Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 227 of 240
Found at i:68200176 original size:21 final size:21
Alignment explanation
Indices: 68200148--68200202 Score: 94
Period size: 21 Copynumber: 2.6 Consensus size: 21
68200138 ACCGCTGTTT
68200148 CTAATCTCACCGCTACAGTATC
1 CTAATCTCACCGCTACAGTA-C
68200170 C-AATCTCACCGCTACAGTAC
1 CTAATCTCACCGCTACAGTAC
68200190 CTAATCTCACCGC
1 CTAATCTCACCGC
68200203 CACCGCTGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
20 2 0.06
21 29 0.91
22 1 0.03
ACGTcount: A:0.27, C:0.40, G:0.09, T:0.24
Consensus pattern (21 bp):
CTAATCTCACCGCTACAGTAC
Found at i:68206311 original size:5 final size:5
Alignment explanation
Indices: 68206301--68206365 Score: 89
Period size: 5 Copynumber: 13.2 Consensus size: 5
68206291 TCTATTTAAT
*
68206301 ATATA ATATA ATACA ATATA ATATA ATATA ATATA ATATA ATAT- ATAATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA AT-ATA
*
68206351 AAATA ATAT- ATATA A
1 ATATA ATATA ATATA A
68206366 AACATAAAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
4 6 0.11
5 46 0.87
6 1 0.02
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (5 bp):
ATATA
Found at i:68211447 original size:7 final size:6
Alignment explanation
Indices: 68211427--68211460 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
68211417 GTTTGTTCTC
68211427 TTTATT TTTATT TTTATT TTT-TCT TTTATT TTTA
1 TTTATT TTTATT TTTATT TTTAT-T TTTATT TTTA
68211461 AAAACTATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
5 1 0.04
6 24 0.92
7 1 0.04
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTATT
Found at i:68212098 original size:22 final size:21
Alignment explanation
Indices: 68212070--68212123 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 21
68212060 TTTAGCATTT
68212070 TTATTATTTAACCTTATTATT-A
1 TTATTATTTAA-C-TATTATTAA
68212092 TTATTATCGTT-ACTATTATTAA
1 TTATTAT--TTAACTATTATTAA
68212114 TTATTATTTA
1 TTATTATTTA
68212124 TTTTATTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
20 2 0.07
21 7 0.25
22 16 0.57
23 1 0.04
24 2 0.07
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.59
Consensus pattern (21 bp):
TTATTATTTAACTATTATTAA
Found at i:68212312 original size:16 final size:16
Alignment explanation
Indices: 68212293--68212333 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
68212283 CACTTTATAA
68212293 TATATACATATATATC
1 TATATACATATATATC
** *
68212309 TATATTTATATATATT
1 TATATACATATATATC
68212325 TATATACAT
1 TATATACAT
68212334 TTTTACGAAT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.51
Consensus pattern (16 bp):
TATATACATATATATC
Found at i:68212324 original size:10 final size:10
Alignment explanation
Indices: 68212275--68212371 Score: 51
Period size: 10 Copynumber: 10.0 Consensus size: 10
68212265 TACACGCATG
*
68212275 TTTATATACA
1 TTTATATATA
68212285 CTTTATA-ATA
1 -TTTATATATA
*
68212295 --TATACATA
1 TTTATATATA
* *
68212303 TATATCTATA
1 TTTATATATA
68212313 TTTATATATA
1 TTTATATATA
*
68212323 TTTATATACA
1 TTTATATATA
* *
68212333 TTTTTACGA-A
1 TTTATA-TATA
*
68212343 TATATATATA
1 TTTATATATA
* *
68212353 CTTATAT-TT
1 TTTATATATA
68212362 TTTATATATA
1 TTTATATATA
68212372 AACTTTATAT
Statistics
Matches: 64, Mismatches: 16, Indels: 13
0.69 0.17 0.14
Matches are distributed among these distances:
7 4 0.06
8 3 0.05
9 8 0.12
10 42 0.66
11 7 0.11
ACGTcount: A:0.39, C:0.07, G:0.01, T:0.53
Consensus pattern (10 bp):
TTTATATATA
Found at i:68212398 original size:16 final size:15
Alignment explanation
Indices: 68212364--68212402 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
68212354 TTATATTTTT
* *
68212364 TATATATAAACTTTA
1 TATACATAAACTGTA
68212379 TATACATAAACGTGTA
1 TATACATAAAC-TGTA
68212395 TATACATA
1 TATACATA
68212403 CTTGCATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.38
Consensus pattern (15 bp):
TATACATAAACTGTA
Found at i:68212678 original size:15 final size:15
Alignment explanation
Indices: 68212658--68212687 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
68212648 ATTATTCGTT
*
68212658 TTTGTTCATATTATC
1 TTTGTTCACATTATC
68212673 TTTGTTCACATTATC
1 TTTGTTCACATTATC
68212688 ATTTTTATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.17, G:0.07, T:0.57
Consensus pattern (15 bp):
TTTGTTCACATTATC
Found at i:68213124 original size:109 final size:110
Alignment explanation
Indices: 68212740--68213167 Score: 569
Period size: 110 Copynumber: 3.9 Consensus size: 110
68212730 AAAGAAAATT
* * * * *
68212740 TTTCTAAATGAGGCAATATTTAGCATTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGT
1 TTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
* * *
68212805 CGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAAT
66 CGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTAAAAAA
* * *
68212850 TTTTAAAATAATGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
1 TTTCAAAATAAGGCAATATTTTGCGTTT-GGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
68212915 TCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTT-AAAAA
65 TCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTAAAAAA
* *
68212960 TTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTTGAGAAAACATG-CCTGAAGGTGTTGGGTG
1 TTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACATGCCCT-AAGGTGCTGGGTG
*
68213024 TCGATTTTTCTCATTCAACCAAATGACTAAATATCCTTTTAAAAAA
65 TCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTAAAAAA
* * * * * * * *
68213070 TTTCAAAATAAGGCAATGTTTTGCGTTTAGAAATTTGAG-GAACGTACCCTAAGGTGCTGGATTT
1 TTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
* * * *
68213134 CGA--TTTCTCGTTTAACCAAATAGCCAAATATCCT
66 CGATTTTTCTCATTCAACCAAATGGCTAAATATCCT
68213168 CTCGAACTTC
Statistics
Matches: 284, Mismatches: 30, Indels: 11
0.87 0.09 0.03
Matches are distributed among these distances:
107 26 0.09
108 3 0.01
109 87 0.31
110 95 0.33
111 73 0.26
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (110 bp):
TTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
CGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTAAAAAA
Found at i:68214529 original size:129 final size:129
Alignment explanation
Indices: 68214306--68214556 Score: 448
Period size: 129 Copynumber: 1.9 Consensus size: 129
68214296 AAGACGATAA
* * *
68214306 TATGATAAAAGGCATTGTCTATGGTTTCTGCTGCAGAAAATTGTTAACTTTCGGGATGATGCCAT
1 TATGATAAAAGGAATTGTCTATGGTTTCTGCTGCAGAAAATTGTTAACTTTCGAGATGACGCCAT
* *
68214371 TATAAAATTTGTTTGCATGAACTAATTAATCCATAGACTTTAATTATGTACTATGTAACGATTG
66 TATAAAATTTGTTTGCATGAACTAATTAATACATAGACTTTAACTATGTACTATGTAACGATTG
*
68214435 TATGATGAAAGGAATTGTCTATGGTTTCTGCTGCAGAAAATTGTTAACTTTCGAGATGACGCCAT
1 TATGATAAAAGGAATTGTCTATGGTTTCTGCTGCAGAAAATTGTTAACTTTCGAGATGACGCCAT
68214500 TATAAAATTTGTTTGCATGAACTAATTAATACATAGACTTTAACTATGTACTATGTA
66 TATAAAATTTGTTTGCATGAACTAATTAATACATAGACTTTAACTATGTACTATGTA
68214557 GGCGTCCTAG
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
129 116 1.00
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (129 bp):
TATGATAAAAGGAATTGTCTATGGTTTCTGCTGCAGAAAATTGTTAACTTTCGAGATGACGCCAT
TATAAAATTTGTTTGCATGAACTAATTAATACATAGACTTTAACTATGTACTATGTAACGATTG
Found at i:68215782 original size:324 final size:324
Alignment explanation
Indices: 68215193--68215787 Score: 1084
Period size: 324 Copynumber: 1.8 Consensus size: 324
68215183 ACAACACCCT
* *
68215193 TCTTGGATCTCAAACTCCAATGCTAGATGCTTCTTGAGACGCCTTATTTAATCTACATCATCTTC
1 TCTTGGATCTCAAACTCCAATGCTAGATGCTCCTTGAGACGCCTTATTTAATCTACATCATCTCC
*
68215258 TGTAAGAATGATATCATTGACATAAACTATAATAATTGTTATTTTACCTTTTTGACAGTGCCGAT
66 TGTAAGAATGATATCATCGACATAAACTATAATAATTGTTATTTTACCTTTTTGACAGTGCCGAT
*
68215323 AGAACATTGTGTGATCAGCTTGCCTTTATGAGTAAGCTTGTTTTTTAACAACTTGAGTGAATCAT
131 AGAACATTGTGTGATCAGCTTGCCTTTATGAGTAACCTTGTTTTTTAACAACTTGAGTGAATCAT
*
68215388 TCAAACCAAGCTCGAAGAGATTGCTTTAGACCATACAAAGATTTCTTGAGCTTACATACTCGAGT
196 TCAAACCAAGCTCGAAGAGATTGATTTAGACCATACAAAGATTTCTTGAGCTTACATACTCGAGT
68215453 TCCAAATTTTTACCTTTTTGACCGAGCAACTTTCATTCCAAGAAAGTATTTCAAAGGACCCAAG
261 TCCAAATTTTTACCTTTTTGACCGAGCAACTTTCATTCCAAGAAAGTATTTCAAAGGACCCAAG
*
68215517 TCTTGGATCTCAAACTCCAATGCTAGATGCTCCTTGAGACGCCTTATTTTATCTACATCATCTCC
1 TCTTGGATCTCAAACTCCAATGCTAGATGCTCCTTGAGACGCCTTATTTAATCTACATCATCTCC
*
68215582 TGTAAGAATGATATCATCGACATAAACTATAATAATTGTTATTTTACCTTTTTGGA-AGTGTCGA
66 TGTAAGAATGATATCATCGACATAAACTATAATAATTGTTATTTTACCTTTTT-GACAGTGCCGA
* *
68215646 TAGAACATTGTGTGATCAGCTTGCCTTTGTGAGTAACCTTGTTTTTTAACAACTTGAGTGAATCG
130 TAGAACATTGTGTGATCAGCTTGCCTTTATGAGTAACCTTGTTTTTTAACAACTTGAGTGAATCA
*
68215711 TTCAAACCAAGCTCGAAGAGGTTGATTTAGACCATACAAAGATTTCTTGAGCTTACATACTCGAG
195 TTCAAACCAAGCTCGAAGAGATTGATTTAGACCATACAAAGATTTCTTGAGCTTACATACTCGAG
68215776 TTCCAAATTTTT
260 TTCCAAATTTTT
68215788 CTTCAAAACC
Statistics
Matches: 260, Mismatches: 10, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
324 258 0.99
325 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (324 bp):
TCTTGGATCTCAAACTCCAATGCTAGATGCTCCTTGAGACGCCTTATTTAATCTACATCATCTCC
