Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 23 of 240
Found at i:8193039 original size:17 final size:17
Alignment explanation
Indices: 8193019--8193056 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
8193009 AAAAGAATTC
8193019 GAAAAAAAAATCGAAAA
1 GAAAAAAAAATCGAAAA
*
8193036 GAAAAAAAAATTGAAAA
1 GAAAAAAAAATCGAAAA
8193053 -AAAA
1 GAAAA
8193057 TTGTATACGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.79, C:0.03, G:0.11, T:0.08
Consensus pattern (17 bp):
GAAAAAAAAATCGAAAA
Found at i:8195310 original size:17 final size:18
Alignment explanation
Indices: 8195271--8195312 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
8195261 AAAGAAGAAA
8195271 ACAAAA-AGATGAGTGAT
1 ACAAAAGAGATGAGTGAT
*
8195288 AAAAAAGAGA-GAGTGAT
1 ACAAAAGAGATGAGTGAT
*
8195305 TCAAAAGA
1 ACAAAAGA
8195313 AAAAGAAATG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 18 0.86
18 3 0.14
ACGTcount: A:0.57, C:0.05, G:0.24, T:0.14
Consensus pattern (18 bp):
ACAAAAGAGATGAGTGAT
Found at i:8208474 original size:3 final size:3
Alignment explanation
Indices: 8208468--8208495 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
8208458 AGAAAAAAAT
8208468 GAA GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA G
8208496 GTGATTGTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:8220257 original size:21 final size:20
Alignment explanation
Indices: 8220213--8220257 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
8220203 CATTTAATTT
* *
8220213 TTTATTTTTTATTAAATGAA
1 TTTATTTTTTATCAAATCAA
*
8220233 TTTATATTTTTATCAAATCAC
1 TTTAT-TTTTTATCAAATCAA
8220254 TTTA
1 TTTA
8220258 AAATAAATAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (20 bp):
TTTATTTTTTATCAAATCAA
Found at i:8228870 original size:30 final size:32
Alignment explanation
Indices: 8228802--8228870 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 32
8228792 TTAAGCCCGC
*
8228802 TCATATTATTTTTTATTTTAAAAATATTTATA
1 TCATATTATTTTATATTTTAAAAATATTTATA
* *
8228834 TTATATTATTTTA-ATATTTAATAAT-TTTATA
1 TCATATTATTTTATAT-TTTAAAAATATTTATA
8228865 -CATATT
1 TCATATT
8228871 TTATTTATTA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
30 5 0.16
31 8 0.25
32 19 0.59
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (32 bp):
TCATATTATTTTATATTTTAAAAATATTTATA
Found at i:8235323 original size:19 final size:18
Alignment explanation
Indices: 8235282--8235326 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
8235272 TATATATTGA
8235282 ATTTT-AATTCTTTTAAT
1 ATTTTAAATTCTTTTAAT
*
8235299 -TTTTAAATTTTTTTATAT
1 ATTTTAAATTCTTTTA-AT
8235317 ATTTTAAATT
1 ATTTTAAATT
8235327 ATTTGTTGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 4 0.17
17 9 0.38
18 2 0.08
19 9 0.38
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (18 bp):
ATTTTAAATTCTTTTAAT
Found at i:8241607 original size:24 final size:25
Alignment explanation
Indices: 8241562--8241612 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
8241552 ATTAAGTCCG
* **
8241562 AATTTTCCTATGTAAAGTTTGTTTT
1 AATTTTCCTATCTAAAAATTGTTTT
8241587 AATTTTCCTA-CTAAAAATTGTTTT
1 AATTTTCCTATCTAAAAATTGTTTT
8241611 AA
1 AA
8241613 ATATTAATGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.31, C:0.10, G:0.08, T:0.51
Consensus pattern (25 bp):
AATTTTCCTATCTAAAAATTGTTTT
Found at i:8247139 original size:130 final size:128
Alignment explanation
Indices: 8246900--8247491 Score: 535
Period size: 130 Copynumber: 4.6 Consensus size: 128
8246890 TTAAAAGAAT
* * * * * **
8246900 TTAAATTTGATTGCATAAGTTTGAGGCAACCTGAATCAAGTGATTAATGAATTTACTAAATGAGT
1 TTAAATTTGATTGCGTAAGTTTGAGACAACCTGAATCGAGTGATTGATAAATTTACTAAAAAAGT
* ** ** * * * *
8246965 GATTACACGTTCATACCAAATTCTAAAATAATTTGAATACTTTTTCAATTAAAGTAACCTAAAG
66 GACTACGTGTTCATATTAAATCCTAAGAGAATTTGAATATTTTTTCAATTAAAGTAA-CTAAAG
* ** *
8247029 TTATAATTTGATTGCGTAAGTTTGAGGCAACCCCAAACGAGTGATTGATAAATTTACTAAAAAAG
1 TTA-AATTTGATTGCGTAAGTTTGAGACAACCTGAATCGAGTGATTGATAAATTTACTAAAAAAG
* * * * **
8247094 TGACTACGTGTTGATATTAAGTCTTAAGAGAATTTGAATATTTTTTCAATTAGAGTAACTTGAG
65 TGACTACGTGTTCATATTAAATCCTAAGAGAATTTGAATATTTTTTCAATTAAAGTAACTAAAG
*
8247158 ATTAAAATTTGGTTGCGTAAGTTTGAGACAACCTGAATCGAGTGATGATAGATAAATTTACTAAA
1 -TT-AAATTTGATTGCGTAAGTTTGAGACAACCTGAATCGAGTGAT--T-GATAAATTTACTAAA
* * * * * * *
8247223 AGACTGACTATGTGTTCATATTAAATCCTAAGAGGATTTAAATACTTTTTT-AGTTAGAGTAATC
61 AAAGTGACTACGTGTTCATATTAAATCCTAAGAGAATTTGAATA-TTTTTTCAATTAAAGTAA-C
**
8247287 TATCG
124 TAAAG
* * * * * *
8247292 TTAAATTTTGATTGCGTAAATTTGAGATAACCTGAATTGAGGGATCGATAAATTTATTAAAAAA-
1 TTAAA-TTTGATTGCGTAAGTTTGAGACAACCTGAATCGAGTGATTGATAAATTTACTAAAAAAG
* * * *
8247356 AGACTACGTGTTCATATTAAATCCTAAGAGAATTTGAATATTTTTTCAATTGAAGTGACATAAGG
65 TGACTACGTGTTCATATTAAATCCTAAGAGAATTTGAATATTTTTTCAATTAAAGTAAC-TAAAG
* * * ** * * * * *
8247421 TTAAAACTAGGTTATGTAAATTTGAGGCAACCTGAATCAAGGGATTGATAAGA-TTACT-AAAAG
1 TT-AAATTTGATTGCGTAAGTTTGAGACAACCTGAATCGAGTGATTGATAA-ATTTACTAAAAAA
8247484 GTGACTAC
64 GTGACTAC
8247492 ATTTATATCA
Statistics
Matches: 377, Mismatches: 72, Indels: 28
0.79 0.15 0.06
Matches are distributed among these distances:
128 11 0.03
129 100 0.27
130 155 0.41
131 1 0.00
132 4 0.01
133 97 0.26
134 9 0.02
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (128 bp):
TTAAATTTGATTGCGTAAGTTTGAGACAACCTGAATCGAGTGATTGATAAATTTACTAAAAAAGT
GACTACGTGTTCATATTAAATCCTAAGAGAATTTGAATATTTTTTCAATTAAAGTAACTAAAG
Found at i:8248916 original size:9 final size:9
Alignment explanation
Indices: 8248902--8248937 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
8248892 TGATTCGGTG
8248902 CAGCAGCAA
1 CAGCAGCAA
8248911 CAGCAGCAA
1 CAGCAGCAA
* *
8248920 CAACAGCAG
1 CAGCAGCAA
8248929 CAGCAGCAA
1 CAGCAGCAA
8248938 ATAGCGTCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.44, C:0.33, G:0.22, T:0.00
Consensus pattern (9 bp):
CAGCAGCAA
Found at i:8248918 original size:12 final size:12
Alignment explanation
Indices: 8248901--8248933 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
8248891 ATGATTCGGT
8248901 GCAGCAGCAACA
1 GCAGCAGCAACA
*
8248913 GCAGCAACAACA
1 GCAGCAGCAACA
8248925 GCAGCAGCA
1 GCAGCAGCA
8248934 GCAAATAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.42, C:0.33, G:0.24, T:0.00
Consensus pattern (12 bp):
GCAGCAGCAACA
Found at i:8254943 original size:34 final size:34
Alignment explanation
Indices: 8254902--8254968 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
8254892 TAATAATCAC
* *
8254902 TTATCATACTGCTGTTTGTAATGATGTTATTTCG
1 TTATCATACTGCTATATGTAATGATGTTATTTCG
*
8254936 TTATCATACTGCTATATGTAATGGTGTTATTTC
1 TTATCATACTGCTATATGTAATGATGTTATTTC
8254969 ATTGGCTGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.22, C:0.12, G:0.16, T:0.49
Consensus pattern (34 bp):
TTATCATACTGCTATATGTAATGATGTTATTTCG
Found at i:8266459 original size:111 final size:112
Alignment explanation
Indices: 8266338--8266540 Score: 304
Period size: 111 Copynumber: 1.8 Consensus size: 112
8266328 ACTTATCAAC
* *
8266338 TTTTTATTTATTAGTAAAAAA-ACTTTCTA-TTTAAAAAATTAAATCTTGAAACAAATTCAAAAA
1 TTTTTATTTATTAGTAAAAAACA-TTT-TACTTAAAAAAATTAAATCATGAAACAAATTCAAAAA
*
8266401 TTAAAATTGGTCTCAAAATCTATTAAAAACAAATAGAATAAAAAGTTGA
64 TTAAAATTAGTCTCAAAATCTATTAAAAACAAATAGAATAAAAAGTTGA
* * **
8266450 TTTTT-TTTATTAGTAAAATACATTTTACTTAAAAAAATTAAATCATGAAACAAGTTGGAAAATT
1 TTTTTATTTATTAGTAAAAAACATTTTACTTAAAAAAATTAAATCATGAAACAAATTCAAAAATT
8266514 AAAATTAGTCTCAAAATCTATTAAAAA
66 AAAATTAGTCTCAAAATCTATTAAAAA
8266541 AAAGAAACTT
Statistics
Matches: 82, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
110 2 0.02
111 74 0.90
112 6 0.07
ACGTcount: A:0.50, C:0.08, G:0.06, T:0.36
Consensus pattern (112 bp):
TTTTTATTTATTAGTAAAAAACATTTTACTTAAAAAAATTAAATCATGAAACAAATTCAAAAATT
AAAATTAGTCTCAAAATCTATTAAAAACAAATAGAATAAAAAGTTGA
Found at i:8270919 original size:9 final size:9
Alignment explanation
Indices: 8270905--8270929 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
8270895 AAGAGGTAAC
8270905 ATATTATAT
1 ATATTATAT
8270914 ATATTATAT
1 ATATTATAT
8270923 ATATTAT
1 ATATTAT
8270930 GTGAAATCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
ATATTATAT
Found at i:8271157 original size:236 final size:232
Alignment explanation
Indices: 8270729--8271194 Score: 639
Period size: 235 Copynumber: 2.0 Consensus size: 232
8270719 GATATAAATA
* *
8270729 CTTAACAAATACATTCAAATAGTCATTTGAAAATATGATATTCAACATTAAATACGTAGAATATG
1 CTTAACAAATACATTCAAATAGTCATTTAAAAATATGATATTCAAAATTAAATACGTAGAATATG
* * * * * * *
8270794 AGAAAGTATGTGATGTTTTTATGAGGGGAGTAAATATGTGTTGTATTCTTTTTCCCTTAACTGAT
66 AGAAAGTATGTGATGTTTTCATAAGGGGAGTAAATATGCGCTATACTCTTTTTCCCTTAACCGAT
* * * *
8270859 GTTTTGTTCTATTAAATTTTCTAGGTAAGATTTTTAAAGAGGTAACATATTATATATATTATATA
131 GTTTTGTTCCATTAAATTTTCTAGATAAGATTTTTAAAGAAGCAACATATTATATATA-T-TATA
* * *
8270924 TATTATGTGAAATCTTTTTCCTTCACTAGGATTTTTTTCC
194 GA-TATGCGAAATCTTTTTCCTTCACTAAGATTTTTTTCC
* * *
8270964 CTTAACAAATACATTCAAATAGTCATTTAAAAATCTGGTATTCAAAATTGAATACGTAGAATATG
1 CTTAACAAATACATTCAAATAGTCATTTAAAAATATGATATTCAAAATTAAATACGTAGAATATG
*
8271029 AGAAAGTATGTGATGTTTTCATAAGGGGGAGTAAATATGCGCTATGCTCTTTTTCCCTTAACCGA
66 AGAAAGTATGTGATGTTTTCATAA-GGGGAGTAAATATGCGCTATACTCTTTTTCCCTTAACCGA
** *
8271094 TGTTTT-TTCCCATTAGGTTTTCCT-GATAAGATTTTTAATGAAGCAACATATTATATATATTAT
130 TGTTTTGTT-CCATTAAATTTT-CTAGATAAGATTTTTAAAGAAGCAACATATTATATATATTAT
* *
8271157 AGATATGCGTACTCTTTTTCCTTCACTAAGATTTTTTT
193 AGATATGCGAAATCTTTTTCCTTCACTAAGATTTTTTT
8271195 TCCCACATGA
Statistics
Matches: 203, Mismatches: 25, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
233 31 0.15
234 5 0.02
235 85 0.42
236 80 0.39
237 2 0.01
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.41
Consensus pattern (232 bp):
CTTAACAAATACATTCAAATAGTCATTTAAAAATATGATATTCAAAATTAAATACGTAGAATATG
AGAAAGTATGTGATGTTTTCATAAGGGGAGTAAATATGCGCTATACTCTTTTTCCCTTAACCGAT
GTTTTGTTCCATTAAATTTTCTAGATAAGATTTTTAAAGAAGCAACATATTATATATATTATAGA
TATGCGAAATCTTTTTCCTTCACTAAGATTTTTTTCC
Found at i:8276821 original size:21 final size:22
Alignment explanation
Indices: 8276779--8276822 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
8276769 ATCTTCAAAG
*
8276779 TAATATATATTTATATAAATTT
1 TAATATATATTTACATAAATTT
* *
8276801 TAATAT-TTTTTACATAGATTT
1 TAATATATATTTACATAAATTT
8276822 T
1 T
8276823 CACTTCTATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (22 bp):
TAATATATATTTACATAAATTT
Found at i:8277452 original size:15 final size:15
Alignment explanation
Indices: 8277432--8277461 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8277422 CAATAAATAA
8277432 TCATAAATTTGAAAT
1 TCATAAATTTGAAAT
*
8277447 TCATAATTTTGAAAT
1 TCATAAATTTGAAAT
8277462 ATAAAATTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (15 bp):
TCATAAATTTGAAAT
Found at i:8277927 original size:20 final size:20
Alignment explanation
Indices: 8277902--8277940 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
8277892 ACCCTAAACC
8277902 CTTTAATTGATACTAGTTGG
1 CTTTAATTGATACTAGTTGG
*
