCCACTG
65037067 TGGTCAGGGA
Statistics
Matches: 148, Mismatches: 38, Indels: 44
0.64 0.17 0.19
Matches are distributed among these distances:
42 19 0.13
43 6 0.04
45 48 0.32
46 7 0.05
47 2 0.01
48 2 0.01
49 7 0.05
50 32 0.22
52 6 0.04
53 19 0.13
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (45 bp):
CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
Found at i:65036978 original size:95 final size:95
Alignment explanation
Indices: 65036812--65037100 Score: 551
Period size: 95 Copynumber: 3.0 Consensus size: 95
65036802 AAGATCTGCA
65036812 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* *
65036877 TAGTCAGGGAGGTAAAATCTGCCATATTTG
66 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
65036907 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
65036972 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
65037002 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
65037067 TGGTCAGGGAGGTAAAATCTGCCATCTTCG
66 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
65037097 ATCT
1 ATCT
65037101 GCTTCGCTGC
Statistics
Matches: 191, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 191 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TGGTCAGGGAGGTAAAATCTGCCATCTTTG
Found at i:65037159 original size:134 final size:134
Alignment explanation
Indices: 65037002--65037277 Score: 509
Period size: 134 Copynumber: 2.1 Consensus size: 134
65036992 GCCATCTTTG
65037002 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
65037067 TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATC
65037132 TGCA-
131 TG-AT
*
65037136 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTATTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
65037201 TTGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATC
66 TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATC
65037266 TGAT
131 TGAT
65037270 ATCTTCAA
1 ATCTTCAA
65037278 CCAGCTCTGC
Statistics
Matches: 138, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
133 1 0.01
134 137 0.99
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (134 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATC
TGAT
Found at i:65037371 original size:86 final size:86
Alignment explanation
Indices: 65037225--65037574 Score: 565
Period size: 86 Copynumber: 4.1 Consensus size: 86
65037215 AAATCTGCCA
* * * *
65037225 TCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATCTGATATCTTCAACCAGCTCTGCTA
1 TCTTCGATCTGCTTCGCTGTC-AATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTA
65037290 CAAACGAGAGAGGCAAGGTTTG
65 CAAACGAGAGAGGCAAGGTTTG
* *
65037312 TCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
*
65037377 AAACGAGAGTGGCAAGGTTTG
66 AAACGAGAGAGGCAAGGTTTG
*
65037398 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
*
65037463 AAACGAGAGTGGCAAGGTTTG
66 AAACGAGAGAGGCAAGGTTTG
* *
65037484 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATAACTTCAACCAGCTCTGCTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
* * *
65037549 GACCGAGAGAGGCAAGGTTTA
66 AAACGAGAGAGGCAAGGTTTG
65037570 TCTTC
1 TCTTC
65037575 AATTTTTACT
Statistics
Matches: 248, Mismatches: 15, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
86 228 0.92
87 20 0.08
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (86 bp):
TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
AAACGAGAGAGGCAAGGTTTG
Found at i:65037434 original size:42 final size:42
Alignment explanation
Indices: 65037300--65037520 Score: 107
Period size: 42 Copynumber: 5.2 Consensus size: 42
65037290 CAAACGAGAG
*
65037300 AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
1 AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
* * * * * * * *
65037342 AGGCAAGATCTGCTATCTTCAACCAGC-TCTACT-ACAA-AC-GAGA
1 AGGCAAGGT-T--TGTCTTCGATCTGCTTC-GCTGTCAATGCAG-GA
*
65037385 GTGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
1 -AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
* * * * * * * *
65037428 AGGCAAGATCTGCTATCTTCAACCAGC-TCTACT-ACAA-AC-GAGA
1 AGGCAAGGT-T--TGTCTTCGATCTGCTTC-GCTGTCAATGCAG-GA
*
65037471 GTGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
1 -AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
65037514 AGGCAAG
1 AGGCAAG
65037521 ATCTGATAAC
Statistics
Matches: 122, Mismatches: 37, Indels: 40
0.61 0.19 0.20
Matches are distributed among these distances:
41 24 0.20
42 33 0.27
43 16 0.13
44 25 0.20
45 24 0.20
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (42 bp):
AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
Found at i:65041695 original size:19 final size:20
Alignment explanation
Indices: 65041671--65041714 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
65041661 CGTGAAAGTC
* *
65041671 TAATGCATATG-ATGCAATG
1 TAATGCAAATGCATGAAATG
65041690 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
65041710 -AATGC
1 TAATGC
65041715 CAAAAGAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.27
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:65043925 original size:24 final size:22
Alignment explanation
Indices: 65043898--65043948 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
65043888 ATATATGCAC
*
65043898 ATATATATATTAAGATATATGG
1 ATATATATAATAAGATATATGG
*
65043920 ATATATATAATAAGATATATAG
1 ATATATATAATAAGATATATGG
65043942 ATATATA
1 ATATATA
65043949 ACTAAATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (22 bp):
ATATATATAATAAGATATATGG
Found at i:65043949 original size:20 final size:21
Alignment explanation
Indices: 65043900--65043958 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 21
65043890 ATATGCACAT
* *
65043900 ATATATATTAAGATATATGGAT
1 ATATATAATAAGATATAT-GAG
65043922 ATATATAATAAGATATAT-AG
1 ATATATAATAAGATATATGAG
65043942 ATATATAACTAA-ATATA
1 ATATATAA-TAAGATATA
65043959 ATATTAATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.41
21 3 0.09
22 17 0.50
ACGTcount: A:0.53, C:0.02, G:0.08, T:0.37
Consensus pattern (21 bp):
ATATATAATAAGATATATGAG
Found at i:65045133 original size:21 final size:21
Alignment explanation
Indices: 65045094--65045133 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