TGTAAGAATGATATCATCGACATAAACTATAATAATTGTTATTTTACCTTTTTGACAGTGCCGAT
AGAACATTGTGTGATCAGCTTGCCTTTATGAGTAACCTTGTTTTTTAACAACTTGAGTGAATCAT
TCAAACCAAGCTCGAAGAGATTGATTTAGACCATACAAAGATTTCTTGAGCTTACATACTCGAGT
TCCAAATTTTTACCTTTTTGACCGAGCAACTTTCATTCCAAGAAAGTATTTCAAAGGACCCAAG
Found at i:68230051 original size:14 final size:15
Alignment explanation
Indices: 68230025--68230055 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
68230015 TCCGGGTTCA
68230025 TCAACACATTTTTCT
1 TCAACACATTTTTCT
68230040 TCAACA-ATTTTTCT
1 TCAACACATTTTTCT
68230054 TC
1 TC
68230056 CCATTTCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48
Consensus pattern (15 bp):
TCAACACATTTTTCT
Found at i:68234048 original size:20 final size:18
Alignment explanation
Indices: 68234015--68234058 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
68234005 AACATACATC
68234015 TAATTATTTTTATTTCAT
1 TAATTATTTTTATTTCAT
*
68234033 TAATTATATATTTATTTTAT
1 TAATTAT-T-TTTATTTCAT
68234053 TAATTA
1 TAATTA
68234059 GTGTATTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.30
19 1 0.04
20 15 0.65
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (18 bp):
TAATTATTTTTATTTCAT
Found at i:68234072 original size:20 final size:20
Alignment explanation
Indices: 68234015--68234074 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
68234005 AACATACATC
68234015 TAATTAT-T-TTTAT-TTCAT
1 TAATTATATATTTATATT-AT
*
68234033 TAATTATATATTTATTTTAT
1 TAATTATATATTTATATTAT
*
68234053 TAATTAGTGTATTTA-ATTAT
1 TAATTA-TATATTTATATTAT
68234073 TA
1 TA
68234075 TTTAAAGATA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
18 7 0.19
19 1 0.03
20 19 0.53
21 9 0.25
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (20 bp):
TAATTATATATTTATATTAT
Found at i:68235814 original size:22 final size:24
Alignment explanation
Indices: 68235786--68235829 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
68235776 TATGGCAAGA
68235786 AATTAAG-TAGAAAAG-AAGTATG
1 AATTAAGCTAGAAAAGTAAGTATG
68235808 AATTAAGCTAGAAAAGTAAGTA
1 AATTAAGCTAGAAAAGTAAGTA
68235830 AGCTTAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.35
23 8 0.40
24 5 0.25
ACGTcount: A:0.55, C:0.02, G:0.20, T:0.23
Consensus pattern (24 bp):
AATTAAGCTAGAAAAGTAAGTATG
Found at i:68236214 original size:37 final size:36
Alignment explanation
Indices: 68236154--68236245 Score: 98
Period size: 37 Copynumber: 2.5 Consensus size: 36
68236144 ATATGTGTGG
* *
68236154 AATTGAAATGAATAT-TGACTTGAAAATGGAAAAGTGA
1 AATTGAATTGAA-ATGTGA-TTGAAAATGAAAAAGTGA
* *
68236191 ATTTTGAATT-AAATTGTGATTGAAAGTGAAAAAGTGA
1 A-ATTGAATTGAAA-TGTGATTGAAAATGAAAAAGTGA
68236228 AATTGAATTGAAATGTGA
1 AATTGAATTGAAATGTGA
68236246 ATTTGGAGAC
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
36 13 0.28
37 24 0.52
38 9 0.20
ACGTcount: A:0.46, C:0.01, G:0.22, T:0.32
Consensus pattern (36 bp):
AATTGAATTGAAATGTGATTGAAAATGAAAAAGTGA
Found at i:68236437 original size:37 final size:38
Alignment explanation
Indices: 68236336--68236446 Score: 91
Period size: 37 Copynumber: 2.8 Consensus size: 38
68236326 CGACCTCGAG
*
68236336 TCGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGAT
1 TCGATGAGACACTGGGTGTCA--A-CTTTCTTCGGATAGAT
** ** * *
68236377 TCGATGAGGTACTGGGTACCAACTTTCTTCGGCTTTGA-
1 TCGATGAGACACTGGGTGTCAACTTTCTTCGG-ATAGAT
68236415 T-GATGAGACACTGGGTGTCAACTATTGCTTCG
1 TCGATGAGACACTGGGTGTCAACT-TT-CTTCG
68236447 AACTATCCGA
Statistics
Matches: 56, Mismatches: 11, Indels: 8
0.75 0.15 0.11
Matches are distributed among these distances:
37 18 0.32
38 12 0.21
39 9 0.16
41 17 0.30
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (38 bp):
TCGATGAGACACTGGGTGTCAACTTTCTTCGGATAGAT
Found at i:68238527 original size:26 final size:26
Alignment explanation
Indices: 68238497--68238559 Score: 63
Period size: 32 Copynumber: 2.2 Consensus size: 26
68238487 TAAGAAGGAC
68238497 AGTTCTAAATGTATTAACATCTGTTA
1 AGTTCTAAATGTATTAACATCTGTTA
*
68238523 AGTTCCCACACTAAATGTATTGACATCTGTTA
1 AGTT------CTAAATGTATTAACATCTGTTA
68238555 AGTTC
1 AGTTC
68238560 CTGCAGGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 12
0.70 0.02 0.28
Matches are distributed among these distances:
26 5 0.17
32 25 0.83
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (26 bp):
AGTTCTAAATGTATTAACATCTGTTA
Found at i:68244570 original size:22 final size:24
Alignment explanation
Indices: 68244545--68244588 Score: 56
Period size: 22 Copynumber: 1.9 Consensus size: 24
68244535 CAAGCACTGC
*
68244545 AAAAGGGCTGG-TC-ATCCAGAAG
1 AAAAAGGCTGGTTCAATCCAGAAG
*
68244567 AAAAATGCTGGTTCAATCCAGA
1 AAAAAGGCTGGTTCAATCCAGA
68244589 TGCTGTATGC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 9 0.50
23 2 0.11
24 7 0.39
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (24 bp):
AAAAAGGCTGGTTCAATCCAGAAG
Found at i:68252536 original size:21 final size:21
Alignment explanation
Indices: 68252504--68252544 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
68252494 GAACATTTGG
68252504 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
68252525 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
68252545 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:68256287 original size:20 final size:18
Alignment explanation
Indices: 68256254--68256297 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
68256244 AACATACATC
68256254 TAATTATTTTTATTTCAT
1 TAATTATTTTTATTTCAT
*
68256272 TAATTATATATTTATTTTAT
1 TAATTAT-T-TTTATTTCAT
68256292 TAATTA
1 TAATTA
68256298 GTGTATTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.30
19 1 0.04
20 15 0.65
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (18 bp):
TAATTATTTTTATTTCAT
Found at i:68256311 original size:20 final size:20
Alignment explanation
Indices: 68256254--68256313 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
68256244 AACATACATC
68256254 TAATTAT-T-TTTAT-TTCAT
1 TAATTATATATTTATATT-AT
*
68256272 TAATTATATATTTATTTTAT
1 TAATTATATATTTATATTAT
*
68256292 TAATTAGTGTATTTA-ATTAT
1 TAATTA-TATATTTATATTAT
68256312 TA
1 TA
68256314 TTTAAAGATA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
18 7 0.19
19 1 0.03
20 19 0.53
21 9 0.25
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (20 bp):
TAATTATATATTTATATTAT
Found at i:68256514 original size:45 final size:44
Alignment explanation
Indices: 68256462--68256559 Score: 144
Period size: 44 Copynumber: 2.2 Consensus size: 44
68256452 TTTGGTTCGC
68256462 TGTAATGGAATAGAGGCGTAATAGCAATTCAAT-TGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAG-AATTC-ATGTGTTTGGTTGAA
* *
68256507 TGTAATGGAATAGAGGCGTAATAGTATTCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAATTCATGTGTTTGGTTGAA
*
68256551 TGGAATGGA
1 TGTAATGGA
68256560 GGTGTAATAG
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
43 1 0.02
44 24 0.49
45 24 0.49
ACGTcount: A:0.31, C:0.05, G:0.30, T:0.35
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGAATTCATGTGTTTGGTTGAA
Found at i:68256737 original size:18 final size:17
Alignment explanation
Indices: 68256716--68256750 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
68256706 TTATTATTAA
*
68256716 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
68256734 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
68256751 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:68256796 original size:61 final size:61
Alignment explanation
Indices: 68256725--68256921 Score: 206
Period size: 61 Copynumber: 3.3 Consensus size: 61
68256715 AATATATTTT
* *
68256725 AATTAAAATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTAA
1 AATTATAATATATGATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTAA
* * * * * * * * * **
68256786 AATCATAATATATGATACT-ATAAAA-T-ATAAT-TTGAAATAATTATTAT-TAAATATATTTT
1 AATTATAATATATGAT-TTAATAAAATTCTTAATAAT-CAAT-ATTCTTATATGAATTTACTAA
*
68256845 AATTAAAATATATGATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTAA
1 AATTATAATATATGATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTAA
68256906 AATTATAATATATGAT
1 AATTATAATATATGAT
68256922 ACTATAAAAT
Statistics
Matches: 102, Mismatches: 26, Indels: 16
0.71 0.18 0.11
Matches are distributed among these distances:
58 2 0.02
59 34 0.33
60 16 0.16
61 48 0.47
62 2 0.02
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (61 bp):
AATTATAATATATGATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTAA
Found at i:68256857 original size:18 final size:17
Alignment explanation
Indices: 68256834--68256870 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
68256824 AATTATTATT
68256834 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
68256850 AAATATATGATTTAATA
1 AAATATATGATTTAATA
68256867 AAAT
1 AAAT
68256871 TCTTAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:68256977 original size:18 final size:17
Alignment explanation
Indices: 68256954--68256990 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
68256944 AATTATTATT
68256954 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
