Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 231 of 240
Found at i:69626634 original size:19 final size:19
Alignment explanation
Indices: 69626587--69626665 Score: 77
Period size: 21 Copynumber: 3.8 Consensus size: 19
69626577 AAATTAAATC
*
69626587 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
69626607 TCTTCTAAGATTACATATCATA
1 ---TCTAAGATTACATATCATA
*
69626629 TCTAAGATTGCATATATCATA
1 TCTAAGATT--ACATATCATA
*
69626650 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
69626666 CTCAAAAATT
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
19 14 0.28
21 18 0.36
22 7 0.14
23 11 0.22
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:69626647 original size:21 final size:21
Alignment explanation
Indices: 69626621--69626664 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
69626611 CTAAGATTAC
69626621 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
69626642 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
69626663 AT
1 AT
69626665 CCTCAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.39
Consensus pattern (21 bp):
ATATCATATCTAAGATTGCAT
Found at i:69631498 original size:14 final size:15
Alignment explanation
Indices: 69631477--69631514 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
69631467 ATTTTACATT
69631477 ATTGTTAATTAAGTA
1 ATTGTTAATTAAGTA
69631492 A-TGTTAA-TAAGTA
1 ATTGTTAATTAAGTA
69631505 ATTGTTAATT
1 ATTGTTAATT
69631515 TTACTATGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 7 0.33
14 12 0.57
15 2 0.10
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.47
Consensus pattern (15 bp):
ATTGTTAATTAAGTA
Found at i:69640151 original size:21 final size:22
Alignment explanation
Indices: 69640125--69640177 Score: 74
Period size: 21 Copynumber: 2.4 Consensus size: 22
69640115 ACATATATGT
69640125 ATAATAAT-GATGAAAAT-AATA
1 ATAATAATAG-TGAAAATAAATA
69640146 ATAATAATAGTGAAAATAAATA
1 ATAATAATAGTGAAAATAAATA
69640168 ATATATAATA
1 ATA-ATAATA
69640178 AATATAGTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
21 15 0.52
22 8 0.28
23 6 0.21
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.30
Consensus pattern (22 bp):
ATAATAATAGTGAAAATAAATA
Found at i:69654690 original size:25 final size:25
Alignment explanation
Indices: 69654662--69654710 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
69654652 GAAAATCATA
* *
69654662 AAAT-ATTTTAAAATTATAGAAATTC
1 AAATAATTATAAAAATATA-AAATTC
69654687 AAATAATTATAAAAATATAAAATT
1 AAATAATTATAAAAATATAAAATT
69654711 TATTAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (25 bp):
AAATAATTATAAAAATATAAAATTC
Found at i:69654885 original size:26 final size:26
Alignment explanation
Indices: 69654856--69654912 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
69654846 TACCTACTTA
*
69654856 AATTTTGATAATCTTTT-AT-TTTTTTT
1 AATTTT-ATAAT-TTTTAATATTTTTAT
*
69654882 AATTTTATACTTTTTAATATTTTTAT
1 AATTTTATAATTTTTAATATTTTTAT
69654908 AATTT
1 AATTT
69654913 AATTTTTCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 4 0.15
25 6 0.22
26 17 0.63
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.67
Consensus pattern (26 bp):
AATTTTATAATTTTTAATATTTTTAT
Found at i:69654913 original size:16 final size:16
Alignment explanation
Indices: 69654894--69654936 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
69654884 TTTTATACTT
69654894 TTTAATATTTTTATAA
1 TTTAATATTTTTATAA
*
69654910 TTTAAT-TTTTCTATTA
1 TTTAATATTTT-TATAA
69654926 -TTAATATTTTT
1 TTTAATATTTTT
69654937 TTTATTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTAATATTTTTATAA
Found at i:69654941 original size:15 final size:15
Alignment explanation
Indices: 69654895--69654942 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
69654885 TTTATACTTT
*
69654895 TTAATATTTTTATAA
1 TTAATATTTTTATTA
69654910 TTTAAT-TTTTCTATTA
1 -TTAATATTTT-TATTA
*
69654926 TTAATATTTTTTTTA
1 TTAATATTTTTATTA
69654941 TT
1 TT
69654943 TTTTTAGAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
15 15 0.54
16 13 0.46
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (15 bp):
TTAATATTTTTATTA
Found at i:69659761 original size:17 final size:18
Alignment explanation
Indices: 69659736--69659775 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
69659726 GTTATATAAA
69659736 TTTTA-CAATTATCT-TT
1 TTTTATCAATTATCTATT
*
69659752 TTTTATCAATTATTTATT
1 TTTTATCAATTATCTATT
69659770 TTTTAT
1 TTTTAT
69659776 GTATATAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 5 0.24
17 8 0.38
18 8 0.38
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTATCAATTATCTATT
Found at i:69659807 original size:21 final size:19
Alignment explanation
Indices: 69659750--69659807 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 19
69659740 ACAATTATCT
69659750 TTTTTTAT-CA-ATTATTTA
1 TTTTTTATGCATA-TATTTA
*
69659768 TTTTTTATGTATATAATTTA
1 TTTTTTATGCATAT-ATTTA
69659788 TTATTTTATGCATAATATTT
1 TT-TTTTATGCAT-ATATTT
69659808 TTCACTTGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
18 8 0.24
19 2 0.06
20 8 0.24
21 13 0.39
22 2 0.06
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.64
Consensus pattern (19 bp):
TTTTTTATGCATATATTTA
Found at i:69661425 original size:12 final size:12
Alignment explanation
Indices: 69661410--69661437 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
69661400 ATAATAAAAT
69661410 ATATAAATATTA
1 ATATAAATATTA
69661422 ATATAAATATTA
1 ATATAAATATTA
69661434 ATAT
1 ATAT
69661438 TATTTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
ATATAAATATTA
Found at i:69661436 original size:18 final size:19
Alignment explanation
Indices: 69661401--69661439 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
69661391 TTAAATTTAA
69661401 TAATAAAATATATAAATAT
1 TAATAAAATATATAAATAT
69661420 TAATATAAATAT-T-AATAT
1 TAATA-AAATATATAAATAT
69661438 TA
1 TA
69661440 TTTTAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.37
19 6 0.32
20 6 0.32
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
TAATAAAATATATAAATAT
Found at i:69661456 original size:15 final size:15
Alignment explanation
Indices: 69661433--69661462 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
69661423 TATAAATATT
*
69661433 AATATTATTTTAAAA
1 AATAATATTTTAAAA
69661448 AATAATATTTTAAAA
1 AATAATATTTTAAAA
69661463 TTACAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
AATAATATTTTAAAA
Found at i:69664214 original size:50 final size:50
Alignment explanation
Indices: 69664111--69664358 Score: 275
Period size: 50 Copynumber: 4.8 Consensus size: 50
69664101 GATAATAACA
* * ** * *
69664111 TGCCAAAGCCATGT-CCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
69664161 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
69664211 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
69664261 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
69664316 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
69664359 TTACCCAAAT
Statistics
Matches: 169, Mismatches: 21, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 104 0.62
51 20 0.12
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:69664284 original size:100 final size:104
Alignment explanation
Indices: 69664110--69664358 Score: 348
Period size: 100 Copynumber: 2.4 Consensus size: 104
69664100 TGATAATAAC
**
69664110 ATGCCAAAGCCATGT-CCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
69664174 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
69664211 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
69664274 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
69664316 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
69664359 TTACCCAAAT
Statistics
Matches: 132, Mismatches: 8, Indels: 11
0.87 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 63 0.48
101 22 0.17
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:69664474 original size:13 final size:13
Alignment explanation
Indices: 69664453--69664484 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
69664443 GCTTGGATCA
*
69664453 TCATCAAATAAAT
1 TCATAAAATAAAT
69664466 TCATAAAATAAAT
1 TCATAAAATAAAT
69664479 TCATAA
1 TCATAA
69664485 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:69664731 original size:29 final size:29
Alignment explanation
Indices: 69664694--69664752 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
69664684 GCCCTCGACT
*
69664694 CTAACTTTTT-CAAAATTACAATTTTGCCC
1 CTAAATTTTTACAAAATTAC-ATTTTGCCC
* *
69664723 CTAAATTTTTACATAATTACATTTTTCCC
1 CTAAATTTTTACAAAATTACATTTTGCCC
69664752 C
1 C
69664753 AAGGCTCGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 18 0.69
30 8 0.31
ACGTcount: A:0.31, C:0.24, G:0.02, T:0.44
Consensus pattern (29 bp):
CTAAATTTTTACAAAATTACATTTTGCCC
Found at i:69669730 original size:73 final size:72
Alignment explanation
Indices: 69669607--69669857 Score: 400
Period size: 73 Copynumber: 3.5 Consensus size: 72
69669597 AACATGTGAA
* *
69669607 CTGAGGCTCAACTCACTTT-TCGCAATATGAGTTGATTTTTTGACAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCT
*
69669671 CAGCGTGTC
64 CAACGTGTC
*
69669680 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTC
1 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTC
69669745 AACGTGTC
65 AACGTGTC
*
69669753 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
*
69669818 ATGTGT-
66 ACGTGTC
69669824 CTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA
1 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
69669858 TTCTTTCAAA
Statistics
Matches: 168, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
70 19 0.11
71 14 0.08
72 35 0.21
73 100 0.60
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.31
Consensus pattern (72 bp):
CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
ACGTGTC
Found at i:69669946 original size:87 final size:85
Alignment explanation
Indices: 69669792--69670028 Score: 268
Period size: 86 Copynumber: 2.8 Consensus size: 85
69669782 AGTTGAATTT
* ** * *
69669792 TGAAAACAGAAATTGAAATTACCTCAATGTGTCTGAGGCTCAACTCA-TTCTCGCAATATGAGTT
1 TGAAAACAGAAATTGAAAATACCTCGGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAG-T
69669856 GA-TTCTTTCAAAAACATAATAA
65 GATTTCTTTCAAAAACA-AA-AA
*
69669878 TGAAAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TGAAAACAGAAATTGAAAATACCTCGGTGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
69669943 GATTTTTTTGAAAAACAGAAA
65 GATTTCTTTCAAAAACAAAAA
* *
69669964 T-CAAA-AGCTAATTGAAAATACCTCGGCGTGTGTCCTGAGGCTCAA-TCACCTCTCGCAATATG
1 TGAAAACAG-AAATTGAAAATACCTC-G-GTGTG-CCTGAGGCTCAACTCACCTCTCGCAATATG
69670026 AGT
62 AGT
69670029 TGAAATTAAA
Statistics
Matches: 132, Mismatches: 13, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
84 2 0.02
85 17 0.13
86 51 0.39
