Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 233 of 240
Found at i:70172286 original size:16 final size:16
Alignment explanation
Indices: 70172253--70172306 Score: 60
Period size: 16 Copynumber: 3.5 Consensus size: 16
70172243 CATACATAAC
70172253 AAATA-TAATTATAT-
1 AAATATTAATTATATA
*
70172267 AAATTTTAGATTAT-TA
1 AAATATTA-ATTATATA
70172283 AAATATTAATTATATA
1 AAATATTAATTATATA
*
70172299 AAAAATTA
1 AAATATTA
70172307 TGAAAAGATG
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
14 4 0.12
15 8 0.24
16 21 0.64
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (16 bp):
AAATATTAATTATATA
Found at i:70187066 original size:29 final size:28
Alignment explanation
Indices: 70187034--70187097 Score: 67
Period size: 30 Copynumber: 2.2 Consensus size: 28
70187024 TCAATAAAAA
* *
70187034 TATAAGAAAAATAATATTATTAATATTTT
1 TATAAGAAAAATAAAATT-TAAATATTTT
*
70187063 TATATATGAAATATAAAATTTAAATATTTT
1 TATA-A-GAAAAATAAAATTTAAATATTTT
70187093 T-TAAG
1 TATAAG
70187098 CAATTAATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
27 1 0.03
28 1 0.03
29 6 0.20
30 11 0.37
31 11 0.37
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (28 bp):
TATAAGAAAAATAAAATTTAAATATTTT
Found at i:70187849 original size:12 final size:12
Alignment explanation
Indices: 70187836--70187867 Score: 50
Period size: 10 Copynumber: 2.8 Consensus size: 12
70187826 AGACAGCACT
70187836 TTTTTCTTTT-C
1 TTTTTCTTTTGC
70187847 -TTTTCTTTTGC
1 TTTTTCTTTTGC
70187858 TTTTTCTTTT
1 TTTTTCTTTT
70187868 ACCTAATTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 9 0.47
11 1 0.05
12 9 0.47
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.81
Consensus pattern (12 bp):
TTTTTCTTTTGC
Found at i:70190571 original size:25 final size:25
Alignment explanation
Indices: 70190537--70190585 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
70190527 GGATTTTCAC
70190537 AATTCAAGTGCTAAAAATATTATGG
1 AATTCAAGTGCTAAAAATATTATGG
*
70190562 AATTCAAGTGCTACAAATATTATG
1 AATTCAAGTGCTAAAAATATTATG
70190586 AAGGTCATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (25 bp):
AATTCAAGTGCTAAAAATATTATGG
Found at i:70191181 original size:22 final size:22
Alignment explanation
Indices: 70191156--70191197 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
70191146 CTGTACAGTG
* * *
70191156 TACATGCATGCATATATATACA
1 TACATACATACATACATATACA
70191178 TACATACATACATACATATA
1 TACATACATACATACATATA
70191198 TGCAGCAAGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.45, C:0.19, G:0.05, T:0.31
Consensus pattern (22 bp):
TACATACATACATACATATACA
Found at i:70192582 original size:50 final size:52
Alignment explanation
Indices: 70192501--70192599 Score: 139
Period size: 50 Copynumber: 1.9 Consensus size: 52
70192491 ACCTTAAATG
* * *
70192501 ACCCAACTGAGATACTCAAAATGATCTTGAATGGACCTAAACCCGAAATGAT
1 ACCCAACTGACATACTCAAAACGATCTTGAATGAACCTAAACCCGAAATGAT
* *
70192553 ACCCAACTGACATA-TCCAAACGATC-TGAATTAACCTAAACCCGAAAT
1 ACCCAACTGACATACTCAAAACGATCTTGAATGAACCTAAACCCGAAAT
70192600 AAAATTATCT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
50 20 0.48
51 9 0.21
52 13 0.31
ACGTcount: A:0.41, C:0.26, G:0.12, T:0.20
Consensus pattern (52 bp):
ACCCAACTGACATACTCAAAACGATCTTGAATGAACCTAAACCCGAAATGAT
Found at i:70197826 original size:56 final size:56
Alignment explanation
Indices: 70197740--70197850 Score: 213
Period size: 56 Copynumber: 2.0 Consensus size: 56
70197730 ACTTGCACGG
70197740 GCAATAGGAGAGAGAGGTAGGCAGGGCCTTACCCCTAAATTGTATAGATTTATAAA
1 GCAATAGGAGAGAGAGGTAGGCAGGGCCTTACCCCTAAATTGTATAGATTTATAAA
*
70197796 GCAATAGGAGAGAGGGGTAGGCAGGGCCTTACCCCTAAATTGTATAGATTTATAA
1 GCAATAGGAGAGAGAGGTAGGCAGGGCCTTACCCCTAAATTGTATAGATTTATAA
70197851 GTTAATAAGT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.23
Consensus pattern (56 bp):
GCAATAGGAGAGAGAGGTAGGCAGGGCCTTACCCCTAAATTGTATAGATTTATAAA
Found at i:70198429 original size:16 final size:18
Alignment explanation
Indices: 70198408--70198444 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
70198398 TATTTAAGAG
70198408 TTCATT-AAATTTA-TTC
1 TTCATTGAAATTTAGTTC
*
70198424 TTCATTGAACTTTAGTTC
1 TTCATTGAAATTTAGTTC
70198442 TTC
1 TTC
70198445 TCATTAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 6 0.33
17 6 0.33
18 6 0.33
ACGTcount: A:0.24, C:0.16, G:0.05, T:0.54
Consensus pattern (18 bp):
TTCATTGAAATTTAGTTC
Found at i:70199220 original size:21 final size:23
Alignment explanation