65045084 CAAGTGGGCA
**
65045094 TGGGCGGTGGTGGCAGGTGCT
1 TGGGCGGTGGCAGCAGGTGCT
*
65045115 TGGGCGGTGGCAGCTGGTG
1 TGGGCGGTGGCAGCAGGTG
65045134 TCAGACGCGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.05, C:0.15, G:0.57, T:0.23
Consensus pattern (21 bp):
TGGGCGGTGGCAGCAGGTGCT
Found at i:65045536 original size:44 final size:44
Alignment explanation
Indices: 65045504--65046244 Score: 493
Period size: 44 Copynumber: 16.9 Consensus size: 44
65045494 TCCACTGCCA
65045504 AATACA-G-AGACAAGATCTGCTTTCTTCGATCTACTTCACGCC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCC
* * * *
65045546 AATACATGAAGACAAGATCTACTTTCTGCGATCTACTTCGCCACC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC-ACGCC
*** * * * **
65045591 AATATGGGAAGACAAGATCTGC-GTCGTCGATCCACTTC-CAATC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCAC-GCC
* * * * * * *
65045634 ATTATAAGAAGATAGGACCTG-TTATCTTTGATCTACTTCACGCC
1 AATACATGAAGACAAGATCTGCTT-TCTTCGATCTACTTCACGCC
65045678 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCC
* * * *
65045722 AATACATGAAGACAAGATCTACTTTCTGCGATCTACTTCGCCACC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC-ACGCC
*** * * * **
65045767 AATATGGGAAGACAAGATCTGC-GTCGTCGATCCACTTC-CAATC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCAC-GCC
* * * * * * *
65045810 ATTATAGGAAGATAGGACCTG-TTATCTTTGATCTACTTCACGCC
1 AATACATGAAGACAAGATCTGCTT-TCTTCGATCTACTTCACGCC
* * *
65045854 AATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC-ACGCC
*** * * * **
65045899 AATATGGGAAGACAAGATCTGC-ATCTTGGATCCACTTC-CTATC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCAC-GCC
* * * * * *
65045942 AATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCC
* *
65045986 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC-ACGCC
*** * * * **
65046031 AATATGGGAAGACAAGATCTG-TATCTTGGATCCACTTC-CTATC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCAC-GCC
* * * * * *
65046074 AATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCC
* * *
65046118 AATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC-ACGCC
*** * * * *
65046163 AATATGGGAAGACAAGATCTGC-GTCGTCGATCCACTTC-CTACC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCAC-GCC
* * * * * *
65046206 AATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
65046245 TTGCCCCGGG
Statistics
Matches: 546, Mismatches: 128, Indels: 48
0.76 0.18 0.07
Matches are distributed among these distances:
42 11 0.02
43 96 0.18
44 324 0.59
45 115 0.21
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (44 bp):
AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCC
Found at i:65045804 original size:132 final size:132
Alignment explanation
Indices: 65045696--65046244 Score: 927
Period size: 132 Copynumber: 4.2 Consensus size: 132
65045686 AAGACAAGAT
* *
65045696 CTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
* * * * *
65045761 GCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCAATCATTATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
65045826 AC
131 AC
* *
65045828 CTGTTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
* *
65045893 GCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
65045958 AC
131 AC
*
65045960 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
* * *
65046025 GCCACCAATATGGGAAGACAAGATCTGTATCTTGGATCCACTTCCTATCAATATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
65046090 AC
131 AC
65046092 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
* *
65046157 GCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCTACCAATATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
*
65046222 AT
131 AC
*
65046224 CAGCTATCTTCGATCTACTTC
1 CTGCTATCTTCGATCTACTTC
65046245 TTGCCCCGGG
Statistics
Matches: 396, Mismatches: 21, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 396 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (132 bp):
CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
AC
Found at i:65045805 original size:176 final size:176
Alignment explanation
Indices: 65045504--65045892 Score: 746
Period size: 176 Copynumber: 2.2 Consensus size: 176
65045494 TCCACTGCCA
65045504 AATACA-G-AGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTA
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTA
65045567 CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCAA
66 CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCAA
65045632 TCATTATAAGAAGATAGGACCTGTTATCTTTGATCTACTTCACGCC
131 TCATTATAAGAAGATAGGACCTGTTATCTTTGATCTACTTCACGCC
65045678 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTA
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTA
65045743 CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCAA
66 CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCAA
*
65045808 TCATTATAGGAAGATAGGACCTGTTATCTTTGATCTACTTCACGCC
131 TCATTATAAGAAGATAGGACCTGTTATCTTTGATCTACTTCACGCC
*
65045854 AATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
1 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
65045893 GCCACCAATA
Statistics
Matches: 211, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
174 6 0.03
175 1 0.00
176 204 0.97
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (176 bp):
AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTA
CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCAA
TCATTATAAGAAGATAGGACCTGTTATCTTTGATCTACTTCACGCC
Found at i:65046421 original size:45 final size:45
Alignment explanation
Indices: 65046359--65046611 Score: 140
Period size: 45 Copynumber: 5.4 Consensus size: 45
65046349 GATCTGCAAT
*
65046359 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
* * * * * * * *
65046404 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCTGCCATATTTGAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGAT-AGA---G--TTA-TCG-G
*
65046454 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
* *** * * * *
65046499 CTTCAATGTACTCCACTG--TGGT-CAGGGAGGTAAAATCTGCCATCTTTGAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGT-T---ATC---G-G
*
65046549 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
*