87 36 0.27
88 26 0.20
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (85 bp):
TGAAAACAGAAATTGAAAATACCTCGGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTG
ATTTCTTTCAAAAACAAAAA
Found at i:69670334 original size:74 final size:71
Alignment explanation
Indices: 69670140--69670378 Score: 329
Period size: 74 Copynumber: 3.3 Consensus size: 71
69670130 TCAACCCACC
* * * *
69670140 TCTCGCAATATGAGTTGATTTTTTTTGAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCT
1 TCTCGCAATATGAGTTGA-TTTTTTTAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCT
69670205 CAACTCA
65 CAACTCA
* * * *
69670212 TCTCGCAATATAAGTTGA-ATTTTGAAAA-TGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
1 TCTCGCAATATGAGTTGATTTTTTTAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
69670275 AACTCA
66 AACTCA
69670281 TTTCTCGCAATATGAGTTGATTTTTTTAACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGG
1 --TCTCGCAATATGAGTTGATTTTTTTAA-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGG
69670346 CTCAACTCA
63 CTCAACTCA
*
69670355 CCTCTAGCAATATGAGTTGATTTT
1 --TCTCGCAATATGAGTTGATTTT
69670379 GAAAAACAAA
Statistics
Matches: 147, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
69 37 0.25
70 7 0.05
71 17 0.12
72 23 0.16
73 2 0.01
74 61 0.41
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (71 bp):
TCTCGCAATATGAGTTGATTTTTTTAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
AACTCA
Found at i:69670541 original size:68 final size:70
Alignment explanation
Indices: 69670396--69670568 Score: 219
Period size: 68 Copynumber: 2.5 Consensus size: 70
69670386 AAAAATTAAA
* * * * **
69670396 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCGGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACATAAACTAAAAATACCTCAACGTG
69670460 CCCCG
66 CCCCG
*
69670465 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAA-A-AAATTAAAAATACCTCAACGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACATAAACTAAAAATACCTCAACGTG
* **
69670528 TCTTG
66 CCCCG
69670533 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
69670569 CCTTGGAAAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
67 1 0.01
68 55 0.60
69 27 0.29
70 9 0.10
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACATAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:69683055 original size:21 final size:20
Alignment explanation
Indices: 69683029--69683101 Score: 69
Period size: 21 Copynumber: 3.5 Consensus size: 20
69683019 ACATATATGT
69683029 ATAATAATGATGAAAATAATA
1 ATAATAAT-ATGAAAATAATA
69683050 ATAATAATAGTGAAAATAAATA
1 ATAATAATA-TGAAAAT-AATA
69683072 AT-ATAATAAT-AAATATAATA
1 ATAATAAT-ATGAAA-ATAATA
* *
69683092 GTAACAATAT
1 ATAATAATAT
69683102 TAGTAATATG
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
20 11 0.24
21 27 0.60
22 7 0.16
ACGTcount: A:0.62, C:0.01, G:0.07, T:0.30
Consensus pattern (20 bp):
ATAATAATATGAAAATAATA
Found at i:69683073 original size:16 final size:15
Alignment explanation
Indices: 69683044--69683086 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
69683034 AATGATGAAA
69683044 ATAATAAT-AATAAT
1 ATAATAATAAATAAT
69683058 AGTGAA-AATAAATAAT
1 A-T-AATAATAAATAAT
69683074 ATAATAATAAATA
1 ATAATAATAAATA
69683087 TAATAGTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
14 3 0.12
15 13 0.52
16 9 0.36
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (15 bp):
ATAATAATAAATAAT
Found at i:69683643 original size:17 final size:17
Alignment explanation
Indices: 69683621--69683672 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
69683611 CCGGTCCGAT
69683621 CGCCGGACCGTTGCCGG
1 CGCCGGACCGTTGCCGG
* *
69683638 CGCCGGTCCGAT-----
1 CGCCGGACCGTTGCCGG
69683650 CGCCGGACCGTTGCCGG
1 CGCCGGACCGTTGCCGG
69683667 CGCCGG
1 CGCCGG
69683673 TCCGATCGCC
Statistics
Matches: 26, Mismatches: 4, Indels: 10
0.65 0.10 0.25
Matches are distributed among these distances:
12 10 0.38
17 16 0.62
ACGTcount: A:0.06, C:0.42, G:0.40, T:0.12
Consensus pattern (17 bp):
CGCCGGACCGTTGCCGG
Found at i:69683644 original size:29 final size:29
Alignment explanation
Indices: 69683611--69683701 Score: 173
Period size: 29 Copynumber: 3.1 Consensus size: 29
69683601 GGGGAGGGCT
69683611 CCGGTCCGATCGCCGGACCGTTGCCGGCG
1 CCGGTCCGATCGCCGGACCGTTGCCGGCG
69683640 CCGGTCCGATCGCCGGACCGTTGCCGGCG
1 CCGGTCCGATCGCCGGACCGTTGCCGGCG
*
69683669 CCGGTCCGATCGCCAGACCGTTGCCGGCG
1 CCGGTCCGATCGCCGGACCGTTGCCGGCG
69683698 CCGG
1 CCGG
69683702 CCACCGCGTG
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.08, C:0.42, G:0.37, T:0.13
Consensus pattern (29 bp):
CCGGTCCGATCGCCGGACCGTTGCCGGCG
Found at i:69684738 original size:108 final size:107
Alignment explanation
Indices: 69684501--69684775 Score: 378
Period size: 108 Copynumber: 2.6 Consensus size: 107
69684491 TTTCAAAAAT
69684501 AGATGGT-GAGTGGG-TCGTCCCTTCAATAATATCCCAATGTTCAAACCAGGACCAACTTGACTT
1 AGATGGTGGAGTGGGCTC-TCCCTTCAATAATATCCCAATGTTCAAACCAGGACCAACTTGACTT
* *
69684564 CTATGAGATGTGGCAGAACTTGATTTCCACCTTTTCCAAGGGC
65 CTATGAGATGAGGCAGAACTTGATTTACACCTTTTCCAAGGGC
* * ** *
69684607 AGATGGTGGAGTGGACCCTCCCTTCGGTAACATCCCAATGTTCAAACCAGGACCAACTTGACTTA
1 AGATGGTGGAGTGGGCTCTCCCTTCAATAATATCCCAATGTTCAAACCAGGACCAACTTGACTT-
* * *
69684672 CT-TGAGATGGAGGCGGAACTTGATTTATACCTTTTCCAGGGGC
65 CTATGAGAT-GAGGCAGAACTTGATTTACACCTTTTCCAAGGGC
* *
69684715 AGATGGTGGAGTGGGCTCTCCCTTCAATAATATCCCAAAGTTTAAACC-GTGACCAACTTGA
1 AGATGGTGGAGTGGGCTCTCCCTTCAATAATATCCCAATGTTCAAACCAG-GACCAACTTGA
69684776 GGCGATGGTG
Statistics
Matches: 147, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
106 7 0.05
107 56 0.38
108 84 0.57
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (107 bp):
AGATGGTGGAGTGGGCTCTCCCTTCAATAATATCCCAATGTTCAAACCAGGACCAACTTGACTTC
TATGAGATGAGGCAGAACTTGATTTACACCTTTTCCAAGGGC
Found at i:69684845 original size:99 final size:99
Alignment explanation
Indices: 69684694--69684983 Score: 381
Period size: 99 Copynumber: 2.9 Consensus size: 99
69684684 GCGGAACTTG
* * *
69684694 ATTTATACCTTTTCCAGGGGCAGATGGTGGAGTGGGCTCTCCCTTCAATAATATCCCAAAGTTTA
1 ATTTATACGTTTTCCAGGGGCAGATGGTGGAGTGGGCTCTCCCTTTAGTAATATCCCAAAGTTTA
* *
69684759 AACCGTGACCAACTTGAGGCGATGGTGCTGGTGT
66 AACCGTGACCAACTTGAGGCGGTGGTGCTGGCGT
* ** *
69684793 ATTTATACGTTTTCTAGAAGCAGATGGTGGAGTGGGCTCTCCCTTTGGTAATATCCCAAAGTTTA
1 ATTTATACGTTTTCCAGGGGCAGATGGTGGAGTGGGCTCTCCCTTTAGTAATATCCCAAAGTTTA
* *
69684858 AACCGTGA-CAACCTTAAGGCGGTGGTGGTGGCGT
66 AACCGTGACCAA-CTTGAGGCGGTGGTGCTGGCGT
* * *
69684892 ATTTATACGTTTTCCAGGGGAAAATGGTGGAGTGGG-TCCTCCCTTTCGTAATATCCCAAAGTTC
1 ATTTATACGTTTTCCAGGGGCAGATGGTGGAGTGGGCT-CTCCCTTTAGTAATATCCCAAAGTT-
*
69684956 TAATA--GTGACCAACTTGAAGCGGTGGTG
64 TAA-ACCGTGACCAACTTGAGGCGGTGGTG
69684984 GTGACCAACT
Statistics
Matches: 167, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
98 4 0.02
99 156 0.93
100 6 0.04
101 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (99 bp):
ATTTATACGTTTTCCAGGGGCAGATGGTGGAGTGGGCTCTCCCTTTAGTAATATCCCAAAGTTTA
AACCGTGACCAACTTGAGGCGGTGGTGCTGGCGT
Found at i:69689160 original size:31 final size:32
Alignment explanation
Indices: 69689125--69689191 Score: 91
Period size: 31 Copynumber: 2.1 Consensus size: 32
69689115 TTACTCCCTA
* * *
69689125 TTAAAATTCAATAATTCAATTT-AATCCTTTT
1 TTAAAAGTAAATAATTCAATTTAAATCATTTT
*
69689156 TTAAAAGTAAATAATTTAATTTAAATCATTTT
1 TTAAAAGTAAATAATTCAATTTAAATCATTTT
69689188 TTAA
1 TTAA
69689192 TATTAATTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
31 19 0.61
32 12 0.39
ACGTcount: A:0.43, C:0.07, G:0.01, T:0.48
Consensus pattern (32 bp):
TTAAAAGTAAATAATTCAATTTAAATCATTTT
Found at i:69690803 original size:21 final size:21
Alignment explanation
Indices: 69690762--69690804 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 21
69690752 CATTCTAATC
*
69690762 TTTTAATATTTTTCATGATTT
1 TTTTAATATTTTTCATAATTT
* *
69690783 TTTTAAT-TTTTTTATAAATT
1 TTTTAATATTTTTCATAATTT
69690803 TT
1 TT
69690805 AAATTATTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (21 bp):
TTTTAATATTTTTCATAATTT
Found at i:69701721 original size:42 final size:43
Alignment explanation
Indices: 69701674--69701760 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 43
69701664 TAATTGTAAT
* * *
69701674 TTAAATTCTAATT-TTTTTAATTTATAATTATCACGACTTCTA
1 TTAAATTCTAATTATTTTAAATGTATAATTATCACAACTTCTA
* *
69701716 TTAAATTGTAATTATTTTAAATGTATAATTATCACAAGTTCTA
1 TTAAATTCTAATTATTTTAAATGTATAATTATCACAACTTCTA
69701759 TT
1 TT
69701761 TTATTTCAAC
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
42 12 0.31
43 27 0.69
ACGTcount: A:0.36, C:0.09, G:0.05, T:0.51
Consensus pattern (43 bp):
TTAAATTCTAATTATTTTAAATGTATAATTATCACAACTTCTA
Found at i:69703361 original size:16 final size:16
Alignment explanation
Indices: 69703340--69703370 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69703330 AACTTGAATG
69703340 ACCCAAAATCAAAACA
1 ACCCAAAATCAAAACA
*
69703356 ACCCAAACTCAAAAC
1 ACCCAAAATCAAAAC
69703371 CACTTAACTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.35, G:0.00, T:0.06
Consensus pattern (16 bp):
ACCCAAAATCAAAACA
Found at i:69707781 original size:22 final size:21
Alignment explanation
Indices: 69707754--69707794 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
69707744 AAACATGAAT
69707754 TATATA-ATAGACATAAAAAA
1 TATATATATAGACATAAAAAA
* *
69707774 TATATATATATATATAAAAAA
1 TATATATATAGACATAAAAAA
69707795 GGAGATGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.32
Consensus pattern (21 bp):
TATATATATAGACATAAAAAA
Found at i:69708955 original size:100 final size:103
Alignment explanation
Indices: 69708793--69708984 Score: 300
Period size: 100 Copynumber: 1.9 Consensus size: 103
69708783 GTACGTCAAC
*
69708793 ATGAGATACACATGATATACTACATGCATGTTACTATTTGGTTGTTTTATTAGTCATGCTAG-TT
1 ATGAGATACACATGACATAC-ACA-GCATGTTACTATTTGGTTGTTTTATTAGTCATGCTAGTTT
*
69708857 TTAATAGTAAAAATAGATGAAATTTTTCATTTACGCAAGT
64 TTAATAATAAAAATAGATGAAATTTTTCATTTACGCAAGT
*
69708897 ATGAGATACACATGACATAC-CA-CGTGTTACTATTTGGTTGTTTTATTAGTCATGCTAGTTTTT
1 ATGAGATACACATGACATACACAGCATGTTACTATTTGGTTGTTTTATTAGTCATGCTAGTTTTT
* *
69708960 AATAATAGAAATAGATGAATTTTTT
66 AATAATAAAAATAGATGAAATTTTT
69708985 AACGAAAAGG
Statistics
Matches: 82, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
100 35 0.43
101 26 0.32
102 2 0.02
104 19 0.23
ACGTcount: A:0.33, C:0.10, G:0.16, T:0.41
Consensus pattern (103 bp):
ATGAGATACACATGACATACACAGCATGTTACTATTTGGTTGTTTTATTAGTCATGCTAGTTTTT
AATAATAAAAATAGATGAAATTTTTCATTTACGCAAGT
Found at i:69709326 original size:19 final size:19
Alignment explanation
Indices: 69709302--69709355 Score: 108
Period size: 19 Copynumber: 2.8 Consensus size: 19
69709292 AATCTTCAAG
69709302 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
