Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 232 of 240
Found at i:69898266 original size:13 final size:12
Alignment explanation
Indices: 69898244--69898269 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
69898234 TTTGGCTTAT
69898244 ATGTAAAAAAAA
1 ATGTAAAAAAAA
69898256 ATGTAAAAAAAA
1 ATGTAAAAAAAA
69898268 AT
1 AT
69898270 CAATTAAGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.73, C:0.00, G:0.08, T:0.19
Consensus pattern (12 bp):
ATGTAAAAAAAA
Found at i:69898442 original size:9 final size:9
Alignment explanation
Indices: 69898428--69898538 Score: 59
Period size: 9 Copynumber: 12.3 Consensus size: 9
69898418 AAGAAATGAT
69898428 TAAAAATTA
1 TAAAAATTA
*
69898437 TAAAAATCA
1 TAAAAATTA
* *
69898446 GAAAAAATA
1 TAAAAATTA
*
69898455 GAAAAA-TA
1 TAAAAATTA
*
69898463 TTAAAATTGA
1 TAAAAATT-A
*
69898473 TATAAATTTA
1 TA-AAAATTA
*
69898483 TTAAAATTA
1 TAAAAATTA
*
69898492 TAAAAAAATA
1 T-AAAAATTA
*
69898502 TAAAACTTA
1 TAAAAATTA
*
69898511 -AAAGTATTA
1 TAAA-AATTA
69898520 T-AAAA-TA
1 TAAAAATTA
*
69898527 TAAAAAATA
1 TAAAAATTA
69898536 TAA
1 TAA
69898539 TAATAATTTT
Statistics
Matches: 77, Mismatches: 17, Indels: 16
0.70 0.15 0.15
Matches are distributed among these distances:
7 3 0.04
8 14 0.18
9 44 0.57
10 11 0.14
11 5 0.06
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (9 bp):
TAAAAATTA
Found at i:69898577 original size:10 final size:10
Alignment explanation
Indices: 69898562--69898594 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
69898552 ATATATGTCT
69898562 TTTTTTATAA
1 TTTTTTATAA
69898572 TTTTTTAT-A
1 TTTTTTATAA
*
69898581 TGTTTTATAA
1 TTTTTTATAA
69898591 TTTT
1 TTTT
69898595 GATAGGAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
9 8 0.40
10 12 0.60
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:69906616 original size:12 final size:12
Alignment explanation
Indices: 69906599--69906625 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
69906589 TTAACTGTAA
69906599 AAATTAAAAATT
1 AAATTAAAAATT
69906611 AAATTAAAAATT
1 AAATTAAAAATT
69906623 AAA
1 AAA
69906626 AAAAATCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (12 bp):
AAATTAAAAATT
Found at i:69906627 original size:8 final size:7
Alignment explanation
Indices: 69906596--69906627 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
69906586 TCTTTAACTG
69906596 TAAAAAT
1 TAAAAAT
69906603 TAAAAAT
1 TAAAAAT
69906610 T--AAAT
1 TAAAAAT
69906615 TAAAAAT
1 TAAAAAT
69906622 TAAAAA
1 TAAAAA
69906628 AAATCCCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
5 5 0.22
7 18 0.78
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
TAAAAAT
Found at i:69908261 original size:169 final size:169
Alignment explanation
Indices: 69907965--69908282 Score: 462
Period size: 169 Copynumber: 1.9 Consensus size: 169
69907955 TGTATACCAT
* *
69907965 TGAATTTGTTAAACATTTCATAGATCATTAGCATTGGATGTTATGTCACGTACGTTGTATATGAA
1 TGAATTTGTTAAACATTTCATAGATCATTAGCATTGGATGTTATGTCACGTACATTGCATATGAA
** ** * *
69908030 TATGTGTTGTCGGTGTTGGTTTCAGAATTATATTTGATGTATCAACTTGGTTATTGATCTCTGCA
66 TACCTGTAATCGGTATTGGTTTCAGAATTATATTTGATGTATCAACTTGGTTATTAATCTCTGCA
*
69908095 TTCATATAACCATTGTTGTTGTTTATACGGTTTTCTGAC
131 TTCATATAACAATTGTTGTTGTTTATACGGTTTTCTGAC
* *
69908134 TGAA-TTGTTCAACATTTCATAGATCAATTA-CTATTGGATGTTATGTCACGTATATTGCATAT-
1 TGAATTTGTTAAACATTTCATAGATC-ATTAGC-ATTGGATGTTATGTCACGTACATTGCATATG
* *
69908196 AAGTACCTGTAATCGGTATTGGTTTGAGAATTATTTTTGATGTATCAACTTGGTTATTAATCTCT
64 AA-TACCTGTAATCGGTATTGGTTTCAGAATTATATTTGATGTATCAACTTGGTTATTAATCTCT
*
69908261 GCATTCATATAATAATTGTTGT
128 GCATTCATATAACAATTGTTGT
69908283 AGTTATTTAT
Statistics
Matches: 132, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
168 23 0.17
169 109 0.83
ACGTcount: A:0.26, C:0.12, G:0.18, T:0.44
Consensus pattern (169 bp):
TGAATTTGTTAAACATTTCATAGATCATTAGCATTGGATGTTATGTCACGTACATTGCATATGAA
TACCTGTAATCGGTATTGGTTTCAGAATTATATTTGATGTATCAACTTGGTTATTAATCTCTGCA
TTCATATAACAATTGTTGTTGTTTATACGGTTTTCTGAC
Found at i:69909422 original size:3 final size:3
Alignment explanation
Indices: 69909416--69909453 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
69909406 TAATCATCAT
* *
69909416 CAC CAC CAC CAC CAC CAC CAT CAC CAC CAC CAT CAC CA
1 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CA
69909454 TCATCACCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.34, C:0.61, G:0.00, T:0.05
Consensus pattern (3 bp):
CAC
Found at i:69909433 original size:12 final size:12
Alignment explanation
Indices: 69909410--69909453 Score: 70
Period size: 12 Copynumber: 3.7 Consensus size: 12
69909400 CCACAGTAAT
*
69909410 CATCATCACCAC
1 CATCACCACCAC
*
69909422 CACCACCACCAC
1 CATCACCACCAC
69909434 CATCACCACCAC
1 CATCACCACCAC
69909446 CATCACCA
1 CATCACCA
69909454 TCATCACCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.34, C:0.57, G:0.00, T:0.09
Consensus pattern (12 bp):
CATCACCACCAC
Found at i:69909458 original size:9 final size:9
Alignment explanation
Indices: 69909410--69909463 Score: 51
Period size: 9 Copynumber: 6.3 Consensus size: 9
69909400 CCACAGTAAT
69909410 CATCATCAC
1 CATCATCAC
69909419 CA-C--CAC
1 CATCATCAC
* *
69909425 CACCACCAC
1 CATCATCAC
*
69909434 CATCACCAC
1 CATCATCAC
*
69909443 CACCATCAC
1 CATCATCAC
69909452 CATCATCAC
1 CATCATCAC
69909461 CAT
1 CAT
69909464 AGTGCTGATC
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
6 5 0.13
7 1 0.03
8 1 0.03
9 31 0.82
ACGTcount: A:0.33, C:0.54, G:0.00, T:0.13
Consensus pattern (9 bp):
CATCATCAC
Found at i:69911154 original size:29 final size:30
Alignment explanation
Indices: 69911122--69911180 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
69911112 ACCAATAAAA
69911122 GCCG-TTTTTTTCAAAT-TTTACCGAAATGG
1 GCCGATTTTTTT-AAATATTTACCGAAATGG
* *
69911151 GCCGATTTTTTTAATTATTTACCGGAATGG
1 GCCGATTTTTTTAAATATTTACCGAAATGG
69911181 ACTATTTTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 7 0.27
30 19 0.73
ACGTcount: A:0.24, C:0.15, G:0.19, T:0.42
Consensus pattern (30 bp):
GCCGATTTTTTTAAATATTTACCGAAATGG
Found at i:69913010 original size:13 final size:13
Alignment explanation
Indices: 69912992--69913016 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69912982 TTTAAAAATA
69912992 TTTTTATTTTTAT
1 TTTTTATTTTTAT
69913005 TTTTTATTTTTA
1 TTTTTATTTTTA
69913017 AAATATTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTTATTTTTAT
Found at i:69925012 original size:30 final size:30
Alignment explanation
Indices: 69924971--69925034 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
69924961 GGGGCCAAAC
* *
69924971 TAATAAAAAAAAGTACAA-TAGTCAAATTGA
1 TAATAAAAAAAAATACAAGTA-TCAAAGTGA
*
69925001 TAATAATAAAAAATACAAGTATCAAAGTGA
1 TAATAAAAAAAAATACAAGTATCAAAGTGA
69925031 TAAT
1 TAAT
69925035 TTAGCTATAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
30 28 0.93
31 2 0.07
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.25
Consensus pattern (30 bp):
TAATAAAAAAAAATACAAGTATCAAAGTGA
Found at i:69925611 original size:22 final size:23
Alignment explanation
Indices: 69925586--69925628 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
69925576 GAATTTTTGA
* *
69925586 ATTATCTTATTT-TTATAAAATC
1 ATTATATTATTTATTAAAAAATC
69925608 ATTATATTATTTATTAAAAAA
1 ATTATATTATTTATTAAAAAA
69925629 ACACTAATAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (23 bp):
ATTATATTATTTATTAAAAAATC
Found at i:69933518 original size:46 final size:46
Alignment explanation
Indices: 69933468--69933707 Score: 291
Period size: 46 Copynumber: 5.3 Consensus size: 46
69933458 TGACAAGTGG
* * * *
69933468 AAAGTAATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAGAC
*
69933514 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAGAC
*
69933560 AAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 ------AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAGAC
**
69933612 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAGAC
69933658 AAAGTG---A-T-A-AG--T-GGCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAGAC
69933695 AAAGTGATAAGTG
1 AAAGTGATAAGTG
69933708 GCTACACTTA
Statistics
Matches: 174, Mismatches: 9, Indels: 26
0.83 0.04 0.12
Matches are distributed among these distances:
37 30 0.17
38 1 0.01
40 3 0.02
41 2 0.01
42 1 0.01
43 1 0.01
46 92 0.53
52 44 0.25
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.28
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAGAC
Found at i:69933522 original size:98 final size:98
Alignment explanation
Indices: 69933402--69933669 Score: 446
Period size: 98 Copynumber: 2.7 Consensus size: 98
69933392 TTTGAGTACT
*
69933402 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
69933467 GAAAGTAATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTAATAAGTAATAGCTTCGGCTATACTTA
**
69933500 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
* *
69933565 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTAATAAGTAATAGCTTCGGCTATACTTA
* *
69933598 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
69933663 GATAAGT
65 GAAAAGT
69933670 GGCTACACTT
Statistics
Matches: 158, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
98 148 0.94
99 10 0.06
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTAATAAGTAATAGCTTCGGCTATACTTA