Indices: 70199194--70199240 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
70199184 ACATTTAGAA
*
70199194 TTTAATCACTTT-ATT-TTTTAT
1 TTTAATCAATTTAATTATTTTAT
*
70199215 TTTAATGAATTTAATTATTTTAT
1 TTTAATCAATTTAATTATTTTAT
70199238 TTT
1 TTT
70199241 TTAGATTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 10 0.45
22 3 0.14
23 9 0.41
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (23 bp):
TTTAATCAATTTAATTATTTTAT
Found at i:70202684 original size:16 final size:18
Alignment explanation
Indices: 70202665--70202697 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
70202655 ATTTAAGTAT
70202665 AATAA-TATTTT-ATTTG
1 AATAATTATTTTGATTTG
70202681 AATAATTATTTTGATTT
1 AATAATTATTTTGATTT
70202698 TTAAAATAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 6 0.40
18 4 0.27
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (18 bp):
AATAATTATTTTGATTTG
Found at i:70215837 original size:6 final size:6
Alignment explanation
Indices: 70215792--70215819 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
70215782 CAACGTTCAC
70215792 AGGCCG AGGCCG AGGCCG AGGCCG AGGC
1 AGGCCG AGGCCG AGGCCG AGGCCG AGGC
70215820 AGGGGTGGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.32, G:0.50, T:0.00
Consensus pattern (6 bp):
AGGCCG
Found at i:70217085 original size:13 final size:12
Alignment explanation
Indices: 70217061--70217094 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
70217051 ATTATATTAA
70217061 ATTATT-TAAAT
1 ATTATTATAAAT
70217072 ATTATTTATAAAT
1 ATTA-TTATAAAT
70217085 ATTATTATAA
1 ATTATTATAA
70217095 TAATTTAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 4 0.19
12 8 0.38
13 9 0.43
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
ATTATTATAAAT
Found at i:70217096 original size:24 final size:24
Alignment explanation
Indices: 70217061--70217112 Score: 56
Period size: 24 Copynumber: 2.2 Consensus size: 24
70217051 ATTATATTAA
70217061 ATTATTTAAATATTATTT-A-TAAAT
1 ATTATTTAAATA--ATTTAATTAAAT
70217085 ATTA-TTATAATAATTTAATTAAAT
1 ATTATTTA-AATAATTTAATTAAAT
70217109 ATTA
1 ATTA
70217113 AGTACTATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
22 4 0.16
23 4 0.16
24 17 0.68
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (24 bp):
ATTATTTAAATAATTTAATTAAAT
Found at i:70219302 original size:11 final size:11
Alignment explanation
Indices: 70219274--70219307 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
70219264 TTTTCTCTGA
70219274 TCTTCTTTATTT
1 TCTTCTTT-TTT
70219286 TC-TCTTTTTT
1 TCTTCTTTTTT
70219296 TCTTCTTTTTT
1 TCTTCTTTTTT
70219307 T
1 T
70219308 TTTGCCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 5 0.24
11 14 0.67
12 2 0.10
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (11 bp):
TCTTCTTTTTT
Found at i:70220168 original size:234 final size:229
Alignment explanation
Indices: 70219699--70220204 Score: 789
Period size: 234 Copynumber: 2.2 Consensus size: 229
70219689 TCGTGTTCGG
* * *
70219699 TGAAATTAGATGAATTTGAGGCAGTATAATCTCTTGTTTTAATCGAATCTTGTGTTTGCATGATC
1 TGAAATTAGATGACTTTGAGGCAATTTAATCTCTTGTTTTAATCGAATCTTGTGTTTGCATGATC
* *
70219764 ATATAGTCGAGTTTTGTTTGTCAAAGTTTTCCCCCCTTATTTGATAAATTTGATGTTCTATTATT
66 ATATAATCGAGTTTTGTTTGTCAAAGTTTTCCCCCCTTATTTGATAAAATTGATGTTCTATTATT
*
70219829 GGAAAAAAATGATTAGGAAAATGAAAGATGAATAATTGTAGAAAATTCTTTAATTCCGTTGTTTC
131 GGAAAAAAATGATTAGGAAAATGAAAGATGAATAATTGTAGAAAATTCTTTAATTACGTTGTTTC
*
70219894 ATGCTGATCACTGCTTTAAATTAGTAGTGCTAGA
196 ATGCTAATCACTGCTTTAAATTAGTAGTGCTAGA
* * *
70219928 TGAAATTAGATGACTTTGAGGCAATTTAATCTCTTGTTTTGATCTAATGTTGTGTTTGCATGATC
1 TGAAATTAGATGACTTTGAGGCAATTTAATCTCTTGTTTTAATCGAATCTTGTGTTTGCATGATC
* * **
70219993 GTATAATCGAGTTTTGTTTGTCAATGTTCTTTTTCCCCTTATTTGATAAAATTG-TGGTTCTATT
66 ATATAATCGAGTTTTGTTTGTCAAAG-T-TTTCCCCCCTTATTTGATAAAATTGAT-GTTCTATT
*
70220057 ATTGGAAAAAAAATTGATTAGGAAAATGAAAAGATTAATAATTGTAGAAAATTCTTTAATTACGT
128 ATTGG-AAAAAAA-TGATTAGGAAAATG-AAAGATGAATAATTGTAGAAAATTCTTTAATTACGT
*
70220122 TGTTTCATGCTAATCACTGCTTTAAATTAGTAGTGCTAGC
190 TGTTTCATGCTAATCACTGCTTTAAATTAGTAGTGCTAGA
* *
70220162 TGAAATTAGATAACTTTGAGGCAATTTAATCTCTTATTTTAAT
1 TGAAATTAGATGACTTTGAGGCAATTTAATCTCTTGTTTTAAT
70220205 TGAACCCAAG
Statistics
Matches: 252, Mismatches: 19, Indels: 7
0.91 0.07 0.03
Matches are distributed among these distances:
229 82 0.33
230 2 0.01
231 35 0.14
232 7 0.03
233 14 0.06
234 112 0.44
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.42
Consensus pattern (229 bp):