68256970 AAATATATGATTTAATA
1 AAATATATGATTTAATA
68256987 AAAT
1 AAAT
68256991 TTAAAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:68256988 original size:59 final size:60
Alignment explanation
Indices: 68256702--68256990 Score: 234
Period size: 59 Copynumber: 4.8 Consensus size: 60
68256692 ATATTTTAAC
* * *
68256702 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCA
1 ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAA-TCATAATAATAA
* * * * ** * * * *
68256763 AT-ATTCTTATATGAATTTACTAAAATCATAATATATGATACT-ATAAAAT-ATAAT-TTGAA
1 ATAATTATTAT-TAAATATATTTTAATTAAAATATATGAT-TTAATAAAATCATAATAAT-AA
* *
68256822 ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAATCA
1 ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAA-TCATAATAATAA
* * * * ** * * *
68256883 AT-ATTCTTATATGAATTTACTAAAATTATAATATATGATACT-ATAAAAT-ATAAT-TTGAA
1 ATAATTATTAT-TAAATATATTTTAATTAAAATATATGAT-TTAATAAAATCATAATAAT-AA
68256942 ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAAT
68256991 TTAAAATAAT
Statistics
Matches: 171, Mismatches: 44, Indels: 28
0.70 0.18 0.12
Matches are distributed among these distances:
58 4 0.02
59 70 0.41
60 31 0.18
61 63 0.37
62 3 0.02
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (60 bp):
ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATCATAATAATAA
Found at i:68257000 original size:120 final size:120
Alignment explanation
Indices: 68256702--68256991 Score: 562
Period size: 120 Copynumber: 2.4 Consensus size: 120
68256692 ATATTTTAAC
*
68256702 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAATCAATAT
68256767 TCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAATTTGAA
66 TCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAATTTGAA
68256822 ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAATCAATAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAATCAATAT
*
68256887 TCTTATATGAATTTACTAAAATTATAATATATGATACTATAAAATATAATTTGAA
66 TCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAATTTGAA
68256942 ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
68256992 TAAAATAATT
Statistics
Matches: 168, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 168 1.00
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (120 bp):
ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAATCAATAT
TCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAATTTGAA
Found at i:68257092 original size:88 final size:89
Alignment explanation
Indices: 68256998--68257209 Score: 329
Period size: 88 Copynumber: 2.4 Consensus size: 89
68256988 AATTTAAAAT
* *
68256998 AATTATTACTAATAAATTTTCTTATATGAATTTTTATAATTTAAAATAATTATTATTAAATATAA
1 AATTATTA-TAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTAATATTAAATATAA
68257063 TTTAA-CA-ATATATAATTTCATAA
65 TTTAATCAGATATATAATTTCATAA
68257086 AATTATTGATAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTAATATTAAATATAA
1 AATTATT-ATAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTAATATTAAATATAA
*
68257151 TTTAATGATGATATATAATTTCATAA
65 TTTAATCA-GATATATAATTTCATAA
* *
68257177 AATTCTTAATAATAAATATTCTTATATGAATTT
1 AATTATT-ATAATAAATTTTCTTATATGAATTT
68257210 ACTAAACCAT
Statistics
Matches: 114, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
88 66 0.58
89 2 0.02
91 46 0.40
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (89 bp):
AATTATTATAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTAATATTAAATATAAT
TTAATCAGATATATAATTTCATAA
Found at i:68257131 original size:44 final size:44
Alignment explanation
Indices: 68256973--68257146 Score: 124
Period size: 44 Copynumber: 3.9 Consensus size: 44
68256963 TTAATTAAAA
*
68256973 TATATG-ATTTAATAAAATTTAAAATAATTATTACTAATAAATTTTCT
1 TATATGAATTT-ATATAATTTAAAAT-A--ATTACTAATAAATTTTCT
* * * * **
68257020 TATATGAATTTTTATAATTTAAAATAATTATTATTAAATATAAT
1 TATATGAATTTATATAATTTAAAATAATTACTAATAAATTTTCT
** *
68257064 T-TAACAA--TATATAATTTCATAAAATTATTGA-TAATAAATTTTCT
1 TATATGAATTTATATAA-TT--TAAAATAATT-ACTAATAAATTTTCT
* * *
68257108 TATATGAATTTGTATAATTTAAAATAATTAATATTAAAT
1 TATATGAATTTATATAATTTAAAATAATTACTAATAAAT
68257147 ATAATTTAAT
Statistics
Matches: 98, Mismatches: 20, Indels: 21
0.71 0.14 0.15
Matches are distributed among these distances:
41 6 0.06
42 2 0.02
43 5 0.05
44 49 0.50
45 5 0.05
46 3 0.03
47 24 0.24
48 4 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (44 bp):
TATATGAATTTATATAATTTAAAATAATTACTAATAAATTTTCT
Found at i:68257137 original size:47 final size:46
Alignment explanation
Indices: 68256973--68257210 Score: 169
Period size: 47 Copynumber: 5.3 Consensus size: 46
68256963 TTAATTAAAA
*
68256973 TATATG-ATTTAATAAAATTTAAAATAATTATTACTAATAAATTTTCT
1 TATATGAATTT-ATATAATTTAAAATAATTATTA-TAATAAATTTTCT
* * **
68257020 TATATGAATTTTTATAATTTAAAATAATTATTAT--TAAATATAAT
1 TATATGAATTTATATAATTTAAAATAATTATTATAATAAATTTTCT
** *
68257064 T-TAACAA--TATATAATTTCATAA-AATTATTGATAATAAATTTTCT
1 TATATGAATTTATATAATTT-AAAATAATTATT-ATAATAAATTTTCT
* * *
68257108 TATATGAATTTGTATAATTTAAAATAATTA--ATATTAAATATAAT-T
1 TATATGAATTTATATAATTTAAAATAATTATTATAATAAAT-T-TTCT
* * * *
68257153 TA-ATG-ATGATATATAATTTCATAA-AATTCTTAATAATAAATATTCT
1 TATATGAAT-TTATATAATTT-AAAATAATTATT-ATAATAAATTTTCT
68257199 TATATGAATTTA
1 TATATGAATTTA
68257211 CTAAACCATA
Statistics
Matches: 146, Mismatches: 26, Indels: 38
0.70 0.12 0.18
Matches are distributed among these distances:
41 16 0.11
42 5 0.03
43 6 0.04
44 40 0.27
45 12 0.08
46 8 0.05
47 53 0.36
48 6 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (46 bp):
TATATGAATTTATATAATTTAAAATAATTATTATAATAAATTTTCT
Found at i:68257168 original size:44 final size:43
Alignment explanation
Indices: 68257032--68257171 Score: 117
Period size: 44 Copynumber: 3.2 Consensus size: 43
68257022 TATGAATTTT
* *
68257032 TATAATTTAAAATAATTATTATTAAATATAATTTAA-CA-ATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATGATATA
* * * * * *
68257073 TATAATTTCATAAAATTATTGATAATAAAT-T-TTCTTATATGAATTTG
1 TATAA-TT--TAAAATAATTAATATTAAATATAAT-TTA-ATG-ATATA
68257120 TATAATTTAAAATAATTAATATTAAATATAATTTAATGATGATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATGAT-ATA
68257164 TATAATTT
1 TATAATTT
68257172 CATAAAATTC
Statistics
Matches: 74, Mismatches: 14, Indels: 19
0.69 0.13 0.18
Matches are distributed among these distances:
41 5 0.07
42 3 0.04
43 6 0.08
44 46 0.62
45 4 0.05
46 4 0.05
47 6 0.08
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (43 bp):
TATAATTTAAAATAATTAATATTAAATATAATTTAATGATATA
Found at i:68262323 original size:14 final size:15
Alignment explanation
Indices: 68262297--68262327 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
68262287 TCCGGGTTCA
68262297 TCAACACATTTTTCT
1 TCAACACATTTTTCT
68262312 TCAACA-ATTTTTCT
1 TCAACACATTTTTCT
68262326 TC
1 TC
68262328 CCATTTCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48
Consensus pattern (15 bp):
TCAACACATTTTTCT
Found at i:68263341 original size:52 final size:53
Alignment explanation
Indices: 68263246--68263351 Score: 135
Period size: 52 Copynumber: 2.0 Consensus size: 53
68263236 TCTAGATATG
* * *
68263246 TATATAAAGGGATTACATCAGTTTCAACTGAATAAGTTTATTTGAACAGACTT
1 TATATAAAGGGATTACATCAGTTTCAACAGAATAAATTGATTTGAACAGACTT
** *
68263299 TATA-AAAGGGATTACATCAGTTTCGGTCAG-ATAAATTGATTTGAATAGACTT
1 TATATAAAGGGATTACATCAGTTTC-AACAGAATAAATTGATTTGAACAGACTT
68263351 T
1 T
68263352 TATGCATTCC
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
52 40 0.87
53 6 0.13
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.36
Consensus pattern (53 bp):
TATATAAAGGGATTACATCAGTTTCAACAGAATAAATTGATTTGAACAGACTT
Found at i:68268262 original size:18 final size:18
Alignment explanation
Indices: 68268235--68268327 Score: 141
Period size: 18 Copynumber: 5.2 Consensus size: 18
68268225 TACGACCGTT
68268235 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
68268253 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
68268271 TACAGTACTATTCACGTA
1 TACGGTACTATTCACGTA
**
68268289 TACGACACTATTCACGTA
1 TACGGTACTATTCACGTA
*
68268307 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
68268325 TAC
1 TAC
68268328 AGTAGTTGGG
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 66 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:68274366 original size:14 final size:15
Alignment explanation
Indices: 68274340--68274370 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
68274330 TCCGAGTTCA
68274340 TCAACACATTTTTCT
1 TCAACACATTTTTCT
68274355 TCAACA-ATTTTTCT
1 TCAACACATTTTTCT
68274369 TC
1 TC
68274371 CTATTTCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48
Consensus pattern (15 bp):
TCAACACATTTTTCT
Found at i:68275085 original size:17 final size:17
Alignment explanation
Indices: 68275063--68275102 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
68275053 AAAGATTTGG
68275063 AAAGAAGTTGTTTCTGT
1 AAAGAAGTTGTTTCTGT
68275080 AAAGAAGTTGTTTCTGT
1 AAAGAAGTTGTTTCTGT
68275097 AAAGAA
1 AAAGAA