Found at i:69933678 original size:37 final size:37
Alignment explanation
Indices: 69933634--69933762 Score: 240
Period size: 37 Copynumber: 3.5 Consensus size: 37
69933624 GATAGCTTTA
69933634 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
69933671 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
69933708 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
69933745 GCTACACTTATCTGATCA
1 GCTACACTTATCTGATCA
69933763 GTGATAAGTG
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 90 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:69935713 original size:118 final size:116
Alignment explanation
Indices: 69935519--69935746 Score: 341
Period size: 118 Copynumber: 1.9 Consensus size: 116
69935509 ACACAAATTC
* * *
69935519 ATGGATCAATGCTGCAATGGGAGAATTTAACCTAAAACAAATATGTATTTTCATGGATAAATAAT
1 ATGGATCAAAGCTGCAATGGGAGAAATTAACCCAAAACAAATATGTATTTTCATGGATAAATAAT
*
69935584 ATCGAATTACCCCAAAACAAATTCATTGTTGTTCAAATGAATCCCCTCTTA
66 ATCGAAATACCCCAAAACAAATTCATTGTTGTTCAAATGAATCCCCTCTTA
* *
69935635 ATGGCATCAAAGCTGCAATGGGAGAAGAATTACCCCAAAACAAATATGTA-TTTCATGGATCAAT
1 ATGG-ATCAAAGCTGCAATGGGAG-A-AATTAACCCAAAACAAATATGTATTTTCATGGATAAAT
* * *
69935699 AATTTTGAAATACCCCAACACAAATTCATTGTTGTTCAAATGAATCCC
63 AATATCGAAATACCCCAAAACAAATTCATTGTTGTTCAAATGAATCCC
69935747 TCAAATCAAT
Statistics
Matches: 100, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
116 4 0.04
117 18 0.18
118 58 0.58
119 20 0.20
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (116 bp):
ATGGATCAAAGCTGCAATGGGAGAAATTAACCCAAAACAAATATGTATTTTCATGGATAAATAAT
ATCGAAATACCCCAAAACAAATTCATTGTTGTTCAAATGAATCCCCTCTTA
Found at i:69940018 original size:26 final size:25
Alignment explanation
Indices: 69939968--69940025 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 25
69939958 ATAGATATAT
*
69939968 TTTTTAAAATTTTTTAATTTTAAATA
1 TTTTTAAAATTTTTT-ATTTAAAATA
*
69939994 TTTTTAAAATACTTTTT-TTTAAAATT
1 TTTTTAAAAT--TTTTTATTTAAAATA
69940020 TTTTTA
1 TTTTTA
69940026 TTTTTAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 23 0.82
28 5 0.18
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (25 bp):
TTTTTAAAATTTTTTATTTAAAATA
Found at i:69940024 original size:15 final size:16
Alignment explanation
Indices: 69939992--69940036 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
69939982 TAATTTTAAA
69939992 TATTTTTAAAATACTT
1 TATTTTTAAAATACTT
**
69940008 T-TTTTTAAAATTTTTT
1 TATTTTTAAAA-TACTT
69940024 TATTTTTAAAATA
1 TATTTTTAAAATA
69940037 AATCTTTGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
15 9 0.38
16 6 0.25
17 9 0.38
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (16 bp):
TATTTTTAAAATACTT
Found at i:69949565 original size:85 final size:85
Alignment explanation
Indices: 69949419--69949641 Score: 306
Period size: 85 Copynumber: 2.6 Consensus size: 85
69949409 CTGGTGGTAT
* *
69949419 AATCGAATCGAGCCGAATTTAATTAATAACGGGTAAATTATACGGATAGTTATTCGATTATT-G-
1 AATCGAGTCGAGCC-AATTTAATTAATAA-GGGTAAATTATACCGATAGTTATTCGATTATTGGT
69949482 GATTTGACACAAAAGATACAAA
64 GATTTGACACAAAAGATACAAA
* * *
69949504 AATCGAGTCAAGCCAATTTTAATTAATAATAGGTAAATTATACCGATAGTTATTCGGTTATTGGT
1 AATCGAGTCGAGCCAA-TTTAATTAATAA-GGGTAAATTATACCGATAGTTATTCGATTATTGGT
*
69949569 GATTTGTCACAAAAGATACAAA
64 GATTTGACACAAAAGATACAAA
* **
69949591 AATCGAGTCGAGACGAATTTAATTAATAAGGGTAAATTATATTGATAGTTA
1 AATCGAGTCGAG-CCAATTTAATTAATAAGGGTAAATTATACCGATAGTTA
69949642 CTCAACTATT
Statistics
Matches: 122, Mismatches: 12, Indels: 7
0.87 0.09 0.05
Matches are distributed among these distances:
84 2 0.02
85 53 0.43
86 20 0.16
87 44 0.36
88 3 0.02
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.32
Consensus pattern (85 bp):
AATCGAGTCGAGCCAATTTAATTAATAAGGGTAAATTATACCGATAGTTATTCGATTATTGGTGA
TTTGACACAAAAGATACAAA
Found at i:69952580 original size:18 final size:18
Alignment explanation
Indices: 69952544--69952580 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
69952534 AAATACTTTA
*
69952544 AAAATATTTTTTATTTTT
1 AAAATATTTTTTATGTTT
*
69952562 AAAATATTTTTTGTGTTT
1 AAAATATTTTTTATGTTT
69952580 A
1 A
69952581 TTAAAAATCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
AAAATATTTTTTATGTTT
Found at i:69958631 original size:52 final size:52
Alignment explanation
Indices: 69958529--69958633 Score: 129
Period size: 52 Copynumber: 2.0 Consensus size: 52
69958519 TTTTTTTAAC
* * * **
69958529 TTTTAGAATTAGAAATAAATTGACAGATTTTGTAAATATTGAGGGTTAAATT
1 TTTTAGAATTAGAAATAAAATGACAAATCTTGTAAATATTGAGGCCTAAATT
* * * *
69958581 TTTTATAATTAGAATTAAAATGATAAATCTTGTAAATATTGATGCCTAAATT
1 TTTTAGAATTAGAAATAAAATGACAAATCTTGTAAATATTGAGGCCTAAATT
69958633 T
1 T
69958634 GTTGGATTTT
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.41, C:0.04, G:0.13, T:0.42
Consensus pattern (52 bp):
TTTTAGAATTAGAAATAAAATGACAAATCTTGTAAATATTGAGGCCTAAATT
Found at i:69961447 original size:14 final size:14
Alignment explanation
Indices: 69961428--69961470 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
69961418 AAAAATAATC
69961428 AATATTTTTTATAT
1 AATATTTTTTATAT
*
69961442 AATA-TTTTTAAAT
1 AATATTTTTTATAT
*
69961455 ATATATTTTGTATAT
1 A-ATATTTTTTATAT
69961470 A
1 A
69961471 GAATTTTAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
13 9 0.38
14 7 0.29
15 8 0.33
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (14 bp):
AATATTTTTTATAT
Found at i:69964091 original size:25 final size:25
Alignment explanation
Indices: 69964041--69964092 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
69964031 CAATTAATTT
* *
69964041 TTTATATTTGATTCGATCTGATTAA
1 TTTATATTTGATTCGATCTAAATAA
*
69964066 TTTA-ATTTGAATTCGATTTAAATAA
1 TTTATATTTG-ATTCGATCTAAATAA
69964091 TT
1 TT
69964093 AAAAAATATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.33, C:0.06, G:0.10, T:0.52
Consensus pattern (25 bp):
TTTATATTTGATTCGATCTAAATAA
Found at i:69964171 original size:15 final size:15
Alignment explanation
Indices: 69964125--69964173 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
69964115 ATTTAATTAT
69964125 AAAAATTAATATGAA
1 AAAAATTAATATGAA
* * *
69964140 AAATATCGAAAAT-AA
1 AAAAAT-TAATATGAA
69964155 AAAAATTAATATGAA
1 AAAAATTAATATGAA
69964170 AAAA
1 AAAA
69964174 CTGAAAACTG
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
14 4 0.15
15 18 0.69
16 4 0.15
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.22
Consensus pattern (15 bp):
AAAAATTAATATGAA
Found at i:69965972 original size:21 final size:21
Alignment explanation
Indices: 69965948--69965987 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
69965938 ATTTTTTCTA
*
69965948 AAGTTAAAAGTTAAAACTATT
1 AAGTTAAAAGGTAAAACTATT
69965969 AAGTTAAAAGGTAAAACTA
1 AAGTTAAAAGGTAAAACTA
69965988 CGTCGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.55, C:0.05, G:0.12, T:0.28
Consensus pattern (21 bp):
AAGTTAAAAGGTAAAACTATT
Found at i:69967160 original size:18 final size:18
Alignment explanation
Indices: 69967125--69967160 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
69967115 GTTTATAATA
*
69967125 TTATATATTATGTTATTT
1 TTATATATTATGTAATTT
*
69967143 TTATATATTTTGTAATTT
1 TTATATATTATGTAATTT
69967161 AGAACACGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.67
Consensus pattern (18 bp):
TTATATATTATGTAATTT
Found at i:69969528 original size:3 final size:3
Alignment explanation
Indices: 69969514--69969548 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
69969504 TCCTTTATCG
* *
69969514 TCA TCG TCA TCA TCA TCA TCA TCA ACA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
69969549 TTTTTGTTGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.31, C:0.34, G:0.03, T:0.31
Consensus pattern (3 bp):
TCA
Found at i:69974115 original size:13 final size:13
Alignment explanation
Indices: 69974082--69974115 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
69974072 AATTAAACTG
*
69974082 ATTAATACAACAA
1 ATTAATATAACAA
69974095 ATTAATATAACAA
1 ATTAATATAACAA
69974108 ATTAATAT
1 ATTAATAT
69974116 CTCGAACTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.32
Consensus pattern (13 bp):
ATTAATATAACAA
Found at i:69975347 original size:40 final size:39
Alignment explanation
Indices: 69975303--69975417 Score: 133
Period size: 40 Copynumber: 2.9 Consensus size: 39
69975293 GTTTGGATAA
* *
69975303 AAAACGCCGCTAAAAATTAAGCATTATCGGCGCTTTTAAG
1 AAAACGCCACTAAAAA-TAAGCATTAACGGCGCTTTTAAG
* * * *
69975343 AAAACGCCACTAAAGATAGAGTATTAACGGCGCTTTCAGG
1 AAAACGCCACTAAAAATA-AGCATTAACGGCGCTTTTAAG
* *
69975383 AAAACGCCACTAAAAATGAGCATTAGCGGCG-TTTT
1 AAAACGCCACTAAAAATAAGCATTAACGGCGCTTTT
69975418 CCAAAAACGC
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
38 3 0.05
39 13 0.21
40 47 0.75
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (39 bp):
AAAACGCCACTAAAAATAAGCATTAACGGCGCTTTTAAG
Found at i:69975665 original size:41 final size:41
Alignment explanation
Indices: 69975468--69975666 Score: 272
Period size: 41 Copynumber: 4.9 Consensus size: 41
69975458 TTTTGAGTTT
* * * * *
69975468 TCGGGGCTTTAGTGGCATTTTTAAGGAAGCGCCACTAATGC
1 TCGGGCCTTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGC
* *
69975509 TCGGGTCTTTAGCGGCGTATTTAAAGAAGCGCCGCTAATGC
1 TCGGGCCTTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGC
* * * *