TGAAATTAGATGACTTTGAGGCAATTTAATCTCTTGTTTTAATCGAATCTTGTGTTTGCATGATC
ATATAATCGAGTTTTGTTTGTCAAAGTTTTCCCCCCTTATTTGATAAAATTGATGTTCTATTATT
GGAAAAAAATGATTAGGAAAATGAAAGATGAATAATTGTAGAAAATTCTTTAATTACGTTGTTTC
ATGCTAATCACTGCTTTAAATTAGTAGTGCTAGA
Found at i:70220377 original size:209 final size:211
Alignment explanation
Indices: 70220002--70220417 Score: 455
Period size: 209 Copynumber: 2.0 Consensus size: 211
70219992 CGTATAATCG
* * **
70220002 AGTTTTGTTTGTCAATGTTCTTTTTCCCCTTATTTGATAAAATTGTGGTTCTATTATTGGAAAAA
1 AGTTTTGTTTGTCAATGTTATTTTTCCCCTTATTTAATAAAATTGTGGTTAAATTATTGGAAAAA
* * * *
70220067 AAATTGATTAGGAAAATGAAAAGATTAATAATTGTAGAAAATTCTTTAATTACGTTGTTTCATGC
66 AAATTGATCAGGAAAAAGAAAAGATGAATAATTGTAGAAAATTCTTTAATTACGTTGTTCCATGC
* * *
70220132 TAATCACTGCTTTAAATTAGTAGTGCTAGCTGAAATT-AGATAACTTTGAGGCAATTTAATCTCT
131 TAATCACTGCTTTAAACTAGTAGTGCTAGATGAAATTAAG-TAACTTTGAGGCAATTTAATCTAT
*
70220196 TATTTTAATTGAACCCA
195 TATTTTAACTGAACCCA
** ** **
70220213 AGTTTTGTTTGTCAA-GTTATTTTTTTCCTTATTTAATAATTTTGCT-GTTAAATTATT-GATGA
1 AGTTTTGTTTGTCAATGTTATTTTTCCCCTTATTTAATAAAATTG-TGGTTAAATTATTGGAAAA
* * * * * * * *
70220275 AAAATTTATCAGTAAAAAGAGAAGATGAATAATTGTTGAAATTTTTTTAGTTATGTTGTTCCATG
65 AAAATTGATCAGGAAAAAGAAAAGATGAATAATTGTAGAAAATTCTTTAATTACGTTGTTCCATG
* * * ** * **
70220340 -TGGATCACTGCTTTAAACTCGTAGTGTTTTATGAAATTAAGTGACTTTGAGGTGATTTAATCTA
130 CT-AATCACTGCTTTAAACTAGTAGTGCTAGATGAAATTAAGTAACTTTGAGGCAATTTAATCTA
*
70220404 TTGTTTTAACTGAA
194 TTATTTTAACTGAA
70220418 TCTTGTGTTT
Statistics
Matches: 167, Mismatches: 35, Indels: 8
0.80 0.17 0.04
Matches are distributed among these distances:
208 1 0.01
209 116 0.69
210 34 0.20
211 16 0.10
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.44
Consensus pattern (211 bp):
AGTTTTGTTTGTCAATGTTATTTTTCCCCTTATTTAATAAAATTGTGGTTAAATTATTGGAAAAA
AAATTGATCAGGAAAAAGAAAAGATGAATAATTGTAGAAAATTCTTTAATTACGTTGTTCCATGC
TAATCACTGCTTTAAACTAGTAGTGCTAGATGAAATTAAGTAACTTTGAGGCAATTTAATCTATT
ATTTTAACTGAACCCA
Found at i:70220621 original size:232 final size:233
Alignment explanation
Indices: 70220211--70220753 Score: 672
Period size: 232 Copynumber: 2.3 Consensus size: 233
70220201 TAATTGAACC
* *
70220211 CAAGTTTTGTTTGTCAAGTTATTTTTTTCCTTATTTAATAATTTTGCTGTTAAATTATTGATGAA
1 CAAGTTTTGTTTGTCAAGTTATTTTTTTTCTTATTTAATAATTTTGATGTTAAATTATTGATG-A
* * *
70220276 AAATTT-ATC-AGTAAAAAGAGAAGATGAATAATTGTTGAAATTTTTTTAGTTATGTTGTTCCAT
65 AAATTTGATCAAGTAAAAAGAAAAGATGAATAATTGTTGAAATTTCTTTAGTTATATTGTTCCAT
** * * *
70220339 GTGGATCACTGCTTTAAACTCGTAGTGTTTTATGAAATTAAGTGACTTTGAGGTGATTTA-ATCT
130 GTGGATCACTGCTTTAAACTCGTAGTGTTAGATGAAATTAAGTAACTTTGAGG-CAATTACATCT
*
70220403 ATTGTTTTAA-CTGAATCTTGTGTTTGCATGATCAAATAAT
194 ATTGTTTTAATCT-AATCTTCTGTTTGCATGATCAAATAAT
* * * ** *
70220443 CAAGTTTTGTTTGTAAAGTTTTTTTTTTTTTTGCTTGATAATTTTGATGTTAAATTATTGATGAA
1 CAAGTTTTGTTTGTCAAGTTATTTTTTTTCTTATTTAATAATTTTGATGTTAAATTATTGATGAA
* * * *
70220508 AATTTGATCAAG-GAAAAGAAAAGATTAATAGTTGTTGAGAA-TTCTTT-GTTATATTGTTTCAT
66 AATTTGATCAAGTAAAAAGAAAAGATGAATAATTGTTGA-AATTTCTTTAGTTATATTGTTCCAT
*
70220570 GTTGG-TCACTGCTTTAAACTTGGTAGTGTTAGATGAAATT-AGATAACTTTGAGGCAATTACAT
130 G-TGGATCACTGCTTTAAAC-TCGTAGTGTTAGATGAAATTAAG-TAACTTTGAGGCAATTACAT
* *
70220633 CTCTTGTTTTAATCTAATCTTCTGTTTGCATGATCATATAAT
192 CTATTGTTTTAATCTAATCTTCTGTTTGCATGATCAAATAAT
* * * *
70220675 CAAGTTCTTGTCTGCCAAGTTAATTTTTTTTCTTATTTTATAATTTTGTTGTTAAATTATTGATG
1 CAAGTT-TTGTTTGTCAAGTT-ATTTTTTTTCTTATTTAATAATTTTGATGTTAAATTATTGATG
* *
70220740 AAAAATTGAGCAAG
64 AAAATTTGATCAAG
70220754 AGTGAATTGT
Statistics
Matches: 266, Mismatches: 35, Indels: 18
0.83 0.11 0.06
Matches are distributed among these distances:
231 41 0.15
232 159 0.60
233 17 0.06
234 49 0.18
ACGTcount: A:0.30, C:0.08, G:0.16, T:0.46
Consensus pattern (233 bp):
CAAGTTTTGTTTGTCAAGTTATTTTTTTTCTTATTTAATAATTTTGATGTTAAATTATTGATGAA
AATTTGATCAAGTAAAAAGAAAAGATGAATAATTGTTGAAATTTCTTTAGTTATATTGTTCCATG
TGGATCACTGCTTTAAACTCGTAGTGTTAGATGAAATTAAGTAACTTTGAGGCAATTACATCTAT
TGTTTTAATCTAATCTTCTGTTTGCATGATCAAATAAT
Found at i:70238268 original size:41 final size:41
Alignment explanation
Indices: 70238210--70238291 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
70238200 AATTATTATC
* *
70238210 CTTTACTTTTATTAAAGTTTGTATGAGTCATTGTACTAGGA
1 CTTTACTTTTATCAAAGTTTGTATAAGTCATTGTACTAGGA
*
70238251 CTTTACTTTTATCAAAGTTTGTATAATTCATTGTACTAGGA
1 CTTTACTTTTATCAAAGTTTGTATAAGTCATTGTACTAGGA
