Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 225 of 240
Found at i:67674443 original size:19 final size:18
Alignment explanation
Indices: 67674405--67674454 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
67674395 TAAAACCCCT
67674405 TTTTTATAAATAAATATA
1 TTTTTATAAATAAATATA
*
67674423 TTTTTATCAAT-AAT-TA
1 TTTTTATAAATAAATATA
67674439 TTATTTA-AAA-AAATAT
1 TT-TTTATAAATAAATAT
67674455 TAGTTCAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
16 9 0.33
17 8 0.30
18 10 0.37
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (18 bp):
TTTTTATAAATAAATATA
Found at i:67681748 original size:17 final size:17
Alignment explanation
Indices: 67681723--67681756 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
67681713 TTGAATGAGA
* *
67681723 TTATCTTTTTGTTAAAT
1 TTATATTTTGGTTAAAT
67681740 TTATATTTTGGTTAAAT
1 TTATATTTTGGTTAAAT
67681757 CAAATCAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.26, C:0.03, G:0.09, T:0.62
Consensus pattern (17 bp):
TTATATTTTGGTTAAAT
Found at i:67688071 original size:17 final size:18
Alignment explanation
Indices: 67688046--67688080 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
67688036 GACTTTTTAT
*
67688046 AATTTATAA-AATAAAAA
1 AATTAATAATAATAAAAA
67688063 AATTAATAATAATAAAAA
1 AATTAATAATAATAAAAA
67688081 TGCACTTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
AATTAATAATAATAAAAA
Found at i:67692858 original size:69 final size:68
Alignment explanation
Indices: 67692539--67692915 Score: 312
Period size: 69 Copynumber: 5.5 Consensus size: 68
67692529 TCGTTTTCTT
* * * * * *
67692539 CAAGAAAAAGAGC-CGCCTGTTGCTGGACATGAAGAACCGTCTGAAATGCTAAATAAACGATCTC
1 CAAGAAAATGAGCTC-CATGTTGCTGGACATGAAGAACCATCGGAAATGCTAGATAAACGA-GTC
*
67692603 TACTC
64 GACTC
* * * ** * * * * *
67692608 CAAGAAAAAGAGC-CACCTGTCGCTGGACACAAAGAACCGTCAGAAATGCTAGATCAACTACCTC
1 CAAGAAAATGAGCTC-CATGTTGCTGGACATGAAGAACCATCGGAAATGCTAGATAAACGA-GTC
** *
67692672 TCCTG
64 GACTC
* * * * *
67692677 CAAGGAAAA-GAGC-CACATGTTCCTGGAGATGAAGAACCGTCGGAAATGCTAGATGAACAAGGT
1 CAA-GAAAATGAGCTC-CATGTTGCTGGACATGAAGAACCATCGGAAATGCTAGATAAACGA-GT
**
67692740 CGAAAC
63 CGACTC
* * *
67692746 AAAGAAAATGAGCTCCATGTTGCCGGACATGAAGAACCATCGGAAGTGCTAGATAAACGACGTCG
1 CAAGAAAATGAGCTCCATGTTGCTGGACATGAAGAACCATCGGAAATGCTAGATAAACGA-GTCG
67692811 ACTC
65 ACTC
* * * * * *
67692815 CAAGAAAATGAGCTCCATGTTGATGGACATGAAGAGCCCTCGGAAATACTAGATCAACAGAGTCA
1 CAAGAAAATGAGCTCCATGTTGCTGGACATGAAGAACCATCGGAAATGCTAGATAAAC-GAGTCG
67692880 ACTC
65 ACTC
*
67692884 CAAGAAAATGAGCTCCATGTTGCTGGAAATGA
1 CAAGAAAATGAGCTCCATGTTGCTGGACATGA
67692916 GCTAGATAAA
Statistics
Matches: 255, Mismatches: 49, Indels: 8
0.82 0.16 0.03
Matches are distributed among these distances:
68 5 0.02
69 242 0.95
70 8 0.03
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (68 bp):
CAAGAAAATGAGCTCCATGTTGCTGGACATGAAGAACCATCGGAAATGCTAGATAAACGAGTCGA
CTC
Found at i:67692981 original size:123 final size:123
Alignment explanation
Indices: 67692793--67693038 Score: 323
Period size: 123 Copynumber: 2.0 Consensus size: 123
67692783 CATCGGAAGT
* ** * * *
67692793 GCTAGATAAACGACGTCGACTCCAAGAAAATGAGCTCCATGTTGATGGACATGAAGAGCCCTCGG
1 GCTAGATAAACGAAGTCGACTCCAAGAAAACAAACTCCATGTTGACGGACATGAAGAGCCATCGG
* * *
67692858 AAATACTAGATCAACAGA-GTCAACTCCAAGAAAATGAGCTCCATGTTGCTGGAAATGA
66 AAATACTAGATAAAC-GACGTCAACTCCAAGAAAATGAGCTCCAAGTTGATGGAAATGA
* ** *
67692916 GCTAGATAAACGAAGTCGACTCCAAGAAAACAAACTCCGTGTTTCCGGGCATGAAGAGCCATCGG
1 GCTAGATAAACGAAGTCGACTCCAAGAAAACAAACTCCATGTTGACGGACATGAAGAGCCATCGG
* * * *
67692981 AAATGCTAGATAAACGACGTCGACTCCTAGAAAATGAGCTCCAAGTTGATGGACATGA
66 AAATACTAGATAAACGACGTCAACTCCAAGAAAATGAGCTCCAAGTTGATGGAAATGA
67693039 ACAGCCCGTA
Statistics
Matches: 105, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
122 2 0.02
123 103 0.98
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (123 bp):
GCTAGATAAACGAAGTCGACTCCAAGAAAACAAACTCCATGTTGACGGACATGAAGAGCCATCGG
AAATACTAGATAAACGACGTCAACTCCAAGAAAATGAGCTCCAAGTTGATGGAAATGA
Found at i:67693038 original size:69 final size:66
Alignment explanation
Indices: 67692965--67693206 Score: 219
Period size: 69 Copynumber: 3.7 Consensus size: 66
67692955 TGTTTCCGGG
* *
67692965 CATGAAGAGCCATCGGAAATGCTAGATAAACGACGTCGACTCCTAGAAAATGAGCTCCAAGTTGA
1 CATGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCC-AGAAAA-GA-CTCCAAGTTGA
67693030 TGGA
63 TGGA
* * * * * * **
67693034 CATGAACAGCCCGT-AGAAATGCTAGATAAATGGCATCGACTCC----AAGA--CCATGTCAATG
1 CATGAAGAGCCC-TCGGAAATGCTAGATAAAAGACGTCGACTCCAGAAAAGACTCCAAGTTGATG
67693092 GA
65 GA
* * * *
67693094 CATGAAGAGCCCTCGAAAATGCTAAATAAAAGAGGACGACTCCAAGATAAAGAACTCCAAGTTGA
1 CATGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCC-AGA-AAAG-ACTCCAAGTTGA
67693159 TGGA
63 TGGA
** *
67693163 CACCAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCA
1 CATGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCA
67693207 AGATGGACAT
Statistics
Matches: 134, Mismatches: 28, Indels: 23
0.72 0.15 0.12
Matches are distributed among these distances:
59 1 0.01
60 42 0.31
63 2 0.01
64 2 0.01
66 3 0.02
67 1 0.01
68 1 0.01
69 81 0.60
70 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.17
Consensus pattern (66 bp):
CATGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAGAAAAGACTCCAAGTTGATGG
A
Found at i:67693123 original size:60 final size:61
Alignment explanation
Indices: 67693028--67695318 Score: 836
Period size: 69 Copynumber: 35.9 Consensus size: 61
67693018 GCTCCAAGTT
* * *
67693028 GATGGACATGAACAG-CC-CGTAGAAATGCTAGATAAATGGCATCGACTCCAAGACCATGTC
1 GATGGACATGAAGAGCCCTCG-AGAAATGCTAGATAAAAGGCGTCGACTCCAAGACCATGTC
* * *
67693088 AATGGACATGAAGAGCCCTCGA-AAATGCTAAATAAAAGAG-GACGACTCCAAGATAAAGAACTC
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAG-GCGTCGACTCC------AAG-A--C
* *
67693151 CAAGTT
56 CATGTC
** *
67693157 GATGGACACCAAGAGCCCTC-AGAAATGCTAGATAAAAGACGTCGACTCC---A--A----
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCCAAGACCATGTC
* * * ** * *
67693208 GATGGACATGAAGAACCCT-TAGAAATGCTAGATAAACGGCACCGACTCCAAGAACATATC
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCCAAGACCATGTC
* * *
67693268 GATGGACACGAAGAGCCC-CCAGAAATGCTAGATAAAAGACGTCGACTCCTAGAAAATGAGCTCC
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCC-----AA-GA---CC
* *
67693332 AAGTT
57 ATGTC
* *
67693337 GATGGACATGAAGAGCCCTC-AAAAATGCTAGATAAACA-GCGTCGACTCCAAGAACATGTC
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAA-AGGCGTCGACTCCAAGACCATGTC
* * *
67693397 AATGGACACGAAGAGCCC-CCAGAAATGCTAGATAAAAGGCGTCGACTCCAAGAGAAAGAACTCC
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCC------AAG-A--CC
* *
67693461 AAGTT
57 ATGTC
* * * * *
67693466 GATGGACATGAAGAGCCCTC-AGAAATGCTAGATAAACGACGTCGACTCAAAGAACATATC
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCCAAGACCATGTC
* * *
67693526 GATGGACAGGAAGAGCCCTCGA-AAATGCTAGATAAAAGACGTCAACTCCAACAGAAAGAACTCC
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACT-C--C---AAG-A--CC
* *
67693590 AAGTT
57 ATGTC
* * * * *
67693595 GATGGACATGAAGAGCCCTC-AGAAATGCTAGATAAACGGCGTCGACTCAAAGAACATATA
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCCAAGACCATGTC
** * * * *
67693655 GATGGACACAAAGA-ACCTTGGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCC
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCC------AAG-A--CC
* *
67693719 AAGTT
57 ATGTC
* * * *
67693724 GATGGACATGAAGAGCCCTC-AGAAATGCTAGATAAACGGCGTCGACTCAAAGAACATATC
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCCAAGACCATGTC
* * * * *
67693784 GATGGATACGAAGATCCCTCG-GAAATGCTAGATAAACGACGTCGACTCCAAGAAAATAAGCTCC
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCCAAG------A---CC
*
67693848 ATGTT
57 ATGTC
* * * ** *
67693853 GATGGACATGAAGAGCCCTC-AGAAATACTAGATCAACA-GCGTCAACTCCAAGAAAATG-A
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGAT-AAAAGGCGTCGACTCCAAGACCATGTC
* * ** * * **
67693912 GCT--CCATG--TTG--CT-G-GAAATGAGCTAGATGAACGAAGTCGACTCCAAGAAAACAAACT
1 GATGGACATGAAGAGCCCTCGAGAAAT--GCTAGATAAAAGGCGTCGACTCCAAG-------A--
*
67693969 CCATGTT
55 CCATGTC
*** * * * *
67693976 TCCGGACATGAAGAGCCATCG-GAAATGCTAGATAAACGACGTCGACTCCTAGAAAATAAGCTCC
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCC--------AAG-ACC
* *
67694040 AAGTT
57 ATGTC
* * * * * * * *
67694045 GATCGACATGAACAGCCCT-TAGAAATGTTAGATAAACGGCATCGACTCCAAGATCATGTT
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCCAAGACCATGTC
** *
67694105 GATGGACACAAAGAGCCCTC-AGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCC
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCC------AAG-A--CC
* *
67694169 AAGTT
57 ATGTC
*
67694174 GATGGACATGAAGAGCCCTCG-GAAATGCTAGATAAAAGACGTCGACTCCTAGAAAATGAGCTCC
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCC-----AA-GA---CC
* *
67694238 AAGTT
57 ATGTC
* * * * * *
67694243 GATGGACATGAAGAGCCCTC-AAAAATGCTAGATAAACA-GTGTCGACTCAAAGAACATATT
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAA-AGGCGTCGACTCCAAGACCATGTC
** * *
67694303 GATGGACACAAAGAGCCCTCGA-AAATGCTAGATAAAAGACGTCTACTCCAAGAGAAAGAACTCC
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCC------AAG-A--CC
* *
67694367 AAGTT
57 ATGTC
* * * * *
67694372 GATGGACATGAACAGCCCTC-AGAAATGCTAGATAAACGGCGTCGACTCAAAGAACATATC
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCCAAGACCATGTC
* * * *
67694432 GATGGACATGAAAAGTCCTCG-GAAATGCTAGATAAAAGACGTCAACTCCTAGAAAATGAGCTCC
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCC-----AA-GA---CC
* *
67694496 AAGTT
57 ATGTC
* * * * * *
67694501 GATGGACATAAAGAGCCCT-TAGAAATGCTAGATAAACA-ACGTCAACTCAAAGAACATGTC
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAA-AGGCGTCGACTCCAAGACCATGTC
* ** * *
67694561 GATAGACACAAACAGCCCTCGA-AAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCC
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCC------AAG-A--CC
* *
67694625 AAGTT
57 ATGTC
* * * *
67694630 GATGGACATGAAGAGCCCTC-AGAAATGCTAGATAAACGGCGTCGACTCAAAGAACATATC
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCCAAGACCATGTC
* * * **
67694690 GATGGACATCAAGAGCCCTC-AGGAATGCTAGATAAACGATGTCGACTCCAAGAGAAAGAACTCC
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCC------AAG-A--CC
* *
67694754 AAGTT
57 ATGTC
* * * * * * *
67694759 GATGGACATGAAGAGCCCTC-AGAAATGCTAGATAAACGACATCAACTCAAAGAACATATC
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCCAAGACCATGTC
* * * *
67694819 GATGGACACGAAGAG-CCTTG-GCAAATGCTAGATAAAAGACGTCAACTCCAAGAGAAAAAACTC
1 GATGGACATGAAGAGCCCTCGAG-AAATGCTAGATAAAAGGCGTCGACTCC-A-AG-----A--C
* *
67694882 CAAGTT
56 CATGTC
* * * * * *
67694888 GATGGACATGAAGAACCCTC-AGAAATGCTAGATAAACGACGTCGACTCAAAGAACATATC
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCCAAGACCATGTC
* * * * * **
67694948 GATGGACACGAAGGGCTCTC-AAAAAAGCTAGATAAAATACGTCGACTCCAAGAGAAAGAACTCC
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCC------AAG-A--CC
* *
67695012 AAGTT
57 ATGTC
* * * * *
67695017 GATGGACATGAAGAGCCCTC-AGAAATGCTAGATAAACGGCGTCGACTCAAAGAACATATT
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCCAAGACCATGTC
* * * * * ** *
67695077 GATGGACACGAAGAGCCCTTG-GAAATGCTAGATAAAAGGCGTCAACTCGAGGAAAATGTT
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCCAAGACCATGTC
* * * *
67695137 GATGGACA-CAGAGAGCCCTC-AAAAATGCTAGATAAAAGACATCGACTCCAAGAAAATGAGCTC
1 GATGGACATGA-AGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCC-----AA-GA---C
*
67695200 CATGTT
56 CATGTC
* * **
67695206 GATGGACATGAAGAGCCCTCG-GAAATGCTAGATAAACGACGTCGACTCCAAGAAAATGTTC
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCCAAGACCATG-TC
* * * *
67695267 -ATGGACACGAAGAGCCCTCG-GAAATGCTAGATAAAAGACTTAGACTCCAAGA
1 GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCCAAGA
67695319 AATTGAGCTC
Statistics
Matches: 1698, Mismatches: 324, Indels: 418
0.70 0.13 0.17
Matches are distributed among these distances:
51 41 0.02
52 5 0.00
53 3 0.00
54 18 0.01
55 2 0.00
56 1 0.00
57 4 0.00
59 15 0.01
60 710 0.42
61 14 0.01
62 12 0.01
63 33 0.02
64 9 0.01
65 5 0.00
66 38 0.02
67 12 0.01
68 11 0.01
69 740 0.44
70 16 0.01
71 6 0.00
77 3 0.00
ACGTcount: A:0.40, C:0.21, G:0.22, T:0.17
Consensus pattern (61 bp):
GATGGACATGAAGAGCCCTCGAGAAATGCTAGATAAAAGGCGTCGACTCCAAGACCATGTC
Found at i:67693202 original size:129 final size:129
Alignment explanation
Indices: 67692965--67693209 Score: 332
Period size: 129 Copynumber: 1.9 Consensus size: 129
67692955 TGTTTCCGGG
* * * * * *
67692965 CATGAAGAGCCATCGGAAATGCTAGATAAACGACGTCGACTCCTAGAAAATGAGCTCCAAGTTGA
1 CATGAAGAGCCATCGAAAATGCTAAATAAAAGACGACGACTCCAAGAAAATGAACTCCAAGTTGA
** * *
67693030 TGGACATGAACAGCCCGTAGAAATGCTAGATAAATGGCATCGACTCCAAGACCATGTCAATGGA
66 TGGACACCAACAGCCCGTAGAAATGCTAGATAAAAGACATCGACTCCAAGACCATGTCAATGGA
* *
67693094 CATGAAGAGCCCTCGAAAATGCTAAATAAAAGAGGACGACTCCAAGATAAA-GAACTCCAAGTTG
1 CATGAAGAGCCATCGAAAATGCTAAATAAAAGACGACGACTCCAAGA-AAATGAACTCCAAGTTG
* *
67693158 ATGGACACCAAGAGCCC-TCAGAAATGCTAGATAAAAGACGTCGACTCCAAGA
65 ATGGACACCAACAGCCCGT-AGAAATGCTAGATAAAAGACATCGACTCCAAGA