69975550 TCGGGTCTTTAGCGGCGTTTTTAAATAGGCGCCACTAATGC
1 TCGGGCCTTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGC
69975591 TCGGGCCTTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGC
1 TCGGGCCTTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGC
* * *
69975632 TCGAGCCTTTAGCGGCGTTTTTGAAGAATCGCCGC
1 TCGGGCCTTTAGCGGCGTTTTTAAAGAAGCGCCGC
69975667 AAAAAATATT
Statistics
Matches: 141, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 141 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (41 bp):
TCGGGCCTTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGC
Found at i:69981237 original size:43 final size:43
Alignment explanation
Indices: 69981170--69981311 Score: 187
Period size: 43 Copynumber: 3.3 Consensus size: 43
69981160 AGATTATGTT
* * *
69981170 TTTAGCGGCGTTTTTGTTAGAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCTTGGTC
* * *
69981213 TATAGCGGCGTTTGTGATAAAAGCGCCTCTAAAGGTCTTAGTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCTTGGTC
* **
69981256 TTTAGCGGCGTTTGT-AGGAAAAGCGTTGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGA-TAAAAGCGCCGCTAAAGGTCTTGGTC
69981299 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
69981312 TTCTGGTGCT
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 1 0.01
43 85 0.99
ACGTcount: A:0.20, C:0.17, G:0.30, T:0.34
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCTTGGTC
Found at i:69983086 original size:16 final size:16
Alignment explanation
Indices: 69983065--69983098 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
69983055 TTCCTTACTT
*
69983065 TTATTTCCTTTATTTA
1 TTATTTCATTTATTTA
*
69983081 TTATTTTATTTATTTA
1 TTATTTCATTTATTTA
69983097 TT
1 TT
69983099 TTTTGCTGCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.74
Consensus pattern (16 bp):
TTATTTCATTTATTTA
Found at i:69990438 original size:90 final size:88
Alignment explanation
Indices: 69990297--69990461 Score: 267
Period size: 90 Copynumber: 1.9 Consensus size: 88
69990287 TCCTCCAAAG
* *
69990297 AAACTATCATTGAAACAAACCCCCAAAGGCAATTTGTTAAAAACCGGTATTTAACGCTCACACTC
1 AAACTATCATTGAAACAAACCCCAAAAGGCAATTCGTTAAAAACCGGTATTTAACGCTCACACTC
69990362 GAATCCAAATGAATCCCCCAGAC
66 GAATCCAAATGAATCCCCCAGAC
* * *
69990385 AAACTATCATTTAAACAAAACCCGAAAGAGGCAATTCGTTAAATACCGGTATTTAACGCTCACAC
1 AAACTATCATTGAAAC-AAACCCCAAA-AGGCAATTCGTTAAAAACCGGTATTTAACGCTCACAC
69990450 TCGAATCCAAAT
64 TCGAATCCAAAT
69990462 AACCTAGTTA
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
88 15 0.21
89 8 0.11
90 47 0.67
ACGTcount: A:0.41, C:0.26, G:0.12, T:0.22
Consensus pattern (88 bp):
AAACTATCATTGAAACAAACCCCAAAAGGCAATTCGTTAAAAACCGGTATTTAACGCTCACACTC
GAATCCAAATGAATCCCCCAGAC
Found at i:69992191 original size:7 final size:7
Alignment explanation
Indices: 69992179--69992203 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
69992169 TTTTATTTTA
69992179 TTTTATT
1 TTTTATT
69992186 TTTTATT
1 TTTTATT
69992193 TTTTATT
1 TTTTATT
69992200 TTTT
1 TTTT
69992204 TGGGAGGGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTATT
Found at i:70010275 original size:10 final size:10
Alignment explanation
Indices: 70010260--70010290 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
70010250 CATAAGCTCG
70010260 AGCCCGGCCC
1 AGCCCGGCCC
70010270 AGCCCGGCCC
1 AGCCCGGCCC
*
70010280 AACCCGGCCC
1 AGCCCGGCCC
70010290 A
1 A
70010291 TTTTTAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.16, C:0.58, G:0.26, T:0.00
Consensus pattern (10 bp):
AGCCCGGCCC
Found at i:70010360 original size:30 final size:32
Alignment explanation
Indices: 70010307--70010369 Score: 87
Period size: 31 Copynumber: 2.0 Consensus size: 32
70010297 ATAAACATTA
70010307 AAAAATTATTTTAAAAATAAAAAAAC-AAAAAT
1 AAAAATTATTTTAAAAAT-AAAAAACTAAAAAT
*
70010339 AAAAA-TATTTTAAAACT-AAAAACTAAAAAT
1 AAAAATTATTTTAAAAATAAAAAACTAAAAAT
70010369 A
1 A
70010370 TATTTATTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 6 0.21
30 7 0.24
31 11 0.38
32 5 0.17
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (32 bp):
AAAAATTATTTTAAAAATAAAAAACTAAAAAT
Found at i:70012369 original size:19 final size:20
Alignment explanation
Indices: 70012331--70012369 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
70012321 GGTCAGAGTG
* *
70012331 CAATTTTAACATTATTAATT
1 CAATTATAACATTATAAATT
70012351 CAATTATAA-ATTATAAATT
1 CAATTATAACATTATAAATT
70012370 ATAATTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (20 bp):
CAATTATAACATTATAAATT
Found at i:70012446 original size:91 final size:91
Alignment explanation
Indices: 70012283--70012459 Score: 264
Period size: 91 Copynumber: 1.9 Consensus size: 91
70012273 ATCTTTATTG
* * * * *
70012283 TTTTTAAAAGATTGAATCAAAATTTTATCATTTTTGGAGGTCAGAGTGCAATTTTAACATTATTA
1 TTTTTAAAAGATTAAATCAAAATTTTATAATTTTTAGAGGTCACAGTGCAATTTTAACATTACTA
*
70012348 ATTCAATTATAAATTATAAATTATAA
66 ATCCAATTATAAATTATAAATTATAA
* ** *
70012374 TTTTTAAAAGATTAAATTAATTTTTTATAATTTTTAGAGGTCACAGTGCAATTTTACCATTACTA
1 TTTTTAAAAGATTAAATCAAAATTTTATAATTTTTAGAGGTCACAGTGCAATTTTAACATTACTA
70012439 ATCCAATTATAAATTATAAAT
66 ATCCAATTATAAATTATAAAT
70012460 CAACATAAAT
Statistics
Matches: 76, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
91 76 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (91 bp):
TTTTTAAAAGATTAAATCAAAATTTTATAATTTTTAGAGGTCACAGTGCAATTTTAACATTACTA
ATCCAATTATAAATTATAAATTATAA
Found at i:70014636 original size:22 final size:22
Alignment explanation
Indices: 70014610--70014651 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
70014600 CTATTACATG
*
70014610 TTTT-GATTGTGTTTTTTTGTCT
1 TTTTGGATTGT-TCTTTTTGTCT
70014632 TTTTGGATTGTTCTTTTTGT
1 TTTTGGATTGTTCTTTTTGT
70014652 TAGGATAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.05, C:0.05, G:0.19, T:0.71
Consensus pattern (22 bp):
TTTTGGATTGTTCTTTTTGTCT
Found at i:70020178 original size:13 final size:14
Alignment explanation
Indices: 70020160--70020188 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
70020150 ATTTTTATTG
70020160 TTGTATTATTT-TT
1 TTGTATTATTTGTT
70020173 TTGTATTATTTGTT
1 TTGTATTATTTGTT
70020187 TT
1 TT
70020189 TGTTGAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.14, C:0.00, G:0.10, T:0.76
Consensus pattern (14 bp):
TTGTATTATTTGTT
Found at i:70031493 original size:23 final size:25
Alignment explanation
Indices: 70031456--70031506 Score: 70
Period size: 23 Copynumber: 2.1 Consensus size: 25
70031446 TTATTTGTGC
*
70031456 ATTATAATAGTTAATTGTTATCATA
1 ATTATAATAGTTAATTGTAATCATA
*
70031481 ATTAT-AT-GTTAATTGTAATTATA
1 ATTATAATAGTTAATTGTAATCATA
70031504 ATT
1 ATT
70031507 TTAGTTTATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 17 0.71
24 2 0.08
25 5 0.21
ACGTcount: A:0.39, C:0.02, G:0.08, T:0.51
Consensus pattern (25 bp):
ATTATAATAGTTAATTGTAATCATA
Found at i:70037173 original size:291 final size:294
Alignment explanation
Indices: 70036513--70037188 Score: 936
Period size: 300 Copynumber: 2.3 Consensus size: 294
70036503 GAGTGTTCAG
* **
70036513 TTTGAATGTTAAAAATGGAACAGTTAGGTATTGTTTGGTAAATGATAAGCGATTCTCAATGCGTT
1 TTTGAATGTTAAAAATGGAACAGTTAGGTGTTGTTTGGTAAATGATAAGTAATTCTCAATGCGTT
* * *
70036578 TGGTTTCTCATTTTGGAGATTAAGCTTGATTGATTGTTTTCAATAATATATACTACTTATGAGTT
66 TGGTTTCTCATTCTGGAGATTAAGCTTGAATGATTATTTTCAATAATATATACTACTTATGAGTT
*
70036643 AAAGCAATGCTATTTTTTTCCCATCATTTGACCACTATGAGTTCAGTTCCTGTTTGGTTACCGAG
131 AAAGCAATGCTATTTTTTT-CCATCATTTGACCACTATGAGTTCACTTCCTGTTTGGTTACCGAG
* *
70036708 AAAGTGAAGGAACATGGAAAGTTGAAACATTGTTTCACTGTGCAAAAGAACCTGGTTTTGTCATC
195 AAAGTGAAGGAAAATGGAAAGTTGAAACATTGTTTCACTGTGCAAAAGAACCTGCTTTTGTCATC
*
70036773 TGAGTGTTCAGTAAAGGGTAGTATTTTTATTTCCATTGTT
260 TGA----TCA-TAAAGGGTAGTATTTTTATTTCCATTGGT
* * *
70036813 TTTGAATGTTAAAAATGGAACAGTTAGGTGTTGTTTGGTGAACGATAAGTAACTCTCAATGCGTT
1 TTTGAATGTTAAAAATGGAACAGTTAGGTGTTGTTTGGTAAATGATAAGTAATTCTCAATGCGTT
* *
70036878 TGGTTTCTTATTCTGGAGATTAAGCTT-AATGAATTATTTTCAATAATATATACTACTTAATGTG
66 TGGTTTCTCATTCTGGAGATTAAGCTTGAATG-ATTATTTTCAATAATATATACTACTT-ATGAG
** **
70036942 TTACGGCAATG-T-TTTCTTTT-CATCATTTGACTGCTATGAGTTCACTTCCTGTTTGGTTACCG
129 TTAAAGCAATGCTATTT-TTTTCCATCATTTGACCACTATGAGTTCACTTCCTGTTTGGTTACCG
* * * * *
70037004 AGAAAGTGAAGGAAAATGGAAAGTTGAAATGATTGTTTTACTGTTCACAAGAACCTGCTTTTGTT
193 AGAAAGTGAAGGAAAATGGAAAGTTGAAA-CATTGTTTCACTGTGCAAAAGAACCTGCTTTTGTC
* * *
70037069 ATCTGA-C-TTAAGGTTAGTA-TTTTATTTTCATTGGT
257 ATCTGATCATAAAGGGTAGTATTTTTATTTCCATTGGT
* *
70037104 TTTGAATGTTAAAAATGGAACGGTTAGGTGTTGTTTGGTAAATGATAAGTAATTCTCAATGCATT
1 TTTGAATGTTAAAAATGGAACAGTTAGGTGTTGTTTGGTAAATGATAAGTAATTCTCAATGCGTT
70037169 TGGTTTCTCAATT-TGGAGAT
66 TGGTTTCTC-ATTCTGGAGAT
70037189 AAGTTTTATT
Statistics
Matches: 338, Mismatches: 33, Indels: 19
0.87 0.08 0.05
Matches are distributed among these distances:
291 89 0.26
292 13 0.04
294 1 0.00
298 67 0.20
299 41 0.12
300 114 0.34
301 13 0.04
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.40
Consensus pattern (294 bp):
TTTGAATGTTAAAAATGGAACAGTTAGGTGTTGTTTGGTAAATGATAAGTAATTCTCAATGCGTT
TGGTTTCTCATTCTGGAGATTAAGCTTGAATGATTATTTTCAATAATATATACTACTTATGAGTT
AAAGCAATGCTATTTTTTTCCATCATTTGACCACTATGAGTTCACTTCCTGTTTGGTTACCGAGA
AAGTGAAGGAAAATGGAAAGTTGAAACATTGTTTCACTGTGCAAAAGAACCTGCTTTTGTCATCT
GATCATAAAGGGTAGTATTTTTATTTCCATTGGT