70238292 TTTTTATTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.28, C:0.11, G:0.15, T:0.46
Consensus pattern (41 bp):
CTTTACTTTTATCAAAGTTTGTATAAGTCATTGTACTAGGA
Found at i:70239520 original size:21 final size:22
Alignment explanation
Indices: 70239496--70239538 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
70239486 GAGTAAAAAA
*
70239496 AACTATAATTAT-TATATAATT
1 AACTATAATTATACATATAATT
*
70239517 AACTATTATTATACATATAATT
1 AACTATAATTATACATATAATT
70239539 TTTATTATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (22 bp):
AACTATAATTATACATATAATT
Found at i:70240698 original size:14 final size:15
Alignment explanation
Indices: 70240679--70240715 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
70240669 TTATTTTTGG
70240679 TAAAAAATAATTT-T
1 TAAAAAATAATTTAT
70240693 TAAAAAATAATTTAAT
1 TAAAAAATAATTT-AT
70240709 TAAAAAA
1 TAAAAAA
70240716 AGCCCCTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 13 0.62
16 8 0.38
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
TAAAAAATAATTTAT
Found at i:70243745 original size:218 final size:217
Alignment explanation
Indices: 70243231--70244249 Score: 863
Period size: 218 Copynumber: 4.7 Consensus size: 217
70243221 TGGGTGCTTA
* * * *
70243231 TATATATCATTGTTTTGAGTGATGTAATT-TGTAAAGAATCTATGCTTTTTAGAGGCTTATGATG
1 TATATAGCTTTGTTTTGAGTGATGTAATTAT-TAATGAATCTACGC-TTTTAGAGGCTTATGATG
70243295 ATTAAGAATTGCCTACATTGTCAGACCTTCAGTCTGATGACAACA-AAAAC-TACAAATCTGAGG
64 ATTAAGAATTGCCTACATTGTCAGACCTTCAGTCTGATGA-AA-ATAAAACTTACAAATCTGAGG
* *** * * * **
70243358 CCCAAAGTCAATGGTCATAACTTAAAAACTTATTTTTTGCTGGTGGACCAACCAATTTCATTTTC
127 CCTAAAGTTGCTGGTCATAACTT-AAAACTTA-TTTGTGATGGTGAAAGAACCAATTTCATTTTC
* * *
70243423 T--C--CTTATATCATGCATGTACTCTG
190 TCCCTACTTAAAACATGCATGTAGTCTG
* * * ** *
70243447 TGTATTGCTTTGTTTTGAGTGATGTAATTAGTGAA-GAGCCTATGCTTTTAGAGGCTTATGATGA
1 TATATAGCTTTGTTTTGAGTGATGTAATTA-TTAATGAATCTACGCTTTTAGAGGCTTATGATGA
* * *
70243511 TTAAGAATTGCCTACATTGTCGGACCTTTAGTCTGATGAAAATAGAAA-TTGCAAATCTGAGGCC
65 TTAAGAATTGCCTACATTGTCAGACCTTCAGTCTGATGAAAATA-AAACTTACAAATCTGAGGCC
* *
70243575 TAAAGTTGCCGGTCATAACATAAAACTTATTTGTGATGGTGAAAGAACCAATTTCATTTTCTCCC
129 TAAAGTTGCTGGTCATAACTTAAAACTTATTTGTGATGGTGAAAGAACCAATTTCATTTTCTCCC
*
70243640 TACATTAAAGCATGCATGTAGTCTG
194 TAC-TTAAAACATGCATGTAGTCTG
*
70243665 TATATAGCTTTGTTTTGAGTGATGTAATTATTAATTAATCTACGCTTTTAGAGGCTTATGATGAT
1 TATATAGCTTTGTTTTGAGTGATGTAATTATTAATGAATCTACGCTTTTAGAGGCTTATGATGAT
***
70243730 TAAGAATTGCCTACATTGTCAGACCTTCAGTCTGATGAGGTTAAAACTTACAAATCTGAGGCCTA
66 TAAGAATTGCCTACATTGTCAGACCTTCAGTCTGATGAAAATAAAACTTACAAATCTGAGGCCTA
* * **** * * * * * * *
70243795 AAGTTTCTGGTC--AAGTTATTTGTGATGGTGGTGGTCATGCTTGTTGGGCATGGACCAA--CCG
131 AAGTTGCTGGTCATAACTTAAAACTTAT--T--T-GTGATG---G-T--GAAAGAACCAATTTCA
* **
70243856 TTTTCTCCCTATGTTAAAACATGTGTGTAGTCTG
185 TTTTCTCCCTA-CTTAAAACATGCATGTAGTCTG
* * * * * *
70243890 TATTTGGCTTTGTTTTGAGTGATGTAACTATTAATGAATCTACAGATTTAAGAGGCTCATGATGA
1 TATATAGCTTTGTTTTGAGTGATGTAATTATTAATGAATCTAC-GCTTTTAGAGGCTTATGATGA
* *
70243955 TTAAGAATTGCCTACATTGTCAGACCTTCAGTCTGATGAAATTAAAAGTTACAAATCTGAGGCCT
65 TTAAGAATTGCCTACATTGTCAGACCTTCAGTCTGATGAAAATAAAACTTACAAATCTGAGGCCT
** * **
70244020 AAAGTTGCTGGTTGTAACTTAAAAC----TCG-GA-----CCAG--CCAATTTCATTTTCT-CCT
130 AAAGTTGCTGGTCATAACTTAAAACTTATTTGTGATGGTGAAAGAACCAATTTCATTTTCTCCCT
*
70244072 AATGGTAAAACATGC-TGTA---TG
195 ACT--TAAAACATGCATGTAGTCTG
** * *
70244093 ----TAGCTTTGTTTCCAGTGA--TAATTCTTAATGAATCTACTCTTTTAGAGGCTTATGATGAT
1 TATATAGCTTTGTTTTGAGTGATGTAATTATTAATGAATCTACGCTTTTAGAGGCTTATGATGAT
* * ***
70244152 TAAGAATTGCCTACATTGTCAGATCTGT--GCTCTGATGACAATAAAAGAAACAAAATCTGAGGC
66 TAAGAATTGCCTACATTGTCAGACCT-TCAG-TCTGATGAAAATAAAACTTAC-AAATCTGAGGC
* *
70244215 CTATAGTTGCTGGTCATAACTTAAAAACATATTTG
128 CTAAAGTTGCTGGTCATAACTT-AAAACTTATTTG
70244250 CAACGGACAT
Statistics
Matches: 665, Mismatches: 99, Indels: 92
0.78 0.12 0.11
Matches are distributed among these distances:
195 1 0.00
196 60 0.09
197 48 0.07
198 5 0.01
199 15 0.02
202 2 0.00
203 2 0.00
205 5 0.01
206 8 0.01
207 18 0.03
213 29 0.04
214 11 0.02
215 89 0.13
216 40 0.06
217 9 0.01
218 140 0.21
219 1 0.00
220 1 0.00
221 5 0.01
222 1 0.00
224 1 0.00
225 70 0.11
226 91 0.14
227 8 0.01
228 5 0.01
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.36
Consensus pattern (217 bp):
TATATAGCTTTGTTTTGAGTGATGTAATTATTAATGAATCTACGCTTTTAGAGGCTTATGATGAT
TAAGAATTGCCTACATTGTCAGACCTTCAGTCTGATGAAAATAAAACTTACAAATCTGAGGCCTA
