Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 222 of 240
Found at i:66886828 original size:71 final size:68
Alignment explanation
Indices: 66886736--66887042 Score: 239
Period size: 71 Copynumber: 4.3 Consensus size: 68
66886726 AAACTCAACA
66886736 TGTTTTCAAAAATTC-CGGTGTTTCAAAAATTTACGTGTTTTCAAAA-TTC-TAGTGATTCAAAA
1 TGTTTTCAAAAATTCTC-GTGTTTCAAAAATTT-CGTGTTTTCAAAATTTCATA-T-ATTCAAAA
66886798 AGTTTTCG
62 A-TTTTCG
* * * *
66886806 TGTTTTCTAAAAATTTTTGTGTTTCAAAAATTTTCGCGTTTTCAAATATTTTCATATTTTCAAAA
1 TGTTTTC-AAAAATTCTCGTGTTTCAAAAA-TTTCGTGTTTTCAAA-A-TTTCATATATTCAAAA
66886871 ATTTTCG
62 ATTTTCG
* * **
66886878 TGTTTTCAACAATTCTCGTGTTTCAAAAATTTCAGTGTTTTAAAAAATTTTGCACT-T-TAAAAA
1 TGTTTTCAAAAATTCTCGTGTTTCAAAAATTTC-GTGTTTT-CAAAA-TTT-CA-TATATTCAAA
* *
66886941 AAATTTCT
61 AATTTTCG
* * *** *
66886949 TGTGTTTCAAAAATTGTCGTGTTTCAAAAATCTTCGTGTTTCCAAAAATTTTCGGGTTTTCAAAA
1 TGT-TTTCAAAAATTCTCGTGTTTCAAAAAT-TTCGTGTTTTC-AAAA-TTTCATATATTCAAAA
*
66887014 ATTCTCG
62 ATTTTCG
* *
66887021 TG-ATTCAAAAATTTTCGTGTTT
1 TGTTTTCAAAAATTCTCGTGTTT
66887043 TTTTAAAAAA
Statistics
Matches: 195, Mismatches: 26, Indels: 32
0.77 0.10 0.13
Matches are distributed among these distances:
70 29 0.15
71 75 0.38
72 73 0.37
73 12 0.06
74 4 0.02
75 2 0.01
ACGTcount: A:0.31, C:0.13, G:0.12, T:0.45
Consensus pattern (68 bp):
TGTTTTCAAAAATTCTCGTGTTTCAAAAATTTCGTGTTTTCAAAATTTCATATATTCAAAAATTT
TCG
Found at i:66886874 original size:53 final size:54
Alignment explanation
Indices: 66886756--66887042 Score: 205
Period size: 53 Copynumber: 5.4 Consensus size: 54
66886746 AATTCCGGTG
* * * * * * *
66886756 TTTCAAAAATTTACGTGTTTTC-AAAATTCTAGTG-ATTCAAAAAGTTTTCGTGT
1 TTTCAAAAATTTTCGTGTTTACAAAAATTTTCGTGTTTTCAAAAA-TTTTCATAT
* * *
66886809 TTTCTAAAAATTTTTGTGTTT-CAAAAATTTTCGCGTTTTCAAATATTTTCATAT
1 TTTC-AAAAATTTTCGTGTTTACAAAAATTTTCGTGTTTTCAAAAATTTTCATAT
* * * *
66886863 TTTCAAAAATTTTCGTGTTTTCAACAATTCTCGTG-TTTCAAAAA-TTTCAGTGT
1 TTTCAAAAATTTTCGTGTTTACAAAAATTTTCGTGTTTTCAAAAATTTTCA-TAT
* ** * * * * * *
66886916 TTTAAAAAATTTT-GCACTTTAAAAAAAATTTCTTGTGTTTCAAAAATTGTCGT-G
1 TTTCAAAAATTTTCG-TGTTTACAAAAATTTTCGTGT-TTTCAAAAATTTTCATAT
* * * * *
66886970 TTTCAAAAATCTTCGTGTTTCCAAAAATTTTCGGGTTTTCAAAAATTCTCGTGA-
1 TTTCAAAAATTTTCGTGTTTACAAAAATTTTCGTGTTTTCAAAAATTTTCAT-AT
66887024 -TTCAAAAATTTTCGTGTTT
1 TTTCAAAAATTTTCGTGTTT
66887043 TTTTAAAAAA
Statistics
Matches: 184, Mismatches: 38, Indels: 24
0.75 0.15 0.10
Matches are distributed among these distances:
52 6 0.03
53 87 0.47
54 70 0.38
55 18 0.10
56 3 0.02
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.45
Consensus pattern (54 bp):
TTTCAAAAATTTTCGTGTTTACAAAAATTTTCGTGTTTTCAAAAATTTTCATAT
Found at i:66886988 original size:72 final size:70
Alignment explanation
Indices: 66886736--66887001 Score: 254
Period size: 71 Copynumber: 3.7 Consensus size: 70
66886726 AAACTCAACA
* *
66886736 TGTTTTCAAAAATTC-CGGTGTTTCAAAAATTTACGTGTTTTC-AAAATTCT-AGTGA-TTCAAA
1 TGTTTTCAAAAATTCTC-GTGTTTCAAAAATTT-CGTGTTTTCAAAAATTTTCA-T-ATTTAAAA
**
66886797 AAGTTTTCG
62 AAAATTTCG
* * * * **
66886806 TGTTTTCTAAAAATTTTTGTGTTTCAAAAATTTTCGCGTTTTCAAATATTTTCATATTTTCAAAA
1 TGTTTTC-AAAAATTCTCGTGTTTCAAAAA-TTTCGTGTTTTCAAAAATTTTCATATTTAAAAAA
*
66886871 ATTTTCG
64 AATTTCG
* * *
66886878 TGTTTTCAACAATTCTCGTGTTTCAAAAATTTCAGTGTTTTAAAAAATTTTGCA-CTTTAAAAAA
1 TGTTTTCAAAAATTCTCGTGTTTCAAAAATTTC-GTGTTTTCAAAAATTTT-CATATTTAAAAAA
*
66886942 AATTTCT
64 AATTTCG
* *
66886949 TGTGTTTCAAAAATTGTCGTGTTTCAAAAATCTTCGTGTTTCCAAAAATTTTC
1 TGT-TTTCAAAAATTCTCGTGTTTCAAAAAT-TTCGTGTTTTCAAAAATTTTC
66887002 GGGTTTTCAA
Statistics
Matches: 163, Mismatches: 23, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
70 11 0.07
71 77 0.47
72 71 0.44
73 4 0.02
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.45
Consensus pattern (70 bp):
TGTTTTCAAAAATTCTCGTGTTTCAAAAATTTCGTGTTTTCAAAAATTTTCATATTTAAAAAAAA
TTTCG
Found at i:66887037 original size:35 final size:35
Alignment explanation
Indices: 66886739--66887043 Score: 191
Period size: 35 Copynumber: 8.6 Consensus size: 35
66886729 CTCAACATGT
*
66886739 TTTCAAAAA-TTCCG-GTGTTTCAAAAATT-TACGTG
1 TTTCAAAAATTTTCGTGT-TTTCAAAAATTCT-CGTG
* * * *
66886773 TTTTC-AAAATTCTAGTG-ATTCAAAAAGTTTTCGTG
1 -TTTCAAAAATTTTCGTGTTTTCAAAAA-TTCTCGTG
* * *
66886808 TTTTCTAAAAATTTTTGTG-TTTCAAAAATTTTCGCG
1 -TTTC-AAAAATTTTCGTGTTTTCAAAAATTCTCGTG
* * * *
66886844 TTTTCAAATATTTTCATATTTTCAAAAATTTTCGTG
1 -TTTCAAAAATTTTCGTGTTTTCAAAAATTCTCGTG
* *
66886880 TTTTCAACAATTCTCGTG-TTTCAAAAATT-TCAGTG
1 -TTTCAAAAATTTTCGTGTTTTCAAAAATTCTC-GTG
* * *** *
66886915 TTTTAAAAAATTTTGCACT-TTAAAAAAAATTTCTTGTG
1 -TTTCAAAAATTTT-C-GTGTTTTCAAAAA-TTCTCGTG
*
66886953 TTTCAAAAATTGTCGTG-TTTCAAAAA-TCTTCGTG
1 TTTCAAAAATTTTCGTGTTTTCAAAAATTC-TCGTG
*
66886987 TTTCCAAAAATTTTCGGGTTTTCAAAAATTCTCGTG
1 TTT-CAAAAATTTTCGTGTTTTCAAAAATTCTCGTG
*
66887023 ATTCAAAAATTTTCGTGTTTT
1 TTTCAAAAATTTTCGTGTTTT
66887044 TTTAAAAAAA
Statistics
Matches: 215, Mismatches: 37, Indels: 36
0.75 0.13 0.12
Matches are distributed among these distances:
33 2 0.01
34 21 0.10
35 87 0.40
36 61 0.28
37 38 0.18
38 5 0.02
39 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.45
Consensus pattern (35 bp):
TTTCAAAAATTTTCGTGTTTTCAAAAATTCTCGTG
Found at i:66898085 original size:46 final size:45
Alignment explanation
Indices: 66898018--66898356 Score: 207
Period size: 46 Copynumber: 7.8 Consensus size: 45
66898008 ATTATACAGG
*
66898018 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAA-TTCAGA
* * * *
66898064 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAGGATAGT-A-A
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGA-ATTCAGA
* * * * * *
66898108 TCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG------GA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAATTCAGA
* * * *
66898147 TCTTATCTCTCTGA-AGTTACAGTAGAGA-AGATC--A-CA-TCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGA-ACAGATCAAAGAATTCAGA
*
66898188 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAA-TTCAGA
* * * *
66898234 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAG-A--CACTA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAATTCA-GA
* * * * **
66898277 TCCTATCTCCCTGA-AGTTACAGTGGAGCGGAT-TAA-AATAAAGA
1 TCTTATCTCCCTGAGA-TTACAGTGGAACAGATCAAAGAATTCAGA
* * *
66898320 TCTTATCTCCCTGAGATTA-AGCGGAGCAGATCGAAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGA
66898357 CACTATCCTA
Statistics
Matches: 228, Mismatches: 41, Indels: 50
0.71 0.13 0.16
Matches are distributed among these distances:
37 1 0.00
38 1 0.00
39 23 0.10
40 1 0.00
41 27 0.12
42 17 0.07
43 48 0.21
44 35 0.15
45 2 0.01
46 72 0.32
47 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (45 bp):
TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAATTCAGA
Found at i:66898360 original size:85 final size:86
Alignment explanation
Indices: 66898231--66898428 Score: 362
Period size: 85 Copynumber: 2.3 Consensus size: 86
66898221 AAAGAATTTC
66898231 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTA
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTA
66898296 CAGTGGAGCGGATTAAAATAA
66 CAGTGGAGCGGATTAAAATAA
66898317 AGATCTTATCTCCCTGAGATTA-AGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTA
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTA
66898381 CAGTGGAGCGGATTAAAATAA
66 CAGTGGAGCGGATTAAAATAA
* *
66898402 AGGATCTTATCTCTCTGAGGTTACAGC
1 A-GATCTTATCTCCCTGAGATTACAGC
66898429 AGAGTAGGAT
Statistics
Matches: 108, Mismatches: 2, Indels: 3
0.96 0.02 0.03
Matches are distributed among these distances:
85 64 0.59
86 41 0.38
87 3 0.03
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (86 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTA
CAGTGGAGCGGATTAAAATAA
Found at i:66898370 original size:42 final size:43
Alignment explanation
Indices: 66898237--66898389 Score: 170
Period size: 43 Copynumber: 3.6 Consensus size: 43
66898227 TTTCAGATCT
66898237 TATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCC
1 TATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCC
* * * * * ** *
66898280 TATCTCCCTGA-AGTTACAGTGGAGCGGAT-TAAAATAAAGATCT
1 TATCTCCCTGAGA-TTACAGCGGAGCAGATCGAAGA-CACTATCC
66898323 TATCTCCCTGAGATTA-AGCGGAGCAGATCGAAGACACTATCC
1 TATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCC
*
66898365 TATCTCCCTGA-AGTTACAGTGGAGC
1 TATCTCCCTGAGA-TTACAGCGGAGC
66898390 GGATTAAAAT
Statistics
Matches: 87, Mismatches: 17, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
41 1 0.01
42 32 0.37
43 53 0.61
44 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.24
Consensus pattern (43 bp):
TATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCC
Found at i:66899905 original size:3 final size:3
Alignment explanation
Indices: 66899894--66899981 Score: 72
Period size: 3 Copynumber: 29.3 Consensus size: 3
66899884 ATTATTTTGT
* *
66899894 TTA TT- TTA TTA TTA TTA TTA TTA TTTA CTA TTA TTA TCT- TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA T-TA TTA TTA
* * * * * *
66899939 TTA TTG TTA GTA TTA TTA CTA CTA TTA TTA TTA CTA TCA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
66899982 ATTTATACCT
Statistics
Matches: 67, Mismatches: 14, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
2 3 0.04
3 60 0.90
4 4 0.06
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:66899914 original size:12 final size:12
Alignment explanation
Indices: 66899899--66899981 Score: 85
Period size: 12 Copynumber: 6.6 Consensus size: 12
66899889 TTTGTTTATT
*
66899899 TTATTATTATTA
1 TTATTATTACTA
66899911 TTATTATTTACTA
1 TTATTA-TTACTA
66899924 TTATTATCTTTACTA
1 TTATTA---TTACTA
* *
66899939 TTATTGTTAGTA
1 TTATTATTACTA
*
66899951 TTATTACTACTA
1 TTATTATTACTA
66899963 TTATTATTACTA
1 TTATTATTACTA
*
66899975 TCATTAT
1 TTATTAT
66899982 ATTTATACCT
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
12 37 0.62
13 11 0.18
15 12 0.20
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.59
Consensus pattern (12 bp):
TTATTATTACTA
Found at i:66912617 original size:44 final size:46
Alignment explanation
Indices: 66912503--66912884 Score: 134
Period size: 44 Copynumber: 8.8 Consensus size: 46
66912493 TATACAGGTT
* * * * *
66912503 TATCTCCCTGAGATTACATTGGAACAGACCAAAGAATTTCAGATCT
1 TATCTCCCTGAGATTACAATGGAGCAGATCAAAGAATGTCAGATCC
**
66912549 TATCTCCCTGAGATTACAGCGGAGCAGATCAAAG-ATAGT-A-ATCC
1 TATCTCCCTGAGATTACAATGGAGCAGATCAAAGAAT-GTCAGATCC
* * * *
66912593 TATCTCCTTGAGATTACAATGGAGCGGAT--TA-AA-G---GATCT
1 TATCTCCCTGAGATTACAATGGAGCAGATCAAAGAATGTCAGATCC
* * * * * *
66912632 TATCTCCCTGA-AGTTACAGTAGAGAAGATC--A-CA--TCAGGTCT
1 TATCTCCCTGAGA-TTACAATGGAGCAGATCAAAGAATGTCAGATCC
* ** * * * *
66912673 TATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGATCT
1 TATCTCCCTGAGATTACAATGGAGCAGATCAAAGAATGTCAGATCC
* * ** * *
66912719 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA-G--AGATCT
1 TATCTCCCTGAGATTACAATGGAGCAGATCAAAG-AATGTCAGATCC
** * *
66912763 TATCTCCCTGAGATTACAGCGGAGCAGATC---GAA-GACACTATCC
1 TATCTCCCTGAGATTACAATGGAGCAGATCAAAGAATGTCA-GATCC
* * * ** *
66912806 TATCTCCCTGA-AGTTACAGTGGAGCGGAT-TAA-AAT-AAAGGATCT
1 TATCTCCCTGAGA-TTACAATGGAGCAGATCAAAGAATGTCA-GATCC
** *
66912850 TATCTCCCTGAGATTACAGCGGAGCAGATCGAAGA
1 TATCTCCCTGAGATTACAATGGAGCAGATCAAAGA
66912885 CACTATCCTA
Statistics
Matches: 260, Mismatches: 50, Indels: 52
0.72 0.14 0.14
Matches are distributed among these distances:
38 1 0.00
39 27 0.10
40 3 0.01
41 29 0.11
42 5 0.02
43 29 0.11
44 93 0.36
45 6 0.02
46 66 0.25
47 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (46 bp):
TATCTCCCTGAGATTACAATGGAGCAGATCAAAGAATGTCAGATCC
Found at i:66912810 original size:87 final size:87
Alignment explanation
Indices: 66912719--66912956 Score: 379
Period size: 87 Copynumber: 2.7 Consensus size: 87
66912709 TTTCGGATCT
* * * * *
66912719 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC-CAGAGATCTTATCTCCCTGAGATTACAGC
1 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACAAAG-GATCTTATCTCCCTGAGATTACAGC
66912783 GGAGCAGATCGAAGACACTATCC
65 GGAGCAGATCGAAGACACTATCC
*
66912806 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCCCTGAGATTACAGCG
1 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCCCTGAGATTACAGCG
66912871 GAGCAGATCGAAGACACTATCC
66 GAGCAGATCGAAGACACTATCC
* * *
66912893 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGC
1 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCCCTGAGATTACAGC
66912957 AGAGTGGATC
Statistics
Matches: 142, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
87 140 0.99
88 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (87 bp):
TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCCCTGAGATTACAGCG
GAGCAGATCGAAGACACTATCC
Found at i:66912941 original size:131 final size:131
Alignment explanation
Indices: 66912713--66912955 Score: 292
Period size: 131 Copynumber: 1.9 Consensus size: 131
66912703 AAAGAATTTC
* * * * *
66912713 GGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATT
1 GGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACAGAGATCCTATCTCCCTGAGATT
** * *
66912778 ACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAA
66 ACAGCGGAGCAGATAAAAGAAACGATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAA
66912843 A
131 A
**
66912844 GGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA-CTATCCTATCTCCCTGA-AGT
1 GGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACAGAGATCCTATCTCCCTGAGA-T
* * * * * * *
66912907 TACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAG
65 TACAGCGGAGCAGA-TAAAAGAAACGATCCTATCTCCCTGAAGTTACAG
66912956 CAGAGTGGAT
Statistics
Matches: 92, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
129 1 0.01
130 27 0.29
131 64 0.70
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (131 bp):
GGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACAGAGATCCTATCTCCCTGAGATT
ACAGCGGAGCAGATAAAAGAAACGATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAA
A
Found at i:66912953 original size:44 final size:44
Alignment explanation
Indices: 66912544--66912955 Score: 267
Period size: 44 Copynumber: 9.5 Consensus size: 44
66912534 AAGAATTTCA
* * * *
66912544 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCA-AAGATAG
1 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTAGAAGACAG
* * * * * *
66912587 TAATCCTATCTCCTTGAGATTACAATGGAGCGGATT---A-A-AG
1 -GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTAGAAGACAG
* * * * * *
66912627 GATCTTATCTCCCTGAAGTTACAGTAGAGAAGATCA-CA-TCAG
1 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTAGAAGACAG
* ** **
66912669 G-TCTTATCTCCCTGAGATTACAGTGGAATAGACCA-AAGA-ATTTCG
1 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTAGAAGACA----G
*
66912714 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATT-GAAGCCAG
1 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTAGAAGACAG
* * * *
66912757 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGA-TCGAAGACAC
1 -GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTAGAAGACAG
* * * * * * *
66912801 TATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAG
1 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTAGAAGACAG
* * * *
66912845 GATCTTATCTCCCTGAGATTACAGCGGAGCAGA-TCGAAGACAC
1 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTAGAAGACAG
* * * * * * *
66912888 TATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAG
1 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTAGAAGACAG
*
66912932 GATCTTATCTCTCTGAGGTTACAG
1 GATCTTATCTCCCTGAGGTTACAG
66912956 CAGAGTGGAT
Statistics
Matches: 280, Mismatches: 73, Indels: 30
0.73 0.19 0.08
Matches are distributed among these distances:
39 25 0.09
40 2 0.01
41 32 0.11
42 4 0.01
43 61 0.22
44 122 0.44
45 2 0.01
46 31 0.11
47 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (44 bp):
GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTAGAAGACAG
Found at i:66913108 original size:83 final size:83
Alignment explanation
Indices: 66912958--66913114 Score: 188
Period size: 83 Copynumber: 1.9 Consensus size: 83
66912948 GGTTACAGCA
* * * * * * * *
66912958 GAGTGGATCACATCAAGTCTTATCTCCCTAAATAGTAGTGAAGCAGACGAAAGAAACCGATCTTA
1 GAGTAGATCACATCAAGTCTCATCTCCCTAAACAATAGCGAAGCAGACAAAAGAAACCAATCCTA
66913023 TCTCCCTAAGTAGTAGTG
66 TCTCCCTAAGTAGTAGTG
* * * * *
66913041 GAGTAGATCGCATCAAGTCTCATCTCTCTAAGCAATAGCGGAGCAGACAAAAGAAACTAATCCTA
1 GAGTAGATCACATCAAGTCTCATCTCCCTAAACAATAGCGAAGCAGACAAAAGAAACCAATCCTA
*
66913106 TCTCTCTAA
66 TCTCCCTAA
66913115 AGTTGCAGTG
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
83 60 1.00
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.24
Consensus pattern (83 bp):
GAGTAGATCACATCAAGTCTCATCTCCCTAAACAATAGCGAAGCAGACAAAAGAAACCAATCCTA
TCTCCCTAAGTAGTAGTG
Found at i:66914520 original size:3 final size:3
Alignment explanation
Indices: 66914509--66914596 Score: 72
Period size: 3 Copynumber: 29.3 Consensus size: 3
66914499 ATTATTTTGT
* *
66914509 TTA TT- TTA TTA TTA TTA TTA TTA TTTA CTA TTA TTA TCT- TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA T-TA TTA TTA
* * * * * *
66914554 TTA TTG TTA GTA TTA TTA CTA CTA TTA TTA TTA CTA TCA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
66914597 ATTTATACCT
Statistics
Matches: 67, Mismatches: 14, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
2 3 0.04
3 60 0.90
4 4 0.06
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:66914529 original size:12 final size:12
Alignment explanation
Indices: 66914514--66914596 Score: 85
Period size: 12 Copynumber: 6.6 Consensus size: 12
66914504 TTTGTTTATT
*
66914514 TTATTATTATTA
1 TTATTATTACTA
66914526 TTATTATTTACTA
1 TTATTA-TTACTA
66914539 TTATTATCTTTACTA
1 TTATTA---TTACTA
* *
66914554 TTATTGTTAGTA
1 TTATTATTACTA
*
66914566 TTATTACTACTA
1 TTATTATTACTA
66914578 TTATTATTACTA
1 TTATTATTACTA
*
66914590 TCATTAT
1 TTATTAT
66914597 ATTTATACCT
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
12 37 0.62
13 11 0.18
15 12 0.20
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.59
Consensus pattern (12 bp):
TTATTATTACTA
Found at i:66920377 original size:24 final size:24
Alignment explanation
Indices: 66920345--66920394 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
66920335 ATTCCTAGTA
*
66920345 GTCTGTATGTACAGATATATGTGT
1 GTCTATATGTACAGATATATGTGT
* *
66920369 GTCTATATGTGCAGATATGTGTGT
1 GTCTATATGTACAGATATATGTGT
66920393 GT
1 GT
66920395 GTTTGCTGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.22, C:0.08, G:0.28, T:0.42
Consensus pattern (24 bp):
GTCTATATGTACAGATATATGTGT
Found at i:66922989 original size:39 final size:39
Alignment explanation
Indices: 66922935--66923016 Score: 155
Period size: 39 Copynumber: 2.1 Consensus size: 39
66922925 GTTTGATAAC
66922935 ATTTCTAAATTGCAATTATTAAGCTTGACACATAATGAA
1 ATTTCTAAATTGCAATTATTAAGCTTGACACATAATGAA
*
66922974 ATTTCTAAATTGCAATTATTAAGCTTGACACATAATTAA
1 ATTTCTAAATTGCAATTATTAAGCTTGACACATAATGAA
66923013 ATTT
1 ATTT
66923017 TAGTAGAATT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.39
Consensus pattern (39 bp):
ATTTCTAAATTGCAATTATTAAGCTTGACACATAATGAA
Found at i:66923290 original size:26 final size:26
Alignment explanation
Indices: 66923261--66923310 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
66923251 GTTCCTAGTA
*
66923261 GTCTGTATGTGCAGATATATGTGTGT
1 GTCTATATGTGCAGATATATGTGTGT
*
66923287 GTCTATATGTGCAGATATGTGTGT
1 GTCTATATGTGCAGATATATGTGT
66923311 TTGCTGATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.20, C:0.08, G:0.30, T:0.42
Consensus pattern (26 bp):
GTCTATATGTGCAGATATATGTGTGT
Found at i:66928913 original size:21 final size:22
Alignment explanation
Indices: 66928865--66928913 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
66928855 TTTAATCCAA
**
66928865 TTCTATTTAGTTGAGTTTTCAC
1 TTCTATTTAGTTGAGTACTCAC
*
66928887 TT-TATTTAGTTGAG-ACTCAT
1 TTCTATTTAGTTGAGTACTCAC
66928907 TTCTATT
1 TTCTATT
66928914 GGTTTAATTG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 5 0.22
21 16 0.70
22 2 0.09
ACGTcount: A:0.20, C:0.12, G:0.12, T:0.55
Consensus pattern (22 bp):
TTCTATTTAGTTGAGTACTCAC
Found at i:66930074 original size:25 final size:25
Alignment explanation
Indices: 66930028--66930087 Score: 97
Period size: 25 Copynumber: 2.5 Consensus size: 25
66930018 ATTGACAGGT
66930028 ATAATT-AAAT-TTTTTGGGTTGTC
1 ATAATTAAAATATTTTTGGGTTGTC
*
66930051 ATAATTAAAATATTTTTGGTTTGTC
1 ATAATTAAAATATTTTTGGGTTGTC
66930076 ATAATTAAAATA
1 ATAATTAAAATA
66930088 GGTAAATCAA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
23 6 0.18
24 4 0.12
25 24 0.71
ACGTcount: A:0.37, C:0.03, G:0.12, T:0.48
Consensus pattern (25 bp):
ATAATTAAAATATTTTTGGGTTGTC
Found at i:66937264 original size:17 final size:17
Alignment explanation
Indices: 66937242--66937289 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
66937232 TTAGATTTTG
66937242 ATACCCATATCTTTCTA
1 ATACCCATATCTTTCTA
* *
66937259 ATACCCATATCTTTTTT
1 ATACCCATATCTTTCTA
*
66937276 ATACTCATATCTTT
1 ATACCCATATCTTT
66937290 GACTTTCTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.27, C:0.25, G:0.00, T:0.48
Consensus pattern (17 bp):
ATACCCATATCTTTCTA
Found at i:66939851 original size:15 final size:16
Alignment explanation
Indices: 66939831--66939860 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
66939821 ATACAGATGA
66939831 TTTGA-TTAAAATATT
1 TTTGATTTAAAATATT
66939846 TTTGATTTAAAATAT
1 TTTGATTTAAAATAT
66939861 GTACTTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (16 bp):
TTTGATTTAAAATATT
Found at i:66947514 original size:30 final size:30
Alignment explanation
Indices: 66947480--66947538 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
66947470 TTACTTCTGT
* * *
66947480 TCAAAATTATATTTTGACCCCTAAATTTTC
1 TCAAAATTACACTTTGACCCCAAAATTTTC
*
66947510 TCAAAATTACACTTTGGCCCCAAAATTTT
1 TCAAAATTACACTTTGACCCCAAAATTTT
66947539 TGCTGCAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.22, G:0.05, T:0.39
Consensus pattern (30 bp):
TCAAAATTACACTTTGACCCCAAAATTTTC
Found at i:66947877 original size:4 final size:4
Alignment explanation
Indices: 66947868--66947939 Score: 75
Period size: 4 Copynumber: 19.5 Consensus size: 4
66947858 GAGAAGAGAA
*
66947868 AAAG AAAG AAAG AAAA AAAG -AAG AAAG AAAG AAAG -AAG AAAG -AAG
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG
* *
66947913 AAAG -AAG AAA- AGAG TAAG -AAG AAAG AA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AA
66947940 GAAGAAAAAT
Statistics
Matches: 57, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
3 17 0.30
4 40 0.70
ACGTcount: A:0.74, C:0.00, G:0.25, T:0.01
Consensus pattern (4 bp):
AAAG
Found at i:66947896 original size:7 final size:7
Alignment explanation
Indices: 66947859--66947942 Score: 91
Period size: 7 Copynumber: 11.6 Consensus size: 7
66947849 TGAACGAAGG
66947859 AGAAGAGA
1 AGAA-AGA
66947867 A-AAAGAA
1 AGAAAG-A
66947874 AGAAAGAA
1 AGAAAG-A
*
66947882 AAAAAGA
1 AGAAAGA
66947889 AGAAAGAA
1 AGAAAG-A
66947897 AGAAAGA
1 AGAAAGA
66947904 AGAAAGA
1 AGAAAGA
66947911 AGAAAGA
1 AGAAAGA
66947918 AGAAA-A
1 AGAAAGA
*
66947924 GAGTAAGA
1 -AGAAAGA
66947932 AGAAAGA
1 AGAAAGA
66947939 AGAA
1 AGAA
66947943 GAAAAATGAA
Statistics
Matches: 67, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
6 3 0.04
7 44 0.66
8 20 0.30
ACGTcount: A:0.73, C:0.00, G:0.26, T:0.01
Consensus pattern (7 bp):
AGAAAGA
Found at i:66947924 original size:15 final size:15
Alignment explanation
Indices: 66947867--66947942 Score: 79
Period size: 15 Copynumber: 5.1 Consensus size: 15
66947857 GGAGAAGAGA
*
66947867 AAAAGAAAGAAAGAAA
1 AAAAG-AAGAAAGAAG
66947883 AAAAGAAGAAAGAA-
1 AAAAGAAGAAAGAAG
66947897 AGAAAGAAGAAAGAAG
1 A-AAAGAAGAAAGAAG
66947913 -AAAGAAG-AA-AAG
1 AAAAGAAGAAAGAAG
*
66947925 AGTAAGAAGAAAGAAG
1 A-AAAGAAGAAAGAAG
66947941 AA
1 AA
66947943 GAAAAATGAA
Statistics
Matches: 52, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
12 3 0.06
13 2 0.04
14 14 0.27
15 24 0.46
16 9 0.17
ACGTcount: A:0.74, C:0.00, G:0.25, T:0.01
Consensus pattern (15 bp):
AAAAGAAGAAAGAAG
Found at i:66948246 original size:25 final size:26
Alignment explanation
Indices: 66948211--66948268 Score: 84
Period size: 25 Copynumber: 2.3 Consensus size: 26
66948201 CCAACAGGCC
66948211 AAAAAAGAAAAAGAAG-AGAAAGAAAG
1 AAAAAAGAAAAAGAAGAAG-AAGAAAG
66948237 AAAAAA-AAAAAGAAGAAGAAGAAAG
1 AAAAAAGAAAAAGAAGAAGAAGAAAG
*
66948262 AGAAAAG
1 AAAAAAG
66948269 GTTTCAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 21 0.72
26 8 0.28
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (26 bp):
AAAAAAGAAAAAGAAGAAGAAGAAAG
Found at i:66948399 original size:16 final size:16
Alignment explanation
Indices: 66948356--66948410 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 16
66948346 TTAATACTCG
* *
66948356 TATTTTTATATTATTA
1 TATTTTTGTATTTTTA
*
66948372 GTACTTTATGTATTTTTA
1 -TA-TTTTTGTATTTTTA
66948390 TATTTTTGTA--TTTA
1 TATTTTTGTATTTTTA
66948404 TATTTTT
1 TATTTTT
66948411 AATTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
14 11 0.33
16 7 0.21
17 4 0.12
18 11 0.33
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.69
Consensus pattern (16 bp):
TATTTTTGTATTTTTA
Found at i:66948593 original size:20 final size:20
Alignment explanation
Indices: 66948568--66948609 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