67693210 TGGACATGAA
Statistics
Matches: 100, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
128 1 0.01
129 96 0.96
130 3 0.03
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.17
Consensus pattern (129 bp):
CATGAAGAGCCATCGAAAATGCTAAATAAAAGACGACGACTCCAAGAAAATGAACTCCAAGTTGA
TGGACACCAACAGCCCGTAGAAATGCTAGATAAAAGACATCGACTCCAAGACCATGTCAATGGA
Found at i:67693215 original size:51 final size:53
Alignment explanation
Indices: 67693157--67693316 Score: 162
Period size: 51 Copynumber: 2.9 Consensus size: 53
67693147 ACTCCAAGTT
*
67693157 GATGGACACCAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCA-A-
1 GATGGACACGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCATAC
* * * * * **
67693208 GATGGACATGAAGAACCCTTAGAAATGCTAGATAAACGGCACCGACTCCAAGAACATATC
1 GATGGACACGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACT-C-----CATA-C
*
67693268 GATGGACACGAAGAGCCCCCAGAAATGCTAGATAAAAGACGTCGACTCC
1 GATGGACACGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCC
67693317 TAGAAAATGA
Statistics
Matches: 84, Mismatches: 16, Indels: 15
0.73 0.14 0.13
Matches are distributed among these distances:
51 39 0.46
52 1 0.01
54 1 0.01
57 2 0.02
58 1 0.01
59 1 0.01
60 39 0.46
ACGTcount: A:0.39, C:0.25, G:0.22, T:0.14
Consensus pattern (53 bp):
GATGGACACGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCATAC
Found at i:67693440 original size:129 final size:129
Alignment explanation
Indices: 67693208--67695258 Score: 2305
Period size: 129 Copynumber: 15.9 Consensus size: 129
67693198 TCGACTCCAA
* * * ** *
67693208 GATGGACATGAAGAACCCTTAGAAATGCTAGATAAACGGCACCGACTCCAAGAACATATCGATGG
1 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACAGCGTCGACTCAAAGAACATATCGATGG
* * * *
67693273 ACACGAAGAGCCCCCAGAAATGCTAGATAAAAGACGTCGACTCCTAGA-AAATGAGCTCCAAGTT
66 ACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAA-GAACTCCAAGTT
* * * *
67693337 GATGGACATGAAGAGCCCTCAAAAATGCTAGATAAACAGCGTCGACTCCAAGAACATGTCAATGG
1 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACAGCGTCGACTCAAAGAACATATCGATGG
* * *
67693402 ACACGAAGAGCCCCCAGAAATGCTAGATAAAAGGCGTCGACTCCAAGAGAAAGAACTCCAAGTT
66 ACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGTT
67693466 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAAC-GACGTCGACTCAAAGAACATATCGATG
1 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACAG-CGTCGACTCAAAGAACATATCGATG
* * * *
67693530 GACAGGAAGAGCCCTCGAAAATGCTAGATAAAAGACGTCAACTCCAACAGAAAGAACTCCAAGTT
65 GACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGTT
* *
67693595 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACGGCGTCGACTCAAAGAACATATAGATGG
1 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACAGCGTCGACTCAAAGAACATATCGATGG
* * * *
67693660 ACACAAAGAACCTTGGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGTT
66 ACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGTT
*
67693724 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACGGCGTCGACTCAAAGAACATATCGATGG
1 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACAGCGTCGACTCAAAGAACATATCGATGG
* * * * *
67693789 ATACGAAGATCCCTCGGAAATGCTAGATAAACGACGTCGACTCCAAGA-AAATAAGCTCCATGTT
66 ACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAA-CTCCAAGTT
* * * *
67693853 GATGGACATGAAGAGCCCTCAGAAATACTAGATCAACAGCGTCAACTCCAAGAA-A-AT-GA--G
1 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACAGCGTCGACTCAAAGAACATATCGATGG
* * * * * * * * *
67693913 -CTCCATGTTG--CT-GGAAATGAGCTAGATGAACGAAGTCGACTCCAAGA-AAACAAACTCCAT
66 ACACGAAG-AGCCCTCGGAAAT--GCTAGATAAAAGACGTCGACTCCAAGAGAAA-GAACTCCAA
67693973 GTT
127 GTT
*** * * ** *
67693976 TCCGGACATGAAGAGCCATCGGAAATGCTAGATAAAC-GACGTCGACTCCTAGAAAATAAGCTCC
1 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACAG-CGTCGACTCAAAGAACAT-A--T-C
* * * ** * * * *
67694040 AAGTTGATCGACATGAACAGCCCTTAGAAATGTTAGATAAACGGCATCGACTCC------AAG-A
61 -----GATGGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAA
*
67694098 -T-CATGTT
121 CTCCAAGTT
** *
67694105 GATGGACACAAAGAGCCCTCAGAAATGCTAGATAAA-AGACGTCGACTCCAAGAGAAAGAACTCC
1 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACAG-CGTCGACT-CAA-AG-AA-CA-T--
* * *
67694169 AAGTTGATGGACATGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCTAGA-AAATGA
58 -A-TCGATGGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAA-GA
*
67694233 GCTCCAAGTT
120 ACTCCAAGTT
* * *
67694243 GATGGACATGAAGAGCCCTCAAAAATGCTAGATAAACAGTGTCGACTCAAAGAACATATTGATGG
1 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACAGCGTCGACTCAAAGAACATATCGATGG
* * *
67694308 ACACAAAGAGCCCTCGAAAATGCTAGATAAAAGACGTCTACTCCAAGAGAAAGAACTCCAAGTT
66 ACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGTT
* *
67694372 GATGGACATGAACAGCCCTCAGAAATGCTAGATAAACGGCGTCGACTCAAAGAACATATCGATGG
1 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACAGCGTCGACTCAAAGAACATATCGATGG
* * * * * *
67694437 ACATGAAAAGTCCTCGGAAATGCTAGATAAAAGACGTCAACTCCTAGA-AAATGAGCTCCAAGTT
66 ACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAA-GAACTCCAAGTT
* * * * * *
67694501 GATGGACATAAAGAGCCCTTAGAAATGCTAGATAAACAACGTCAACTCAAAGAACATGTCGATAG
1 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACAGCGTCGACTCAAAGAACATATCGATGG
* * *
67694566 ACACAAACAGCCCTCGAAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGTT
66 ACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGTT
*
67694630 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACGGCGTCGACTCAAAGAACATATCGATGG
1 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACAGCGTCGACTCAAAGAACATATCGATGG
* *
67694695 ACATC-AAGAGCCCTCAGG-AATGCTAGATAAACGATGTCGACTCCAAGAGAAAGAACTCCAAGT
66 ACA-CGAAGAGCCCTC-GGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGT
67694758 T
129 T
* *
67694759 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAAC-GACATCAACTCAAAGAACATATCGATG
1 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACAG-CGTCGACTCAAAGAACATATCGATG
* * *
67694823 GACACGAAGAG-CCTTGGCAAATGCTAGATAAAAGACGTCAACTCCAAGAGAAAAAACTCCAAGT
65 GACACGAAGAGCCCTCGG-AAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGT
67694887 T
129 T
*
67694888 GATGGACATGAAGAACCCTCAGAAATGCTAGATAAAC-GACGTCGACTCAAAGAACATATCGATG
1 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACAG-CGTCGACTCAAAGAACATATCGATG
* * ** * *
67694952 GACACGAAGGGCTCTCAAAAAAGCTAGATAAAATACGTCGACTCCAAGAGAAAGAACTCCAAGTT
65 GACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGTT
* *
67695017 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACGGCGTCGACTCAAAGAACATATTGATGG
1 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACAGCGTCGACTCAAAGAACATATCGATGG
* * * *
67695082 ACACGAAGAGCCCTTGGAAATGCTAGATAAAAGGCGTCAACT-C--GAGGAA-AA-T----GTT
66 ACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGTT
* * * * *
67695137 GATGGACA-CAGAGAGCCCTCAAAAATGCTAGATAAA-AGACATCGACTCCAAGAAAATGAGCTC
1 GATGGACATGA-AGAGCCCTCAGAAATGCTAGATAAACAG-CGTCGACTCAAAGAACAT-A--T-
* *
67695200 CATGTTGATGGACATGAAGAGCCCTCGGAAATGCTAGATAAACGACGTCGACTCCAAGA
60 C-----GATGGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGA
67695259 AAATGTTCAT
Statistics
Matches: 1661, Mismatches: 191, Indels: 137
0.84 0.10 0.07
Matches are distributed among these distances:
119 2 0.00
120 50 0.03
121 7 0.00
122 3 0.00
123 84 0.05
124 5 0.00
125 2 0.00
126 8 0.00
127 4 0.00
128 17 0.01
129 1354 0.82
130 19 0.01
131 3 0.00
132 4 0.00
133 5 0.00
134 4 0.00
135 6 0.00
136 4 0.00
137 6 0.00
138 65 0.04
139 4 0.00
140 5 0.00
ACGTcount: A:0.40, C:0.21, G:0.22, T:0.17
Consensus pattern (129 bp):
GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACAGCGTCGACTCAAAGAACATATCGATGG
ACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGTT
Found at i:67695051 original size:69 final size:67
Alignment explanation
Indices: 67694948--67695435 Score: 310
Period size: 69 Copynumber: 7.5 Consensus size: 67
67694938 AGAACATATC
* * * * * *
67694948 GATGGACACGAAGGGCTCTCAAAAAAGCTAGATAAAATACGTCGACTCCAAGAGAAAGAACTCCA
1 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAA-AACTCC-
67695013 AGTT
64 AGTT
* * *
67695017 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACGGCGTCGACT-CAA-AG-AACA-T--A-
1 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAAACTCCAG
67695075 TT
66 TT
* ** * * *
67695077 GATGGACACGAAGAGCCCTTGGAAATGCTAGATAAAAGGCGTCAACT-C--GAGGAAAA-T---G
1 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAAACTCCAG
67695135 TT
66 TT
* * * *
67695137 GATGGACA-CAGAGAGCCCTCAAAAATGCTAGATAAAAGACATCGACTCCAAGA-AAATGAGCTC
1 GATGGACATGA-AGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAA--AACTC
67695200 CATGTT
63 CA-GTT
* *
67695206 GATGGACATGAAGAGCCCTCGGAAATGCTAGATAAACGACGTCGACTCC-A-AG-AAAA-T---G
1 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAAACTCCAG
67695264 TT
66 TT
* * * * * * *
67695266 CATGGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACTTAGACTCCAAGA-AATTGAGCTCC
1 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAA--AAACTCC
*
67695330 GTGTT
64 -AGTT
* * * * ** * *
67695335 GCTAGACAT-AGAGAACTCTTTGAAATGCTAGATAAACGACGTCGACTCCAA-AAAAATAAGCTC
1 GATGGACATGA-AGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAA-AA-CTC
67695398 CATGTT
63 CA-GTT
* *
67695404 GTTAGACATGAAGAGCCCTC-GAAAATGCTAGA
1 GATGGACATGAAGAGCCCTCAG-AAATGCTAGA
67695436 AAATGAGCTT
Statistics
Matches: 331, Mismatches: 55, Indels: 66
0.73 0.12 0.15
Matches are distributed among these distances:
59 3 0.01
60 136 0.41
61 3 0.01
62 4 0.01
63 2 0.01
64 4 0.01
65 4 0.01
66 2 0.01
67 5 0.02
68 8 0.02
69 158 0.48
70 2 0.01
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.19
Consensus pattern (67 bp):
GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAAACTCCAG
TT
Found at i:67695305 original size:129 final size:129
Alignment explanation
Indices: 67695075--67695391 Score: 422
Period size: 129 Copynumber: 2.5 Consensus size: 129
67695065 AAAGAACATA
* * * * * * *
67695075 TTGATGGACACGAAGAGCCCTTGGAAATGCTAGATAAAAGGCGTCAACTCGAGGAAAATGTTGAT
1 TTGATGGACATGAAGAGCCCTTGGAAATGCTAGATAAACGACGTCGACTCCAAGAAAATGTTCAT
*
67695140 GGACACAGAGAGCCCTCAAAAATGCTAGATAAAAGACATCGACTCCAAGAAAATGAGCTCCATG
66 GGACACAGAGAGCCCTCAAAAATGCTAGATAAAAGACATAGACTCCAAGAAAATGAGCTCCATG
*
67695204 TTGATGGACATGAAGAGCCCTCGGAAATGCTAGATAAACGACGTCGACTCCAAGAAAATGTTCAT
1 TTGATGGACATGAAGAGCCCTTGGAAATGCTAGATAAACGACGTCGACTCCAAGAAAATGTTCAT
** * * *
67695269 GGACAC-GAAGAGCCCTCGGAAATGCTAGATAAAAGACTTAGACTCCAAGAAATTGAGCTCCGTG
66 GGACACAG-AGAGCCCTCAAAAATGCTAGATAAAAGACATAGACTCCAAGAAAATGAGCTCCATG
* * * * * *
67695333 TTGCTAGACAT-AGAGAACTCTTTGAAATGCTAGATAAACGACGTCGACTCCAAAAAAAT
1 TTGATGGACATGA-AGAGCCCTTGGAAATGCTAGATAAACGACGTCGACTCCAAGAAAAT
67695392 AAGCTCCATG
Statistics
Matches: 165, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
128 2 0.01
129 163 0.99
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.20
Consensus pattern (129 bp):
TTGATGGACATGAAGAGCCCTTGGAAATGCTAGATAAACGACGTCGACTCCAAGAAAATGTTCAT
GGACACAGAGAGCCCTCAAAAATGCTAGATAAAAGACATAGACTCCAAGAAAATGAGCTCCATG
Found at i:67695319 original size:60 final size:60
Alignment explanation
Indices: 67695201--67695320 Score: 195
Period size: 60 Copynumber: 2.0 Consensus size: 60
67695191 AATGAGCTCC
* * * *
67695201 ATGTTGATGGACATGAAGAGCCCTCGGAAATGCTAGATAAACGACGTCGACTCCAAGAAA
1 ATGTTCATGGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTAGACTCCAAGAAA
*
67695261 ATGTTCATGGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACTTAGACTCCAAGAAA
1 ATGTTCATGGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTAGACTCCAAGAAA
67695321 TTGAGCTCCG
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.18
Consensus pattern (60 bp):
ATGTTCATGGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTAGACTCCAAGAAA
Found at i:67695460 original size:48 final size:48
Alignment explanation
Indices: 67695387--67695483 Score: 149
Period size: 48 Copynumber: 2.0 Consensus size: 48
67695377 CGACTCCAAA
*
67695387 AAAATAAGCTCCATGTTGTTAGACATGAAGAGCCCTCGAAAATGCTAG
1 AAAATAAGCTCCATGTTGCTAGACATGAAGAGCCCTCGAAAATGCTAG
* * * *
67695435 AAAATGAGCTTCATGTTGCTGGACATGAAGAGCCCTCGGAAATGCTAG
1 AAAATAAGCTCCATGTTGCTAGACATGAAGAGCCCTCGAAAATGCTAG
67695483 A
1 A
67695484 TAAACGGCAT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.23
Consensus pattern (48 bp):
AAAATAAGCTCCATGTTGCTAGACATGAAGAGCCCTCGAAAATGCTAG
Found at i:67695544 original size:69 final size:69
Alignment explanation
Indices: 67695433--67695784 Score: 345
Period size: 69 Copynumber: 5.1 Consensus size: 69
67695423 CGAAAATGCT
* * * * * *
67695433 AGAAAATGAGCTTCATGTTGCTGGACATGAAGAGCCCTCGGAAATGCTAGATAAACGGCATCGAC
1 AGAAAATGGGCTCCATGTTGCTGGACATGAAGAGCCGTCAGAAATGCTAGATAAACGACGTCGAC
*
67695498 TCCG
66 TCCA
* *
67695502 AGAAAATGGGCTCCATGTTTCTGGACATGAAGAGCCGTCGGAAATGCTAGATAAACGACGTCGAC
1 AGAAAATGGGCTCCATGTTGCTGGACATGAAGAGCCGTCAGAAATGCTAGATAAACGACGTCGAC
67695567 TCCA
66 TCCA
** * * * * * * * ** *
67695571 AGAAGTTGAGCACCCTATTGTTGGACATGAAGAGCCGTC-GAAAGGGCTAGATAATCTCCGTCTA