Found at i:70037937 original size:159 final size:158
Alignment explanation
Indices: 70037583--70037902 Score: 394
Period size: 159 Copynumber: 2.0 Consensus size: 158
70037573 TTTTTACTGC
* * * ***
70037583 AATGAGTTCACTTCCTGTTTTGTTACCAAGAAAGTAAAGGAAAATTGGAGGAAAAGGGAAAGTTG
1 AATGAGATCACTTCCTGTTTGGTGAATGAGAAAGTAAAGGAAAATTGGAGGAAAAGGGAAAGTTG
*
70037648 AAACGATCATTTCACTGTGCAAAAGAACCTGGTTTTGTCATCCGAGTGTTCACTAAAGGGTAGTA
66 AAACGATCATTTCACTGTGCAAAAGAACCTGCTTTTGTCATCCGAG-GTTCACTAAAGGGTAGTA
** *
70037713 TCATGTTTTCTTTGGTTTTAAATGTTACA
130 TCATGTTTTCAGTGGTTTTAAATGTTAAA
* * * *
70037742 AATGAGTTCACTTCCTGTTTGGTTACTGAGAAAGTAAAGGAAAATTGGAGGAAAATGGAAAGTTG
1 AATGAGATCACTTCCTGTTTGGTGAATGAGAAAGTAAAGGAAAATTGGAGGAAAAGGGAAAGTTG
* ** *
70037807 AAATGATTGTTTCACTGTG-AAAATGAACCTGCTTTTGTCATCTGA-GTTCAGC-AAAGGGTAGT
66 AAACGATCATTTCACTGTGCAAAA-GAACCTGCTTTTGTCATCCGAGGTTCA-CTAAAGGGTAGT
* ** *
70037869 GTTTTGTTTTCAGTGGTTTTGAATGTTAAA
129 ATCATGTTTTCAGTGGTTTTAAATGTTAAA
70037899 AATG
1 AATG
70037903 GAATAGTTAG
Statistics
Matches: 143, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
157 42 0.29
158 5 0.03
159 96 0.67
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (158 bp):
AATGAGATCACTTCCTGTTTGGTGAATGAGAAAGTAAAGGAAAATTGGAGGAAAAGGGAAAGTTG
AAACGATCATTTCACTGTGCAAAAGAACCTGCTTTTGTCATCCGAGGTTCACTAAAGGGTAGTAT
CATGTTTTCAGTGGTTTTAAATGTTAAA
Found at i:70041790 original size:14 final size:14
Alignment explanation
Indices: 70041773--70041822 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 14
70041763 ATTTCTTTAT
70041773 ATTTTAATAGTTAA
1 ATTTTAATAGTTAA
* * *
70041787 ATTTGAATAATCAA
1 ATTTTAATAGTTAA
* *
70041801 ATTTTAATTGTTTA
1 ATTTTAATAGTTAA
70041815 ATTTTAAT
1 ATTTTAAT
70041823 TTGTCAAGTT
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.52
Consensus pattern (14 bp):
ATTTTAATAGTTAA
Found at i:70048646 original size:5 final size:5
Alignment explanation
Indices: 70048636--70048661 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
70048626 AAAAAGGGGT
70048636 AATTA AATTA AATTA AATTA AATTA A
1 AATTA AATTA AATTA AATTA AATTA A
70048662 TATTTATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
AATTA
Found at i:70050067 original size:9 final size:9
Alignment explanation
Indices: 70050038--70050131 Score: 136
Period size: 9 Copynumber: 10.4 Consensus size: 9
70050028 AAATAAAAAA
70050038 AATTCGGGT
1 AATTCGGGT
*
70050047 ATTTTC-GGT
1 A-ATTCGGGT
*
70050056 AATTCGGTT
1 AATTCGGGT
*
70050065 AATTCGGTT
1 AATTCGGGT
*
70050074 AATTCGGTT
1 AATTCGGGT
70050083 AATTCGGGT
1 AATTCGGGT
70050092 AATTCGGGT
1 AATTCGGGT
70050101 AATTCGGGT
1 AATTCGGGT
70050110 AATTCGGGT
1 AATTCGGGT
70050119 AATTCGGGT
1 AATTCGGGT
70050128 AATT
1 AATT
70050132 TTTAACCAAA
Statistics
Matches: 79, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
8 3 0.04
9 73 0.92
10 3 0.04
ACGTcount: A:0.22, C:0.11, G:0.28, T:0.39
Consensus pattern (9 bp):
AATTCGGGT
Found at i:70050309 original size:12 final size:12
Alignment explanation
Indices: 70050292--70050316 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70050282 AGTAATTTCG
70050292 GGTCGGTTAACC
1 GGTCGGTTAACC
70050304 GGTCGGTTAACC
1 GGTCGGTTAACC
70050316 G
1 G
70050317 AATGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:70061084 original size:239 final size:239
Alignment explanation
Indices: 70060665--70061418 Score: 818
Period size: 239 Copynumber: 3.1 Consensus size: 239
70060655 AAAAGTACAT
*
70060665 GAACCTTTCAGTCAACATATACCATTCTTTCTACATATGACAAGTTGACAACGAAACAATATATT
1 GAACCTTTCAGTCAACATATACCATTCTTTCCACATATGACAAGTTGACAACGAAACAATATATT
* * * *
70060730 AACTCCCAGACTC-ATCCCCTTCCTATACTTATAACGAACATAAAAAGCCACGAATTCTGC-TT-
66 AACTCCCAGACTCGA-CCCCTTCCTATACTTATAACTAACATAAAAAG-AACAAATTCTCCTTTG
*
70060792 CACTCATCTTAGAATTGCAAACTCGAAGTGCACTCAGAGACAGGCAATTATTGAATAT-AATACA
129 C-CT-ATCTTAGAATGGCAAACTCGAAGTGCACTCAGAGACAGGCAATTATTGAATATAAATACA
70060856 ACCTTAACACCTACAAAGGAGAATAA-TAACGGTTCTATATCACGATGC
192 ACCTTAACACCTACAAAGGAGAA-AAGTAACGGTTCTATATCACGATGC
* *
70060904 GAACCTTTCAGCCAACATATACGATTCTTTCCACATATGACAAGTTGACAACGAAACAATATATT
1 GAACCTTTCAGTCAACATATACCATTCTTTCCACATATGACAAGTTGACAACGAAACAATATATT
* * *
70060969 AACTTCCACACTCGACTCCTTCCTATACTTATAACTAACATAAAAAGTAACAAATTCTCCTTTGC
66 AACTCCCAGACTCGACCCCTTCCTATACTTATAACTAACATAAAAAG-AACAAATTCTCCTTTGC
* * * *
70061034 CTATCTCAAAATGGCAAGCTCGAAGTGCACTCAGAGA-TGAGCAATTATTGAATATAATCATACA
130 CTATCTTAGAATGGCAAACTCGAAGTGCACTCAGAGACAG-GCAATTATTGAATATAA--ATACA
* * * * * * *
70061098 ACCTTAACACCGACAAAGGGCAAAAAAAAGGAACGGCTCTATAACATGATGA
192 ACCTTAACACCTACAAA-GG---AGAAAAGTAACGGTTCTATATCACGATGC
** ** * * *
70061150 GAACCTTTTGGTCAAC--AT---A--CTTTCCACACGTGACAAGCTGATAACGAAACAATACATT
1 GAACCTTTCAGTCAACATATACCATTCTTTCCACATATGACAAGTTGACAACGAAACAATATATT
* * * *
70061208 AACTCCCAGACTTGTCCCCCTCCTATACTTATAA-TGAACATAAAAA-ACCCATGAATTCTCCTT
66 AACTCCCAGACTCGACCCCTTCCTATACTTATAACT-AACATAAAAAGA-ACA--AATTCTCCTT
* * * * **
70061271 CGCCCATCTTAGAATGGCAAACTCGAAGTGCACTCAGAGACAGGTAACTATTGAACATATCCATA
127 TGCCTATCTTAGAATGGCAAACTCGAAGTGCACTCAGAGACAGGCAATTATTG-A-ATATAAATA
* * *
70061336 CAACCTTAACACCTACAGAGGAGAAAATTAATGGTTCTATATCACGATGC
190 CAACCTTAACACCTACAAAGGAGAAAAGTAACGGTTCTATATCACGATGC
* * *
70061386 AAATCTTTCAGTCAATATAATACCATTCTTTCC
1 GAACCTTTCAGTCAACAT-ATACCATTCTTTCC
70061419 TTGGATGACA
Statistics
Matches: 425, Mismatches: 63, Indels: 49
0.79 0.12 0.09
Matches are distributed among these distances:
236 32 0.08
237 1 0.00
238 4 0.01
239 234 0.55
240 79 0.19
241 4 0.01
242 26 0.06
243 2 0.00
244 8 0.02
245 2 0.00
246 33 0.08
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.26
Consensus pattern (239 bp):
GAACCTTTCAGTCAACATATACCATTCTTTCCACATATGACAAGTTGACAACGAAACAATATATT
AACTCCCAGACTCGACCCCTTCCTATACTTATAACTAACATAAAAAGAACAAATTCTCCTTTGCC
TATCTTAGAATGGCAAACTCGAAGTGCACTCAGAGACAGGCAATTATTGAATATAAATACAACCT
TAACACCTACAAAGGAGAAAAGTAACGGTTCTATATCACGATGC
Found at i:70062096 original size:5 final size:5
Alignment explanation
Indices: 70062086--70062110 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
70062076 ACTGTAAATC
70062086 ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA
70062111 CTAACCTTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:70062748 original size:31 final size:33
Alignment explanation
Indices: 70062695--70062757 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 33
70062685 AACAAGTTTG
** *
70062695 AAAATAGAAATAAAAATTTGTTT-TTAATTATA
1 AAAATAGAAATAAAAACATGTTTGGTAATTATA
*
70062727 AAAATATAAA-AAAAACATGTTTGGTAATTAT
1 AAAATAGAAATAAAAACATGTTTGGTAATTAT
70062758 TCTTTTATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
31 10 0.38
32 16 0.62
ACGTcount: A:0.54, C:0.02, G:0.08, T:0.37
Consensus pattern (33 bp):
AAAATAGAAATAAAAACATGTTTGGTAATTATA
Found at i:70063386 original size:37 final size:37
Alignment explanation
Indices: 70063340--70063413 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
70063330 CACTAACAAT
70063340 GTTAATTTTTTACGAGGGGGA-AACAAATAGCTAATTG
1 GTTAATTTTTTACGA-GGGGACAACAAATAGCTAATTG
*
70063377 GTTAGTTTTTTACGAGGGGACAACAAATAGCTAATTG
1 GTTAATTTTTTACGAGGGGACAACAAATAGCTAATTG
70063414 ATGACCAAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 5 0.14
37 30 0.86
ACGTcount: A:0.34, C:0.09, G:0.24, T:0.32
Consensus pattern (37 bp):
GTTAATTTTTTACGAGGGGACAACAAATAGCTAATTG
Found at i:70076683 original size:3 final size:3
Alignment explanation
Indices: 70076672--70076735 Score: 85
Period size: 3 Copynumber: 21.3 Consensus size: 3
70076662 CAATAATACC
* * *
70076672 AAT ACT AAT AAT AGT AA- AGAT GAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
70076717 AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT A
70076736 GCAAAAGTAC
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
2 1 0.02
3 52 0.98
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:70077964 original size:14 final size:14
Alignment explanation
Indices: 70077945--70077972 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
70077935 TCATCCTCGC
70077945 ATTTTAAAATATTT
1 ATTTTAAAATATTT
70077959 ATTTTAAAATATTT
1 ATTTTAAAATATTT
70077973 CATAAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
ATTTTAAAATATTT
Found at i:70079371 original size:30 final size:30
Alignment explanation
Indices: 70079330--70079424 Score: 113
Period size: 30 Copynumber: 3.1 Consensus size: 30
70079320 AAGTAAAACA
70079330 AAAATTTAAAAAAATATTTTAAAAATATTTT
1 AAAA-TTAAAAAAATATTTTAAAAATATTTT
* * *
70079361 AAAATTAAAAAAGTATTTTAAAAAAATTTA
1 AAAATTAAAAAAATATTTTAAAAATATTTT
*
70079391 AAAATT-TAAAAAT-TTTTAAAAAAGTATTTT
1 AAAATTAAAAAAATATTTT-AAAAA-TATTTT
70079421 AAAA
1 AAAA
70079425 GCATTCTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
28 4 0.07
29 10 0.18
30 37 0.67
31 4 0.07
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (30 bp):
AAAATTAAAAAAATATTTTAAAAATATTTT
Found at i:70079425 original size:11 final size:10
Alignment explanation
Indices: 70079340--70079411 Score: 53
Period size: 9 Copynumber: 7.4 Consensus size: 10
70079330 AAAATTTAAA
70079340 AAAATATTTT
1 AAAATATTTT
70079350 AAAAATATTTT
1 -AAAATATTTT
**
70079361 -AAA-ATTAA
1 AAAATATTTT
70079369 AAAAGTATTTT
1 AAAA-TATTTT
* *
70079380 AAAAAAATTT
1 AAAATATTTT
*
70079390 AAAA-ATTTA