68275103 ACAAGTCCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.38, C:0.05, G:0.23, T:0.35
Consensus pattern (17 bp):
AAAGAAGTTGTTTCTGT
Found at i:68276411 original size:24 final size:24
Alignment explanation
Indices: 68276384--68276434 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
68276374 TAATTCAGCA
68276384 GTAAGAAAATAATAAATACTCGTT
1 GTAAGAAAATAATAAATACTCGTT
68276408 GTAAGAAAATAATAAATACTCGTT
1 GTAAGAAAATAATAAATACTCGTT
68276432 GTA
1 GTA
68276435 GATGATGAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.49, C:0.08, G:0.14, T:0.29
Consensus pattern (24 bp):
GTAAGAAAATAATAAATACTCGTT
Found at i:68278872 original size:3 final size:3
Alignment explanation
Indices: 68278864--68278904 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
68278854 ACATAGATAG
68278864 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
68278905 CATCAAATTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:68281193 original size:132 final size:132
Alignment explanation
Indices: 68280951--68281351 Score: 712
Period size: 132 Copynumber: 3.0 Consensus size: 132
68280941 ATGTGTTTTG
*
68280951 ACTACTGCTTAGGGGGATAGGACTAATGGCTTAAATCTACTTCTCCATTGTCTTGGGAAGATAAG
1 ACTACTGCTTAGGGGGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTCTTGGGAAGATAAG
* * *
68281016 ATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGGCAGAATCTGTAATCTTCGACCTATT
66 ATTCACCATCTTCAATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCGACCTATT
68281081 CC
131 CC
* *
68281083 ACTACTGCTTAGGGGGATAAGACTAATGGCTTAAATTTACTTCTCCACTGTCTTGGGAAGATAAG
1 ACTACTGCTTAGGGGGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTCTTGGGAAGATAAG
* *
68281148 ATTCACCATCTTCAATCTGCTCCATTACTGCTTAGGGTGATAGAATCTGCAATCTTCGACCTATT
66 ATTCACCATCTTCAATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCGACCTATT
68281213 CC
131 CC
*
68281215 ACTACTGCTTAGGGGGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTCTTGGGAAGATAAG
1 ACTACTGCTTAGGGGGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTCTTGGGAAGATAAG
*
68281280 ATTCACCATCTTCAATCTGCTCCACTACTGCTTAGGGTGACAGAATCTACAATCTTCGACCTATT
66 ATTCACCATCTTCAATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCGACCTATT
68281345 CC
131 CC
68281347 ACTAC
1 ACTAC
68281352 AGGACTTGCT
Statistics
Matches: 255, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 255 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (132 bp):
ACTACTGCTTAGGGGGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTCTTGGGAAGATAAG
ATTCACCATCTTCAATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCGACCTATT
CC
Found at i:68282683 original size:12 final size:11
Alignment explanation
Indices: 68282666--68282727 Score: 54
Period size: 12 Copynumber: 5.4 Consensus size: 11
68282656 TTGGCCTCTC
68282666 CTTTTTCCTTTT
1 CTTTTT-CTTTT
*
68282678 CTTTTT-TCTT
1 CTTTTTCTTTT
68282688 CTTTTTCTTTTT
1 CTTTTTC-TTTT
*
68282700 CTTTTTTTTCTCT
1 CTTTTTCTT-T-T
*
68282713 CTTTTTATTTT
1 CTTTTTCTTTT
68282724 CTTT
1 CTTT
68282728 CTTTTTAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
10 9 0.21
11 7 0.17
12 17 0.40
13 9 0.21
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (11 bp):
CTTTTTCTTTT
Found at i:68282694 original size:9 final size:8
Alignment explanation
Indices: 68282674--68282733 Score: 52
Period size: 9 Copynumber: 7.2 Consensus size: 8
68282664 TCCTTTTTCC
68282674 TTTTC-TT
1 TTTTCTTT
68282681 TTTTCTTCT
1 TTTTCTT-T
68282690 TTTTCTTT
1 TTTTCTTT
68282698 TTCTT-TTT
1 TT-TTCTTT
*
68282706 TTTCTCTCT
1 TTT-TCTTT
*
68282715 TTTTATTT
1 TTTTCTTT
68282723 TCTTTCTTT
1 T-TTTCTTT
68282732 TT
1 TT
68282734 AAAAATTTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
7 6 0.14
8 15 0.35
9 22 0.51
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.82
Consensus pattern (8 bp):
TTTTCTTT
Found at i:68282695 original size:16 final size:16
Alignment explanation
Indices: 68282674--68282710 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
68282664 TCCTTTTTCC
68282674 TTTTCTTTTTTCTTCT
1 TTTTCTTTTTTCTTCT
*
68282690 TTTTC-TTTTTCTTTT
1 TTTTCTTTTTTCTTCT
68282705 TTTTCT
1 TTTTCT
68282711 CTCTTTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTCTTTTTTCTTCT
Found at i:68282717 original size:24 final size:22
Alignment explanation
Indices: 68282666--68282733 Score: 75
Period size: 22 Copynumber: 3.0 Consensus size: 22
68282656 TTGGCCTCTC
* *
68282666 CTTTTTCCTTTTCTTTTTTCTT
1 CTTTTTCTTTTTCTTTTTTTTT
68282688 CTTTTTCTTTTTCTTTTTTTTCT
1 CTTTTTCTTTTTCTTTTTTTT-T
*
68282711 CTCTTTT-TATTTTCTTTCTTTTT
1 CT-TTTTCT-TTTTCTTTTTTTTT
68282734 AAAAATTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
22 19 0.47
23 5 0.12
24 16 0.40
ACGTcount: A:0.01, C:0.19, G:0.00, T:0.79
Consensus pattern (22 bp):
CTTTTTCTTTTTCTTTTTTTTT
Found at i:68282723 original size:15 final size:15
Alignment explanation
Indices: 68282701--68282734 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
68282691 TTTCTTTTTC
68282701 TTTT-TTTTCTCTCT
1 TTTTATTTTCTCTCT
*
68282715 TTTTATTTTCTTTCT
1 TTTTATTTTCTCTCT
68282730 TTTTA
1 TTTTA
68282735 AAAATTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTATTTTCTCTCT
Found at i:68294233 original size:17 final size:17
Alignment explanation
Indices: 68294200--68294233 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
68294190 TTTAATTAAT
68294200 TAAATTATTAAAAATTA
1 TAAATTATTAAAAATTA
68294217 TAAA-TATTAAAATATTA
1 TAAATTATTAAAA-ATTA
68294234 CATAATAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TAAATTATTAAAAATTA
Found at i:68298074 original size:21 final size:21
Alignment explanation
Indices: 68298048--68298087 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
68298038 TTATTAAATG
68298048 TGTCGTATTTATATCAAGGAT
1 TGTCGTATTTATATCAAGGAT
68298069 TGTCGTATTTATATCAAGG
1 TGTCGTATTTATATCAAGG
68298088 GTTTTATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.42
Consensus pattern (21 bp):
TGTCGTATTTATATCAAGGAT
Found at i:68298834 original size:109 final size:109
Alignment explanation
Indices: 68298643--68298862 Score: 431
Period size: 109 Copynumber: 2.0 Consensus size: 109
68298633 TCTTGGTTTC
68298643 ACATTTATCCTTCAAGGATAATGGATATAATAATTAACGCGAGAAATAACGAAGAAAAAGGTGGT
1 ACATTTATCCTTCAAGGATAATGGATATAATAATTAACGCGAGAAATAACGAAGAAAAAGGTGGT
*
68298708 CCTTTGTTATGGGTCGTCGATCAAAATTAAGGAAACTGGAATCG
66 CCTTTCTTATGGGTCGTCGATCAAAATTAAGGAAACTGGAATCG
68298752 ACATTTATCCTTCAAGGATAATGGATATAATAATTAACGCGAGAAATAACGAAGAAAAAGGTGGT
1 ACATTTATCCTTCAAGGATAATGGATATAATAATTAACGCGAGAAATAACGAAGAAAAAGGTGGT
68298817 CCTTTCTTATGGGTCGTCGATCAAAATTAAGGAAACTGGAATCG
66 CCTTTCTTATGGGTCGTCGATCAAAATTAAGGAAACTGGAATCG
68298861 AC
1 AC
68298863 CTCTTGAGGA
Statistics
Matches: 110, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
109 110 1.00
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (109 bp):
ACATTTATCCTTCAAGGATAATGGATATAATAATTAACGCGAGAAATAACGAAGAAAAAGGTGGT
CCTTTCTTATGGGTCGTCGATCAAAATTAAGGAAACTGGAATCG
Found at i:68305188 original size:3 final size:3
Alignment explanation
Indices: 68305180--68305221 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
68305170 TTGTTTTCTA
68305180 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
68305222 TTAAAACATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:68308299 original size:3 final size:3
Alignment explanation
Indices: 68308293--68308321 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
68308283 AATTAACCTC
68308293 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
68308322 CTAGTTCAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:68309809 original size:14 final size:15
Alignment explanation
Indices: 68309783--68309813 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
68309773 TCCAGGTTCA
68309783 TCAACACATTTTTCT
1 TCAACACATTTTTCT
68309798 TCAACA-ATTTTTCT
1 TCAACACATTTTTCT
68309812 TC
1 TC
68309814 CCATTTCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48
Consensus pattern (15 bp):
TCAACACATTTTTCT
Found at i:68316842 original size:9 final size:9
Alignment explanation
Indices: 68316830--68316914 Score: 50
Period size: 9 Copynumber: 9.0 Consensus size: 9
68316820 ATAAAAGTTA
68316830 TAAAAAAAT
1 TAAAAAAAT
*
68316839 TAAAACAA-
1 TAAAAAAAT
68316847 T-AAAAAAT
1 TAAAAAAAT
*
68316855 TCAAAAAAT
1 TAAAAAAAT
*
68316864 ATATAAAAA-
1 -TAAAAAAAT
*
68316873 TAAGTAAGAAT
1 TAA--AAAAAT
68316884 TCAAAAAAATT
1 T-AAAAAAA-T
68316895 ATATAAAAAAT
1 -TA-AAAAAAT
68316906 TAAAAAAAT
1 TAAAAAAAT
68316915 GATGAGAGAT
Statistics
Matches: 59, Mismatches: 7, Indels: 20
0.69 0.08 0.23
Matches are distributed among these distances:
7 5 0.08
8 4 0.07
9 21 0.36
10 16 0.27
11 4 0.07
12 9 0.15
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.24
Consensus pattern (9 bp):
TAAAAAAAT
Found at i:68316853 original size:16 final size:16
Alignment explanation
Indices: 68316832--68316864 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
68316822 AAAAGTTATA