8277922 CTTTAATTTATACTAGTTG
1 CTTTAATTGATACTAGTTG
8277941 TTATGATGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.10, G:0.15, T:0.49
Consensus pattern (20 bp):
CTTTAATTGATACTAGTTGG
Found at i:8279471 original size:20 final size:17
Alignment explanation
Indices: 8279431--8279473 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
8279421 TTTCATCAAT
*
8279431 TTAATATTAAATTTAAT
1 TTAATATTAAATTTAAA
8279448 TTAATATTAAATCTATTAAA
1 TTAATATTAAA--T-TTAAA
8279468 TTAATA
1 TTAATA
8279474 GAATAATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 11 0.50
19 1 0.05
20 10 0.45
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (17 bp):
TTAATATTAAATTTAAA
Found at i:8314237 original size:2 final size:2
Alignment explanation
Indices: 8314230--8314270 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
8314220 TATACAGACA
* * *
8314230 GT GT GT GT GT GT GT GT GT GT GT GT GC GC GC GT GT GT GT GT G
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT G
8314271 AGGGAGAAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.07, G:0.51, T:0.41
Consensus pattern (2 bp):
GT
Found at i:8315035 original size:22 final size:24
Alignment explanation
Indices: 8315010--8315061 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 24
8315000 TATCATATAT
*
8315010 AATATATATTTTA-AAAGTT-TAA
1 AATATATATTTTATAAAATTCTAA
8315032 AATAT-T-TTTTATAAAATTCTAA
1 AATATATATTTTATAAAATTCTAA
*
8315054 AATGTATA
1 AATATATA
8315062 ATTATTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
20 5 0.21
21 6 0.25
22 12 0.50
23 1 0.04
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (24 bp):
AATATATATTTTATAAAATTCTAA
Found at i:8315041 original size:20 final size:22
Alignment explanation
Indices: 8315013--8315056 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 22
8315003 CATATATAAT
*
8315013 ATATATTTTA-AAAGTT-TAAA
1 ATATATTTTATAAAATTCTAAA
*
8315033 ATATTTTTTATAAAATTCTAAA
1 ATATATTTTATAAAATTCTAAA
8315055 AT
1 AT
8315057 GTATAATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 9 0.45
21 5 0.25
22 6 0.30
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
ATATATTTTATAAAATTCTAAA
Found at i:8327563 original size:23 final size:23
Alignment explanation
Indices: 8327533--8327581 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
8327523 TTTTATTGAT
8327533 TATATATATTTTCTAAATTTTTA
1 TATATATATTTTCTAAATTTTTA
8327556 TATATATATTTTCTAAATTTTTA
1 TATATATATTTTCTAAATTTTTA
8327579 TAT
1 TAT
8327582 TTTTAATGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (23 bp):
TATATATATTTTCTAAATTTTTA
Found at i:8336155 original size:27 final size:27
Alignment explanation
Indices: 8336083--8336155 Score: 119
Period size: 27 Copynumber: 2.7 Consensus size: 27
8336073 GTCGAGTGGC
*
8336083 GCCTCATAGGGAGGCACCATTAAAAGT
1 GCCTCATAGGGAGGCGCCATTAAAAGT
*
8336110 GCCTCATAAGGAGGCGCCATTAAAAGT
1 GCCTCATAGGGAGGCGCCATTAAAAGT
*
8336137 GCCTCATAGGGAGGTGCCA
1 GCCTCATAGGGAGGCGCCA
8336156 ATGGGTAATT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.30, C:0.23, G:0.29, T:0.18
Consensus pattern (27 bp):
GCCTCATAGGGAGGCGCCATTAAAAGT
Found at i:8336209 original size:19 final size:19
Alignment explanation
Indices: 8336160--8336838 Score: 211
Period size: 19 Copynumber: 33.3 Consensus size: 19
8336150 GTGCCAATGG
*
8336160 GTAATTTTGTATGTATATT
1 GTAATTTTGTATGAATATT
8336179 GTAACTTTTTGTATGAATATT
1 GTAA--TTTTGTATGAATATT
*
8336200 ATAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
*
8336219 GTAATTATTTTAT-AATTAATTTT
1 GTAATT-TTGTATGAA-T-A--TT
* * *
8336242 GT-ATTTATAGTTTTGGAT-TA
1 GTAATTT-T-G-TATGAATATT
*
8336262 GT-ATTTTGTATGAATAGT
1 GTAATTTTGTATGAATATT
8336280 GTAATTTTTTGTATGAATATT
1 GTAA--TTTTGTATGAATATT
*
8336301 GTAATTTTTTATGAATATT
1 GTAATTTTGTATGAATATT
*
8336320 GTAATTATT-T-T--ATAAT
1 GTAATT-TTGTATGAATATT
* *
8336336 -TAATTTTGTATTTATAGTTTTT
1 GTAATTTTGTA-TGA-A--TATT
*
8336358 GATTAGTATTTTGTATGAATGTT
1 G--TA--ATTTTGTATGAATATT
8336381 GTAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
*
8336400 GTAATTATTTTAT-AATTAATT
1 GTAATT-TTGTATGAA-T-ATT
* * * *
8336421 TTATATTTATAGTTTTGGAT-TA
1 GTA-ATTT-T-G-TATGAATATT
*
8336443 GT-ATTTTGTATGAATAGT
1 GTAATTTTGTATGAATATT
8336461 GTAATTTTTTGTATGAATATT
1 GTAA--TTTTGTATGAATATT
*
8336482 GTAATTTTTTATGAATATT
1 GTAATTTTGTATGAATATT
*
8336501 GTAATTATTTTAT-AATTAATT
1 GTAATT-TTGTATGAA-T-ATT
* * *
8336522 TTATATTTATAGTTTTTG-AT-TA
1 GTA-ATTT-T-G--TATGAATATT
* *
8336544 GT-ATTTTGTATGAATGTC
1 GTAATTTTGTATGAATATT
8336562 GTAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
* *
8336581 TTAATTATT-T-T--ATAAT
1 GTAATT-TTGTATGAATATT
* *
8336597 -TAATTTTGTATTTATAGTTTTT
1 GTAATTTTGTA-TGA-A--TATT
8336619 GATTAGTATTTTGTATGAATATT
1 G--TA--ATTTTGTATGAATATT
* *
8336642 ATAATGTTGTATGAATATT
1 GTAATTTTGTATGAATATT
* *
8336661 ATAATTATTTTAT-AATTAATTTT
1 GTAATT-TTGTATGAA-T-A--TT
* * *
8336684 GT-ATTTATAGTTTTGGAT-TA
1 GTAATTT-T-G-TATGAATATT
8336704 GT-ATTTTGTATGAATATTGTAATTTT
1 GTAATTTTGTATG-A-A---T-A--TT
8336730 GTAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
8336749 GTAATATTGTTTGTATGAATATT
1 GT-A-A-T-TTTGTATGAATATT
*
8336772 GTAATTTTGTATGGATATT
1 GTAATTTTGTATGAATATT
8336791 GTAATATTGTTTGTATGAATATT
1 GT-A-A-T-TTTGTATGAATATT
8336814 GTAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
8336833 GTAATT
1 GTAATT
8336839 ATTTTATAAT
Statistics
Matches: 504, Mismatches: 62, Indels: 188
0.67 0.08 0.25
Matches are distributed among these distances:
14 4 0.01
15 12 0.02
16 11 0.02
17 17 0.03
18 13 0.03
19 180 0.36
20 57 0.11
21 78 0.15
22 30 0.06
23 45 0.09
24 10 0.02
25 13 0.03
26 8 0.02
27 26 0.05
ACGTcount: A:0.30, C:0.00, G:0.14, T:0.56
Consensus pattern (19 bp):
GTAATTTTGTATGAATATT
Found at i:8336338 original size:101 final size:100
Alignment explanation
Indices: 8336163--8336412 Score: 405
Period size: 101 Copynumber: 2.5 Consensus size: 100
8336153 CCAATGGGTA
* * * *
8336163 ATTTTGTATGTATATTGTAACTTTTTGTATGAATATTATAATTTTGTATGAATATTGTAATTATT
1 ATTTTGTATGAATAGTGTAA-TTTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATT
8336228 TTATAATTAATTTTGTATTTATAGTTTTGGATTAGT
65 TTATAATTAATTTTGTATTTATAGTTTTGGATTAGT
8336264 ATTTTGTATGAATAGTGTAATTTTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATT
1 ATTTTGTATGAATAGTGTAA-TTTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATT
*
8336329 TTATAATTAATTTTGTATTTATAGTTTTTGATTAGT
65 TTATAATTAATTTTGTATTTATAGTTTTGGATTAGT
8336365 ATTTTGTATGAAT-GTTGTAA-TTTTGTATGAATATTGTAATTATTTTAT
1 ATTTTGTATGAATAG-TGTAATTTTTGTATGAATATTGTAATT-TTTTAT
8336413 AATTAATTTT
Statistics
Matches: 141, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
99 21 0.15
100 7 0.05
101 113 0.80
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (100 bp):
ATTTTGTATGAATAGTGTAATTTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATTT
TATAATTAATTTTGTATTTATAGTTTTGGATTAGT
Found at i:8336388 original size:80 final size:80
Alignment explanation
Indices: 8336286--8336493 Score: 339
Period size: 80 Copynumber: 2.6 Consensus size: 80
8336276 TAGTGTAATT
* *
8336286 TTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
1 TTTTGTATGAATGTTGTAATTTTTTATGAATATTGTAATTATTTTATAATTAATTTTATATTTAT
*
8336351 AGTTTTTGATTAGTA
66 AGTTTTGGATTAGTA
*
8336366 TTTTGTATGAATGTTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTATATTTAT
1 TTTTGTATGAATGTTGTAATTTTTTATGAATATTGTAATTATTTTATAATTAATTTTATATTTAT
8336431 AGTTTTGGATTAGTA
66 AGTTTTGGATTAGTA
8336446 TTTTGTATGAATAG-TGTAATTTTTTGTATGAATATTGTAATT-TTTTAT
1 TTTTGTATGAAT-GTTGTAA-TTTTT-TATGAATATTGTAATTATTTTAT
8336494 GAATATTGTA
Statistics
Matches: 120, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
80 93 0.77
81 11 0.09
82 16 0.13
ACGTcount: A:0.29, C:0.00, G:0.13, T:0.58
Consensus pattern (80 bp):
TTTTGTATGAATGTTGTAATTTTTTATGAATATTGTAATTATTTTATAATTAATTTTATATTTAT
AGTTTTGGATTAGTA
Found at i:8336471 original size:101 final size:99
Alignment explanation
Indices: 8336365--8336586 Score: 374
Period size: 101 Copynumber: 2.2 Consensus size: 99
8336355 TTTGATTAGT
*
8336365 ATTTTGTATGAATGTTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTATATTTA
1 ATTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTATATTTA
8336430 TAGTTTTGGATTAGTATTTTGTATGAATAGT-GTA
66 TAGTTTTGGATTAGTATTTTGTATGAAT-GTCGTA
*
8336464 ATTTTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATTTTATAATTAATTTTATATT
1 A--TTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTATATT
*
8336529 TATAGTTTTTGATTAGTATTTTGTATGAATGTCGTA
64 TATAGTTTTGGATTAGTATTTTGTATGAATGTCGTA
*
8336565 ATTTTGTATGAATATTTTAATT
1 ATTTTGTATGAATATTGTAATT
8336587 ATTTTATAAT
Statistics
Matches: 116, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
99 21 0.18
100 2 0.02
101 93 0.80
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.56
Consensus pattern (99 bp):
ATTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTATATTTA
TAGTTTTGGATTAGTATTTTGTATGAATGTCGTA
Found at i:8336489 original size:181 final size:181
Alignment explanation
Indices: 8336185--8336673 Score: 856
Period size: 181 Copynumber: 2.7 Consensus size: 181
8336175 TATTGTAACT
* *
8336185 TTTTGTATGAATATTATAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
1 TTTTGTATGAATGTTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
8336250 AGTTTTGGATTAGTATTTTGTATGAATAGTGTAATTTTTTGTATGAATATTGTAATTTTTTATGA
66 AGTTTTGGATTAGTATTTTGTATGAATAGTGTAATTTTTTGTATGAATATTGTAATTTTTTATGA
*
8336315 ATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTTGATTAGTA
131 ATATTGTAATTATTTTATAATTAATTTTATATTTATAGTTTTTGATTAGTA
*
8336366 TTTTGTATGAATGTTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTATATTTAT
1 TTTTGTATGAATGTTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
8336431 AGTTTTGGATTAGTATTTTGTATGAATAGTGTAATTTTTTGTATGAATATTGTAATTTTTTATGA
66 AGTTTTGGATTAGTATTTTGTATGAATAGTGTAATTTTTTGTATGAATATTGTAATTTTTTATGA
8336496 ATATTGTAATTATTTTATAATTAATTTTATATTTATAGTTTTTGATTAGTA
131 ATATTGTAATTATTTTATAATTAATTTTATATTTATAGTTTTTGATTAGTA
* *
8336547 TTTTGTATGAATGTCGTAATTTTGTATGAATATTTTAATTATTTTATAATTAATTTTGTATTTAT
1 TTTTGTATGAATGTTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
* * * * *
8336612 AGTTTTTGATTAGTATTTTGTATGAATATTATAA--TGTTGTATGAATATTATAATTATTTTAT
66 AGTTTTGGATTAGTATTTTGTATGAATAGTGTAATTTTTTGTATGAATATTGTAATT-TTTTAT
8336674 AATTAATTTT
Statistics
Matches: 295, Mismatches: 12, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
179 19 0.06
180 6 0.02
181 270 0.92
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.57
Consensus pattern (181 bp):
TTTTGTATGAATGTTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
AGTTTTGGATTAGTATTTTGTATGAATAGTGTAATTTTTTGTATGAATATTGTAATTTTTTATGA
ATATTGTAATTATTTTATAATTAATTTTATATTTATAGTTTTTGATTAGTA
Found at i:8336569 original size:80 final size:80
Alignment explanation
Indices: 8336467--8336732 Score: 451
Period size: 80 Copynumber: 3.3 Consensus size: 80
8336457 TAGTGTAATT
* * *