66948558 AAAAATATTC
*
66948568 AAAAAATTTCGTGT-TTTCA
1 AAAAAAATTCGTGTGTTTCA
*
66948587 AAAAAAATTCTTGTGTTTCA
1 AAAAAAATTCGTGTGTTTCA
66948607 AAA
1 AAA
66948610 TTTTTATGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.38
Consensus pattern (20 bp):
AAAAAAATTCGTGTGTTTCA
Found at i:66948611 original size:16 final size:17
Alignment explanation
Indices: 66948590--66948628 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
66948580 GTTTTCAAAA
*
66948590 AAAATTCTTGTGT-TTC
1 AAAATTCTTATGTCTTC
*
66948606 AAAATTTTTATGTCTTC
1 AAAATTCTTATGTCTTC
66948623 AAAATT
1 AAAATT
66948629 TTTTTTCTCG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.33, C:0.10, G:0.08, T:0.49
Consensus pattern (17 bp):
AAAATTCTTATGTCTTC
Found at i:66948623 original size:17 final size:16
Alignment explanation
Indices: 66948590--66948631 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
66948580 GTTTTCAAAA
* *
66948590 AAAATTCTTGTGTTTC
1 AAAATTTTTATGTTTC
66948606 AAAATTTTTATGTCTTC
1 AAAATTTTTATGT-TTC
66948623 AAAATTTTT
1 AAAATTTTT
66948632 TTTCTCGTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 11 0.48
17 12 0.52
ACGTcount: A:0.31, C:0.10, G:0.07, T:0.52
Consensus pattern (16 bp):
AAAATTTTTATGTTTC
Found at i:66948842 original size:17 final size:17
Alignment explanation
Indices: 66948808--66949111 Score: 231
Period size: 18 Copynumber: 17.2 Consensus size: 17
66948798 CTCAACATGT
*
66948808 TTTCAAAAA-TTCCGGTG
1 TTTCAAAAATTTTC-GTG
*
66948825 TTTCAAAAATTTACGTG
1 TTTCAAAAATTTTCGTG
* *
66948842 TTTTC-AAAATTCTAGTG
1 -TTTCAAAAATTTTCGTG
*
66948859 ATTCAAAAAGTTTTCGTG
1 TTTCAAAAA-TTTTCGTG
*
66948877 TTTTCTAAAAATTTTTGTG
1 -TTTC-AAAAATTTTCGTG
66948896 TTTCAAAAATTTTCGTG
1 TTTCAAAAATTTTCGTG
* * *
66948913 TTTTCAAATATTTTCATAT
1 -TTTCAAAAATTTTCGT-G
66948932 TTTCAAAAATTTTCGTG
1 TTTCAAAAATTTTCGTG
* *
66948949 TTTTCAATAATTCTCGTG
1 -TTTCAAAAATTTTCGTG
*
66948967 TTTCACAAA-TTTCAGTG
1 TTTCAAAAATTTTC-GTG
* *
66948984 CTTTAAAAAATTTTGCACT-
1 -TTTCAAAAATTTT-C-GTG
**
66949003 TTAAAAAAAAATTCTT-GTG
1 TT--TCAAAAATT-TTCGTG
*
66949022 TTTCAAAAATTGTCGTG
1 TTTCAAAAATTTTCGTG
*
66949039 TTTCAAAAATCTTCGTG
1 TTTCAAAAATTTTCGTG
*
66949056 TTTCCAAAAATTTTCGGG
1 TTT-CAAAAATTTTCGTG
*
66949074 TTTTCAAAAATTCTCGTG
1 -TTTCAAAAATTTTCGTG
*
66949092 ATTCAAAAATTTTCGTG
1 TTTCAAAAATTTTCGTG
66949109 TTT
1 TTT
66949112 TTTAAAAAAA
Statistics
Matches: 229, Mismatches: 38, Indels: 40
0.75 0.12 0.13
Matches are distributed among these distances:
16 7 0.03
17 92 0.40
18 94 0.41
19 18 0.08
20 16 0.07
21 2 0.01
ACGTcount: A:0.31, C:0.13, G:0.12, T:0.45
Consensus pattern (17 bp):
TTTCAAAAATTTTCGTG
Found at i:66949107 original size:53 final size:53
Alignment explanation
Indices: 66948805--66949112 Score: 252
Period size: 53 Copynumber: 5.8 Consensus size: 53
66948795 AAACTCAACA
* * *
66948805 TGTTTTCAAAAATTC-CGGTGTTTCAAAAATTTACGTGTTTTC-AAAATTCTAG
1 TGTTTTCAAAAATTCTC-GTGTTTCAAAAATTTTCGTGTTTTCAAAAATTTTCG
* * *
66948857 TG-ATTCAAAAAGTTTTCGTGTTTTCTAAAAATTTTTGTG-TTTCAAAAATTTTCG
1 TGTTTTCAAAAA-TTCTCGTG-TTTC-AAAAATTTTCGTGTTTTCAAAAATTTTCG
* * * * * *
66948911 TGTTTTCAAATATTTTCATATTTTCAAAAATTTTCGTGTTTTCAATAATTCTCG
1 TGTTTTCAAAAATTCTCGT-GTTTCAAAAATTTTCGTGTTTTCAAAAATTTTCG
* * ** ** ** *
66948965 TG-TTTCACAAATT-TCAGTGCTTTAAAAAATTTT-GCACTTTAAAAAAAAATTCT
1 TGTTTTCAAAAATTCTC-GTG-TTTCAAAAATTTTCG-TGTTTTCAAAAATTTTCG
* * *
66949018 TGTGTTTCAAAAATTGTCGTGTTTCAAAAATCTTCGTGTTTCCAAAAATTTTCG
1 TGT-TTTCAAAAATTCTCGTGTTTCAAAAATTTTCGTGTTTTCAAAAATTTTCG
* *
66949072 GGTTTTCAAAAATTCTCGTGATTCAAAAATTTTCGTGTTTT
1 TGTTTTCAAAAATTCTCGTGTTTCAAAAATTTTCGTGTTTT
66949113 TTAAAAAAAA
Statistics
Matches: 199, Mismatches: 42, Indels: 29
0.74 0.16 0.11
Matches are distributed among these distances:
51 8 0.04
52 10 0.05
53 88 0.44
54 70 0.35
55 21 0.11
56 2 0.01
ACGTcount: A:0.31, C:0.13, G:0.12, T:0.45
Consensus pattern (53 bp):
TGTTTTCAAAAATTCTCGTGTTTCAAAAATTTTCGTGTTTTCAAAAATTTTCG
Found at i:66949119 original size:36 final size:35
Alignment explanation
Indices: 66948808--66949112 Score: 191
Period size: 35 Copynumber: 8.6 Consensus size: 35
66948798 CTCAACATGT
*
66948808 TTTCAAAAA-TTCCG-GTGTTTCAAAAATT-TACGTG
1 TTTCAAAAATTTTCGTGT-TTTCAAAAATTCT-CGTG
* * * *
66948842 TTTTC-AAAATTCTAGTG-ATTCAAAAAGTTTTCGTG
1 -TTTCAAAAATTTTCGTGTTTTCAAAAA-TTCTCGTG
* *
66948877 TTTTCTAAAAATTTTTGTG-TTTCAAAAATTTTCGTG
1 -TTTC-AAAAATTTTCGTGTTTTCAAAAATTCTCGTG
* * * *
66948913 TTTTCAAATATTTTCATATTTTCAAAAATTTTCGTG
1 -TTTCAAAAATTTTCGTGTTTTCAAAAATTCTCGTG
* * *
66948949 TTTTCAATAATTCTCGTG-TTTCACAAATT-TCAGTG
1 -TTTCAAAAATTTTCGTGTTTTCAAAAATTCTC-GTG
* * *** *
66948984 CTTTAAAAAATTTTGCACT-TTAAAAAAAAATTCTTGTG
1 -TTTCAAAAATTTT-C-GTGTT-TTCAAAAATTCTCGTG
*
66949022 TTTCAAAAATTGTCGTG-TTTCAAAAA-TCTTCGTG
1 TTTCAAAAATTTTCGTGTTTTCAAAAATTC-TCGTG
*
66949056 TTTCCAAAAATTTTCGGGTTTTCAAAAATTCTCGTG
1 TTT-CAAAAATTTTCGTGTTTTCAAAAATTCTCGTG
*
66949092 ATTCAAAAATTTTCGTGTTTT
1 TTTCAAAAATTTTCGTGTTTT
66949113 TTAAAAAAAA
Statistics
Matches: 214, Mismatches: 38, Indels: 36
0.74 0.13 0.12
Matches are distributed among these distances:
33 2 0.01
34 26 0.12
35 80 0.37
36 63 0.29
37 33 0.15
38 9 0.04
39 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.45
Consensus pattern (35 bp):
TTTCAAAAATTTTCGTGTTTTCAAAAATTCTCGTG
Found at i:66949127 original size:36 final size:36
Alignment explanation
Indices: 66949025--66949127 Score: 84
Period size: 36 Copynumber: 2.9 Consensus size: 36
66949015 TCTTGTGTTT
* * *** *
66949025 CAAAAATTGTCGTG-TTTCAAAAATCTTCGTGTTTC
1 CAAAAATTTTCGGGTTTTCAAAAAAAATCGTGATTC
***
66949060 CAAAAATTTTCGGGTTTTCAAAAATTCTCGTGATT-
1 CAAAAATTTTCGGGTTTTCAAAAAAAATCGTGATTC
* *
66949095 CAAAAATTTTCGTGTTTTTTAAAAAAAATCGTG
1 CAAAAATTTTCG-GGTTTTCAAAAAAAATCGTG
66949128 TTTTTTAAAC
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
35 24 0.43
36 32 0.57
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.40
Consensus pattern (36 bp):
CAAAAATTTTCGGGTTTTCAAAAAAAATCGTGATTC
Found at i:66949445 original size:30 final size:30
Alignment explanation
Indices: 66949411--66949469 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
66949401 TACTTCTGTT
* * *
66949411 TCAAAATTATATTTTGACCCCTAAATTTTC
1 TCAAAATTACACTTTGACCCCAAAATTTTC
*
66949441 TCAAAATTACACTTTGGCCCCAAAATTTT
1 TCAAAATTACACTTTGACCCCAAAATTTT
66949470 TGCTGCAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.22, G:0.05, T:0.39
Consensus pattern (30 bp):
TCAAAATTACACTTTGACCCCAAAATTTTC
Found at i:66949809 original size:4 final size:4
Alignment explanation
Indices: 66949800--66949871 Score: 75
Period size: 4 Copynumber: 19.5 Consensus size: 4
66949790 GAGAAGAGAA
*
66949800 AAAG AAAG AAAG AAAA AAAG -AAG AAAG AAAG AAAG -AAG AAAG -AAG
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG
* *
66949845 AAAG -AAG AAA- AGAG TAAG -AAG AAAG AA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AA
66949872 GAAGAAAAAT
Statistics
Matches: 57, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
3 17 0.30
4 40 0.70
ACGTcount: A:0.74, C:0.00, G:0.25, T:0.01
Consensus pattern (4 bp):
AAAG
Found at i:66949828 original size:7 final size:7
Alignment explanation
Indices: 66949791--66949874 Score: 91
Period size: 7 Copynumber: 11.6 Consensus size: 7
66949781 TGAACGAAGG
66949791 AGAAGAGA
1 AGAA-AGA
66949799 A-AAAGAA
1 AGAAAG-A
66949806 AGAAAGAA
1 AGAAAG-A
*
66949814 AAAAAGA
1 AGAAAGA
66949821 AGAAAGAA
1 AGAAAG-A
66949829 AGAAAGA
1 AGAAAGA
66949836 AGAAAGA
1 AGAAAGA
66949843 AGAAAGA
1 AGAAAGA
66949850 AGAAA-A
1 AGAAAGA
*
66949856 GAGTAAGA
1 -AGAAAGA
66949864 AGAAAGA
1 AGAAAGA
66949871 AGAA
1 AGAA
66949875 GAAAAATGAA
Statistics
Matches: 67, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
6 3 0.04
7 44 0.66
8 20 0.30
ACGTcount: A:0.73, C:0.00, G:0.26, T:0.01
Consensus pattern (7 bp):
AGAAAGA
Found at i:66949856 original size:15 final size:15
Alignment explanation
Indices: 66949799--66949874 Score: 79
Period size: 15 Copynumber: 5.1 Consensus size: 15
66949789 GGAGAAGAGA
*
66949799 AAAAGAAAGAAAGAAA
1 AAAAG-AAGAAAGAAG
66949815 AAAAGAAGAAAGAA-
1 AAAAGAAGAAAGAAG
66949829 AGAAAGAAGAAAGAAG
1 A-AAAGAAGAAAGAAG
66949845 -AAAGAAG-AA-AAG
1 AAAAGAAGAAAGAAG
*
66949857 AGTAAGAAGAAAGAAG
1 A-AAAGAAGAAAGAAG
66949873 AA
1 AA
66949875 GAAAAATGAA
Statistics
Matches: 52, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
12 3 0.06
13 2 0.04
14 14 0.27
15 24 0.46
16 9 0.17
ACGTcount: A:0.74, C:0.00, G:0.25, T:0.01
Consensus pattern (15 bp):
AAAAGAAGAAAGAAG
Found at i:66950178 original size:26 final size:26
Alignment explanation
Indices: 66950142--66950199 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
66950132 CCAACAGGCC
*
66950142 AAAAAAGAAAAAGAAG-AGAAAGAAAG
1 AAAAAAAAAAAAGAAGAAG-AAGAAAG
66950168 AAAAAAAAAAAAGAAGAAGAAGAAAG
1 AAAAAAAAAAAAGAAGAAGAAGAAAG
*
66950194 AGAAAA
1 AAAAAA
66950200 GGTTTCAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 27 0.93
27 2 0.07
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (26 bp):
AAAAAAAAAAAAGAAGAAGAAGAAAG
Found at i:66950336 original size:14 final size:15
Alignment explanation
Indices: 66950288--66950341 Score: 56
Period size: 14 Copynumber: 3.5 Consensus size: 15
66950278 TTAATACTCG
*
66950288 TATTTTTATATTATTA
1 TATTTTTGTATT-TTA
*
66950304 GTACTTTATGTATTTTA
1 -TA-TTTTTGTATTTTA
66950321 TATTTTTGTA-TTTA
1 TATTTTTGTATTTTA
66950335 TATTTTT
1 TATTTTT
66950342 AATTTAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
14 11 0.33
15 7 0.21
16 2 0.06
17 5 0.15
18 8 0.24
ACGTcount: A:0.24, C:0.02, G:0.06, T:0.69
Consensus pattern (15 bp):
TATTTTTGTATTTTA
Found at i:66950525 original size:20 final size:20
Alignment explanation
Indices: 66950500--66950541 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
66950490 AAAAATATTC
*
66950500 AAAAAATTTCGTGT-TTTCA
1 AAAAAAATTCGTGTGTTTCA
*
66950519 AAAAAAATTCTTGTGTTTCA
1 AAAAAAATTCGTGTGTTTCA
66950539 AAA
1 AAA
66950542 TTTTTATGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.38
Consensus pattern (20 bp):
AAAAAAATTCGTGTGTTTCA
Found at i:66950543 original size:16 final size:17
Alignment explanation
Indices: 66950522--66950560 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
66950512 GTTTTCAAAA
*
66950522 AAAATTCTTGTGT-TTC
1 AAAATTCTTATGTCTTC
*
66950538 AAAATTTTTATGTCTTC
1 AAAATTCTTATGTCTTC
66950555 AAAATT
1 AAAATT
66950561 TTTTTTCTCG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.33, C:0.10, G:0.08, T:0.49
Consensus pattern (17 bp):
AAAATTCTTATGTCTTC
Found at i:66950555 original size:17 final size:16
Alignment explanation
Indices: 66950522--66950563 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
66950512 GTTTTCAAAA
* *
66950522 AAAATTCTTGTGTTTC
1 AAAATTTTTATGTTTC
66950538 AAAATTTTTATGTCTTC
1 AAAATTTTTATGT-TTC
66950555 AAAATTTTT
1 AAAATTTTT
66950564 TTTCTCGTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 11 0.48
17 12 0.52
ACGTcount: A:0.31, C:0.10, G:0.07, T:0.52
Consensus pattern (16 bp):
AAAATTTTTATGTTTC
Found at i:66950774 original size:17 final size:17
Alignment explanation
Indices: 66950740--66951043 Score: 231
Period size: 18 Copynumber: 17.2 Consensus size: 17
66950730 CTCAACATGT
*
66950740 TTTCAAAAA-TTCCGGTG
1 TTTCAAAAATTTTC-GTG
*
66950757 TTTCAAAAATTTACGTG
1 TTTCAAAAATTTTCGTG
* *
66950774 TTTTC-AAAATTCTAGTG
1 -TTTCAAAAATTTTCGTG
*
66950791 ATTCAAAAAGTTTTCGTG
1 TTTCAAAAA-TTTTCGTG
*
66950809 TTTTCTAAAAATTTTTGTG
1 -TTTC-AAAAATTTTCGTG
66950828 TTTCAAAAATTTTCGTG
1 TTTCAAAAATTTTCGTG
* * *
66950845 TTTTCAAATATTTTCATAT
1 -TTTCAAAAATTTTCGT-G
66950864 TTTCAAAAATTTTCGTG
1 TTTCAAAAATTTTCGTG
* *
66950881 TTTTCAATAATTCTCGTG
1 -TTTCAAAAATTTTCGTG
*
66950899 TTTCACAAA-TTTCAGTG
1 TTTCAAAAATTTTC-GTG
* *
66950916 CTTTAAAAAATTTTGCACT-
1 -TTTCAAAAATTTT-C-GTG
**
66950935 TTAAAAAAAAATTCTT-GTG
1 TT--TCAAAAATT-TTCGTG
*
66950954 TTTCAAAAATTGTCGTG
1 TTTCAAAAATTTTCGTG
*
66950971 TTTCAAAAATCTTCGTG
1 TTTCAAAAATTTTCGTG
*
66950988 TTTCCAAAAATTTTCGGG
1 TTT-CAAAAATTTTCGTG
*
66951006 TTTTCAAAAATTCTCGTG
1 -TTTCAAAAATTTTCGTG
*
66951024 ATTCAAAAATTTTCGTG
1 TTTCAAAAATTTTCGTG
66951041 TTT
1 TTT
66951044 TTTAAAAAAA
Statistics
Matches: 229, Mismatches: 38, Indels: 40
0.75 0.12 0.13
Matches are distributed among these distances:
16 7 0.03
17 92 0.40
18 94 0.41
19 18 0.08
20 16 0.07
21 2 0.01
ACGTcount: A:0.31, C:0.13, G:0.12, T:0.45
Consensus pattern (17 bp):
TTTCAAAAATTTTCGTG
Found at i:66951039 original size:53 final size:53
Alignment explanation
Indices: 66950737--66951044 Score: 252
Period size: 53 Copynumber: 5.8 Consensus size: 53
66950727 AAACTCAACA