AAGTTGCTGGTCATAACTTAAAACTTATTTGTGATGGTGAAAGAACCAATTTCATTTTCTCCCTA
CTTAAAACATGCATGTAGTCTG
Found at i:70259814 original size:58 final size:58
Alignment explanation
Indices: 70259751--70259901 Score: 148
Period size: 57 Copynumber: 2.6 Consensus size: 58
70259741 AGAGTTGGGC
* * *
70259751 CAAAAAAAATTTAGGCCCAAATGTG-GTAACAATTGCCAAGTGCAA-GCGCTAACTTGGA
1 CAAAAAAAATTCAGGCCCAAATGTGCG-AACAATTGCCAAGTGCAATG-ACTAACTTAGA
* * * *
70259809 C-AAAAAAGTTCAGGCCCCAATTTGCGAACAATTGCCAAGTTCAATGACTAACTTAGA
1 CAAAAAAAATTCAGGCCCAAATGTGCGAACAATTGCCAAGTGCAATGACTAACTTAGA
* *
70259866 CAAAAAAAAAATTCAAGCACC-AATGTGGGAACAATT
1 C--AAAAAAAATTCAGGC-CCAAATGTGCGAACAATT
70259902 ATTAAGTTCA
Statistics
Matches: 76, Mismatches: 11, Indels: 10
0.78 0.11 0.10
Matches are distributed among these distances:
57 46 0.61
58 3 0.04
60 25 0.33
61 2 0.03
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.21
Consensus pattern (58 bp):
CAAAAAAAATTCAGGCCCAAATGTGCGAACAATTGCCAAGTGCAATGACTAACTTAGA
Found at i:70262973 original size:59 final size:59
Alignment explanation
Indices: 70262881--70262999 Score: 229
Period size: 59 Copynumber: 2.0 Consensus size: 59
70262871 ATAATTGTTC
70262881 ATTAAAAACGAAAATAAGAAATGCAATAACAATATTGACATTATCAATTACATGAAAAA
1 ATTAAAAACGAAAATAAGAAATGCAATAACAATATTGACATTATCAATTACATGAAAAA
*
70262940 ATTAAAAACGAAAATATGAAATGCAATAACAATATTGACATTATCAATTACATGAAAAA
1 ATTAAAAACGAAAATAAGAAATGCAATAACAATATTGACATTATCAATTACATGAAAAA
70262999 A
1 A
70263000 ATAGAATCAT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.57, C:0.10, G:0.08, T:0.24
Consensus pattern (59 bp):
ATTAAAAACGAAAATAAGAAATGCAATAACAATATTGACATTATCAATTACATGAAAAA
Found at i:70269942 original size:13 final size:13
Alignment explanation
Indices: 70269924--70269951 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
70269914 GTGCCATCGA
70269924 TTAACACACTAAT
1 TTAACACACTAAT
70269937 TTAACACACTAAT
1 TTAACACACTAAT
70269950 TT
1 TT
70269952 TTTTTAATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (13 bp):
TTAACACACTAAT
Found at i:70275416 original size:21 final size:21
Alignment explanation
Indices: 70275384--70275424 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
70275374 AATATCAGTT
70275384 TTTAATATTTATAT-TTTTTAA
1 TTTAATATTTAT-TCTTTTTAA
70275405 TTTAAT-TCTTATTCTTTTTA
1 TTTAATAT-TTATTCTTTTTA
70275425 GTTAACTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (21 bp):
TTTAATATTTATTCTTTTTAA
Found at i:70276410 original size:29 final size:30
Alignment explanation
Indices: 70276354--70276422 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 30
70276344 TTGGTCTTAT
* * * *
70276354 TTGATTTTTTTTAATAGTATAGGGACTAAA
1 TTGATTATATTTAATAGTAAAGGAACTAAA
* *
70276384 TTGA-TATATTTAATAGTAAATGAACTAAT
1 TTGATTATATTTAATAGTAAAGGAACTAAA
70276413 TTGATTATAT
1 TTGATTATAT
70276423 CTCTATAATA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 23 0.72
30 9 0.28
ACGTcount: A:0.38, C:0.03, G:0.13, T:0.46
Consensus pattern (30 bp):
TTGATTATATTTAATAGTAAAGGAACTAAA
Found at i:70276795 original size:14 final size:14
Alignment explanation
Indices: 70276776--70276804 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
70276766 AAATAAATAT
70276776 ATTTTTTAATTTTA
1 ATTTTTTAATTTTA
70276790 ATTTTTTAATTTTA
1 ATTTTTTAATTTTA
70276804 A
1 A
70276805 AATACTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
ATTTTTTAATTTTA
Found at i:70276839 original size:24 final size:25
Alignment explanation
Indices: 70276810--70276860 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
70276800 TTTAAAATAC
* * *
70276810 TTTTAAAA-TATTTTTTATTTTTTA
1 TTTTAAAACAATTTTTTAATGTTTA
70276834 TTTTAAAACAATTTTTTAATGTTTA
1 TTTTAAAACAATTTTTTAATGTTTA
70276859 TT
1 TT
70276861 AAAAAATAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (25 bp):
TTTTAAAACAATTTTTTAATGTTTA
Found at i:70276858 original size:25 final size:24
Alignment explanation
Indices: 70276810--70276867 Score: 66
Period size: 25 Copynumber: 2.5 Consensus size: 24
70276800 TTTAAAATAC
* * *
70276810 TTTTAAAATATTTTTTATTTTTTA
1 TTTTAAAAAATTTTTTAATGTTTA
70276834 TTTTAAAACAATTTTTTAATGTTTA
1 TTTTAAAA-AATTTTTTAATGTTTA
70276859 --TTAAAAAAT
1 TTTTAAAAAAT
70276868 AGGCCGGGCC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 3 0.10
23 6 0.20
24 8 0.27
25 13 0.43
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (24 bp):
TTTTAAAAAATTTTTTAATGTTTA
Found at i:70277780 original size:19 final size:19