8336467 TTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATTTTATAATTAATTTTATATTTAT
1 TTTTGTATGAATATTGTAATTTTGTATGAATATTATAATTATTTTATAATTAATTTTGTATTTAT
8336532 AGTTTTTGATTAGTA
66 AGTTTTTGATTAGTA
* * *
8336547 TTTTGTATGAATGTCGTAATTTTGTATGAATATTTTAATTATTTTATAATTAATTTTGTATTTAT
1 TTTTGTATGAATATTGTAATTTTGTATGAATATTATAATTATTTTATAATTAATTTTGTATTTAT
8336612 AGTTTTTGATTAGTA
66 AGTTTTTGATTAGTA
* *
8336627 TTTTGTATGAATATTATAATGTTGTATGAATATTATAATTATTTTATAATTAATTTTGTATTTAT
1 TTTTGTATGAATATTGTAATTTTGTATGAATATTATAATTATTTTATAATTAATTTTGTATTTAT
*
8336692 AGTTTTGGATTAGTA
66 AGTTTTTGATTAGTA
8336707 TTTTGTATGAATATTGTAATTTTGTA
1 TTTTGTATGAATATTGTAATTTTGTA
8336733 ATTTTGTATG
Statistics
Matches: 173, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 173 1.00
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.57
Consensus pattern (80 bp):
TTTTGTATGAATATTGTAATTTTGTATGAATATTATAATTATTTTATAATTAATTTTGTATTTAT
AGTTTTTGATTAGTA
Found at i:8336654 original size:261 final size:268
Alignment explanation
Indices: 8336286--8336777 Score: 818
Period size: 261 Copynumber: 1.9 Consensus size: 268
8336276 TAGTGTAATT
* *
8336286 TTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
1 TTTTGTATGAATATCGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
* * * *
8336351 AGTTTTTGATTAGTATTTTGTATGAATGTTGTAATTTTGTATGAATATTGTAATTATTTTATAAT
66 AGTTTTTGATTAGTATTTTGTATGAATATTATAATGTTGTATGAATATTATAATTATTTTATAAT
8336416 TAATTTTATATTTATAGTTTTGGATTAGTATTTTGTATGAATAGTGTAA-T-T-TTTTGTATGAA
131 TAATTTTATATTTATAGTTTTGGATTAGTATTTTGTATGAATAGTGTAATTGTATTTTGTATGAA
8336478 TATTGT-A-ATT-TTT-TATGAATATTGTAATTATTTTATAATTAATTTTATATTTATAGTTTTT
196 TATTGTAATATTGTTTGTATGAATATTGTAATTATTTTATAATTAATTTTATATTTATAGTTTTT
8336539 GATTAGTA
261 GATTAGTA
* *
8336547 TTTTGTATGAATGTCGTAATTTTGTATGAATATTTTAATTATTTTATAATTAATTTTGTATTTAT
1 TTTTGTATGAATATCGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
8336612 AGTTTTTGATTAGTATTTTGTATGAATATTATAATGTTGTATGAATATTATAATTATTTTATAAT
66 AGTTTTTGATTAGTATTTTGTATGAATATTATAATGTTGTATGAATATTATAATTATTTTATAAT
* *
8336677 TAATTTTGTATTTATAGTTTTGGATTAGTATTTTGTATGAATATTGTAATTTTGTAATTTTGTAT
131 TAATTTTATATTTATAGTTTTGGATTAGTATTTTGTATGAATAGTGTAA--TTGT-ATTTTGTAT
8336742 GAATATTGTAATATTGTTTGTATGAATATTGTAATT
193 GAATATTGTAATATTGTTTGTATGAATATTGTAATT
8336778 TTGTATGGAT
Statistics
Matches: 211, Mismatches: 10, Indels: 10
0.91 0.04 0.04
Matches are distributed among these distances:
261 169 0.80
264 1 0.00
265 1 0.00
267 17 0.08
268 1 0.00
269 3 0.01
270 3 0.01
271 16 0.08
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (268 bp):
TTTTGTATGAATATCGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
AGTTTTTGATTAGTATTTTGTATGAATATTATAATGTTGTATGAATATTATAATTATTTTATAAT
TAATTTTATATTTATAGTTTTGGATTAGTATTTTGTATGAATAGTGTAATTGTATTTTGTATGAA
TATTGTAATATTGTTTGTATGAATATTGTAATTATTTTATAATTAATTTTATATTTATAGTTTTT
GATTAGTA
Found at i:8336736 original size:27 final size:27
Alignment explanation
Indices: 8336706--8336782 Score: 117
Period size: 27 Copynumber: 3.0 Consensus size: 27
8336696 TTGGATTAGT
8336706 ATTTTGTATGAATATTGTAATTTTGTA
1 ATTTTGTATGAATATTGTAATTTTGTA
*
8336733 ATTTTGTATGAATATTGTAATATTG--
1 ATTTTGTATGAATATTGTAATTTTGTA
8336758 --TTTGTATGAATATTGTAATTTTGTA
1 ATTTTGTATGAATATTGTAATTTTGTA
8336783 TGGATATTGT
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
23 22 0.48
27 24 0.52
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.55
Consensus pattern (27 bp):
ATTTTGTATGAATATTGTAATTTTGTA
Found at i:8336778 original size:42 final size:42
Alignment explanation
Indices: 8336728--8336837 Score: 211
Period size: 42 Copynumber: 2.6 Consensus size: 42
8336718 TATTGTAATT
8336728 TTGTAATTTTGTATGAATATTGTAATATTGTTTGTATGAATA
1 TTGTAATTTTGTATGAATATTGTAATATTGTTTGTATGAATA
*
8336770 TTGTAATTTTGTATGGATATTGTAATATTGTTTGTATGAATA
1 TTGTAATTTTGTATGAATATTGTAATATTGTTTGTATGAATA
8336812 TTGTAATTTTGTATGAATATTGTAAT
1 TTGTAATTTTGTATGAATATTGTAAT
8336838 TATTTTATAA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 66 1.00
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.53
Consensus pattern (42 bp):
TTGTAATTTTGTATGAATATTGTAATATTGTTTGTATGAATA
Found at i:8336873 original size:33 final size:32
Alignment explanation
Indices: 8336836--8336932 Score: 82
Period size: 33 Copynumber: 3.1 Consensus size: 32
8336826 GAATATTGTA
8336836 ATTATTTTATAATTAATTTGTTAGTAATTTAGG
1 ATTATTTTATAATTAATTT-TTAGTAATTTAGG
* *
8336869 ATTATGTTAT-A--AATTTTT-GT-ATTT-GTA
1 ATTATTTTATAATTAATTTTTAGTAATTTAG-G
*
8336896 ATTA-TTTAAAATTTAATTTATTAGTAATTTAGG
1 ATTATTTTATAA-TTAATTT-TTAGTAATTTAGG
8336929 ATTA
1 ATTA
8336933 AGCTATAAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 18
0.68 0.07 0.25
Matches are distributed among these distances:
26 4 0.08
27 9 0.18
28 2 0.04
29 2 0.04
30 10 0.20
31 2 0.04
32 3 0.06
33 17 0.34
34 1 0.02
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (32 bp):
ATTATTTTATAATTAATTTTTAGTAATTTAGG
Found at i:8336901 original size:60 final size:60
Alignment explanation
Indices: 8336831--8336948 Score: 175
Period size: 60 Copynumber: 2.0 Consensus size: 60
8336821 TGTATGAATA
* * * * *
8336831 TTGTAATTATTTTATAA-TTAATTTGTTAGTAATTTAGGATTATGTTATAAATTTTTGTAT
1 TTGTAATTA-TTTAAAATTTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTAT
8336891 TTGTAATTATTTAAAATTTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGT
1 TTGTAATTATTTAAAATTTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGT
8336949 GTTTAGTTTA
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
59 6 0.12
60 46 0.88
ACGTcount: A:0.34, C:0.01, G:0.12, T:0.53
Consensus pattern (60 bp):
TTGTAATTATTTAAAATTTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTAT
Found at i:8337106 original size:15 final size:16
Alignment explanation
Indices: 8337070--8337106 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
8337060 CTCATTTAAT
8337070 TTTTATATAATGTAAC
1 TTTTATATAATGTAAC
*
8337086 TTTTATATTATGTAA-
1 TTTTATATAATGTAAC
8337101 TTTTAT
1 TTTTAT
8337107 TTGATTTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.59
Consensus pattern (16 bp):
TTTTATATAATGTAAC
Found at i:8337197 original size:15 final size:15
Alignment explanation
Indices: 8337177--8337227 Score: 84
Period size: 15 Copynumber: 3.4 Consensus size: 15
8337167 TAATACCATT
*
8337177 GGCGCCTCTCAGATA
1 GGCGCCTCTGAGATA
8337192 GGCGCCTCTGAGATA
1 GGCGCCTCTGAGATA
*
8337207 GGCACCTCTGAGATA
1 GGCGCCTCTGAGATA
8337222 GGCGCC
1 GGCGCC
8337228 AATACTATGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (15 bp):
GGCGCCTCTGAGATA
Found at i:8342540 original size:7 final size:7
Alignment explanation
Indices: 8342528--8342556 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
8342518 AAGCACACCG
8342528 ATAAAAA
1 ATAAAAA
8342535 ATAAAAA
1 ATAAAAA
8342542 AT-AAAA
1 ATAAAAA
8342548 ATAAAAA
1 ATAAAAA
8342555 AT
1 AT
8342557 CACATCGGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.29
7 15 0.71
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (7 bp):
ATAAAAA
Found at i:8342549 original size:13 final size:13
Alignment explanation
Indices: 8342531--8342556 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8342521 CACACCGATA
8342531 AAAAATAAAAAAT
1 AAAAATAAAAAAT
8342544 AAAAATAAAAAAT
1 AAAAATAAAAAAT
8342557 CACATCGGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:8351240 original size:11 final size:11
Alignment explanation
Indices: 8351203--8351249 Score: 51
Period size: 11 Copynumber: 4.1 Consensus size: 11
8351193 CAATATTATT
8351203 AAAATTATAAA
1 AAAATTATAAA
*
8351214 AATAATAATTTAAA
1 AA-AAT--TATAAA
8351228 AAAATTATAAA
1 AAAATTATAAA
8351239 AAAATTA-AAA
1 AAAATTATAAA
8351249 A
1 A
8351250 TAATAGAGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
10 4 0.13
11 14 0.45
12 3 0.10
13 3 0.10
14 7 0.23
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
AAAATTATAAA
Found at i:8351819 original size:17 final size:17
Alignment explanation
Indices: 8351793--8351825 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8351783 TTTTTGAAAA
*
8351793 GTTGATAGTTAAATTTG
1 GTTGAAAGTTAAATTTG
8351810 GTTGAAAGTTAAATTT
1 GTTGAAAGTTAAATTT
8351826 AAATAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.45
Consensus pattern (17 bp):
GTTGAAAGTTAAATTTG
Found at i:8351842 original size:18 final size:17
Alignment explanation
Indices: 8351819--8351852 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
8351809 GGTTGAAAGT
*
8351819 TAAATTTAAATAAAAAAC
1 TAAATTGAAA-AAAAAAC
8351837 TAAATTGAAAAAAAAA
1 TAAATTGAAAAAAAAA
8351853 TATTTATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (17 bp):
TAAATTGAAAAAAAAAC
Found at i:8353096 original size:30 final size:30
Alignment explanation
Indices: 8353055--8353111 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
8353045 GCTTAGGGAC
*
8353055 AAAAGTGTAATTATGCAAAAGTTTGGGGGT
1 AAAAGTGTAATTATGCAAAAGGTTGGGGGT
* * *
8353085 AAAATTGTAATTTTTCAAAAGGTTGGG
1 AAAAGTGTAATTATGCAAAAGGTTGGG
8353112 TGGTGGATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.37, C:0.04, G:0.26, T:0.33
Consensus pattern (30 bp):
AAAAGTGTAATTATGCAAAAGGTTGGGGGT
Found at i:8353570 original size:69 final size:69
Alignment explanation
Indices: 8353437--8353632 Score: 266
Period size: 69 Copynumber: 2.8 Consensus size: 69
8353427 ATTGAATATA
* *
8353437 AAGGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTAT
1 AAGGGGGTTGCTAAGTGCTGATTCCCC---T-A--AGAGGTTGCTAAGTGCTGATTCCACCGTAT
8353502 TTTAAATCTG
60 TTTAAATCTG
8353512 AAGGGGGTTGCTAAGTGCTGATTCCCCTAAGAGGTTGCTAAGTGCTGATTCCACCGTATTTTAAA
1 AAGGGGGTTGCTAAGTGCTGATTCCCCTAAGAGGTTGCTAAGTGCTGATTCCACCGTATTTTAAA
*
8353577 TGTG
66 TCTG
* * * * *
8353581 AAGGGGGTTGCTAAGTGTTGATTCCCCCAAGGGGTTCCTAAGTGTTGATTCC
1 AAGGGGGTTGCTAAGTGCTGATTCCCCTAAGAGGTTGCTAAGTGCTGATTCC
8353633 CTGAATCATT
Statistics
Matches: 113, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
69 84 0.74
71 1 0.01
72 1 0.01
75 27 0.24
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.32
Consensus pattern (69 bp):
AAGGGGGTTGCTAAGTGCTGATTCCCCTAAGAGGTTGCTAAGTGCTGATTCCACCGTATTTTAAA
TCTG
Found at i:8358456 original size:15 final size:15
Alignment explanation
Indices: 8358433--8358484 Score: 68
Period size: 15 Copynumber: 3.4 Consensus size: 15
8358423 AAGTTTGCTT
8358433 GATAGAGAATTAAAG
1 GATAGAGAATTAAAG
*
8358448 GATACAGAATTAAAG
1 GATAGAGAATTAAAG
* *
8358463 GGTAGAAAATTAAAAG
1 GATAGAGAATT-AAAG
8358479 GATAGA
1 GATAGA
8358485 AAATATTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
15 22 0.71
16 9 0.29
ACGTcount: A:0.54, C:0.02, G:0.25, T:0.19
Consensus pattern (15 bp):
GATAGAGAATTAAAG
Found at i:8369332 original size:21 final size:21
Alignment explanation
Indices: 8369303--8369417 Score: 81
Period size: 21 Copynumber: 5.5 Consensus size: 21
8369293 AGTCAACTTA
8369303 TATGAGTTTCAGATTAACCCT
1 TATGAGTTTCAGATTAACCCT
* * *
8369324 TATGGGTTTCAG-TTCAGCTCT
1 TATGAGTTTCAGATT-AACCCT
* * *
8369345 TTTGAGCTTCAGTTTAACCCT
1 TATGAGTTTCAGATTAACCCT