1 AAAATATTTT
70079399 AAAAT-TTTT
1 AAAATATTTT
70079408 AAAA
1 AAAA
70079412 AAGTATTTTA
Statistics
Matches: 48, Mismatches: 9, Indels: 10
0.72 0.13 0.15
Matches are distributed among these distances:
8 3 0.06
9 20 0.42
10 8 0.17
11 17 0.35
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (10 bp):
AAAATATTTT
Found at i:70079452 original size:40 final size:40
Alignment explanation
Indices: 70079361--70079452 Score: 116
Period size: 41 Copynumber: 2.3 Consensus size: 40
70079351 AAAATATTTT
70079361 AAAATTAAAAAAGTATTTTAAAAAAATTTAAAAATTTAAA
1 AAAATTAAAAAAGTATTTTAAAAAAATTTAAAAATTTAAA
** **
70079401 AATTTTTAAAAAAGTATTTTAAAAGCATTCT-AAAA-TTAAA
1 AA-AATTAAAAAAGTATTTTAAAAAAATT-TAAAAATTTAAA
70079441 AAAATTAAAAAA
1 AAAATTAAAAAA
70079453 TAAAAATAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
39 8 0.18
40 9 0.20
41 26 0.59
42 1 0.02
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (40 bp):
AAAATTAAAAAAGTATTTTAAAAAAATTTAAAAATTTAAA
Found at i:70081952 original size:20 final size:19
Alignment explanation
Indices: 70081919--70081956 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
70081909 AAAAATAACA
70081919 AAAAATAAAAATATTAAAT
1 AAAAATAAAAATATTAAAT
*
70081938 AAAAATAACATATATTAAA
1 AAAAATAA-AAATATTAAA
70081957 AAATAATATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (19 bp):
AAAAATAAAAATATTAAAT
Found at i:70082811 original size:28 final size:29
Alignment explanation
Indices: 70082757--70082811 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
70082747 ATGGGAGTAA
* *
70082757 TTTTATTTTAGTTATTTATGTTTTTTTGT
1 TTTTATTTTAGTTATTTATCTTATTTTGT
*
70082786 TTTTA-TTTATTTATTTATCTTATTTT
1 TTTTATTTTAGTTATTTATCTTATTTT
70082812 AGTTAGTGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 18 0.78
29 5 0.22
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.76
Consensus pattern (29 bp):
TTTTATTTTAGTTATTTATCTTATTTTGT
Found at i:70085862 original size:18 final size:18
Alignment explanation
Indices: 70085841--70085875 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
70085831 AATAAATAAT
*
70085841 AATTTTAATACATTTTAC
1 AATTTTAATAAATTTTAC
70085859 AATTTTAATAAATTTTA
1 AATTTTAATAAATTTTA
70085876 ATTGTTGATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (18 bp):
AATTTTAATAAATTTTAC
Found at i:70086623 original size:30 final size:29
Alignment explanation
Indices: 70086587--70086651 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
70086577 ATGGTATTTT
* *
70086587 TAAAATTTGGTACGTTTAGAAAGAGATAAA
1 TAAAATTTGATACGATTAGAAA-AGATAAA
* *
70086617 TAAAATTTGATTCGATTATAAAAGATAAA
1 TAAAATTTGATACGATTAGAAAAGATAAA
*
70086646 AAAAAT
1 TAAAAT
70086652 GAATTTTGAG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 12 0.40
30 18 0.60
ACGTcount: A:0.52, C:0.03, G:0.14, T:0.31
Consensus pattern (29 bp):
TAAAATTTGATACGATTAGAAAAGATAAA
Found at i:70088546 original size:17 final size:18
Alignment explanation
Indices: 70088517--70088563 Score: 62
Period size: 17 Copynumber: 2.6 Consensus size: 18
70088507 AATTATTAAA
70088517 AAAATTCAAAATAATTT-T
1 AAAATTCAAAAT-ATTTAT
70088535 AAAATT-AAAATATTTAT
1 AAAATTCAAAATATTTAT
70088552 AAAATTCCAAAA
1 AAAATT-CAAAA
70088564 ATTATAACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
16 4 0.15
17 12 0.46
18 6 0.23
19 4 0.15
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (18 bp):
AAAATTCAAAATATTTAT
Found at i:70096880 original size:14 final size:14
Alignment explanation
Indices: 70096861--70096888 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
70096851 TAATTAACTC
70096861 CAAAAATATAAACA
1 CAAAAATATAAACA
70096875 CAAAAATATAAACA
1 CAAAAATATAAACA
70096889 ATGAAACATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.14, G:0.00, T:0.14
Consensus pattern (14 bp):
CAAAAATATAAACA
Found at i:70100249 original size:28 final size:28
Alignment explanation
Indices: 70100194--70100252 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 28
70100184 AATATTAAAA
*
70100194 TATTTTTAAAATATATTTTTTAATTTTT
1 TATTTTTAAAATATAATTTTTAATTTTT
* *
70100222 TATTTTTAAAATA-AATTTTTAGTGTTT
1 TATTTTTAAAATATAATTTTTAATTTTT
70100249 TATT
1 TATT
70100253 AAAAAATGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 15 0.54
28 13 0.46
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.64
Consensus pattern (28 bp):
TATTTTTAAAATATAATTTTTAATTTTT
Found at i:70100744 original size:29 final size:29
Alignment explanation
Indices: 70100711--70100766 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
70100701 AAAAGCCAAT
70100711 TTTTTTAAAAAATTACCGAAATGGGCCGG
1 TTTTTTAAAAAATTACCGAAATGGGCCGG
** * *
70100740 TTTTTTAATTATTTACCGGAATGGGCC
1 TTTTTTAAAAAATTACCGAAATGGGCC
70100767 ATTTTCCCCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.38
Consensus pattern (29 bp):
TTTTTTAAAAAATTACCGAAATGGGCCGG
Found at i:70101006 original size:22 final size:22
Alignment explanation
Indices: 70100981--70101050 Score: 113
Period size: 22 Copynumber: 3.2 Consensus size: 22
70100971 AAATTCAATA
70100981 TCAATTTCCTTCAAAAATTCTC
1 TCAATTTCCTTCAAAAATTCTC
*
70101003 TCAATTCCCTTCAAAAATTCTC
1 TCAATTTCCTTCAAAAATTCTC
* *
70101025 TCAAATTCCTTCCAAAATTCTC
1 TCAATTTCCTTCAAAAATTCTC
70101047 TCAA
1 TCAA
70101051 ACTCTCAAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 44 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.37
Consensus pattern (22 bp):
TCAATTTCCTTCAAAAATTCTC
Found at i:70101057 original size:30 final size:30
Alignment explanation
Indices: 70101022--70101080 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
70101012 TTCAAAAATT
*
70101022 CTCTCAAATTCCTTCCAAAATTCTCTCAAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAAA
70101052 CTCTCAAATTCCTTCCAAAATCCTCTCAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAA
70101081 TTTCCTTCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (30 bp):
CTCTCAAATTCCTTCCAAAATCCTCTCAAA
Found at i:70101066 original size:52 final size:51
Alignment explanation
Indices: 70101000--70101102 Score: 136
Period size: 52 Copynumber: 2.0 Consensus size: 51
70100990 TTCAAAAATT
* * *
70101000 CTCTCAATTCCCTTCAAAAATTCTCTCAAATTCCTTCCAAAATTCTCTCAAA
1 CTCTCAATTCCCTTCAAAAATCCTCTCAAATTCCTTCAAAAAATCTC-CAAA
* *
70101052 CTCTCAAATT-CCTTCCAAAATCCTCTCAATTTCCTTCAAAAAATCTCCAAA
1 CTCTC-AATTCCCTTCAAAAATCCTCTCAAATTCCTTCAAAAAATCTCCAAA
70101103 TCCATATTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
51 4 0.09
52 37 0.82
53 4 0.09
ACGTcount: A:0.34, C:0.33, G:0.00, T:0.33
Consensus pattern (51 bp):
CTCTCAATTCCCTTCAAAAATCCTCTCAAATTCCTTCAAAAAATCTCCAAA
Found at i:70101091 original size:21 final size:22
Alignment explanation
Indices: 70101052--70101093 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
70101042 TTCTCTCAAA
70101052 CTCTCAAATTCCTTCCAAAATC
1 CTCTCAAATTCCTTCCAAAATC
* *
70101074 CTCTCAATTTCCTTCAAAAA
1 CTCTCAAATTCCTTCCAAAA
70101094 ATCTCCAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (22 bp):
CTCTCAAATTCCTTCCAAAATC
Found at i:70101197 original size:28 final size:29
Alignment explanation
Indices: 70101136--70101197 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
70101126 TAAATTTCAT
**
70101136 TTTTTTAAGAAAATTTTAAATTTTTTTTA
1 TTTTTTAAGAAAATTTTAAATTTTTAATA
*
70101165 TTTTTTAA-ATAATTTTAAAATTTTTAATA
1 TTTTTTAAGAAAATTTT-AAATTTTTAATA
70101194 TTTT
1 TTTT
70101198 CAACAATGGC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 7 0.24
29 22 0.76
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (29 bp):
TTTTTTAAGAAAATTTTAAATTTTTAATA
Found at i:70101576 original size:29 final size:29
Alignment explanation
Indices: 70101543--70101598 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
70101533 AAAAGCCAAT
70101543 TTTTTTAAAAAATTACCGAAATGGGCCGG
1 TTTTTTAAAAAATTACCGAAATGGGCCGG
** * *
70101572 TTTTTTAATTATTTACCGGAATGGGCC
1 TTTTTTAAAAAATTACCGAAATGGGCC
70101599 ATTTTCCCCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.38
Consensus pattern (29 bp):
TTTTTTAAAAAATTACCGAAATGGGCCGG
Found at i:70101837 original size:22 final size:22
Alignment explanation
Indices: 70101812--70101881 Score: 113
Period size: 22 Copynumber: 3.2 Consensus size: 22
70101802 AAATTCAATA
70101812 TCAATTTCCTTCAAAAATTCTC
1 TCAATTTCCTTCAAAAATTCTC
*
70101834 TCAATTCCCTTCAAAAATTCTC
1 TCAATTTCCTTCAAAAATTCTC
* *
70101856 TCAAATTCCTTCCAAAATTCTC
1 TCAATTTCCTTCAAAAATTCTC
70101878 TCAA
1 TCAA
70101882 ACTCTCAAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 44 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.37
Consensus pattern (22 bp):
TCAATTTCCTTCAAAAATTCTC
Found at i:70101888 original size:30 final size:30
Alignment explanation
Indices: 70101853--70101911 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
70101843 TTCAAAAATT
*
70101853 CTCTCAAATTCCTTCCAAAATTCTCTCAAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAAA
70101883 CTCTCAAATTCCTTCCAAAATCCTCTCAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAA
70101912 TTTCCTTCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (30 bp):
CTCTCAAATTCCTTCCAAAATCCTCTCAAA
Found at i:70101897 original size:52 final size:51
Alignment explanation
Indices: 70101831--70101933 Score: 136
Period size: 52 Copynumber: 2.0 Consensus size: 51
70101821 TTCAAAAATT