65046594 CTTCAATGTACTCCACTG
1 CTTCAATCTACTCCACTG
65046612 TGGTCAGGGA
Statistics
Matches: 148, Mismatches: 38, Indels: 44
0.64 0.17 0.19
Matches are distributed among these distances:
42 19 0.13
43 6 0.04
45 48 0.32
46 7 0.05
47 2 0.01
48 2 0.01
49 7 0.05
50 32 0.22
52 6 0.04
53 19 0.13
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (45 bp):
CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
Found at i:65046523 original size:95 final size:95
Alignment explanation
Indices: 65046357--65046645 Score: 551
Period size: 95 Copynumber: 3.0 Consensus size: 95
65046347 AAGATCTGCA
65046357 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* *
65046422 TAGTCAGGGAGGTAAAATCTGCCATATTTG
66 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
65046452 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
65046517 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
65046547 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
65046612 TGGTCAGGGAGGTAAAATCTGCCATCTTCG
66 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
65046642 ATCT
1 ATCT
65046646 GCTTCGCTGC
Statistics
Matches: 191, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 191 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TGGTCAGGGAGGTAAAATCTGCCATCTTTG
Found at i:65046704 original size:134 final size:134
Alignment explanation
Indices: 65046547--65046822 Score: 509
Period size: 134 Copynumber: 2.1 Consensus size: 134
65046537 GCCATCTTTG
65046547 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
65046612 TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATC
65046677 TGCA-
131 TG-AT
*
65046681 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTATTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
65046746 TTGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATC
66 TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATC
65046811 TGAT
131 TGAT
65046815 ATCTTCAA
1 ATCTTCAA
65046823 CCAGCTCTGC
Statistics
Matches: 138, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
133 1 0.01
134 137 0.99
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (134 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATC
TGAT
Found at i:65046916 original size:86 final size:86
Alignment explanation
Indices: 65046770--65047119 Score: 565
Period size: 86 Copynumber: 4.1 Consensus size: 86
65046760 AAATCTGCCA
* * * *
65046770 TCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATCTGATATCTTCAACCAGCTCTGCTA
1 TCTTCGATCTGCTTCGCTGTC-AATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTA
65046835 CAAACGAGAGAGGCAAGGTTTG
65 CAAACGAGAGAGGCAAGGTTTG
* *
65046857 TCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
*
65046922 AAACGAGAGTGGCAAGGTTTG
66 AAACGAGAGAGGCAAGGTTTG
*
65046943 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
*
65047008 AAACGAGAGTGGCAAGGTTTG
66 AAACGAGAGAGGCAAGGTTTG
* *
65047029 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATAACTTCAACCAGCTCTGCTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
* * *
65047094 GACCGAGAGAGGCAAGGTTTA
66 AAACGAGAGAGGCAAGGTTTG
65047115 TCTTC
1 TCTTC
65047120 AATTTTTACT
Statistics
Matches: 248, Mismatches: 15, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
86 228 0.92
87 20 0.08
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (86 bp):
TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
AAACGAGAGAGGCAAGGTTTG
Found at i:65046979 original size:42 final size:42
Alignment explanation
Indices: 65046845--65047065 Score: 107
Period size: 42 Copynumber: 5.2 Consensus size: 42
65046835 CAAACGAGAG
*
65046845 AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
1 AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
* * * * * * * *
65046887 AGGCAAGATCTGCTATCTTCAACCAGC-TCTACT-ACAA-AC-GAGA
1 AGGCAAGGT-T--TGTCTTCGATCTGCTTC-GCTGTCAATGCAG-GA
*
65046930 GTGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
1 -AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
* * * * * * * *
65046973 AGGCAAGATCTGCTATCTTCAACCAGC-TCTACT-ACAA-AC-GAGA
1 AGGCAAGGT-T--TGTCTTCGATCTGCTTC-GCTGTCAATGCAG-GA
*
65047016 GTGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
1 -AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
65047059 AGGCAAG
1 AGGCAAG
65047066 ATCTGATAAC
Statistics
Matches: 122, Mismatches: 37, Indels: 40
0.61 0.19 0.20
Matches are distributed among these distances:
41 24 0.20
42 33 0.27
43 16 0.13
44 25 0.20
45 24 0.20
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (42 bp):
AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
Found at i:65071683 original size:21 final size:21
Alignment explanation
Indices: 65071657--65071696 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
65071647 TACGGATTTG
* *
65071657 ATAACAGATTCGAATAAGATC
1 ATAACAGATCCAAATAAGATC
65071678 ATAACAGATCCAAATAAGA
1 ATAACAGATCCAAATAAGA
65071697 AATAATAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.53, C:0.15, G:0.12, T:0.20
Consensus pattern (21 bp):
ATAACAGATCCAAATAAGATC
Found at i:65073685 original size:6 final size:6
Alignment explanation
Indices: 65073674--65073704 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
65073664 TATTAATTAC
65073674 ATGCAG ATGCAG ATGCAG ATGCAG ATTGCAG
1 ATGCAG ATGCAG ATGCAG ATGCAG A-TGCAG
65073705 TGAGTGTCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.79
7 5 0.21
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (6 bp):
ATGCAG
Found at i:65090491 original size:44 final size:45
Alignment explanation
Indices: 65090421--65091104 Score: 628
Period size: 44 Copynumber: 15.5 Consensus size: 45
65090411 GGATGGATTG
* * * *
65090421 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGT
* * * * *
65090465 AGATCGAAGATAGCAGGTCCTATCTTCCTATATTAGTAG-GAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGT
* * * * * *
65090509 GGATCGAAGA-CGCAGATCTTGTCTTCCCATACTGGTGGCGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGT
* * * * *
65090553 AGATCGCAGAAAACAGATCTTGTCTTCATGTATTGG-CGTGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGT
* * * *