* * * * **
8369366 AATGGGTTTCAGTTTAGCTTT
1 TATGAGTTTCAGATTAACCCT
*
8369387 TCTGAGCTTT-AGATTAACCCT
1 TATGAG-TTTCAGATTAACCCT
8369408 TATGAGTTTC
1 TATGAGTTTC
8369418 CGTTCAGCTC
Statistics
Matches: 67, Mismatches: 23, Indels: 8
0.68 0.23 0.08
Matches are distributed among these distances:
20 5 0.07
21 57 0.85
22 5 0.07
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.43
Consensus pattern (21 bp):
TATGAGTTTCAGATTAACCCT
Found at i:8369371 original size:42 final size:43
Alignment explanation
Indices: 8369305--8369429 Score: 173
Period size: 42 Copynumber: 3.0 Consensus size: 43
8369295 TCAACTTATA
*
8369305 TGAGTTTCAGATTAACCCTTATGGGTTTCAGTTCAGCTCTTT-
1 TGAGCTTCAGATTAACCCTTATGGGTTTCAGTTCAGCTCTTTC
* * *
8369347 TGAGCTTCAGTTTAACCCTAATGGGTTTCAGTTTAGCT-TTTC
1 TGAGCTTCAGATTAACCCTTATGGGTTTCAGTTCAGCTCTTTC
* * *
8369389 TGAGCTTTAGATTAACCCTTATGAGTTTCCGTTCAGCTCTT
1 TGAGCTTCAGATTAACCCTTATGGGTTTCAGTTCAGCTCTT
8369430 ATGGGTTTCC
Statistics
Matches: 71, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
41 3 0.04
42 66 0.93
43 2 0.03
ACGTcount: A:0.19, C:0.20, G:0.18, T:0.42
Consensus pattern (43 bp):
TGAGCTTCAGATTAACCCTTATGGGTTTCAGTTCAGCTCTTTC
Found at i:8369430 original size:21 final size:21
Alignment explanation
Indices: 8369406--8369465 Score: 86
Period size: 21 Copynumber: 2.9 Consensus size: 21
8369396 TAGATTAACC
8369406 CTTATGAGTTTCCGTTCAGCT
1 CTTATGAGTTTCCGTTCAGCT
*
8369427 CTTATGGGTTTCCGTTCAGCT
1 CTTATGAGTTTCCGTTCAGCT
*
8369448 CCTATGAGCTTT-CGTTCA
1 CTTATGAG-TTTCCGTTCA
8369466 ACATTTAAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
21 32 0.91
22 3 0.09
ACGTcount: A:0.13, C:0.25, G:0.20, T:0.42
Consensus pattern (21 bp):
CTTATGAGTTTCCGTTCAGCT
Found at i:8380242 original size:16 final size:15
Alignment explanation
Indices: 8380221--8380251 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
8380211 TAGTAAAAAT
8380221 ATAATTTATTATTTTA
1 ATAATTTA-TATTTTA
8380237 ATAATTTATATTTTA
1 ATAATTTATATTTTA
8380252 TATTTTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
ATAATTTATATTTTA
Found at i:8384194 original size:18 final size:18
Alignment explanation
Indices: 8384171--8384205 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
8384161 CCATAGCCAC
8384171 CTTCAC-CAATCACATTCT
1 CTTCACACAATC-CATTCT
8384189 CTTCACACAATCCATTC
1 CTTCACACAATCCATTC
8384206 GTAGCTAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.29, C:0.40, G:0.00, T:0.31
Consensus pattern (18 bp):
CTTCACACAATCCATTCT
Found at i:8386799 original size:34 final size:35
Alignment explanation
Indices: 8386755--8386821 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
8386745 CAGTAAAATG
**
8386755 TTTTCCGTAAAATGATTT-CTGGAAAATATTTTAC
1 TTTTCCGTAAAATGATTTACTAAAAAATATTTTAC
*
8386789 TTTTCTGTAAAATGATTTACTAAAAAATATTTT
1 TTTTCCGTAAAATGATTTACTAAAAAATATTTT
8386822 CTGCTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.36, C:0.09, G:0.09, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTAAAAAATATTTTAC
Found at i:8395194 original size:11 final size:11
Alignment explanation
Indices: 8395171--8395201 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
8395161 GTATTTTATA
8395171 AAAATAATA-C
1 AAAATAATATC
8395181 AAAATAATATC
1 AAAATAATATC
8395192 AAAATAATAT
1 AAAATAATAT
8395202 ATAAAAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (11 bp):
AAAATAATATC
Found at i:8395889 original size:155 final size:153
Alignment explanation
Indices: 8395317--8396131 Score: 1126
Period size: 153 Copynumber: 5.3 Consensus size: 153
8395307 CAATTGTTCG
* *
8395317 TATTTCGGCTC-TTTATTCGTATTTTTTTCTC-GAATTTTATTACTTTTAAAAAATATACTATTT
1 TATTTCGGC-CATTTGTTCGTATTTTTTTCCCAG-ATTTTATTACTTTTAAAAAATATACTATTT
* *
8395380 TGTAATTTTATTATTTTACATTATTTTAGTACATTGTGTTTGAAATGTATTAATTTAGTGTGTTT
64 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTT
* *
8395445 TTTAAATAAA-TTAAAAAAAAATCT
129 TTTAAATAAATTTATAAAAAACTCT
* * *
8395469 TATTTCAGCTC-TTTGTTCGTATTTTTTTCCTAGGATTTTATTTCTTTTAAAAAATATACTATTT
1 TATTTCGGC-CATTTGTTCGTATTTTTTTCCCA-GATTTTATTACTTTTAAAAAATATACTATTT
* *
8395533 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTTATTTAGTGTGTCT
64 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTT
** *
8395598 TTTATTTAAATTTTTAAAAAAACTCT
129 TTTAAATAAATTTAT-AAAAAACTCT
* *
8395624 TATTTCGGCCATTTGTTC--ATTTTTTTCCGA-ATTTTATTACTTTTAATAAAAATATATTATTT
1 TATTTCGGCCATTTGTTCGTATTTTTTTCCCAGATTTTATTACTTTT-A-AAAAATATACTATTT
* *
8395686 T-TGTATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTT
64 TCT-AATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTT
* *
8395750 TTTTAAATAAATTTTTAAAAAACCCT
128 TTTTAAATAAATTTATAAAAAACTCT
* *
8395776 TATTTCGGCCATTTGTTCGTATTTTTTTCCCAGATTTTATTACTTTCAATAAGAATATATTATTT
1 TATTTCGGCCATTTGTTCGTATTTTTTTCCCAGATTTTATTACTTTTAA-AA-AATATACTATTT
* *
8395841 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGCTTGAAATGTATTAATTTACTGTGTTT
64 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTT
*
8395906 TTTAAATAAATTTAGTAAAAAACCCT
129 TTTAAATAAATTTA-TAAAAAACTCT
* * * *
8395932 TATTTCGGCCCTTTGTTCATATTTTTTTTCCAGATTTTATTAC-TTTAAAAAATATAATATTTTC
1 TATTTCGGCCATTTGTTCGTATTTTTTTCCCAGATTTTATTACTTTTAAAAAATATACTATTTTC
* *
8395996 TAAATTTTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTCATTTAGTGTGTTTT
66 T-AATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTTT
* *
8396061 TTAAATAAATTTAAAAAAAAACTAT
130 TTAAATAAATTT-ATAAAAAACTCT
* * *
8396086 TATTTCGGCCATTTGTTCGCATTTTTTTACCGGATTTTATTACTTT
1 TATTTCGGCCATTTGTTCGTATTTTTTTCCCAGATTTTATTACTTT
8396132 CAATAAAAAA
Statistics
Matches: 598, Mismatches: 47, Indels: 33
0.88 0.07 0.05
Matches are distributed among these distances:
151 13 0.02
152 56 0.09
153 210 0.35
154 137 0.23
155 130 0.22
156 52 0.09
ACGTcount: A:0.30, C:0.09, G:0.08, T:0.53
Consensus pattern (153 bp):
TATTTCGGCCATTTGTTCGTATTTTTTTCCCAGATTTTATTACTTTTAAAAAATATACTATTTTC
TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTTTT
TAAATAAATTTATAAAAAACTCT
Found at i:8396443 original size:40 final size:40
Alignment explanation
Indices: 8396399--8396474 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
8396389 GCGTTTGGAT
** *
8396399 AAAAAACGCCGTTAAAAATCGAGCATTAGCGGCGCTTTAC
1 AAAAAACGCCGCCAAAAATCAAGCATTAGCGGCGCTTTAC
*
8396439 AAAAAACGCCGCCAAAGATCAAGCATTAGCGGCGCT
1 AAAAAACGCCGCCAAAAATCAAGCATTAGCGGCGCT
8396475 ACTAAAAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.38, C:0.25, G:0.21, T:0.16
Consensus pattern (40 bp):
AAAAAACGCCGCCAAAAATCAAGCATTAGCGGCGCTTTAC
Found at i:8396689 original size:41 final size:40
Alignment explanation
Indices: 8396539--8396693 Score: 193
Period size: 41 Copynumber: 3.8 Consensus size: 40
8396529 CGACCTTTCG
*
8396539 GGGCTTTAGCGGCATTTTTAGAGAAGCGCCGCTAATGCTC
1 GGGCTTTAGCGGCGTTTTTAGAGAAGCGCCGCTAATGCTC
* * * *
8396579 TGGTCTTTAACGGTGTTTTTGGAGAAGCGCCGCTAATGCTTC
1 -GGGCTTTAGCGGCGTTTTTAGAGAAGCGCCGCTAATGC-TC
* *
8396621 GGGCTTTAGCGGCGTTTTTGGAGAAGCGCCGCTAGTGCTC
1 GGGCTTTAGCGGCGTTTTTAGAGAAGCGCCGCTAATGCTC
* * *
8396661 AGGGATTTAGCGGCGTTTTTAAAAAAGCGCCGC
1 -GGGCTTTAGCGGCGTTTTTAGAGAAGCGCCGC
8396694 AAAAGCATTT
Statistics
Matches: 99, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
40 2 0.02
41 95 0.96
42 2 0.02
ACGTcount: A:0.19, C:0.21, G:0.32, T:0.29
Consensus pattern (40 bp):
GGGCTTTAGCGGCGTTTTTAGAGAAGCGCCGCTAATGCTC
Found at i:8397365 original size:7 final size:7
Alignment explanation
Indices: 8397339--8397407 Score: 57
Period size: 7 Copynumber: 9.7 Consensus size: 7
8397329 TATTAAATAA
8397339 GGTTCAGG
1 GGTT-AGG
*
8397347 GGTTAGT
1 GGTTAGG
*
8397354 AGTTAGG
1 GGTTAGG
8397361 GGTTAGG
1 GGTTAGG
* *
8397368 GGTTTGT
1 GGTTAGG
8397375 GGTTAGG
1 GGTTAGG
*
8397382 GCTTAGG
1 GGTTAGG
*
8397389 GCTTAGG
1 GGTTAGG
* *
8397396 GCTTAGA
1 GGTTAGG
8397403 GGTTA
1 GGTTA
8397408 AGAGTTAGTA
Statistics
Matches: 50, Mismatches: 11, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
7 46 0.92
8 4 0.08
ACGTcount: A:0.16, C:0.06, G:0.45, T:0.33
Consensus pattern (7 bp):
GGTTAGG
Found at i:8397368 original size:21 final size:21
Alignment explanation
Indices: 8397339--8397394 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
8397329 TATTAAATAA
8397339 GGTTCAGGGGTTAGTAGTTAGG
1 GGTT-AGGGGTTAGTAGTTAGG
* *
8397361 GGTTAGGGGTTTGTGGTTAGG
1 GGTTAGGGGTTAGTAGTTAGG
* *
8397382 GCTTAGGGCTTAG
1 GGTTAGGGGTTAG
8397395 GGCTTAGAGG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 25 0.86
22 4 0.14
ACGTcount: A:0.14, C:0.05, G:0.46, T:0.34
Consensus pattern (21 bp):
GGTTAGGGGTTAGTAGTTAGG
Found at i:8398699 original size:16 final size:17
Alignment explanation
Indices: 8398672--8398709 Score: 69
Period size: 16 Copynumber: 2.3 Consensus size: 17
8398662 TAGGTTTTTA
8398672 TTTCTATTTGGGGTTCT
1 TTTCTATTTGGGGTTCT
8398689 TTTCT-TTTGGGGTTCT
1 TTTCTATTTGGGGTTCT
8398705 TTTCT
1 TTTCT
8398710 GGGTTTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.03, C:0.13, G:0.21, T:0.63
Consensus pattern (17 bp):
TTTCTATTTGGGGTTCT
Found at i:8401996 original size:129 final size:129
Alignment explanation
Indices: 8401759--8402246 Score: 620
Period size: 129 Copynumber: 3.8 Consensus size: 129
8401749 TACCAAGATT
* * * **
8401759 TGATAACATGTAAGACCATGTTTGGGACATTGGCATTGTACTGTGATTACGTATAAGACTATGTC
1 TGATAACATATAAGACCATGTTTGGGACATTGGCATCGTAATGTGATTACGTATAAGACCCTGTC
* * * ** *** * *
8401824 TGGGACATTGGCATCGTTATATAATTTCGCATAAGACTC-TGTCTGGGACAGTGGCATCGATA-T
66 TGGGACAGTGGCATCGATATGTAATAACATGTAAGA-TCATGTCTGGGACATTGGCATTG-TACT
8401887 G
129 G
* * *
8401888 TGATAACATGTAAGACCATGTTTGGGATATTGGCATTGTAATGTGATTACGTATAAGACCCTGTC
1 TGATAACATATAAGACCATGTTTGGGACATTGGCATCGTAATGTGATTACGTATAAGACCCTGTC
* *
8401953 TGGGACGGTGGCATCGATATGTGATAACATGTAAGATCATGTCTGGGACATTGGCATTGTACTG
66 TGGGACAGTGGCATCGATATGTAATAACATGTAAGATCATGTCTGGGACATTGGCATTGTACTG
* * * * * * *
8402017 TGATTACGTATAAGACCATGTCTGAGACATTGGCATCGTTATTTGATTTCGTATAAGACCCTGTC
1 TGATAACATATAAGACCATGTTTGGGACATTGGCATCGTAATGTGATTACGTATAAGACCCTGTC
* * *
8402082 TGGGACAGTGGCATCGATATGTGATAACATGTAAGACCATGTTTGGGACATTGGCATTGTACTG
66 TGGGACAGTGGCATCGATATGTAATAACATGTAAGATCATGTCTGGGACATTGGCATTGTACTG
* * * * * *
8402146 TGATTACGTATAAGACCATGTTTGGGACATTGACATCGTTATATGATTTCGTATAAGACCCTGTC
1 TGATAACATATAAGACCATGTTTGGGACATTGGCATCGTAATGTGATTACGTATAAGACCCTGTC
8402211 TGGGACAGTGGCATCGATATGTAATAACATGTAAGA
66 TGGGACAGTGGCATCGATATGTAATAACATGTAAGA
8402247 ACATATTTGG
Statistics
Matches: 323, Mismatches: 34, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
128 4 0.01
129 319 0.99
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (129 bp):
TGATAACATATAAGACCATGTTTGGGACATTGGCATCGTAATGTGATTACGTATAAGACCCTGTC
TGGGACAGTGGCATCGATATGTAATAACATGTAAGATCATGTCTGGGACATTGGCATTGTACTG
Found at i:8402258 original size:43 final size:43
Alignment explanation
Indices: 8401769--8402232 Score: 479
Period size: 43 Copynumber: 10.8 Consensus size: 43
8401759 TGATAACATG
* *
8401769 TAAGACCATGTTTGGGACATTGGCATTG-TACTGTGATTACGTA