69709321 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
69709340 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
69709356 AGATATGATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:69709381 original size:22 final size:22
Alignment explanation
Indices: 69709302--69709378 Score: 85
Period size: 19 Copynumber: 3.7 Consensus size: 22
69709292 AATCTTCAAG
69709302 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
69709321 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
69709340 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
69709362 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
69709379 GATTTAATTT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
19 32 0.62
22 8 0.15
23 12 0.23
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:69709834 original size:3 final size:3
Alignment explanation
Indices: 69709826--69709867 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
69709816 AGTAATCTTG
* *
69709826 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TTT TAT TTT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
69709868 ATTCATGCAC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TAT
Found at i:69718070 original size:42 final size:42
Alignment explanation
Indices: 69717984--69718099 Score: 142
Period size: 42 Copynumber: 2.8 Consensus size: 42
69717974 GCACATAAGT
* * * * *
69717984 GCTAAACGGAAACCCGTAAGGGTTGAACGGAAGCTAATAGGA
1 GCTAAACGGAAACCCATAAGGGTTAAACTGAAGCTAAGAAGA
* *
69718026 GCTGAACGGAAACCCATAAGGGTTAAACTGAAGCTTAGAAGA
1 GCTAAACGGAAACCCATAAGGGTTAAACTGAAGCTAAGAAGA
* * *
69718068 GCTAAACTGAAACTCAGAAGGGTTAAACTGAA
1 GCTAAACGGAAACCCATAAGGGTTAAACTGAA
69718100 ACTCATATGA
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.41, C:0.16, G:0.27, T:0.16
Consensus pattern (42 bp):
GCTAAACGGAAACCCATAAGGGTTAAACTGAAGCTAAGAAGA
Found at i:69718075 original size:21 final size:21
Alignment explanation
Indices: 69718049--69718141 Score: 82
Period size: 21 Copynumber: 4.5 Consensus size: 21
69718039 CCATAAGGGT
* *
69718049 TAAACTGAAGCTTAGAAGAGC
1 TAAACTGAAACTCAGAAGAGC
* *
69718070 TAAACTGAAACTCAGAAGGGT
1 TAAACTGAAACTCAGAAGAGC
* * *
69718091 TAAACTGAAACTCATATGAGT
1 TAAACTGAAACTCAGAAGAGC
*
69718112 TAAA-TGAAGCTCATG-AGAGC
1 TAAACTGAAACTCA-GAAGAGC
*
69718132 TAAACAGAAA
1 TAAACTGAAA
69718142 GCAAACACGA
Statistics
Matches: 57, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
20 15 0.26
21 42 0.74
ACGTcount: A:0.45, C:0.14, G:0.20, T:0.20
Consensus pattern (21 bp):
TAAACTGAAACTCAGAAGAGC
Found at i:69720331 original size:17 final size:17
Alignment explanation
Indices: 69720309--69720372 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 17
69720299 AATCTTAGAG
69720309 TTCTAATTGTATACAGC
1 TTCTAATTGTATACAGC
* *
69720326 TTCTAATTATGTCTTAGAG-
1 TTCTAA-T-TGT-ATACAGC
69720345 TTCTAATTGTATACAGC
1 TTCTAATTGTATACAGC
*
69720362 TTTTAATTGTA
1 TTCTAATTGTA
69720373 GCCTTTGATT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
16 4 0.11
17 19 0.50
18 2 0.05
19 9 0.24
20 4 0.11
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.47
Consensus pattern (17 bp):
TTCTAATTGTATACAGC
Found at i:69720342 original size:36 final size:36
Alignment explanation
Indices: 69720301--69720369 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
69720291 GATTATTTAA
69720301 TCTTAGAGTTCTAATTGTATACAGCTTCTAATTATG
1 TCTTAGAGTTCTAATTGTATACAGCTTCTAATTATG
*
69720337 TCTTAGAGTTCTAATTGTATACAGCTTTTAATT
1 TCTTAGAGTTCTAATTGTATACAGCTTCTAATT
69720370 GTAGCCTTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (36 bp):
TCTTAGAGTTCTAATTGTATACAGCTTCTAATTATG
Found at i:69720350 original size:19 final size:18
Alignment explanation
Indices: 69720301--69720352 Score: 54
Period size: 19 Copynumber: 2.9 Consensus size: 18
69720291 GATTATTTAA
69720301 TCTTAGAGTTCTAA-TTG
1 TCTTAGAGTTCTAATTTG
* *
69720318 T-ATACAGCTTCTAATTATG
1 TCTTAGAG-TTCTAATT-TG
69720337 TCTTAGAGTTCTAATT
1 TCTTAGAGTTCTAATT
69720353 GTATACAGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
16 4 0.15
17 7 0.26
18 1 0.04
19 11 0.41
20 4 0.15
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.46
Consensus pattern (18 bp):
TCTTAGAGTTCTAATTTG
Found at i:69725447 original size:17 final size:17
Alignment explanation
Indices: 69725425--69725488 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 17
69725415 AATCTTAGAG
69725425 TTCTAATTGTATACAGC
1 TTCTAATTGTATACAGC
* *
69725442 TTCTAATTATGTCTTAGAG-
1 TTCTAA-T-TGT-ATACAGC
69725461 TTCTAATTGTATACAGC
1 TTCTAATTGTATACAGC
*
69725478 TTTTAATTGTA
1 TTCTAATTGTA
69725489 GCCTTTGATT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
16 4 0.11
17 19 0.50
18 2 0.05
19 9 0.24
20 4 0.11
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.47
Consensus pattern (17 bp):
TTCTAATTGTATACAGC
Found at i:69725458 original size:36 final size:36
Alignment explanation
Indices: 69725417--69725485 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
69725407 GATTATTTAA
69725417 TCTTAGAGTTCTAATTGTATACAGCTTCTAATTATG
1 TCTTAGAGTTCTAATTGTATACAGCTTCTAATTATG
*
69725453 TCTTAGAGTTCTAATTGTATACAGCTTTTAATT
1 TCTTAGAGTTCTAATTGTATACAGCTTCTAATT
69725486 GTAGCCTTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (36 bp):
TCTTAGAGTTCTAATTGTATACAGCTTCTAATTATG
Found at i:69725466 original size:19 final size:18
Alignment explanation
Indices: 69725417--69725468 Score: 54
Period size: 19 Copynumber: 2.9 Consensus size: 18
69725407 GATTATTTAA
69725417 TCTTAGAGTTCTAA-TTG
1 TCTTAGAGTTCTAATTTG
* *
69725434 T-ATACAGCTTCTAATTATG
1 TCTTAGAG-TTCTAATT-TG
69725453 TCTTAGAGTTCTAATT
1 TCTTAGAGTTCTAATT
69725469 GTATACAGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
16 4 0.15
17 7 0.26
18 1 0.04
19 11 0.41
20 4 0.15
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.46
Consensus pattern (18 bp):
TCTTAGAGTTCTAATTTG
Found at i:69732278 original size:19 final size:19
Alignment explanation
Indices: 69732254--69732296 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
69732244 TGCCAACATA
69732254 AGCTACAGCTTGGGTCATT
1 AGCTACAGCTTGGGTCATT
69732273 AGCTACAGCTTGGGTCATT
1 AGCTACAGCTTGGGTCATT
69732292 AGCTA
1 AGCTA
69732297 AATTACGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (19 bp):
AGCTACAGCTTGGGTCATT
Found at i:69737244 original size:22 final size:22
Alignment explanation
Indices: 69737219--69737261 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
69737209 TATCCAAACA
69737219 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* * *
69737241 ATAATAGTAAAATGGTAGCAA
1 ATAACAATAAAATAGTAGCAA
69737262 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:69740113 original size:15 final size:15
Alignment explanation
Indices: 69740070--69740115 Score: 58
Period size: 15 Copynumber: 3.0 Consensus size: 15
69740060 TTGTATGAAC
69740070 TTTTTATATTTTTTAA
1 TTTTTATA-TTTTTAA
*
69740086 -TTTTAAATATTTTAA
1 TTTTTATAT-TTTTAA
69740101 TTTTTATATTTTTAA
1 TTTTTATATTTTTAA
69740116 AATTATTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 1 0.04
15 18 0.69
16 7 0.27
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTTATATTTTTAA
Found at i:69740768 original size:17 final size:18
Alignment explanation
Indices: 69740746--69740779 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
69740736 TTCGCCCCTC
69740746 ATTATACATA-CTAAATA
1 ATTATACATACCTAAATA
*
69740763 ATTATATATACCTAAAT
1 ATTATACATACCTAAAT
69740780 TATGTTTATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (18 bp):
ATTATACATACCTAAATA
Found at i:69748175 original size:23 final size:24
Alignment explanation
Indices: 69748149--69748195 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
69748139 TTACAAATTT
* *
69748149 AACA-CTTGAATGACTAAAATGAA
1 AACATCTTAAATGACCAAAATGAA
*
69748172 AACATTTTAAATGACCAAAATGAA
1 AACATCTTAAATGACCAAAATGAA
69748196 CACTCTAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.53, C:0.13, G:0.11, T:0.23
Consensus pattern (24 bp):
AACATCTTAAATGACCAAAATGAA
Found at i:69756602 original size:11 final size:12
Alignment explanation
Indices: 69756586--69756627 Score: 68
Period size: 12 Copynumber: 3.6 Consensus size: 12
69756576 TCCCACTCCA
69756586 AAAAAAAATT-G
1 AAAAAAAATTAG
*
69756597 AAAAAAAATTGG
1 AAAAAAAATTAG
69756609 AAAAAAAATTAG
1 AAAAAAAATTAG
69756621 AAAAAAA
1 AAAAAAA
69756628 TGGAAGCTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
11 10 0.34
12 19 0.66
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.14
Consensus pattern (12 bp):
AAAAAAAATTAG
Found at i:69756602 original size:12 final size:12
Alignment explanation
Indices: 69756585--69756627 Score: 61
Period size: 11 Copynumber: 3.6 Consensus size: 12
69756575 TTCCCACTCC
69756585 AAAAAAAAATTG
1 AAAAAAAAATTG
69756597 -AAAAAAAATTG
1 AAAAAAAAATTG
*
69756608 GAAAAAAAATTAG
1 AAAAAAAAATT-G
69756621 AAAAAAA
1 AAAAAAA
69756628 TGGAAGCTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
11 11 0.39
12 10 0.36
13 7 0.25
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.14
Consensus pattern (12 bp):
AAAAAAAAATTG
Found at i:69756628 original size:23 final size:22
Alignment explanation
Indices: 69756586--69756632 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
69756576 TCCCACTCCA
69756586 AAAAAAAATTGAAAAAAAATTGG
1 AAAAAAAATTGAAAAAAAA-TGG
69756609 AAAAAAAATT-AGAAAAAAATGG
1 AAAAAAAATTGA-AAAAAAATGG
69756631 AA
1 AA
69756633 GCTTATTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 6 0.26
23 17 0.74
ACGTcount: A:0.72, C:0.00, G:0.13, T:0.15
Consensus pattern (22 bp):
AAAAAAAATTGAAAAAAAATGG
Found at i:69757425 original size:17 final size:18
Alignment explanation
Indices: 69757387--69757427 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
69757377 TTTAATTATT
69757387 TATAAATATTAAATAAAA
1 TATAAATATTAAATAAAA
69757405 -ATAAAT-TTAAA-AATAA
1 TATAAATATTAAATAA-AA
69757421 TATAAAT
1 TATAAAT
69757428 GAATTTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 2 0.10
16 7 0.33
17 12 0.57
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
TATAAATATTAAATAAAA
Found at i:69758499 original size:21 final size:21
Alignment explanation
Indices: 69758475--69758517 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
69758465 CATAGACCAT
69758475 TGCCATCTTGTTACACAATTC
1 TGCCATCTTGTTACACAATTC
69758496 TGCCATCTTGTTACACAATTC
1 TGCCATCTTGTTACACAATTC
69758517 T
1 T
69758518 ATTTCCTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.28, G:0.09, T:0.40
Consensus pattern (21 bp):
TGCCATCTTGTTACACAATTC
Found at i:69763783 original size:15 final size:16
Alignment explanation
Indices: 69763763--69763795 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
69763753 ATTATTATAT
69763763 TTTATTAATA-ATTAA