68316832 AAAAAATT-AAAACAAT
1 AAAAAATTCAAAA-AAT
68316848 AAAAAATTCAAAAAAT
1 AAAAAATTCAAAAAAT
68316864 A
1 A
68316865 TATAAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAAAATTCAAAAAAT
Found at i:68323729 original size:21 final size:21
Alignment explanation
Indices: 68323703--68323743 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
68323693 ATCTGCTCAA
* *
68323703 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
68323724 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
68323744 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:68328394 original size:14 final size:15
Alignment explanation
Indices: 68328368--68328398 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
68328358 TCCAGGTTCA
68328368 TCAACACATTTTTCT
1 TCAACACATTTTTCT
68328383 TCAACA-ATTTTTCT
1 TCAACACATTTTTCT
68328397 TC
1 TC
68328399 CCATTTCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48
Consensus pattern (15 bp):
TCAACACATTTTTCT
Found at i:68332945 original size:91 final size:90
Alignment explanation
Indices: 68332786--68332965 Score: 288
Period size: 91 Copynumber: 2.0 Consensus size: 90
68332776 TAGAAACGCC
* *
68332786 GCTATAGGTAGAGTATTAGCGGCGATTCCGAAAAAGCGCCGCAAAAATGTTAATCAGTACGCATC
1 GCTATAGGTAGAGTATTAGCGGCGATTCCAAAAAAGCGCCACAAAAATGTTAATCAGTACGCATC
68332851 GTTTTACTTTAGCTTCTAGTCGAAA
66 GTTTTACTTTAGCTTCTAGTCGAAA
* * * **
68332876 GCTATATGTGGAGTATTAGCGGCGCTTGTAAAAAAGCGCCACAAAAAATGTTAATCAGTACGCAT
1 GCTATAGGTAGAGTATTAGCGGCGATTCCAAAAAAGCGCCAC-AAAAATGTTAATCAGTACGCAT
68332941 CGTTTTACTTTAGCTTCTAGTCGAA
65 CGTTTTACTTTAGCTTCTAGTCGAA
68332966 CTATCGGCAC
Statistics
Matches: 82, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
90 35 0.43
91 47 0.57
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (90 bp):
GCTATAGGTAGAGTATTAGCGGCGATTCCAAAAAAGCGCCACAAAAATGTTAATCAGTACGCATC
GTTTTACTTTAGCTTCTAGTCGAAA
Found at i:68336265 original size:87 final size:87
Alignment explanation
Indices: 68336116--68336286 Score: 265
Period size: 87 Copynumber: 2.0 Consensus size: 87
68336106 TTTTTTCAGC
* *
68336116 AGTGTTAATGCATTCATATTCTCGGCCAATTTGAAGCAGTTAATGGCTTTAAAGGAACCCGAA-C
1 AGTGTTAATGCATTCATATTCTCAGCCAATTTGAAGCAGTTAATGGCTCTAAAGGAACCCGAATC
68336180 CTGA-TAAATTGCATACTTCACGT
66 C--ACTAAATTGCATACTTCACGT
* * *
68336203 AGTGTTAATGCATTGATATTCTCAGCCAATTTGAAGCAGTTAATGGCTCTAAAGGCAGCCGAATC
1 AGTGTTAATGCATTCATATTCTCAGCCAATTTGAAGCAGTTAATGGCTCTAAAGGAACCCGAATC
68336268 CACTAAATTGCATACTTCA
66 CACTAAATTGCATACTTCA
68336287 AGTGAAGAAC
Statistics
Matches: 77, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
86 1 0.01
87 74 0.96
88 2 0.03
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (87 bp):
AGTGTTAATGCATTCATATTCTCAGCCAATTTGAAGCAGTTAATGGCTCTAAAGGAACCCGAATC
CACTAAATTGCATACTTCACGT
Found at i:68338338 original size:14 final size:15
Alignment explanation
Indices: 68338312--68338342 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
68338302 TCCAGGTTCA
68338312 TCAACACATTTTTCT
1 TCAACACATTTTTCT
68338327 TCAACA-ATTTTTCT
1 TCAACACATTTTTCT
68338341 TC
1 TC
68338343 CCATTTTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48
Consensus pattern (15 bp):
TCAACACATTTTTCT
Found at i:68351418 original size:8 final size:8
Alignment explanation
Indices: 68351407--68351432 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
68351397 ATTTATTTAT
68351407 TTTTAAAA
1 TTTTAAAA
68351415 TTTTAAAA
1 TTTTAAAA
68351423 TTTTAAAA
1 TTTTAAAA
68351431 TT
1 TT
68351433 CAGATTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (8 bp):
TTTTAAAA
Found at i:68356290 original size:14 final size:15
Alignment explanation
Indices: 68356266--68356294 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
68356256 CAGGTTCATT
68356266 AACACATTTTTCTTC
1 AACACATTTTTCTTC
68356281 AACA-ATTTTTCTTC
1 AACACATTTTTCTTC
68356295 CCATTTCTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.24, G:0.00, T:0.48
Consensus pattern (15 bp):
AACACATTTTTCTTC
Found at i:68366832 original size:19 final size:18
Alignment explanation
Indices: 68366784--68366834 Score: 52
Period size: 20 Copynumber: 2.8 Consensus size: 18
68366774 AACTAAAAAA
68366784 TAAAAAATTTA-AAATCT
1 TAAAAAATTTATAAATCT
*
68366801 TATAAAATCTTATAGAAGT-T
1 TAAAAAAT-TTATA-AA-TCT
68366821 TAAAAAATTTATAA
1 TAAAAAATTTATAA
68366835 TTAAAATATA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
17 7 0.25
18 4 0.14
19 6 0.21
20 10 0.36
21 1 0.04
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.37
Consensus pattern (18 bp):
TAAAAAATTTATAAATCT
Found at i:68368916 original size:12 final size:12
Alignment explanation
Indices: 68368896--68368942 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
68368886 CTATGTCTTA
* *
68368896 TTATTTTATCAT
1 TTATGTTATTAT
68368908 TTATGTTATTAT
1 TTATGTTATTAT
68368920 TTATGTTTTATTAT
1 TTATG--TTATTAT
68368934 TTATGTTAT
1 TTATGTTAT
68368943 GTTCATTCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
12 19 0.61
14 12 0.39
ACGTcount: A:0.23, C:0.02, G:0.06, T:0.68
Consensus pattern (12 bp):
TTATGTTATTAT
Found at i:68368928 original size:26 final size:29
Alignment explanation
Indices: 68368899--68368965 Score: 95
Period size: 26 Copynumber: 2.4 Consensus size: 29
68368889 TGTCTTATTA
*
68368899 TTTTATCATTTATGTTA-TT-ATT-TATG
1 TTTTATTATTTATGTTAGTTCATTCTATG
68368925 TTTTATTATTTATGTTATGTTCATTCTATG
1 TTTTATTATTTATGTTA-GTTCATTCTATG
68368955 TTTTATTATTT
1 TTTTATTATTT
68368966 TATTTAATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
26 16 0.44
28 2 0.06
29 3 0.08
30 15 0.42
ACGTcount: A:0.21, C:0.04, G:0.07, T:0.67
Consensus pattern (29 bp):
TTTTATTATTTATGTTAGTTCATTCTATG
Found at i:68369633 original size:160 final size:159
Alignment explanation
Indices: 68369131--68369670 Score: 811
Period size: 158 Copynumber: 3.4 Consensus size: 159
68369121 TAAAAAAATG
** * *
68369131 AAAATAGTATATTTACTGAAAGTAATAAAATTCGAAAA-AA-AAAAATTACGAACAAAGGGTCAA
1 AAAATAGTATATTTTTTGAAAGTAATAAAATCCGAAAATAAGAAAAA-TACGAACAAAGGGCCAA
* * * * * * * *
68369194 AATAAAGGTTTTTTACTAAA-TT-TATAATAAAACACACTAAAATAATATATTTTAGACATTATG
65 AATAAGGGGTTTTTACTAAATTTATATAAAAAAACACACTAAATTAATACATTTCAAACTTTATG
*
68369257 TACTAAAATAATATAAAATAATAAAATGCA
130 TACTAAAATAATATAAAATAATAAAATACA
***
68369287 AAAATAGTATATTTTTTGAAAGTAATAAAATCCGAAAATAAGAAAAATACGAACAAATTCCCAAA
1 AAAATAGTATATTTTTTGAAAGTAATAAAATCCGAAAATAAGAAAAATACGAACAAAGGGCCAAA
* * *
68369352 ATAAGGGGTTTTTACTAAATTTATATAAAAAAA-ACACCAAATTAATACATTTCTAATTTTATGT
66 ATAAGGGGTTTTTACTAAATTTATATAAAAAAACACACTAAATTAATACATTTCAAACTTTATGT
68369416 ACTAAAATAATATAAAATAATAAAATACA
131 ACTAAAATAATATAAAATAATAAAATACA
* * *
68369445 AAAATAGTATATTTTTTGAAAGTAATAAAATTCGAAAATAAGAAAAATACGAACAAATGACCAAA
1 AAAATAGTATATTTTTTGAAAGTAATAAAATCCGAAAATAAGAAAAATACGAACAAAGGGCCAAA
68369510 ATAAGGGGTTTTTACTAAATTTATATTAAAAAAACACACTAAATTAATACATTTCAAACTTTATG
66 ATAAGGGGTTTTTACTAAATTTATA-TAAAAAAACACACTAAATTAATACATTTCAAACTTTATG
**
68369575 TACTAAAATAATATAAAATAATAAAATATG
130 TACTAAAATAATATAAAATAATAAAATACA
68369605 AAAATAGTATATTTTTTGAAAGTAATAAAATCCGAAAATAAGAAAAATACGAACAAAGGGCCAAA
1 AAAATAGTATATTTTTTGAAAGTAATAAAATCCGAAAATAAGAAAAATACGAACAAAGGGCCAAA
68369670 A
66 A
68369671 AATCGGGAAA
Statistics
Matches: 348, Mismatches: 30, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
156 35 0.10
157 33 0.09
158 145 0.42
159 17 0.05
160 118 0.34
ACGTcount: A:0.54, C:0.09, G:0.09, T:0.29
Consensus pattern (159 bp):
AAAATAGTATATTTTTTGAAAGTAATAAAATCCGAAAATAAGAAAAATACGAACAAAGGGCCAAA
ATAAGGGGTTTTTACTAAATTTATATAAAAAAACACACTAAATTAATACATTTCAAACTTTATGT
ACTAAAATAATATAAAATAATAAAATACA
Found at i:68389240 original size:11 final size:11
Alignment explanation
Indices: 68389224--68389254 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
68389214 ATACCCATAC
68389224 CCCATACCTTG
1 CCCATACCTTG
*
68389235 CCCATACCTTT
1 CCCATACCTTG
68389246 CCCATACCT
1 CCCATACCT
68389255 ACCCATACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.19, C:0.48, G:0.03, T:0.29
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:68389893 original size:18 final size:18
Alignment explanation
Indices: 68389804--68389894 Score: 146
Period size: 18 Copynumber: 5.1 Consensus size: 18
68389794 CGTTTACGGC
* *
68389804 ACTATTCACGTATACGGC
1 ACTATTCACGTATACAGT
68389822 ACTATTCACGTATACAGT
1 ACTATTCACGTATACAGT
*
68389840 ACTATTCACGTATACAGC
1 ACTATTCACGTATACAGT
68389858 ACTATTCACGTATACAGT
1 ACTATTCACGTATACAGT
*
68389876 ACTGTTCACGTATACAGT
1 ACTATTCACGTATACAGT
68389894 A
1 A
68389895 GTTGGGATTG
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 68 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (18 bp):
ACTATTCACGTATACAGT
Found at i:68393960 original size:11 final size:11
Alignment explanation
Indices: 68393944--68393974 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
68393934 ATACCCATAC
68393944 CCCATACCTTG
1 CCCATACCTTG
*
68393955 CCCATACCTTT
1 CCCATACCTTG
68393966 CCCATACCT
1 CCCATACCT