1 TAAGACCATGTCTGGGACATTGGCATCGATA-TGTGATTACGTA
* * * * * *
8401812 TAAGACTATGTCTGGGACATTGGCATCGTTATATAATTTCGCA
1 TAAGACCATGTCTGGGACATTGGCATCGATATGTGATTACGTA
* * * *
8401855 TAAGACTC-TGTCTGGGACAGTGGCATCGATATGTGATAACATG
1 TAAGAC-CATGTCTGGGACATTGGCATCGATATGTGATTACGTA
* * *
8401898 TAAGACCATGTTTGGGATATTGGCATTG-TAATGTGATTACGTA
1 TAAGACCATGTCTGGGACATTGGCATCGAT-ATGTGATTACGTA
* ** * * *
8401941 TAAGACCCTGTCTGGGACGGTGGCATCGATATGTGATAACATG
1 TAAGACCATGTCTGGGACATTGGCATCGATATGTGATTACGTA
* *
8401984 TAAGATCATGTCTGGGACATTGGCATTG-TACTGTGATTACGTA
1 TAAGACCATGTCTGGGACATTGGCATCGATA-TGTGATTACGTA
* * * *
8402027 TAAGACCATGTCTGAGACATTGGCATCGTTATTTGATTTCGTA
1 TAAGACCATGTCTGGGACATTGGCATCGATATGTGATTACGTA
* * * * *
8402070 TAAGACCCTGTCTGGGACAGTGGCATCGATATGTGATAACATG
1 TAAGACCATGTCTGGGACATTGGCATCGATATGTGATTACGTA
* *
8402113 TAAGACCATGTTTGGGACATTGGCATTG-TACTGTGATTACGTA
1 TAAGACCATGTCTGGGACATTGGCATCGATA-TGTGATTACGTA
* * * * *
8402156 TAAGACCATGTTTGGGACATTGACATCGTTATATGATTTCGTA
1 TAAGACCATGTCTGGGACATTGGCATCGATATGTGATTACGTA
* *
8402199 TAAGACCCTGTCTGGGACAGTGGCATCGATATGT
1 TAAGACCATGTCTGGGACATTGGCATCGATATGT
8402233 AATAACATGT
Statistics
Matches: 340, Mismatches: 72, Indels: 18
0.79 0.17 0.04
Matches are distributed among these distances:
42 6 0.02
43 327 0.96
44 7 0.02
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.33
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACATTGGCATCGATATGTGATTACGTA
Found at i:8405894 original size:27 final size:27
Alignment explanation
Indices: 8405864--8405919 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
8405854 AATTTCGAGG
*
8405864 TTTACAATTTT-TAATTTTTATTAATTA
1 TTTAC-ATTTTCTAACTTTTATTAATTA
* *
8405891 TTTACGTTTTCTCACTTTTATTAATTA
1 TTTACATTTTCTAACTTTTATTAATTA
8405918 TT
1 TT
8405920 ATTATTTAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.27, C:0.09, G:0.02, T:0.62
Consensus pattern (27 bp):
TTTACATTTTCTAACTTTTATTAATTA
Found at i:8406179 original size:43 final size:43
Alignment explanation
Indices: 8406125--8406335 Score: 228
Period size: 43 Copynumber: 4.8 Consensus size: 43
8406115 TTTTTACGAG
* * * *
8406125 AAGCGTCGCTAAAGGT-TTGTTCTATAGCGGCGTTTATGATAAA
1 AAGCGCCGCTAAAGGTCATGGTCTATAGCGGCGTTTATG-GAAA
* * *
8406168 AAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGGCGTT-TGTGACAA
1 AAGCGCCGCTAAAGGTCATGGTCTATAGCGGC-G-TTTATG-GA-AA
* * * *
8406214 AAGTGCCGCTAAAAGTCATGGTCTATAGCGGCGTTTGTGGGAA
1 AAGCGCCGCTAAAGGTCATGGTCTATAGCGGCGTTTATGGAAA
*
8406257 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTATGGAAA
1 AAGCGCCGCTAAAGGTCATGGTCTATAGCGGCGTTTATGGAAA
** *
8406300 AAGCGCCGCTAAAAATCTTGGTCTATAGCGGCGTTT
1 AAGCGCCGCTAAAGGTCATGGTCTATAGCGGCGTTT
8406336 GTTTCTAAAA
Statistics
Matches: 142, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
43 87 0.61
44 16 0.11
45 7 0.05
46 32 0.23
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (43 bp):
AAGCGCCGCTAAAGGTCATGGTCTATAGCGGCGTTTATGGAAA
Found at i:8406226 original size:89 final size:86
Alignment explanation
Indices: 8406125--8406335 Score: 264
Period size: 89 Copynumber: 2.4 Consensus size: 86
8406115 TTTTTACGAG
* * * * *
8406125 AAGCGTCGCTAAAGGT-TTGTTCTATAGCGGCGTTTATGATAAAAAGCGCCGCTAAAGGTCATGT
1 AAGCGCCGCTAAAAGTCTTGGTCTATAGCGGCGTTTATG-GAAAAAGCGCCGCTAAAGGTCATGG
*
8406189 TCTTTAGCGGCGGCGTT-TGTGACAA
65 TCTTTAGCGGC-G-TTTATG-GA-AA
* * * *
8406214 AAGTGCCGCTAAAAGTCATGGTCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGT
1 AAGCGCCGCTAAAAGTCTTGGTCTATAGCGGCGTTTATGGAAAAAGCGCCGCTAAAGGTCATGGT
8406279 CTTTAGCGGCGTTTATGGAAA
66 CTTTAGCGGCGTTTATGGAAA
*
8406300 AAGCGCCGCTAAAAATCTTGGTCTATAGCGGCGTTT
1 AAGCGCCGCTAAAAGTCTTGGTCTATAGCGGCGTTT
8406336 GTTTCTAAAA
Statistics
Matches: 107, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
86 35 0.33
87 4 0.04
88 3 0.03
89 46 0.43
90 19 0.18
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (86 bp):
AAGCGCCGCTAAAAGTCTTGGTCTATAGCGGCGTTTATGGAAAAAGCGCCGCTAAAGGTCATGGT
CTTTAGCGGCGTTTATGGAAA
Found at i:8406327 original size:86 final size:90
Alignment explanation
Indices: 8406145--8406337 Score: 270
Period size: 86 Copynumber: 2.2 Consensus size: 90
8406135 AAAGGTTTGT
* * *
8406145 TCTATAGCGGCGTTTATGATAAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGGCGTTTGTG
1 TCTATAGCGGCGTTTGTGAGAAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGGCGTTTGTG
* *
8406210 ACAAAAGTGCCGCTAAAAGTCATGG
66 ACAAAAGCGCCGCTAAAAATCATGG
* *
8406235 TCTATAGCGGCGTTTGTG-GGAAAAGCGCCGCTAAAGGTCATGGTCTTTA---GCGGCGTTTATG
1 TCTATAGCGGCGTTTGTGAGAAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGGCGTTTGT-
*
8406296 GA-AAAAGCGCCGCTAAAAATCTTGG
65 GACAAAAGCGCCGCTAAAAATCATGG
8406321 TCTATAGCGGCGTTTGT
1 TCTATAGCGGCGTTTGT
8406338 TTCTAAAAGC
Statistics
Matches: 94, Mismatches: 8, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
86 47 0.50
87 2 0.02
89 28 0.30
90 17 0.18
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (90 bp):
TCTATAGCGGCGTTTGTGAGAAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGGCGTTTGTG
ACAAAAGCGCCGCTAAAAATCATGG
Found at i:8423397 original size:12 final size:12
Alignment explanation
Indices: 8423380--8423404 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8423370 GTGGATTCCT
8423380 TTCGGAAAAATA
1 TTCGGAAAAATA
8423392 TTCGGAAAAATA
1 TTCGGAAAAATA
8423404 T
1 T
8423405 AAGCGAGGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.16, T:0.28
Consensus pattern (12 bp):
TTCGGAAAAATA
Found at i:8429721 original size:29 final size:29
Alignment explanation
Indices: 8429689--8429746 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
8429679 CACCTTGACA
* *
8429689 TTTAAATATAAATGACTAAAACGTAACAT
1 TTTAAACATAAATAACTAAAACGTAACAT
*
8429718 TTTAAACATAAATAACTAAAATGTAACAT
1 TTTAAACATAAATAACTAAAACGTAACAT
8429747 GAGACAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.53, C:0.10, G:0.05, T:0.31
Consensus pattern (29 bp):
TTTAAACATAAATAACTAAAACGTAACAT
Found at i:8438977 original size:6 final size:6
Alignment explanation
Indices: 8438968--8438995 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
8438958 ATTTTAAATT
8438968 TAATGA TAATGA TAATGA TAATGA TAAT
1 TAATGA TAATGA TAATGA TAATGA TAAT
8438996 TTTTAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (6 bp):
TAATGA
Found at i:8444066 original size:47 final size:47
Alignment explanation
Indices: 8443997--8444110 Score: 126
Period size: 47 Copynumber: 2.4 Consensus size: 47
8443987 ATTGACGGAA
* *
8443997 AAGACCATGGTT-GGATCATGACAAT-A-TGTGATATGTGATTTCCGTAT
1 AAGACCATGGTTGGGCT-ATGAC-ATCAGTGTGATATGTG-CTTCCGTAT
* * *
8444044 AAGACCATAGTTGGGCTATGACATCAGTGTGATATGTGCTTCTGTGT
1 AAGACCATGGTTGGGCTATGACATCAGTGTGATATGTGCTTCCGTAT
*
8444091 AAGAACATGGTTGGGCTATG
1 AAGACCATGGTTGGGCTATG
8444111 GCTTTGGTGT
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
46 2 0.04
47 41 0.72
48 14 0.25
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.32
Consensus pattern (47 bp):
AAGACCATGGTTGGGCTATGACATCAGTGTGATATGTGCTTCCGTAT
Found at i:8444121 original size:47 final size:50
Alignment explanation
Indices: 8444023--8444131 Score: 116
Period size: 47 Copynumber: 2.2 Consensus size: 50
8444013 CATGACAATA
* *
8444023 TGTGATATGTGATTTCCGTATAAGACCATAGTTGGGCTATGACATC-A-G
1 TGTGATATGTGACTTCCGTATAAGAACATAGTTGGGCTATGACATCGATG
* * * * * * *
8444071 TGTGATATGTG-CTTCTGTGTAAGAACATGGTTGGGCTATGGCTTTGGTG
1 TGTGATATGTGACTTCCGTATAAGAACATAGTTGGGCTATGACATCGATG
8444120 TGTGATATGTGA
1 TGTGATATGTGA
8444132 TTATATGCAA
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
47 26 0.53
48 11 0.22
49 12 0.24
ACGTcount: A:0.22, C:0.11, G:0.30, T:0.37
Consensus pattern (50 bp):
TGTGATATGTGACTTCCGTATAAGAACATAGTTGGGCTATGACATCGATG
Found at i:8444702 original size:25 final size:25
Alignment explanation
Indices: 8444674--8444735 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
8444664 ACCTTAGCGC
*
8444674 GCTCTCTGATTATTAGCA-GATCAGT
1 GCTCTCTGATTATTAACACG-TCAGT
*
8444699 GCTCTCTGATTATTAACACGTTAGT
1 GCTCTCTGATTATTAACACGTCAGT
*
8444724 GCTCTCCGATTA
1 GCTCTCTGATTA
8444736 GCACATCTGT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
25 32 0.97
26 1 0.03
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.37
Consensus pattern (25 bp):
GCTCTCTGATTATTAACACGTCAGT
Found at i:8444769 original size:22 final size:23
Alignment explanation
Indices: 8444696--8444776 Score: 78
Period size: 22 Copynumber: 3.5 Consensus size: 23
8444686 TTAGCAGATC
*
8444696 AGTGCTCTCTGATTATTAACACGTT
1 AGTGCTCTCTG--TATTAACACTTT
* * *
8444721 AGTGCTCTCCG-ATTAGCACATCT
1 AGTGCTCTCTGTATTAACAC-TTT
8444744 -GTGCTCTCTGTA-TAACACTTT
1 AGTGCTCTCTGTATTAACACTTT
8444765 AGTGCTCTCTGT
1 AGTGCTCTCTGT
8444777 TCATTAGTGC
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
21 2 0.04
22 32 0.70
23 2 0.04
25 10 0.22
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (23 bp):
AGTGCTCTCTGTATTAACACTTT
Found at i:8444783 original size:47 final size:48
Alignment explanation
Indices: 8444674--8444783 Score: 129
Period size: 47 Copynumber: 2.3 Consensus size: 48
8444664 ACCTTAGCGC
*
8444674 GCTCTCTGATTATTAGCAGATCAGTGCTCTCTGATTATTAACACGTTAGT
1 GCTCTCTG-TTATTAGCACATCAGTGCTCTCTGA-TATTAACACGTTAGT
* * *
8444724 GCTCTCCG--ATTAGCACATCTGTGCTCTCTG-TA-TAACACTTTAGT
1 GCTCTCTGTTATTAGCACATCAGTGCTCTCTGATATTAACACGTTAGT
8444768 GCTCTCTGTTCATTAG
1 GCTCTCTGTT-ATTAG
8444784 TGCATAATAA
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
44 18 0.35
45 2 0.04
47 25 0.48
50 7 0.13
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (48 bp):
GCTCTCTGTTATTAGCACATCAGTGCTCTCTGATATTAACACGTTAGT
Found at i:8447940 original size:28 final size:28
Alignment explanation
Indices: 8447905--8447974 Score: 133
Period size: 28 Copynumber: 2.5 Consensus size: 28
8447895 ATAAAAAATA
8447905 ACCAAAATATTATAACTTTTTTTTATTT
1 ACCAAAATATTATAACTTTTTTTTATTT
8447933 ACCAAAATATTATAACTTTTTTTTATTT
1 ACCAAAATATTATAACTTTTTTTTATTT
8447961 ACCAAAATA-TATAA
1 ACCAAAATATTATAA
8447975 AAAAAAAACA
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 5 0.12
28 37 0.88
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.47
Consensus pattern (28 bp):
ACCAAAATATTATAACTTTTTTTTATTT
Found at i:8447996 original size:20 final size:20
Alignment explanation
Indices: 8447963--8448001 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8447953 TTTTATTTAC
* *
8447963 CAAAATATATAAAAAAAAAA
1 CAAAAAATAGAAAAAAAAAA
8447983 CAAAAAATAGAAAAAAAAA
1 CAAAAAATAGAAAAAAAAA
8448002 CTTGACAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.82, C:0.05, G:0.03, T:0.10
Consensus pattern (20 bp):
CAAAAAATAGAAAAAAAAAA
Found at i:8448061 original size:27 final size:27
Alignment explanation
Indices: 8448031--8448109 Score: 122
Period size: 27 Copynumber: 2.9 Consensus size: 27
8448021 GGCCAATCAC
*
8448031 ATTGGCGGCACCAAAGGTGCCAAAGAG
1 ATTGGCGGCACCAATGGTGCCAAAGAG
* *
8448058 ATTGGCGGCACCAATGGTGCCAATGTG
1 ATTGGCGGCACCAATGGTGCCAAAGAG
*