1 AGAAAATGGGCTCCATGTTGCTGGACATGAAGAGCCGTCAGAAA-TGCTAGATAAACGACGTCGA
67695635 CTCCA
65 CTCCA
*
67695640 AGAAAA-GGAG-TCCACTGTTGCTGGACATGAAG-GACCGTCAGAAATGCTAGATAAACAACGTC
1 AGAAAATGG-GCTCCA-TGTTGCTGGACATGAAGAG-CCGTCAGAAATGCTAGATAAACGACGTC
*
67695702 TACTCCA
63 GACTCCA
* * * * * * *
67695709 AGAAAA-GGAGCCCCCTGTTGCTGGACATGAAGAGCCATCAGAAATTCTAGATAAACAACATCTA
1 AGAAAATGG-GCTCCATGTTGCTGGACATGAAGAGCCGTCAGAAATGCTAGATAAACGACGTCGA
67695773 CTCCA
65 CTCCA
67695778 AGGAAAA
1 A-GAAAA
67695785 CAGTCCCCTG
Statistics
Matches: 239, Mismatches: 36, Indels: 15
0.82 0.12 0.05
Matches are distributed among these distances:
68 8 0.03
69 219 0.92
70 12 0.05
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (69 bp):
AGAAAATGGGCTCCATGTTGCTGGACATGAAGAGCCGTCAGAAATGCTAGATAAACGACGTCGAC
TCCA
Found at i:67695600 original size:186 final size:186
Alignment explanation
Indices: 67695268--67695613 Score: 453
Period size: 186 Copynumber: 1.9 Consensus size: 186
67695258 AAAATGTTCA
* * *
67695268 TGGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACTTAGACTCCAAGAAATTGAGCTCCGTG
1 TGGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACATAGACTCCAAGAAAATGAGCTCCATG
** *
67695333 TTGCTAGACATAGAGAACTCTTTGAAATGCTAGATAAACGACGTCGACTCCAAAAAAATAAGCTC
66 TTGCTAGACATAGAGAACTCTCGGAAATGCTAGATAAACGACGTCGACTCCAAAAAAATAAGCAC
*
67695398 CATGTTGTTAGACATGAAGAGCCCTCGAAAATGCTAGAAAATGAGCTTCATGTTGC
131 CATATTGTTAGACATGAAGAGCCCTCGAAAATGCTAGAAAATGAGCTTCATGTTGC
* * * * * *
67695454 TGGACATGAAGAGCCCTCGGAAATGCTAGATAAACGGCATCGACTCCGAGAAAATGGGCTCCATG
1 TGGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACATAGACTCCAAGAAAATGAGCTCCATG
* * * * ** *
67695519 TTTCTGGACAT-GAAGAGC-CGTCGGAAATGCTAGATAAACGACGTCGACTCCAAGAAGTTGAGC
66 TTGCTAGACATAG-AGAACTC-TCGGAAATGCTAGATAAACGACGTCGACTCCAAAAAAATAAGC
* * *
67695582 ACCCTATTGTTGGACATGAAGAGCCGTCGAAA
129 ACCATATTGTTAGACATGAAGAGCCCTCGAAA
67695614 GGGCTAGATA
Statistics
Matches: 135, Mismatches: 23, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
185 2 0.01
186 133 0.99
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (186 bp):
TGGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACATAGACTCCAAGAAAATGAGCTCCATG
TTGCTAGACATAGAGAACTCTCGGAAATGCTAGATAAACGACGTCGACTCCAAAAAAATAAGCAC
CATATTGTTAGACATGAAGAGCCCTCGAAAATGCTAGAAAATGAGCTTCATGTTGC
Found at i:67695790 original size:138 final size:136
Alignment explanation
Indices: 67695448--67695784 Score: 390
Period size: 138 Copynumber: 2.4 Consensus size: 136
67695438 ATGAGCTTCA
* ** * *
67695448 TGTTGCTGGACATGAAGAGCCCTCGGAAATGCTAGATAAACGGCATCGACTCCGAGAAAATGG-G
1 TGTTGCTGGACATGAAGAGCCATC-GAAATGCTAGATAAACAACATCTACTCCAAGAAAA-GGAG
* * * **
67695512 CTCCATGTTTCTGGACATGAAGAGCCGTCGGAAATGCTAGATAAACGACGTCGACTCCAAGAAGT
64 -TCCATGTTGCTGGACATGAAGAGCCGTCAGAAATGCTAGATAAACAACGTCGACTCCAAGAAAA
*
67695577 TGAGCACCC
128 GGAGCACCC
* * * * * ** *
67695586 TATTGTTGGACATGAAGAGCCGTCGAAAGGGCTAGATAATCTCCGTCTACTCCAAGAAAAGGAGT
1 TGTTGCTGGACATGAAGAGCCATCGAAA-TGCTAGATAAACAACATCTACTCCAAGAAAAGGAGT
*
67695651 CCACTGTTGCTGGACATGAAG-GACCGTCAGAAATGCTAGATAAACAACGTCTACTCCAAGAAAA
65 CCA-TGTTGCTGGACATGAAGAG-CCGTCAGAAATGCTAGATAAACAACGTCGACTCCAAGAAAA
*
67695715 GGAGCCCCC
128 GGAGCACCC
*
67695724 TGTTGCTGGACATGAAGAGCCATCAGAAATTCTAGATAAACAACATCTACTCCAAGGAAAA
1 TGTTGCTGGACATGAAGAGCCATC-GAAATGCTAGATAAACAACATCTACTCCAA-GAAAA
67695785 CAGTCCCCTG
Statistics
Matches: 166, Mismatches: 27, Indels: 11
0.81 0.13 0.05
Matches are distributed among these distances:
137 11 0.07
138 146 0.88
139 9 0.05
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.20
Consensus pattern (136 bp):
TGTTGCTGGACATGAAGAGCCATCGAAATGCTAGATAAACAACATCTACTCCAAGAAAAGGAGTC
CATGTTGCTGGACATGAAGAGCCGTCAGAAATGCTAGATAAACAACGTCGACTCCAAGAAAAGGA
GCACCC
Found at i:67695820 original size:69 final size:70
Alignment explanation
Indices: 67695631--67695854 Score: 188
Period size: 69 Copynumber: 3.2 Consensus size: 70
67695621 ATAATCTCCG
* * * * ** * ** *
67695631 TCTACTCCAA-GAAAAGGAGTCCACTGTTGCTGGACATGAAGGACCGTCAGAAATGCTAGATAAA
1 TCTACTCCAAGGAAAAGCAGCCCCCTGTTGCTCGACACAAAGAACCACCAGAAATTCTAGATAAA
*
67695695 CAACG
66 CAACA
* * ** * *
67695700 TCTACTCCAA-GAAAAGGAGCCCCCTGTTGCTGGACATGAAGAGCCATCAGAAATTCTAGATAAA
1 TCTACTCCAAGGAAAAGCAGCCCCCTGTTGCTCGACACAAAGAACCACCAGAAATTCTAGATAAA
67695764 CAACA
66 CAACA
* * *
67695769 TCTACTCCAAGGAAAA-CAGTCCCCTGGTT-TTCGACACAAAGAACCACCAG-AATTGCTCGATA
1 TCTACTCCAAGGAAAAGCAGCCCCCT-GTTGCTCGACACAAAGAACCACCAGAAATT-CTAGATA
*
67695831 AACGACA
64 AACAACA
* *
67695838 TGTACTCCAAGAAAAAG
1 TCTACTCCAAGGAAAAG
67695855 AACCGCATAT
Statistics
Matches: 132, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
68 4 0.03
69 120 0.91
70 8 0.06
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.19
Consensus pattern (70 bp):
TCTACTCCAAGGAAAAGCAGCCCCCTGTTGCTCGACACAAAGAACCACCAGAAATTCTAGATAAA
CAACA
Found at i:67695820 original size:138 final size:138
Alignment explanation
Indices: 67695450--67695852 Score: 323
Period size: 138 Copynumber: 2.9 Consensus size: 138
67695440 GAGCTTCATG
* * ** * * *
67695450 TTGCTGGACATGAAGAGCCCTCGGAAA-TGCTAGATAAACGGCATCGACTCCGAGAAAATG-GGC
1 TTGCTGGACATGAAGAGCCATC-GAAAGGGCTAGATAAACAACATCTACTCCAAGAAAA-GCAG-
* * ** * ** * * **
67695513 TCCA-TGTTTCTGGACATGAAGAGCCGTCGGAAATGCTAGATAAACGACGTCGACTCCAAGAAGT
63 TCCACTGTTGCTCGACACAAAGAACCACCAGAAATGCTAGATAAACGACGTCTACTCCAAGAAAA
*
67695577 TGAGCACCCTA
128 GGAGCACCCTA
* * * ** * *
67695588 TTGTTGGACATGAAGAGCCGTCGAAAGGGCTAGATAATCTCCGTCTACTCCAAGAAAAGGAGTCC
1 TTGCTGGACATGAAGAGCCATCGAAAGGGCTAGATAAACAACATCTACTCCAAGAAAAGCAGTCC
* ** * ** *
67695653 ACTGTTGCTGGACATGAAGGACCGTCAGAAATGCTAGATAAACAACGTCTACTCCAAGAAAAGGA
66 ACTGTTGCTCGACACAAAGAACCACCAGAAATGCTAGATAAACGACGTCTACTCCAAGAAAAGGA
* *
67695718 GCCCCCTG
131 GCACCCTA
**
67695726 TTGCTGGACATGAAGAGCCATCAGAAA-TTCTAGATAAACAACATCTACTCCAAGGAAAA-CAGT
1 TTGCTGGACATGAAGAGCCATC-GAAAGGGCTAGATAAACAACATCTACTCCAA-GAAAAGCAGT
* * * * * *
67695789 CCCCTGGTT-TTCGACACAAAGAACCACCAGAATTGCTCGATAAACGACATGTACTCCAAGAAAA
64 CCACT-GTTGCTCGACACAAAGAACCACCAGAAATGCTAGATAAACGACGTCTACTCCAAGAAAA
67695853 AGAACCGCAT
Statistics
Matches: 216, Mismatches: 43, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
137 9 0.04
138 195 0.90
139 12 0.06
ACGTcount: A:0.34, C:0.24, G:0.23, T:0.20
Consensus pattern (138 bp):
TTGCTGGACATGAAGAGCCATCGAAAGGGCTAGATAAACAACATCTACTCCAAGAAAAGCAGTCC
ACTGTTGCTCGACACAAAGAACCACCAGAAATGCTAGATAAACGACGTCTACTCCAAGAAAAGGA
GCACCCTA
Found at i:67699324 original size:16 final size:15
Alignment explanation
Indices: 67699280--67699340 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 15
67699270 TGAATTTAGG
67699280 AATT-AAAATAATAT
1 AATTAAAAATAATAT
* *
67699294 AATTGAGAAATTATAT
1 AATT-AAAAATAATAT
67699310 -ATTAAAAATAATAT
1 AATTAAAAATAATAT
67699324 AAATTTAAGAAATAATA
1 -AA-TTAA-AAATAATA
67699341 AAAAATATTA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
14 13 0.35
15 3 0.08
16 9 0.24
17 4 0.11
18 8 0.22
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (15 bp):
AATTAAAAATAATAT
Found at i:67704486 original size:29 final size:29
Alignment explanation
Indices: 67704440--67704499 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
67704430 ATAAAATATG
*
67704440 TTAAAAATTTGTACACACAAATTGTTGAT
1 TTAAAAATTTGGACACACAAATTGTTGAT
*
67704469 TTAAAAATTTGGATACACAAATTGTTGAT
1 TTAAAAATTTGGACACACAAATTGTTGAT
67704498 TT
1 TT
67704500 GTCTAATGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.40
Consensus pattern (29 bp):
TTAAAAATTTGGACACACAAATTGTTGAT
Found at i:67711158 original size:21 final size:21
Alignment explanation
Indices: 67711124--67711164 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
67711114 AGACGAGCAA
* * *
67711124 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTAGAGTG
67711145 TACTCCAAAACAGGTAGAGT
1 TACTCCAAAACAGGTAGAGT
67711165 TTGAGCATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTAGAGTG
Found at i:67724791 original size:20 final size:20
Alignment explanation
Indices: 67724733--67724791 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
67724723 TCTTTTATGA
*
67724733 ATTATAACATCTTCAAAT-AT
1 ATTATAAC-TATTCAAATAAT
* **
67724753 A-TATAATTATTCATCTAAT
1 ATTATAACTATTCAAATAAT
67724772 ATTATAACTATTCAAATAAT
1 ATTATAACTATTCAAATAAT
67724792 GAGAAAGGAT
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
18 6 0.20
19 8 0.27
20 16 0.53
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.42
Consensus pattern (20 bp):
ATTATAACTATTCAAATAAT
Found at i:67737452 original size:31 final size:30
Alignment explanation
Indices: 67737393--67737461 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 30
67737383 TTGGTACAAT
* * * *
67737393 TATATACAAGAAATTTTTATTGTGATTTAAA
1 TATATACACGAAACTTTCATTGTAATTT-AA
*
67737424 TATATACACGAAACTTTCATTTTAATTTAA
1 TATATACACGAAACTTTCATTGTAATTTAA
67737454 T-TATACAC
1 TATATACAC
67737462 ATTTAAAGAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
29 7 0.21
30 3 0.09
31 23 0.70
ACGTcount: A:0.41, C:0.10, G:0.06, T:0.43
Consensus pattern (30 bp):
TATATACACGAAACTTTCATTGTAATTTAA
Found at i:67739676 original size:163 final size:158
Alignment explanation
Indices: 67739383--67739721 Score: 437
Period size: 159 Copynumber: 2.1 Consensus size: 158
67739373 AATTAAATAG
* *
67739383 GTTGACCTGTGATAGATAAAATGATCAAATCAAAATATTCGAAAAAATCAAAAATAATATTTCTG
1 GTTGACCTATGATAGATAAAATGATAAAATCAAAATATTCGAAAAAATCAAAAATAATATTTCTG
** * *
67739448 TCACTTTTTTTTGTTGTTTTAATGACCATTTTGTGTACTGCACATTTCATACAATTAGAATAAAG
66 TCACTCCTTTTTGTTGTTTTAATGACCATTTTGTGTACTACACATTTCATACAATTAAAATAAAG
67739513 TTTTGAAAATGATATTCATATGAATTAT
131 TTTTGAAAATGATATTCATATGAATTAT
* * * * **
67739541 GTTGGACCTATGATGGATATAATGATAAAATCAAAATATTTG-AAAATTCCAAAAATTGTATTTC
1 GTT-GACCTATGATAGATAAAATGATAAAATCAAAATATTCGAAAAAAT-CAAAAATAATATTTC
* * * *
67739605 TGTGACTCCTTTTTGTTGTTTTCATGACTTTCTTTTTTGTGTACTATACATTTCATACAATTAAA
64 TGTCACTCCTTTTTGTTGTTTTAATGAC---C-ATTTTGTGTACTACACATTTCATACAATTAAA
* * *
67739670 ATAAAGTTTTGAAAATTATATTCGTATTAATTAT
125 ATAAAGTTTTGAAAATGATATTCATATGAATTAT
*
67739704 GTTGACCTATGACAGATA
1 GTTGACCTATGATAGATA
67739722 TGAGAAAGGA
Statistics
Matches: 154, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
158 8 0.05
159 70 0.45
162 14 0.09
163 62 0.40
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.41
Consensus pattern (158 bp):
GTTGACCTATGATAGATAAAATGATAAAATCAAAATATTCGAAAAAATCAAAAATAATATTTCTG
TCACTCCTTTTTGTTGTTTTAATGACCATTTTGTGTACTACACATTTCATACAATTAAAATAAAG
TTTTGAAAATGATATTCATATGAATTAT
Found at i:67739910 original size:17 final size:17
Alignment explanation
Indices: 67739888--67739921 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
67739878 AATTTGTCAC
*
67739888 TCTCCTATTGAAAAGGG
1 TCTCCTATTAAAAAGGG
67739905 TCTCCTATTAAAAAGGG
1 TCTCCTATTAAAAAGGG
67739922 ATAAGAATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (17 bp):
TCTCCTATTAAAAAGGG
Found at i:67740270 original size:16 final size:16
Alignment explanation
Indices: 67740249--67740287 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
67740239 TTTGGTTCAC
*
67740249 TGTAATGAAATAGAAT
1 TGTAATAAAATAGAAT
*
67740265 TGTAATAAAATAGAGT
1 TGTAATAAAATAGAAT
67740281 TGTAATA
1 TGTAATA
67740288 TATTTTTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.49, C:0.00, G:0.18, T:0.33
Consensus pattern (16 bp):
TGTAATAAAATAGAAT
Found at i:67740851 original size:30 final size:31
Alignment explanation
Indices: 67740798--67740855 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
67740788 AATAGCTTAG
67740798 TGACTTAAATAAAAACTTTTGAATAATTCAA
1 TGACTTAAATAAAAACTTTTGAATAATTCAA
*
67740829 TGACTTAAATGAAAAC-TTTGAATAATT
1 TGACTTAAATAAAAACTTTTGAATAATT
67740856 TATGGACAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.36
Consensus pattern (31 bp):
TGACTTAAATAAAAACTTTTGAATAATTCAA
Found at i:67744004 original size:40 final size:40
Alignment explanation
Indices: 67743954--67744070 Score: 198
Period size: 40 Copynumber: 2.9 Consensus size: 40
67743944 CGTTTGGAGC
* * **
67743954 AAAAGCGCCGCTAAAGAGTGAGCAATAGCGGCGTTTAATT
1 AAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTAAGG
67743994 AAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTAAGG
1 AAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTAAGG
67744034 AAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTA
1 AAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTA
67744071 TAGATAACGC
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.33, C:0.16, G:0.30, T:0.21
Consensus pattern (40 bp):
AAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTAAGG
Found at i:67744304 original size:113 final size:112
Alignment explanation
Indices: 67744018--67744831 Score: 1364
Period size: 112 Copynumber: 7.3 Consensus size: 112
67744008 AGAGTGAGCA
** *
67744018 TTAGTGGCGTTTAAGGAAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
67744083 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGAC
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGAC
*
67744130 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGTCGTTTATAGATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
67744195 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGGAC
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTT-GGGGGGGAC
* * *
67744243 TTAGTGGCATTTATTGTAAAGCGCCGCTAAAGAGTGAGTATTAGTGGCGTTTATAGGTAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
* *
67744308 CAAATAATACACGCAGACGGTACCGTTTTGTGGCCTTT-GGGGGGAC
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGAC
* *
67744354 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGCGGCGTTTATAAATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
67744419 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGGAC
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTT-GGGGGGGAC
* *
67744467 TTAGTGGCGTTTATTGCAAAGCGCCTCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
67744532 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGAC
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGAC
*
67744579 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAAATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
67744644 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTT-GGGGGGAC
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGAC
* ** * * * *
67744690 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGCTTATAAAAAATGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
* *
67744755 CAAATAATACTCCCAGACGGTGCCGTTTTGTGTCCTTTGGGGGGG-C
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGAC
*
67744801 ATTAGTGGCGTTTTTTGTAAAGCGCCGCTAA
1 -TTAGTGGCGTTTATTGTAAAGCGCCGCTAA
67744832 TCTAGGTGTT
Statistics
Matches: 664, Mismatches: 33, Indels: 10
0.94 0.05 0.01
Matches are distributed among these distances:
111 208 0.31
112 243 0.37
113 213 0.32
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (112 bp):
TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGAC
Found at i:67745930 original size:84 final size:83
Alignment explanation
Indices: 67745841--67746041 Score: 321
Period size: 84 Copynumber: 2.4 Consensus size: 83
67745831 TAGTTAAACT
* *
67745841 TTTAGTGGCGTTTTTAAGAAAATGCCACAAATAATGCAATTCCAGACCACGAAAACGGTGTCGTT
1 TTTAGTGGCGTTTTTAA-AAAACGCCACAAAAAATGCAATTCCAGACCACGAAAACGGTGTCGTT
67745906 TCTGTTCACAGCTGTAATA
65 TCTGTTCACAGCTGTAATA
* * *
67745925 TTTAGTGGCGTTTTTCTAAAAACGTCACAAAAAATGCAATTCCAGACCACGAAAACGGTGTTGTT
1 TTTAGTGGCGTTTTT-AAAAAACGCCACAAAAAATGCAATTCCAGACCACGAAAACGGTGTCGTT
67745990 TCTGTTCACAGCTGTAATA
65 TCTGTTCACAGCTGTAATA
67746009 TTTAGTGGCGTTTTTACCAAAAACGCCACAAAA
1 TTTAGTGGCGTTTTTA--AAAAACGCCACAAAA
67746042 CGGTGTTAAT
Statistics
Matches: 107, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
84 92 0.86
85 15 0.14
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (83 bp):
TTTAGTGGCGTTTTTAAAAAACGCCACAAAAAATGCAATTCCAGACCACGAAAACGGTGTCGTTT
CTGTTCACAGCTGTAATA
Found at i:67747279 original size:11 final size:11
Alignment explanation
Indices: 67747242--67747281 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
67747232 GAATATCTCA
67747242 AACT-ATGGGT
1 AACTAATGGGT
*
67747252 AACTAGTGGGT
1 AACTAATGGGT
67747263 AACTAATGGGT
1 AACTAATGGGT
67747274 AACTAATG
1 AACTAATG
67747282 TATTATCATC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 4 0.15
11 23 0.85
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.28
Consensus pattern (11 bp):
AACTAATGGGT
Found at i:67748645 original size:17 final size:17
Alignment explanation
Indices: 67748623--67748921 Score: 145
Period size: 17 Copynumber: 16.6 Consensus size: 17
67748613 GTTAAATTTA
67748623 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
*
67748640 TTACTAAAATAAATTAC
1 TTACTAAAATACATTAC
*
67748657 TTACTAAAATTTGTTTAAATTTA-
1 TTACTAAAA------TACA-TTAC
67748680 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
67748697 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
* *
67748714 TTACATAAATTTGTTTAAATTTA-
1 TTAC-TAAA-----ATACA-TTAC
*
67748737 TTTCTAAAATACATTAC
1 TTACTAAAATACATTAC
*
67748754 TTACTAAAATTTGTTTAAATTTA-
1 TTACTAAAA------TACA-TTAC
67748777 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
67748794 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
*
67748811 TTACTAAAAT---TT-G
1 TTACTAAAATACATTAC
** *
67748824 TT--T-AAATTTATTAA
1 TTACTAAAATACATTAC
*
67748838 TTACTTAAATACATTAC
1 TTACTAAAATACATTAC
67748855 TTACTAAAATTTGTTTGA-ATTTA-
1 TTACTAAAA------T-ACA-TTAC
*
67748878 TTACTAAAATACATTGC
1 TTACTAAAATACATTAC
67748895 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
67748912 TTACTAAAAT
1 TTACTAAAAT
67748922 TTGTTTAAAT
Statistics
Matches: 223, Mismatches: 18, Indels: 82
0.69 0.06 0.25
Matches are distributed among these distances:
10 4 0.02
11 1 0.00
13 4 0.02
14 4 0.02
16 13 0.06
17 134 0.60
18 4 0.02
22 4 0.02
23 42 0.19
24 13 0.06
ACGTcount: A:0.43, C:0.12, G:0.02, T:0.43
Consensus pattern (17 bp):
TTACTAAAATACATTAC
Found at i:67748696 original size:40 final size:40
Alignment explanation
Indices: 67748640--67748803 Score: 157
Period size: 40 Copynumber: 3.7 Consensus size: 40
67748630 AATACATTAC
*
67748640 TTACTAAAATAAATTACTTACTAAAATTTGTTTAAATTTA
1 TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
*
67748680 TTACTAAAATACATTACTTACTAAAATACATTACTTACATAAATTTGTTTAAA
1 TTACTAAAATACATTACTTACTAAAAT---TT-GTT---TAAA----TTT--A
67748733 TTTATTTCTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
1 -TTA---CTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
67748777 TTACTAAAATACATTACTTACTAAAAT
1 TTACTAAAATACATTACTTACTAAAAT
67748804 ACATTACTTA
Statistics
Matches: 104, Mismatches: 3, Indels: 34
0.74 0.02 0.24
Matches are distributed among these distances:
40 50 0.48
43 5 0.05
44 3 0.03
46 3 0.03
47 4 0.04
50 4 0.04
51 3 0.03
53 3 0.03
54 5 0.05
57 24 0.23
ACGTcount: A:0.44, C:0.11, G:0.02, T:0.43
Consensus pattern (40 bp):
TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
Found at i:67748702 original size:57 final size:57
Alignment explanation
Indices: 67748614--67748763 Score: 266
Period size: 57 Copynumber: 2.6 Consensus size: 57
67748604 CGATTGAATG
67748614 TTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTAC-TAAAATTTGT
1 TTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACAT-AAATTTGT
*
67748671 TTAAATTTATTACTAAAATACATTACTTACTAAAATACATTACTTACATAAATTTGT
1 TTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACATAAATTTGT
*
67748728 TTAAATTTATTTCTAAAATACATTACTTACTAAAAT
1 TTAAATTTATTACTAAAATACATTACTTACTAAAAT
67748764 TTGTTTAAAT
Statistics
Matches: 90, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
57 89 0.99
58 1 0.01
ACGTcount: A:0.45, C:0.11, G:0.01, T:0.43
Consensus pattern (57 bp):
TTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACATAAATTTGT
Found at i:67748759 original size:97 final size:97
Alignment explanation
Indices: 67748643--67748954 Score: 500
Period size: 97 Copynumber: 3.2 Consensus size: 97
67748633 ACATTACTTA
*
67748643 CTAAAATAAATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
1 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
67748708 CATTACTTAC-ATAAATTTGTTTAAATTTATTT
66 CATTACTTACTA-AAATTTGTTTAAATTTATTT
67748740 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
1 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
67748805 CATTACTTACTAAAATTTGTTTAAATTTATTAATT
66 CATTACTTACTAAAATTTGTTTAAATTTA-T--TT
* * *
67748840 ACTTAAATACATTACTTACTAAAATTTGTTTGAATTTATTACTAAAATACATTGCTTACTAAAAT
1 -CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAAT
*
67748905 ACATTACTTACTAAAATTTGTTTAAATTTATTA
65 ACATTACTTACTAAAATTTGTTTAAATTTATTT
* **
67748938 CTTAAATATGTTACTTA
1 CTAAAATACATTACTTA
67748955 AATTTATTAC
Statistics
Matches: 203, Mismatches: 7, Indels: 10
0.92 0.03 0.05
Matches are distributed among these distances:
97 106 0.52
98 3 0.01
100 3 0.01
101 91 0.45
ACGTcount: A:0.42, C:0.11, G:0.03, T:0.44
Consensus pattern (97 bp):
CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
CATTACTTACTAAAATTTGTTTAAATTTATTT
Found at i:67748801 original size:57 final size:60
Alignment explanation
Indices: 67748740--67748864 Score: 211
Period size: 57 Copynumber: 2.1 Consensus size: 60
67748730 AAATTTATTT
67748740 CTAAAATACATTACTTACTAAAATTTGTTTAAA-T-TT-ATTACTAAAATACATTACTTA
1 CTAAAATACATTACTTACTAAAATTTGTTTAAATTATTAATTACTAAAATACATTACTTA
*
67748797 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTAATTACTTAAATACATTACTTA
1 CTAAAATACATTACTTACTAAAATTTGTTTAAA-TTATTAATTACTAAAATACATTACTTA
67748858 CTAAAAT
1 CTAAAAT
67748865 TTGTTTGAAT
Statistics
Matches: 63, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
57 33 0.52
59 1 0.02
60 2 0.03
61 27 0.43
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.42
Consensus pattern (60 bp):
CTAAAATACATTACTTACTAAAATTTGTTTAAATTATTAATTACTAAAATACATTACTTA
Found at i:67748881 original size:40 final size:43
Alignment explanation
Indices: 67748789--67748904 Score: 166
Period size: 44 Copynumber: 2.7 Consensus size: 43
67748779 ACTAAAATAC
*
67748789 ATTACTTACTAAAATACATTACTTACTAAAATTTGTTTAAATTT
1 ATTAATTACTAAAATACATTACTTACTAAAATTTGTTTAAA-TT
* *
67748833 ATTAATTACTTAAATACATTACTTACTAAAATTTGTTTGAA-T
1 ATTAATTACTAAAATACATTACTTACTAAAATTTGTTTAAATT
*
67748875 -TT-ATTACTAAAATACATTGCTTACTAAAAT
1 ATTAATTACTAAAATACATTACTTACTAAAAT
67748905 ACATTACTTA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
40 26 0.39
41 2 0.03
42 1 0.01
44 38 0.57
ACGTcount: A:0.41, C:0.11, G:0.03, T:0.44
Consensus pattern (43 bp):
ATTAATTACTAAAATACATTACTTACTAAAATTTGTTTAAATT
Found at i:67748908 original size:57 final size:57
Alignment explanation
Indices: 67748838--67748945 Score: 189
Period size: 57 Copynumber: 1.9 Consensus size: 57
67748828 AATTTATTAA
* *
67748838 TTACTTAAATACATTACTTACTAAAATTTGTTTGAATTTATTACTAAAATACATTGC
1 TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTGC
*
67748895 TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTTAAATA
1 TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATA
67748946 TGTTACTTAA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
57 48 1.00
ACGTcount: A:0.41, C:0.11, G:0.04, T:0.44
Consensus pattern (57 bp):
TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTGC
Found at i:67748944 original size:13 final size:13
Alignment explanation
Indices: 67748926--67748996 Score: 106
Period size: 13 Copynumber: 5.5 Consensus size: 13
67748916 TAAAATTTGT
67748926 TTAAATTTATTAC
1 TTAAATTTATTAC
* *
67748939 TTAAATATGTTAC
1 TTAAATTTATTAC
67748952 TTAAATTTATTAC
1 TTAAATTTATTAC
* *
67748965 TTAAATATGTTAC
1 TTAAATTTATTAC
67748978 TTAAATTTATTAC
1 TTAAATTTATTAC
67748991 TTAAAT
1 TTAAAT
67748997 AATTATAAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 50 1.00
ACGTcount: A:0.39, C:0.07, G:0.03, T:0.51
Consensus pattern (13 bp):
TTAAATTTATTAC
Found at i:67748962 original size:26 final size:26
Alignment explanation
Indices: 67748926--67748997 Score: 144
Period size: 26 Copynumber: 2.8 Consensus size: 26
67748916 TAAAATTTGT
67748926 TTAAATTTATTACTTAAATATGTTAC
1 TTAAATTTATTACTTAAATATGTTAC
67748952 TTAAATTTATTACTTAAATATGTTAC
1 TTAAATTTATTACTTAAATATGTTAC
67748978 TTAAATTTATTACTTAAATA
1 TTAAATTTATTACTTAAATA
67748998 ATTATAAATA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.50
Consensus pattern (26 bp):
TTAAATTTATTACTTAAATATGTTAC
Found at i:67749226 original size:73 final size:73
Alignment explanation
Indices: 67749143--67749292 Score: 300
Period size: 73 Copynumber: 2.1 Consensus size: 73
67749133 TAAAATAAAA
67749143 TATAAAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTA
1 TATAAAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTA
67749208 TTAATAAT
66 TTAATAAT
67749216 TATAAAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTA
1 TATAAAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTA
67749281 TTAATAAT
66 TTAATAAT
67749289 TATA
1 TATA
67749293 TTAGTAATGT
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 77 1.00
ACGTcount: A:0.51, C:0.01, G:0.07, T:0.41
Consensus pattern (73 bp):
TATAAAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTA
TTAATAAT
Found at i:67749259 original size:38 final size:38
Alignment explanation
Indices: 67749144--67749260 Score: 118
Period size: 38 Copynumber: 3.2 Consensus size: 38
67749134 AAAATAAAAT
67749144 ATAAAAAAATATGTGGAATATTAAAATTGACTATTAAA
1 ATAAAAAAATATGTGGAATATTAAAATTGACTATTAAA
*** * * * *
67749182 ATAAAATGTTAT-T---TTATTAAATATT-ATTAATAATT
1 ATAAAAAAATATGTGGAATATTAAA-ATTGACTATTAA-A
67749217 ATAAAAAAATATGTGGAATATTAAAATTGACTATTAAA
1 ATAAAAAAATATGTGGAATATTAAAATTGACTATTAAA
67749255 ATAAAA
1 ATAAAA
67749261 TGTTATTTTA
Statistics
Matches: 58, Mismatches: 14, Indels: 14
0.67 0.16 0.16
Matches are distributed among these distances:
34 13 0.22
35 12 0.21
36 1 0.02
37 1 0.02
38 18 0.31
39 13 0.22
ACGTcount: A:0.54, C:0.02, G:0.08, T:0.37
Consensus pattern (38 bp):
ATAAAAAAATATGTGGAATATTAAAATTGACTATTAAA