1 TTTATTAATATATTAA
*
69763778 TTTATTTATATATTAA
1 TTTATTAATATATTAA
69763794 TT
1 TT
69763796 GTAGTTGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTATTAATATATTAA
Found at i:69769116 original size:84 final size:84
Alignment explanation
Indices: 69769019--69769211 Score: 212
Period size: 87 Copynumber: 2.3 Consensus size: 84
69769009 GCACTCAATT
* ** *
69769019 TTTTTAAAAAAAAGTAATTAAGTC-TCTATTTTTTTCA-C-ATTGAATACTTGAACTTTCAAAGT
1 TTTTT-AAAAAAAGCAATTAAGTCAT-TATTTTTTTCACCAATTGAATACTTGAACTGCCAAAAT
** *
69769081 GTATCAAAAAGGCCCTCAAAC
64 ACATCAAAAAGGCCCTCAAAA
** * *
69769102 TTTTTCAAGAAAAAGCAATTAACCCATTGTTTTTTTCACTCAATTGAGTACTTGAACTGCCAAAA
1 TTTTT-AA-AAAAAGCAATTAAGTCATTATTTTTTTCAC-CAATTGAATACTTGAACTGCCAAAA
69769167 TACATCAAAAAGGCCCTCAAAA
63 TACATCAAAAAGGCCCTCAAAA
*
69769189 TTTTTTAAAAAAGCAATTAAGTC
1 TTTTTAAAAAAAGCAATTAAGTC
69769212 CCTGCTTATT
Statistics
Matches: 90, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
83 7 0.08
84 23 0.26
85 15 0.17
86 2 0.02
87 43 0.48
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (84 bp):
TTTTTAAAAAAAGCAATTAAGTCATTATTTTTTTCACCAATTGAATACTTGAACTGCCAAAATAC
ATCAAAAAGGCCCTCAAAA
Found at i:69769480 original size:19 final size:20
Alignment explanation
Indices: 69769456--69769527 Score: 78
Period size: 19 Copynumber: 3.6 Consensus size: 20
69769446 AAAATTTAGA
69769456 AAAATATTATAAAAATA-AT
1 AAAATATTATAAAAATATAT
69769475 AAAATATTAT-AAAATATAT
1 AAAATATTATAAAAATATAT
* *
69769494 AGAGATA-TAGAAAAAATATAT
1 A-AAATATTA-TAAAAATATAT
*
69769515 AAAATTTTATAAA
1 AAAATATTATAAA
69769528 GTCGTAAGAA
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
18 6 0.14
19 15 0.35
20 10 0.23
21 12 0.28
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (20 bp):
AAAATATTATAAAAATATAT
Found at i:69769486 original size:10 final size:10
Alignment explanation
Indices: 69769456--69769527 Score: 60
Period size: 10 Copynumber: 7.3 Consensus size: 10
69769446 AAAATTTAGA
69769456 AAAATATTAT
1 AAAATATTAT
*
69769466 AAAA-ATAAT
1 AAAATATTAT
69769475 AAAATATTAT
1 AAAATATTAT
69769485 AAAATA-TAT
1 AAAATATTAT
* *
69769494 AGAGATA-TAG
1 A-AAATATTAT
*
69769504 AAAAAATATAT
1 AAAATAT-TAT
*
69769515 AAAATTTTAT
1 AAAATATTAT
69769525 AAA
1 AAA
69769528 GTCGTAAGAA
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
9 15 0.31
10 27 0.55
11 7 0.14
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (10 bp):
AAAATATTAT
Found at i:69769890 original size:19 final size:19
Alignment explanation
Indices: 69769848--69769890 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
69769838 TTGAGTAACT
*
69769848 TTTTAATATATTTATTAAA
1 TTTTAATAAATTTATTAAA
*
69769867 GTTTAATAAATTT-TATAAA
1 TTTTAATAAATTTAT-TAAA
69769886 TTTTA
1 TTTTA
69769891 TTGATTTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 1 0.05
19 19 0.95
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (19 bp):
TTTTAATAAATTTATTAAA
Found at i:69786520 original size:7 final size:7
Alignment explanation
Indices: 69786511--69786545 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
69786501 AGTGTGCTTG
*
69786511 TTTTTTG
1 TTTTTTA
69786518 TTTTTTA
1 TTTTTTA
*
69786525 TTTTATA
1 TTTTTTA
69786532 TTTTTTA
1 TTTTTTA
69786539 TTTTTTA
1 TTTTTTA
69786546 CATTAATGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.14, C:0.00, G:0.03, T:0.83
Consensus pattern (7 bp):
TTTTTTA
Found at i:69786723 original size:7 final size:7
Alignment explanation
Indices: 69786711--69786736 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
69786701 TTTGTGTCAA
69786711 TGACAAT
1 TGACAAT
69786718 TGACAAT
1 TGACAAT
69786725 TGACAAT
1 TGACAAT
69786732 TGACA
1 TGACA
69786737 TTTCCTCTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (7 bp):
TGACAAT
Found at i:69791107 original size:22 final size:22
Alignment explanation
Indices: 69791082--69791131 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
69791072 TCGAACAATC
*
69791082 GAAGCTCAAAGCTTGAACGTTG
1 GAAGCCCAAAGCTTGAACGTTG
69791104 GAAGCCCAAAGCTTGAACGTTG
1 GAAGCCCAAAGCTTGAACGTTG
69791126 GAAGCC
1 GAAGCC
69791132 TTCATCTTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.32, C:0.22, G:0.28, T:0.18
Consensus pattern (22 bp):
GAAGCCCAAAGCTTGAACGTTG
Found at i:69793372 original size:68 final size:69
Alignment explanation
Indices: 69793173--69793419 Score: 248
Period size: 69 Copynumber: 3.6 Consensus size: 69
69793163 AGCTGTAATA
* * * * * * *
69793173 AGGAATAATGTGTAAGACCATAGCTTGACTATGGAAATATAGAGAGAGTTTGCCAGGACATTCAA
1 AGGAATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAAAGAGTCTGTCAGGACATTAAA
69793238 CATG
66 CATG
* * * *
69793242 AGGAATAATGTGTAAGACCATAGCTCGGCTATGGCAACATA-AAGAGAGTCTATTAGGTCATT-A
1 AGGAATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAA-AGAGTCTGTCAGGACATTAA
69793305 ACATG
65 ACATG
* * * * * *
69793310 GGGAATAATGTCTAAGTCCATAACTCAACTATGGCAACATAGAAAGAGTCTGTCAAGACATTAAA
1 AGGAATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAAAGAGTCTGTCAGGACATTAAA
69793375 CATG
66 CATG
* * * * * *
69793379 A-GACATGATGTGTAAAACCATAACTTGGCTATGGCAGCATA
1 AGGA-ATAATGTGTAAGACCATAGCTCGACTATGGCAACATA
69793420 TGGAGTTTAC
Statistics
Matches: 145, Mismatches: 29, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
68 58 0.40
69 87 0.60
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.24
Consensus pattern (69 bp):
AGGAATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAAAGAGTCTGTCAGGACATTAAA
CATG
Found at i:69793610 original size:20 final size:20
Alignment explanation
Indices: 69793569--69793616 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
69793559 TTATTTTTAT
*
69793569 ATTTTTAAAAAATTTTAGTA
1 ATTTTTAAAAAATTCTAGTA
*
69793589 ATTTTTAACAATATTCTA-TA
1 ATTTTTAA-AAAATTCTAGTA
*
69793609 ATATTTAA
1 ATTTTTAA
69793617 TACTCTTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.50
Consensus pattern (20 bp):
ATTTTTAAAAAATTCTAGTA
Found at i:69793642 original size:19 final size:19
Alignment explanation
Indices: 69793620--69793658 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
69793610 TATTTAATAC
*
69793620 TCTTTTAGGTTTTTATATA
1 TCTTTTAGATTTTTATATA
69793639 TCTTTTAGATTTTTATATA
1 TCTTTTAGATTTTTATATA
69793658 T
1 T
69793659 TGAATAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.23, C:0.05, G:0.08, T:0.64
Consensus pattern (19 bp):
TCTTTTAGATTTTTATATA
Found at i:69794498 original size:20 final size:21
Alignment explanation
Indices: 69794469--69794517 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 21
69794459 TTTTTTTAGT
* *
69794469 TTTCTCTTCTCCTTTTTTTTC
1 TTTCTCTTCTCCGTTCTTTTC
*
69794490 TTTCT-TTCTTCGTTCTTTTC
1 TTTCTCTTCTCCGTTCTTTTC
*
69794510 TTTTTCTT
1 TTTCTCTT
69794518 TTTAATTTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.00, C:0.24, G:0.02, T:0.73
Consensus pattern (21 bp):
TTTCTCTTCTCCGTTCTTTTC
Found at i:69806139 original size:10 final size:10
Alignment explanation
Indices: 69806124--69806154 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
69806114 TAGGGTTCTA
69806124 ATTTGATTTT
1 ATTTGATTTT
69806134 ATTTGATTTT
1 ATTTGATTTT
*
69806144 ATTTAATTTT
1 ATTTGATTTT
69806154 A
1 A
69806155 ATTTTTCTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (10 bp):
ATTTGATTTT
Found at i:69811276 original size:2 final size:2
Alignment explanation
Indices: 69811271--69811295 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
69811261 TATATATACA
69811271 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
69811296 ATGCAACATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:69834853 original size:26 final size:26
Alignment explanation
Indices: 69834823--69834875 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
69834813 CTTGAATCTT
69834823 AGTGATGGTGAGCAATGCAATGAACA
1 AGTGATGGTGAGCAATGCAATGAACA
69834849 AGTGATGGTGAGCAATGCAATGAACA
1 AGTGATGGTGAGCAATGCAATGAACA
69834875 A
1 A
69834876 TCCATCTTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.40, C:0.11, G:0.30, T:0.19
Consensus pattern (26 bp):
AGTGATGGTGAGCAATGCAATGAACA
Found at i:69837003 original size:42 final size:42
Alignment explanation
Indices: 69836952--69837238 Score: 443
Period size: 42 Copynumber: 6.8 Consensus size: 42
69836942 GTTTACAAAC
* *
69836952 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
69836994 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
69837036 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
* *
69837078 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTGTAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG-AA
* * * *
69837120 AAAAATGCCACTAAAGACCATGTTCTTTAGCGGCGCTTAGGA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
* *
69837162 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTA-ATG
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGA-A
*
69837204 GAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG
69837239 TTTTTTTTCT
Statistics
Matches: 226, Mismatches: 16, Indels: 6
0.91 0.06 0.02
Matches are distributed among these distances:
41 3 0.01
42 220 0.97
43 3 0.01
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
Found at i:69837294 original size:84 final size:82
Alignment explanation
Indices: 69836952--69837325 Score: 417
Period size: 84 Copynumber: 4.5 Consensus size: 82
69836942 GTTTACAAAC
* * *
69836952 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGT
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
* **
69837017 TCTTTAGCGGCGCTTAGAA
66 TCTTTAGCGGC-ATT-TTA
69837036 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
*
69837101 TCTTTAGCGGCGTTTGTAA
66 TCTTTAGCGGCATTT-T-A
* * * *
69837120 AAAAATGCCACTAAAGACCATGTTCTTTAGCGGCGCTTAGGAAAAAACGCCGCTAAAGAACATGT
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
**
69837185 TCTTTAGCGGC-GCTTA
66 TCTTTAGCGGCATTTTA
* ****** *
69837201 ATGGAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTTCTAATCGCCGCTAAAGAAC
1 A---AAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG-CTTAGAAAAAAACGCCGCTAAAGAAC
* *
69837266 ATGTTCTTTAGTGGCATTTTTT
62 ATGTTCTTTAGCGGCA-TTTTA
* * * *
69837288 ACAAACGCCGCAAAAGAACATGTTCTTTAGTGGCGCTT
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
69837326 TTATACAAAA
Statistics
Matches: 250, Mismatches: 32, Indels: 17
0.84 0.11 0.06
Matches are distributed among these distances:
81 2 0.01
82 1 0.00
83 5 0.02
84 207 0.83
85 32 0.13
87 3 0.01
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (82 bp):
AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
TCTTTAGCGGCATTTTA
Found at i:69837294 original size:126 final size:126
Alignment explanation
Indices: 69836952--69837325 Score: 439
Period size: 126 Copynumber: 3.0 Consensus size: 126
69836942 GTTTACAAAC