8448085 ATTGGTGGCACCAATGGTGCCAAAG
1 ATTGGCGGCACCAATGGTGCCAAAG
8448110 GACTAAAATG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.28, C:0.22, G:0.33, T:0.18
Consensus pattern (27 bp):
ATTGGCGGCACCAATGGTGCCAAAGAG
Found at i:8448439 original size:19 final size:19
Alignment explanation
Indices: 8448415--8448480 Score: 91
Period size: 19 Copynumber: 3.5 Consensus size: 19
8448405 ATTAAAATAG
8448415 TTTAATTTAATAACTCTAT
1 TTTAATTTAATAACTCTAT
* *
8448434 TTTAATGTAATAA-ACTAT
1 TTTAATTTAATAACTCTAT
8448452 TCTT-ATTTAATAACTCTAT
1 T-TTAATTTAATAACTCTAT
8448471 TTTAATTTAA
1 TTTAATTTAA
8448481 AAAAATTAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
18 15 0.38
19 25 0.62
ACGTcount: A:0.38, C:0.09, G:0.02, T:0.52
Consensus pattern (19 bp):
TTTAATTTAATAACTCTAT
Found at i:8448746 original size:18 final size:19
Alignment explanation
Indices: 8448707--8448803 Score: 117
Period size: 18 Copynumber: 5.2 Consensus size: 19
8448697 ATTTTATATT
8448707 TTAAATGAAAATAGAGTTA
1 TTAAATGAAAATAGAGTTA
* *
8448726 TTAAATGAGAATAG-TTTA
1 TTAAATGAAAATAGAGTTA
*
8448744 TTAAATTAAAATATGAGTTA
1 TTAAATGAAAATA-GAGTTA
* *
8448764 TTAAATGAGAATAG-TTTA
1 TTAAATGAAAATAGAGTTA
*
8448782 TTAAATTAAAATAGAGTTA
1 TTAAATGAAAATAGAGTTA
8448801 TTA
1 TTA
8448804 CTTAATTAGA
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
18 29 0.45
19 21 0.33
20 14 0.22
ACGTcount: A:0.48, C:0.00, G:0.13, T:0.38
Consensus pattern (19 bp):
TTAAATGAAAATAGAGTTA
Found at i:8448769 original size:38 final size:37
Alignment explanation
Indices: 8448707--8448803 Score: 176
Period size: 38 Copynumber: 2.6 Consensus size: 37
8448697 ATTTTATATT
*
8448707 TTAAATGAAAATAGAGTTATTAAATGAGAATAGTTTA
1 TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
8448744 TTAAATTAAAATATGAGTTATTAAATGAGAATAGTTTA
1 TTAAATTAAAATA-GAGTTATTAAATGAGAATAGTTTA
8448782 TTAAATTAAAATAGAGTTATTA
1 TTAAATTAAAATAGAGTTATTA
8448804 CTTAATTAGA
Statistics
Matches: 58, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
37 21 0.36
38 37 0.64
ACGTcount: A:0.48, C:0.00, G:0.13, T:0.38
Consensus pattern (37 bp):
TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
Found at i:8449458 original size:27 final size:27
Alignment explanation
Indices: 8449377--8449459 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 27
8449367 TAGTCCTTTC
* *
8449377 GCACCATTGGTGCTGCCAATCACATTG
1 GCACCATTGGTGCCGCCAATCTCATTG
*
8449404 GCACCATTGGTGCCGCCAATCTCTTTG
1 GCACCATTGGTGCCGCCAATCTCATTG
* * *
8449431 GCACCTTTGGTGCCGCCAATGTGATTG
1 GCACCATTGGTGCCGCCAATCTCATTG
8449458 GC
1 GC
8449460 CTGATCAGGC
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.17, C:0.30, G:0.25, T:0.28
Consensus pattern (27 bp):
GCACCATTGGTGCCGCCAATCTCATTG
Found at i:8449539 original size:26 final size:27
Alignment explanation
Indices: 8449510--8449572 Score: 119
Period size: 26 Copynumber: 2.4 Consensus size: 27
8449500 TTTTTTTAGT
8449510 ATATTTTGGTAAATAAAAAAA-TTATA
1 ATATTTTGGTAAATAAAAAAAGTTATA
8449536 ATATTTTGGTAAATAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAGTTATA
8449563 ATATTTTGGT
1 ATATTTTGGT
8449573 TATTTTTTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 21 0.58
27 15 0.42
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAAAAAGTTATA
Found at i:8457582 original size:25 final size:24
Alignment explanation
Indices: 8457542--8457610 Score: 66
Period size: 25 Copynumber: 2.8 Consensus size: 24
8457532 CCTATACGAG
* * *
8457542 CATATAATTGGGAAGCTCTTTTGATC
1 CATATAA-AGGGAAGCTCTGTT-AGC
8457568 CATATAAAGGGAAGCTCATGTTAGC
1 CATATAAAGGGAAGCTC-TGTTAGC
* *
8457593 CATGTAACGGGAAGCTCT
1 CATATAAAGGGAAGCTCT
8457611 AGAGAGCCAT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
24 1 0.03
25 26 0.70
26 10 0.27
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.29
Consensus pattern (24 bp):
CATATAAAGGGAAGCTCTGTTAGC
Found at i:8466100 original size:25 final size:25
Alignment explanation
Indices: 8466027--8466165 Score: 93
Period size: 25 Copynumber: 5.5 Consensus size: 25
8466017 AATTCATATT
*
8466027 CAGGAATGCTCATGTGAGCACATA-AA
1 CAGGAA-GCTCATATGAGC-CATATAA
* * *
8466053 CGGGAAGCTCTCTCTTGAGCCATATAA
1 CAGGAAGCTC-AT-ATGAGCCATATAA
*
8466080 CAGGAAGCTCATATGAGCCATGTAA
1 CAGGAAGCTCATATGAGCCATATAA
* * ** * **
8466105 CGGGAAGCTTATCCGGGCTGTATAA
1 CAGGAAGCTCATATGAGCCATATAA
* * *
8466130 CGGGAAGCTCATAAGAGCCATA-AT
1 CAGGAAGCTCATATGAGCCATATAA
8466154 CAGGAAGCTCAT
1 CAGGAAGCTCAT
8466166 GCTAGCCAAT
Statistics
Matches: 87, Mismatches: 23, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
24 12 0.14
25 48 0.55
26 11 0.13
27 16 0.18
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.21
Consensus pattern (25 bp):
CAGGAAGCTCATATGAGCCATATAA
Found at i:8466300 original size:26 final size:26
Alignment explanation
Indices: 8466271--8466320 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
8466261 GGAGAGCCAA
*
8466271 TAATCAGGAAGCTCACAAAGAGCCTT
1 TAATCAGGAAACTCACAAAGAGCCTT
** *
8466297 TAATTGGGAAACTCACGAAGAGCC
1 TAATCAGGAAACTCACAAAGAGCC
8466321 ATATATCAGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (26 bp):
TAATCAGGAAACTCACAAAGAGCCTT
Found at i:8485782 original size:14 final size:14
Alignment explanation
Indices: 8485755--8485792 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
8485745 TTTTAATTTA
* *
8485755 ATATGCAATCATAT
1 ATATGAAATTATAT
8485769 ATATGAAATTATAT
1 ATATGAAATTATAT
8485783 ATATGAAATT
1 ATATGAAATT
8485793 CTAATTGTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.47, C:0.05, G:0.08, T:0.39
Consensus pattern (14 bp):
ATATGAAATTATAT
Found at i:8489041 original size:100 final size:100
Alignment explanation
Indices: 8488865--8489050 Score: 309
Period size: 100 Copynumber: 1.9 Consensus size: 100
8488855 AATCACCCAG
* * *
8488865 CACTTATTACATGCTCAACTGTAACAACTGTGCATCAATGACGAGCAGTATTAAAGTTCCAAAAT
1 CACTTAATACATGCTCAACTGTAACAACTGAGCATCAATGACGAGCAGTATTAAACTTCCAAAAT
*
8488930 GTATTGCTAAATCCTAGTAAGCAAGTTAGCCAAGC
66 GTATTGATAAATCCTAGTAAGCAAGTTAGCCAAGC
* *
8488965 CACTTAATACATGCTCAACTGTAATAACTGAGCATCAGTGACGAGCAGTATTAAACTTCCAAAAT
1 CACTTAATACATGCTCAACTGTAACAACTGAGCATCAATGACGAGCAGTATTAAACTTCCAAAAT
*
8489030 GTATTGATAAATCTTAGTAAG
66 GTATTGATAAATCCTAGTAAG
8489051 TTAGCCAAGC
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 79 1.00
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (100 bp):
CACTTAATACATGCTCAACTGTAACAACTGAGCATCAATGACGAGCAGTATTAAACTTCCAAAAT
GTATTGATAAATCCTAGTAAGCAAGTTAGCCAAGC
Found at i:8496137 original size:14 final size:15
Alignment explanation
Indices: 8496104--8496135 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8496094 TATGCATGTA
*
8496104 AAATATAAAAGACAT
1 AAATAAAAAAGACAT
8496119 AAATAAAAAAGACAT
1 AAATAAAAAAGACAT
8496134 AA
1 AA
8496136 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.72, C:0.06, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATAAAAAAGACAT
Found at i:8496341 original size:28 final size:28
Alignment explanation
Indices: 8496309--8496365 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
8496299 TTTCAACATA
8496309 TCTTATCACATTACATTTACTTAATTAC
1 TCTTATCACATTACATTTACTTAATTAC
8496337 TCTTATCACATTACATTTACTTAATTAC
1 TCTTATCACATTACATTTACTTAATTAC
8496365 T
1 T
8496366 TTTCCTTGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.21, G:0.00, T:0.47
Consensus pattern (28 bp):
TCTTATCACATTACATTTACTTAATTAC
Found at i:8496349 original size:14 final size:15
Alignment explanation
Indices: 8496308--8496352 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
8496298 ATTTCAACAT
8496308 ATCTTATCACATTAC
1 ATCTTATCACATTAC
*
8496323 AT-TTACTTA-ATTAC
1 ATCTTA-TCACATTAC
8496337 -TCTTATCACATTAC
1 ATCTTATCACATTAC
8496351 AT
1 AT
8496353 TTACTTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 8
0.71 0.06 0.24
Matches are distributed among these distances:
13 3 0.12
14 16 0.67
15 5 0.21
ACGTcount: A:0.33, C:0.22, G:0.00, T:0.44
Consensus pattern (15 bp):
ATCTTATCACATTAC
Found at i:8496363 original size:14 final size:14
Alignment explanation
Indices: 8496318--8496364 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
8496308 ATCTTATCAC
8496318 ATTACATTTACTTA
1 ATTACATTTACTTA
*
8496332 ATTAC-TCTTA-TCA
1 ATTACAT-TTACTTA
8496345 CATTACATTTACTTA
1 -ATTACATTTACTTA
8496360 ATTAC
1 ATTAC
8496365 TTTTCCTTGC
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
13 3 0.11
14 21 0.78
15 3 0.11
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (14 bp):
ATTACATTTACTTA
Found at i:8496694 original size:32 final size:32
Alignment explanation
Indices: 8496653--8496731 Score: 97
Period size: 32 Copynumber: 2.5 Consensus size: 32
8496643 TTTTAACATT
*
8496653 ATATATCATCCACAAAAGA-CTAATCATCAATC
1 ATATCTCATCCACAAAAGATC-AATCATCAATC
* *
8496685 ATATCTCATCCACAAGAGATCAATCATCAATT
1 ATATCTCATCCACAAAAGATCAATCATCAATC
* *
8496717 ATATCCCGTCCACAA
1 ATATCTCATCCACAA
8496732 GGGGCTAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
32 40 0.98
33 1 0.02
ACGTcount: A:0.42, C:0.28, G:0.05, T:0.25
Consensus pattern (32 bp):
ATATCTCATCCACAAAAGATCAATCATCAATC
Found at i:8499453 original size:46 final size:46
Alignment explanation
Indices: 8499390--8499568 Score: 225
Period size: 46 Copynumber: 3.9 Consensus size: 46
8499380 AGTGTGGAAT
* * *
8499390 GTAGGTACGGTAATTCAGTAAAGAAAACCATACTGAGTTATGGAAC
1 GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTTATGAAAC
* * * *
8499436 GTAGGTATGGTGTTTCAGTGAAGAAAACTATACTGAGTTGTGAAAC
1 GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTTATGAAAC
** * *
8499482 GTAGGTATGGTATTTCAGTAACA-AAAGTCATACTGAGTTGTGAAAA
1 GTAGGTATGGTATTTCAGTAA-AGAAAACCATACTGAGTTATGAAAC
* *
8499528 GTAGGTATGATATTTCAGTGAAGAAAACCATACTGAGTTAT
1 GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTTAT
8499569 AGCATTGCAA
Statistics
Matches: 113, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
45 1 0.01
46 111 0.98
47 1 0.01
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.29
Consensus pattern (46 bp):
GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTTATGAAAC
Found at i:8499547 original size:92 final size:92
Alignment explanation
Indices: 8499390--8499566 Score: 248
Period size: 92 Copynumber: 1.9 Consensus size: 92
8499380 AGTGTGGAAT
* * * *
8499390 GTAGGTACGGTAATTCAGTAAAGAAAACCATACTGAGTTATGGAACGTAGGTATGGTGTTTCAGT
1 GTAGGTACGGTAATTCAGTAAAGAAAACCATACTGAGTTATGAAAAGTAGGTATGATATTTCAGT
*
8499455 GAAGAAAACTATACTGAGTTGTGAAAC
66 GAAGAAAACCATACTGAGTTGTGAAAC
* * ** *
8499482 GTAGGTATGGTATTTCAGTAACA-AAAGTCATACTGAGTTGTGAAAAGTAGGTATGATATTTCAG
1 GTAGGTACGGTAATTCAGTAA-AGAAAACCATACTGAGTTATGAAAAGTAGGTATGATATTTCAG
8499546 TGAAGAAAACCATACTGAGTT
65 TGAAGAAAACCATACTGAGTT
8499567 ATAGCATTGC
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
92 73 0.99
93 1 0.01
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.29
Consensus pattern (92 bp):
GTAGGTACGGTAATTCAGTAAAGAAAACCATACTGAGTTATGAAAAGTAGGTATGATATTTCAGT
GAAGAAAACCATACTGAGTTGTGAAAC