Found at i:67749373 original size:25 final size:26
Alignment explanation
Indices: 67749329--67749828 Score: 697
Period size: 26 Copynumber: 20.1 Consensus size: 26
67749319 ATTTTATTAA
67749329 ATAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
*
67749355 ATAATACAT-TTAACTTACATTACTTAC
1 ATAATACATAATAACTTACA--ACTTAC
67749382 ATAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
67749408 ATAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
*
67749434 ATAATACAT-TTAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
67749459 ATAATAC---AT---TT--AACTTAC
1 ATAATACATAATAACTTACAACTTAC
*
67749477 ATAATACAT-TTAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
*
67749502 ACAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
67749528 ATAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
*
67749554 ACAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
67749580 ATAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
* *
67749606 ATAATACAT-TTAACTTATAACTTAC
1 ATAATACATAATAACTTACAACTTAC
*
67749631 ATAATACAT-TTAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
67749656 ATAATAC---AT---TT--AACTTAC
1 ATAATACATAATAACTTACAACTTAC
*
67749674 ATAATACAT-TTAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
*
67749699 ACAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
67749725 ATAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
*
67749751 ATAATACAT-TTAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
* *
67749776 ACAATACAT-TTAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
67749801 ATAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
67749827 AT
1 AT
67749829 TTAACTTACA
Statistics
Matches: 432, Mismatches: 22, Indels: 40
0.87 0.04 0.08
Matches are distributed among these distances:
18 28 0.06
20 6 0.01
23 6 0.01
25 153 0.35
26 215 0.50
27 15 0.03
28 9 0.02
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (26 bp):
ATAATACATAATAACTTACAACTTAC
Found at i:67749836 original size:11 final size:10
Alignment explanation
Indices: 67749820--67749873 Score: 55
Period size: 9 Copynumber: 5.7 Consensus size: 10
67749810 AATAACTTAC
67749820 AACTTACATTT
1 AACTTACA-TT
67749831 AACTTACA-T
1 AACTTACATT
67749840 AA--TACATTT
1 AACTTACA-TT
67749849 AACTTACA-T
1 AACTTACATT
67749858 AACTTACA-T
1 AACTTACATT
67749867 AACTTAC
1 AACTTAC
67749874 CATTGCAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
7 4 0.10
9 23 0.59
11 12 0.31
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.37
Consensus pattern (10 bp):
AACTTACATT
Found at i:67755347 original size:21 final size:21
Alignment explanation
Indices: 67755321--67755391 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
67755311 CTACAACTTA
* *
67755321 AAGCAGAGGCGGAAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* *
67755342 AAGCAGCGACTGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* * *
67755363 AAGCGGAGGCTGCAGCAAGAG
1 AAGCAGAGGCTGCAGCGAGGG
67755384 AAGCAGAG
1 AAGCAGAG
67755392 CAGAGCAAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.34, C:0.18, G:0.45, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGGG
Found at i:67755768 original size:41 final size:43
Alignment explanation
Indices: 67755715--67755820 Score: 144
Period size: 41 Copynumber: 2.5 Consensus size: 43
67755705 GTTTTTGTAT
* * * *
67755715 AAAAGCGCCACTAAAGAACATGTTCTTTTGCGGCG-TTTG-TA
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCGATTAGAAA
*
67755756 AAAAATGCCACTAAAGAACATGTTCTTTAGCGGCGATTAGAAA
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCGATTAGAAA
*
67755799 AAAAACGCCGCTAAAGAACATG
1 AAAAACGCCACTAAAGAACATG
67755821 ATAACGCCGC
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
41 32 0.57
42 3 0.05
43 21 0.38
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.23
Consensus pattern (43 bp):
AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCGATTAGAAA
Found at i:67755826 original size:21 final size:21
Alignment explanation
Indices: 67755802--67755841 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
67755792 TTAGAAAAAA
67755802 AACGCCGCTAAAGAACATGAT
1 AACGCCGCTAAAGAACATGAT
67755823 AACGCCGCTAAAGAACATG
1 AACGCCGCTAAAGAACATG
67755842 TTCTTTAGCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.42, C:0.25, G:0.20, T:0.12
Consensus pattern (21 bp):
AACGCCGCTAAAGAACATGAT
Found at i:67755882 original size:42 final size:42
Alignment explanation
Indices: 67755823--67756069 Score: 379
Period size: 42 Copynumber: 5.9 Consensus size: 42
67755813 AGAACATGAT
* *
67755823 AACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCCTA
1 AACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTA
* * *
67755865 AACGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTTAC-A
1 AACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTT-CTA
*
67755907 AACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTA
1 AACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTA
*
67755949 AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTA
1 AACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTA
*
67755991 AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTA
1 AACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTA
* * *
67756033 AGCGCCGCTAAAGAACATGGTCTTTAACGGCGTTTTT
1 AACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTT
67756070 GTTTGTAAAC
Statistics
Matches: 192, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
41 1 0.01
42 190 0.99
43 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (42 bp):
AACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTA
Found at i:67761226 original size:23 final size:23
Alignment explanation
Indices: 67761179--67761227 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
67761169 TTTTTTTGCT
67761179 AATTTAGGTTTTATTTTTTAATTA
1 AATTTAGGTTTTATTTTTT-ATTA
*
67761203 AATTTAGTTTTTAATTTTTT-TTA
1 AATTTAGGTTTT-ATTTTTTATTA
67761226 AA
1 AA
67761228 AATAATCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 5 0.22
24 11 0.48
25 7 0.30
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (23 bp):
AATTTAGGTTTTATTTTTTATTA
Found at i:67763329 original size:73 final size:73
Alignment explanation
Indices: 67763252--67763400 Score: 253
Period size: 73 Copynumber: 2.0 Consensus size: 73
67763242 TGTAGTTAAG
* *
67763252 TATATATTAATGATAATTTATTTTACCGATGATGACTCGATCTTAAATAAAATTTATTTGAATGT
1 TATATATTAATGATAATTCATTTTACCGATGATGACTCGATCTTAAATAAAATTTATTTAAATGT
67763317 TTGTAATT
66 TTGTAATT
* * *
67763325 TATATATTAATGATAGTTCATTTTACTGATGATGACTTGATCTTAAATAAAATTTATTTAAATGT
1 TATATATTAATGATAATTCATTTTACCGATGATGACTCGATCTTAAATAAAATTTATTTAAATGT
67763390 TTGTAATT
66 TTGTAATT
67763398 TAT
1 TAT
67763401 TAAAATATAA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.36, C:0.06, G:0.11, T:0.48
Consensus pattern (73 bp):
TATATATTAATGATAATTCATTTTACCGATGATGACTCGATCTTAAATAAAATTTATTTAAATGT
TTGTAATT
Found at i:67764319 original size:15 final size:15
Alignment explanation
Indices: 67764290--67764328 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
67764280 ATGAAAAAGG
67764290 GAAGAAAATAGAGAGA
1 GAAGAAAA-AGAGAGA
67764306 GAAGAAAAAGAGAGA
1 GAAGAAAAAGAGAGA
67764321 -AA-AAAAAG
1 GAAGAAAAAG
67764329 TTAAAAAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 6 0.26
14 2 0.09
15 7 0.30
16 8 0.35
ACGTcount: A:0.69, C:0.00, G:0.28, T:0.03
Consensus pattern (15 bp):
GAAGAAAAAGAGAGA
Found at i:67769167 original size:8 final size:8
Alignment explanation
Indices: 67769154--67769187 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
67769144 AGGCTTTTTC
67769154 TTTCTGGT
1 TTTCTGGT
67769162 TTTCTGGT
1 TTTCTGGT
67769170 TTTCTGGT
1 TTTCTGGT
*
67769178 TTTCTAGT
1 TTTCTGGT
67769186 TT
1 TT
67769188 CCGCCACTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.03, C:0.12, G:0.21, T:0.65
Consensus pattern (8 bp):
TTTCTGGT
Found at i:67769369 original size:29 final size:28
Alignment explanation
Indices: 67769315--67769376 Score: 70
Period size: 29 Copynumber: 2.2 Consensus size: 28
67769305 AACTCTTCAA
**
67769315 ATTTTCGAAATTTAGTCCATTTACTTTT
1 ATTTTCGAAATTTAGTCCATCCACTTTT
* *
67769343 ATTTTCAGGAATTTAGTCCCTCCACTTTT
1 ATTTTC-GAAATTTAGTCCATCCACTTTT
*
67769372 CTTTT
1 ATTTT
67769377 TTATGGAATA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 6 0.21
29 22 0.79
ACGTcount: A:0.21, C:0.19, G:0.08, T:0.52
Consensus pattern (28 bp):
ATTTTCGAAATTTAGTCCATCCACTTTT
Found at i:67778033 original size:18 final size:18
Alignment explanation
Indices: 67778012--67778116 Score: 93
Period size: 18 Copynumber: 5.8 Consensus size: 18
67778002 GATCATCAAT
*
67778012 CTTACTCAAATCACCGAG
1 CTTACTCAAATCACCAAG
* *
67778030 CTTACTCAAACCTCCAAG
1 CTTACTCAAATCACCAAG
* * *
67778048 CGTACTGAAATCGCCAAG
1 CTTACTCAAATCACCAAG
* * * * *
67778066 CGTGCACAAATCTCCGAG
1 CTTACTCAAATCACCAAG
* *
67778084 ATTACTCAAATCGCCAAG
1 CTTACTCAAATCACCAAG
67778102 CTTACTCAAATCACC
1 CTTACTCAAATCACC
67778117 TCCAACCTGC
Statistics
Matches: 67, Mismatches: 20, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 67 1.00
ACGTcount: A:0.33, C:0.33, G:0.12, T:0.21
Consensus pattern (18 bp):
CTTACTCAAATCACCAAG
Found at i:67778112 original size:36 final size:36
Alignment explanation
Indices: 67778013--67778113 Score: 112
Period size: 36 Copynumber: 2.8 Consensus size: 36
67778003 ATCATCAATC
* * * *
67778013 TTACTCAAATCACCGAGCTTACTCAAACCTCCAAGC
1 TTACTCAAATCGCCAAGCTTACTCAAATCTCCAAGA
* * * * * *
67778049 GTACTGAAATCGCCAAGCGTGCACAAATCTCCGAGA
1 TTACTCAAATCGCCAAGCTTACTCAAATCTCCAAGA
67778085 TTACTCAAATCGCCAAGCTTACTCAAATC
1 TTACTCAAATCGCCAAGCTTACTCAAATC
67778114 ACCTCCAACC
Statistics
Matches: 50, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
36 50 1.00
ACGTcount: A:0.34, C:0.32, G:0.13, T:0.22
Consensus pattern (36 bp):
TTACTCAAATCGCCAAGCTTACTCAAATCTCCAAGA
Found at i:67781528 original size:114 final size:113
Alignment explanation
Indices: 67781325--67781706 Score: 493
Period size: 114 Copynumber: 3.4 Consensus size: 113
67781315 TTAGTAGCCA
* *
67781325 CTCCTGGAGAACTTTGGGCAGTCGAGATGGCATCGGATGAGACCTGCTTGATGAACCCAGAGGCA
1 CTCCTGGAGAA-TTTGGGCAGCCGAGATGGCATCGGATGAGACCTGCTTGATGAATCCAGAGGCA
*
67781390 GTGCCCAACAGTCCAGAATTCTGAGCCTGAGGAGACCCTTCCCCAGACC
65 GTGCCCAACAGTCCAGAATGCTGAGCCTGAGGAGACCCTTCCCCAGACC
* *
67781439 CTCCTGGAGACATTTGGGCAACCGAGATGGCATCGGATGAGACCTGCTTGATGAATCCAGAGACA
1 CTCCTGGAGA-ATTTGGGCAGCCGAGATGGCATCGGATGAGACCTGCTTGATGAATCCAGAGGCA
* * * *
67781504 GTACCCAACAGTTCAGAAGGCTGAGCCTGAGGAGACCC-TCCCTCAAACC
65 GTGCCCAACAGTCCAGAATGCTGAGCCTGAGGAGACCCTTCCC-CAGACC
* * *
67781553 CTCCTGGAG--TTTGGGCAGCCGAGATGGCATCGGAAGAGATCTGCTTGATGAGTCCAGAGGCAG
1 CTCCTGGAGAATTTGGGCAGCCGAGATGGCATCGGATGAGACCTGCTTGATGAATCCAGAGGCAG
* * * * *
67781616 TGCCCGACAGTCCAGAATGCTGAACCTGAGGAGGCCCTCCCCCAG-CTG
66 TGCCCAACAGTCCAGAATGCTGAGCCTGAGGAGACCCTTCCCCAGAC-C
* * * * *
67781664 CTCCTGAAGACATTTGTGCAGCCGAGATAGCTTCAGATGAGAC
1 CTCCTGGAGA-ATTTGGGCAGCCGAGATGGCATCGGATGAGAC
67781707 ATCCTAGACA
Statistics
Matches: 231, Mismatches: 30, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
110 1 0.00
111 90 0.39
112 3 0.01
113 4 0.02
114 132 0.57
115 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.29, T:0.19
Consensus pattern (113 bp):
CTCCTGGAGAATTTGGGCAGCCGAGATGGCATCGGATGAGACCTGCTTGATGAATCCAGAGGCAG
TGCCCAACAGTCCAGAATGCTGAGCCTGAGGAGACCCTTCCCCAGACC
Found at i:67783768 original size:15 final size:15
Alignment explanation
Indices: 67783748--67783801 Score: 56
Period size: 15 Copynumber: 3.7 Consensus size: 15
67783738 TGATAAACTA
67783748 AAAAATTAAGTGTTG
1 AAAAATTAAGTGTTG
*
67783763 AAAAA-TATGTGTTG
1 AAAAATTAAGTGTTG
* * *
67783777 AAAAAATAAATATTG
1 AAAAATTAAGTGTTG
*
67783792 AATAATTAAG
1 AAAAATTAAG
67783802 GGTTATATTA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
14 13 0.42
15 18 0.58
ACGTcount: A:0.54, C:0.00, G:0.15, T:0.31
Consensus pattern (15 bp):
AAAAATTAAGTGTTG
Found at i:67784513 original size:26 final size:25
Alignment explanation
Indices: 67784461--67784509 Score: 64
Period size: 24 Copynumber: 1.9 Consensus size: 25
67784451 AAGAAATTTA
*
67784461 AAAAATGTATAAATAATTAATAAAGT
1 AAAAATG-ATAAATAATGAATAAAGT
67784487 AAAAATG-TAAATAATGAACTAAA
1 AAAAATGATAAATAATGAA-TAAA
67784510 AGTACGTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 10 0.48
25 4 0.19
26 7 0.33
ACGTcount: A:0.63, C:0.02, G:0.08, T:0.27
Consensus pattern (25 bp):
AAAAATGATAAATAATGAATAAAGT
Found at i:67787312 original size:3 final size:3
Alignment explanation
Indices: 67787304--67787346 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
67787294 ATTTTTCCGT
67787304 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
67787347 ATGTTTTACA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:67787438 original size:6 final size:6
Alignment explanation
Indices: 67787419--67787448 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
67787409 GACGGAGTTC
*
67787419 ATTTTT ATTCTT ATTTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