Alignment explanation
Indices: 70277756--70277798 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
70277746 TGTGAAGTTT
70277756 ATTGATGAATATTTATATA
1 ATTGATGAATATTTATATA
* *
70277775 ATTGATTAATATTTTTATA
1 ATTGATGAATATTTATATA
*
70277794 TTTGA
1 ATTGA
70277799 AATTTATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.53
Consensus pattern (19 bp):
ATTGATGAATATTTATATA
Found at i:70286937 original size:21 final size:21
Alignment explanation
Indices: 70286895--70286937 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
70286885 TCCCTTATAG
*
70286895 TCAATTTAATTTTCATTTTTT
1 TCAATTTAATTTTCATTCTTT
70286916 TCAATTTAATTTTC-TATCTTT
1 TCAATTTAATTTTCAT-TCTTT
70286937 T
1 T
70286938 GGAAGAGTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.23, C:0.12, G:0.00, T:0.65
Consensus pattern (21 bp):
TCAATTTAATTTTCATTCTTT
Found at i:70294591 original size:48 final size:50
Alignment explanation
Indices: 70294499--70294596 Score: 128
Period size: 54 Copynumber: 1.9 Consensus size: 50
70294489 ATGACAACTG
* *
70294499 TACTTTGCCAAGTTTCTAAGTTTGGTATTTGTTCTTACTTTCATGACTTTTATT
1 TACTTTGCCAAGTTACTAAGTTTGGTATTTG----TACTCTCATGACTTTTATT
70294553 TACTTTGCCAAGTTACTAAGTTTGGTATTTG-A-TCTCATGACTTT
1 TACTTTGCCAAGTTACTAAGTTTGGTATTTGTACTCTCATGACTTT
70294597 ACCATTTGTC
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
48 11 0.26
49 1 0.02
54 30 0.71
ACGTcount: A:0.20, C:0.15, G:0.14, T:0.50
Consensus pattern (50 bp):
TACTTTGCCAAGTTACTAAGTTTGGTATTTGTACTCTCATGACTTTTATT
Found at i:70297417 original size:22 final size:22
Alignment explanation
Indices: 70297368--70297417 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
70297358 CACTTGTAAT
*
70297368 TTTTTATTAAAAAAATAATAAC
1 TTTTTCTTAAAAAAATAATAAC
70297390 TTTTTCTTAAAAAAATAATAAC
1 TTTTTCTTAAAAAAATAATAAC
70297412 TTTTTC
1 TTTTTC
70297418 ATTCTTTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (22 bp):
TTTTTCTTAAAAAAATAATAAC
Found at i:70298685 original size:13 final size:15
Alignment explanation
Indices: 70298655--70298686 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
70298645 ATATTTCATG
70298655 CATTTCATCAATAAT
1 CATTTCATCAATAAT
70298670 CATTTCAT-AA-AAT
1 CATTTCATCAATAAT
70298683 CATT
1 CATT
70298687 ATTTCATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 2 0.12
15 8 0.47
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (15 bp):
CATTTCATCAATAAT
Found at i:70299252 original size:39 final size:39
Alignment explanation
Indices: 70299204--70299386 Score: 222
Period size: 39 Copynumber: 4.4 Consensus size: 39
70299194 AACGGTAGCA
* *
70299204 GTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCTG
1 GTAACAGTAACAGTATTCGACACACAAAGTGCCGAATC-G
*
70299244 TAATAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCG
1 -----GTAACAGTAACAG------TATTCGACACACAAAGTGCCGAATCG
70299294 GTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCG
1 GTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCG
*
70299333 GTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCA
1 GTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCG
70299372 GTAACAGTAACAGTA
1 GTAACAGTAACAGTA
70299387 ACAGTAGTCG
Statistics
Matches: 129, Mismatches: 3, Indels: 18
0.86 0.02 0.12
Matches are distributed among these distances:
39 78 0.60
45 26 0.20
50 1 0.01
51 24 0.19
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (39 bp):
GTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCG
Found at i:70299259 original size:51 final size:51
Alignment explanation
Indices: 70299187--70299308 Score: 190
Period size: 51 Copynumber: 2.4 Consensus size: 51
70299177 AGTAAATAGT
* * *
70299187 AATCAGTAACGGTAGCAGTAACAGTAACAGTATTCAACACACAAAGTGCTG
1 AATCGGTAACAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTG
* * *
70299238 AATCTGTAATAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTG
1 AATCGGTAACAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTG
70299289 AATCGGTAACAGTAACAGTA
1 AATCGGTAACAGTAACAGTA
70299309 TTCGACACAC
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 64 1.00
ACGTcount: A:0.42, C:0.18, G:0.19, T:0.21
Consensus pattern (51 bp):
AATCGGTAACAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTG
Found at i:70306199 original size:3 final size:3
Alignment explanation
Indices: 70306191--70306218 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
70306181 AACAATTTAC
70306191 CAT CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT C