Found at i:8512683 original size:34 final size:33
Alignment explanation
Indices: 8512631--8512729 Score: 119
Period size: 33 Copynumber: 2.9 Consensus size: 33
8512621 TTAGGGTTTT
**
8512631 TTTTAAAAAAAATTAATTAAATTAGATTTTTAAGG-
1 TTTT-AAAAAAATTAATTAAATTAG-GGTTT-AGGA
*
8512666 TTTTAAATAAATTAATTAAATTAGGGTTTAGGA
1 TTTTAAAAAAATTAATTAAATTAGGGTTTAGGA
* *
8512699 TTTTAAAAAAAATAATTAAATTATGGTTTAG
1 TTTTAAAAAAATTAATTAAATTAGGGTTTAG
8512730 TTTTTTTTTT
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
32 3 0.05
33 31 0.54
34 19 0.33
35 4 0.07
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.42
Consensus pattern (33 bp):
TTTTAAAAAAATTAATTAAATTAGGGTTTAGGA
Found at i:8513173 original size:127 final size:126
Alignment explanation
Indices: 8512791--8513188 Score: 530
Period size: 127 Copynumber: 3.2 Consensus size: 126
8512781 AACTTTTGTT
* * * * * * * * ** *
8512791 TTTTTCTACCGTAGTTTTTGAAAAAGTAATTTTAAGAATACGGTTTTGAAAGGATAATGTAAAAA
1 TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGACGATTCTAAAAAAATAGTGTAAAAA
* * *
8512856 ATGCTTCAAGCAGGATGCACTG-CAGCAAAATTACTGAAAAAAGCTCCCACGTGGGCGCTC
66 ATGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGCAC
* * *
8512916 TTTTTCTACAGTAGTTCCTGAAAAAATGATTTTGAGAAGACGATTCTAAACAAATAGTGTAAAAA
1 TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGACGATTCTAAAAAAATAGTGTAAAAA
* * * *
8512981 ATGCTTCAAGCAGGATGCACTGTTAGCAAAATTACTGAAAAAAGTTCCTACGTGGATG-ATGT
66 ATGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGCA--C
* * *
8513043 TTTTTTTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGACGATTCTAAAAAAATAGTATCAAAA
1 TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGACGATTCTAAAAAAATAGTGTAAAAA
*
8513108 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGCAC
66 ATGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGCAC
*
8513169 TTTTTCTACAATAGTTCTTG
1 TTTTTCTACAGTAGTTCTTG
8513189 TTTGGCCTTA
Statistics
Matches: 235, Mismatches: 34, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
125 73 0.31
126 48 0.20
127 113 0.48
128 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (126 bp):
TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGACGATTCTAAAAAAATAGTGTAAAAA
ATGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGCAC
Found at i:8516244 original size:53 final size:53
Alignment explanation
Indices: 8516144--8516258 Score: 126
Period size: 54 Copynumber: 2.2 Consensus size: 53
8516134 GTTGCATTAT
***
8516144 TTCTATTTTATTAAAAATAAAAATATTAAAAATATTACCTTATTTAAAAGAAC
1 TTCTATTTTATTAAAAATAAAAATATTAAAAATATTAAAATATTTAAAAGAAC
* * *
8516197 TTCTATTTTATTAAAAATATAAAA-A-TAAATTAGTATTAAAATATTAAAAACAAC
1 TTCTATTTTATTAAAAATA-AAAATATTAAA--AATATTAAAATATTTAAAAGAAC
*
8516251 TTTTATTT
1 TTCTATTT
8516259 CTTTAAATGA
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
52 4 0.08
53 20 0.38
54 28 0.54
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (53 bp):
TTCTATTTTATTAAAAATAAAAATATTAAAAATATTAAAATATTTAAAAGAAC
Found at i:8516257 original size:24 final size:24
Alignment explanation
Indices: 8516201--8516257 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
8516191 AAGAACTTCT
*
8516201 ATTTTATTAAAAATATAAAAATAA
1 ATTTTATTAAAAATATAAAAACAA
*
8516225 ATTAGTATT-AAAATATTAAAAACAA
1 ATT-TTATTAAAAATA-TAAAAACAA
*
8516250 CTTTTATT
1 ATTTTATT
8516258 TCTTTAAATG
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
24 13 0.48
25 14 0.52
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (24 bp):
ATTTTATTAAAAATATAAAAACAA
Found at i:8516731 original size:18 final size:18
Alignment explanation
Indices: 8516678--8516733 Score: 94
Period size: 18 Copynumber: 3.1 Consensus size: 18
8516668 GGGAAAAGAA
*
8516678 ACATATAAGGGTTAGGAA
1 ACATATAAGGGTTAGGAT
8516696 ACATATAAGGGTTAGGAT
1 ACATATAAGGGTTAGGAT
*
8516714 ACATATAAGGGCTAGGAT
1 ACATATAAGGGTTAGGAT
8516732 AC
1 AC
8516734 GCACCTGGCA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.41, C:0.09, G:0.27, T:0.23
Consensus pattern (18 bp):
ACATATAAGGGTTAGGAT
Found at i:8518316 original size:20 final size:21
Alignment explanation
Indices: 8518284--8518326 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
8518274 GAAAATTAAT
*
8518284 AAAAATTACATAA-A-TGAAA
1 AAAAATTAAATAATATTGAAA
8518303 AAAAGATTAAATAATATTGAAA
1 AAAA-ATTAAATAATATTGAAA
8518325 AA
1 AA
8518327 TTAAAATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 8 0.40
21 1 0.05
22 7 0.35
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.23
Consensus pattern (21 bp):
AAAAATTAAATAATATTGAAA
Found at i:8518722 original size:18 final size:18
Alignment explanation
Indices: 8518694--8518738 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
8518684 AATCGTTCAT
*
8518694 CTAGGAAACATATAAGGG
1 CTAGGATACATATAAGGG
*
8518712 TTAGGATACATATAAGGG
1 CTAGGATACATATAAGGG
8518730 CTAGGATAC
1 CTAGGATAC
8518739 GCACCTGGCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.40, C:0.11, G:0.27, T:0.22
Consensus pattern (18 bp):
CTAGGATACATATAAGGG
Found at i:8520322 original size:22 final size:23
Alignment explanation
Indices: 8520288--8520331 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
8520278 AAAAATTAAT
*
8520288 AAAAATTACATAA-A-TGAAAAA
1 AAAAATTAAATAATATTGAAAAA
8520309 AAAAGATTAAATAATATTGAAAA
1 AAAA-ATTAAATAATATTGAAAA
8520332 TTTAAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 4 0.21
22 8 0.42
23 1 0.05
24 6 0.32
ACGTcount: A:0.68, C:0.02, G:0.07, T:0.23
Consensus pattern (23 bp):
AAAAATTAAATAATATTGAAAAA
Found at i:8521884 original size:31 final size:31
Alignment explanation
Indices: 8521837--8521909 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
8521827 ATAACTGCCT
* * **
8521837 AGTGACTTAAACAAAAATTTTTAAATAGTTC
1 AGTGACTCAAATAAAAACATTTAAATAGTTC
* *
8521868 AGTGACTCAAATAAAAACATTTGAATAGTTT
1 AGTGACTCAAATAAAAACATTTAAATAGTTC
8521899 AGTGAC-CAAAT
1 AGTGACTCAAAT
8521910 TGTAACCTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
30 5 0.14
31 31 0.86
ACGTcount: A:0.45, C:0.11, G:0.12, T:0.32
Consensus pattern (31 bp):
AGTGACTCAAATAAAAACATTTAAATAGTTC
Found at i:8534651 original size:17 final size:18
Alignment explanation
Indices: 8534614--8534650 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
8534604 GTATATATTC
8534614 TTTAGATTTTTTTAGAAT
1 TTTAGATTTTTTTAGAAT
8534632 TTTA-ATTTTTTTA-AAT
1 TTTAGATTTTTTTAGAAT
8534648 TTT
1 TTT
8534651 TTAAAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.32
17 9 0.47
18 4 0.21
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTAGATTTTTTTAGAAT
Found at i:8535049 original size:31 final size:29
Alignment explanation
Indices: 8534979--8535050 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 29
8534969 TTTTAGAGGT
*
8534979 TGCTCATATAAGGGCTAAACATTTCAAAA
1 TGCTCAAATAAGGGCTAAACATTTCAAAA
* *
8535008 TGATCAAATAAGGGCCT-AACATTTGCAGAAG
1 TGCTCAAATAAGGG-CTAAACATTT-CA-AAA
8535039 TGCTCAAATAAG
1 TGCTCAAATAAG
8535051 AGTTTTTCAC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
29 19 0.53
30 4 0.11
31 13 0.36
ACGTcount: A:0.40, C:0.17, G:0.18, T:0.25
Consensus pattern (29 bp):
TGCTCAAATAAGGGCTAAACATTTCAAAA
Found at i:8537212 original size:21 final size:22
Alignment explanation
Indices: 8537188--8537232 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
8537178 TATTTATAAA
8537188 TTTTAGAATTTTATGG-A-TTCT
1 TTTTAGAA-TTTATGGTATTTCT
8537209 TTTTAGAATTTATGGTATTTCT
1 TTTTAGAATTTATGGTATTTCT
8537231 TT
1 TT
8537233 AATAAAAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.32
21 9 0.41
22 6 0.27
ACGTcount: A:0.22, C:0.04, G:0.13, T:0.60
Consensus pattern (22 bp):
TTTTAGAATTTATGGTATTTCT
Found at i:8537233 original size:20 final size:21
Alignment explanation
Indices: 8537189--8537233 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
8537179 ATTTATAAAT
*
8537189 TTTAGAATTTTATGGATTCTT
1 TTTAGAATTTTATGGATTCTC
8537210 TTTAGAA-TTTATGGTATT-TC
1 TTTAGAATTTTATGG-ATTCTC
8537230 TTTA
1 TTTA
8537234 ATAAAAACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.24, C:0.04, G:0.13, T:0.58
Consensus pattern (21 bp):
TTTAGAATTTTATGGATTCTC
Found at i:8547134 original size:21 final size:21
Alignment explanation
Indices: 8547110--8547180 Score: 63
Period size: 21 Copynumber: 3.2 Consensus size: 21
8547100 GGCCAGAAGT
8547110 TATTGGTAATGTTTACTGGTC
1 TATTGGTAATGTTTACTGGTC
** * *
8547131 TATTGACAATGGTTGCATAGAAGT-
1 TATTGGTAATGTTTAC-T-G--GTC
8547155 TATTGGTAATGTTTACTGGTC
1 TATTGGTAATGTTTACTGGTC
8547176 TATTG
1 TATTG
8547181 ACAATGGTTG
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
20 2 0.05
21 17 0.46
22 2 0.05
23 2 0.05
24 12 0.32
25 2 0.05
ACGTcount: A:0.24, C:0.08, G:0.24, T:0.44
Consensus pattern (21 bp):
TATTGGTAATGTTTACTGGTC
Found at i:8547168 original size:45 final size:45
Alignment explanation
Indices: 8547104--8547193 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
8547094 GGGTTTGGCC
8547104 AGAAGTTATTGGTAATGTTTACTGGTCTATTGACAATGGTTGCAT
1 AGAAGTTATTGGTAATGTTTACTGGTCTATTGACAATGGTTGCAT
8547149 AGAAGTTATTGGTAATGTTTACTGGTCTATTGACAATGGTTGCAT
1 AGAAGTTATTGGTAATGTTTACTGGTCTATTGACAATGGTTGCAT
8547194 CATGAACTTC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.27, C:0.09, G:0.24, T:0.40
Consensus pattern (45 bp):
AGAAGTTATTGGTAATGTTTACTGGTCTATTGACAATGGTTGCAT
Found at i:8549175 original size:37 final size:37
Alignment explanation
Indices: 8549127--8549254 Score: 220
Period size: 37 Copynumber: 3.5 Consensus size: 37
8549117 GTTAAGTGAT
* *
8549127 AATTAAGATAGAGTTATTAAATGAGAATATTTTATTA
1 AATTAAAATAGAGTTATTAAATGAGAATACTTTATTA
8549164 AATTAAAATAGAGTTATTAAATGAGAATACTTTATTA
1 AATTAAAATAGAGTTATTAAATGAGAATACTTTATTA
* *
8549201 AATTAAAATGGAGTTATTAAATGAGAATAGTTTATTA
1 AATTAAAATAGAGTTATTAAATGAGAATACTTTATTA
8549238 AATTAAAATAGAGTTAT
1 AATTAAAATAGAGTTAT
8549255 CACTTAACTA
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 86 1.00
ACGTcount: A:0.48, C:0.01, G:0.13, T:0.38
Consensus pattern (37 bp):
AATTAAAATAGAGTTATTAAATGAGAATACTTTATTA
Found at i:8549247 original size:18 final size:18
Alignment explanation
Indices: 8549140--8549248 Score: 103
Period size: 18 Copynumber: 5.9 Consensus size: 18
8549130 TAAGATAGAG
* *
8549140 TTATTAAATGAGAATATT
1 TTATTAAATGAAAATAGT
* *
8549158 TTATTAAATTAAAATAGAG
1 TTATTAAATGAAAATAG-T
* *
8549177 TTATTAAATGAGAATACT
1 TTATTAAATGAAAATAGT
*
8549195 TTATTAAATTAAAATGGAG-
1 TTATTAAATGAAAAT--AGT
*
8549214 TTATTAAATGAGAATAGT
1 TTATTAAATGAAAATAGT
*
8549232 TTATTAAATTAAAATAG
1 TTATTAAATGAAAATAG
8549249 AGTTATCACT
Statistics
Matches: 72, Mismatches: 15, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
17 2 0.03
18 42 0.58
19 27 0.38
20 1 0.01
ACGTcount: A:0.48, C:0.01, G:0.12, T:0.39
Consensus pattern (18 bp):
TTATTAAATGAAAATAGT
Found at i:8563518 original size:21 final size:21
Alignment explanation
Indices: 8563494--8563553 Score: 86
Period size: 21 Copynumber: 2.9 Consensus size: 21
8563484 TTTAGATTAC
8563494 CTTATGAGTTTCCGTTCAGCT
1 CTTATGAGTTTCCGTTCAGCT
*
8563515 CTTATGGGTTTCCGTTCAGCT