67787449 TTTAATTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:67787908 original size:18 final size:18
Alignment explanation
Indices: 67787882--67787918 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
67787872 AAATTTAAAT
* *
67787882 TTTATATTTATATTTACA
1 TTTACATTTATATTAACA
67787900 TTTACATTTATATTAACA
1 TTTACATTTATATTAACA
67787918 T
1 T
67787919 CAAATAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (18 bp):
TTTACATTTATATTAACA
Found at i:67788486 original size:12 final size:12
Alignment explanation
Indices: 67788469--67788494 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
67788459 TATAAGACTC
67788469 TAACCTAAATTT
1 TAACCTAAATTT
67788481 TAACCTAAATTT
1 TAACCTAAATTT
67788493 TA
1 TA
67788495 TGACTCAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (12 bp):
TAACCTAAATTT
Found at i:67788610 original size:11 final size:11
Alignment explanation
Indices: 67788594--67788650 Score: 64
Period size: 11 Copynumber: 5.3 Consensus size: 11
67788584 GACACATTCA
*
67788594 TATATTTGTAT
1 TATATTTATAT
67788605 TATATTTATAT
1 TATATTTATAT
*
67788616 TAT-TTTCT-T
1 TATATTTATAT
*
67788625 ATATATTTGTAT
1 -TATATTTATAT
67788637 TATATTTATAT
1 TATATTTATAT
67788648 TAT
1 TAT
67788651 TTTCTTACAT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
9 1 0.03
10 7 0.18
11 30 0.77
12 1 0.03
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.65
Consensus pattern (11 bp):
TATATTTATAT
Found at i:67788629 original size:32 final size:32
Alignment explanation
Indices: 67788593--67788657 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
67788583 TGACACATTC
67788593 ATATATTTGTATTATATTTATATTATTTTCTT
1 ATATATTTGTATTATATTTATATTATTTTCTT
67788625 ATATATTTGTATTATATTTATATTATTTTCTT
1 ATATATTTGTATTATATTTATATTATTTTCTT
67788657 A
1 A
67788658 CATCATGCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (32 bp):
ATATATTTGTATTATATTTATATTATTTTCTT
Found at i:67794647 original size:19 final size:18
Alignment explanation
Indices: 67794623--67794663 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
67794613 TGTGTGTGTG
* *
67794623 TATAAAAGTAGTTTAAACA
1 TATAAAAGAACTTTAAA-A
67794642 TATAAAAGAACTTTAAAA
1 TATAAAAGAACTTTAAAA
67794660 TATA
1 TATA
67794664 TTAGATTATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (18 bp):
TATAAAAGAACTTTAAAA
Found at i:67803516 original size:18 final size:18
Alignment explanation
Indices: 67803493--67803527 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
67803483 TTTACGTCAT
67803493 ACATGACATATATGTGTG
1 ACATGACATATATGTGTG
* *
67803511 ACATGAGATGTATGTGT
1 ACATGACATATATGTGT
67803528 TATTCATGAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (18 bp):
ACATGACATATATGTGTG
Found at i:67805356 original size:20 final size:19
Alignment explanation
Indices: 67805317--67805356 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
67805307 TATTTTAGTA
*
67805317 ATTTAATTATAATTTTTTT
1 ATTTAATTATAATGTTTTT
*
67805336 ATTTAATTATCGATGTTTTT
1 ATTTAATTAT-AATGTTTTT
67805356 A
1 A
67805357 AATTTTGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (19 bp):
ATTTAATTATAATGTTTTT
Found at i:67808558 original size:14 final size:15
Alignment explanation
Indices: 67808541--67808574 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
67808531 TAAATAATCA
*
67808541 TTTTAAT-ATAATAT
1 TTTTAATGATAACAT
67808555 TTTTAATGATAACAT
1 TTTTAATGATAACAT
67808570 TTTTA
1 TTTTA
67808575 TTTTTATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (15 bp):
TTTTAATGATAACAT
Found at i:67809310 original size:33 final size:33
Alignment explanation
Indices: 67809273--67809377 Score: 122
Period size: 33 Copynumber: 3.2 Consensus size: 33
67809263 GCCTTCTTAT
* * *
67809273 ATAATCTTGAAAATCTTTATGAGCAGCTGCGAA
1 ATAATCTTGAAAATCTTCATGAGCATCTTCGAA
* *
67809306 ATAATC-TGCAAAATCTTGATAAGCATCTTCGAA
1 ATAATCTTG-AAAATCTTCATGAGCATCTTCGAA
* * *
67809339 ATAATCTTCAAAATCCTCGTGAGCATCTTCGAA
1 ATAATCTTGAAAATCTTCATGAGCATCTTCGAA
67809372 ATAATC
1 ATAATC
67809378 ACCACCCCGC
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
32 2 0.03
33 58 0.95
34 1 0.02
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.30
Consensus pattern (33 bp):
ATAATCTTGAAAATCTTCATGAGCATCTTCGAA
Found at i:67810906 original size:13 final size:13
Alignment explanation
Indices: 67810890--67810914 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67810880 ATAAAAAGAG
67810890 ATAATATTTAGAC
1 ATAATATTTAGAC
67810903 ATAATATTTAGA
1 ATAATATTTAGA
67810915 ATTATCCATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40
Consensus pattern (13 bp):
ATAATATTTAGAC
Found at i:67812555 original size:23 final size:23
Alignment explanation
Indices: 67812527--67812577 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
67812517 ATGCCTCTAA
*
67812527 AATAGTAACAATAACA-ACAAAAT
1 AATAGTAAC-ATAACAGAAAAAAT
*
67812550 AATAGTAACATAATAGAAAAAAT
1 AATAGTAACATAACAGAAAAAAT
67812573 AATAG
1 AATAG
67812578 CAAAACAGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 5 0.20
23 20 0.80
ACGTcount: A:0.65, C:0.08, G:0.08, T:0.20
Consensus pattern (23 bp):
AATAGTAACATAACAGAAAAAAT
Found at i:67812864 original size:16 final size:16
Alignment explanation
Indices: 67812825--67812891 Score: 55
Period size: 17 Copynumber: 4.1 Consensus size: 16
67812815 ATTTTATTTT
*
67812825 TATTTTATTA-TTTAA
1 TATTTTATCATTTTAA
* *
67812840 TATAATTATGATTTTAA
1 TAT-TTTATCATTTTAA
*
67812857 TATTTTATCATTTGTTA
1 TATTTTATCATTT-TAA
* *
67812874 TATATAATCATTTTAA
1 TATTTTATCATTTTAA
67812890 TA
1 TA
67812892 CAATGATGAT
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
15 3 0.07
16 17 0.41
17 21 0.51
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (16 bp):
TATTTTATCATTTTAA
Found at i:67813221 original size:17 final size:17
Alignment explanation
Indices: 67813201--67813233 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
67813191 ATTTTATTAA
67813201 ATACAT-TATATTATAAT
1 ATACATATATA-TATAAT
67813218 ATACATATATATATAA
1 ATACATATATATATAA
67813234 GATAACAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (17 bp):
ATACATATATATATAAT
Found at i:67813442 original size:15 final size:15
Alignment explanation
Indices: 67813422--67813453 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
67813412 AAATAATCTC
*
67813422 CAAAATCATCATCAT
1 CAAAATAATCATCAT
67813437 CAAAATAATCATCAT
1 CAAAATAATCATCAT
67813452 CA
1 CA
67813454 CCCCACATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (15 bp):
CAAAATAATCATCAT
Found at i:67819558 original size:35 final size:35
Alignment explanation
Indices: 67819512--67819581 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
67819502 GATTTTGGAA
67819512 GACAGCAAATATCATTTCAATTACAATCTCAATGT
1 GACAGCAAATATCATTTCAATTACAATCTCAATGT
*
67819547 GACAGCAAATATCATTTCAATTTCAATCTCAATGT
1 GACAGCAAATATCATTTCAATTACAATCTCAATGT
67819582 TATCGGCTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (35 bp):
GACAGCAAATATCATTTCAATTACAATCTCAATGT
Found at i:67838910 original size:23 final size:22
Alignment explanation
Indices: 67838859--67838910 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
67838849 CCTCGTCTTT
*
67838859 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
67838881 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
67838904 TTCTTTT
1 TTCTTTT
67838911 TCAATTTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:67838919 original size:12 final size:12
Alignment explanation
Indices: 67838868--67838922 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
67838858 TTTCTTTTGT
67838868 TTCTTTTTCTAAC
1 TTCTTTTTC-AAC
* *
67838881 -TCATTTTC-TC
1 TTCTTTTTCAAC
67838891 TTCTTTCTTCAAC
1 TTCTTT-TTCAAC
*
67838904 TTCTTTTTCAAT
1 TTCTTTTTCAAC
67838916 TTCTTTT
1 TTCTTTT
67838923 CTGTTTCACA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 1 0.03
11 4 0.12
12 22 0.65
13 7 0.21
ACGTcount: A:0.13, C:0.24, G:0.00, T:0.64
Consensus pattern (12 bp):
TTCTTTTTCAAC
Found at i:67838929 original size:17 final size:18
Alignment explanation
Indices: 67838904--67838941 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
67838894 TTTCTTCAAC
* *
67838904 TTCTTTTTCA-ATTTCTT
1 TTCTGTTTCACATTCCTT
67838921 TTCTGTTTCACATTCCTT
1 TTCTGTTTCACATTCCTT
67838939 TTC
1 TTC
67838942 ACTCTCAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.11, C:0.24, G:0.03, T:0.63
Consensus pattern (18 bp):
TTCTGTTTCACATTCCTT
Found at i:67842781 original size:14 final size:15
Alignment explanation
Indices: 67842762--67842792 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
67842752 CAAGAAATGG
67842762 GAAGAAAAAT-TGTT
1 GAAGAAAAATGTGTT
67842776 GAAGAAAAATGTGTT
1 GAAGAAAAATGTGTT
67842791 GA
1 GA
67842793 TGAACCTGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.48, C:0.00, G:0.26, T:0.26
Consensus pattern (15 bp):
GAAGAAAAATGTGTT
Found at i:67844318 original size:3 final size:3
Alignment explanation
Indices: 67844303--67844334 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
67844293 TTTGAACAAG
*
67844303 ATA ATA ATT ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
67844335 GAGGTTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
ATA
Found at i:67853474 original size:18 final size:18
Alignment explanation
Indices: 67853451--67853485 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
67853441 ATTTTTTAAT
67853451 TTTTTAATTTTAAAATAC
1 TTTTTAATTTTAAAATAC
*
67853469 TTTTTATTTTTAAAATA
1 TTTTTAATTTTAAAATA
67853486 AATTTTTCGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTTTAATTTTAAAATAC
Found at i:67853491 original size:19 final size:18
Alignment explanation
Indices: 67853451--67853492 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
67853441 ATTTTTTAAT
*
67853451 TTTTTAATTTTAAAATAC
1 TTTTTAATTTTAAAATAA
*
67853469 TTTTTATTTTTAAAATAAA
1 TTTTTAATTTTAAAAT-AA
67853488 TTTTT
1 TTTTT
67853493 CGTGTTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTTAATTTTAAAATAA
Found at i:67855830 original size:141 final size:141
Alignment explanation
Indices: 67855576--67855835 Score: 305
Period size: 141 Copynumber: 1.8 Consensus size: 141
67855566 TATTCCACGT
* *
67855576 GATATTTCTGGTCTATCCTCTTTGATACATCTTGATCTTAGTGGTAACAATTTCATCAGCATACC
1 GATATTTCTGGTCTATCCTCTTTGATACATCTTGATCTTAGGGGTAACAATTTCATCACCATACC
* * * ** *
67855641 TGCATCTCTTACTCAGCTCTCGAAGCTTTCGTTTCTTGATTTGTCAAATTGCAACATGTGCACAC
66 TGCAGCTCTTACTCAACTCTAGAAGCTTTAATTTCTTGATTTATCAAATTGCAACATGTGCACAC
67855706 TTGGTGAAGCA
131 TTGGTGAAGCA
* * *
67855717 GATA-TTCATGGTCTATCCTCTTTGAGT-TATCTTTATCTTAGGGGTAACAATTTCATCACCATT
1 GATATTTC-TGGTCTATCCTCTTTGA-TACATCTTGATCTTAGGGGTAACAATTTCATCACCATA
*** *
67855780 CCTTTGGCTCTTACTCAACT-TAGCAGGC-TTAATTTCCTTCGA-TTATCAAATTGCAA
64 CCTGCAGCTCTTACTCAACTCTAG-AAGCTTTAATTT-CTT-GATTTATCAAATTGCAA
67855836 GATGCTTAAA
Statistics
Matches: 99, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
140 10 0.10
141 86 0.87
142 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (141 bp):
GATATTTCTGGTCTATCCTCTTTGATACATCTTGATCTTAGGGGTAACAATTTCATCACCATACC
TGCAGCTCTTACTCAACTCTAGAAGCTTTAATTTCTTGATTTATCAAATTGCAACATGTGCACAC
TTGGTGAAGCA
Found at i:67858149 original size:52 final size:53
Alignment explanation
Indices: 67858092--67858197 Score: 135
Period size: 52 Copynumber: 2.0 Consensus size: 53
67858082 GGAATGCATA
* * * *
67858092 AAAGTCTATTCGAATCAATTTA-TCTGACCGAAACTGATGTAATCCCTTT-TAT
1 AAAGTCTATTCAAATAAACTTATTCAG-CCGAAACTGATGTAATCCCTTTATAT
* *
67858144 AAAGTCTGTTCAAATAAACTTATTCAGTCGAAACTGATGTAATCCCTTTATAT
1 AAAGTCTATTCAAATAAACTTATTCAGCCGAAACTGATGTAATCCCTTTATAT
67858197 A
1 A
67858198 CATATCTAGA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
52 39 0.85
53 7 0.15
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (53 bp):
AAAGTCTATTCAAATAAACTTATTCAGCCGAAACTGATGTAATCCCTTTATAT
Found at i:67858537 original size:37 final size:36
Alignment explanation
Indices: 67858479--67858551 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 36
67858469 GTCTCCAAAT
* *
67858479 TCACATTTCAATTAAATTTCACTTTTTCACTTTCAA
1 TCACATTTCAATTAAAATTCACTTTTCCACTTTCAA
*
67858515 TCACAATTT-AATTCAAAATTCACTTTTCCATTTTCAA
1 TCAC-ATTTCAATT-AAAATTCACTTTTCCACTTTCAA
67858552 GTCAATATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 8 0.25
37 24 0.75
ACGTcount: A:0.33, C:0.22, G:0.00, T:0.45
Consensus pattern (36 bp):
TCACATTTCAATTAAAATTCACTTTTCCACTTTCAA
Found at i:67859334 original size:13 final size:13
Alignment explanation
Indices: 67859318--67859347 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
67859308 TCTGTTCTTC
67859318 TTTTGTTTCTTTT
1 TTTTGTTTCTTTT
67859331 TTTTGTTTCTTTT
1 TTTTGTTTCTTTT
67859344 TTTT
1 TTTT
67859348 ACTTACTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.00, C:0.07, G:0.07, T:0.87
Consensus pattern (13 bp):
TTTTGTTTCTTTT
Found at i:67859346 original size:12 final size:12
Alignment explanation
Indices: 67859312--67859346 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
67859302 TCTGTTTCTG
*
67859312 TTCTTCTTTTGT
1 TTCTTTTTTTGT