68393975 ACCCATACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.19, C:0.48, G:0.03, T:0.29
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:68403348 original size:20 final size:21
Alignment explanation
Indices: 68403313--68403368 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 21
68403303 TCTAATTATT
* *
68403313 TTTATTTCATTAATTA-TATA
1 TTTATTTTATTTATTAGTATA
*
68403333 TTTATTTTATTTATTAGTGTA
1 TTTATTTTATTTATTAGTATA
68403354 TTTGATTATTATTTA
1 TTT-ATT-TTATTTA
68403369 AAGATATATG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
20 14 0.47
21 6 0.20
22 3 0.10
23 7 0.23
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.64
Consensus pattern (21 bp):
TTTATTTTATTTATTAGTATA
Found at i:68404192 original size:3 final size:3
Alignment explanation
Indices: 68404181--68404213 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
68404171 TAATAAATAA
68404181 TAT TAAT TAT TAT TAT TAT TAT TAT TA- TAT TAT
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT
68404214 GAAATAAGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 23 0.82
4 3 0.11
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:68405099 original size:22 final size:24
Alignment explanation
Indices: 68405071--68405114 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
68405061 TATGGCAAGA
68405071 AATTAAG-TAGAAAAG-AAGTATG
1 AATTAAGCTAGAAAAGTAAGTATG
68405093 AATTAAGCTAGAAAAGTAAGTA
1 AATTAAGCTAGAAAAGTAAGTA
68405115 AGCTTAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.35
23 8 0.40
24 5 0.25
ACGTcount: A:0.55, C:0.02, G:0.20, T:0.23
Consensus pattern (24 bp):
AATTAAGCTAGAAAAGTAAGTATG
Found at i:68407850 original size:26 final size:26
Alignment explanation
Indices: 68407820--68407882 Score: 63
Period size: 32 Copynumber: 2.2 Consensus size: 26
68407810 TAAGAAGGAC
68407820 AGTTCTAAATGTATTAACATCTGTTA
1 AGTTCTAAATGTATTAACATCTGTTA
*
68407846 AGTTCCCACACTAAATGTATTGACATCTGTTA
1 AGTT------CTAAATGTATTAACATCTGTTA
68407878 AGTTC
1 AGTTC
68407883 CTGCAGGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 12
0.70 0.02 0.28
Matches are distributed among these distances:
26 5 0.17
32 25 0.83
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (26 bp):
AGTTCTAAATGTATTAACATCTGTTA
Found at i:68415830 original size:16 final size:16
Alignment explanation
Indices: 68415804--68415850 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
68415794 TTGCAAGACT
68415804 GAAGC-AAGAAAAATC
1 GAAGCAAAGAAAAATC
* *
68415819 GAAGCAAAGAAAGAGC
1 GAAGCAAAGAAAAATC
*
68415835 AAAGCAAAGCAAAAAT
1 GAAGCAAAG-AAAAAT
68415851 TGATCAGAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
15 5 0.20
16 16 0.64
17 4 0.16
ACGTcount: A:0.62, C:0.13, G:0.21, T:0.04
Consensus pattern (16 bp):
GAAGCAAAGAAAAATC
Found at i:68423423 original size:14 final size:15
Alignment explanation
Indices: 68423397--68423427 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
68423387 TCCGGGTTCA
68423397 TCAACACATTTTTCT
1 TCAACACATTTTTCT
68423412 TCAACA-ATTTTTCT
1 TCAACACATTTTTCT
68423426 TC
1 TC
68423428 CCATTTCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48
Consensus pattern (15 bp):
TCAACACATTTTTCT
Found at i:68431745 original size:18 final size:18
Alignment explanation
Indices: 68431722--68431811 Score: 117
Period size: 18 Copynumber: 5.0 Consensus size: 18
68431712 CCCAACTACT
*
68431722 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
* *
68431740 GTATACATGAATAGTGCC
1 GTATACGTGAATAGTACC
**
68431758 GTATACGTGAATAGTATT
1 GTATACGTGAATAGTACC
* *
68431776 GTATACGTAAATAGTGCC
1 GTATACGTGAATAGTACC
68431794 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
68431812 ATAAACAGTC
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 59 1.00
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:68431780 original size:36 final size:36
Alignment explanation
Indices: 68431722--68431811 Score: 135
Period size: 36 Copynumber: 2.5 Consensus size: 36
68431712 CCCAACTACT
* *
68431722 GTATACGTGAACAGTACCGTATACATGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACATAAATAGTGCC
** *
68431758 GTATACGTGAATAGTATTGTATACGTAAATAGTGCC
1 GTATACGTGAATAGTACCGTATACATAAATAGTGCC
68431794 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
68431812 ATAAACAGTC
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 47 1.00
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (36 bp):
GTATACGTGAATAGTACCGTATACATAAATAGTGCC
Found at i:68432587 original size:20 final size:18
Alignment explanation
Indices: 68432554--68432597 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
68432544 AACATACATC
68432554 TAATTATTTTTATTTCAT
1 TAATTATTTTTATTTCAT
*
68432572 TAATTATATATTTATTTTAT
1 TAATTAT-T-TTTATTTCAT
68432592 TAATTA
1 TAATTA
68432598 GTGTATTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.30
19 1 0.04
20 15 0.65
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (18 bp):
TAATTATTTTTATTTCAT
Found at i:68432611 original size:20 final size:20
Alignment explanation
Indices: 68432554--68432613 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
68432544 AACATACATC
68432554 TAATTAT-T-TTTAT-TTCAT
1 TAATTATATATTTATATT-AT
*
68432572 TAATTATATATTTATTTTAT
1 TAATTATATATTTATATTAT
*
68432592 TAATTAGTGTATTTA-ATTAT
1 TAATTA-TATATTTATATTAT
68432612 TA
1 TA
68432614 TTTAAAGATA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
18 7 0.19
19 1 0.03
20 19 0.53
21 9 0.25
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (20 bp):
TAATTATATATTTATATTAT
Found at i:68436290 original size:71 final size:71
Alignment explanation
Indices: 68436136--68436292 Score: 181
Period size: 71 Copynumber: 2.2 Consensus size: 71
68436126 ATTATCTCGG
*
68436136 GTTTAGAAAAGAGGTCATGCCTAGTAAGTTAGGACACGATCTTTTCTTAATTCCCGAGATCGTTT
1 GTTT-GAAAAGA--TCATGCCCAGTAAGTTAGGACACGATCTTTTCTTAATTCCCGAGATCGTTT
*
68436201 AAAACTTGA
63 AAAACGTGA
**** * * *
68436210 GAAAAAAAAGATCATGCCCGGTAAGTTAGGACACGAT-TTCTTCTTAATTTCCGAGGTCGTTTAA
1 GTTTGAAAAGATCATGCCCAGTAAGTTAGGACACGATCTT-TTCTTAATTCCCGAGATCGTTTAA
*
68436274 AGCGTGA
65 AACGTGA
68436281 GTTTGAAAAGAT
1 GTTTGAAAAGAT
68436293 TCGTGTATTT
Statistics
Matches: 68, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
70 2 0.03
71 59 0.87
73 6 0.09
74 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (71 bp):
GTTTGAAAAGATCATGCCCAGTAAGTTAGGACACGATCTTTTCTTAATTCCCGAGATCGTTTAAA
ACGTGA
Found at i:68436919 original size:38 final size:38
Alignment explanation
Indices: 68436877--68436954 Score: 129
Period size: 38 Copynumber: 2.1 Consensus size: 38
68436867 GATGTGTATG
* *
68436877 TAGATATATATAGTCATGTGTATAAATTATAGAACATA
1 TAGATATATATAGTCATGTGCATAAATTATAAAACATA
*
68436915 TAGATATATATAGTCGTGTGCATAAATTATAAAACATA
1 TAGATATATATAGTCATGTGCATAAATTATAAAACATA
68436953 TA
1 TA
68436955 AAAATATAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.36
Consensus pattern (38 bp):
TAGATATATATAGTCATGTGCATAAATTATAAAACATA
Found at i:68441670 original size:14 final size:15
Alignment explanation
Indices: 68441644--68441674 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
68441634 TCCGGGTTCA
68441644 TCAACACATTTTTCT
1 TCAACACATTTTTCT
68441659 TCAACA-ATTTTTCT
1 TCAACACATTTTTCT
68441673 TC
1 TC
68441675 CCATTTCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48
Consensus pattern (15 bp):
TCAACACATTTTTCT
Found at i:68444423 original size:20 final size:18
Alignment explanation
Indices: 68444390--68444433 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
68444380 AACATACATC
68444390 TAATTATTTTTATTTCAT
1 TAATTATTTTTATTTCAT
*
68444408 TAATTATATATTTATTTTAT
1 TAATTAT-T-TTTATTTCAT
68444428 TAATTA
1 TAATTA
68444434 GTGTATTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.30
19 1 0.04
20 15 0.65
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (18 bp):
TAATTATTTTTATTTCAT
Found at i:68444447 original size:20 final size:20
Alignment explanation
Indices: 68444390--68444449 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
68444380 AACATACATC
68444390 TAATTAT-T-TTTAT-TTCAT
1 TAATTATATATTTATATT-AT
*
68444408 TAATTATATATTTATTTTAT
1 TAATTATATATTTATATTAT
*
68444428 TAATTAGTGTATTTA-ATTAT
1 TAATTA-TATATTTATATTAT
68444448 TA
1 TA
68444450 TTTAAAGATA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
18 7 0.19
19 1 0.03
20 19 0.53
21 9 0.25
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (20 bp):
TAATTATATATTTATATTAT
Found at i:68456115 original size:21 final size:21
Alignment explanation
Indices: 68456089--68456129 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
68456079 ATCTGCTCAA
* *
68456089 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
68456110 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
68456130 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:68467508 original size:21 final size:21
Alignment explanation
Indices: 68467482--68467524 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
68467472 TTATTAAATG
68467482 TGTCGTATTTATATCAAGGAT