1 CTTATGAGTTTCCGTTCAGCT
*
8563536 CCTATGAGCTTT-CGTTCA
1 CTTATGAG-TTTCCGTTCA
8563554 ACATTTAGGG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
21 32 0.91
22 3 0.09
ACGTcount: A:0.13, C:0.25, G:0.20, T:0.42
Consensus pattern (21 bp):
CTTATGAGTTTCCGTTCAGCT
Found at i:8578195 original size:18 final size:18
Alignment explanation
Indices: 8578172--8578206 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
8578162 CCATAGCCAC
8578172 CTTCAC-CAATCACATTCT
1 CTTCACACAATC-CATTCT
8578190 CTTCACACAATCCATTC
1 CTTCACACAATCCATTC
8578207 GTAGCTAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.29, C:0.40, G:0.00, T:0.31
Consensus pattern (18 bp):
CTTCACACAATCCATTCT
Found at i:8580798 original size:34 final size:35
Alignment explanation
Indices: 8580754--8580820 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
8580744 CAGTAAAATG
**
8580754 TTTTCCGTAAAATGATTT-CTGGAAAATATTTTAC
1 TTTTCCGTAAAATGATTTACTAAAAAATATTTTAC
*
8580788 TTTTCTGTAAAATGATTTACTAAAAAATATTTT
1 TTTTCCGTAAAATGATTTACTAAAAAATATTTT
8580821 CTGCTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.36, C:0.09, G:0.09, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTAAAAAATATTTTAC
Found at i:8589054 original size:11 final size:11
Alignment explanation
Indices: 8589031--8589061 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
8589021 GTATTTTATA
8589031 AAAATAATA-C
1 AAAATAATATC
8589041 AAAATAATATC
1 AAAATAATATC
8589052 AAAATAATAT
1 AAAATAATAT
8589062 ATAAAAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (11 bp):
AAAATAATATC
Found at i:8589586 original size:151 final size:151
Alignment explanation
Indices: 8589177--8589987 Score: 1003
Period size: 151 Copynumber: 5.3 Consensus size: 151
8589167 CAATTGTTCG
*
8589177 TATTTCGGCTC-TTTATTCGTATTTTTTTCTCGAATTTTATTACTTTTAAAAAATATACTATTTT
1 TATTTCGGC-CATTTGTTC-TATTTTTTTC-CGAATTTTATTACTTTTAAAAAATATACTATTTT
* *
8589241 GTAATTTTATTATTTTACATTATTTTAGTACATTGTGTTTGAAATGTATTAATTTAGTGTGTTTT
63 CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTTT
* *
8589306 TTAAATAAA-TTAAAAAAAAATCT
128 TTAAATAAATTTATAAAAAACTCT
* * ** * * *
8589329 TATTTCAGCTCTTTTCGTTCGTACTTTTTGAGCTAGGATTTTATTTCTTTTAAAAAATATACTAT
1 TATTTCGGC-CATTT-GTTC-TA-TTTTT-TTC-CGAATTTTATTACTTTTAAAAAATATACTAT
*
8589394 TTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTTATTTAGTGTGT
60 TTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGT
* ** *
8589459 CTTTTATTTAAATTTTTAAAAAACTCT
125 TTTTTAAATAAATTTATAAAAAACTCT
*
8589486 TATTTCGGCCATTTGTTC-A-TTTTTTCCGAATTTTATTACTTTTAATAAAAATATATTATTTT-
1 TATTTCGGCCATTTGTTCTATTTTTTTCCGAATTTTATTACTTTT-A-AAAAATATACTATTTTC
* *
8589548 TGTATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTG-TTT
64 T-AATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTTT
* *
8589612 TTAAATAAATTTTTAAAAAACCCT
128 TTAAATAAATTTATAAAAAACTCT
* * *
8589636 TATTTCGGCCATTTGTTCGTATTTTTTTCCCAGATTTTATTACTTTCAATAAGAATATATTATTT
1 TATTTCGGCCATTTGTTC-TATTTTTTTCCGA-ATTTTATTACTTTTAA-AA-AATATACTATTT
* *
8589701 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGCTTGAAATGTATTAATTTACTGTGTTT
62 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTT
* *
8589766 TTTAAATAAATTTGTAAAAAACCCT
127 TTTAAATAAATTTATAAAAAACTCT
* *
8589791 TATTTCGGCCCTTTGTTCATATTTTTTTTCC-AGATTTT-TTAC-TTTAAAAAATATAATATTTT
1 TATTTCGGCCATTTGTTC-TA-TTTTTTTCCGA-ATTTTATTACTTTTAAAAAATATACTATTTT
* * *
8589853 CTAAATTT-TTATTTTTACATTATTTTAGTACATTATATTTGAAATGTATTCATTTAGTGTGTTT
63 CTAATTTTATTA-TTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTT
* *
8589917 TTTAAATAAATTTAAAAAAAAACTAT
127 TTTAAATAAATTT-ATAAAAAACTCT
* * *
8589943 TATTTCGGCCATTTGTTCGCATTTTTTACCGGATTTTATTACTTT
1 TATTTCGGCCATTTGTTC-TATTTTTTTCCGAATTTTATTACTTT
8589988 CAATAAAAAA
Statistics
Matches: 583, Mismatches: 54, Indels: 43
0.86 0.08 0.06
Matches are distributed among these distances:
149 14 0.02
150 47 0.08
151 168 0.29
152 44 0.08
153 22 0.04
154 93 0.16
155 62 0.11
156 114 0.20
157 19 0.03
ACGTcount: A:0.30, C:0.09, G:0.08, T:0.53
Consensus pattern (151 bp):
TATTTCGGCCATTTGTTCTATTTTTTTCCGAATTTTATTACTTTTAAAAAATATACTATTTTCTA
ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTTTTTA
AATAAATTTATAAAAAACTCT
Found at i:8589778 original size:305 final size:305
Alignment explanation
Indices: 8589197--8589995 Score: 1082
Period size: 305 Copynumber: 2.6 Consensus size: 305
8589187 CTTTATTCGT
*
8589197 ATTTTTTTCTCGAATTTTATTACTTTTAAAAAATATACTA-TTTTGTAATTTTATTATTTTACAT
1 ATTTTTTTC-CGAATTTTATTACTTTTAAAAAATATAATATTTTTGT-ATTTTATTATTTTACAT
*
8589261 TATTTTAGTACATTGTGTTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAA-TTAAAAAAAA
64 TATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTAAAAAAAA
* * * * * * * *
8589325 ATCTTATTTCAGCTCTTTTCGTTCGTACTTTTTGAGCTAGGATTTTATTTCTTTTAA-AAAATAT
129 CTCTTATTTCGGC-CATTT-GTTCGTATTTTTTTA-CCA-GATTTTATTACTTTCAATAAAATAT
* * *
8589389 ACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTTATTTAG
190 ACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGCTTGAAATGTATTAATTTAC
** * *
8589454 TGTGTCTTTTATTTAAATTTTTAAAAAACTCTTATTTCGGCCATTTGTTC-
255 TGTGTCTTTTAAATAAATTTGTAAAAAACCCTTATTTCGGCCATTTGTTCA
*
8589504 A-TTTTTTCCGAATTTTATTACTTTTAATAAAAATATATTATTTTTGTATTTTATTATTTTACAT
1 ATTTTTTTCCGAATTTTATTACTTTT-A-AAAAATATAATATTTTTGTATTTTATTATTTTACAT
* **
8589568 TATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTG-TTTTTAAATAAATTTTTAAAAAA
64 TATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTAAAAAAAA
* * *
8589632 CCCTTATTTCGGCCATTTGTTCGTATTTTTTTCCCAGATTTTATTACTTTCAATAAGAATATATT
129 CTCTTATTTCGGCCATTTGTTCGTATTTTTTTACCAGATTTTATTACTTTCAATAA-AATATACT
8589697 ATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGCTTGAAATGTATTAATTTACTGT
193 ATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGCTTGAAATGTATTAATTTACTGT
* *
8589762 GTTTTTTAAATAAATTTGTAAAAAACCCTTATTTCGGCCCTTTGTTCA
258 GTCTTTTAAATAAATTTGTAAAAAACCCTTATTTCGGCCATTTGTTCA
* *
8589810 TATTTTTTTTCC-AGATTTT-TTAC-TTTAAAAAATATAATATTTTCT-AAATTT-TTATTTTTA
1 -A-TTTTTTTCCGA-ATTTTATTACTTTTAAAAAATATAATATTTT-TGTATTTTATTA-TTTTA
* *
8589870 CATTATTTTAGTACATTATATTTGAAATGTATTCATTTAGTGTGTTTTTTAAATAAATTTAAAAA
61 CATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTT-AAAA
* * *
8589935 AAAACTATTATTTCGGCCATTTGTTCGCA-TTTTTTACCGGATTTTATTACTTTCAATAAAA
125 AAAACTCTTATTTCGGCCATTTGTTCGTATTTTTTTACCAGATTTTATTACTTTCAATAAAA
8589996 AACACACTAA
Statistics
Matches: 439, Mismatches: 38, Indels: 32
0.86 0.07 0.06
Matches are distributed among these distances:
303 15 0.03
304 7 0.02
305 206 0.47
306 69 0.16
307 118 0.27
308 11 0.03
309 13 0.03
ACGTcount: A:0.31, C:0.09, G:0.08, T:0.52
Consensus pattern (305 bp):
ATTTTTTTCCGAATTTTATTACTTTTAAAAAATATAATATTTTTGTATTTTATTATTTTACATTA
TTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTAAAAAAAACT
CTTATTTCGGCCATTTGTTCGTATTTTTTTACCAGATTTTATTACTTTCAATAAAATATACTATT
TTCTAATTTTATTATTTTACATTATTTTAGTACATTATGCTTGAAATGTATTAATTTACTGTGTC
TTTTAAATAAATTTGTAAAAAACCCTTATTTCGGCCATTTGTTCA
Found at i:8590312 original size:35 final size:36
Alignment explanation
Indices: 8590252--8590322 Score: 117
Period size: 35 Copynumber: 2.0 Consensus size: 36
8590242 GGCGTTTGGA
*
8590252 TAAAAAACGCCGTTAAAATCGAGCATTAGCGGCGCTT
1 TAAAAAACGCCG-TAAAATCAAGCATTAGCGGCGCTT
8590289 TAAAAAACGCCG-AAAATCAAGCATTAGCGGCGCT
1 TAAAAAACGCCGTAAAATCAAGCATTAGCGGCGCT
8590323 ACTAAAAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
35 21 0.64
37 12 0.36
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.18
Consensus pattern (36 bp):
TAAAAAACGCCGTAAAATCAAGCATTAGCGGCGCTT
Found at i:8590330 original size:35 final size:36
Alignment explanation
Indices: 8590252--8590330 Score: 115
Period size: 35 Copynumber: 2.2 Consensus size: 36
8590242 GGCGTTTGGA
* *
8590252 TAAAAAACGCCGTTAAAATCGAGCATTAGCGGCGCTT
1 TAAAAAACGCCG-TAAAATCAAGCATTAGCGGCGCTC
8590289 TAAAAAACGCCG-AAAATCAAGCATTAGCGGCGCTAC
1 TAAAAAACGCCGTAAAATCAAGCATTAGCGGCGCT-C
8590325 TAAAAA
1 TAAAAA
8590331 TAAGAATTAG
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
35 21 0.54
36 6 0.15
37 12 0.31
ACGTcount: A:0.42, C:0.22, G:0.19, T:0.18
Consensus pattern (36 bp):
TAAAAAACGCCGTAAAATCAAGCATTAGCGGCGCTC
Found at i:8590448 original size:40 final size:40
Alignment explanation
Indices: 8590390--8590509 Score: 197
Period size: 40 Copynumber: 3.0 Consensus size: 40
8590380 ACCTTTTTTG
*
8590390 GGGCTTTAGCGGCATTTTTGGAGAAGCG-CGCTAATGCTCC
1 GGGCTTTAGCGGCATTTTTGGA-AAGCGCCGCTAATGCTCA
* *
8590430 GGGCTTTAGCGGCGTTTTTGGAAAACGCCGCTAATGCTCA
1 GGGCTTTAGCGGCATTTTTGGAAAGCGCCGCTAATGCTCA
8590470 GGGCTTTAGCGGCATTTTTGGAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCATTTTTGGAAAGCGCCGCTAATGCTCA
8590510 ATTTAGCGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
39 4 0.05
40 70 0.95
ACGTcount: A:0.19, C:0.23, G:0.31, T:0.28
Consensus pattern (40 bp):
GGGCTTTAGCGGCATTTTTGGAAAGCGCCGCTAATGCTCA
Found at i:8590532 original size:37 final size:38
Alignment explanation
Indices: 8590394--8590537 Score: 132
Period size: 40 Copynumber: 3.7 Consensus size: 38
8590384 TTTTTGGGGC
* * * *
8590394 TTTAGCGGCATTTTTGGAGAAGCG-CGCTAATGCTCCGGGC
1 TTTAGCGGCGTTTTT-GAAAAGCGCCGCTAATGCT-C-AGA
*
8590434 TTTAGCGGCGTTTTTGGAAAA-CGCCGCTAATGCTCAGGGC
1 TTTAGCGGCGTTTTT-GAAAAGCGCCGCTAATGCTCA--GA
* *
8590474 TTTAGCGGCATTTTTGGAAAGCGCCGCTAATGCTCA-A
1 TTTAGCGGCGTTTTTGAAAAGCGCCGCTAATGCTCAGA
* *
8590511 TTTAGCGGCGTTTTTAAAAAGCTCCGC
1 TTTAGCGGCGTTTTTGAAAAGCGCCGC
8590538 AAAAGCATTT
Statistics
Matches: 90, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
37 23 0.26
39 7 0.08
40 60 0.67
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (38 bp):
TTTAGCGGCGTTTTTGAAAAGCGCCGCTAATGCTCAGA
Found at i:8590959 original size:14 final size:15
Alignment explanation
Indices: 8590932--8590960 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8590922 AAGTTTATAT
8590932 ATTATGGAATTAGGG
1 ATTATGGAATTAGGG
8590947 ATTATGG-ATTAGGG
1 ATTATGGAATTAGGG
8590961 TTCTGGTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.34, T:0.34
Consensus pattern (15 bp):
ATTATGGAATTAGGG
Found at i:8591120 original size:78 final size:79
Alignment explanation
Indices: 8591036--8591180 Score: 231
Period size: 78 Copynumber: 1.8 Consensus size: 79
8591026 TGATCGTGTT
8591036 AGTTAGGATTTAGGGTTTAGATTAATTAGTGTGCTTTAA-TT-TATATTAAATAAGGTTTAGGGT
1 AGTTAGGATTTAGGGTTTAGATTAATTAGT-TGCTTTAATTTATATATTAAATAAGGTTTAGGGT
8591099 TAGGGGTAGGATTCG
65 TAGGGGTAGGATTCG
* * **
8591114 AGTTAGGGTTTATGGTTTAGATTAATTAGTTTTTTTAATTTATATATTAAATAAGGTTTAGGGTT
1 AGTTAGGATTTAGGGTTTAGATTAATTAGTTGCTTTAATTTATATATTAAATAAGGTTTAGGGTT
8591179 AG
66 AG
8591181 TAGTTAGGGT
Statistics
Matches: 61, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
77 6 0.10
78 30 0.49
79 25 0.41
ACGTcount: A:0.29, C:0.01, G:0.25, T:0.45
Consensus pattern (79 bp):
AGTTAGGATTTAGGGTTTAGATTAATTAGTTGCTTTAATTTATATATTAAATAAGGTTTAGGGTT
AGGGGTAGGATTCG
Done.