* * * * * *
69836952 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAG-AAAAAAACGCCGCTAAAGATCATG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTGTAAAAAAATGCCACTAAAGAACATG
* * *
69837016 TTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
65 TTCTTTAGCGGCGATTAGGAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
69837078 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTAAAAAAATGCCACTAAAGACCATGT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTAAAAAAATGCCACTAAAGAACATGT
* *
69837143 TCTTTAGCGGCGCTTAGGAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTA-ATG
66 TCTTTAGCGGCGATTAGGAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGA-A
* * * ***** *
69837204 GAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTTCTAATCGCCGCTAAAGAACATG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTAAAAAAAT-GCCACTAAAGAACATG
* **** * * *
69837269 TTCTTTAGTGGC-ATTTTTTACAAACGCCGCAAAAGAACATGTTCTTTAGTGGCGCTT
65 TTCTTTAGCGGCGATTAGGAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTT
69837326 TTATACAAAA
Statistics
Matches: 217, Mismatches: 28, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
125 4 0.02
126 188 0.87
127 25 0.12
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (126 bp):
AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTAAAAAAATGCCACTAAAGAACATGT
TCTTTAGCGGCGATTAGGAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
Found at i:69837415 original size:14 final size:14
Alignment explanation
Indices: 69837392--69837425 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
69837382 GCCCTCCTGT
*
69837392 AGCAAAATTTCAAA
1 AGCAACATTTCAAA
69837406 AGCAACATTTCAAA
1 AGCAACATTTCAAA
69837420 AGCAAC
1 AGCAAC
69837426 CAATAGCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.53, C:0.21, G:0.09, T:0.18
Consensus pattern (14 bp):
AGCAACATTTCAAA
Found at i:69837717 original size:21 final size:21
Alignment explanation
Indices: 69837649--69837719 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
69837639 TTTTGCTCTG
69837649 CTCTGCTTCTCTT-GCTGCAGC
1 CTCTGCTTC-CTTCGCTGCAGC
* * *
69837670 CTCCGCTTCCCTCGCTGCAGT
1 CTCTGCTTCCTTCGCTGCAGC
* * *
69837691 CGCTGCTTCCTTCGCTTCCGC
1 CTCTGCTTCCTTCGCTGCAGC
69837712 CTCTGCTT
1 CTCTGCTT
69837720 TAAGTTGTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
20 2 0.05
21 37 0.95
ACGTcount: A:0.03, C:0.44, G:0.18, T:0.35
Consensus pattern (21 bp):
CTCTGCTTCCTTCGCTGCAGC
Found at i:69843219 original size:11 final size:9
Alignment explanation
Indices: 69843171--69843335 Score: 69
Period size: 7 Copynumber: 19.0 Consensus size: 9
69843161 AATTGCAATG
69843171 GTAAGTTAT
1 GTAAGTTAT
69843180 GTAAGTTAT
1 GTAAGTTAT
69843189 GTAAGTTAAAT
1 GTAAGTT--AT
69843200 GT-A-TTAT
1 GTAAGTTAT
69843207 GTAAGTTAAAT
1 GTAAGTT--AT
69843218 GTAAG-T-T
1 GTAAGTTAT
69843225 GTAAGTTAT
1 GTAAGTTAT
*
69843234 -TATGTATTAT
1 GTAAG--TTAT
69843244 GTAAG-T-T
1 GTAAGTTAT
69843251 GTAAGTTAAAT
1 GTAAGTT--AT
*
69843262 GT-A-TTGT
1 GTAAGTTAT
69843269 GTAAG-T-T
1 GTAAGTTAT
69843276 GTAAGTTAAAT
1 GTAAGTT--AT
69843287 GT-A-TTAT
1 GTAAGTTAT
69843294 GTAAG-T-T
1 GTAAGTTAT
69843301 GTAAGTTAT
1 GTAAGTTAT
*
69843310 -TATGTATTAT
1 GTAAG--TTAT
69843320 GTAAG-T-T
1 GTAAGTTAT
69843327 GTAAGTTAT
1 GTAAGTTAT
69843336 TATGTATTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 60
0.65 0.03 0.32
Matches are distributed among these distances:
7 41 0.34
8 18 0.15
9 27 0.22
10 12 0.10
11 23 0.19
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:69843246 original size:19 final size:19
Alignment explanation
Indices: 69843185--69843602 Score: 82
Period size: 18 Copynumber: 21.6 Consensus size: 19
69843175 GTTATGTAAG
*
69843185 TTATGTAAGTTA-AATGTA
1 TTATGTAAGTTATTATGTA
*
69843203 TTATGTAAGTTA-AATGTAA
1 TTATGTAAGTTATTATGT-A
*
69843222 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTATTATGTA
69843240 TTATGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAG-T-T-A-TT--ATGTA
*
69843265 TTGTGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAG-T-T-A-TT--ATGTA
* *
69843290 TTATGTAAGTT-GTAAG--
1 TTATGTAAGTTATTATGTA
*
69843306 TTAT-TATG-TATTATGTAA
1 TTATGTAAGTTATTATGT-A
*
69843324 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTATTATGTA
*
69843342 TTGTGTAAGTTGCAAGTTAAATGTA
1 TTATGTAAGTT---A-TT--ATGTA
* *
69843367 TTATGTAAGTT-GTAAG--
1 TTATGTAAGTTATTATGTA
*
69843383 TTAT-TATG-TATTATGTAA
1 TTATGTAAGTTATTATGT-A
*
69843401 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTATTATGTA
* * *
69843419 TTGTGTAAGTT-GTAAG--
1 TTATGTAAGTTATTATGTA
*
69843435 TTAT-TATG-TATTATGTAA
1 TTATGTAAGTTATTATGT-A
*
69843453 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTATTATGTA
*
69843471 TTGTGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAG-T-T-A-TT--ATGTA
* * *
69843496 TTATGTCAGTCA-AATGTA
1 TTATGTAAGTTATTATGTA
69843514 TTATGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAG-T-T-A-TT--ATGTA
* *
69843539 TTATGTAAGTT-GTAAGTTA
1 TTATGTAAGTTATTATG-TA
*
69843558 TTATGT-A-TTATGTAAGTA
1 TTATGTAAGTTAT-TATGTA
*
69843576 --ATGTAAGTTA-AATGTA
1 TTATGTAAGTTATTATGTA
69843592 TTATGTAAGTT
1 TTATGTAAGTT
69843603 GTAAGTTATT
Statistics
Matches: 301, Mismatches: 43, Indels: 112
0.66 0.09 0.25
Matches are distributed among these distances:
14 3 0.01
15 18 0.06
16 19 0.06
17 6 0.02
18 83 0.28
19 71 0.24
20 5 0.02
21 3 0.01
22 4 0.01
23 8 0.03
24 3 0.01
25 78 0.26
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.46
Consensus pattern (19 bp):
TTATGTAAGTTATTATGTA
Found at i:69843250 original size:26 final size:26
Alignment explanation
Indices: 69843216--69843621 Score: 579
Period size: 26 Copynumber: 16.1 Consensus size: 26
69843206 TGTAAGTTAA
69843216 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
69843242 ATGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
69843267 GTGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
69843292 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
69843318 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* * *
69843344 GTGTAAGTTGCAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
69843369 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
69843395 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
69843421 GTGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
69843447 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
69843473 GTGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
69843498 ATGTCA---GTCA---A--ATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
69843516 ATGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
69843541 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
69843567 ATGTAAGTAATGTAAGTTA-AATGTATT
1 ATGTAAGT--TGTAAGTTATTATGTATT
69843594 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
69843620 AT
1 AT
69843622 TTAATAAAAT
Statistics
Matches: 345, Mismatches: 22, Indels: 26
0.88 0.06 0.07
Matches are distributed among these distances:
18 12 0.03
19 1 0.00
21 3 0.01
22 3 0.01
24 1 0.00
25 113 0.33
26 188 0.54
27 15 0.04
28 9 0.03
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (26 bp):
ATGTAAGTTGTAAGTTATTATGTATT
Found at i:69843591 original size:53 final size:51
Alignment explanation
Indices: 69843216--69843621 Score: 571
Period size: 51 Copynumber: 8.0 Consensus size: 51
69843206 TGTAAGTTAA
* *
69843216 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATTATGTAAGTTGTAAGTTATTATGTATT
*
69843267 GTGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATT
* * * *
69843318 ATGTAAGTTGTAAGTTATTATGTATTGTGTAAGTTGCAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATTATGTAAGTTGTAAGTTATTATGTATT
*
69843369 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATTATGTAAGTTGTAAGTTATTATGTATT
* *
69843421 GTGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATTATGTAAGTTGTAAGTTATTATGTATT
* * *
69843473 GTGTAAGTTGTAAGTTAAATGTATTATGTCA---GTCA---A--ATGTATT
1 ATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATT
69843516 ATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATT
69843567 ATGTAAGTAATGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGT--TGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATT
69843620 AT
1 AT
69843622 TTAATAAAAT
Statistics
Matches: 324, Mismatches: 18, Indels: 24
0.89 0.05 0.07
Matches are distributed among these distances:
43 36 0.11
45 1 0.00
46 3 0.01
48 3 0.01
49 1 0.00
50 24 0.07
51 114 0.35
52 97 0.30
53 45 0.14
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (51 bp):
ATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATT
Found at i:69843614 original size:19 final size:19
Alignment explanation
Indices: 69843391--69843617 Score: 100
Period size: 19 Copynumber: 12.5 Consensus size: 19
69843381 AGTTATTATG
69843391 TATTATGTAAGTTGTAAGT
1 TATTATGTAAGTTGTAAGT
69843410 TATTATGT-A-TTGT--GT
1 TATTATGTAAGTTGTAAGT
* * * *
69843425 AAGT-TGTAAGTTATTA-T
1 TATTATGTAAGTTGTAAGT
69843442 GTATTATGTAAGTTGTAAGT
1 -TATTATGTAAGTTGTAAGT
69843462 TATTATGT-A-TTGT--GT
1 TATTATGTAAGTTGTAAGT
* * *
69843477 AAGT-TGTAAG-T-TAAAT
1 TATTATGTAAGTTGTAAGT
* * *
69843493 GTATTATGTCAG-T-CAAAT
1 -TATTATGTAAGTTGTAAGT
69843511 GTATTATGTAAGTTGTAAGTTAAAT
1 -TATTATGTAAGTTGTAAG-----T
69843536 GTATTATGTAAGTTGTAAGT
1 -TATTATGTAAGTTGTAAGT
*
69843556 TATTATGT-ATTATGTAAG-
1 TATTATGTAAGT-TGTAAGT
*
69843574 TA--ATGTAAG-T-TAAAT
1 TATTATGTAAGTTGTAAGT
69843589 GTATTATGTAAGTTGTAAGT
1 -TATTATGTAAGTTGTAAGT
69843609 TATTATGTA
1 TATTATGTA
69843618 TTATTTAATA
Statistics
Matches: 159, Mismatches: 21, Indels: 56
0.67 0.09 0.24
Matches are distributed among these distances:
14 10 0.06
15 12 0.08
16 10 0.06
17 12 0.08
18 36 0.23
19 51 0.32
20 8 0.05
25 20 0.13
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.47
Consensus pattern (19 bp):
TATTATGTAAGTTGTAAGT
Found at i:69843741 original size:73 final size:73
Alignment explanation
Indices: 69843658--69843814 Score: 305
Period size: 73 Copynumber: 2.1 Consensus size: 73
69843648 ACATTACTAA
69843658 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
69843723 TATTTTTT
66 TATTTTTT
69843731 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
69843796 TATTTTTT
66 TATTTTTT
69843804 TATATATTATT
1 TATA-ATTATT
69843815 TTATCTTTTA
Statistics
Matches: 83, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
73 77 0.93
74 6 0.07
ACGTcount: A:0.41, C:0.06, G:0.01, T:0.52
Consensus pattern (73 bp):
TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
TATTTTTT
Found at i:69843801 original size:35 final size:35
Alignment explanation
Indices: 69843689--69843801 Score: 104
Period size: 35 Copynumber: 3.1 Consensus size: 35
69843679 ATAAAATAAC