65090597 AGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAG-GAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGT
* * * *
65090641 GGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGT
* * *
65090685 AGATCGAAGA-AGGCAAATCTTGTCTTCATGTATTGG-CGTGAAGT
1 AGATCGAAGATA-GCAGATCTTGTCTTCCTATATTGGTCGTGAAGT
* * * *
65090729 AGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAG-GAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGT
* * * * *
65090773 GGATCGAAGAT-GCAAATCTTGTCTTCCCATATTGGTGGCGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGT
* * * *
65090817 AGATCGAAGAAAGCAAATCTTGTCTTCATGTATTGG-CGTGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGT
* * * *
65090861 AGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG-GAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGT
* * * *
65090905 GGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGT
* * *
65090949 AGATC-ACAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGT
1 AGATCGA-AGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGT
* * * * *
65090993 AGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-GAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGT
* * * * * *
65091037 GGATCCAAGATA-CAGATATTGTCTTCCCATACTGGTGGTGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGT
*
65091081 AGATCGAAGAAAGCAGATCTTGTC
1 AGATCGAAGATAGCAGATCTTGTC
65091105 CCTGTATTTG
Statistics
Matches: 507, Mismatches: 114, Indels: 37
0.77 0.17 0.06
Matches are distributed among these distances:
43 105 0.21
44 304 0.60
45 98 0.19
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (45 bp):
AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGT
Found at i:65090658 original size:132 final size:132
Alignment explanation
Indices: 65090421--65091104 Score: 1190
Period size: 132 Copynumber: 5.2 Consensus size: 132
65090411 GGATGGATTG
*
65090421 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCT
1 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCT
* * *
65090486 ATCTTCCTATATTAGTAGGAAGTGGATCGAAGACGCAGATCTTGTCTTCCCATACTGGTGGCGAA
66 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
65090551 GT
131 GT
* *
65090553 AGATCGCAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCT
1 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCT
65090618 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
66 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
65090683 GT
131 GT
* *
65090685 AGATCGAAGAAGGCAAATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCT
1 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCT
*
65090750 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAAATCTTGTCTTCCCATATTGGTGGCGAA
66 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
65090815 GT
131 GT
* * *
65090817 AGATCGAAGAAAGCAAATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCT
1 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCT
65090882 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
66 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
65090947 GT
131 GT
65090949 AGATC-ACAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCC
1 AGATCGA-AGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCC
* * * * * *
65091013 TATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGATATTGTCTTCCCATACTGGTGGTGA
65 TATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGA
65091078 AGT
130 AGT
65091081 AGATCGAAGAAAGCAGATCTTGTC
1 AGATCGAAGAAAGCAGATCTTGTC
65091105 CCTGTATTTG
Statistics
Matches: 528, Mismatches: 22, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
131 1 0.00
132 526 1.00
133 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (132 bp):
AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCT
ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
GT
Found at i:65093106 original size:25 final size:27
Alignment explanation
Indices: 65093076--65093139 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
65093066 TTTTTAATCA
65093076 ATATATCTACATA-CT-TATATTTTTT
1 ATATATCTACATATCTATATATTTTTT
*
65093101 ATATATGCTACA-ATCTATATGTTTTTT
1 ATATAT-CTACATATCTATATATTTTTT
* *
65093128 TTATATATACAT
1 ATATATCTACAT
65093140 GTATATACAC
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
25 7 0.22
26 11 0.34
27 14 0.44
ACGTcount: A:0.33, C:0.11, G:0.03, T:0.53
Consensus pattern (27 bp):
ATATATCTACATATCTATATATTTTTT
Found at i:65093363 original size:26 final size:24
Alignment explanation
Indices: 65093315--65093362 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
65093305 ACATATGCAC
65093315 ATACTTACATTTTTATTTTATATA
1 ATACTTACATTTTTATTTTATATA
*
65093339 ATACTTACAGTTTTT-TTCTATATA
1 ATACTTACA-TTTTTATTTTATATA
65093363 TGTATATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.31, C:0.10, G:0.02, T:0.56
Consensus pattern (24 bp):
ATACTTACATTTTTATTTTATATA
Found at i:65098639 original size:26 final size:25
Alignment explanation
Indices: 65098587--65098648 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 25
65098577 TCTAAAATCA
*
65098587 TAACAAAATTAACAATAAAACAATAG
1 TAACAAAA-TAACAACAAAACAATAG
* * *
65098613 TTATAAAATAACAACAAAATAAGTAG
1 TAACAAAATAACAACAAAACAA-TAG
65098639 TAACAAAATA
1 TAACAAAATA
65098649 GTGAAAAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
25 12 0.41
26 17 0.59
ACGTcount: A:0.65, C:0.10, G:0.05, T:0.21
Consensus pattern (25 bp):
TAACAAAATAACAACAAAACAATAG
Found at i:65107046 original size:129 final size:129
Alignment explanation
Indices: 65106811--65107054 Score: 328
Period size: 129 Copynumber: 1.9 Consensus size: 129
65106801 TCAACAAAGA
* *
65106811 TGAGTCTCATTGATCCTAGCTTCAAAGTTTGCATCGCTACTTCTTCCTTTAAGTCCGATACACAA
1 TGAGCCTCATTGATCCTAGCTTCAAAGTTTGCATCGCTACTTCTTCCTCTAAGTCCGATACACAA
* * **
65106876 TTCACCTTTTCCTTAGATGGAAGCTTCGTCAACGACTCAACAAGCTCCGTAGCTTTCCTAGAAT
66 CTCACCTCTTCCTTAGATGGAAGCCCCGTCAACGACTCAACAAGCTCCGTAGCTTTCCTAGAAT
* * * * * *
65106940 TGAGCCTCATTGGTCTTAGCTTCAATGTTTGCATTGCTACTTCTTCCTCTAAGTTCGATGCACAA
1 TGAGCCTCATTGATCCTAGCTTCAAAGTTTGCATCGCTACTTCTTCCTCTAAGTCCGATACACAA
* ** *
65107005 CTCACCTCTTCCTTA-AGTGGAAGCCCCTTTGATGACTCAACAAGCTCCGT
66 CTCACCTCTTCCTTAGA-TGGAAGCCCCGTCAACGACTCAACAAGCTCCGT