1 TGTCGTATTTATATCAAGGAT
68467503 TGTCGTATTTATATCAAGGAT
1 TGTCGTATTTATATCAAGGAT
68467524 T
1 T
68467525 TTATTTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.09, G:0.19, T:0.44
Consensus pattern (21 bp):
TGTCGTATTTATATCAAGGAT
Found at i:68477124 original size:3 final size:3
Alignment explanation
Indices: 68477116--68477145 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
68477106 TTGTTTTCTA
68477116 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
68477146 TGAAACATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:68480199 original size:3 final size:3
Alignment explanation
Indices: 68480193--68480248 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
68480183 AATAAACCTC
68480193 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
68480241 ATT ATT AT
1 ATT ATT AT
68480249 CTTGTTCAAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:68481774 original size:14 final size:15
Alignment explanation
Indices: 68481748--68481778 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
68481738 TCCAGGTTCA
68481748 TCAACACATTTTTCT
1 TCAACACATTTTTCT
68481763 TCAACA-ATTTTTCT
1 TCAACACATTTTTCT
68481777 TC
1 TC
68481779 CCATTTCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48
Consensus pattern (15 bp):
TCAACACATTTTTCT
Found at i:68488190 original size:14 final size:15
Alignment explanation
Indices: 68488156--68488197 Score: 77
Period size: 15 Copynumber: 2.9 Consensus size: 15
68488146 ATAATATGAC
68488156 ATTTTTTAATTGTAT
1 ATTTTTTAATTGTAT
68488171 ATTTTTTAATTGTAT
1 ATTTTTTAATTGTAT
68488186 A-TTTTTAATTGT
1 ATTTTTTAATTGT
68488198 CATAATAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 11 0.41
15 16 0.59
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (15 bp):
ATTTTTTAATTGTAT
Found at i:68488291 original size:16 final size:16
Alignment explanation
Indices: 68488270--68488302 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
68488260 AAAAGTTATA
68488270 AAAAAATT-AAAACAAT
1 AAAAAATTCAAAA-AAT
68488286 AAAAAATTCAAAAAAT
1 AAAAAATTCAAAAAAT
68488302 A
1 A
68488303 TATAAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAAAATTCAAAAAAT
Found at i:68491533 original size:100 final size:100
Alignment explanation
Indices: 68491429--68491629 Score: 393
Period size: 100 Copynumber: 2.0 Consensus size: 100
68491419 GGTAGATGAG
68491429 TAAAAAAAATTAGTAGGACAAGGTTGGTTAAGTAATTTACCATAGTTAATGCGTCTTCCCGGATT
1 TAAAAAAAATTAGTAGGACAAGGTTGGTTAAGTAATTTACCATAGTTAATGCGTCTTCCCGGATT
68491494 CGCCAATTATAAAAAATTGAAAAAAAAGTTGCATC
66 CGCCAATTATAAAAAATTGAAAAAAAAGTTGCATC
68491529 TAAAAAAAATTAGTAGGACAAGGTTGGTTAAGTAATTTACCATAGTTAATGCGTCTTCCCGGATT
1 TAAAAAAAATTAGTAGGACAAGGTTGGTTAAGTAATTTACCATAGTTAATGCGTCTTCCCGGATT
*
68491594 GGCCAATTATAAAAAATTGAAAAAAAAGTTGCATC
66 CGCCAATTATAAAAAATTGAAAAAAAAGTTGCATC
68491629 T
1 T
68491630 GTTTTGGTTG
Statistics
Matches: 100, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
100 100 1.00
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.29
Consensus pattern (100 bp):
TAAAAAAAATTAGTAGGACAAGGTTGGTTAAGTAATTTACCATAGTTAATGCGTCTTCCCGGATT
CGCCAATTATAAAAAATTGAAAAAAAAGTTGCATC
Found at i:68492574 original size:87 final size:87
Alignment explanation
Indices: 68492428--68492594 Score: 298
Period size: 87 Copynumber: 1.9 Consensus size: 87
68492418 TTCAGCACTA
* *
68492428 TTAATGCATTCATATTCTCGGCCAATTTGAAGCAGTTAATGGCTCTAAAGGCAGCCGAATCCAAT
1 TTAATGCATTCATATTCTCAGCCAATTTGAAGCAGTTAATCGCTCTAAAGGCAGCCGAATCCAAT
68492493 AAATTGCATACTTCACGTAGTG
66 AAATTGCATACTTCACGTAGTG
* *
68492515 TTAATGCATTGATATTCTCAGCCAATTTGAAGCAGTTAATCGCTCTAAAGGCAGCCGAATCCACT
1 TTAATGCATTCATATTCTCAGCCAATTTGAAGCAGTTAATCGCTCTAAAGGCAGCCGAATCCAAT
68492580 AAATTGCATACTTCA
66 AAATTGCATACTTCA
68492595 AGTGAAGAAC
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 76 1.00
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.30
Consensus pattern (87 bp):
TTAATGCATTCATATTCTCAGCCAATTTGAAGCAGTTAATCGCTCTAAAGGCAGCCGAATCCAAT
AAATTGCATACTTCACGTAGTG
Found at i:68492945 original size:153 final size:153
Alignment explanation
Indices: 68492664--68492965 Score: 394
Period size: 153 Copynumber: 2.0 Consensus size: 153
68492654 TTTAAGCATC
** * * *
68492664 TTGCAATATGACAATCCAAGAAACTGAAGCTTGGATAGTCGAGTAAGAGATACAGGCATGCTGAT
1 TTGCAATATGACAATCCAAGAAACCCAAGCTTCGAGAGTCCAGTAAGAGATACAGGCATGCTGAT
*
68492729 GAAATTGTTACCACTAAGACCAAGATGTACCAAAGAGGATAGACCAGAAATATAACTATGAATAT
66 GAAATTGTTACCACTAAGACCAAGATGTACCAAAGAGGATAGACCAGAAATATAACTAGGAATAT
* *
68492794 CTGCTTCACCAAGAGTGCACATG
131 CTCCTTCACAAAGAGTGCACATG
* * *
68492817 TTGCAATTTGACAAGT-CAAGAAACCCAAGCTTCGAGAGTCCAGTAAGAGATGCAGGTATGCTGA
1 TTGCAATATGACAA-TCCAAGAAACCCAAGCTTCGAGAGTCCAGTAAGAGATACAGGCATGCTGA
* *** * *
68492881 TGAAATTGTTACCACGT-AGATCAAGATGTTTTAAAGAGGATATACCAGAAATATCACGT-GGAA
65 TGAAATTGTTACCAC-TAAGACCAAGATGTACCAAAGAGGATAGACCAGAAATATAAC-TAGGAA
*
68492944 TATCTCCTTCACAAAGATTGCA
128 TATCTCCTTCACAAAGAGTGCA
68492966 GTCCCTTAGA
Statistics
Matches: 128, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
153 125 0.98
154 3 0.02
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.24
Consensus pattern (153 bp):
TTGCAATATGACAATCCAAGAAACCCAAGCTTCGAGAGTCCAGTAAGAGATACAGGCATGCTGAT
GAAATTGTTACCACTAAGACCAAGATGTACCAAAGAGGATAGACCAGAAATATAACTAGGAATAT
CTCCTTCACAAAGAGTGCACATG
Found at i:68494087 original size:20 final size:20
Alignment explanation
Indices: 68494062--68494099 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
68494052 GGAAATATAT
*
68494062 TTTCCATTCAATTTTCCATC
1 TTTCCACTCAATTTTCCATC
*
68494082 TTTCCACTCAGTTTTCCA
1 TTTCCACTCAATTTTCCA
68494100 CCCGTTTGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.32, G:0.03, T:0.47
Consensus pattern (20 bp):
TTTCCACTCAATTTTCCATC
Found at i:68504327 original size:70 final size:70
Alignment explanation
Indices: 68504209--68504418 Score: 348
Period size: 70 Copynumber: 3.0 Consensus size: 70
68504199 ATAGGGGCGG
* *
68504209 AAATTAGGGGTCAAAGATTAGTGATGGATGTTCTTCCCAAGAAGAATCCAAGAAGGTGAGAGTTG
1 AAATTAGGGGTCAAAGATAAGTGATGGATGTTCTTTCCAAGAAGAATCCAAGAAGGTGAGAGTTG
68504274 GCACA
66 GCACA
* * * *
68504279 AAATTAGGGGTGAAAGATGAGCGATGGATGTTCTTTCCAAGAAAAATCCAAGAAGGTGAGAGTTG
1 AAATTAGGGGTCAAAGATAAGTGATGGATGTTCTTTCCAAGAAGAATCCAAGAAGGTGAGAGTTG
68504344 GCACA
66 GCACA
* *
68504349 AAATTAGGGGTCAAAGATAAGTGATGGATGTTCTTTACAAGAAGAATCCAAAAAGGTGAGAGTTG
1 AAATTAGGGGTCAAAGATAAGTGATGGATGTTCTTTCCAAGAAGAATCCAAGAAGGTGAGAGTTG
68504414 GCACA
66 GCACA
68504419 GTGGAGGCTA
Statistics
Matches: 129, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
70 129 1.00
ACGTcount: A:0.38, C:0.11, G:0.29, T:0.22
Consensus pattern (70 bp):
AAATTAGGGGTCAAAGATAAGTGATGGATGTTCTTTCCAAGAAGAATCCAAGAAGGTGAGAGTTG
GCACA
Found at i:68504854 original size:9 final size:9
Alignment explanation
Indices: 68504840--68504865 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
68504830 TAAAACTAAA
68504840 TAATAATAT
1 TAATAATAT
68504849 TAATAATAT
1 TAATAATAT
68504858 TAATAATA
1 TAATAATA
68504866 CACATCGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
TAATAATAT
Found at i:68506030 original size:12 final size:12
Alignment explanation
Indices: 68506011--68506041 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
68506001 TATCGCAAAG
68506011 AAAAATAGAAAT
1 AAAAATAGAAAT
*
68506023 AGAAATAGAAAT
1 AAAAATAGAAAT
68506035 AAAAATA
1 AAAAATA
68506042 AAGAACACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.10, T:0.16
Consensus pattern (12 bp):
AAAAATAGAAAT
Found at i:68511147 original size:19 final size:18
Alignment explanation
Indices: 68511116--68511158 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 18
68511106 AACATACATC
68511116 TAATTATTTTTATTTCAT
1 TAATTATTTTTATTTCAT
*
68511134 TAATTATATTTTATTTTAT
1 TAATTAT-TTTTATTTCAT
68511153 TAATTA
1 TAATTA
68511159 GTGTATTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 7 0.30
19 16 0.70
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (18 bp):
TAATTATTTTTATTTCAT
Found at i:68511514 original size:12 final size:12
Alignment explanation
Indices: 68511497--68511528 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
68511487 TGTATTTGAT
68511497 AAATTAAATGTA
1 AAATTAAATGTA
68511509 AAATTAAATGTA
1 AAATTAAATGTA
68511521 AAATTAAA
1 AAATTAAA
68511529 CAAATCCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (12 bp):
AAATTAAATGTA
Found at i:68520166 original size:14 final size:15
Alignment explanation
Indices: 68520140--68520170 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
68520130 TCCGGGTTCA
68520140 TCAACACATTTTTCT
1 TCAACACATTTTTCT
68520155 TCAACA-ATTTTTCT
1 TCAACACATTTTTCT
68520169 TC
1 TC
68520171 CCATTTCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48
Consensus pattern (15 bp):
TCAACACATTTTTCT
Found at i:68522662 original size:35 final size:36
Alignment explanation
Indices: 68522616--68522689 Score: 132
Period size: 37 Copynumber: 2.1 Consensus size: 36