69843689 ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
1 ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
* * **** *
69843724 ATTTT-TTTATAATTATTAATAATATTTAATAAAATA-AC
1 ATTTTATTT-TAA-TAGT--CAAT-TTTAATATTCCACAT
69843762 ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
1 ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
69843797 ATTTT
1 ATTTT
69843802 TTTATATATT
Statistics
Matches: 57, Mismatches: 14, Indels: 14
0.67 0.16 0.16
Matches are distributed among these distances:
34 11 0.19
35 17 0.30
36 3 0.05
37 3 0.05
38 12 0.21
39 11 0.19
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.52
Consensus pattern (35 bp):
ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
Found at i:69843972 original size:13 final size:13
Alignment explanation
Indices: 69843954--69844024 Score: 106
Period size: 13 Copynumber: 5.5 Consensus size: 13
69843944 ATTTATAATT
69843954 ATTTAAGTAATAA
1 ATTTAAGTAATAA
* *
69843967 ATTTAAGTAACAT
1 ATTTAAGTAATAA
69843980 ATTTAAGTAATAA
1 ATTTAAGTAATAA
* *
69843993 ATTTAAGTAACAT
1 ATTTAAGTAATAA
69844006 ATTTAAGTAATAA
1 ATTTAAGTAATAA
69844019 ATTTAA
1 ATTTAA
69844025 ACAAATTTTA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 50 1.00
ACGTcount: A:0.51, C:0.03, G:0.07, T:0.39
Consensus pattern (13 bp):
ATTTAAGTAATAA
Found at i:69843983 original size:26 final size:26
Alignment explanation
Indices: 69843953--69844024 Score: 144
Period size: 26 Copynumber: 2.8 Consensus size: 26
69843943 TATTTATAAT
69843953 TATTTAAGTAATAAATTTAAGTAACA
1 TATTTAAGTAATAAATTTAAGTAACA
69843979 TATTTAAGTAATAAATTTAAGTAACA
1 TATTTAAGTAATAAATTTAAGTAACA
69844005 TATTTAAGTAATAAATTTAA
1 TATTTAAGTAATAAATTTAA
69844025 ACAAATTTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (26 bp):
TATTTAAGTAATAAATTTAAGTAACA
Found at i:69844051 original size:17 final size:17
Alignment explanation
Indices: 69844029--69844326 Score: 152
Period size: 17 Copynumber: 16.6 Consensus size: 17
69844019 ATTTAAACAA
69844029 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
69844046 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
69844063 A-TTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
69844079 AAACAAATTTTAGTAAGTAATGT
1 ------ATTTTAGTAAGTAATGT
* * *
69844102 ATTTAAGTAATTAAT-A
1 ATTTTAGTAAGTAATGT
* *
69844118 AATTTA--AA-CAA---
1 ATTTTAGTAAGTAATGT
69844129 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
69844146 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
69844163 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
69844180 AAACAAATTTTAGTAAGTAATGT
1 ------ATTTTAGTAAGTAATGT
* *
69844203 ATTTTAG-AAATAAATTT
1 ATTTTAGTAAGT-AATGT
*
69844220 AAACAAATTTATGTAAGTAATGT
1 -----ATTTTA-GTAAGTAATGT
69844243 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
69844260 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
*
69844277 AAACAAATTTTAGTAAGTAATTT
1 ------ATTTTAGTAAGTAATGT
69844300 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
69844317 ATTTTAGTAA
1 ATTTTAGTAA
69844327 TAAATTTAAC
Statistics
Matches: 222, Mismatches: 20, Indels: 78
0.69 0.06 0.24
Matches are distributed among these distances:
11 5 0.02
13 4 0.02
14 4 0.02
15 1 0.00
16 21 0.09
17 124 0.56
18 5 0.02
22 6 0.03
23 46 0.21
24 6 0.03
ACGTcount: A:0.43, C:0.02, G:0.12, T:0.44
Consensus pattern (17 bp):
ATTTTAGTAAGTAATGT
Found at i:69844182 original size:57 final size:57
Alignment explanation
Indices: 69844085--69844335 Score: 311
Period size: 57 Copynumber: 4.6 Consensus size: 57
69844075 ATTTAAACAA
*
69844085 ATTTTAGTAAGTAATGTATTTAAGTAATTAATAAATTTAAACAAATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGTATTT---T-AGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
69844146 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
* *
69844203 ATTTTAG-AAATAA---A-TTTA--AACAAATTT-----A----T-GTAAGTAATGT
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
*
69844243 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATTT
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
69844300 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAA
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAA
69844336 CATTCAATCG
Statistics
Matches: 167, Mismatches: 6, Indels: 38
0.79 0.03 0.18
Matches are distributed among these distances:
40 18 0.11
41 6 0.04
44 1 0.01
45 5 0.03
47 8 0.05
50 8 0.05
52 5 0.03
53 1 0.01
56 6 0.04
57 87 0.52
58 1 0.01
61 21 0.13
ACGTcount: A:0.43, C:0.02, G:0.11, T:0.44
Consensus pattern (57 bp):
ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
Found at i:69844193 original size:40 final size:40
Alignment explanation
Indices: 69844146--69844252 Score: 189
Period size: 40 Copynumber: 2.7 Consensus size: 40
69844136 TAAGTAATGT
69844146 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
*
69844186 ATTTTAGTAAGTAATGTATTTTAGAAATAAATTTAAACAA
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
69844226 A-TTTATGTAAGTAATGTATTTTAGTAA
1 ATTTTA-GTAAGTAATGTATTTTAGTAA
69844253 GTAATGTATT
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
39 4 0.06
40 60 0.94
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (40 bp):
ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
Found at i:69845683 original size:11 final size:11
Alignment explanation
Indices: 69845667--69845706 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
69845657 GATGATAATA
69845667 CATTAGTTACC
1 CATTAGTTACC
69845678 CATTAGTTACC
1 CATTAGTTACC
*
69845689 CACTAGTTACC
1 CATTAGTTACC
69845700 CA-TAGTT
1 CATTAGTT
69845707 TGAGATATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 5 0.18
11 23 0.82
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.35
Consensus pattern (11 bp):
CATTAGTTACC
Found at i:69847685 original size:7 final size:7
Alignment explanation
Indices: 69847632--69847707 Score: 64
Period size: 7 Copynumber: 10.9 Consensus size: 7
69847622 ACCTTAATCA
*
69847632 CTAAACT
1 CTAAACC
69847639 CTCAAACC
1 CT-AAACC
69847647 CTAAACC
1 CTAAACC
** *
69847654 AAAAACA
1 CTAAACC
69847661 CTAAA-C
1 CTAAACC
* *
69847667 CTACATC
1 CTAAACC
*
69847674 GTAAACC
1 CTAAACC
69847681 CTAAACC
1 CTAAACC
*
69847688 CTAAACT
1 CTAAACC
69847695 CTAAACC
1 CTAAACC
69847702 CTAAAC
1 CTAAAC
69847708 TAGAATTCAA
Statistics
Matches: 53, Mismatches: 14, Indels: 4
0.75 0.20 0.06
Matches are distributed among these distances:
6 4 0.08
7 43 0.81
8 6 0.11
ACGTcount: A:0.46, C:0.36, G:0.01, T:0.17
Consensus pattern (7 bp):
CTAAACC
Found at i:69847770 original size:17 final size:17
Alignment explanation
Indices: 69847748--69847797 Score: 84
Period size: 17 Copynumber: 3.0 Consensus size: 17
69847738 TATCCTATTT
69847748 CCTACATTATATAATAA
1 CCTACATTATATAATAA
69847765 CCTACATTATATAATAA
1 CCTACATTATATAATAA
*
69847782 ACTACA-TATATAATAA
1 CCTACATTATATAATAA
69847798 TCTAGCGGCG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
16 10 0.31
17 22 0.69
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34
Consensus pattern (17 bp):
CCTACATTATATAATAA
Found at i:69848000 original size:113 final size:111
Alignment explanation
Indices: 69847819--69848169 Score: 402
Period size: 113 Copynumber: 3.1 Consensus size: 111
69847809 TTCCCACAAC
* * * *
69847819 GCGCCGCTAATAATATGTTTTACCGGCGTTTTACCATAAGCGCCAC-AACTGGTAGTATACATCA
1 GCGCCGCTAATACTATGATTTAGCGGCGTTTTA-AATAAGCGCCACTAA-T-GTAGTATACATCA
69847883 AGACCAAAGCGCTGCGTTTTGGTTAATGTTTTGCGGCGCTTTACAATAA
63 AGACCAAAGCGCTGCGTTTTGGTTAATGTTTTGCGGCGCTTTACAATAA
* * *
69847932 GCGCCGCTAATACTATGATTTAGCGGCGTTTTCAAATAAGCGCCACTAATCGTAATGTACCTCAA
1 GCGCCGCTAATACTATGATTTAGCGGCGTTTT-AAATAAGCGCCACTAAT-GTAGTATACATCAA
* * * * *
69847997 GACCAAA-CTCTGCGTTTTGGTTAA-GAAATATTGCGGCGCTTTTCACTAC
64 GACCAAAGCGCTGCGTTTTGGTTAATG---TTTTGCGGCGCTTTACAATAA
* ** * *
69848046 TCGCCGCTAATACTATTCTTTAGCAGCGTTTTAATATAAGCGCCACTACTGCTAGTATACATCAA
1 GCGCCGCTAATACTATGATTTAGCGGCGTTTTAA-ATAAGCGCCACTAATG-TAGTATACATCAA
* * *
69848111 GACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGTTTTCCAATAA
64 GACCAAAGCGCTGCGTTTTGGTTAATGTTTTGCGGCGCTTTACAATAA
*
69848159 GCGCCACTAAT
1 GCGCCGCTAAT
69848170 CCTAATATAC
Statistics
Matches: 199, Mismatches: 30, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
111 1 0.01
112 16 0.08
113 87 0.44
114 79 0.40
115 16 0.08
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (111 bp):
GCGCCGCTAATACTATGATTTAGCGGCGTTTTAAATAAGCGCCACTAATGTAGTATACATCAAGA
CCAAAGCGCTGCGTTTTGGTTAATGTTTTGCGGCGCTTTACAATAA
Found at i:69848271 original size:188 final size:188
Alignment explanation
Indices: 69847949--69848351 Score: 689
Period size: 188 Copynumber: 2.1 Consensus size: 188
69847939 TAATACTATG
* * * * *
69847949 ATTTAGCGGCGTTTTCAAATAAGCGCCACTAATCGTAATGTACCTCAAGACCAAACTCTGCGTTT
1 ATTTTGCGGCGTTTTCCAATAAGCGCCACTAATCCTAATATACCGCAAGACCAAACTCTGCGTTT
69848014 TGGTTAAGAAATATTGCGGCGCTTTTCACTACTCGCCGCTAATACTATTCTTTAGCAGCGTTTTA
66 TGGTTAAGAAATATTGCGGCGCTTTTCACTACTCGCCGCTAATACTATTCTTTAGCAGCGTTTTA
69848079 ATATAAGCGCCACTACTGCTAGTATACATCAAGACCAAAGCGCTGCGTTTTGGTTAAT
131 ATATAAGCGCCACTACTGCTAGTATACATCAAGACCAAAGCGCTGCGTTTTGGTTAAT
69848137 ATTTTGCGGCGTTTTCCAATAAGCGCCACTAATCCTAATATACCGCAAGACCAAACTCTGCGTTT
1 ATTTTGCGGCGTTTTCCAATAAGCGCCACTAATCCTAATATACCGCAAGACCAAACTCTGCGTTT
* * *
69848202 TGGTTAAGAAATCTTGCGGCGCTTTTCACTACTCGCTGCTAATACTATTCTTTAGTAGCGTTTTA
66 TGGTTAAGAAATATTGCGGCGCTTTTCACTACTCGCCGCTAATACTATTCTTTAGCAGCGTTTTA
* *
69848267 ATATAAGTGCCACTACTGGTAGTATACATCAAGACCAAAGCGCTGCGTTTTGGTTAAT
131 ATATAAGCGCCACTACTGCTAGTATACATCAAGACCAAAGCGCTGCGTTTTGGTTAAT
* * *
69848325 ATTTTGCGACGCTTTACAATAAGCGCC
1 ATTTTGCGGCGTTTTCCAATAAGCGCC
69848352 GCTACTACTA
Statistics
Matches: 202, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
188 202 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (188 bp):
ATTTTGCGGCGTTTTCCAATAAGCGCCACTAATCCTAATATACCGCAAGACCAAACTCTGCGTTT
TGGTTAAGAAATATTGCGGCGCTTTTCACTACTCGCCGCTAATACTATTCTTTAGCAGCGTTTTA
ATATAAGCGCCACTACTGCTAGTATACATCAAGACCAAAGCGCTGCGTTTTGGTTAAT
Found at i:69848392 original size:113 final size:114
Alignment explanation
Indices: 69848142--69848567 Score: 464
Period size: 114 Copynumber: 3.7 Consensus size: 114
69848132 TTAATATTTT
* ** *
69848142 GCGGCGTTTTCCA-ATAAGCGCCACTAATCCTAATATACCGCAAGACCAAACTCTGCGTTTTGGT
1 GCGGCGTTTT-AATATAAGCGCCACTAATCCTAATATACATCAAGACCAAACGCTGCGTTTTGGT
* * * *
69848206 TAAGAAATCTTGCGGCGCTTTTCACTACTCGCTGCTAATACTATTCTTTA
65 TAAGAAATATTGCGGCGCTTTTCAATACTCGCCGCTAATACTATACTTTA
** * * ** *
69848256 GTAGCGTTTTAATATAAGTGCCACTACTGGTAGTATACATCAAGACCAAAGCGCTGCGTTTTGGT
1 GCGGCGTTTTAATATAAGCGCCACTAATCCTAATATACATCAAGACCAAA-CGCTGCGTTTTGGT
* * * * ** * * *
69848321 T-A-ATATTTTGCGACGCTTTACAATAAGCGCCGCTACTACTATGCGTTA