65107055 CGTTGCCTTT
Statistics
Matches: 98, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
128 1 0.01
129 97 0.99
ACGTcount: A:0.23, C:0.28, G:0.16, T:0.34
Consensus pattern (129 bp):
TGAGCCTCATTGATCCTAGCTTCAAAGTTTGCATCGCTACTTCTTCCTCTAAGTCCGATACACAA
CTCACCTCTTCCTTAGATGGAAGCCCCGTCAACGACTCAACAAGCTCCGTAGCTTTCCTAGAAT
Found at i:65109980 original size:84 final size:84
Alignment explanation
Indices: 65109832--65109991 Score: 295
Period size: 84 Copynumber: 1.9 Consensus size: 84
65109822 TTTGATGCTC
65109832 GCTTTTCTCAATCTCAATGGAGTTTTGTTTAAGGATCAAATTTGTTGCTTGATTCAAAAGTGCTT
1 GCTTTTCTCAATCTCAATGGAGTTTTGTTTAAGGATCAAATTTGTTGCTTGATTCAAAAGTGCTT
65109897 TGAAGGTGACCTAATTCCT
66 TGAAGGTGACCTAATTCCT
*
65109916 GCTTTTGTCAATCTCAATGGAGTTTTGTTTAAGGATCAAATTTGTTGCTTGATTCCAAAA-TGCT
1 GCTTTTCTCAATCTCAATGGAGTTTTGTTTAAGGATCAAATTTGTTGCTTGATT-CAAAAGTGCT
65109980 TTGAAGGTGACC
65 TTGAAGGTGACC
65109992 CAAATATTCC
Statistics
Matches: 74, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
84 69 0.93
85 5 0.07
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (84 bp):
GCTTTTCTCAATCTCAATGGAGTTTTGTTTAAGGATCAAATTTGTTGCTTGATTCAAAAGTGCTT
TGAAGGTGACCTAATTCCT
Found at i:65111294 original size:33 final size:33
Alignment explanation
Indices: 65111234--65111297 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
65111224 ATTGTTGACT
*
65111234 TTTTTTTTTTTTAAAGTTGATGGTCAAATTTGA
1 TTTTTTTTTTTTAAAGTTGATGATCAAATTTGA
*
65111267 TTTTTTTTTTTTAAATTTGA-GAATCAAATTT
1 TTTTTTTTTTTTAAAGTTGATG-ATCAAATTT
65111298 AGCTCAAACA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 1 0.04
33 27 0.96
ACGTcount: A:0.27, C:0.03, G:0.11, T:0.59
Consensus pattern (33 bp):
TTTTTTTTTTTTAAAGTTGATGATCAAATTTGA
Found at i:65113985 original size:210 final size:210
Alignment explanation
Indices: 65113597--65114003 Score: 573
Period size: 210 Copynumber: 1.9 Consensus size: 210
65113587 AAGACTGCTC
* * * * * * **
65113597 AGATTTCCAATTGAAATAGGTAGCTCTTTAATGCCCGTCCCATCTAAATAAAGCTCTAGCAGGCA
1 AGATTTCCAATCGAAATAGGTAACTCTTTAATGCCCGTCCCATCAAAACAAAGCTCCAACAAACA
* *
65113662 TTCCATTTTGCCATCAATCTCTGGAAAGCTTTTAAGATTGGAGCAACCTGAAAGAATTAACTTTT
66 TTCCATTTTCCCATCAATCTCTGGAAAGCTTTCAAGATTGGAGCAACCTGAAAGAATTAACTTTT
* * * *
65113727 CAAGAGATCCCATTCCAATTTTGATTGGAAGACTCCTAAGACTTTTGCAGTCTTTTAAATTCAAA
131 CAAGAGATCCCATACCAACTTTGATTGGAAAACTCCTAAGACTTTTGCAGCCTTTTAAATTCAAA
65113792 AGTTCAAGTCTTCTG
196 AGTTCAAGTCTTCTG
* ***
65113807 AGATTTCCGATCGAAGA-AGGTAACTCTTTAATGTTTGTCCCATCAAAACAAAGCTCCAACAAAC
1 AGATTTCCAATCGAA-ATAGGTAACTCTTTAATGCCCGTCCCATCAAAACAAAGCTCCAACAAAC
* *
65113871 ATTCCATTTTCCCATCAATCTCTGGAAAGCTTTCAAGTTTTGAGCAACCTGAAAGAATTAACTTT
65 ATTCCATTTTCCCATCAATCTCTGGAAAGCTTTCAAGATTGGAGCAACCTGAAAGAATTAACTTT
* * * * *
65113936 TCAAGAGATTCCATACCAACTTTGGTTGGAAAACTCCTCATATTTTTGCAGCCTTTTAAATTCAA
130 TCAAGAGATCCCATACCAACTTTGATTGGAAAACTCCTAAGACTTTTGCAGCCTTTTAAATTCAA
65114001 AAG
195 AAG
65114004 CTTAAGCCTT
Statistics
Matches: 171, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
210 170 0.99
211 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.32
Consensus pattern (210 bp):
AGATTTCCAATCGAAATAGGTAACTCTTTAATGCCCGTCCCATCAAAACAAAGCTCCAACAAACA
TTCCATTTTCCCATCAATCTCTGGAAAGCTTTCAAGATTGGAGCAACCTGAAAGAATTAACTTTT
CAAGAGATCCCATACCAACTTTGATTGGAAAACTCCTAAGACTTTTGCAGCCTTTTAAATTCAAA
AGTTCAAGTCTTCTG
Found at i:65118668 original size:24 final size:25
Alignment explanation
Indices: 65118629--65118678 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
65118619 CAGGCAAGCA
*
65118629 CCCAAAAATAGAAAAATTTTTATTT
1 CCCAAAAATAGAAAAATTTTCATTT
65118654 CCCAAAAATAGAAAAATTTTCATTT
1 CCCAAAAATAGAAAAATTTTCATTT
65118679 AGATCCATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.48, C:0.14, G:0.04, T:0.34
Consensus pattern (25 bp):
CCCAAAAATAGAAAAATTTTCATTT
Found at i:65119684 original size:41 final size:41
Alignment explanation
Indices: 65119627--65119809 Score: 296
Period size: 41 Copynumber: 4.5 Consensus size: 41
65119617 GACTTTTCGG
65119627 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
65119668 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
* * * *
65119709 GGGATTTAGCGGTGCTTTTATTTAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
* *
65119750 GGGATTTAGTGGCGTTTTTA-GTAAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGT-AAGCGCCGCTAATGTTCT
65119791 GGGCTTTAGCGGCGTTTTT
1 GGGCTTTAGCGGCGTTTTT
65119810 GTTGATGCGC
Statistics
Matches: 131, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 1 0.01
41 130 0.99
ACGTcount: A:0.15, C:0.17, G:0.30, T:0.38
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
Found at i:65120266 original size:23 final size:23
Alignment explanation
Indices: 65120240--65120320 Score: 71
Period size: 23 Copynumber: 3.5 Consensus size: 23
65120230 ATAGTATGTA
65120240 GTTTAAGGGTTTTATAGTTTAAG
1 GTTTAAGGGTTTTATAGTTTAAG
*
65120263 GTTTAA-TGTTTACTATAGTATGT-A-
1 GTTTAAGGGTTT--TATAGT-T-TAAG
* *
65120287 GTTTAAGGGTTTCATAGTTTATG
1 GTTTAAGGGTTTTATAGTTTAAG
65120310 GTTT-AGGGTTT
1 GTTTAAGGGTTT
65120321 GTTATATTGG
Statistics
Matches: 47, Mismatches: 4, Indels: 15
0.71 0.06 0.23
Matches are distributed among these distances:
21 1 0.02
22 12 0.26
23 15 0.32
24 12 0.26
25 6 0.13
26 1 0.02
ACGTcount: A:0.23, C:0.02, G:0.25, T:0.49
Consensus pattern (23 bp):
GTTTAAGGGTTTTATAGTTTAAG
Found at i:65120356 original size:22 final size:21
Alignment explanation
Indices: 65120331--65120371 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
65120321 GTTATATTGG
65120331 GTTTGTGA-TTTAGTGTTTTAAA
1 GTTTG-GAGTTTAGT-TTTTAAA
65120353 GTTTGGAGTTTAGTTTTTA
1 GTTTGGAGTTTAGTTTTTA
65120372 TAGTCAGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.20, C:0.00, G:0.24, T:0.56
Consensus pattern (21 bp):
GTTTGGAGTTTAGTTTTTAAA
Found at i:65122913 original size:47 final size:47
Alignment explanation
Indices: 65122844--65122973 Score: 224
Period size: 47 Copynumber: 2.8 Consensus size: 47
65122834 TTAATGTAAT
65122844 TATTTTGCTGATGTTTAAGGAAATTGTTGATTCTTTTTATAAAACTG
1 TATTTTGCTGATGTTTAAGGAAATTGTTGATTCTTTTTATAAAACTG