* * *
70101831 CTCTCAATTCCCTTCAAAAATTCTCTCAAATTCCTTCCAAAATTCTCTCAAA
1 CTCTCAATTCCCTTCAAAAATCCTCTCAAATTCCTTCAAAAAATCTC-CAAA
* *
70101883 CTCTCAAATT-CCTTCCAAAATCCTCTCAATTTCCTTCAAAAAATCTCCAAA
1 CTCTC-AATTCCCTTCAAAAATCCTCTCAAATTCCTTCAAAAAATCTCCAAA
70101934 TCCATATTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
51 4 0.09
52 37 0.82
53 4 0.09
ACGTcount: A:0.34, C:0.33, G:0.00, T:0.33
Consensus pattern (51 bp):
CTCTCAATTCCCTTCAAAAATCCTCTCAAATTCCTTCAAAAAATCTCCAAA
Found at i:70101922 original size:21 final size:22
Alignment explanation
Indices: 70101883--70101924 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
70101873 TTCTCTCAAA
70101883 CTCTCAAATTCCTTCCAAAATC
1 CTCTCAAATTCCTTCCAAAATC
* *
70101905 CTCTCAATTTCCTTCAAAAA
1 CTCTCAAATTCCTTCCAAAA
70101925 ATCTCCAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (22 bp):
CTCTCAAATTCCTTCCAAAATC
Found at i:70102016 original size:29 final size:29
Alignment explanation
Indices: 70101965--70102020 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 29
70101955 ATTAAATTTC
70101965 ATTTTTTTAAGAAAATTTTAAATTTTTTT
1 ATTTTTTTAAGAAAATTTTAAATTTTTTT
* *
70101994 ATTTTTTTAA-ATAATTTTAAAATTTTT
1 ATTTTTTTAAGAAAATTTTAAATTTTTT
70102021 AATATTTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 15 0.60
29 10 0.40
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (29 bp):
ATTTTTTTAAGAAAATTTTAAATTTTTTT
Found at i:70102151 original size:22 final size:23
Alignment explanation
Indices: 70102120--70102164 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
70102110 ATTTTATTTA
*
70102120 AGATATTTTATTTATGTATTTTT
1 AGATATTTTATTAATGTATTTTT
*
70102143 AGATA-TTTATTAATTTATTTTT
1 AGATATTTTATTAATGTATTTTT
70102165 TGTTATAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (23 bp):
AGATATTTTATTAATGTATTTTT
Found at i:70105612 original size:124 final size:124
Alignment explanation
Indices: 70105392--70105657 Score: 372
Period size: 124 Copynumber: 2.1 Consensus size: 124
70105382 CCACGAGGGC
* *
70105392 GCGATTTAACACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCCTACATGACCAACTGTAGCG
1 GCGATTTAACACTATTTGCTCAGAAAAGTCAAAAAAAATTATTTCCTACATGACCAACTGCAGCG
* * * * * **
70105457 ATATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCATATAGCATCTTGGTATCA
66 AAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
* * *
70105516 GCGATTTTATACTATTTGCTCAGTAAAAGTCAAAAAAAATTATTTCTTACATGACC-ACTGCAGC
1 GCGATTTAACACTATTTGCTCAG-AAAAGTCAAAAAAAATTATTTCCTACATGACCAACTGCAGC
* *
70105580 GAAATCGCGTCCACGAGGCCACTATTTCACAATTTTTTCTCAAATAGCATCCTGGTAGAA
65 GAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
**
70105640 GCGATTTCCCACTATTTG
1 GCGATTTAACACTATTTG
70105658 ACGAGATACG
Statistics
Matches: 124, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
124 94 0.76
125 30 0.24
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (124 bp):
GCGATTTAACACTATTTGCTCAGAAAAGTCAAAAAAAATTATTTCCTACATGACCAACTGCAGCG
AAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
Found at i:70112485 original size:13 final size:13
Alignment explanation
Indices: 70112469--70112493 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70112459 AAAAATATTT
70112469 TAAAAATAAAAAA
1 TAAAAATAAAAAA
70112482 TAAAAATAAAAA
1 TAAAAATAAAAA
70112494 TATTTTTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
TAAAAATAAAAAA
Found at i:70116416 original size:5 final size:5
Alignment explanation
Indices: 70116406--70116477 Score: 64
Period size: 5 Copynumber: 14.8 Consensus size: 5
70116396 TGTTAAAAAA
* *
70116406 ATATT ATATT ATAGTA ATGATT ATGTT -T-TT ATATT ATATT ATTATT
1 ATATT ATATT ATA-TT AT-ATT ATATT ATATT ATATT ATATT A-TATT
70116452 A-A-T ATATT ATATT ATATT ATA-T ATAT
1 ATATT ATATT ATATT ATATT ATATT ATAT
70116478 ACATAAAACA
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
3 4 0.07
4 8 0.14
5 32 0.57
6 11 0.20
7 1 0.02
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (5 bp):
ATATT
Found at i:70116459 original size:19 final size:19
Alignment explanation
Indices: 70116435--70116477 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
70116425 ATTATGTTTT
70116435 TATATTATATTATTATTA-A
1 TATATTATATTA-TATTATA
70116454 TATATTATATTATATTATA
1 TATATTATATTATATTATA
70116473 TATAT
1 TATAT
70116478 ACATAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TATATTATATTATATTATA
Found at i:70117009 original size:44 final size:45
Alignment explanation
Indices: 70116914--70117047 Score: 162
Period size: 44 Copynumber: 3.0 Consensus size: 45
70116904 ACAGGACAGA
* *
70116914 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
70116960 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * *
70117004 ACAGGAATAATTCATGTAAGTCCATGTTAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
70117048 CAGGATATTG
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
44 37 0.49
45 1 0.01
46 37 0.49
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:70121540 original size:3 final size:3
Alignment explanation
Indices: 70121532--70121567 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
70121522 TATTCCAATG
70121532 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
70121568 GTTTATGCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:70122354 original size:106 final size:105
Alignment explanation
Indices: 70122162--70122368 Score: 360
Period size: 106 Copynumber: 2.0 Consensus size: 105
70122152 AAAATTTTTC
70122162 TAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGAT
1 TAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGAT
* * *
70122227 TTCTTGTTCGACCAAATAGCCAAATATCCTTTTTAAACTTT
66 TTCTCGTTCGACCAAACAGCCAAATAT-CTTCTTAAACTTT
*
70122268 TAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTTTCGAT
1 TAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGAT
*
70122333 TTCTCGTTCGACTAAACAGCCAAATATCTTCTTAAA
66 TTCTCGTTCGACCAAACAGCCAAATATCTTCTTAAA
70122369 GCTTCAAAAT
Statistics
Matches: 96, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
105 8 0.08
106 88 0.92
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.31
Consensus pattern (105 bp):
TAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGAT
TTCTCGTTCGACCAAACAGCCAAATATCTTCTTAAACTTT
Found at i:70124667 original size:5 final size:5
Alignment explanation
Indices: 70124657--70124724 Score: 63
Period size: 5 Copynumber: 13.8 Consensus size: 5
70124647 TGTTAAAAAA
* *
70124657 ATATT ATATT ATAGTA ATGATT ATGTT -T-TT ATATT ATATT ATTATT
1 ATATT ATATT ATA-TT AT-ATT ATATT ATATT ATATT ATATT A-TATT
70124703 A-A-T ATATT ATATT ATATT ATAT
1 ATATT ATATT ATATT ATATT ATAT
70124725 ATACATAAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 14
0.76 0.04 0.20
Matches are distributed among these distances:
3 4 0.08
4 4 0.08
5 33 0.62
6 11 0.21
7 1 0.02
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.57
Consensus pattern (5 bp):
ATATT
Found at i:70124727 original size:19 final size:19
Alignment explanation
Indices: 70124686--70124726 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
70124676 ATTATGTTTT
70124686 TATATTATATTATTATTAA
1 TATATTATATTATTATTAA
70124705 TATATTATATTA-TATT-A
1 TATATTATATTATTATTAA
70124722 TATAT
1 TATAT
70124727 ACATAAAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 6 0.27
18 4 0.18
19 12 0.55
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TATATTATATTATTATTAA
Found at i:70125261 original size:44 final size:45
Alignment explanation
Indices: 70125166--70125299 Score: 162
Period size: 44 Copynumber: 3.0 Consensus size: 45
70125156 ACAGGACAGA
* *
70125166 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
70125212 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * *
70125256 ACAGGAATAATTCATGTAAGTCCATGTTAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
70125300 CAGGATATTG
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
44 37 0.49
45 1 0.01
46 37 0.49
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:70128052 original size:8 final size:8
Alignment explanation
Indices: 70128039--70128153 Score: 68
Period size: 8 Copynumber: 12.8 Consensus size: 8
70128029 CTATAATAAC
70128039 TATAAAAA
1 TATAAAAA
70128047 TATAAAAA
1 TATAAAAA
* *
70128055 TTTACAAAG
1 TATA-AAAA
70128064 TATTAAAAA
1 TA-TAAAAA
*
70128073 CATAAACAA
1 TATAAA-AA
*
70128082 TTATTAAAATT
1 -TA-TAAAA-A
70128093 TATAAAAA
1 TATAAAAA
70128101 TATTAAAATTA
1 TA-TAAAA--A
70128112 TATAAAAA
1 TATAAAAA
70128120 TATAAATAA
1 TATAAA-AA
*
70128129 AAGTAAAGAA
1 TA-TAAA-AA
70128139 TTATAAAAA
1 -TATAAAAA
70128148 TATAAA
1 TATAAA
70128154 TAAATTACAA
Statistics
Matches: 84, Mismatches: 11, Indels: 24
0.71 0.09 0.20
Matches are distributed among these distances:
8 30 0.36
9 25 0.30
10 21 0.25
11 8 0.10
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (8 bp):
TATAAAAA
Found at i:70128123 original size:10 final size:10
Alignment explanation
Indices: 70128042--70128151 Score: 53
Period size: 9 Copynumber: 11.8 Consensus size: 10
70128032 TAATAACTAT
70128042 AAAA-ATATA
1 AAAATATATA
70128051 AAAAT-T-TA
1 AAAATATATA
*
70128059 CAAAGTAT-TA
1 -AAAATATATA
*
70128069 AAAACATA-A
1 AAAATATATA
* *
70128078 ACAAT-TATT
1 AAAATATATA
*
70128087 AAAATTTATA
1 AAAATATATA
70128097 AAAATAT-TA
1 AAAATATATA