* * *
66950737 TGTTTTCAAAAATTC-CGGTGTTTCAAAAATTTACGTGTTTTC-AAAATTCTAG
1 TGTTTTCAAAAATTCTC-GTGTTTCAAAAATTTTCGTGTTTTCAAAAATTTTCG
* * *
66950789 TG-ATTCAAAAAGTTTTCGTGTTTTCTAAAAATTTTTGTG-TTTCAAAAATTTTCG
1 TGTTTTCAAAAA-TTCTCGTG-TTTC-AAAAATTTTCGTGTTTTCAAAAATTTTCG
* * * * * *
66950843 TGTTTTCAAATATTTTCATATTTTCAAAAATTTTCGTGTTTTCAATAATTCTCG
1 TGTTTTCAAAAATTCTCGT-GTTTCAAAAATTTTCGTGTTTTCAAAAATTTTCG
* * ** ** ** *
66950897 TG-TTTCACAAATT-TCAGTGCTTTAAAAAATTTT-GCACTTTAAAAAAAAATTCT
1 TGTTTTCAAAAATTCTC-GTG-TTTCAAAAATTTTCG-TGTTTTCAAAAATTTTCG
* * *
66950950 TGTGTTTCAAAAATTGTCGTGTTTCAAAAATCTTCGTGTTTCCAAAAATTTTCG
1 TGT-TTTCAAAAATTCTCGTGTTTCAAAAATTTTCGTGTTTTCAAAAATTTTCG
* *
66951004 GGTTTTCAAAAATTCTCGTGATTCAAAAATTTTCGTGTTTT
1 TGTTTTCAAAAATTCTCGTGTTTCAAAAATTTTCGTGTTTT
66951045 TTAAAAAAAA
Statistics
Matches: 199, Mismatches: 42, Indels: 29
0.74 0.16 0.11
Matches are distributed among these distances:
51 8 0.04
52 10 0.05
53 88 0.44
54 70 0.35
55 21 0.11
56 2 0.01
ACGTcount: A:0.31, C:0.13, G:0.12, T:0.45
Consensus pattern (53 bp):
TGTTTTCAAAAATTCTCGTGTTTCAAAAATTTTCGTGTTTTCAAAAATTTTCG
Found at i:66951051 original size:36 final size:35
Alignment explanation
Indices: 66950740--66951044 Score: 191
Period size: 35 Copynumber: 8.6 Consensus size: 35
66950730 CTCAACATGT
*
66950740 TTTCAAAAA-TTCCG-GTGTTTCAAAAATT-TACGTG
1 TTTCAAAAATTTTCGTGT-TTTCAAAAATTCT-CGTG
* * * *
66950774 TTTTC-AAAATTCTAGTG-ATTCAAAAAGTTTTCGTG
1 -TTTCAAAAATTTTCGTGTTTTCAAAAA-TTCTCGTG
* *
66950809 TTTTCTAAAAATTTTTGTG-TTTCAAAAATTTTCGTG
1 -TTTC-AAAAATTTTCGTGTTTTCAAAAATTCTCGTG
* * * *
66950845 TTTTCAAATATTTTCATATTTTCAAAAATTTTCGTG
1 -TTTCAAAAATTTTCGTGTTTTCAAAAATTCTCGTG
* * *
66950881 TTTTCAATAATTCTCGTG-TTTCACAAATT-TCAGTG
1 -TTTCAAAAATTTTCGTGTTTTCAAAAATTCTC-GTG
* * *** *
66950916 CTTTAAAAAATTTTGCACT-TTAAAAAAAAATTCTTGTG
1 -TTTCAAAAATTTT-C-GTGTT-TTCAAAAATTCTCGTG
*
66950954 TTTCAAAAATTGTCGTG-TTTCAAAAA-TCTTCGTG
1 TTTCAAAAATTTTCGTGTTTTCAAAAATTC-TCGTG
*
66950988 TTTCCAAAAATTTTCGGGTTTTCAAAAATTCTCGTG
1 TTT-CAAAAATTTTCGTGTTTTCAAAAATTCTCGTG
*
66951024 ATTCAAAAATTTTCGTGTTTT
1 TTTCAAAAATTTTCGTGTTTT
66951045 TTAAAAAAAA
Statistics
Matches: 214, Mismatches: 38, Indels: 36
0.74 0.13 0.12
Matches are distributed among these distances:
33 2 0.01
34 26 0.12
35 80 0.37
36 63 0.29
37 33 0.15
38 9 0.04
39 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.45
Consensus pattern (35 bp):
TTTCAAAAATTTTCGTGTTTTCAAAAATTCTCGTG
Found at i:66951059 original size:36 final size:36
Alignment explanation
Indices: 66950957--66951059 Score: 84
Period size: 36 Copynumber: 2.9 Consensus size: 36
66950947 TCTTGTGTTT
* * *** *
66950957 CAAAAATTGTCGTG-TTTCAAAAATCTTCGTGTTTC
1 CAAAAATTTTCGGGTTTTCAAAAAAAATCGTGATTC
***
66950992 CAAAAATTTTCGGGTTTTCAAAAATTCTCGTGATT-
1 CAAAAATTTTCGGGTTTTCAAAAAAAATCGTGATTC
* *
66951027 CAAAAATTTTCGTGTTTTTTAAAAAAAATCGTG
1 CAAAAATTTTCG-GGTTTTCAAAAAAAATCGTG
66951060 TTTTTTAAAC
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
35 24 0.43
36 32 0.57
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.40
Consensus pattern (36 bp):
CAAAAATTTTCGGGTTTTCAAAAAAAATCGTGATTC
Found at i:66951377 original size:30 final size:30
Alignment explanation
Indices: 66951343--66951401 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
66951333 TACTTCTGTT
* * *
66951343 TCAAAATTATATTTTGACCCCTAAATTTTC
1 TCAAAATTACACTTTGACCCCAAAATTTTC
*
66951373 TCAAAATTACACTTTGGCCCCAAAATTTT
1 TCAAAATTACACTTTGACCCCAAAATTTT
66951402 TGCTGCAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.22, G:0.05, T:0.39
Consensus pattern (30 bp):
TCAAAATTACACTTTGACCCCAAAATTTTC
Found at i:66951740 original size:4 final size:4
Alignment explanation
Indices: 66951731--66951802 Score: 75
Period size: 4 Copynumber: 19.5 Consensus size: 4
66951721 GAGAAGAGAA
*
66951731 AAAG AAAG AAAG AAAA AAAG -AAG AAAG AAAG AAAG -AAG AAAG -AAG
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG
* *
66951776 AAAG -AAG AAA- AGAG TAAG -AAG AAAG AA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AA
66951803 GAAGAAAAAT
Statistics
Matches: 57, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
3 17 0.30
4 40 0.70
ACGTcount: A:0.74, C:0.00, G:0.25, T:0.01
Consensus pattern (4 bp):
AAAG
Found at i:66951759 original size:7 final size:7
Alignment explanation
Indices: 66951722--66951805 Score: 91
Period size: 7 Copynumber: 11.6 Consensus size: 7
66951712 TGAACGAAGG
66951722 AGAAGAGA
1 AGAA-AGA
66951730 A-AAAGAA
1 AGAAAG-A
66951737 AGAAAGAA
1 AGAAAG-A
*
66951745 AAAAAGA
1 AGAAAGA
66951752 AGAAAGAA
1 AGAAAG-A
66951760 AGAAAGA
1 AGAAAGA
66951767 AGAAAGA
1 AGAAAGA
66951774 AGAAAGA
1 AGAAAGA
66951781 AGAAA-A
1 AGAAAGA
*
66951787 GAGTAAGA
1 -AGAAAGA
66951795 AGAAAGA
1 AGAAAGA
66951802 AGAA
1 AGAA
66951806 GAAAAATGAA
Statistics
Matches: 67, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
6 3 0.04
7 44 0.66
8 20 0.30
ACGTcount: A:0.73, C:0.00, G:0.26, T:0.01
Consensus pattern (7 bp):
AGAAAGA
Found at i:66951787 original size:15 final size:15
Alignment explanation
Indices: 66951730--66951805 Score: 79
Period size: 15 Copynumber: 5.1 Consensus size: 15
66951720 GGAGAAGAGA
*
66951730 AAAAGAAAGAAAGAAA
1 AAAAG-AAGAAAGAAG
66951746 AAAAGAAGAAAGAA-
1 AAAAGAAGAAAGAAG
66951760 AGAAAGAAGAAAGAAG
1 A-AAAGAAGAAAGAAG
66951776 -AAAGAAG-AA-AAG
1 AAAAGAAGAAAGAAG
*
66951788 AGTAAGAAGAAAGAAG
1 A-AAAGAAGAAAGAAG
66951804 AA
1 AA
66951806 GAAAAATGAA
Statistics
Matches: 52, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
12 3 0.06
13 2 0.04
14 14 0.27
15 24 0.46
16 9 0.17
ACGTcount: A:0.74, C:0.00, G:0.25, T:0.01
Consensus pattern (15 bp):
AAAAGAAGAAAGAAG
Found at i:66952110 original size:26 final size:26
Alignment explanation
Indices: 66952074--66952131 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
66952064 CCAACAGGCC
*
66952074 AAAAAAGAAAAAGAAG-AGAAAGAAAG
1 AAAAAAAAAAAAGAAGAAG-AAGAAAG
66952100 AAAAAAAAAAAAGAAGAAGAAGAAAG
1 AAAAAAAAAAAAGAAGAAGAAGAAAG
*
66952126 AGAAAA
1 AAAAAA
66952132 GGTTTCAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 27 0.93
27 2 0.07
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (26 bp):
AAAAAAAAAAAAGAAGAAGAAGAAAG
Found at i:66952263 original size:16 final size:16
Alignment explanation
Indices: 66952220--66952274 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 16
66952210 TTAATACTCG
* *
66952220 TATTTTTATATTATTA
1 TATTTTTGTATTTTTA
*
66952236 GTACTTTATGTATTTTTA
1 -TA-TTTTTGTATTTTTA
66952254 TATTTTTGTA--TTTA
1 TATTTTTGTATTTTTA
66952268 TATTTTT
1 TATTTTT
66952275 AATTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
14 11 0.33
16 7 0.21
17 4 0.12
18 11 0.33
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.69
Consensus pattern (16 bp):
TATTTTTGTATTTTTA
Found at i:66952458 original size:20 final size:20
Alignment explanation
Indices: 66952433--66952474 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
66952423 AAAAATATTC
*
66952433 AAAAAATTTCGTGT-TTTCA
1 AAAAAAATTCGTGTGTTTCA
*
66952452 AAAAAAATTCTTGTGTTTCA
1 AAAAAAATTCGTGTGTTTCA
66952472 AAA
1 AAA
66952475 TTTTTATGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.38
Consensus pattern (20 bp):
AAAAAAATTCGTGTGTTTCA
Found at i:66952476 original size:16 final size:17
Alignment explanation
Indices: 66952455--66952493 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
66952445 GTTTTCAAAA
*
66952455 AAAATTCTTGTGT-TTC
1 AAAATTCTTATGTCTTC
*
66952471 AAAATTTTTATGTCTTC
1 AAAATTCTTATGTCTTC
66952488 AAAATT
1 AAAATT
66952494 TTTTTTCTCG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.33, C:0.10, G:0.08, T:0.49
Consensus pattern (17 bp):
AAAATTCTTATGTCTTC
Found at i:66952488 original size:17 final size:16
Alignment explanation
Indices: 66952455--66952496 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
66952445 GTTTTCAAAA
* *
66952455 AAAATTCTTGTGTTTC
1 AAAATTTTTATGTTTC
66952471 AAAATTTTTATGTCTTC
1 AAAATTTTTATGT-TTC
66952488 AAAATTTTT
1 AAAATTTTT
66952497 TTTCTCGTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 11 0.48
17 12 0.52
ACGTcount: A:0.31, C:0.10, G:0.07, T:0.52
Consensus pattern (16 bp):
AAAATTTTTATGTTTC
Found at i:66952707 original size:17 final size:17
Alignment explanation
Indices: 66952673--66952976 Score: 231
Period size: 18 Copynumber: 17.2 Consensus size: 17
66952663 CTCAACATGT
*
66952673 TTTCAAAAA-TTCCGGTG
1 TTTCAAAAATTTTC-GTG
*
66952690 TTTCAAAAATTTACGTG
1 TTTCAAAAATTTTCGTG
* *
66952707 TTTTC-AAAATTCTAGTG
1 -TTTCAAAAATTTTCGTG
*
66952724 ATTCAAAAAGTTTTCGTG
1 TTTCAAAAA-TTTTCGTG
*
66952742 TTTTCTAAAAATTTTTGTG
1 -TTTC-AAAAATTTTCGTG
66952761 TTTCAAAAATTTTCGTG
1 TTTCAAAAATTTTCGTG
* * *
66952778 TTTTCAAATATTTTCATAT
1 -TTTCAAAAATTTTCGT-G
66952797 TTTCAAAAATTTTCGTG
1 TTTCAAAAATTTTCGTG
* *
66952814 TTTTCAATAATTCTCGTG
1 -TTTCAAAAATTTTCGTG
*
66952832 TTTCACAAA-TTTCAGTG
1 TTTCAAAAATTTTC-GTG
* *
66952849 CTTTAAAAAATTTTGCACT-
1 -TTTCAAAAATTTT-C-GTG
**
66952868 TTAAAAAAAAATTCTT-GTG
1 TT--TCAAAAATT-TTCGTG
*
66952887 TTTCAAAAATTGTCGTG
1 TTTCAAAAATTTTCGTG
*
66952904 TTTCAAAAATCTTCGTG
1 TTTCAAAAATTTTCGTG
*
66952921 TTTCCAAAAATTTTCGGG
1 TTT-CAAAAATTTTCGTG
*
66952939 TTTTCAAAAATTCTCGTG
1 -TTTCAAAAATTTTCGTG
*
66952957 ATTCAAAAATTTTCGTG
1 TTTCAAAAATTTTCGTG
66952974 TTT
1 TTT
66952977 TTTAAAAAAA
Statistics
Matches: 229, Mismatches: 38, Indels: 40
0.75 0.12 0.13
Matches are distributed among these distances:
16 7 0.03
17 92 0.40
18 94 0.41
19 18 0.08
20 16 0.07
21 2 0.01
ACGTcount: A:0.31, C:0.13, G:0.12, T:0.45
Consensus pattern (17 bp):
TTTCAAAAATTTTCGTG
Found at i:66952972 original size:53 final size:53
Alignment explanation
Indices: 66952670--66952977 Score: 252
Period size: 53 Copynumber: 5.8 Consensus size: 53
66952660 AAACTCAACA
* * *
66952670 TGTTTTCAAAAATTC-CGGTGTTTCAAAAATTTACGTGTTTTC-AAAATTCTAG
1 TGTTTTCAAAAATTCTC-GTGTTTCAAAAATTTTCGTGTTTTCAAAAATTTTCG
* * *
66952722 TG-ATTCAAAAAGTTTTCGTGTTTTCTAAAAATTTTTGTG-TTTCAAAAATTTTCG
1 TGTTTTCAAAAA-TTCTCGTG-TTTC-AAAAATTTTCGTGTTTTCAAAAATTTTCG
* * * * * *
66952776 TGTTTTCAAATATTTTCATATTTTCAAAAATTTTCGTGTTTTCAATAATTCTCG
1 TGTTTTCAAAAATTCTCGT-GTTTCAAAAATTTTCGTGTTTTCAAAAATTTTCG
* * ** ** ** *
66952830 TG-TTTCACAAATT-TCAGTGCTTTAAAAAATTTT-GCACTTTAAAAAAAAATTCT
1 TGTTTTCAAAAATTCTC-GTG-TTTCAAAAATTTTCG-TGTTTTCAAAAATTTTCG
* * *
66952883 TGTGTTTCAAAAATTGTCGTGTTTCAAAAATCTTCGTGTTTCCAAAAATTTTCG
1 TGT-TTTCAAAAATTCTCGTGTTTCAAAAATTTTCGTGTTTTCAAAAATTTTCG
* *
66952937 GGTTTTCAAAAATTCTCGTGATTCAAAAATTTTCGTGTTTT
1 TGTTTTCAAAAATTCTCGTGTTTCAAAAATTTTCGTGTTTT
66952978 TTAAAAAAAA
Statistics
Matches: 199, Mismatches: 42, Indels: 29
0.74 0.16 0.11
Matches are distributed among these distances:
51 8 0.04
52 10 0.05
53 88 0.44
54 70 0.35
55 21 0.11
56 2 0.01
ACGTcount: A:0.31, C:0.13, G:0.12, T:0.45
Consensus pattern (53 bp):
TGTTTTCAAAAATTCTCGTGTTTCAAAAATTTTCGTGTTTTCAAAAATTTTCG
Found at i:66952984 original size:36 final size:35
Alignment explanation
Indices: 66952673--66952977 Score: 191
Period size: 35 Copynumber: 8.6 Consensus size: 35
66952663 CTCAACATGT
*
66952673 TTTCAAAAA-TTCCG-GTGTTTCAAAAATT-TACGTG
1 TTTCAAAAATTTTCGTGT-TTTCAAAAATTCT-CGTG
* * * *
66952707 TTTTC-AAAATTCTAGTG-ATTCAAAAAGTTTTCGTG
1 -TTTCAAAAATTTTCGTGTTTTCAAAAA-TTCTCGTG
* *
66952742 TTTTCTAAAAATTTTTGTG-TTTCAAAAATTTTCGTG
1 -TTTC-AAAAATTTTCGTGTTTTCAAAAATTCTCGTG
* * * *
66952778 TTTTCAAATATTTTCATATTTTCAAAAATTTTCGTG
1 -TTTCAAAAATTTTCGTGTTTTCAAAAATTCTCGTG
* * *
66952814 TTTTCAATAATTCTCGTG-TTTCACAAATT-TCAGTG
1 -TTTCAAAAATTTTCGTGTTTTCAAAAATTCTC-GTG
* * *** *
66952849 CTTTAAAAAATTTTGCACT-TTAAAAAAAAATTCTTGTG
1 -TTTCAAAAATTTT-C-GTGTT-TTCAAAAATTCTCGTG
*
66952887 TTTCAAAAATTGTCGTG-TTTCAAAAA-TCTTCGTG
1 TTTCAAAAATTTTCGTGTTTTCAAAAATTC-TCGTG
*
66952921 TTTCCAAAAATTTTCGGGTTTTCAAAAATTCTCGTG
1 TTT-CAAAAATTTTCGTGTTTTCAAAAATTCTCGTG
*
66952957 ATTCAAAAATTTTCGTGTTTT
1 TTTCAAAAATTTTCGTGTTTT
66952978 TTAAAAAAAA
Statistics
Matches: 214, Mismatches: 38, Indels: 36
0.74 0.13 0.12
Matches are distributed among these distances:
33 2 0.01
34 26 0.12
35 80 0.37
36 63 0.29
37 33 0.15
38 9 0.04
39 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.45
Consensus pattern (35 bp):
TTTCAAAAATTTTCGTGTTTTCAAAAATTCTCGTG
Found at i:66952992 original size:36 final size:36
Alignment explanation
Indices: 66952890--66952992 Score: 84
Period size: 36 Copynumber: 2.9 Consensus size: 36
66952880 TCTTGTGTTT
* * *** *
66952890 CAAAAATTGTCGTG-TTTCAAAAATCTTCGTGTTTC
1 CAAAAATTTTCGGGTTTTCAAAAAAAATCGTGATTC
***
66952925 CAAAAATTTTCGGGTTTTCAAAAATTCTCGTGATT-
1 CAAAAATTTTCGGGTTTTCAAAAAAAATCGTGATTC
* *
66952960 CAAAAATTTTCGTGTTTTTTAAAAAAAATCGTG