* *
65122891 TATTTTGCTGATGTTTAAGGAAATTGTTGGTTCTATTTATAAAACTG
1 TATTTTGCTGATGTTTAAGGAAATTGTTGATTCTTTTTATAAAACTG
* *
65122938 TATTTTGCTGATGTTTAAGGAAATTGCTGATGCTTT
1 TATTTTGCTGATGTTTAAGGAAATTGTTGATTCTTT
65122974 AATTGTATTT
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 77 1.00
ACGTcount: A:0.26, C:0.07, G:0.19, T:0.48
Consensus pattern (47 bp):
TATTTTGCTGATGTTTAAGGAAATTGTTGATTCTTTTTATAAAACTG
Found at i:65124304 original size:29 final size:29
Alignment explanation
Indices: 65124262--65124320 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
65124252 TAAATCTTCT
65124262 TCCATTTGTCAACTATTTCATTTCCAAAA
1 TCCATTTGTCAACTATTTCATTTCCAAAA
65124291 TCCATTTGTCAACTATTTCATTTCCAAAA
1 TCCATTTGTCAACTATTTCATTTCCAAAA
65124320 T
1 T
65124321 ATATTTTGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.42
Consensus pattern (29 bp):
TCCATTTGTCAACTATTTCATTTCCAAAA
Found at i:65124479 original size:9 final size:9
Alignment explanation
Indices: 65124448--65124504 Score: 57
Period size: 9 Copynumber: 6.7 Consensus size: 9
65124438 TAAAAGTTCA
65124448 AATTT-CAT
1 AATTTACAT
* *
65124456 AACTTACGT
1 AATTTACAT
*
65124465 ATTTTACAT
1 AATTTACAT
65124474 AATTTACAT
1 AATTTACAT
65124483 AA-TT-CAT
1 AATTTACAT
*
65124490 AATTTACAA
1 AATTTACAT
65124499 AATTTA
1 AATTTA
65124505 AATATATAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
7 5 0.13
8 8 0.21
9 26 0.67
ACGTcount: A:0.42, C:0.12, G:0.02, T:0.44
Consensus pattern (9 bp):
AATTTACAT
Found at i:65124492 original size:16 final size:16
Alignment explanation
Indices: 65124471--65124502 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
65124461 ACGTATTTTA
*
65124471 CATAATTTACATAATT
1 CATAATTTACAAAATT
65124487 CATAATTTACAAAATT
1 CATAATTTACAAAATT
65124503 TAAATATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (16 bp):
CATAATTTACAAAATT
Found at i:65124655 original size:12 final size:12
Alignment explanation
Indices: 65124597--65124666 Score: 63
Period size: 12 Copynumber: 6.0 Consensus size: 12
65124587 CATAATATCC
*
65124597 TAACTTACATAG
1 TAACTTACATAA
* *
65124609 TATCGTACATAA
1 TAACTTACATAA
*
65124621 AAACTTACA-AA
1 TAACTTACATAA
65124632 -AACTTACATAA
1 TAACTTACATAA
*
65124643 TAACCTACATAA
1 TAACTTACATAA
* *
65124655 TACCTTATATAA
1 TAACTTACATAA
65124667 CAATACATAA
Statistics
Matches: 46, Mismatches: 10, Indels: 4
0.77 0.17 0.07
Matches are distributed among these distances:
10 8 0.17
11 4 0.09
12 34 0.74
ACGTcount: A:0.49, C:0.19, G:0.03, T:0.30
Consensus pattern (12 bp):
TAACTTACATAA
Found at i:65124734 original size:9 final size:9
Alignment explanation
Indices: 65124720--65125589 Score: 910
Period size: 9 Copynumber: 95.8 Consensus size: 9
65124710 CACAAAAACA
65124720 ATAACTTAC
1 ATAACTTAC
65124729 ATAACTTAC
1 ATAACTTAC
*
65124738 ATAAACTTGC
1 AT-AACTTAC
* *
65124748 ATAAATTAA
1 ATAACTTAC
*
65124757 ATAACTTGC
1 ATAACTTAC
* *
65124766 ATAAATTAA
1 ATAACTTAC
65124775 ATAACTTAC
1 ATAACTTAC
65124784 ATAACTTAC
1 ATAACTTAC
*
65124793 ATAACCTAC
1 ATAACTTAC
65124802 ATAACTTAC
1 ATAACTTAC
*
65124811 ATAAATTA-
1 ATAACTTAC
65124819 AGTAACTTTAC
1 A-TAAC-TTAC
**
65124830 GGAACTTAC
1 ATAACTTAC
65124839 ATAACTTAC
1 ATAACTTAC
*
65124848 ATAACCTAC
1 ATAACTTAC
65124857 ATAACTTAC
1 ATAACTTAC
* *
65124866 GTAAATTA-
1 ATAACTTAC
65124874 AGTAACTTAC
1 A-TAACTTAC
65124884 ATAACTTAC
1 ATAACTTAC
*
65124893 ATAACCTAC
1 ATAACTTAC
* * *
65124902 ATAAGTAAA
1 ATAACTTAC
65124911 ATAACTTAC
1 ATAACTTAC
65124920 ATAACTTAC
1 ATAACTTAC
*
65124929 ATAACCTAC
1 ATAACTTAC
65124938 ATAACTTAC
1 ATAACTTAC
65124947 ATAACTTAC
1 ATAACTTAC
*
65124956 ATAAACTTGC
1 AT-AACTTAC
* *
65124966 ATAAATTAA
1 ATAACTTAC
65124975 ATAACTTAC
1 ATAACTTAC
*
65124984 ATAACGTAC
1 ATAACTTAC
* *
65124993 ATAAATTAA
1 ATAACTTAC
65125002 ATAACTTAC
1 ATAACTTAC
65125011 ATAACTTAC
1 ATAACTTAC
*
65125020 ATAAATTA-
1 ATAACTTAC
65125028 AGTAACTTAC
1 A-TAACTTAC
65125038 ATAACTTAC
1 ATAACTTAC
*
65125047 ATAAACTTGC
1 AT-AACTTAC
* *
65125057 ATAAATTAA
1 ATAACTTAC
65125066 ATAACTTAC
1 ATAACTTAC
* *
65125075 GTAAATTA-
1 ATAACTTAC
65125083 AGTAACTTAC
1 A-TAACTTAC
65125093 ATAACTTAC
1 ATAACTTAC
*
65125102 ATAACCTAC
1 ATAACTTAC
* * *
65125111 ATAAGTAAA
1 ATAACTTAC
65125120 ATAACTTAC
1 ATAACTTAC
65125129 ATAACTTAC
1 ATAACTTAC
*
65125138 ATAACCTAC
1 ATAACTTAC
65125147 ATAACTTAC
1 ATAACTTAC
65125156 ATAACTTAC
1 ATAACTTAC
*
65125165 ATAAACTTGC
1 AT-AACTTAC
* *
65125175 ATAAATTAA
1 ATAACTTAC
65125184 ATAACTTAC
1 ATAACTTAC
65125193 ATAACTTAC
1 ATAACTTAC
*
65125202 ATAACGTAC
1 ATAACTTAC
* *
65125211 ATAAATTAA
1 ATAACTTAC
65125220 ATAACTTAC
1 ATAACTTAC
65125229 ATAACTTAC
1 ATAACTTAC
*
65125238 ATAAATTA-
1 ATAACTTAC
65125246 AGTAACTTAC
1 A-TAACTTAC
65125256 ATAACTTAC
1 ATAACTTAC
*
65125265 ATAAACTTGC
1 AT-AACTTAC
* *
65125275 ATAAATTAA
1 ATAACTTAC
65125284 ATAACTTAC
1 ATAACTTAC
* *
65125293 GTAAATTA-
1 ATAACTTAC
65125301 AGTAACTTAC
1 A-TAACTTAC
65125311 ATAACTTAC
1 ATAACTTAC
*
65125320 ATAACCTAC
1 ATAACTTAC
* * *
65125329 ATAAGTAAA
1 ATAACTTAC
65125338 ATAACTTAC
1 ATAACTTAC
65125347 ATAACTTAC
1 ATAACTTAC
*
65125356 ATAACCTAC
1 ATAACTTAC
65125365 ATAACTTAC
1 ATAACTTAC
* *
65125374 GTAAATTA-
1 ATAACTTAC
65125382 AGTAACTTAC
1 A-TAACTTAC
65125392 ATAACTTAC
1 ATAACTTAC
*
65125401 ATAACCTAC
1 ATAACTTAC
* * *
65125410 ATAAGTAAA
1 ATAACTTAC
65125419 ATAACTTAC
1 ATAACTTAC
65125428 ATAACTTAC
1 ATAACTTAC
*
65125437 ATAACCTAC
1 ATAACTTAC
65125446 ATAACTTAC
1 ATAACTTAC
65125455 ATAACTTAC
1 ATAACTTAC
*
65125464 ATAAACTTGC
1 AT-AACTTAC
* *
65125474 ATAAATTAA
1 ATAACTTAC
65125483 ATAACTTAC
1 ATAACTTAC
65125492 ATAACTTAC
1 ATAACTTAC
*
65125501 ATAACGTAC
1 ATAACTTAC
* *
65125510 ATAAATTAA
1 ATAACTTAC
65125519 ATAACTTAC
1 ATAACTTAC
*
65125528 ATCACTTAC
1 ATAACTTAC
*
65125537 ATAAATTA-
1 ATAACTTAC
65125545 AGTAACTTAC
1 A-TAACTTAC
65125555 ATAACTTAC
1 ATAACTTAC
*
65125564 ATAAACTTGC
1 AT-AACTTAC
* *
65125574 ATAAATTAA
1 ATAACTTAC
65125583 ATAACTT
1 ATAACTT
65125590 GGTCTTTTTC
Statistics
Matches: 698, Mismatches: 139, Indels: 48
0.79 0.16 0.05
Matches are distributed among these distances:
8 4 0.01
9 625 0.90
10 69 0.10
ACGTcount: A:0.48, C:0.18, G:0.03, T:0.31
Consensus pattern (9 bp):
ATAACTTAC
Found at i:65124825 original size:100 final size:100
Alignment explanation
Indices: 65124720--65125540 Score: 728
Period size: 100 Copynumber: 8.3 Consensus size: 100
65124710 CACAAAAACA
* * *
65124720 ATAACTTACATAACTTACATAAACTTGCATAAATTAAAT-AACTTGCATAAATTAAATAACTTAC
1 ATAACTTACATAACTTACAT-AACTTACATAACTTACATAAACTTGCATAAATTAAATAACTTAC
* *
65124784 ATAACTTACATAACCTACATAACTTACATAAATTA-
65 ATAACTTACATAACCTACATAACTTAAATAACTTAC
** * * * *
65124819 AGTAACTTTACGGAACTTACATAACTTACATAACCTACAT-AACTTACGTAAATTAAGTAACTTA
1 A-TAAC-TTACATAACTTACATAACTTACATAACTTACATAAACTTGCATAAATTAAATAACTTA
* *
65124883 CATAACTTACATAACCTACATAAGTAAAATAACTTAC
64 CATAACTTACATAACCTACATAACTTAAATAACTTAC
*
65124920 ATAACTTACATAACCTACATAACTTACATAACTTACATAAACTTGCATAAATTAAATAACTTACA
1 ATAACTTACATAACTTACATAACTTACATAACTTACATAAACTTGCATAAATTAAATAACTTACA
*
65124985 TAACGTAC---A--T--A-AA-TTAAATAACTTAC
66 TAACTTACATAACCTACATAACTTAAATAACTTAC
*
65125011 ATAACTTACATAAATTA-AGTAACTTACATAACTTACATAAACTTGCATAAATTAAATAACTTAC
1 ATAACTTACATAACTTACA-TAACTTACATAACTTACATAAACTTGCATAAATTAAATAACTTAC
* * * * *
65125075 GTAAATTA-AGTAACTTACATAACTTACATAACCTAC
65 ATAACTTACA-TAACCTACATAACTTAAATAACTTAC
* * * * * * * *
65125111 ATAAGTAAAATAACTTACATAACTTACATAACCTACAT-AACTTACATAACTTACATAAACTTGC
1 ATAACTTACATAACTTACATAACTTACATAACTTACATAAACTTGCATAAATTAAAT-AACTTAC
* * * * *
65125175 ATAAATTAAATAACTTACATAACTTACATAACGTAC
65 ATAACTTACATAACCTACATAACTTAAATAACTTAC
* * * * * * *
65125211 ATAAATTAAATAACTTACATAACTTACATAAATTA-AGT-AACTTACATAACTTACATAAACTTG
1 ATAACTTACATAACTTACATAACTTACATAACTTACA-TAAACTTGCATAAATTAAAT-AACTTA
* * * * * *
65125274 CATAAATTAAATAACTTACGTAAATTAAGTAACTTAC
64 CATAACTTACATAACCTACATAACTTAAATAACTTAC
* * * * * ** * *
65125311 ATAACTTACATAACCTACATAAGTAAAATAACTTACAT-AACTTACATAACCTACATAACTTACG
1 ATAACTTACATAACTTACATAACTTACATAACTTACATAAACTTGCATAAATTAAATAACTTACA
* * * *
65125375 TAAATTA-AGTAACTTACATAACTTACATAACCTAC
66 TAACTTACA-TAACCTACATAACTTAAATAACTTAC
* * * * * * * *
65125410 ATAAGTAAAATAACTTACATAACTTACATAACCTACAT-AACTTACATAACTTACATAAACTTGC
1 ATAACTTACATAACTTACATAACTTACATAACTTACATAAACTTGCATAAATTAAAT-AACTTAC
* * * * *
65125474 ATAAATTAAATAACTTACATAACTTACATAACGTAC
65 ATAACTTACATAACCTACATAACTTAAATAACTTAC
* * *
65125510 ATAAATTAAATAACTTACATCACTTACATAA
1 ATAACTTACATAACTTACATAACTTACATAA
65125541 ATTAAGTAAC
Statistics
Matches: 620, Mismatches: 79, Indels: 45
0.83 0.11 0.06
Matches are distributed among these distances:
90 1 0.00
91 77 0.12
92 2 0.00
93 1 0.00
94 1 0.00
95 1 0.00
96 1 0.00
97 1 0.00
98 2 0.00
99 129 0.21
100 386 0.62
101 18 0.03
ACGTcount: A:0.48, C:0.18, G:0.03, T:0.31
Consensus pattern (100 bp):
ATAACTTACATAACTTACATAACTTACATAACTTACATAAACTTGCATAAATTAAATAACTTACA
TAACTTACATAACCTACATAACTTAAATAACTTAC
Found at i:65128024 original size:66 final size:66
Alignment explanation
Indices: 65127954--65128089 Score: 218
Period size: 66 Copynumber: 2.1 Consensus size: 66
65127944 GACCACAGTT
* * *
65127954 GAGGTTCAAAAGAAATATGAAGAACTCCAGCTACAACTTAGAGCAGATGCGGCAGCGAGAGAAGC
1 GAGGTTCAAAAGAAATATGAAGAACTCCAGCGACAACTTAAAGCAGATGCGGCAGCCAGAGAAGC
65128019 A
66 A
* * *
65128020 GAGGTTCAAAGGAAATATGAAGAACTCCAGCGACAACTTAAAGCTGATGCGGCATCCAGAGAAGC
1 GAGGTTCAAAAGAAATATGAAGAACTCCAGCGACAACTTAAAGCAGATGCGGCAGCCAGAGAAGC
65128085 A
66 A
65128086 GAGG
1 GAGG
65128090 CTGCAGCGAG
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.40, C:0.18, G:0.28, T:0.14
Consensus pattern (66 bp):
GAGGTTCAAAAGAAATATGAAGAACTCCAGCGACAACTTAAAGCAGATGCGGCAGCCAGAGAAGC
A
Found at i:65128442 original size:43 final size:43
Alignment explanation
Indices: 65128390--65128527 Score: 156
Period size: 43 Copynumber: 3.2 Consensus size: 43
65128380 AACCCCAAAA
* * *
65128390 TTAGTGGCGTTT-TTTAAAAAAGCGCTGCTAAAGAACAT-TAGCT
1 TTAGCGGCGTTTGTTT-AAAAAGCGCCGCTAAAGAACATGT-TCT
* *
65128433 TTAGCGGCGTTTGTGTT-AGAAGCGCCGCTGAAGAACATGTTCT
1 TTAGCGGCGTTTGT-TTAAAAAGCGCCGCTAAAGAACATGTTCT
* * *
65128476 TCAGCGGCGTTTGTGTAGAAAGCGCCGCTAAAGAACATGTTCT
1 TTAGCGGCGTTTGTTTAAAAAGCGCCGCTAAAGAACATGTTCT
65128519 TTAGCGGCG
1 TTAGCGGCG
65128528 CTTTTAAAAA
Statistics
Matches: 80, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
42 1 0.01
43 75 0.94
44 2 0.03
45 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (43 bp):
TTAGCGGCGTTTGTTTAAAAAGCGCCGCTAAAGAACATGTTCT
Found at i:65130211 original size:41 final size:41
Alignment explanation
Indices: 65130154--65130236 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
65130144 AATGAACTCA
65130154 AACCAAAAAACAAAGGCAACATCAAAGCCATAGAATTTGTC
1 AACCAAAAAACAAAGGCAACATCAAAGCCATAGAATTTGTC
65130195 AACCAAAAAACAAAGGCAACATCAAAGCCATAGAATTTGTC
1 AACCAAAAAACAAAGGCAACATCAAAGCCATAGAATTTGTC
65130236 A
1 A
65130237 TTCCTCTTTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.52, C:0.22, G:0.12, T:0.14
Consensus pattern (41 bp):
AACCAAAAAACAAAGGCAACATCAAAGCCATAGAATTTGTC
Found at i:65131180 original size:32 final size:32
Alignment explanation
Indices: 65131122--65131183 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
65131112 TGTTGACTTT
*
65131122 TTTTTTTTTTTAAAGTTGATGGTCAAATTTGA
1 TTTTTTTTTTTAAAGTTGATGATCAAATTTGA
*
65131154 TTTTTTTTTTTAAATTTGA-GAATCAAATTT
1 TTTTTTTTTTTAAAGTTGATG-ATCAAATTT
65131184 AGCTCAAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 1 0.04
32 26 0.96
ACGTcount: A:0.27, C:0.03, G:0.11, T:0.58
Consensus pattern (32 bp):
TTTTTTTTTTTAAAGTTGATGATCAAATTTGA
Found at i:65140061 original size:16 final size:16
Alignment explanation
Indices: 65140040--65140083 Score: 88
Period size: 16 Copynumber: 2.8 Consensus size: 16
65140030 TCGAATTATA
65140040 TGGATAATTTATTTTT
1 TGGATAATTTATTTTT
65140056 TGGATAATTTATTTTT
1 TGGATAATTTATTTTT
65140072 TGGATAATTTAT
1 TGGATAATTTAT
65140084 GTCAAACCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.27, C:0.00, G:0.14, T:0.59
Consensus pattern (16 bp):
TGGATAATTTATTTTT
Found at i:65142829 original size:18 final size:18
Alignment explanation
Indices: 65142806--65142847 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