*
70128106 AAATTATATA
1 AAAATATATA
70128116 AAAATATA-A
1 AAAATATATA
70128125 ATAAA-AGTA-A
1 A-AAATA-TATA
*
70128135 AGAAT-TATA
1 AAAATATATA
70128144 AAAATATA
1 AAAATATA
70128152 AATAAATTAC
Statistics
Matches: 76, Mismatches: 13, Indels: 23
0.68 0.12 0.21
Matches are distributed among these distances:
8 6 0.08
9 40 0.53
10 30 0.39
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (10 bp):
AAAATATATA
Found at i:70128126 original size:17 final size:18
Alignment explanation
Indices: 70128039--70128122 Score: 82
Period size: 19 Copynumber: 4.6 Consensus size: 18
70128029 CTATAATAAC
*
70128039 TATAAAAATATAAAAATT
1 TATAAAAATATTAAAATT
* * *
70128057 TA-CAAAGTATTAAAA-A
1 TATAAAAATATTAAAATT
*
70128073 CATAAACAATTATTAAAATT
1 TATAAA-AA-TATTAAAATT
70128093 TATAAAAATATTAAAATT
1 TATAAAAATATTAAAATT
70128111 ATATAAAAATAT
1 -TATAAAAATAT
70128123 AAATAAAAGT
Statistics
Matches: 52, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
16 1 0.02
17 12 0.23
18 13 0.25
19 21 0.40
20 5 0.10
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.33
Consensus pattern (18 bp):
TATAAAAATATTAAAATT
Found at i:70128153 original size:18 final size:17
Alignment explanation
Indices: 70128039--70128153 Score: 74
Period size: 18 Copynumber: 6.4 Consensus size: 17
70128029 CTATAATAAC
70128039 TATAAAAATA-TAAAAA
1 TATAAAAATATTAAAAA
* *
70128055 TTTACAAAGTATTAAAAA
1 TATA-AAAATATTAAAAA
* *
70128073 CATAAACAATTATTAAAATT
1 TATAAA-AA-TATTAAAA-A
70128093 TATAAAAATATTAAAATTA
1 TATAAAAATATTAAAA--A
70128112 TATAAAAATA-TAAATAA
1 TATAAAAATATTAAA-AA
*
70128129 AAGTAAAGAAT-TATAAAAA
1 TA-TAAA-AATAT-TAAAAA
70128148 TATAAA
1 TATAAA
70128154 TAAATTACAA
Statistics
Matches: 78, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
16 3 0.04
17 9 0.12
18 29 0.37
19 28 0.36
20 9 0.12
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (17 bp):
TATAAAAATATTAAAAA
Found at i:70129547 original size:37 final size:40
Alignment explanation
Indices: 70129498--70129575 Score: 117
Period size: 37 Copynumber: 2.0 Consensus size: 40
70129488 TAAAAATGAA
* *
70129498 AAAATTATTTTAAAAATAAAAA-AATAA-AAAATA-ATTT
1 AAAAGTATTTTAAAAATAAAAATAAAAATAAAATATATTT
70129535 AAAAGTATTTTAAAAATAAAAATAAAAATAAAATATATTT
1 AAAAGTATTTTAAAAATAAAAATAAAAATAAAATATATTT
70129575 A
1 A
70129576 TTTATTATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
37 21 0.58
38 4 0.11
39 6 0.17
40 5 0.14
ACGTcount: A:0.67, C:0.00, G:0.01, T:0.32
Consensus pattern (40 bp):
AAAAGTATTTTAAAAATAAAAATAAAAATAAAATATATTT
Found at i:70129566 original size:29 final size:29
Alignment explanation
Indices: 70129517--70129575 Score: 68
Period size: 29 Copynumber: 2.0 Consensus size: 29
70129507 TTAAAAATAA
**
70129517 AAAAATAAAAAATAATTTAAAAGTAT-TTT
1 AAAAATAAAAAATAAAATAAAA-TATATTT
70129546 AAAAAT-AAAAATAAAAATAAAATATATTT
1 AAAAATAAAAAAT-AAAATAAAATATATTT
70129575 A
1 A
70129576 TTTATTATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
28 9 0.35
29 17 0.65
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.31
Consensus pattern (29 bp):
AAAAATAAAAAATAAAATAAAATATATTT
Found at i:70132745 original size:13 final size:12
Alignment explanation
Indices: 70132718--70132751 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
70132708 AAATGAATAG
*
70132718 AAGAAAAAAAGA
1 AAGAAAAAAACA
70132730 AAGAAAAAGAACA
1 AAGAAAAA-AACA
70132743 AAGAAAAAA
1 AAGAAAAAA
70132752 GAGAGAAACG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (12 bp):
AAGAAAAAAACA
Found at i:70132995 original size:33 final size:33
Alignment explanation
Indices: 70132953--70133019 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
70132943 AGTAAGACAT
70132953 TTTCCACAGCTCATCTCTTCACTCTCTTCACCC
1 TTTCCACAGCTCATCTCTTCACTCTCTTCACCC
* *
70132986 TTTCCACAGCTCCTCTTTTCACTCTCTTCACCC
1 TTTCCACAGCTCATCTCTTCACTCTCTTCACCC
70133019 T
1 T
70133020 AACGATTGCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.13, C:0.45, G:0.03, T:0.39
Consensus pattern (33 bp):
TTTCCACAGCTCATCTCTTCACTCTCTTCACCC
Found at i:70133049 original size:14 final size:14
Alignment explanation
Indices: 70133030--70133059 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
70133020 AACGATTGCA
70133030 GCCTCATCATCTCT
1 GCCTCATCATCTCT
*
70133044 GCCTCATCTTCTCT
1 GCCTCATCATCTCT
70133058 GC
1 GC
70133060 TAGTTCACCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.10, C:0.43, G:0.10, T:0.37
Consensus pattern (14 bp):
GCCTCATCATCTCT
Found at i:70134722 original size:24 final size:22
Alignment explanation
Indices: 70134679--70134723 Score: 63
Period size: 24 Copynumber: 2.0 Consensus size: 22
70134669 GCAAATGAAT
70134679 AGAAGAAAAAAAAGAAAGAAAA
1 AGAAGAAAAAAAAGAAAGAAAA
*
70134701 AGAACGAAGAAAAAAGAGAGAAA
1 AGAA-GAA-AAAAAAGAAAGAAA
70134724 CGCACGACCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 4 0.20
23 3 0.15
24 13 0.65
ACGTcount: A:0.76, C:0.02, G:0.22, T:0.00
Consensus pattern (22 bp):
AGAAGAAAAAAAAGAAAGAAAA
Found at i:70135089 original size:20 final size:20
Alignment explanation
Indices: 70135052--70135089 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
70135042 GTGAAATTAG
*
70135052 TATGAAAATATAAGATTAAA
1 TATGAAAATATAAAATTAAA
70135072 TATGAAGAAT-TAAAATTA
1 TATGAA-AATATAAAATTA
70135090 GTCTCAGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.58, C:0.00, G:0.11, T:0.32
Consensus pattern (20 bp):
TATGAAAATATAAAATTAAA
Found at i:70135443 original size:25 final size:25
Alignment explanation
Indices: 70135395--70135443 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
70135385 CATAATTGAA
* * *
70135395 ATGAAATGGATTGATTTTGTATATT
1 ATGAAATAGATTGATTATGAATATT
*
70135420 ATGAAATATATTGATTATGAATAT
1 ATGAAATAGATTGATTATGAATAT
70135444 ATGTGGATTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (25 bp):
ATGAAATAGATTGATTATGAATATT
Found at i:70141206 original size:32 final size:32
Alignment explanation
Indices: 70141164--70141243 Score: 119
Period size: 32 Copynumber: 2.5 Consensus size: 32
70141154 CAGTCATTGA
*
70141164 TTTAAA-TTGAATTAAATTTAATTTTC-AAGTT
1 TTTAAATTTGAATTAAA-TTAATTTTCAAAATT
70141195 TTTAAATTTGAATTAAATTAATTTTCAAAATT
1 TTTAAATTTGAATTAAATTAATTTTCAAAATT
*
70141227 TTCAAATTTGAATTAAA
1 TTTAAATTTGAATTAAA
70141244 ATTGAAATGT
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
31 15 0.33
32 30 0.67
ACGTcount: A:0.42, C:0.04, G:0.05, T:0.49
Consensus pattern (32 bp):
TTTAAATTTGAATTAAATTAATTTTCAAAATT
Found at i:70143894 original size:11 final size:11
Alignment explanation
Indices: 70143876--70143905 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
70143866 GTTGAATGGG
70143876 AATTTTTTT-A
1 AATTTTTTTAA
70143886 AATTTTTTTAA
1 AATTTTTTTAA
70143897 AATTTTTTT
1 AATTTTTTT
70143906 GTCAGACCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (11 bp):
AATTTTTTTAA
Found at i:70149557 original size:23 final size:25
Alignment explanation
Indices: 70149522--70149568 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
70149512 ATTTGAACTT
*
70149522 TGAAAAGTAAAAGT-ATTAAATTAC
1 TGAAAAGTAAAAGTAAATAAATTAC
70149546 TGAAAA-TAAAAGTAAATAAATTA
1 TGAAAAGTAAAAGTAAATAAATTA
70149569 ATTTTAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.60, C:0.02, G:0.11, T:0.28
Consensus pattern (25 bp):
TGAAAAGTAAAAGTAAATAAATTAC
Found at i:70152695 original size:46 final size:46
Alignment explanation
Indices: 70152643--70152911 Score: 299
Period size: 46 Copynumber: 5.6 Consensus size: 46
70152633 TTTGAGTACT
* **
70152643 TCTGATCAAATGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAATGACAAAGTGATAAGTGATAGCTTCGGCTACACTTA
* * *
70152689 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAATGAC------AAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
70152741 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAATGACAAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
70152787 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAATGAC------AAAGTGATAAGTGATAGCTTCGGCTACACTTA
**
70152839 TCTGATCAAGA-GACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAA-ATGACAAAGTGATAAGTGATAGCTTCGGCTACACTTA
70152885 TCTGATCAAGA-GACAAAGTGATAAGTG
1 TCTGATCAA-ATGACAAAGTGATAAGTG
70152912 GCTACACTTA
Statistics
Matches: 197, Mismatches: 13, Indels: 26
0.83 0.06 0.11
Matches are distributed among these distances:
46 113 0.57
52 84 0.43
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (46 bp):
TCTGATCAAATGACAAAGTGATAAGTGATAGCTTCGGCTACACTTA
Found at i:70152764 original size:98 final size:98
Alignment explanation
Indices: 70152643--70152911 Score: 448
Period size: 98 Copynumber: 2.7 Consensus size: 98
70152633 TTTGAGTACT
* *
70152643 TCTGATCAAATGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
70152708 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
70152741 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
70152806 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
70152839 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
70152904 GATAAGTG
65 GAAAAGTG
70152912 GCTACACTTA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
98 148 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:70152919 original size:37 final size:37
Alignment explanation