1 CAAAAATTTTCG-GGTTTTCAAAAAAAATCGTG
66952993 TTTTTTAAAC
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
35 24 0.43
36 32 0.57
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.40
Consensus pattern (36 bp):
CAAAAATTTTCGGGTTTTCAAAAAAAATCGTGATTC
Found at i:66953310 original size:30 final size:30
Alignment explanation
Indices: 66953276--66953334 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
66953266 TACTTCTGTT
* * *
66953276 TCAAAATTATATTTTGACCCCTAAATTTTC
1 TCAAAATTACACTTTGACCCCAAAATTTTC
*
66953306 TCAAAATTACACTTTGGCCCCAAAATTTT
1 TCAAAATTACACTTTGACCCCAAAATTTT
66953335 TGCTGCAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.22, G:0.05, T:0.39
Consensus pattern (30 bp):
TCAAAATTACACTTTGACCCCAAAATTTTC
Found at i:66953674 original size:4 final size:4
Alignment explanation
Indices: 66953665--66953736 Score: 75
Period size: 4 Copynumber: 19.5 Consensus size: 4
66953655 GAGAAGAGAA
*
66953665 AAAG AAAG AAAG AAAA AAAG -AAG AAAG AAAG AAAG -AAG AAAG -AAG
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG
* *
66953710 AAAG -AAG AAA- AGAG TAAG -AAG AAAG AA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AA
66953737 GAAGAAAAAT
Statistics
Matches: 57, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
3 17 0.30
4 40 0.70
ACGTcount: A:0.74, C:0.00, G:0.25, T:0.01
Consensus pattern (4 bp):
AAAG
Found at i:66953693 original size:7 final size:7
Alignment explanation
Indices: 66953656--66953739 Score: 91
Period size: 7 Copynumber: 11.6 Consensus size: 7
66953646 TGAACGAAGG
66953656 AGAAGAGA
1 AGAA-AGA
66953664 A-AAAGAA
1 AGAAAG-A
66953671 AGAAAGAA
1 AGAAAG-A
*
66953679 AAAAAGA
1 AGAAAGA
66953686 AGAAAGAA
1 AGAAAG-A
66953694 AGAAAGA
1 AGAAAGA
66953701 AGAAAGA
1 AGAAAGA
66953708 AGAAAGA
1 AGAAAGA
66953715 AGAAA-A
1 AGAAAGA
*
66953721 GAGTAAGA
1 -AGAAAGA
66953729 AGAAAGA
1 AGAAAGA
66953736 AGAA
1 AGAA
66953740 GAAAAATGAA
Statistics
Matches: 67, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
6 3 0.04
7 44 0.66
8 20 0.30
ACGTcount: A:0.73, C:0.00, G:0.26, T:0.01
Consensus pattern (7 bp):
AGAAAGA
Found at i:66953721 original size:15 final size:15
Alignment explanation
Indices: 66953664--66953739 Score: 79
Period size: 15 Copynumber: 5.1 Consensus size: 15
66953654 GGAGAAGAGA
*
66953664 AAAAGAAAGAAAGAAA
1 AAAAG-AAGAAAGAAG
66953680 AAAAGAAGAAAGAA-
1 AAAAGAAGAAAGAAG
66953694 AGAAAGAAGAAAGAAG
1 A-AAAGAAGAAAGAAG
66953710 -AAAGAAG-AA-AAG
1 AAAAGAAGAAAGAAG
*
66953722 AGTAAGAAGAAAGAAG
1 A-AAAGAAGAAAGAAG
66953738 AA
1 AA
66953740 GAAAAATGAA
Statistics
Matches: 52, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
12 3 0.06
13 2 0.04
14 14 0.27
15 24 0.46
16 9 0.17
ACGTcount: A:0.74, C:0.00, G:0.25, T:0.01
Consensus pattern (15 bp):
AAAAGAAGAAAGAAG
Found at i:66954042 original size:24 final size:24
Alignment explanation
Indices: 66954009--66954063 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 24
66953999 CAACAGGCCA
66954009 AAAAAGAAAAAGAAG-AGAAAGAAAG
1 AAAAA-AAAAAGAAGAAG-AAGAAAG
66954034 AAAAAAAAAAGAAGAAGAAGAAAG
1 AAAAAAAAAAGAAGAAGAAGAAAG
*
66954058 AGAAAA
1 AAAAAA
66954064 GGTTTCAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 21 0.75
25 7 0.25
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (24 bp):
AAAAAAAAAAGAAGAAGAAGAAAG
Found at i:66954195 original size:16 final size:16
Alignment explanation
Indices: 66954152--66954206 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 16
66954142 TTAATACTCG
* *
66954152 TATTTTTATATTATTA
1 TATTTTTGTATTTTTA
*
66954168 GTACTTTATGTATTTTTA
1 -TA-TTTTTGTATTTTTA
66954186 TATTTTTGTA--TTTA
1 TATTTTTGTATTTTTA
66954200 TATTTTT
1 TATTTTT
66954207 AATTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
14 11 0.33
16 7 0.21
17 4 0.12
18 11 0.33
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.69
Consensus pattern (16 bp):
TATTTTTGTATTTTTA
Found at i:66954390 original size:20 final size:20
Alignment explanation
Indices: 66954365--66954406 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
66954355 AAAAATATTC
*
66954365 AAAAAATTTCGTGT-TTTCA
1 AAAAAAATTCGTGTGTTTCA
*
66954384 AAAAAAATTCTTGTGTTTCA
1 AAAAAAATTCGTGTGTTTCA
66954404 AAA
1 AAA
66954407 TTTTTATGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.38
Consensus pattern (20 bp):
AAAAAAATTCGTGTGTTTCA
Found at i:66954408 original size:16 final size:17
Alignment explanation
Indices: 66954387--66954425 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
66954377 GTTTTCAAAA
*
66954387 AAAATTCTTGTGT-TTC
1 AAAATTCTTATGTCTTC
*
66954403 AAAATTTTTATGTCTTC
1 AAAATTCTTATGTCTTC
66954420 AAAATT
1 AAAATT
66954426 TTTTTTCTCG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.33, C:0.10, G:0.08, T:0.49
Consensus pattern (17 bp):
AAAATTCTTATGTCTTC
Found at i:66954420 original size:17 final size:16
Alignment explanation
Indices: 66954387--66954428 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
66954377 GTTTTCAAAA
* *
66954387 AAAATTCTTGTGTTTC
1 AAAATTTTTATGTTTC
66954403 AAAATTTTTATGTCTTC
1 AAAATTTTTATGT-TTC
66954420 AAAATTTTT
1 AAAATTTTT
66954429 TTTCTCGTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 11 0.48
17 12 0.52
ACGTcount: A:0.31, C:0.10, G:0.07, T:0.52
Consensus pattern (16 bp):
AAAATTTTTATGTTTC
Found at i:66954639 original size:17 final size:17
Alignment explanation
Indices: 66954605--66954908 Score: 231
Period size: 18 Copynumber: 17.2 Consensus size: 17
66954595 CTCAACATGT
*
66954605 TTTCAAAAA-TTCCGGTG
1 TTTCAAAAATTTTC-GTG
*
66954622 TTTCAAAAATTTACGTG
1 TTTCAAAAATTTTCGTG
* *
66954639 TTTTC-AAAATTCTAGTG
1 -TTTCAAAAATTTTCGTG
*
66954656 ATTCAAAAAGTTTTCGTG
1 TTTCAAAAA-TTTTCGTG
*
66954674 TTTTCTAAAAATTTTTGTG
1 -TTTC-AAAAATTTTCGTG
66954693 TTTCAAAAATTTTCGTG
1 TTTCAAAAATTTTCGTG
* * *
66954710 TTTTCAAATATTTTCATAT
1 -TTTCAAAAATTTTCGT-G
66954729 TTTCAAAAATTTTCGTG
1 TTTCAAAAATTTTCGTG
* *
66954746 TTTTCAATAATTCTCGTG
1 -TTTCAAAAATTTTCGTG
*
66954764 TTTCACAAA-TTTCAGTG
1 TTTCAAAAATTTTC-GTG
* *
66954781 CTTTAAAAAATTTTGCACT-
1 -TTTCAAAAATTTT-C-GTG
**
66954800 TTAAAAAAAAATTCTT-GTG
1 TT--TCAAAAATT-TTCGTG
*
66954819 TTTCAAAAATTGTCGTG
1 TTTCAAAAATTTTCGTG
*
66954836 TTTCAAAAATCTTCGTG
1 TTTCAAAAATTTTCGTG
*
66954853 TTTCCAAAAATTTTCGGG
1 TTT-CAAAAATTTTCGTG
*
66954871 TTTTCAAAAATTCTCGTG
1 -TTTCAAAAATTTTCGTG
*
66954889 ATTCAAAAATTTTCGTG
1 TTTCAAAAATTTTCGTG
66954906 TTT
1 TTT
66954909 TTTAAAAAAA
Statistics
Matches: 229, Mismatches: 38, Indels: 40
0.75 0.12 0.13
Matches are distributed among these distances:
16 7 0.03
17 92 0.40
18 94 0.41
19 18 0.08
20 16 0.07
21 2 0.01
ACGTcount: A:0.31, C:0.13, G:0.12, T:0.45
Consensus pattern (17 bp):
TTTCAAAAATTTTCGTG
Found at i:66954904 original size:53 final size:53
Alignment explanation
Indices: 66954602--66954909 Score: 252
Period size: 53 Copynumber: 5.8 Consensus size: 53
66954592 AAACTCAACA
* * *
66954602 TGTTTTCAAAAATTC-CGGTGTTTCAAAAATTTACGTGTTTTC-AAAATTCTAG
1 TGTTTTCAAAAATTCTC-GTGTTTCAAAAATTTTCGTGTTTTCAAAAATTTTCG
* * *
66954654 TG-ATTCAAAAAGTTTTCGTGTTTTCTAAAAATTTTTGTG-TTTCAAAAATTTTCG
1 TGTTTTCAAAAA-TTCTCGTG-TTTC-AAAAATTTTCGTGTTTTCAAAAATTTTCG
* * * * * *
66954708 TGTTTTCAAATATTTTCATATTTTCAAAAATTTTCGTGTTTTCAATAATTCTCG
1 TGTTTTCAAAAATTCTCGT-GTTTCAAAAATTTTCGTGTTTTCAAAAATTTTCG
* * ** ** ** *
66954762 TG-TTTCACAAATT-TCAGTGCTTTAAAAAATTTT-GCACTTTAAAAAAAAATTCT
1 TGTTTTCAAAAATTCTC-GTG-TTTCAAAAATTTTCG-TGTTTTCAAAAATTTTCG
* * *
66954815 TGTGTTTCAAAAATTGTCGTGTTTCAAAAATCTTCGTGTTTCCAAAAATTTTCG
1 TGT-TTTCAAAAATTCTCGTGTTTCAAAAATTTTCGTGTTTTCAAAAATTTTCG
* *
66954869 GGTTTTCAAAAATTCTCGTGATTCAAAAATTTTCGTGTTTT
1 TGTTTTCAAAAATTCTCGTGTTTCAAAAATTTTCGTGTTTT
66954910 TTAAAAAAAT
Statistics
Matches: 199, Mismatches: 42, Indels: 29
0.74 0.16 0.11
Matches are distributed among these distances:
51 8 0.04
52 10 0.05
53 88 0.44
54 70 0.35
55 21 0.11
56 2 0.01
ACGTcount: A:0.31, C:0.13, G:0.12, T:0.45
Consensus pattern (53 bp):
TGTTTTCAAAAATTCTCGTGTTTCAAAAATTTTCGTGTTTTCAAAAATTTTCG
Found at i:66954916 original size:36 final size:35
Alignment explanation
Indices: 66954605--66954909 Score: 191
Period size: 35 Copynumber: 8.6 Consensus size: 35
66954595 CTCAACATGT
*
66954605 TTTCAAAAA-TTCCG-GTGTTTCAAAAATT-TACGTG
1 TTTCAAAAATTTTCGTGT-TTTCAAAAATTCT-CGTG
* * * *
66954639 TTTTC-AAAATTCTAGTG-ATTCAAAAAGTTTTCGTG
1 -TTTCAAAAATTTTCGTGTTTTCAAAAA-TTCTCGTG
* *
66954674 TTTTCTAAAAATTTTTGTG-TTTCAAAAATTTTCGTG
1 -TTTC-AAAAATTTTCGTGTTTTCAAAAATTCTCGTG
* * * *
66954710 TTTTCAAATATTTTCATATTTTCAAAAATTTTCGTG
1 -TTTCAAAAATTTTCGTGTTTTCAAAAATTCTCGTG
* * *
66954746 TTTTCAATAATTCTCGTG-TTTCACAAATT-TCAGTG
1 -TTTCAAAAATTTTCGTGTTTTCAAAAATTCTC-GTG
* * *** *
66954781 CTTTAAAAAATTTTGCACT-TTAAAAAAAAATTCTTGTG
1 -TTTCAAAAATTTT-C-GTGTT-TTCAAAAATTCTCGTG
*
66954819 TTTCAAAAATTGTCGTG-TTTCAAAAA-TCTTCGTG
1 TTTCAAAAATTTTCGTGTTTTCAAAAATTC-TCGTG
*
66954853 TTTCCAAAAATTTTCGGGTTTTCAAAAATTCTCGTG
1 TTT-CAAAAATTTTCGTGTTTTCAAAAATTCTCGTG
*
66954889 ATTCAAAAATTTTCGTGTTTT
1 TTTCAAAAATTTTCGTGTTTT
66954910 TTAAAAAAAT
Statistics
Matches: 214, Mismatches: 38, Indels: 36
0.74 0.13 0.12
Matches are distributed among these distances:
33 2 0.01
34 26 0.12
35 80 0.37
36 63 0.29
37 33 0.15
38 9 0.04
39 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.45
Consensus pattern (35 bp):
TTTCAAAAATTTTCGTGTTTTCAAAAATTCTCGTG
Found at i:66954923 original size:35 final size:36
Alignment explanation
Indices: 66954822--66954923 Score: 93
Period size: 35 Copynumber: 2.9 Consensus size: 36
66954812 TCTTGTGTTT
* * ** *
66954822 CAAAAATTGTCGTG-TTTCAAAAATCTTCGTGTTTC
1 CAAAAATTTTCGGGTTTTCAAAAATAATCGTGATTC
**
66954857 CAAAAATTTTCGGGTTTTCAAAAATTCTCGTGATT-
1 CAAAAATTTTCGGGTTTTCAAAAATAATCGTGATTC
* *
66954892 CAAAAATTTTCGTGTTTTTTAAAAA-AATCGTG
1 CAAAAATTTTCG-GGTTTTCAAAAATAATCGTG
66954924 TTTTTTAAAC
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
35 29 0.52
36 27 0.48
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (36 bp):
CAAAAATTTTCGGGTTTTCAAAAATAATCGTGATTC
Found at i:66954927 original size:53 final size:52
Alignment explanation
Indices: 66954804--66954927 Score: 131
Period size: 53 Copynumber: 2.3 Consensus size: 52
66954794 TGCACTTTAA
* * *
66954804 AAAAAAATTCTTGTGTTTCAAAAATTGTCGTGTTTCAAAAATCTTCGTGTTTCC
1 AAAAAAA-TCGTGT-TTTCAAAAATTCTCGTGATTCAAAAATCTTCGTGTTTCC
** * * **
66954858 AAAAATTTTCGGGTTTTCAAAAATTCTCGTGATTCAAAAATTTTCGTGTTTTTT
1 AAAAA-AATCGTGTTTTCAAAAATTCTCGTGATTCAAAAATCTTCGTG-TTTCC
66954912 AAAAAAATCGTGTTTT
1 AAAAAAATCGTGTTTT
66954928 TTAAACAAGT
Statistics
Matches: 56, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
53 39 0.70
54 17 0.30
ACGTcount: A:0.32, C:0.12, G:0.13, T:0.43
Consensus pattern (52 bp):
AAAAAAATCGTGTTTTCAAAAATTCTCGTGATTCAAAAATCTTCGTGTTTCC
Found at i:66955434 original size:27 final size:26
Alignment explanation
Indices: 66955391--66955448 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
66955381 AGTTTTATAA
* * * *
66955391 ATTCTAGTTTTCTAATTGATTAACCC
1 ATTCTAGCTTTCCAATTAATCAACCC
66955417 ATTCTATGCTTTCCAATTAATCAACCC
1 ATTCTA-GCTTTCCAATTAATCAACCC
66955444 -TTCTA
1 ATTCTA
66955449 ACAAGTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 11 0.41
27 16 0.59
ACGTcount: A:0.28, C:0.24, G:0.05, T:0.43
Consensus pattern (26 bp):
ATTCTAGCTTTCCAATTAATCAACCC
Found at i:66962046 original size:78 final size:77
Alignment explanation
Indices: 66961922--66962613 Score: 684
Period size: 80 Copynumber: 8.8 Consensus size: 77
66961912 TCAAGAAATA
* ** * *
66961922 TTTTTCAATTTCTGTTTTTT-TTAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGGTC
1 TTTTTAAATTTCTGTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
66961986 ATGCCGAGGTATT
66 ATGCCGAGGTA-T
* * **
66961999 TCTTTTAAATTTCTGTTTTTTC-AAAAGTCAACTCATATTACGAGAGGTGAGTTGAGCCTCTGAC
1 T-TTTTAAATTTCTGTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGG
* *
66962063 ACATGTCGAGGTATT
64 TCATGCCGAGGTA-T
* * *
66962078 TCTTTTAAATTTCTATTTTTCCAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
1 T-TTTTAAATTTCTGTTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
* *
66962143 TCACGCTGAGGTA-
64 TCATGCCGAGGTAT
*
66962156 TTTTTCAATTTCTG-TTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
1 TTTTTAAATTTCTGTTTTTTC---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
66962220 GTCACATGCCGAGGTAT
63 GT--CATGCCGAGGTAT
* * *
66962237 TTCATTTAAATTTCT-ATTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGG
1 TT--TTTAAATTTCTGTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
* *
66962301 TCACACGCTGAGGTAT
64 T--CATGCCGAGGTAT
* * **