65 TAAGAAATATTGCGGCGCTTTTCAATACTCGCCGCTAATACTATACTTTA
* * *
69848369 GCGGCGTTTTTAA-ATAAGCGCCACTAATCCTAATGTACCTCAAGACCAAACTCTGCGTTTTGGT
1 GCGGCG-TTTTAATATAAGCGCCACTAATCCTAATATACATCAAGACCAAACGCTGCGTTTTGGT
*
69848433 TAAGAAATATTGCGGCGCTTTTCAGTACTCGCCGCTAATACTATACTTTA
65 TAAGAAATATTGCGGCGCTTTTCAATACTCGCCGCTAATACTATACTTTA
* ** * *
69848483 GCGGCGTTTGAATATAAGCGCCACTAAGGCTACTATACATCAAGACCAAAGCGCTGCGTTTTGGA
1 GCGGCGTTTTAATATAAGCGCCACTAATCCTAATATACATCAAGACCAAA-CGCTGCGTTTTGGT
** *
69848548 TAAGAGCTTTTGCGGCGCTT
65 TAAGAAATATTGCGGCGCTT
69848568 GGTAGTAAAC
Statistics
Matches: 252, Mismatches: 53, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
112 14 0.06
113 76 0.30
114 119 0.47
115 43 0.17
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (114 bp):
GCGGCGTTTTAATATAAGCGCCACTAATCCTAATATACATCAAGACCAAACGCTGCGTTTTGGTT
AAGAAATATTGCGGCGCTTTTCAATACTCGCCGCTAATACTATACTTTA
Found at i:69851334 original size:23 final size:22
Alignment explanation
Indices: 69851274--69851339 Score: 80
Period size: 23 Copynumber: 2.9 Consensus size: 22
69851264 AGACTCACCA
*
69851274 CAGCTCGTATGAGCTTACCGTTT
1 CAGCTC-TACGAGCTTACCGTTT
69851297 CAGCTCTACGAAGCTTACCGTTT
1 CAGCTCTACG-AGCTTACCGTTT
69851320 CAGCTCAATA-GAGCTTACCG
1 CAGCTC--TACGAGCTTACCG
69851340 ATCATGGCTC
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
22 3 0.08
23 33 0.85
24 1 0.03
25 2 0.05
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (22 bp):
CAGCTCTACGAGCTTACCGTTT
Found at i:69856759 original size:42 final size:43
Alignment explanation
Indices: 69856663--69856777 Score: 153
Period size: 42 Copynumber: 2.7 Consensus size: 43
69856653 TCGAACAATG
* * *
69856663 CCAACGTCCCAGACATGGTCTTACATGTAATCAAATAACGATG
1 CCAATGTCCCAGACATGGTCTTACACGTAATCAAATAACGATA
* * *
69856706 TCACTGTCCCAGACA-GTGTCTTACACGTAATCATAT-ACGATA
1 CCAATGTCCCAGACATG-GTCTTACACGTAATCAAATAACGATA
69856748 CCAATGTCCCAGACATGGTCTTACACGTAA
1 CCAATGTCCCAGACATGGTCTTACACGTAA
69856778 ATCTCAAATC
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
42 32 0.52
43 30 0.48
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (43 bp):
CCAATGTCCCAGACATGGTCTTACACGTAATCAAATAACGATA
Found at i:69856814 original size:86 final size:84
Alignment explanation
Indices: 69856663--69856824 Score: 204
Period size: 86 Copynumber: 1.9 Consensus size: 84
69856653 TCGAACAATG
*
69856663 CCAACGTCCCAGACATGGTCTTACATGTAATCAAATAACGATGTCACTGTCCCAGACAGTGTCTT
1 CCAACGTCCCAGACATGGTCTTACACGTAATCAAAT-ACGATGTCACTGTCCCAGACAGTGTCTT
*
69856728 ACACGTAATCATATACGATA
65 ACACGAAATCATATACGATA
* **
69856748 CCAATGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CGATG-CTGTCGTCCCAGAC-GTGG
1 CCAACGTCCCAGACATGGTCTTACACGT-AA--TCAAATACGATGTCACT-GTCCCAGACAGT-G
69856810 TCTTACACGAAATCA
61 TCTTACACGAAATCA
69856825 CATATTGGAA
Statistics
Matches: 67, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
85 30 0.45
86 31 0.46
88 6 0.09
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (84 bp):
CCAACGTCCCAGACATGGTCTTACACGTAATCAAATACGATGTCACTGTCCCAGACAGTGTCTTA
CACGAAATCATATACGATA
Found at i:69863671 original size:2 final size:2
Alignment explanation
Indices: 69863664--69863689 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
69863654 GCGATCTCGA
69863664 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
69863690 GCCTTGGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:69863778 original size:12 final size:11
Alignment explanation
Indices: 69863742--69863791 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
69863732 GAGGAGAGCT
69863742 TTTTAA-TTTA
1 TTTTAATTTTA
*
69863752 TTTTAATTTAAA
1 TTTTAATTT-TA
69863764 TTTTAAATTTTA
1 TTTT-AATTTTA
*
69863776 TTTTATTTTTA
1 TTTTAATTTTA
69863787 TTTTA
1 TTTTA
69863792 TTTATTTATT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
10 6 0.18
11 13 0.38
12 10 0.29
13 5 0.15
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTAATTTTA
Found at i:69863797 original size:4 final size:4
Alignment explanation
Indices: 69863783--69863825 Score: 77
Period size: 4 Copynumber: 10.5 Consensus size: 4
69863773 TTATTTTATT
69863783 TTTA TTTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
69863826 CAAAACGATA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 34 0.89
5 4 0.11
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:69865178 original size:18 final size:19
Alignment explanation
Indices: 69865145--69865184 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
69865135 TTACACATTG
*
69865145 TGTAATTTGGTATTTTTTT
1 TGTAATTTGGTATTTTTCT
*
69865164 TGTAATTT-TTATTTTTCT
1 TGTAATTTGGTATTTTTCT
69865182 TGT
1 TGT
69865185 GACACTGAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.15, C:0.03, G:0.12, T:0.70
Consensus pattern (19 bp):
TGTAATTTGGTATTTTTCT
Found at i:69869050 original size:19 final size:19
Alignment explanation
Indices: 69869026--69869076 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 19
69869016 GTTTACATAT
69869026 TTTGGCCACTAATGATAAA
1 TTTGGCCACTAATGATAAA
* *
69869045 TTTGGCAGATTAATGATAAA
1 TTTGGC-CACTAATGATAAA
69869065 TTTGGCCACTAA
1 TTTGGCCACTAA
69869077 CGTTTACATG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 10 0.37
20 17 0.63
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (19 bp):
TTTGGCCACTAATGATAAA
Found at i:69875087 original size:20 final size:21
Alignment explanation
Indices: 69875064--69875102 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
69875054 AATTTAGAGA
* *
69875064 ACCCTAAA-CTAATTAAAGTT
1 ACCCAAAATCTAAATAAAGTT
69875084 ACCCAAAATCTAAATAAAG
1 ACCCAAAATCTAAATAAAG
69875103 GCAACGCTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.51, C:0.21, G:0.05, T:0.23
Consensus pattern (21 bp):
ACCCAAAATCTAAATAAAGTT
Found at i:69876493 original size:10 final size:10
Alignment explanation
Indices: 69876480--69876504 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
69876470 AAAAATTAAA
69876480 AAAATATTTT
1 AAAATATTTT
69876490 AAAATATTTT
1 AAAATATTTT
69876500 AAAAT
1 AAAAT
69876505 TAAAAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
AAAATATTTT
Found at i:69876509 original size:16 final size:16
Alignment explanation
Indices: 69876488--69876532 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
69876478 AAAAAATATT
69876488 TTAAAATATTTTAAAA
1 TTAAAATATTTTAAAA
*
69876504 TTAAAAAATTTTTAAAA
1 TTAAAATA-TTTTAAAA
*
69876521 ATAAATATATTT
1 TTAAA-ATATTT
69876533 ATTATATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
16 7 0.29
17 15 0.62
18 2 0.08
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TTAAAATATTTTAAAA
Found at i:69876516 original size:17 final size:18
Alignment explanation
Indices: 69876490--69876525 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
69876480 AAAATATTTT
*
69876490 AAAATATTTTAAAATTAA
1 AAAATATTTTAAAAATAA
69876508 AAAAT-TTTTAAAAATAA
1 AAAATATTTTAAAAATAA
69876525 A
1 A
69876526 TATATTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
AAAATATTTTAAAAATAA
Found at i:69876523 original size:28 final size:30
Alignment explanation
Indices: 69876464--69876520 Score: 93
Period size: 27 Copynumber: 2.0 Consensus size: 30
69876454 ACCAAAAATT
69876464 TATTTTAAAAATTAAAAAAATATTTTAAAA
1 TATTTTAAAAATTAAAAAAATATTTTAAAA
69876494 TATTTT-AAAATT-AAAAAAT-TTTTAAAA
1 TATTTTAAAAATTAAAAAAATATTTTAAAA
69876521 ATAAATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
27 8 0.30
28 7 0.26
29 6 0.22
30 6 0.22
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (30 bp):
TATTTTAAAAATTAAAAAAATATTTTAAAA
Found at i:69876883 original size:10 final size:10
Alignment explanation
Indices: 69876865--69876970 Score: 67
Period size: 10 Copynumber: 10.7 Consensus size: 10
69876855 GAGGGAAAGG
69876865 AGAAGAAAGAA
1 AGAA-AAAGAA
69876876 AGAAAAAGAA
1 AGAAAAAGAA
69876886 AGAAAAAGAA
1 AGAAAAAGAA
* *
69876896 GGAAAGA-AA
1 AGAAAAAGAA
* *
69876905 AGGAAAGGAGA
1 AGAAAAAGA-A
69876916 AGAAAAA-AA
1 AGAAAAAGAA
*
69876925 A-AGAAAG-A
1 AGAAAAAGAA
*
69876933 AGAAGAAGAA
1 AGAAAAAGAA
** *
69876943 GAGGGAAGGAA
1 -AGAAAAAGAA
*
69876954 GGAAAAAGAA
1 AGAAAAAGAA
69876964 AGAAAAA
1 AGAAAAA
69876971 AAGAAGTAAA
Statistics
Matches: 69, Mismatches: 20, Indels: 13
0.68 0.20 0.13
Matches are distributed among these distances:
8 6 0.09
9 11 0.16
10 36 0.52
11 16 0.23
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (10 bp):
AGAAAAAGAA
Found at i:69876919 original size:34 final size:34
Alignment explanation
Indices: 69876881--69876973 Score: 104
Period size: 34 Copynumber: 2.8 Consensus size: 34
69876871 AAGAAAGAAA
*
69876881 AAGAAAGAAAAAGAAGGAAAGAAAAGGAA-AGGAG
1 AAGAAAGAAAAAGAAAGAAAGAAAAGGAAGAGG-G
*
69876915 AAGAAAAAAAAAGAAAG-AAGAAGAA-GAAGAGGG
1 AAGAAAGAAAAAGAAAGAAAGAA-AAGGAAGAGGG
*
69876948 AAGGAAGGAAAAAGAAAGAAA-AAAAG
1 AA-GAAAGAAAAAGAAAGAAAGAAAAG
69876974 AAGTAAAGGT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
33 13 0.26
34 35 0.70
35 2 0.04
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (34 bp):
AAGAAAGAAAAAGAAAGAAAGAAAAGGAAGAGGG
Found at i:69876919 original size:44 final size:44
Alignment explanation
Indices: 69876870--69876970 Score: 125
Period size: 44 Copynumber: 2.3 Consensus size: 44
69876860 AAAGGAGAAG
69876870 AAAGAAAGAAAAAGAAAGAAAAAGAAGGAA-AGAAAAGGAAAGG-A
1 AAAGAAAGAAAAAGAAAGAAAAAGAA-GAAGAGAAAAGG-AAGGAA
* * * **
69876914 GAAGAAAAAAAAAGAAAGAAGAAGAAGAAGAGGGAAGGAAGGAA
1 AAAGAAAGAAAAAGAAAGAAAAAGAAGAAGAGAAAAGGAAGGAA
69876958 AAAGAAAGAAAAA
1 AAAGAAAGAAAAA
69876971 AAGAAGTAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
43 7 0.15
44 41 0.85
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (44 bp):
AAAGAAAGAAAAAGAAAGAAAAAGAAGAAGAGAAAAGGAAGGAA
Found at i:69877539 original size:16 final size:15
Alignment explanation
Indices: 69877513--69877542 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
69877503 GTACTGAAAT
69877513 AATATAAAATAATAA
1 AATATAAAATAATAA
69877528 AATATGAAAATAATA
1 AATAT-AAAATAATA
69877543 TATTTTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (15 bp):
AATATAAAATAATAA
Found at i:69877896 original size:296 final size:299
Alignment explanation
Indices: 69877304--69878040 Score: 923
Period size: 296 Copynumber: 2.4 Consensus size: 299
69877294 AAAAATTGTA
* *
69877304 TATTTAAAAAACACACTAAATTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATG
1 TATTAAAAAAACACACTAAATTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
* * *
69877369 AAATTAGAAAATATGATATTTTTTAAAGTAATAAAATGCGAAGAAAAAAATACAAACAAAGGGCC
66 AAATTAGAAAATATGATATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCC
*
69877434 GAAGTAAGAGTTTTTTACTAAATTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACA
131 GAAGTAAGAG--------T---TTTTTTAAAAATTCAGAAATAATTAATAC--A-ACTTCAAACA