Indices: 70152875--70153020 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
70152865 GATAGCTTTA
*
70152875 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
70152912 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
70152949 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
70152986 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
70153021 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:70156060 original size:31 final size:31
Alignment explanation
Indices: 70156025--70156105 Score: 94
Period size: 31 Copynumber: 2.6 Consensus size: 31
70156015 ACCCTTAGAT
*
70156025 TTTTAGAAATTTTAGTTA-AGCCTTCCAAAAG
1 TTTTAGAAATTTTAATTAGA-CCTTCCAAAAG
* *
70156056 TTTTA-AAATTTTTAATTAGATCTTCCAAAAT
1 TTTTAGAAA-TTTTAATTAGACCTTCCAAAAG
*
70156087 TTTTGGAAATTTTAATTAG
1 TTTTAGAAATTTTAATTAG
70156106 TCTTCTTAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
30 3 0.07
31 36 0.84
32 4 0.09
ACGTcount: A:0.36, C:0.09, G:0.10, T:0.46
Consensus pattern (31 bp):
TTTTAGAAATTTTAATTAGACCTTCCAAAAG
Found at i:70156396 original size:16 final size:16
Alignment explanation
Indices: 70156359--70156403 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
70156349 CCAAAATGAA
*
70156359 TTGAACCCAAAATGGT
1 TTGAACTCAAAATGGT
**
70156375 CGGAACTCAAAATGGT
1 TTGAACTCAAAATGGT
*
70156391 TTGAACTTAAAAT
1 TTGAACTCAAAAT
70156404 AATTTAAACC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.27
Consensus pattern (16 bp):
TTGAACTCAAAATGGT
Found at i:70160962 original size:15 final size:16
Alignment explanation
Indices: 70160925--70160964 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
70160915 TTAGTTTCCT
*
70160925 TTAAAATTTATAAAAA
1 TTAAAATTAATAAAAA
*
70160941 TTTAAATTAATAAAAA
1 TTAAAATTAATAAAAA
70160957 -TAAAATTA
1 TTAAAATTA
70160965 TATTTTAACC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 7 0.33
16 14 0.67
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
TTAAAATTAATAAAAA
Found at i:70162767 original size:22 final size:22
Alignment explanation
Indices: 70162726--70162767 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
70162716 CTATTCTTAG
*
70162726 TCCAATTAGTTTGACCAAACAA
1 TCCAATTAGTTTGACAAAACAA
70162748 TCCAATTTAGTTTGA-AAAAC
1 TCCAA-TTAGTTTGACAAAAC
70162768 CCAGTAAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (22 bp):
TCCAATTAGTTTGACAAAACAA
Found at i:70163700 original size:32 final size:32
Alignment explanation
Indices: 70163635--70163708 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 32
70163625 AATTAAAATT
* * *
70163635 AACTCGAAA-GTCTTGAATTTATAATAATCTA
1 AACTCGAAATGGCTTGAATCTAAAATAATCTA
* *
70163666 AACTCGAAATGGCTTGAATCTAAAATATTTTA
1 AACTCGAAATGGCTTGAATCTAAAATAATCTA
*
70163698 AACTGGAAATG
1 AACTCGAAATG
70163709 AGCAGATTGT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
31 9 0.25
32 27 0.75
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.32
Consensus pattern (32 bp):
AACTCGAAATGGCTTGAATCTAAAATAATCTA
Found at i:70163866 original size:31 final size:32
Alignment explanation
Indices: 70163831--70163910 Score: 94
Period size: 31 Copynumber: 2.6 Consensus size: 32
70163821 ACCCTAAGAT
70163831 TTTTAGAAATTTTAATTAAG-CCTTCCAAAAG
1 TTTTAGAAATTTTAATTAAGACCTTCCAAAAG
* *
70163862 TTTTA-AAATTTTTAATT-AGATCTTCCAAAAT
1 TTTTAGAAA-TTTTAATTAAGACCTTCCAAAAG
* *
70163893 TTTTGGAAATTCTAATTA
1 TTTTAGAAATTTTAATTA
70163911 GTCCTCTCAA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
30 5 0.12
31 33 0.80
32 3 0.07
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (32 bp):
TTTTAGAAATTTTAATTAAGACCTTCCAAAAG
Found at i:70163911 original size:31 final size:30
Alignment explanation
Indices: 70163795--70163925 Score: 90
Period size: 31 Copynumber: 4.2 Consensus size: 30
70163785 AAGCCGTTTG
**
70163795 AAAATTTTAAAAAGTTTTAATTAGATAC--CC
1 AAAATTTTTGAAA-TTTTAATTAGAT-CTTCC
* *
70163825 TAAGATTTTTAGAAATTTTAATTA-AGCCTTCC
1 -AAAATTTTT-GAAATTTTAATTAGA-TCTTCC
* *
70163857 AAAAGTTTTAAAATTTTTAATTAGATCTTCC
1 AAAATTTTTGAAA-TTTTAATTAGATCTTCC
* *
70163888 AAAATTTTTGGAAATTCTAATTAG-TCCTCTC
1 AAAATTTTT-GAAATTTTAATTAGATCTTC-C
70163919 AAAATTT
1 AAAATTT
70163926 CCCGAAATGT
Statistics
Matches: 80, Mismatches: 12, Indels: 16
0.74 0.11 0.15
Matches are distributed among these distances:
30 9 0.11
31 62 0.77
32 9 0.11
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.42
Consensus pattern (30 bp):
AAAATTTTTGAAATTTTAATTAGATCTTCC
Found at i:70166582 original size:28 final size:28
Alignment explanation
Indices: 70166512--70166590 Score: 92
Period size: 28 Copynumber: 2.8 Consensus size: 28
70166502 ATTTTTTTTT
70166512 AATATAAACTGAAAAAAAAAAGAAAAAA
1 AATATAAACTGAAAAAAAAAAGAAAAAA
*
70166540 AAGGA-AAA--GAAAAAAGAAAAAGAAAAAA
1 AA-TATAAACTG-AAAAA-AAAAAGAAAAAA
70166568 AATATAAACTGAAAAAAGAAAAG
1 AATATAAACTGAAAAAA-AAAAG
70166591 CCCCAAAATA
Statistics
Matches: 42, Mismatches: 2, Indels: 13
0.74 0.04 0.23
Matches are distributed among these distances:
26 1 0.02
27 6 0.14
28 23 0.55
29 11 0.26
30 1 0.02
ACGTcount: A:0.77, C:0.03, G:0.13, T:0.08
Consensus pattern (28 bp):
AATATAAACTGAAAAAAAAAAGAAAAAA
Found at i:70170517 original size:21 final size:21
Alignment explanation
Indices: 70170493--70170537 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
70170483 TTTGGACACC
70170493 TATTTATCTAGATCCATTCTA
1 TATTTATCTAGATCCATTCTA
70170514 TATTTATCTAGATCCATTCTA
1 TATTTATCTAGATCCATTCTA
70170535 TAT
1 TAT
70170538 GTATTTTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.04, T:0.49
Consensus pattern (21 bp):
TATTTATCTAGATCCATTCTA
Found at i:70170739 original size:15 final size:15
Alignment explanation
Indices: 70170704--70170755 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
70170694 TTAAGAATTT
*
70170704 TATTAAATTAT-ATA
1 TATTTAATTATAATA
70170718 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
70170732 TATTTAATAATAAT-
1 TATTTAATTATAATA
70170746 TATGTTAATT
1 TAT-TTAATT
70170756 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:70170802 original size:120 final size:120
Alignment explanation
Indices: 70170670--70170991 Score: 617
Period size: 120 Copynumber: 2.7 Consensus size: 120
70170660 TCATTTATCC
*
70170670 AAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATAT
1 AAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATAT
70170735 TTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGT
66 TTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGT
* *
70170790 AAATTCATATAAGAATATTGATTATTAATAATTTTATTAAATTATGTATTTTAATTATAATATAT
1 AAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATAT
70170855 TTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGT
66 TTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGT
70170910 AAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATAT
1 AAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATAT
70170975 TTAATAATAATTATGTT
66 TTAATAATAATTATGTT
70170992 TAAATATGAT
Statistics
Matches: 197, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 197 1.00
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.50
Consensus pattern (120 bp):
AAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATAT
TTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGT
Found at i:70170974 original size:16 final size:16
Alignment explanation
Indices: 70170953--70170994 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
70170943 TTATTAAATT
*
70170953 ATATATTTTAATTATA
1 ATATATTTTAATAATA
70170969 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
70170984 AT-TATGTTTAA
1 ATATAT-TTTAA
70170995 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:70170979 original size:15 final size:15
Alignment explanation
Indices: 70170944--70170985 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
70170934 TTAAGAATTT
*
70170944 TATTAAATTAT-ATA
1 TATTTAATTATAATA
70170958 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
70170972 TATTTAATAATAAT
1 TATTTAATTATAAT
70170986 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:70171182 original size:16 final size:16
Alignment explanation
Indices: 70171163--70171230 Score: 79
Period size: 16 Copynumber: 4.4 Consensus size: 16
70171153 CAAGATTACT
*
70171163 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
*
70171179 ATTACA-TTC-AA-CC
1 ATTACACCTCTAATCC
70171192 TATTACACCTCTAATCC
1 -ATTACACCTCTAATCC
70171209 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
70171225 AATACA
1 ATTACA
70171231 GCGAACCAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
13 2 0.05
14 7 0.16
15 4 0.09
16 29 0.66
17 2 0.05
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.32
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:70172272 original size:32 final size:31
Alignment explanation
Indices: 70172235--70172300 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
70172225 AATCAATTCA
70172235 AAATTTTACATACATAACAAATA-TAATTATAT
1 AAATTTTACAT-CATAA-AAATATTAATTATAT
* * *
70172267 AAATTTTAGATTATTAAAATATTAATTATAT
1 AAATTTTACATCATAAAAATATTAATTATAT
70172298 AAA
1 AAA
70172301 AAATTATGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
30 5 0.17
31 15 0.50
32 10 0.33
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.41
Consensus pattern (31 bp):
AAATTTTACATCATAAAAATATTAATTATAT
Done.