66962317 TTTTT-AATTTATG-CTTTTCAAAAAAAATCAACTCATATTAAGAGAGGTGAGTTGAGCCTCGGG
1 TTTTTAAATTTCTGTTTTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
* *
66962380 CACATGCTGAGGTA-
64 -TCATGCCGAGGTAT
* *
66962394 TTTTTCAATTTTTGTTTTTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
1 TTTTTAAATTTCTG-TTTTTT-C-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
* *
66962459 GTCACGCTGAGGTA-
63 GTCATGCCGAGGTAT
* * * * * * * *
66962473 TTTTTCAATTTATG-CTTTTCAAACAATCAACTCATATTGTGAAAGGTGAGTTGAGCATCAGGCT
1 TTTTTAAATTTCTGTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGT
*
66962537 CATACCGAGGTATT
65 CATGCCGAGGTA-T
* * *
66962551 TTTTTAAAATTTCTGTTCTTTCAAAAAAAATCAACTCATATTGCTAGAGGTGAGTTCAGCCTC
1 TTTTT-AAATTTCTGTTTTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
66962614 AAGTCACACG
Statistics
Matches: 521, Mismatches: 66, Indels: 51
0.82 0.10 0.08
Matches are distributed among these distances:
75 35 0.07
76 18 0.03
77 31 0.06
78 122 0.23
79 103 0.20
80 126 0.24
81 38 0.07
82 33 0.06
83 15 0.03
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (77 bp):
TTTTTAAATTTCTGTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
ATGCCGAGGTAT
Found at i:66962235 original size:80 final size:78
Alignment explanation
Indices: 66961920--66962658 Score: 741
Period size: 78 Copynumber: 9.4 Consensus size: 78
66961910 TTTCAAGAAA
*** * *
66961920 TATTTTTCAATTTCTGTTTTT-TTTAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGG
1 TATTTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
66961984 T--CATGCCGAGG
66 TCACATGCCGAGG
* * *
66961995 TATTTCTTTTAAATTTCTGTTTTTTC--AAAAGTCAACTCATATTACGAGAGGTGAGTTGAGCCT
1 TA--T-TTTTCAATTTCTG-TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* * *
66962058 C-TGACACATGTCGAGG
62 CGGGTCACATGCCGAGG
* * *
66962074 TATTTCTTTTAAATTTCTATTTTTCCAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TA--T-TTTTCAATTTCTGTTTTT-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
*
66962139 CGGGTCAC--GCTGAGG
62 CGGGTCACATGCCGAGG
66962154 TATTTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
1 TATTTTTCAATTTCTGTTTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
66962219 GGTCACATGCCGAGG
64 GGTCACATGCCGAGG
* * *
66962234 TATTTCATTTAAATTTCTATTTTT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
1 TA-TT--TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* *
66962298 GGGTCACACGCTGAGG
63 GGGTCACATGCCGAGG
* * * **
66962314 TATTTTTTAATTTATGCTTTTCAAAAAAAATCAACTCATATTAAGAGAGGTGAGTTGAGCCTCGG
1 TATTTTTCAATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
*
66962379 G-CACATGCTGAGG
65 GTCACATGCCGAGG
*
66962392 TATTTTTCAATTTTTGTTTTTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
1 TATTTTTCAATTTCTG--TTTTT-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
*
66962457 GGGTCAC--GCTGAGG
63 GGGTCACATGCCGAGG
* * * * * * *
66962471 TATTTTTCAATTTATGCTTTTC-AAACAATCAACTCATATTGTGAAAGGTGAGTTGAGCATCAGG
1 TATTTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
* *
66962535 -CTCATACCGAGG
66 TCACATGCCGAGG
* * *
66962547 TATTTTTTTAAAATTTCTGTTCTTTCAAAAAAAATCAACTCATATTGCTAGAGGTGAGTTCAGCC
1 TA--TTTTT-CAATTTCTGTT-TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
** * * **
66962612 TCAAGTCACACGTCGATA
61 TCGGGTCACATGCCGAGG
* * *
66962630 TATTTTTCAATTTATGTGTCTCAAAAAAA
1 TATTTTTCAATTTCTGTTTTTCAAAAAAA
66962659 AAAGGATCGC
Statistics
Matches: 563, Mismatches: 68, Indels: 63
0.81 0.10 0.09
Matches are distributed among these distances:
74 2 0.00
75 39 0.07
76 9 0.02
77 35 0.06
78 135 0.24
79 108 0.19
80 127 0.23
81 46 0.08
82 39 0.07
83 23 0.04
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (78 bp):
TATTTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
TCACATGCCGAGG
Found at i:66962263 original size:159 final size:157
Alignment explanation
Indices: 66961944--66962659 Score: 854
Period size: 159 Copynumber: 4.5 Consensus size: 157
66961934 TGTTTTTTTT
* * * * *
66961944 AAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGGTCATGCCGAGGTATTTCTTTTAAAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTA--T-TTTTCAAT
* * * * *
66962009 TTCTGTTTTTTC---AAAAGTCAACTCATATTACGAGAGGTGAGTTGAGCCTCTGACACATGTCG
63 TTATG-TTTTTCAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGCACATGCCG
66962071 AGGTATTTCTTTTAAATTTCTATTTTTCCAAA
127 AGGTATTT-TTTTAAATTTCTATTTTTCCAAA
* *
66962103 AAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTCAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTCAATTTA
*
66962168 TGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAG
66 TGTTTTTC-AAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGG-CACATGCCGAG
*
66962233 GTATTTCATTTAAATTTCTATTTTT--AAA
129 GTATTT-TTTTAAATTTCTATTTTTCCAAA
* *
66962261 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACACGCTGAGGTATTTTTTAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT--CACGCTGAGGTATTTTTCAATT
* * *
66962326 TATGCTTTTCAAAAAAAATCAACTCATATTAAGAGAGGTGAGTTGAGCCTCGGGCACATGCTGAG
64 TATGTTTTTCAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGCACATGCCGAG
* * * *
66962391 GTA-TTTTTCAATTTTTGTTTTTTTCCAAA
129 GTATTTTTTTAA-ATTTCTATTTTTCCAAA
66962420 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTCAATTTA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTCAATTTA
* * ** * * * * *
66962485 TGCTTTTC--AAACAATCAACTCATATTGTGAAAGGTGAGTTGAGCATCAGGCTCATACCGAGGT
66 TGTTTTTCAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGCACATGCCGAGGT
* *
66962548 ATTTTTTTAAAATTTCTGTTCTTTCAAAA
131 ATTTTTTT-AAATTTCTATT-TTTCCAAA
* * ** * **
66962577 AAAATCAACTCATATTGCTAGAGGTGAGTTCAGCCTCAAGTCACACGTCGATATATTTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGC-T-GAGGTATTTTTCAATT
* *
66962642 TATGTGTCTCAAAAAAAA
64 TATGTTTTTCAAAAAAAA
66962660 AAGGATCGCA
Statistics
Matches: 488, Mismatches: 52, Indels: 32
0.85 0.09 0.06
Matches are distributed among these distances:
155 53 0.11
156 27 0.06
157 93 0.19
158 56 0.11
159 191 0.39
160 63 0.13
161 5 0.01
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.34
Consensus pattern (157 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTCAATTTA
TGTTTTTCAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGCACATGCCGAGGT
ATTTTTTTAAATTTCTATTTTTCCAAA
Found at i:66962878 original size:29 final size:30
Alignment explanation
Indices: 66962839--66962966 Score: 105
Period size: 30 Copynumber: 4.3 Consensus size: 30
66962829 GTTTTTTAAA
* *
66962839 AAAATTACATTTCGTCTCCTAAATTTT-TT
1 AAAATTACATTTCGACCCCTAAATTTTCTT
* *
66962868 AAAATTGCATTTTGACCCCTAAATTTTCTT
1 AAAATTACATTTCGACCCCTAAATTTTCTT
* ** ** * ** *
66962898 GAAATTATGTTTTAACCACTAGGTTTTTTT
1 AAAATTACATTTCGACCCCTAAATTTTCTT
* * *
66962928 TAAATTATATTTTGACCCCTAAATTTTCTT
1 AAAATTACATTTCGACCCCTAAATTTTCTT
66962958 AAAATTACA
1 AAAATTACA
66962967 CATTGGCCCC
Statistics
Matches: 76, Mismatches: 22, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
29 23 0.30
30 53 0.70
ACGTcount: A:0.32, C:0.16, G:0.06, T:0.46
Consensus pattern (30 bp):
AAAATTACATTTCGACCCCTAAATTTTCTT
Found at i:66962963 original size:30 final size:30
Alignment explanation
Indices: 66962856--66962964 Score: 121
Period size: 30 Copynumber: 3.7 Consensus size: 30
66962846 CATTTCGTCT
**
66962856 CCTAAATTTT-TTAAAATTGCATTTTGACC
1 CCTAAATTTTCTTAAAATTATATTTTGACC
* * *
66962885 CCTAAATTTTCTTGAAATTATGTTTTAACC
1 CCTAAATTTTCTTAAAATTATATTTTGACC
* ** * *
66962915 ACTAGGTTTTTTTTAAATTATATTTTGACC
1 CCTAAATTTTCTTAAAATTATATTTTGACC
66962945 CCTAAATTTTCTTAAAATTA
1 CCTAAATTTTCTTAAAATTA
66962965 CACATTGGCC
Statistics
Matches: 62, Mismatches: 17, Indels: 1
0.77 0.21 0.01
Matches are distributed among these distances:
29 10 0.16
30 52 0.84
ACGTcount: A:0.31, C:0.15, G:0.06, T:0.48
Consensus pattern (30 bp):
CCTAAATTTTCTTAAAATTATATTTTGACC
Found at i:66963320 original size:4 final size:4
Alignment explanation
Indices: 66963313--66963370 Score: 63
Period size: 4 Copynumber: 15.8 Consensus size: 4
66963303 GAGAAGAGAA
* *
66963313 AAAG AAAG AAA- AAAT AAAG -AAG AAAG AAAG AAA- AAAT AAAG -AAG
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG
66963357 AAAG AAAG -AAG AAA
1 AAAG AAAG AAAG AAA
66963371 AGGGGAAGAA
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
3 15 0.32
4 32 0.68
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.03
Consensus pattern (4 bp):
AAAG
Found at i:66963325 original size:11 final size:11
Alignment explanation
Indices: 66963306--66963372 Score: 80
Period size: 11 Copynumber: 5.9 Consensus size: 11
66963296 AATGAAGGAG
66963306 AAGAGAAAAAGA
1 AAGA-AAAAAGA
*
66963318 AAGAAAAAATA
1 AAGAAAAAAGA
*
66963329 AAGAAGAAAGA
1 AAGAAAAAAGA
*
66963340 AAGAAAAAATA
1 AAGAAAAAAGA
*
66963351 AAGAAGAAAGA
1 AAGAAAAAAGA
66963362 AAGAAGAAAAG
1 AAGAA-AAAAG
66963373 GGGAAGAAGA
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
11 38 0.83
12 8 0.17
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (11 bp):
AAGAAAAAAGA
Found at i:66963378 original size:22 final size:23
Alignment explanation
Indices: 66963309--66963396 Score: 112
Period size: 22 Copynumber: 3.9 Consensus size: 23
66963299 GAAGGAGAAG
66963309 AGAA-AAAGAAAGAA-AAAATAA
1 AGAAGAAAGAAAGAAGAAAATAA
66963330 AGAAGAAAGAAAGAA-AAAATAA
1 AGAAGAAAGAAAGAAGAAAATAA
**
66963352 AGAAGAAAGAAAGAAGAAAAGGGGA
1 AGAAGAAAGAAAGAAGAAAA--TAA
66963377 AGAAGAAAG-AAGAAGAAAAT
1 AGAAGAAAGAAAGAAGAAAAT
66963397 TATTTTTTAA
Statistics
Matches: 60, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
21 4 0.07
22 32 0.53
23 4 0.07
24 10 0.17
25 10 0.17
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.03
Consensus pattern (23 bp):
AGAAGAAAGAAAGAAGAAAATAA
Found at i:66963677 original size:20 final size:19
Alignment explanation
Indices: 66963629--66963680 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 19
66963619 CCAACAGGCC
*
66963629 AAAAAAGAAAAAGAAGAGA
1 AAAAAAGAAAAAAAAGAGA
* **
66963648 AAGACGGAAAAAAACAGAGA
1 AAAAAAGAAAAAAA-AGAGA
66963668 AAAAAAGAAAAAA
1 AAAAAAGAAAAAA
66963681 GAAAAAAGAA
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
19 10 0.40
20 15 0.60
ACGTcount: A:0.77, C:0.04, G:0.19, T:0.00
Consensus pattern (19 bp):
AAAAAAGAAAAAAAAGAGA
Found at i:66963687 original size:17 final size:19
Alignment explanation
Indices: 66963657--66963704 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
66963647 AAAGACGGAA
*
66963657 AAAAACAGAGAAAA-AAAG
1 AAAAACAGAAAAAAGAAAG
*
66963675 AAAAA-AGAAAAAAGAAGG
1 AAAAACAGAAAAAAGAAAG
*
66963693 AAAAAGAGAAAA
1 AAAAACAGAAAA
66963705 GGGTTCAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 7 0.27
18 13 0.50
19 6 0.23
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (19 bp):
AAAAACAGAAAAAAGAAAG
Found at i:66963705 original size:17 final size:17
Alignment explanation
Indices: 66963631--66963705 Score: 64
Period size: 17 Copynumber: 4.3 Consensus size: 17
66963621 AACAGGCCAA
*
66963631 AAAAGAA-AAAGAAGAG
1 AAAAGAAGAAAAAAGAG
66963647 AAAGACGGAA-AAAAACAGAG
1 AAA-A--GAAGAAAAA-AGAG
* *
66963667 AAAAAAAGAAAAAAGAA
1 AAAAGAAGAAAAAAGAG
*
66963684 AAAAGAAGGAAAAAGAG
1 AAAAGAAGAAAAAAGAG
66963701 AAAAG
1 AAAAG
66963706 GGTTCAATTT
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
16 3 0.06
17 25 0.52
18 5 0.10
19 8 0.17
20 7 0.15
ACGTcount: A:0.75, C:0.03, G:0.23, T:0.00
Consensus pattern (17 bp):
AAAAGAAGAAAAAAGAG
Found at i:66964041 original size:19 final size:20
Alignment explanation
Indices: 66964019--66964063 Score: 67
Period size: 18 Copynumber: 2.4 Consensus size: 20
66964009 ATAAAAAAAA
*
66964019 TTCAAAAAAAATTCGTGT-T
1 TTCAAAAAAAATTCCTGTGT
66964038 TTC-AAAAAAATTCCTGTGT
1 TTCAAAAAAAATTCCTGTGT
66964057 TTCAAAA
1 TTCAAAA
66964064 TTTTTGTGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 13 0.57
19 7 0.30
20 3 0.13
ACGTcount: A:0.42, C:0.13, G:0.09, T:0.36
Consensus pattern (20 bp):
TTCAAAAAAAATTCCTGTGT
Found at i:66964085 original size:20 final size:21
Alignment explanation
Indices: 66964060--66964103 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
66964050 CCTGTGTTTC
*
66964060 AAAATTTT-TGTGTCTTAAAA
1 AAAATTTTCCGTGTCTTAAAA
66964080 AAAATTTTCCCGTGTCTTAAAA
1 AAAATTTT-CCGTGTCTTAAAA
66964102 AA
1 AA
66964104 TATATTCGCG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 8 0.38
22 13 0.62
ACGTcount: A:0.41, C:0.11, G:0.09, T:0.39
Consensus pattern (21 bp):
AAAATTTTCCGTGTCTTAAAA
Found at i:66964267 original size:18 final size:18
Alignment explanation
Indices: 66964244--66964300 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
66964234 TTTGTGTAAA
66964244 AAAAATCCACATGTTTTC
1 AAAAATCCACATGTTTTC
*
66964262 AAAAATTCC-GATG-TTTC
1 AAAAA-TCCACATGTTTTC