65142796 TTAATTACAG
*
65142806 TAATTAATAAAATAAATA
1 TAATTAATAAAATAAAAA
*
65142824 TAATTAATGAAATAAAAA
1 TAATTAATAAAATAAAAA
65142842 TAATTA
1 TAATTA
65142848 GATGTACATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (18 bp):
TAATTAATAAAATAAAAA
Found at i:65143541 original size:21 final size:21
Alignment explanation
Indices: 65143515--65143557 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
65143505 GGTTCGCTGT
*
65143515 ATTGGATTAGAGGTGTATTGG
1 ATTGGATTAGAGGTGTAATGG
65143536 ATTGGATTAGAGGTGTAATGG
1 ATTGGATTAGAGGTGTAATGG
65143557 A
1 A
65143558 ATAGAGGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (21 bp):
ATTGGATTAGAGGTGTAATGG
Found at i:65143557 original size:16 final size:16
Alignment explanation
Indices: 65143538--65143570 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
65143528 TGTATTGGAT
*
65143538 TGGATTAGAGGTGTAA
1 TGGAATAGAGGTGTAA
65143554 TGGAATAGAGGTGTAA
1 TGGAATAGAGGTGTAA
65143570 T
1 T
65143571 AGCAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.30
Consensus pattern (16 bp):
TGGAATAGAGGTGTAA
Found at i:65143615 original size:45 final size:44
Alignment explanation
Indices: 65143549--65143643 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
65143539 GGATTAGAGG
* *
65143549 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
65143594 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
65143638 TGTAAT
1 TGTAAT
65143644 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:65143832 original size:18 final size:17
Alignment explanation
Indices: 65143811--65143845 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
65143801 TTATTATTTA
*
65143811 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
65143829 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
65143846 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:65143839 original size:28 final size:27
Alignment explanation
Indices: 65143769--65143841 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
65143759 TTTACTATCA
*
65143769 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
65143797 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
65143824 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
65143842 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:65143932 original size:144 final size:147
Alignment explanation
Indices: 65143730--65144001 Score: 487
Period size: 144 Copynumber: 1.9 Consensus size: 147
65143720 ATTGTTATTG
65143730 TTATTGTTATTTAAATTTTAATAAGATTATTTACTATCAAAAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTA--TACTATCAAAAATAAATAATTTAATCATATTTAA
*
65143795 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
64 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
65143860 AGAAATTTGTTTTGGTAAA
129 AGAAATTTGTTTTGGTAAA
*
65143879 TTATT-TTATTTAAATTTTAATAAGATTA-A-TATCAATAATAAATAATTTAATCATATTTAAAC
1 TTATTGTTATTTAAATTTTAATAAGATTATACTATCAAAAATAAATAATTTAATCATATTTAAAC
65143941 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
65144002 ATATTCTTAT
Statistics
Matches: 121, Mismatches: 2, Indels: 5
0.95 0.02 0.04
Matches are distributed among these distances:
144 92 0.76
145 1 0.01
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.47
Consensus pattern (147 bp):
TTATTGTTATTTAAATTTTAATAAGATTATACTATCAAAAATAAATAATTTAATCATATTTAAAC
ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAG
AAATTTGTTTTGGTAAA
Found at i:65143976 original size:18 final size:17
Alignment explanation
Indices: 65143955--65143989 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
65143945 TTATTATTAA
*
65143955 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
65143973 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
65143990 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:65144033 original size:54 final size:54
Alignment explanation
Indices: 65143975--65144153 Score: 128
Period size: 55 Copynumber: 3.1 Consensus size: 54
65143965 ATTAAAATAT
*
65143975 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
** * * * * *
65144029 ATAATATATGATACTGTAAAATAT-AAAATAACATAATTATTATTAAATAT-AATATAATTAAAA
1 ATAAT-T-T-A-A---TAAAAT-TCTTAATAA-TTAA-TATTCTT--ATATGAAT-TTACTCAAA
*
65144092 TAT
53 -AC
*
65144095 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
65144149 ATAAT
1 ATAAT
65144154 ATATGATTAT
Statistics
Matches: 91, Mismatches: 18, Indels: 32
0.65 0.13 0.23
Matches are distributed among these distances:
54 10 0.11
55 11 0.12
56 4 0.04
57 7 0.08
58 5 0.05
59 11 0.12
61 11 0.12
62 5 0.05
63 7 0.08
64 4 0.04
65 11 0.12
66 5 0.05
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (54 bp):
ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
Found at i:65144035 original size:61 final size:61
Alignment explanation
Indices: 65143970--65144157 Score: 190
Period size: 61 Copynumber: 3.1 Consensus size: 61
65143960 TTTTAATTAA
*
65143970 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * * * * * *
65144031 AATATATGATACT-GTAAAA-T-ATAA-AATAACATAATTATTAT-TAAATATAAT-ATAATTAA
1 AATATATAAT-TTAATAAAATTCTTAATAATTA-AT-ATTCTTATATGAATTTACTCA-AATCAT
65144090 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
65144151 AATATAT
1 AATATAT
65144158 GATTATAACT
Statistics
Matches: 94, Mismatches: 23, Indels: 20
0.69 0.17 0.15
Matches are distributed among these distances:
58 6 0.06
59 29 0.31
60 16 0.17
61 37 0.39
62 6 0.06
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
Found at i:65144068 original size:120 final size:120
Alignment explanation
Indices: 65143938--65144160 Score: 419
Period size: 120 Copynumber: 1.9 Consensus size: 120
65143928 ATCATATTTA
* *
65143938 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
65144003 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
65144058 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
65144123 TATTCTTATATGAATTTACTCAAATCATAATATATGAT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGAT
65144161 TATAACTAAT
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 100 1.00
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
Done.