* * * *
69877499 AAATGTACTGAAATAATATAAAATAATAAAATATGAAAATAATATATTTTTATTGAAAGTAATAA
182 AAATGTACTAAAATAAAATAAAATAATAAAATACGAAAATAATATATTTTGATTGAAAGTAATAA
* ** *
69877564 AATTCGGGAAAATAATACGAGCAAAAGACAGAAATAAGAGTTTTTTTTTAATT
247 AATTCGGGAAAATAATACGAACAAAAGACAGAAATAAGAGTTTTTTACTAAAT
* *
69877617 TATTCAAAAAACACACTAAATTAATAAATTTCAAACATAATGTACTGAAATAATGTAAAATAATA
1 TATTAAAAAAACACACTAAATTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
*
69877682 AAATTAG-AAATATGATATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGTC
66 AAATTAGAAAATATGATATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCC
* *
69877746 GAAGTATGAG-TTTTTTAAAAATTCAGAAATAATTAATAC-ACTTCAAACATAATGTACTAAAAT
131 GAAGTAAGAGTTTTTTTAAAAATTCAGAAATAATTAATACAACTTCAAACAAAATGTACTAAAAT
* * *
69877809 AAAATAAAATAATAAAATGCGAAAATAATATATTTTGATTGAATGTAATAAAATTTGGGAAAATA
196 AAAATAAAATAATAAAATACGAAAATAATATATTTTGATTGAAAGTAATAAAATTCGGGAAAATA
* * * *
69877874 ATACGAACAAATGGCCGAAATAAGGGTTTTTTACTAAAT
261 ATACGAACAAAAGACAGAAATAAGAGTTTTTTACTAAAT
* * * * *
69877913 TA-AAAAAAAACAGA-AATAATTAATACACTTCAAACATAATGTACTAAAATAATGTAAAATAAT
1 TATTAAAAAAACACACTA-AATTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAAT
* * * *
69877976 AAAA-TACGAAAATAAT-ATATTTTTATTAAAAGTAATAAAATTCGG-GAAAATAGTACGAATAA
65 AAAATTA-GAAAAT-ATGATA-TTTT-TT-AAAGTAATAAAATGCGGAGAAAAAAATACGAACAA
69878038 ATG
125 ATG
69878041 ACTGAAATAA
Statistics
Matches: 381, Mismatches: 36, Indels: 29
0.85 0.08 0.07
Matches are distributed among these distances:
294 3 0.01
295 57 0.15
296 120 0.31
297 6 0.02
298 19 0.05
299 16 0.04
300 29 0.08
312 62 0.16
313 69 0.18
ACGTcount: A:0.53, C:0.07, G:0.10, T:0.30
Consensus pattern (299 bp):
TATTAAAAAAACACACTAAATTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
AAATTAGAAAATATGATATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCC
GAAGTAAGAGTTTTTTTAAAAATTCAGAAATAATTAATACAACTTCAAACAAAATGTACTAAAAT
AAAATAAAATAATAAAATACGAAAATAATATATTTTGATTGAAAGTAATAAAATTCGGGAAAATA
ATACGAACAAAAGACAGAAATAAGAGTTTTTTACTAAAT
Found at i:69877927 original size:154 final size:154
Alignment explanation
Indices: 69877322--69878064 Score: 636
Period size: 154 Copynumber: 4.9 Consensus size: 154
69877312 AAACACACTA
* * ** *
69877322 AATTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATGAAATTA-GAAAAT-ATGA
1 AATTAATACACTTCAAACATAATGTACTAAAATAAAATAAAATAAT-AAAATACGAAAATAAT-A
* * * * * * *
69877385 TATTTT--TT-AAAGTAATAAAATGCGAAGAAAAAAATACAAACAAAGGGCCGAAGT-AAGAGTT
64 TATTTTGATTAAAAGTAATAAAATTCG-GGAAAATAATACGAACAAATGACCGAAATAAAGA-TT
** **
69877446 TTTTACTAAATTTTTTAAAAATTCAGAAAT
127 TTTTACTAAA--TTAAAAAAAAACAGAAAT
* * * * *
69877476 AATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAATAATAAAATATGAAAATAA
1 AATTAATAC----ACTTCAAACATAATGTACTAAAATAAAATAAAATAATAAAATACGAAAATAA
* * * * *
69877541 TATATTTTTATTGAAAGTAATAAAATTCGGGAAAATAATACGAGCAAAAGACAGAAAT-AAGAGT
62 TATATTTTGATTAAAAGTAATAAAATTCGGGAAAATAATACGAACAAATGACCGAAATAAAGA-T
** * ** * *
69877605 TTTTTTTTAATTTATTCAAAAAACA-CACT
126 TTTTTACTAAATTA-AAAAAAAACAGAAAT
* * * **
69877634 AAATTAATAAATTTCAAACATAATGTACTGAAATAATGTAAAATAATAAAATTA-G-AAAT-ATG
1 -AATTAATACACTTCAAACATAATGTACTAAAATAAAATAAAATAATAAAA-TACGAAAATAAT-
* * ** * *
69877696 ATATTTT--TT-AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGTCGAAGT-ATGAGT
63 ATATTTTGATTAAAAGTAATAAAATTCGG-GAAAATAATACGAACAAATGACCGAAATAAAGA-T
*
69877757 TTTTTA-AAAATT---------CAGAAAT
126 TTTTTACTAAATTAAAAAAAAACAGAAAT
*
69877776 AATTAATACACTTCAAACATAATGTACTAAAATAAAATAAAATAATAAAATGCGAAAATAATATA
1 AATTAATACACTTCAAACATAATGTACTAAAATAAAATAAAATAATAAAATACGAAAATAATATA
* * * * * *
69877841 TTTTGATTGAATGTAATAAAATTTGGGAAAATAATACGAACAAATGGCCGAAATAAGGGTTTTTT
66 TTTTGATTAAAAGTAATAAAATTCGGGAAAATAATACGAACAAATGACCGAAATAAAGATTTTTT
69877906 ACTAAATTAAAAAAAAACAGAAAT
131 ACTAAATTAAAAAAAAACAGAAAT
**
69877930 AATTAATACACTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATACGAAAATAATATA
1 AATTAATACACTTCAAACATAATGTACTAAAATAAAATAAAATAATAAAATACGAAAATAATATA
* * * *
69877995 TTTTTATTAAAAGTAATAAAATTCGGGAAAATAGTACGAATAAATGACTGAAATAAAGATTTTTT
66 TTTTGATTAAAAGTAATAAAATTCGGGAAAATAATACGAACAAATGACCGAAATAAAGATTTTTT
69878060 ACTAA
131 ACTAA
69878065 TTTTTTTTGA
Statistics
Matches: 489, Mismatches: 68, Indels: 64
0.79 0.11 0.10
Matches are distributed among these distances:
140 1 0.00
141 48 0.10
142 13 0.03
143 2 0.00
144 34 0.07
145 21 0.04
151 20 0.04
152 33 0.07
153 2 0.00
154 148 0.30
155 40 0.08
156 2 0.00
157 5 0.01
158 51 0.10
159 17 0.03
160 37 0.08
161 15 0.03
ACGTcount: A:0.52, C:0.07, G:0.10, T:0.30
Consensus pattern (154 bp):
AATTAATACACTTCAAACATAATGTACTAAAATAAAATAAAATAATAAAATACGAAAATAATATA
TTTTGATTAAAAGTAATAAAATTCGGGAAAATAATACGAACAAATGACCGAAATAAAGATTTTTT
ACTAAATTAAAAAAAAACAGAAAT
Found at i:69879236 original size:37 final size:37
Alignment explanation
Indices: 69879184--69879318 Score: 105
Period size: 37 Copynumber: 3.6 Consensus size: 37
69879174 TACTCAAAAT
*
69879184 AATACTAACTAACAATAATAATTAGGGTTTTACTAAA
1 AATAATAACTAACAATAATAATTAGGGTTTTACTAAA
** ***
69879221 AATAATAACTAACAATAAT-A-TAATGTAAAAACTAACA
1 AATAATAACTAACAATAATAATTAGGGT-TTTACTAA-A
* *
69879258 ATCATACTAACTAA-AATAATAATTAGGGTTTTTACTAAT
1 A--ATAATAACTAACAATAATAATTAGGG-TTTTACTAAA
** *
69879297 CCTAATAACTAACCATAATAAT
1 AATAATAACTAACAATAATAAT
69879319 AATATTAGTT
Statistics
Matches: 73, Mismatches: 17, Indels: 15
0.70 0.16 0.14
Matches are distributed among these distances:
35 4 0.05
36 6 0.08
37 29 0.40
38 14 0.19
39 11 0.15
40 8 0.11
41 1 0.01
ACGTcount: A:0.51, C:0.13, G:0.05, T:0.31
Consensus pattern (37 bp):
AATAATAACTAACAATAATAATTAGGGTTTTACTAAA
Found at i:69879272 original size:23 final size:23
Alignment explanation
Indices: 69879227--69879273 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
69879217 TAAAAATAAT
*
69879227 AACTAACAATAATATAATGTAAA
1 AACTAACAATAATATAATCTAAA
*
69879250 AACTAACAATCATACTAA-CTAAA
1 AACTAACAATAATA-TAATCTAAA
69879273 A
1 A
69879274 TAATAATTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 18 0.86
24 3 0.14
ACGTcount: A:0.60, C:0.15, G:0.02, T:0.23
Consensus pattern (23 bp):
AACTAACAATAATATAATCTAAA
Found at i:69879349 original size:41 final size:40
Alignment explanation
Indices: 69879168--69879358 Score: 125
Period size: 40 Copynumber: 4.8 Consensus size: 40
69879158 AATAATACTA
69879168 GTTTTATACTCAA-AATAATACTAACTAACAATAATAATTAGG
1 GTTTT-TACT-AACAATAATACTAACTAA-AATAATAATTAGG
*
69879210 G-TTTTACTAAAAATAATAACTAAC-AATAAT-ATAA-T---
1 GTTTTTACTAACAATAAT-ACTAACTAA-AATAATAATTAGG
**** *
69879245 GTAAAAACTAACAATCATACTAACTAAAATAATAATTAGG
1 GTTTTTACTAACAATAATACTAACTAAAATAATAATTAGG
*
69879285 GTTTTTACTAATC-CTAATAACTAACCATAATAATAAT-ATTA-G
1 GTTTTTACTAA-CAATAAT-ACTAA-C-TAA-AATAATAATTAGG
* * *
69879327 TTTTTTACTAACAATAATACTAAGTAATATAA
1 GTTTTTACTAACAATAATACTAACTAAAATAA
69879359 ATTATTAATC
Statistics
Matches: 117, Mismatches: 17, Indels: 34
0.70 0.10 0.20
Matches are distributed among these distances:
35 10 0.09
36 16 0.14
37 1 0.01
38 5 0.04
39 9 0.08
40 25 0.21
41 21 0.18
42 17 0.15
43 7 0.06
44 6 0.05
ACGTcount: A:0.49, C:0.12, G:0.05, T:0.34
Consensus pattern (40 bp):
GTTTTTACTAACAATAATACTAACTAAAATAATAATTAGG
Found at i:69882218 original size:48 final size:47
Alignment explanation
Indices: 69882150--69882250 Score: 121
Period size: 48 Copynumber: 2.1 Consensus size: 47
69882140 ATGAGATAAC
* * *
69882150 TTAAAATAATAATACCTAATAGCTTTAAAACAACAGTACATAATAAAA
1 TTAAAACAATAATACATAATAGATTTAAAACAA-AGTACATAATAAAA
* * * * *
69882198 TTAAAACAATTATACATAATAGATTTAAAAGAATGTACATAATGAAT
1 TTAAAACAATAATACATAATAGATTTAAAACAAAGTACATAATAAAA
69882245 TTAAAA
1 TTAAAA
69882251 TAACAAAACA
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
47 17 0.38
48 28 0.62
ACGTcount: A:0.55, C:0.09, G:0.06, T:0.30
Consensus pattern (47 bp):
TTAAAACAATAATACATAATAGATTTAAAACAAAGTACATAATAAAA
Found at i:69882240 original size:23 final size:24
Alignment explanation
Indices: 69882166--69882250 Score: 84
Period size: 24 Copynumber: 3.6 Consensus size: 24
69882156 TAATAATACC
* *
69882166 TAATAGCTTTAAAACAACAGTACA
1 TAATAGATTTAAAACAACTGTACA
* * * *
69882190 TAATAAAATTAAAACAATTATACA
1 TAATAGATTTAAAACAACTGTACA
*
69882214 TAATAGATTTAAAAGAA-TGTACA
1 TAATAGATTTAAAACAACTGTACA
69882237 TAAT-GAATTTAAAA
1 TAATAG-ATTTAAAA
69882251 TAACAAAACA
Statistics
Matches: 50, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
22 1 0.02
23 17 0.34
24 32 0.64
ACGTcount: A:0.55, C:0.08, G:0.07, T:0.29
Consensus pattern (24 bp):
TAATAGATTTAAAACAACTGTACA
Found at i:69884620 original size:21 final size:21
Alignment explanation
Indices: 69884591--69884634 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
69884581 GTATATGTGA
* * *
69884591 ATTATAAAATATATATAATAT
1 ATTAAAAAATATAAAGAATAT
69884612 ATTAAAAAATATAAAGAATAT
1 ATTAAAAAATATAAAGAATAT
69884633 AT
1 AT
69884635 AAATATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (21 bp):
ATTAAAAAATATAAAGAATAT
Found at i:69884654 original size:16 final size:16
Alignment explanation
Indices: 69884629--69884665 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
69884619 AATATAAAGA
* *
69884629 ATATATAAATATGTAT
1 ATATAAAAATATGTAC
69884645 ATATAAAAATATGTAC
1 ATATAAAAATATGTAC
69884661 ATATA
1 ATATA
69884666 CGTGGGTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (16 bp):
ATATAAAAATATGTAC
Found at i:69884851 original size:3 final size:3
Alignment explanation
Indices: 69884835--69884876 Score: 57
Period size: 3 Copynumber: 13.7 Consensus size: 3
69884825 AAAATAAAAC
* *
69884835 TAA TAA TAGT TAA TAA TAA TAA TAA TAA TAA CAA TAA TAA TA
1 TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
69884877 GGACTAAATC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
3 32 0.94
4 2 0.06
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:69888900 original size:84 final size:84
Alignment explanation
Indices: 69888752--69888906 Score: 224
Period size: 84 Copynumber: 1.8 Consensus size: 84
69888742 ATAGGACATG
* ** **
69888752 TGGCATTTTTTTTAACTCCTTTGTGGAGTTAAAAAATTGTATTGCTAGTGTACTGAATTCGAACC
1 TGGCATTTTTTTTAACTCCTTTATGGAGTTAAAAAATTCCATTGCTAGTGTACCAAATTCGAACC
69888817 CTATATATATGAAGCAATT
66 CTATATATATGAAGCAATT
*
69888836 TGGCAGTTTTTTTT-ACT-CTGTTATGGAGTTAAAAAATTCCATTGCTAGTGTACCAAATTTGAA
1 TGGCA-TTTTTTTTAACTCCT-TTATGGAGTTAAAAAATTCCATTGCTAGTGTACCAAATTCGAA
69888899 CCCTATAT
64 CCCTATAT
69888907 GTGTCTGTGT
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
83 2 0.03
84 53 0.84
85 8 0.13
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (84 bp):
TGGCATTTTTTTTAACTCCTTTATGGAGTTAAAAAATTCCATTGCTAGTGTACCAAATTCGAACC
CTATATATATGAAGCAATT
Done.