** *
66964279 AAAAATTTACGTGTTTTC
1 AAAAATCCACATGTTTTC
66964297 AAAA
1 AAAA
66964301 TTCTAGTGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
16 1 0.03
17 11 0.35
18 16 0.52
19 3 0.10
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (18 bp):
AAAAATCCACATGTTTTC
Found at i:66964293 original size:17 final size:16
Alignment explanation
Indices: 66964258--66964559 Score: 167
Period size: 17 Copynumber: 17.2 Consensus size: 16
66964248 ATCCACATGT
*
66964258 TTTCAAAAATTCCGATG
1 TTTCAAAAATTTCG-TG
66964275 TTTCAAAAATTTACGTG
1 TTTCAAAAATTT-CGTG
*
66964292 TTTTC-AAAATTCTAGTG
1 -TTTCAAAAATT-TCGTG
*
66964309 ATTCAAAAAGTTTTCGTG
1 TTTCAAAAA--TTTCGTG
*
66964327 TTTTCTAAAAATTTTTGTG
1 -TTTC-AAAAA-TTTCGTG
* *
66964346 TTTCAAAATTTTTGTG
1 TTTCAAAAATTTCGTG
* *
66964362 TTTTCAAAAATTTTCATAT
1 -TTTCAAAAA-TTTCGT-G
66964381 TTTCAAAAATTTTCGTG
1 TTTCAAAAA-TTTCGTG
*
66964398 TTTTCAACAATTCTCGTG
1 -TTTCAAAAATT-TCGTG
*
66964416 TTTCACAAATTTCAGTG
1 TTTCAAAAATTTC-GTG
*
66964433 TTTTAAAAAAGTTTGCGCT-
1 -TTTCAAAAA-TTT-CG-TG
** *
66964452 TTAAAAAAAATTCTTGTG
1 TT-TCAAAAATT-TCGTG
66964470 TTTCAAAAATTGTCGTG
1 TTTCAAAAATT-TCGTG
*
66964487 TTTCAAAAATCTTCATG
1 TTTCAAAAAT-TTCGTG
*
66964504 TTTCCAAAAATTTTCGGG
1 TTT-CAAAAA-TTTCGTG
*
66964522 TTTTCAAAAATTCTTGTG
1 -TTTCAAAAATT-TCGTG
*
66964540 ATTCAAAAACTTTCGTG
1 TTTCAAAAA-TTTCGTG
66964557 TTT
1 TTT
66964560 TTTTTTTAAA
Statistics
Matches: 226, Mismatches: 32, Indels: 54
0.72 0.10 0.17
Matches are distributed among these distances:
16 12 0.05
17 97 0.43
18 83 0.37
19 27 0.12
20 7 0.03
ACGTcount: A:0.31, C:0.13, G:0.12, T:0.45
Consensus pattern (16 bp):
TTTCAAAAATTTCGTG
Found at i:66964373 original size:18 final size:18
Alignment explanation
Indices: 66964255--66964560 Score: 231
Period size: 18 Copynumber: 17.3 Consensus size: 18
66964245 AAAATCCACA
*
66964255 TGTTTTCAAAAA-TTCCG
1 TGTTTTCAAAAATTTTCG
*
66964272 ATG-TTTCAAAAATTTACG
1 -TGTTTTCAAAAATTTTCG
* *
66964290 TGTTTTC-AAAATTCTAG
1 TGTTTTCAAAAATTTTCG
*
66964307 TG-ATTCAAAAAGTTTTCG
1 TGTTTTCAAAAA-TTTTCG
*
66964325 TGTTTTCTAAAAATTTTTG
1 TGTTTTC-AAAAATTTTCG
*
66964344 TG-TTTC-AAAATTTTTG
1 TGTTTTCAAAAATTTTCG
*
66964360 TGTTTTCAAAAATTTTCA
1 TGTTTTCAAAAATTTTCG
*
66964378 TATTTTCAAAAATTTTCG
1 TGTTTTCAAAAATTTTCG
* *
66964396 TGTTTTCAACAATTCTCG
1 TGTTTTCAAAAATTTTCG
*
66964414 TG-TTTCACAAA-TTTCAG
1 TGTTTTCAAAAATTTTC-G
* *
66964431 TGTTTTAAAAAAGTTT-G
1 TGTTTTCAAAAATTTTCG
* * * ** *
66964448 CGCTTTAAAAAAAATTCT
1 TGTTTTCAAAAATTTTCG
*
66964466 TGTGTTTCAAAAATTGTCG
1 TGT-TTTCAAAAATTTTCG
* *
66964485 TG-TTTCAAAAATCTTCA
1 TGTTTTCAAAAATTTTCG
*
66964502 TGTTTCCAAAAATTTTCG
1 TGTTTTCAAAAATTTTCG
*
66964520 GGTTTTCAAAAATTCTT-G
1 TGTTTTCAAAAATT-TTCG
* *
66964538 TG-ATTCAAAAACTTTCG
1 TGTTTTCAAAAATTTTCG
66964555 TGTTTT
1 TGTTTT
66964561 TTTTTTAAAT
Statistics
Matches: 226, Mismatches: 45, Indels: 34
0.74 0.15 0.11
Matches are distributed among these distances:
16 20 0.09
17 77 0.34
18 97 0.43
19 27 0.12
20 5 0.02
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.45
Consensus pattern (18 bp):
TGTTTTCAAAAATTTTCG
Found at i:66964384 original size:53 final size:52
Alignment explanation
Indices: 66964275--66964427 Score: 182
Period size: 53 Copynumber: 2.9 Consensus size: 52
66964265 AATTCCGATG
* * * *
66964275 TTTCAAAAATTTACGTGTTTTCAAAATTCTAGTGATTCAAAAAGTTTTCGTGT
1 TTTCAAAAATTTTCGTGTTTTCAAAATTCTAGTGTTTCAAAAA-TTTTCATAT
* * *
66964328 TTTCTAAAAATTTTTGTG-TTTCAAAATTTTTGTGTTTTCAAAAATTTTCATAT
1 TTTC-AAAAATTTTCGTGTTTTCAAAATTCTAGTG-TTTCAAAAATTTTCATAT
* *
66964381 TTTCAAAAATTTTCGTGTTTTCAACAATTCTCGTGTTTCACAAATTT
1 TTTCAAAAATTTTCGTGTTTTCAA-AATTCTAGTGTTTCAAAAATTT
66964428 CAGTGTTTTA
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
52 12 0.14
53 46 0.54
54 27 0.32
ACGTcount: A:0.30, C:0.12, G:0.10, T:0.48
Consensus pattern (52 bp):
TTTCAAAAATTTTCGTGTTTTCAAAATTCTAGTGTTTCAAAAATTTTCATAT
Found at i:66964442 original size:53 final size:53
Alignment explanation
Indices: 66964279--66964512 Score: 176
Period size: 53 Copynumber: 4.4 Consensus size: 53
66964269 CCGATGTTTC
* * *
66964279 AAAAATTTACGTGTTTTCAAAATTCTAGTGATTCAAAAAGTTTTC-GTGTTTTCT
1 AAAAATTTTCGTGTTTTCAAAATTCTAGTGTTTCAAAAA-TTTTCAGTGTTTT-A
* * * * *
66964333 AAAAATTTTTGTG-TTTCAAAATTTTTGTGTTTTCAAAAATTTTCA-TATTTTC
1 AAAAATTTTCGTGTTTTCAAAATTCTAGTG-TTTCAAAAATTTTCAGTGTTTTA
* *
66964385 AAAAATTTTCGTGTTTTCAACAATTCTCGTGTTTCACAAA-TTTCAGTGTTTTA
1 AAAAATTTTCGTGTTTTCAA-AATTCTAGTGTTTCAAAAATTTTCAGTGTTTTA
* *** * * *
66964438 AAAAAGTTTGCGCT-TTAAAAAAAATTCTTGTGTTTCAAAAATTGTC-GTG-TTTC
1 AAAAA-TTTTCG-TGTT-TTCAAAATTCTAGTGTTTCAAAAATTTTCAGTGTTTTA
* * *
66964491 AAAAATCTTCATGTTTCCAAAA
1 AAAAATTTTCGTGTTTTCAAAA
66964513 ATTTTCGGGT
Statistics
Matches: 143, Mismatches: 27, Indels: 23
0.74 0.14 0.12
Matches are distributed among these distances:
51 5 0.03
52 22 0.15
53 56 0.39
54 54 0.38
55 6 0.04
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.44
Consensus pattern (53 bp):
AAAAATTTTCGTGTTTTCAAAATTCTAGTGTTTCAAAAATTTTCAGTGTTTTA
Found at i:66964442 original size:71 final size:69
Alignment explanation
Indices: 66964255--66964559 Score: 225
Period size: 71 Copynumber: 4.3 Consensus size: 69
66964245 AAAATCCACA
* **
66964255 TGTTTTCAAAAATTC-CGATGTTTCAAAAATTT-ACGTGTTTTC-AAAATTCT-AGTGATTCAAA
1 TGTTTTCAAAAATTCTCG-TGTTTC-AAAATTTCA-GTGTTTTCAAAAATTTTCA-TTTTTCAAA
66964316 AAGTTTTCG
62 AA-TTTTCG
* * **
66964325 TGTTTTCTAAAAATTTTTGTGTTTCAAAATTTTTGTGTTTTCAAAAATTTTCATATTTTCAAAAA
1 TGTTTTC-AAAAATTCTCGTGTTTCAAAATTTCAGTGTTTTCAAAAATTTTCAT-TTTTCAAAAA
66964390 TTTTCG
64 TTTTCG
* * * * ***
66964396 TGTTTTCAACAATTCTCGTGTTTCACAAATTTCAGTGTTTTAAAAAAGTTTGCGCTTTAAAAAAA
1 TGTTTTCAAAAATTCTCGTGTTTCA-AAATTTCAGTGTTTTCAAAAA-TTTTC-ATTTTTCAAAA
66964461 ATTCTT-G
63 ATT-TTCG
* * **
66964468 TG-TTTCAAAAATTGTCGTGTTTCAAAAATCTTCA-TGTTTCCAAAAATTTTCGGGTTTTCAAAA
1 TGTTTTCAAAAATTCTCGTGTTTC-AAAAT-TTCAGTGTTTTCAAAAATTTTC-ATTTTTCAAAA
66964531 ATTCTT-G
63 ATT-TTCG
*
66964538 TG-ATTCAAAAACTT-TCGTGTTT
1 TGTTTTCAAAAA-TTCTCGTGTTT
66964560 TTTTTTTAAA
Statistics
Matches: 194, Mismatches: 28, Indels: 26
0.78 0.11 0.10
Matches are distributed among these distances:
70 73 0.38
71 87 0.45
72 31 0.16
73 3 0.02
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.45
Consensus pattern (69 bp):
TGTTTTCAAAAATTCTCGTGTTTCAAAATTTCAGTGTTTTCAAAAATTTTCATTTTTCAAAAATT
TTCG
Found at i:66964461 original size:124 final size:124
Alignment explanation
Indices: 66964333--66964560 Score: 325
Period size: 124 Copynumber: 1.8 Consensus size: 124
66964323 CGTGTTTTCT
* * * * * *
66964333 AAAAATTTTTGTGTTTC-AAAATTTTTGTGTTTTCAAAAATTTTCATATTTTCAAAAATTTTCGT
1 AAAAATTCTTGTGTTTCAAAAATTGTCGTG-TTTCAAAAATCTTCATATTTCCAAAAATTTTCGG
* * *
66964397 GTTTTCAACAATTCTCGTGTTTCACAAA-TTTCAGTGTTTTAAAAAAGTTTGCGCTTTAAA
65 GTTTTCAAAAATTCTCGTGATTCAAAAACTTTC-GTGTTTTAAAAAAGTTTGCGCTTTAAA
*
66964457 AAAAATTCTTGTGTTTCAAAAATTGTCGTGTTTCAAAAATCTTCATGTTTCCAAAAATTTTCGGG
1 AAAAATTCTTGTGTTTCAAAAATTGTCGTGTTTCAAAAATCTTCATATTTCCAAAAATTTTCGGG
*
66964522 TTTTCAAAAATTCTTGTGATTCAAAAACTTTCGTGTTTT
66 TTTTCAAAAATTCTCGTGATTCAAAAACTTTCGTGTTTT
66964561 TTTTTTAAAT
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
124 77 0.85
125 14 0.15
ACGTcount: A:0.31, C:0.12, G:0.11, T:0.45
Consensus pattern (124 bp):
AAAAATTCTTGTGTTTCAAAAATTGTCGTGTTTCAAAAATCTTCATATTTCCAAAAATTTTCGGG
TTTTCAAAAATTCTCGTGATTCAAAAACTTTCGTGTTTTAAAAAAGTTTGCGCTTTAAA
Found at i:66964512 original size:35 final size:35
Alignment explanation
Indices: 66964255--66964559 Score: 246
Period size: 35 Copynumber: 8.7 Consensus size: 35
66964245 AAAATCCACA
* *
66964255 TGTTTTCAAAAA-TTCCGATGTTTCAAAAATTTACG
1 TGTTTTCAAAAATTTTCG-TGTTTCAAAAATTTTCG
* * *
66964290 TGTTTTC-AAAATTCTAGTGATTCAAAAAGTTTTCG
1 TGTTTTCAAAAATTTTCGTGTTTCAAAAA-TTTTCG
* *
66964325 TGTTTTCTAAAAATTTTTGTGTTTC-AAAATTTTTG
1 TGTTTTC-AAAAATTTTCGTGTTTCAAAAATTTTCG
* *
66964360 TGTTTTCAAAAATTTTCATATTTTCAAAAATTTTCG
1 TGTTTTCAAAAATTTTCGT-GTTTCAAAAATTTTCG
* * *
66964396 TGTTTTCAACAATTCTCGTGTTTCACAAA-TTTCAG
1 TGTTTTCAAAAATTTTCGTGTTTCAAAAATTTTC-G
* * * * ** *
66964431 TGTTTTAAAAAAGTTTGCG-CTTTAAAAAAAATTCT
1 TGTTTTCAAAAA-TTTTCGTGTTTCAAAAATTTTCG
* * *
66964466 TGTGTTTCAAAAATTGTCGTGTTTCAAAAATCTTCA
1 TGT-TTTCAAAAATTTTCGTGTTTCAAAAATTTTCG
* *
66964502 TGTTTCCAAAAATTTTCGGGTTTTCAAAAATTCTT-G
1 TGTTTTCAAAAATTTTCGTG-TTTCAAAAATT-TTCG
* *
66964538 TG-ATTCAAAAACTTTCGTGTTT
1 TGTTTTCAAAAATTTTCGTGTTT
66964560 TTTTTTTAAA
Statistics
Matches: 213, Mismatches: 44, Indels: 27
0.75 0.15 0.10
Matches are distributed among these distances:
34 31 0.15
35 97 0.46
36 70 0.33
37 15 0.07
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.45
Consensus pattern (35 bp):
TGTTTTCAAAAATTTTCGTGTTTCAAAAATTTTCG
Found at i:66973981 original size:11 final size:10
Alignment explanation
Indices: 66973959--66974014 Score: 60
Period size: 10 Copynumber: 5.3 Consensus size: 10
66973949 AGATTCAATC
*
66973959 AAAAAAATAA
1 AAAAAAAGAA
66973969 AAAAACAAG-A
1 AAAAA-AAGAA
66973979 AAAAAAAGAA
1 AAAAAAAGAA
66973989 AAAGAAGAAGAA
1 AAA-AA-AAGAA
66974001 AAGAAAAAGAA
1 AA-AAAAAGAA
66974012 AAA
1 AAA
66974015 GGAAAGGCCA
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
9 3 0.08
10 16 0.40
11 11 0.28
12 9 0.22
13 1 0.03
ACGTcount: A:0.84, C:0.02, G:0.12, T:0.02
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:66973983 original size:18 final size:17
Alignment explanation
Indices: 66973960--66974008 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 17
66973950 GATTCAATCA
66973960 AAAAAATAAAAAAACAAG
1 AAAAAA-AAAAAAACAAG
*
66973978 AAAAAAAAGAAAAAGAAG
1 AAAAAAAA-AAAAACAAG
66973996 AAGAAAAGAAAAA
1 AA-AAAA-AAAAA
66974009 GAAAAAGGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 2 0.07
18 16 0.59
19 7 0.26
20 2 0.07
ACGTcount: A:0.84, C:0.02, G:0.12, T:0.02
Consensus pattern (17 bp):
AAAAAAAAAAAAACAAG
Found at i:66973990 original size:6 final size:6
Alignment explanation
Indices: 66973981--66974015 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
66973971 AAACAAGAAA
*
66973981 AAAAAG AAAAAG AAGAAG -AAAAG AAAAAG AAAAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
66974016 GAAAGGCCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
5 4 0.15
6 22 0.85
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:66974020 original size:17 final size:16
Alignment explanation
Indices: 66973961--66974020 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 16
66973951 ATTCAATCAA
* *
66973961 AAAAATAAAAAAACAAG
1 AAAAAGAAAGAAA-AAG
66973978 AAAAA-AAAGAAAAAG
1 AAAAAGAAAGAAAAAG
*
66973993 AAGAAGAAAAGAAAAAG
1 AAAAAG-AAAGAAAAAG
66974010 AAAAAGGAAAG
1 AAAAA-GAAAG
66974021 GCCAAAGTGA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
15 7 0.19
16 6 0.16
17 23 0.62
18 1 0.03
ACGTcount: A:0.80, C:0.02, G:0.17, T:0.02
Consensus pattern (16 bp):
AAAAAGAAAGAAAAAG
Found at i:66975029 original size:24 final size:24
Alignment explanation
Indices: 66974993--66975052 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
66974983 ATGTCCCTAG
* * *
66974993 AGATTACAATGGATTGAACTTTGAA
1 AGATTACAGTGGATCGAACATT-AA
*
66975018 A-ATTACAGTGGATCGGACATTAA
1 AGATTACAGTGGATCGAACATTAA
66975041 AGATTACAGTGG
1 AGATTACAGTGG
66975053 GGGCAAGCCG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
23 3 0.10
24 26 0.87
25 1 0.03
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.28
Consensus pattern (24 bp):
AGATTACAGTGGATCGAACATTAA
Found at i:66975395 original size:45 final size:45
Alignment explanation
Indices: 66975335--66976023 Score: 890
Period size: 45 Copynumber: 15.3 Consensus size: 45
66975325 AAATAACAGA
* ** *
66975335 TCTTGTCTTTCTGTATTGGCAATGAAGTAGATCAAAGATAGCAGG
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGG
* * * *
66975380 TCTTATCTTCCTGTATTGGTAGTGAAGTAGA-CTGAAGATAGCAGA
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC-GAAGATAGCAGG
* *
66975425 TCTTGTCTTTCTGTATTGGCAGCGAAATAGATCGAAGATAGCAGG
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGG
* *
66975470 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATTGAAGATAACAGG
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGG
*
66975515 TCTTGTCTTCCTGTATTGGCAGCGAAGAAGA-CTGAAGATAGCAGG
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC-GAAGATAGCAGG
66975560 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGA-CTGAAGATAGCAGG
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC-GAAGATAGCAGG
* * * *
66975605 TCTTGTCTTCCTATATTGGCGGTGAAGTAGATCAAAGATAGCAGG
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGG
* *
66975650 TCTTGTCTTCCTATATTGGCAGCGAAGTAGA-CTGAAGATAGCAGA