68522606 GTTGGACGGT
68522616 TTGTGTTTTA-CTTTTTTTTATATTATCATATCTAC
1 TTGTGTTTTACCTTTTTTTTATATTATCATATCTAC
68522651 TTGTGTTTTACTCTTTTTTTTATATTATCATATCTAC
1 TTGTGTTTTAC-CTTTTTTTTATATTATCATATCTAC
68522688 TT
1 TT
68522690 TATAATCAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
35 10 0.27
37 27 0.73
ACGTcount: A:0.19, C:0.12, G:0.05, T:0.64
Consensus pattern (36 bp):
TTGTGTTTTACCTTTTTTTTATATTATCATATCTAC
Found at i:68524273 original size:20 final size:18
Alignment explanation
Indices: 68524240--68524283 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
68524230 AACATGCGTC
68524240 TAATTATTTTTATTTCAT
1 TAATTATTTTTATTTCAT
*
68524258 TAATTATATATTTATTTTAT
1 TAATTAT-T-TTTATTTCAT
68524278 TAATTA
1 TAATTA
68524284 GTGTATTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.30
19 1 0.04
20 15 0.65
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (18 bp):
TAATTATTTTTATTTCAT
Found at i:68528090 original size:21 final size:21
Alignment explanation
Indices: 68528066--68528106 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
68528056 ATTTGCTCAA
* *
68528066 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
68528087 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
68528107 TTGGTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:68531982 original size:52 final size:53
Alignment explanation
Indices: 68531879--68531984 Score: 135
Period size: 52 Copynumber: 2.0 Consensus size: 53
68531869 TCTAGATATG
* * * *
68531879 TATATAAAGGGATTACATCAGTTTCGACTGAATAAGTTTATTTGAACAGACTT
1 TATATAAAGGGATTACATCAGTTTCGACAGAATAAATTGATTCGAACAGACTT
* *
68531932 TATA-AAAGGGATTACATCAGTTTCGGTCAG-ATAAATTGATTCGAATAGACTT
1 TATATAAAGGGATTACATCAGTTTC-GACAGAATAAATTGATTCGAACAGACTT
68531984 T
1 T
68531985 TATGCATTCC
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
52 39 0.85
53 7 0.15
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (53 bp):
TATATAAAGGGATTACATCAGTTTCGACAGAATAAATTGATTCGAACAGACTT
Found at i:68537068 original size:14 final size:15
Alignment explanation
Indices: 68537042--68537072 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
68537032 TCCGGGTTCA
68537042 TCAACACATTTTTCT
1 TCAACACATTTTTCT
68537057 TCAACA-ATTTTTCT
1 TCAACACATTTTTCT
68537071 TC
1 TC
68537073 CCATTTCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48
Consensus pattern (15 bp):
TCAACACATTTTTCT
Found at i:68538401 original size:19 final size:19
Alignment explanation
Indices: 68538379--68538415 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
68538369 ACCAAAAATT
68538379 TATTTTAAAAATAAAAAAG
1 TATTTTAAAAATAAAAAAG
*
68538398 TATTTTAAAATTAAAAAA
1 TATTTTAAAAATAAAAAA
68538416 TTAAAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (19 bp):
TATTTTAAAAATAAAAAAG
Found at i:68539256 original size:17 final size:18
Alignment explanation
Indices: 68539230--68539268 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
68539220 GTAACTGTGG
68539230 AAAA-TGTTCTC-AATAT
1 AAAATTGTTCTCTAATAT
*
68539246 AAAATTGTTCTCTCATAT
1 AAAATTGTTCTCTAATAT
68539264 AAAAT
1 AAAAT
68539269 CAAAAGCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 7 0.35
18 9 0.45
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATTGTTCTCTAATAT
Found at i:68539445 original size:15 final size:15
Alignment explanation
Indices: 68539425--68539455 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
68539415 AAAACAATAT
68539425 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
68539440 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
68539455 A
1 A
68539456 CTTACATGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.32, G:0.06, T:0.39
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:68543613 original size:17 final size:18
Alignment explanation
Indices: 68543587--68543625 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
68543577 CAAATTGTGG
68543587 AAAA-TGTTCTC-AATAT
1 AAAATTGTTCTCTAATAT
*
68543603 AAAATTGTTCTCTCATAT
1 AAAATTGTTCTCTAATAT
68543621 AAAAT
1 AAAAT
68543626 CAAAAGCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 7 0.35
18 9 0.45
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATTGTTCTCTAATAT
Found at i:68543802 original size:15 final size:15
Alignment explanation
Indices: 68543782--68543812 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
68543772 AAAACAATAT
68543782 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
68543797 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
68543812 A
1 A
68543813 CTTACATGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.32, G:0.06, T:0.39
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:68552065 original size:16 final size:16
Alignment explanation
Indices: 68552044--68552077 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
68552034 CTAAAAGATG
68552044 ATAGGCTCTTGATACC
1 ATAGGCTCTTGATACC
68552060 ATAGGCTCTTGATACC
1 ATAGGCTCTTGATACC
68552076 AT
1 AT
68552078 TTGTTGAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (16 bp):
ATAGGCTCTTGATACC
Found at i:68558903 original size:21 final size:21
Alignment explanation
Indices: 68558877--68558917 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
68558867 ATCTGCTCAA
* *
68558877 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
68558898 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
68558918 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:68562119 original size:3 final size:3
Alignment explanation
Indices: 68562113--68562143 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
68562103 ATAATAAACC
68562113 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
68562144 CATCTTGTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:68563800 original size:16 final size:16
Alignment explanation
Indices: 68563779--68563820 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
68563769 AAAAGTGCTC
*
68563779 GAAGTTCTAATTTCTA
1 GAAGTTCTAATCTCTA
68563795 GAAGTTCTAATCTCTA
1 GAAGTTCTAATCTCTA
68563811 GAAGTTCTAA
1 GAAGTTCTAA
68563821 ACACAAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.38
Consensus pattern (16 bp):
GAAGTTCTAATCTCTA
Found at i:68580178 original size:6 final size:6
Alignment explanation
Indices: 68580145--68580169 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
68580135 ACTTTTAAAA
68580145 TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT T
68580170 TTATTTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:68583735 original size:6 final size:6
Alignment explanation
Indices: 68583724--68583769 Score: 65
Period size: 6 Copynumber: 7.7 Consensus size: 6
68583714 TGTCAAGGAT
* * *
68583724 AGGGGA AGGGGA AGGGGA AGGGGA AGGGAA AGGGAA AGGGAA AGGG
1 AGGGGA AGGGGA AGGGGA AGGGGA AGGGGA AGGGGA AGGGGA AGGG
68583770 AAGATCAGTG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.39, C:0.00, G:0.61, T:0.00
Consensus pattern (6 bp):
AGGGGA
Found at i:68585035 original size:87 final size:87
Alignment explanation
Indices: 68584886--68585054 Score: 284
Period size: 87 Copynumber: 1.9 Consensus size: 87
68584876 GTTTTTCAGC
* *
68584886 AGTGTTAATGCATTCATATTCTCGGCCAATTTGAAGCAGTTAATGGCTGTAAAGGCACCCGAACC
1 AGTGTTAATGCATTCATATTCTCAGCCAATTTGAAGCAGTTAATGGCTCTAAAGGCACCCGAACC
*
68584951 CATTAAATTGCATACTTTACGT
66 CACTAAATTGCATACTTTACGT
* * *
68584973 AGTGTTAATGCATTGATATTCTCAGCCAATTTGAAGCAGTTAATGGCTCTAAAGGCAGCCGAATC
1 AGTGTTAATGCATTCATATTCTCAGCCAATTTGAAGCAGTTAATGGCTCTAAAGGCACCCGAACC
68585038 CACTAAATTGCATACTT
66 CACTAAATTGCATACTT
68585055 CAAGTGAAGA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 76 1.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (87 bp):
AGTGTTAATGCATTCATATTCTCAGCCAATTTGAAGCAGTTAATGGCTCTAAAGGCACCCGAACC
CACTAAATTGCATACTTTACGT
Found at i:68588593 original size:21 final size:21
Alignment explanation
Indices: 68588561--68588601 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
68588551 GAACATTTGG
68588561 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
68588582 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
68588602 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:68591553 original size:20 final size:21
Alignment explanation
Indices: 68591528--68591568 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
68591518 GGAAATATAT
*
68591528 TTTCCATTCAA-TTTTCCATC
1 TTTCCAATCAAGTTTTCCATC
68591548 TTTCCAATCAAGTTTTCCATC
1 TTTCCAATCAAGTTTTCCATC
68591569 CCTTCAGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.22, C:0.29, G:0.02, T:0.46
Consensus pattern (21 bp):
TTTCCAATCAAGTTTTCCATC
Found at i:68591579 original size:16 final size:15
Alignment explanation
Indices: 68591558--68591587 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
68591548 TTTCCAATCA
68591558 AGTTTTCCATCCCTTC
1 AGTTTTCCA-CCCTTC
68591574 AGTTTTCCACCCTT
1 AGTTTTCCACCCTT
68591588 TTGATTTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.13, C:0.37, G:0.07, T:0.43
Consensus pattern (15 bp):
AGTTTTCCACCCTTC
Done.