67859324 TTCTTTTTTTTGT
1 TTC-TTTTTTTGT
67859337 TTCTTTTTTT
1 TTCTTTTTTT
67859347 TACTTACTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.00, C:0.11, G:0.06, T:0.83
Consensus pattern (12 bp):
TTCTTTTTTTGT
Found at i:67865874 original size:48 final size:48
Alignment explanation
Indices: 67865803--67865895 Score: 132
Period size: 48 Copynumber: 1.9 Consensus size: 48
67865793 GCCATGTACT
* * * *
67865803 GCTGGAAGATCACTCAACTCAGTCCCATCATTAGTTGAAGAATCAGAA
1 GCTGGAAGATCACCCAACCCAGTCCCAACATCAGTTGAAGAATCAGAA
* *
67865851 GCTGGAAGATTACCCGACCCAGTCCCAACATCAGTTGAAGAATCA
1 GCTGGAAGATCACCCAACCCAGTCCCAACATCAGTTGAAGAATCA
67865896 TGAGACTGGG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 39 1.00
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.20
Consensus pattern (48 bp):
GCTGGAAGATCACCCAACCCAGTCCCAACATCAGTTGAAGAATCAGAA
Found at i:67867935 original size:45 final size:45
Alignment explanation
Indices: 67867857--67867957 Score: 139
Period size: 45 Copynumber: 2.2 Consensus size: 45
67867847 GCCCACGTGC
*
67867857 CAATTTCTTACTTTGCATACCAGCACTCCAATTTTGACCACCATTT
1 CAATTT-TGACTTTGCATACCAGCACTCCAATTTTGACCACCATTT
* * ** *
67867903 CGATTTTGACTTTGCATGCCATTACTCTAATTTTGACCACCATTT
1 CAATTTTGACTTTGCATACCAGCACTCCAATTTTGACCACCATTT
67867948 CAATTTTGAC
1 CAATTTTGAC
67867958 CATAAATTTT
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
45 43 0.90
46 5 0.10
ACGTcount: A:0.25, C:0.27, G:0.09, T:0.40
Consensus pattern (45 bp):
CAATTTTGACTTTGCATACCAGCACTCCAATTTTGACCACCATTT
Found at i:67867954 original size:18 final size:18
Alignment explanation
Indices: 67867885--67867959 Score: 60
Period size: 18 Copynumber: 3.7 Consensus size: 18
67867875 ACCAGCACTC
67867885 CAATTTTGACCACCATTT
1 CAATTTTGACCACCATTT
*
67867903 CGATTTTGACTTTGCATGCCATTACT
1 CAATTTTGAC----CA--CCATT--T
67867929 CTAATTTTGACCACCATTT
1 C-AATTTTGACCACCATTT
67867948 CAATTTTGACCA
1 CAATTTTGACCA
67867960 TAAATTTTTC
Statistics
Matches: 46, Mismatches: 2, Indels: 18
0.70 0.03 0.27
Matches are distributed among these distances:
18 20 0.43
19 2 0.04
21 5 0.11
22 2 0.04
23 2 0.04
24 5 0.11
26 2 0.04
27 8 0.17
ACGTcount: A:0.25, C:0.25, G:0.09, T:0.40
Consensus pattern (18 bp):
CAATTTTGACCACCATTT
Found at i:67879202 original size:24 final size:24
Alignment explanation
Indices: 67879175--67879226 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
67879165 TTAGTAAGTC
*
67879175 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
67879199 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
67879223 AAAT
1 AAAT
67879227 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:67881169 original size:24 final size:24
Alignment explanation
Indices: 67881142--67881193 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
67881132 TTAGTAAGTC
*
67881142 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
67881166 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
67881190 AAAT
1 AAAT
67881194 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:67894885 original size:22 final size:22
Alignment explanation
Indices: 67894857--67894899 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
67894847 GCTTCCATAA
67894857 CCACAAATACACTCTTTCTATT
1 CCACAAATACACTCTTTCTATT
67894879 CCACAAATACACTCTTTCTAT
1 CCACAAATACACTCTTTCTAT
67894900 ACTAACACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.35
Consensus pattern (22 bp):
CCACAAATACACTCTTTCTATT
Found at i:67896162 original size:20 final size:20
Alignment explanation
Indices: 67896137--67896174 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
67896127 CCACTCAACC
67896137 TGTGGGAACTTAACAGATAG
1 TGTGGGAACTTAACAGATAG
67896157 TGTGGGAACTTAACAGAT
1 TGTGGGAACTTAACAGAT
67896175 GTCAATACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (20 bp):
TGTGGGAACTTAACAGATAG
Found at i:67897770 original size:20 final size:20
Alignment explanation
Indices: 67897745--67897796 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
67897735 TATCTTTAAA
67897745 TAAT-AAATAAATACACTAAT
1 TAATAAAATAAATACA-TAAT
*
67897765 TAATAAAATAAATATATAAT
1 TAATAAAATAAATACATAAT
*
67897785 TAATGAAATAAA
1 TAATAAAATAAA
67897797 AATAACTAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 19 0.66
21 10 0.34
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (20 bp):
TAATAAAATAAATACATAAT
Found at i:67900772 original size:7 final size:7
Alignment explanation
Indices: 67900760--67900809 Score: 55
Period size: 7 Copynumber: 7.0 Consensus size: 7
67900750 ATTTCTTCTC
67900760 ATTTTAA
1 ATTTTAA
67900767 ATTTTAA
1 ATTTTAA
**
67900774 ATTTTTT
1 ATTTTAA
* *
67900781 GTGTTATA
1 ATTTTA-A
67900789 ATTTTAA
1 ATTTTAA
67900796 ATTTTAA
1 ATTTTAA
67900803 ATTTTAA
1 ATTTTAA
67900810 GTTATAGTTT
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
7 30 0.88
8 4 0.12
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (7 bp):
ATTTTAA
Found at i:67902290 original size:91 final size:91
Alignment explanation
Indices: 67902161--67902368 Score: 317
Period size: 91 Copynumber: 2.3 Consensus size: 91
67902151 TTGATTTTAG
* * *
67902161 TAAATTCATATAAGAACATTTTATGATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
67902226 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
*
67902253 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
67902318 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* * *
67902344 CAAATTCATATAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
67902369 GTTTTAATTA
Statistics
Matches: 106, Mismatches: 10, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
91 90 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:67902337 original size:26 final size:28
Alignment explanation
Indices: 67902283--67902343 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
67902273 TATTATCAAG
* *
67902283 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
67902311 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
67902337 AATTATA
1 AATTATA
67902344 CAAATTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:67902343 original size:44 final size:43
Alignment explanation
Indices: 67902201--67902343 Score: 121
Period size: 44 Copynumber: 3.2 Consensus size: 43
67902191 GAATTTTATG
* *
67902201 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTT
1 AAATTATATATTATTATTAAATTATA-TTAATAATAATTATTTT
* ** * *
67902245 AAATTGTATAAATTCATATAAGAAAATT-TATT-ATCAAGAATT-TTATG
1 AAA-T-TATATATT-AT-T-ATTAAATTATATTAAT-AATAATTATT-TT
67902292 AAATTATATATTATTATTAAATTATATGTAATAATAATTATTTT
1 AAATTATATATTATTATTAAATTATAT-TAATAATAATTATTTT
67902336 AAATTATA
1 AAATTATA
67902344 CAAATTCATA
Statistics
Matches: 76, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
42 6 0.08
43 4 0.05
44 21 0.28
45 12 0.16
46 11 0.14
47 13 0.17
48 3 0.04
49 6 0.08
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.48
Consensus pattern (43 bp):
AAATTATATATTATTATTAAATTATATTAATAATAATTATTTT
Found at i:67902508 original size:120 final size:120
Alignment explanation
Indices: 67902384--67903156 Score: 1361
Period size: 120 Copynumber: 6.4 Consensus size: 120
67902374 AATTATTTTA
* * * *
67902384 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AATTTATCTTT
67902448 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
67902504 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTT
*
67902569 ATATTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
** * * *
67902624 AATTTTATTAAACCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AATTTATCTTT
67902688 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
67902744 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTT
*
67902809 ATATTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
67902864 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAAGTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTT
*
67902929 ATAGTATCATATATTATGATTTGAGTAAATTCATATAATAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
67902984 AATTTTATTAAATTATATATTTTAATTTTAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTT
67903049 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
67903104 AATTTTATTAAATTATATAATTTAATTATAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
67903157 TAAATATGAT
Statistics
Matches: 624, Mismatches: 26, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
119 2 0.00
120 618 0.99
121 4 0.01
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:67902544 original size:15 final size:15
Alignment explanation
Indices: 67902509--67902560 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
67902499 TTAAGAATTT
*
67902509 TATTAAATTAT-ATA
1 TATTTAATTATAATA
67902523 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
67902537 TATTTAATAATAAT-
1 TATTTAATTATAATA
67902551 TATGTTAATT
1 TAT-TTAATT
67902561 TATCTTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:67902784 original size:15 final size:15
Alignment explanation
Indices: 67902749--67902800 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
67902739 TTAAGAATTT
*
67902749 TATTAAATTAT-ATA
1 TATTTAATTATAATA
67902763 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
67902777 TATTTAATAATAAT-
1 TATTTAATTATAATA
67902791 TATGTTAATT
1 TAT-TTAATT
67902801 TATCTTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:67902904 original size:15 final size:15
Alignment explanation
Indices: 67902869--67902909 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
67902859 TTAAGAATTT
*
67902869 TATTAAATTAT-ATA
1 TATTTAATTATAATA
67902883 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
67902897 TATTTAATAATAA
1 TATTTAATTATAA
67902910 GTATGTTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 8 0.35
14 5 0.22
15 10 0.43
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:67903143 original size:15 final size:15
Alignment explanation
Indices: 67903109--67903150 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
67903099 TTAAGAATTT
*
67903109 TATTAAATTAT-ATA
1 TATTTAATTATAATA
67903123 -ATTTAATTATAATA
1 TATTTAATTATAATA
*
67903137 TATTTAATAATAAT
1 TATTTAATTATAAT
67903151 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 3 0.12
15 12 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:67903390 original size:45 final size:44
Alignment explanation
Indices: 67903300--67903393 Score: 118
Period size: 45 Copynumber: 2.1 Consensus size: 44
67903290 TTACACCTCT
* *
67903300 ATTACATTCAACCAAACACAAGAATACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACACAAGAATACTATTACACCTCTAATCC
* * *
67903344 ATTACATTCAACCAAACA-ATTGATTTGCTATTACACCTCTAATCC
1 ATTACATTCAACCAAACACA-AGA-ATACTATTACACCTCTAATCC
67903389 ATTAC
1 ATTAC
67903394 GCCTCTATTC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
43 1 0.02
44 20 0.47
45 22 0.51
ACGTcount: A:0.37, C:0.28, G:0.04, T:0.31
Consensus pattern (44 bp):
ATTACATTCAACCAAACACAAGAATACTATTACACCTCTAATCC
Found at i:67904888 original size:3 final size:3
Alignment explanation
Indices: 67904882--67904916 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
67904872 GATGTTGTTG
67904882 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
67904917 CTATCTATGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:67909476 original size:36 final size:36
Alignment explanation
Indices: 67909431--67909502 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
67909421 TTTTTTTTAC
67909431 ACATATGTAGCTTTTATTTCATTTAAAGTAATCATT
1 ACATATGTAGCTTTTATTTCATTTAAAGTAATCATT
*
67909467 ACATTTGTAGCTTTTATTTCATTTAAAGTAATCATT
1 ACATATGTAGCTTTTATTTCATTTAAAGTAATCATT
67909503 CTAAATTTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.32, C:0.11, G:0.08, T:0.49
Consensus pattern (36 bp):
ACATATGTAGCTTTTATTTCATTTAAAGTAATCATT
Found at i:67910333 original size:17 final size:17
Alignment explanation
Indices: 67910311--67910344 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
67910301 ATCCACTAAT
*
67910311 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
67910328 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
67910345 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:67914972 original size:17 final size:17
Alignment explanation
Indices: 67914950--67914983 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
67914940 ATCCACTAAT
*
67914950 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
67914967 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
67914984 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:67918340 original size:16 final size:15
Alignment explanation
Indices: 67918305--67918340 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
67918295 GTATAGTGAA
67918305 AAAAATTTGAAGGAT
1 AAAAATTTGAAGGAT
*
67918320 GAAAATTTGAAGGAAT
1 AAAAATTTGAAGG-AT
67918336 AAAAA
1 AAAAA
67918341 ATATTATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.58, C:0.00, G:0.19, T:0.22
Consensus pattern (15 bp):
AAAAATTTGAAGGAT
Found at i:67925290 original size:14 final size:15
Alignment explanation
Indices: 67925271--67925301 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