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC-GAAGATAGCAGG
* * *
66975695 TCTTGTCTTCCTATATTGGCAACGAAGTAGATCGAAGATAGCATG
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGG
* * * * *
66975740 TCTTGTCTTCCTGTATTGTCAACGAAGTTGATTGAAGATAGCAGA
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGG
66975785 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGG
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGG
* * **
66975830 TCTTGTCTTCCTATATTAGCAGCG-AGTAGA-CTGAAGATAGCAAA
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC-GAAGATAGCAGG
*
66975874 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGG
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGG
* * * * * *
66975919 TTTTGTCTTTCTATATTGACAGCAAAGTAGA-CTAAAGATAGCAGG
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC-GAAGATAGCAGG
* * *
66975964 TCTTGTCTTCTTGTATTGGCAGCGAAGTAGA-CTGAAGATAACAGA
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC-GAAGATAGCAGG
66976009 TCTTGTCTTCCTGTA
1 TCTTGTCTTCCTGTA
66976024 CTGCAGTGAA
Statistics
Matches: 568, Mismatches: 66, Indels: 20
0.87 0.10 0.03
Matches are distributed among these distances:
43 1 0.00
44 41 0.07
45 522 0.92
46 4 0.01
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (45 bp):
TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGG
Found at i:66975484 original size:90 final size:90
Alignment explanation
Indices: 66975331--66976023 Score: 987
Period size: 90 Copynumber: 7.7 Consensus size: 90
66975321 GAGAAAATAA
* ** * *
66975331 CAGATCTTGTCTTTCTGTATTGGCAATGAAGTAGATCAAAGATAGCAGGTCTTATCTTCCTGTAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGGTCTTGTCTTCCTGTAT
* *
66975396 TGGTAGTGAAGTAGACTGAAGATAG
66 TGGCAGCGAAGTAGACTGAAGATAG
* *
66975421 CAGATCTTGTCTTTCTGTATTGGCAGCGAAATAGATCGAAGATAGCAGGTCTTGTCTTCCTGTAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGGTCTTGTCTTCCTGTAT
* *
66975486 TGGCAGCGAAGTAGATTGAAGATAA
66 TGGCAGCGAAGTAGACTGAAGATAG
* *
66975511 CAGGTCTTGTCTTCCTGTATTGGCAGCGAAGAAGA-CTGAAGATAGCAGGTCTTGTCTTCCTGTA
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC-GAAGATAGCAGGTCTTGTCTTCCTGTA
66975575 TTGGCAGCGAAGTAGACTGAAGATAG
65 TTGGCAGCGAAGTAGACTGAAGATAG
* * * * * *
66975601 CAGGTCTTGTCTTCCTATATTGGCGGTGAAGTAGATCAAAGATAGCAGGTCTTGTCTTCCTATAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGGTCTTGTCTTCCTGTAT
66975666 TGGCAGCGAAGTAGACTGAAGATAG
66 TGGCAGCGAAGTAGACTGAAGATAG
* * *
66975691 CAGATCTTGTCTTCCTATATTGGCAACGAAGTAGATCGAAGATAGCATGTCTTGTCTTCCTGTAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGGTCTTGTCTTCCTGTAT
* * * *
66975756 TGTCAACGAAGTTGATTGAAGATAG
66 TGGCAGCGAAGTAGACTGAAGATAG
*
66975781 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGGTCTTGTCTTCCTATAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGGTCTTGTCTTCCTGTAT
*
66975846 TAGCAGCG-AGTAGACTGAAGATAG
66 TGGCAGCGAAGTAGACTGAAGATAG
* * * * *
66975870 CAAATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGGTTTTGTCTTTCTATAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGGTCTTGTCTTCCTGTAT
* * *
66975935 TGACAGCAAAGTAGACTAAAGATAG
66 TGGCAGCGAAGTAGACTGAAGATAG
* * * *
66975960 CAGGTCTTGTCTTCTTGTATTGGCAGCGAAGTAGA-CTGAAGATAACAGATCTTGTCTTCCTGTA
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC-GAAGATAGCAGGTCTTGTCTTCCTGTA
66976024 CTGCAGTGAA
Statistics
Matches: 541, Mismatches: 58, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
89 82 0.15
90 458 0.85
91 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (90 bp):
CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGGTCTTGTCTTCCTGTAT
TGGCAGCGAAGTAGACTGAAGATAG
Found at i:66976230 original size:44 final size:41
Alignment explanation
Indices: 66976139--66976304 Score: 154
Period size: 44 Copynumber: 3.8 Consensus size: 41
66976129 ATATCAAACA
* *
66976139 TTATC-CCCTTGAAGTTGCAGTGGAGCAGGTTGAAATTGCAAACC
1 TTATCTCCC-TGAAGTTGCAGTGGAGCAGATT-AAA--GCAAATC
* * *
66976183 TTATCTCGCTGAAGTTGCAGTGGAGTAGGTTAAAGACACCAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CA--AATC
** *
66976227 TTATCTCCCTGAAGTTGCAGCAGAGCAGATTGAAGCTATTAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC-A--AATC
*
66976271 CTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
66976305 ACAATGAATG
Statistics
Matches: 102, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 4 0.04
44 93 0.91
45 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (41 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAAATC
Found at i:66976253 original size:88 final size:86
Alignment explanation
Indices: 66976139--66976304 Score: 201
Period size: 88 Copynumber: 1.9 Consensus size: 86
66976129 ATATCAAACA
** * *
66976139 TTATCCCCTTGAAGTTGCAGTGGAGCAGGTTGAA-ATTGCAAACCTTATCTCGCTGAAGTTGCAG
1 TTATCCCCTTGAAGTTGCAGCAGAGCAGATTGAACATT--AAACC-TATCTCCCTGAAGTTGCAG
* *
66976203 TGGAGTAGGTTAAAGACACCAATC
63 TGGAGCAGATTAAAGACACCAATC
*
66976227 TTATCTCCC-TGAAGTTGCAGCAGAGCAGATTGAAGCTATTAATCCTATCTCCCTGAAGTTGCAG
1 TTATC-CCCTTGAAGTTGCAGCAGAGCAGATTGAA-C-ATTAAACCTATCTCCCTGAAGTTGCAG
66976291 TGGAGCAGATTAAA
63 TGGAGCAGATTAAA
66976305 ACAATGAATG
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
88 57 0.85
89 7 0.10
91 3 0.04
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (86 bp):
TTATCCCCTTGAAGTTGCAGCAGAGCAGATTGAACATTAAACCTATCTCCCTGAAGTTGCAGTGG
AGCAGATTAAAGACACCAATC
Found at i:66976547 original size:44 final size:44
Alignment explanation
Indices: 66976496--66976579 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
66976486 CAGATCATAT
**
66976496 CAAACCTTATCCCCCTT-AAGTTGCAGTGGGGCAGGTTGAAATTG
1 CAAACCTTAT-CCCCTTGAAGTTGCAGTGGAACAGGTTGAAATTG
*
66976540 CAAACCTTATCTCCTTGAAGTTGCAGTGGAACAGGTTGAA
1 CAAACCTTATCCCCTTGAAGTTGCAGTGGAACAGGTTGAA
66976580 GATACAAGTC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 5 0.14
44 31 0.86
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (44 bp):
CAAACCTTATCCCCTTGAAGTTGCAGTGGAACAGGTTGAAATTG
Found at i:66976593 original size:44 final size:44
Alignment explanation
Indices: 66976496--66976606 Score: 120
Period size: 44 Copynumber: 2.5 Consensus size: 44
66976486 CAGATCATAT
* ** *
66976496 CAAACCTTATCCCCCTT-AAGTTGCAGTGGGGCAGGTTGAAATTG
1 CAAACCTTAT-CTCCTTGAAGTTGCAGTGGAACAGGTTGAAATTA
66976540 CAAACCTTATCTCCTTGAAGTTGCAGTGGAACAGGTTGAAGA-TA
1 CAAACCTTATCTCCTTGAAGTTGCAGTGGAACAGGTTGAA-ATTA
**
66976584 CAAGTCTTATCT-CTCTGAAGTTG
1 CAAACCTTATCTCCT-TGAAGTTG
66976607 TAGAGTAGTA
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
43 7 0.12
44 50 0.86
45 1 0.02
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.30
Consensus pattern (44 bp):
CAAACCTTATCTCCTTGAAGTTGCAGTGGAACAGGTTGAAATTA
Found at i:66976710 original size:43 final size:43
Alignment explanation
Indices: 66976655--66976761 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 43
66976645 AAGTTGCTGC
*
66976655 GAAGAAGATTGAAGCTACAAGTCAG-ATCT-TTCTGAAGTGCAGT
1 GAAGTAGATTGAAGCTACAAG-CAGTATCTCTT-TGAAGTGCAGT
* * * *
66976698 GAAGTGGATTGAAGCTAAAAGCCGTATCTCTTTGATGTGCAGT
1 GAAGTAGATTGAAGCTACAAGCAGTATCTCTTTGAAGTGCAGT
* *
66976741 GGAGTAGATTGAAGCAACAAG
1 GAAGTAGATTGAAGCTACAAG
66976762 ACACATTGGA
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
42 2 0.04
43 49 0.92
44 2 0.04
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (43 bp):
GAAGTAGATTGAAGCTACAAGCAGTATCTCTTTGAAGTGCAGT
Found at i:66982901 original size:69 final size:69
Alignment explanation
Indices: 66982803--66982998 Score: 239
Period size: 69 Copynumber: 2.8 Consensus size: 69
66982793 TATTCTTTAT
* * * * * *
66982803 TTTTAAAATACCTAAATTTAATACTATTTATATCTGTTTTATTTATTTATTTGTTCATTATTCTT
1 TTTT-AAATACTTAAATTTAATATTATTTATATTTGTTTTATCTATTTATTTATTCATCATTCTT
**
66982868 TTGCC
65 TTAAC
* * * *
66982873 TTTTAAATATTTAAATTTAATATTATTTATATTTGTTTTACCGATTTATTTATTTATCATTCTTT
1 TTTTAAATACTTAAATTTAATATTATTTATATTTGTTTTATCTATTTATTTATTCATCATTCTTT
*
66982938 TAAT
66 TAAC
* * *
66982942 TTTTAAATACTTAAATTTAATATTACTTATATTTGTCTTATCTATTTATTTAGTCAT
1 TTTTAAATACTTAAATTTAATATTATTTATATTTGTTTTATCTATTTATTTATTCAT
66982999 TTATTCGTTA
Statistics
Matches: 106, Mismatches: 20, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
69 102 0.96
70 4 0.04
ACGTcount: A:0.30, C:0.09, G:0.04, T:0.58
Consensus pattern (69 bp):
TTTTAAATACTTAAATTTAATATTATTTATATTTGTTTTATCTATTTATTTATTCATCATTCTTT
TAAC
Found at i:66992095 original size:3 final size:3
Alignment explanation
Indices: 66992087--66992118 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
66992077 AATAAATAGG
*
66992087 TAA TAA TAA TAG TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
66992119 GGACTAATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:66992103 original size:12 final size:12
Alignment explanation
Indices: 66992081--66992118 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
66992071 AATATAAATA
66992081 AATAGGTAATAAT
1 AATA-GTAATAAT
66992094 AATAGTAATAAT
1 AATAGTAATAAT
*
66992106 AATAATAATAAT
1 AATAGTAATAAT
66992118 A
1 A
66992119 GGACTAATTC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 20 0.83
13 4 0.17
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.32
Consensus pattern (12 bp):
AATAGTAATAAT
Found at i:67002868 original size:20 final size:19
Alignment explanation
Indices: 67002840--67002877 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
67002830 GAACAATTCC
67002840 TTTTTATTTCTTT-TATTTA
1 TTTTTATTT-TTTATATTTA
67002859 TTTTTAATTTTTTATATTT
1 TTTTT-ATTTTTTATATTT
67002878 TAAACAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTTATTTTTTATATTTA
Found at i:67010076 original size:14 final size:14
Alignment explanation
Indices: 67010057--67010086 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
67010047 ATCCAAACAT
67010057 TAACAACAAAATAG
1 TAACAACAAAATAG
*
67010071 TAACAACATAATAG
1 TAACAACAAAATAG
67010085 TA
1 TA
67010087 GAATGATAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.60, C:0.13, G:0.07, T:0.20
Consensus pattern (14 bp):
TAACAACAAAATAG
Found at i:67025570 original size:21 final size:18
Alignment explanation
Indices: 67025536--67025585 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 18
67025526 GGTTAAGAAG
67025536 TAATTTTATTTTAACATTTTGT
1 TAATTTT-TTTT-A-ATTTT-T
67025558 TAATTTTTTTTAATTTTT
1 TAATTTTTTTTAATTTTT
67025576 TAATTATTTT
1 TAATT-TTTT
67025586 AAAATAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
18 6 0.22
19 9 0.33
20 1 0.04
21 4 0.15
22 7 0.26
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (18 bp):
TAATTTTTTTTAATTTTT
Found at i:67027791 original size:11 final size:11
Alignment explanation
Indices: 67027775--67027809 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
67027765 CCCTTCCCCC
67027775 CTCCCTTCTCT
1 CTCCCTTCTCT
67027786 CTCCCTTCTCT
1 CTCCCTTCTCT
67027797 CTTCCC-TCTCT
1 C-TCCCTTCTCT
67027808 CT
1 CT
67027810 TCTTTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:67028303 original size:3 final size:3
Alignment explanation
Indices: 67028279--67028349 Score: 63
Period size: 3 Copynumber: 23.3 Consensus size: 3
67028269 AATATCCTTG
* * * *
67028279 TTA TTT TTA -TA TTA TTA GTA TTA TTA GTA TTA CTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
67028326 TGTA TTA GTA TATA TTT TTA TTA T
1 T-TA TTA TTA T-TA TTA TTA TTA T
67028350 GTACGTGTAT
Statistics
Matches: 53, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
2 2 0.04
3 45 0.85
4 6 0.11
ACGTcount: A:0.31, C:0.01, G:0.06, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:67028346 original size:23 final size:22
Alignment explanation
Indices: 67028291--67028352 Score: 81
Period size: 23 Copynumber: 2.8 Consensus size: 22
67028281 ATTTTTATAT
*
67028291 TATTAGTATTATTA-GTATTAC
1 TATTATTATTATTATGTATTAC
*
67028312 TATTATTATTATTATGTATTAG
1 TATTATTATTATTATGTATTAC
*
67028334 TATATATTTTTATTATGTA
1 TAT-TATTATTATTATGTA
67028353 CGTGTATACA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 13 0.36
22 9 0.25
23 14 0.39
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (22 bp):
TATTATTATTATTATGTATTAC
Found at i:67028359 original size:23 final size:23
Alignment explanation
Indices: 67028286--67028360 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 23
67028276 TTGTTATTTT
* *
67028286 TATATTATTAGTATTAT-TAGTAT
1 TATA-TATTATTATTATGTAGTAG
*
67028309 TACTATTATTATTATTATGTATTAG
1 TA-TA-TATTATTATTATGTAGTAG
*
67028334 TATATATTTTTATTATGTACGT-G
1 TATATATTATTATTATGTA-GTAG
67028357 TATA
1 TATA
67028361 CACATATATA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
23 21 0.48
24 17 0.39
25 6 0.14
ACGTcount: A:0.32, C:0.03, G:0.09, T:0.56
Consensus pattern (23 bp):
TATATATTATTATTATGTAGTAG
Done.