67925261 CAAGAAATGG
67925271 GAAGAAAAAT-TGTT
1 GAAGAAAAATGTGTT
67925285 GAAGAAAAATGTGTT
1 GAAGAAAAATGTGTT
67925300 GA
1 GA
67925302 TGAACCCGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.48, C:0.00, G:0.26, T:0.26
Consensus pattern (15 bp):
GAAGAAAAATGTGTT
Found at i:67927551 original size:141 final size:141
Alignment explanation
Indices: 67927297--67927556 Score: 305
Period size: 141 Copynumber: 1.8 Consensus size: 141
67927287 TATTCCACGT
*
67927297 GATATTTCTGGTCTATCCTCTTTGATACATCTTGATCTTAGTGGTAACAATTTCATCAGCATACC
1 GATATTTCTGGTCTATCCTCTTTGATACATCTTGATCTTAGTGGTAACAATTTCATCACCATACC
* * * * * *
67927362 TGCATCTCTTACTCAGCTCTCGAAGCTTTCGTTTCTTGATTTGTCAAATTGCAACATGTGCACTC
66 TGCAGCTCTTACTCAACTCTAGAAGCTTTAGTTTCTGGATTTATCAAATTGCAACATGTGCACTC
67927427 TTGGTGAAGCA
131 TTGGTGAAGCA
* *
67927438 GATA-TTCATGGTCTATCCTCTTTGAGT-GATCTTTATCTTA-TGGGTAACAATTTCATCACCAT
1 GATATTTC-TGGTCTATCCTCTTTGA-TACATCTTGATCTTAGT-GGTAACAATTTCATCACCAT
* *** * *
67927500 TCCTTTGGCTCTTACTCAACT-TAGCAGGCTTTATTTTCTGGGA-TTATCAAATTGCAA
63 ACCTGCAGCTCTTACTCAACTCTAG-AAGCTTTAGTTTCT-GGATTTATCAAATTGCAA
67927557 GATGCTTAAA
Statistics
Matches: 99, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
140 6 0.06
141 90 0.91
142 3 0.03
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.40
Consensus pattern (141 bp):
GATATTTCTGGTCTATCCTCTTTGATACATCTTGATCTTAGTGGTAACAATTTCATCACCATACC
TGCAGCTCTTACTCAACTCTAGAAGCTTTAGTTTCTGGATTTATCAAATTGCAACATGTGCACTC
TTGGTGAAGCA
Found at i:67930213 original size:114 final size:114
Alignment explanation
Indices: 67929902--67930644 Score: 588
Period size: 113 Copynumber: 6.5 Consensus size: 114
67929892 ATGCACCTTG
* * * * * * * *
67929902 AAATCTCTTAACCAAAACGC-TGTGTTTTCGTCTTGATG-ATTCCTAAAAGTAGTGGCGTTTATG
1 AAATATCTTAACCAAAACGCAT-CGTTTTGGTCTTGATGTA-TACTAGAATTAGTGGCGCTTACG
* * * * * *
67929965 CG--AAACGCCGTTAAAGGACAGTAATAGCGGTGCTTTTTGGAAACGCCGCA
64 -GTAAAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTATGGAAGCGCCGCA
* ** * * * *
67930015 AAATAGCTTAACCAAAACGCAGAG-TTTGGTCTTGAGGTAT-CTTAGAATTACTGGCGTTTATGG
1 AAATATCTTAACCAAAACGCATCGTTTTGGTCTTGATGTATAC-TAGAATTAGTGGCGCTTACGG
* * * *
67930078 GAAAACGCCGTTAAAGGATAGTAATAGCGGCGCTTTACGGAAGCGCCGCA
65 TAAAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTATGGAAGCGCCGCA
* * * * * *
67930128 AACTATCTGAACCGAAACACATCGTTTTGGTCTTGATGTATACTAGAACTAGTGGCGCATACGGT
1 AAATATCTTAACCAAAACGCATCGTTTTGGTCTTGATGTATACTAGAATTAGTGGCGCTTACGGT
* * * ** *
67930193 CAAACGCCGCTAAAGAATAGTATTAGCGGCGATTCGTGGCTAGCGCCGCA
66 AAAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTATGG-AAGCGCCGCA
* * * * *
67930243 AAATATATTAACCAAAACGCAACGTTTTGATCTTAATGTATA-TAAAATTAGTGGCGCTTACGGT
1 AAATATCTTAACCAAAACGCATCGTTTTGGTCTTGATGTATACTAGAATTAGTGGCGCTTACGGT
* * *
67930307 AAACCGCCGCTAAAGAATATTAATAGCGGCGCTTTGTGAGAAGCGCCGCA
66 AAAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTATG-GAAGCGCCGCA
** * * * *
67930357 AAATATCTTAACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCACTTA-GG-
1 AAATATCTTAACCAAAACGCATCGTTTTGGTCTTGATGTATACTAGAATTAGTGGCGCTTACGGT
* * * * * * * ** * *
67930420 GAAACGCCGTTAAAGCATAGTATTAACGACGCTTGGATAAAAGCGCCACC
66 AAAACGCCGCTAAAGAATAGTAATAGCGGCGCTT-TATGGAAGCGCCGCA
* * * * *
67930470 AATTATCTGAACCAAAACGCATCGTTTTGGTCTTGATGTATACTTGATTTAGTGGCGATTACGGT
1 AAATATCTTAACCAAAACGCATCGTTTTGGTCTTGATGTATACTAGAATTAGTGGCGCTTACGGT
** * * * * ** * *
67930535 AAAATACCGCTAAAGCATAGTATTAGCGGCGATTTGTTGCTAGCACCGCG
66 AAAACGCCGCTAAAGAATAGTAATAGCGGCGCTTT-ATGGAAGCGCCGCA
* * * * * *
67930585 ACATACCATAAACAAAACGCAGT-GTTTTGGTCTTGATTTATACTAAAATTAGTGGCGCTT
1 AAATATCTTAACCAAAACGCA-TCGTTTTGGTCTTGATGTATACTAGAATTAGTGGCGCTT
67930645 TGTTGAAAGC
Statistics
Matches: 499, Mismatches: 116, Indels: 28
0.78 0.18 0.04
Matches are distributed among these distances:
111 2 0.00
112 29 0.06
113 164 0.33
114 161 0.32
115 142 0.28
116 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.27
Consensus pattern (114 bp):
AAATATCTTAACCAAAACGCATCGTTTTGGTCTTGATGTATACTAGAATTAGTGGCGCTTACGGT
AAAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTATGGAAGCGCCGCA
Found at i:67930497 original size:342 final size:342
Alignment explanation
Indices: 67929986--67930644 Score: 824
Period size: 342 Copynumber: 1.9 Consensus size: 342
67929976 TAAAGGACAG
* * * * *
67929986 TAATAGCGGTGCTTTTTGGAAACGCCGCAAAATAGCTTAACCAAAACGCAGAGTTTGGTCTTGAG
1 TAATAGCGGCGCTTTGTGGAAACGCCGCAAAATAGCTTAACCAAAACGCAAAGTTTGGCCTCGAG
** ** * * * *
67930051 GTATCTTAGAATTACTGGCGTTTATGGGAAAACGCCGTTAAAGGATAGTAATAGCGGCGCTTTAC
66 GTATAGTAGAATTACTGGCACTTATGGGAAAACGCCGTTAAAGCATAGTAATAACGACGCTTGAC
** * *
67930116 GGAAGCGCCGCAAACTATCTGAACCGAAACACATCGTTTTGGTCTTGATGTATACTAGAACTAGT
131 AAAAGCGCCACAAACTATCTGAACCAAAACACATCGTTTTGGTCTTGATGTATACTAGAACTAGT
* * *
67930181 GGCGCA-TACGGTCAAACGCCGCTAAAGAATAGTATTAGCGGCGATTCGTGGCTAGCGCCGCAAA
196 GGCG-ATTACGGTAAAACACCGCTAAAGAATAGTATTAGCGGCGATTCGTGGCTAGCACCGCAAA
* *
67930245 ATA-TATTAACCAAAACGCAACGTTTTGATCTTAATGTATA-TAAAATTAGTGGCGCTTACGGTA
260 ATACCA-TAAACAAAACGCAACGTTTTGATCTTAATGTATACTAAAATTAGTGGCGCTTACGGTA
67930308 AACCGCCGCTAAAGAATAT
324 AACCGCCGCTAAAGAATAT
* * *
67930327 TAATAGCGGCGCTTTGTGAGAAGCGCCGCAAAATATCTTAACCAAAACGCATAATTTTGGCCTCG
1 TAATAGCGGCGCTTTGTG-GAAACGCCGCAAAATAGCTTAACCAAAACGCA-AAGTTTGGCCTCG
* * *
67930392 ATGTATAGTAGAATTAGTGGCACTTA-GGG-AAACGCCGTTAAAGCATAGTATTAACGACGCTTG
64 AGGTATAGTAGAATTACTGGCACTTATGGGAAAACGCCGTTAAAGCATAGTAATAACGACGCTT-
* * * * * **
67930455 GATAAAAGCGCCACCAATTATCTGAACCAAAACGCATCGTTTTGGTCTTGATGTATACTTGATTT
128 GACAAAAGCGCCACAAACTATCTGAACCAAAACACATCGTTTTGGTCTTGATGTATACTAGAACT
* * * * *
67930520 AGTGGCGATTACGGTAAAATACCGCTAAAGCATAGTATTAGCGGCGATTTGTTGCTAGCACCGCG
193 AGTGGCGATTACGGTAAAACACCGCTAAAGAATAGTATTAGCGGCGATTCGTGGCTAGCACCGCA
* ** * * *
67930585 ACATACCATAAACAAAACGCAGTGTTTTGGTCTTGATTTATACTAAAATTAGTGGCGCTT
258 AAATACCATAAACAAAACGCAACGTTTTGATCTTAATGTATACTAAAATTAGTGGCGCTT
67930645 TGTTGAAAGC
Statistics
Matches: 266, Mismatches: 46, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
341 46 0.17
342 173 0.65
343 47 0.18
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.27
Consensus pattern (342 bp):
TAATAGCGGCGCTTTGTGGAAACGCCGCAAAATAGCTTAACCAAAACGCAAAGTTTGGCCTCGAG
GTATAGTAGAATTACTGGCACTTATGGGAAAACGCCGTTAAAGCATAGTAATAACGACGCTTGAC
AAAAGCGCCACAAACTATCTGAACCAAAACACATCGTTTTGGTCTTGATGTATACTAGAACTAGT
GGCGATTACGGTAAAACACCGCTAAAGAATAGTATTAGCGGCGATTCGTGGCTAGCACCGCAAAA
TACCATAAACAAAACGCAACGTTTTGATCTTAATGTATACTAAAATTAGTGGCGCTTACGGTAAA
CCGCCGCTAAAGAATAT
Found at i:67930549 original size:228 final size:229
Alignment explanation
Indices: 67930024--67930571 Score: 561
Period size: 228 Copynumber: 2.4 Consensus size: 229
67930014 AAAATAGCTT
* * * * *
67930024 AACCAAAACGCAGA-G-TTTGGTCTTGAGGTAT-CTTAGAATTACTGGCGTTTATGGGAAAACGC
1 AACCAAAACGCA-ACGTTTTGGTCTTGATGTATACTT-GAATTAGTGGCGATTACGGTAAAACGC
* * ** * * *
67930086 CGTTAAAGGATAGTAATAGCGGCGCTTTACGGAAGCGCCGCAAACTATCTGAACCGAAACACATC
64 CGCTAAAGAATAGTAATAGCGGCGCTTTGTGGAAGCGCCGCAAAATATCTGAACCAAAACACATA
* * * *
67930151 GTTTTGGTCTTGATGTATACTAGAACTAGTGGCGCATACGGTCAAACGCCGCTAAAGAATAGTAT
129 ATTTTGGCCTCGATGTATACTAGAACTAGTGGCACATACGGTCAAACGCCGCTAAAGAATAGTAT
* * *** * *
67930216 TAGCGGCGATTCGTGGCTAGCGCCGCAAAATATATT
194 TAACGACGATTCGTGAAAAGCGCCACAAAATATATG
* * ** * *
67930252 AACCAAAACGCAACGTTTTGATCTTAATGTATA-TAAAATTAGTGGCGCTTACGGTAAACCGCCG
1 AACCAAAACGCAACGTTTTGGTCTTGATGTATACTTGAATTAGTGGCGATTACGGTAAAACGCCG
* * *
67930316 CTAAAGAATATTAATAGCGGCGCTTTGTGAGAAGCGCCGCAAAATATCTTAACCAAAACGCATAA
66 CTAAAGAATAGTAATAGCGGCGCTTTGTG-GAAGCGCCGCAAAATATCTGAACCAAAACACATAA
* * * * * *
67930381 TTTTGGCCTCGATGTATAGTAGAATTAGTGGCACTTA-GG-GAAACGCCGTTAAAGCATAGTATT
130 TTTTGGCCTCGATGTATACTAGAACTAGTGGCACATACGGTCAAACGCCGCTAAAGAATAGTATT
* * * * *
67930444 AACGACGCTTGGAT-AAAAGCGCCACCAATTATCTG
195 AACGACGATTCG-TGAAAAGCGCCACAAAATATATG
* * **
67930479 AACCAAAACGCATCGTTTTGGTCTTGATGTATACTTGATTTAGTGGCGATTACGGTAAAATACCG
1 AACCAAAACGCAACGTTTTGGTCTTGATGTATACTTGAATTAGTGGCGATTACGGTAAAACGCCG
* * *
67930544 CTAAAGCATAGTATTAGCGGCGATTTGT
66 CTAAAGAATAGTAATAGCGGCGCTTTGT
67930572 TGCTAGCACC
Statistics
Matches: 258, Mismatches: 56, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
227 73 0.28
228 111 0.43
229 74 0.29
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (229 bp):
AACCAAAACGCAACGTTTTGGTCTTGATGTATACTTGAATTAGTGGCGATTACGGTAAAACGCCG
CTAAAGAATAGTAATAGCGGCGCTTTGTGGAAGCGCCGCAAAATATCTGAACCAAAACACATAAT
TTTGGCCTCGATGTATACTAGAACTAGTGGCACATACGGTCAAACGCCGCTAAAGAATAGTATTA
ACGACGATTCGTGAAAAGCGCCACAAAATATATG
Found at i:67930637 original size:115 final size:115
Alignment explanation
Indices: 67929967--67930641 Score: 507
Period size: 114 Copynumber: 5.9 Consensus size: 115
67929957 CGTTTATGCG
* * * * * * * * * *
67929967 AAACGCCGTTAAAGGACAGTAATAGCGGTGCTTT-TTGGAAACGCCGCAAAATAGCTTAACCAAA
1 AAACGCCGCTAAAGAATAGTATTAGCGGCGATTTGTTGCAAGCGCCGCAAAATATCATAACCAAA
* * * * * *
67930031 ACGCAGAG-TTTGGTCTTGAGGTAT-CTTAGAATTACTGGCGTTTATGGGA
66 ACGCATAGTTTTGGTCTTGATGTATAC-TAGAATTAGTGGCGATTACGGTA
* * * * ** * * *
67930080 AAACGCCGTTAAAGGATAGTAATAGCGGCGCTTT-ACGGAAGCGCCGCAAACTATC-TGAACCGA
1 AAACGCCGCTAAAGAATAGTATTAGCGGCGATTTGTTGCAAGCGCCGCAAAATATCAT-AACCAA
* * * *
67930143 AACACATCGTTTTGGTCTTGATGTATACTAGAACTAGTGGCGCA-TACGGTC
65 AACGCATAGTTTTGGTCTTGATGTATACTAGAATTAGTGGCG-ATTACGGTA
* * *
67930194 AAACGCCGCTAAAGAATAGTATTAGCGGCGATTCGTGGCTAGCGCCGCAAAATAT-ATTAACCAA
1 AAACGCCGCTAAAGAATAGTATTAGCGGCGATTTGTTGCAAGCGCCGCAAAATATCA-TAACCAA
* * * *
67930258 AACGCA-ACGTTTTGATCTTAATGTATA-TAAAATTAGTGGCGCTTACGGTA
65 AACGCATA-GTTTTGGTCTTGATGTATACTAGAATTAGTGGCGATTACGGTA
* * * * * *
67930308 AACCGCCGCTAAAGAATATTAATAGCGGCGCTTTG-TGAGAAGCGCCGCAAAATATCTTAACCAA
1 AAACGCCGCTAAAGAATAGTATTAGCGGCGATTTGTTG-CAAGCGCCGCAAAATATCATAACCAA
* * * * *
67930372 AACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGC-ACTTA-GG-G
65 AACGCATAGTTTTGGTCTTGATGTATACTAGAATTAGTGGCGA-TTACGGTA
* * * * * * * ** * * *
67930421 AAACGCCGTTAAAGCATAGTATTAACGACGCTTGGATAAAAGCGCCACCAATTATC-TGAACCAA
1 AAACGCCGCTAAAGAATAGTATTAGCGGCGATTTGTTGCAAGCGCCGCAAAATATCAT-AACCAA
* * *
67930485 AACGCATCGTTTTGGTCTTGATGTATACTTGATTTAGTGGCGATTACGGTA
65 AACGCATAGTTTTGGTCTTGATGTATACTAGAATTAGTGGCGATTACGGTA
** * * * * * * *
67930536 AAATACCGCTAAAGCATAGTATTAGCGGCGATTTGTTGCTAGCACCGCGACATACCATAAACAAA
1 AAACGCCGCTAAAGAATAGTATTAGCGGCGATTTGTTGCAAGCGCCGCAAAATATCATAACCAAA
* *
67930601 ACGCAGT-GTTTTGGTCTTGATTTATACTAAAATTAGTGGCG
66 ACGCA-TAGTTTTGGTCTTGATGTATACTAGAATTAGTGGCG
67930642 CTTTGTTGAA
Statistics
Matches: 444, Mismatches: 97, Indels: 40
0.76 0.17 0.07
Matches are distributed among these distances:
112 2 0.00
113 144 0.32
114 156 0.35
115 139 0.31
116 3 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (115 bp):
AAACGCCGCTAAAGAATAGTATTAGCGGCGATTTGTTGCAAGCGCCGCAAAATATCATAACCAAA
ACGCATAGTTTTGGTCTTGATGTATACTAGAATTAGTGGCGATTACGGTA
Found at i:67930819 original size:7 final size:7
Alignment explanation
Indices: 67930809--67930931 Score: 63
Period size: 7 Copynumber: 17.0 Consensus size: 7
67930799 AAAGTTTAAA
67930809 GTTTAGG
1 GTTTAGG
*
67930816 GTTTACG
1 GTTTAGG
* *
67930823 ATGTA-G
1 GTTTAGG
67930829 GTTTAGG
1 GTTTAGG
*
67930836 G-TTAAG
1 GTTTAGG
67930842 GTATTAGAG
1 GT-TTAG-G
67930851 TGTTTAGG
1 -GTTTAGG
67930859 G-TTAGG
1 GTTTAGG
67930865 GTATTAGGG
1 GT-TTA-GG
*
67930874 TGTTTTGG
1 -GTTTAGG
*
67930882 GTTTAAG
1 GTTTAGG
67930889 GTTTAGG
1 GTTTAGG
* *
67930896 AGTCTGGG
1 -GTTTAGG
*
67930904 GTTTAAG
1 GTTTAGG
*
67930911 GTTTAAG
1 GTTTAGG
*
67930918 GTTTGGG
1 GTTTAGG
67930925 GTTTAGG
1 GTTTAGG
67930932 CTACTTTAGT
Statistics
Matches: 87, Mismatches: 19, Indels: 20
0.69 0.15 0.16
Matches are distributed among these distances:
6 15 0.17
7 45 0.52
8 14 0.16
9 9 0.10
10 4 0.05
ACGTcount: A:0.19, C:0.02, G:0.39, T:0.41
Consensus pattern (7 bp):
GTTTAGG
Found at i:67930895 original size:23 final size:23
Alignment explanation
Indices: 67930829--67930895 Score: 91
Period size: 23 Copynumber: 2.9 Consensus size: 23
67930819 TACGATGTAG
*
67930829 GTTTAGGGTTAAGGTATTAGAGT
1 GTTTAGGGTTAAGGTATTAGGGT
*
67930852 GTTTAGGGTTAGGGTATTAGGGT
1 GTTTAGGGTTAAGGTATTAGGGT
*
67930875 GTTTTGGGTTTAAGGT-TTAGG
1 GTTTAGGG-TTAAGGTATTAGG
67930896 AGTCTGGGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
23 33 0.85
24 6 0.15
ACGTcount: A:0.19, C:0.00, G:0.39, T:0.42
Consensus pattern (23 bp):
GTTTAGGGTTAAGGTATTAGGGT
Found at i:67930907 original size:22 final size:21
Alignment explanation
Indices: 67930880--67930929 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 21
67930870 AGGGTGTTTT
*
67930880 GGGTTTAAGGTTTAGGAGTCTG
1 GGGTTTAAGGTTTAAG-GTCTG
*
67930902 GGGTTTAAGGTTTAAGGTTTG
1 GGGTTTAAGGTTTAAGGTCTG
67930923 GGGTTTA
1 GGGTTTA
67930930 GGCTACTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 11 0.42
22 15 0.58
ACGTcount: A:0.18, C:0.02, G:0.40, T:0.40
Consensus pattern (21 bp):
GGGTTTAAGGTTTAAGGTCTG
Done.