70306219 GTAACGCATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:70314416 original size:17 final size:18
Alignment explanation
Indices: 70314384--70314417 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
70314374 TATATTTTTA
*
70314384 TTAATATAATTTTAATTT
1 TTAATATAAATTTAATTT
70314402 TTAAT-TAAATTTAATT
1 TTAATATAAATTTAATT
70314418 CTCTTTTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
TTAATATAAATTTAATTT
Found at i:70315661 original size:27 final size:26
Alignment explanation
Indices: 70315591--70315664 Score: 86
Period size: 21 Copynumber: 3.0 Consensus size: 26
70315581 CTCAAATTTG
*
70315591 CAATTTATTATTCACATGCCAAACAAC
1 CAATTTATTATTCAC-TGCCAACCAAC
70315618 CAATTTATTA-T---T-CCAACCAAC
1 CAATTTATTATTCACTGCCAACCAAC
70315639 CAATTTATTATTCACGTGCCAACCAA
1 CAATTTATTATTCAC-TGCCAACCAA
70315665 TTTGTTTTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
21 18 0.45
22 2 0.05
26 2 0.05
27 18 0.45
ACGTcount: A:0.38, C:0.27, G:0.04, T:0.31
Consensus pattern (26 bp):
CAATTTATTATTCACTGCCAACCAAC
Found at i:70316790 original size:27 final size:27
Alignment explanation
Indices: 70316760--70316852 Score: 99
Period size: 27 Copynumber: 3.7 Consensus size: 27
70316750 AATTTGCAAT
70316760 TTATTATTCACAAGCCAAACAACCAAA
1 TTATTATTCACAAGCCAAACAACCAAA
70316787 TTATTATTC-CAA--C---CAACCAAA
1 TTATTATTCACAAGCCAAACAACCAAA
* * * *
70316808 TTATTATGCACATGCCAAACAGCCAAT
1 TTATTATTCACAAGCCAAACAACCAAA
*
70316835 TTATTATTCACATGCCAA
1 TTATTATTCACAAGCCAA
70316853 CCAATTTGTT
Statistics
Matches: 55, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
21 16 0.29
22 2 0.04
24 2 0.04
26 3 0.05
27 32 0.58
ACGTcount: A:0.41, C:0.26, G:0.05, T:0.28
Consensus pattern (27 bp):
TTATTATTCACAAGCCAAACAACCAAA
Found at i:70316803 original size:21 final size:21
Alignment explanation
Indices: 70316774--70316814 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
70316764 TATTCACAAG
70316774 CCAAACAACCAAATTATTATT
1 CCAAACAACCAAATTATTATT
*
70316795 CCAACCAACCAAATTATTAT
1 CCAAACAACCAAATTATTAT
70316815 GCACATGCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.46, C:0.27, G:0.00, T:0.27
Consensus pattern (21 bp):
CCAAACAACCAAATTATTATT
Found at i:70320537 original size:25 final size:20
Alignment explanation
Indices: 70320489--70320526 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
70320479 AAAAAGTTAT
70320489 AGAAAATAAACAAAAAAGGA
1 AGAAAATAAACAAAAAAGGA
70320509 AGAAAATAAACAAAAAAG
1 AGAAAATAAACAAAAAAG
70320527 AAACGCAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.76, C:0.05, G:0.13, T:0.05
Consensus pattern (20 bp):
AGAAAATAAACAAAAAAGGA
Found at i:70321394 original size:132 final size:131
Alignment explanation
Indices: 70321219--70321543 Score: 510
Period size: 132 Copynumber: 2.5 Consensus size: 131
70321209 GCGAGTTTTG
* * *
70321219 TGGTTTAAATTTGCTTC-CCTACTACCTTAGGAAGATAAAATTCA-CAGTCTTCGATCTGCTCCA
1 TGGTTTAAATCTGCTTCTCC-ACTATCTT-GGAAGATAAGATTCACCA-TCTTCGATCTGCTCCA
* *
70321282 CTACTGCTTAGGGTGACAGAATCCGCAATCTTCAACCTACTCCATTATTGCTTAGGGAGATAAGA
63 CTACTGCTTAGGGTGACAGAATCCGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAAGA
70321347 CTAA
128 CTAA
70321351 TGGTTTAAATCTGCTTCTCCACTATCTTGGAAAGATAAGATTCACCATCTTCGATCTGCTCCACT
1 TGGTTTAAATCTGCTTCTCCACTATCTTGG-AAGATAAGATTCACCATCTTCGATCTGCTCCACT
* * *
70321416 ACTGCTTAGGGTGACAGAATCTGCGATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACT
65 ACTGCTTAGGGTGACAGAATCCGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAAGACT
70321481 AA
130 AA
*
70321483 TGGTTTAAATCTACTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTC
1 TGGTTTAAATCTGCTTCTCCACTATCTT-GGAAGATAAGATTCACCATCTTCGATCTGCTC
70321544 TACTGCAACT
Statistics
Matches: 180, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
131 2 0.01
132 172 0.96
133 6 0.03
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (131 bp):
TGGTTTAAATCTGCTTCTCCACTATCTTGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTA
CTGCTTAGGGTGACAGAATCCGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAAGACTA
A
Found at i:70321762 original size:50 final size:50
Alignment explanation
Indices: 70321645--70322983 Score: 734
Period size: 50 Copynumber: 26.9 Consensus size: 50
70321635 TGTTCGTCGA
** * * *
70321645 GGAAGTAAGATTCGCCGTTGCGGCCTCAATCTTTT-AATTACAATGTC-G
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAATTGCAATGCCTG
** * * * *** *
70321693 AAAAAGCAAGATTCACCGTTGTGGCTTCAATCTTTTCCGCTGCACTGCCTG
1 -GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAATTGCAATGCCTG
* * * * * * *
70321744 GAAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTAAATTACAATGTCAG
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAATTGCAATGCCTG
* * * * *** * *
70321794 GGAAGTGAGATTTGCCGTCGTAGCTTCAATCTGTTCCGCTAC-ATCACCTG
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAATTGCAAT-GCCTG
* *
70321844 GGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAATG--T-
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAATTGCAATGCCTG
* * * *** * *
70321891 -GAAGTGAGATTCGCCGTCGTAGCTTCAATCTATTCTGCTGCACTGCTTG
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAATTGCAATGCCTG
* * * * *
70321940 GAAAGTAAGATTCGCCATTGTAGCTTCAATCTTTTTAATTGCAATGTCGG
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAATTGCAATGCCTG
* * * ** *
70321990 GGAAGCAAGATTCGTCGTTGT-GACTTCAATCTGTTCCGTTGC-ATCGACTG
1 GGAAGTAAGATTCGCCGTTGTAG-CTTCAATCTTTTCAATTGCAAT-GCCTG
* * * * * *
70322040 AGAAATAAGATTCGCTGTTGT-GACTTCAATCTTTTAAATTACAATGTC-G
1 GGAAGTAAGATTCGCCGTTGTAG-CTTCAATCTTTTCAATTGCAATGCCTG
* ** * * ***
70322089 AGGAAGCAAGATTCGTTGTTGTAACTTCAATCTGTTCCGCTGC-ATCGCCTG
1 -GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAATTGCAAT-GCCTG
** * * * *
70322140 GGAAGTAAGATTCGTTGTTGTGGCTTCAATCTTTTAAATTGCAATGTCGG
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAATTGCAATGCCTG
* * * * * * * * *
70322190 GGAAGTGAGACTCGCCATCGTAGCTTCAATCTATTCCACTGCACTGCTTG
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAATTGCAATGCCTG
* * * *
70322240 GAAAGTAAGATTCGCCATTGTAGCTTCAATC-TTTCTAATTGCAATGTCGG
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTC-AATTGCAATGCCTG
* * * ** * *
70322290 GGAAGCAAGATTCACCATTGT-GACTTCAATCTACTCCACTGCAATG-CTAG
1 GGAAGTAAGATTCGCCGTTGTAG-CTTCAATCTTTTCAATTGCAATGCCT-G
* * ** * * * *
70322340 GAAAGTAAGATCCGTTGTTGTAGCTTCAATCTTTTTAATTGTAATGTCAG
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAATTGCAATGCCTG
* * * * * *
70322390 GGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACG-CTAG
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAATTGCAATGCCT-G
* * * * *
70322440 GAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTT-AATTGCAATGTCAG
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTT-TTCAATTGCAATGCCTG
* * * * * *
70322490 GGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACG-CTAG
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAATTGCAATGCCT-G
* * * * *
70322540 GAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTT-AATTGCAATGTCAG
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTT-TTCAATTGCAATGCCTG
* * * * *
70322590 GGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACG-CTAG
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAATTGCAATGCCT-G
* * * * * * * * *
70322640 GAAAGTAATATCCGCTGTTATAGCTTCAATCTTTTAAATTACAATGTCAG
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAATTGCAATGCCTG
* ** * * * ** *
70322690 GGAATTAAGATTCGCTATTGTAGCTTCAATCTGTTCCACTATAACG-CTAG
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAATTGCAATGCCT-G
* ** * *
70322740 GAAAGTAAGA-TCTGCTATTGTAGCTTCAATCTTCTT-AATTGCAATGTCAG
1 GGAAGTAAGATTC-GCCGTTGTAGCTTCAATCTT-TTCAATTGCAATGCCTG
* * * * * * *
70322790 GGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGTAACG-CTAG
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAATTGCAATGCCT-G
* ** * *
70322840 GAAAGTAAGA-TCTGCTATTGTAGCTTCAATCTTCTT-AATTGCAATGTCAG
1 GGAAGTAAGATTC-GCCGTTGTAGCTTCAATCTT-TTCAATTGCAATGCCTG
* * * * * * * *
70322890 GGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTACAACG-CTAT
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAATTGCAATGCCT-G
* * * *
70322940 GAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAA
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAATTGCAA
70322984 ACTATGGTTT
Statistics
Matches: 984, Mismatches: 261, Indels: 89
0.74 0.20 0.07
Matches are distributed among these distances:
46 36 0.04
48 2 0.00
49 59 0.06
50 860 0.87
51 27 0.03
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (50 bp):
GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAATTGCAATGCCTG
Found at i:70321831 original size:100 final size:99
Alignment explanation
Indices: 70321647--70322983 Score: 1383
Period size: 100 Copynumber: 13.4 Consensus size: 99
70321637 TTCGTCGAGG
* ** * * ** * * *
70321647 AAGTAAGATTCGCCGTTGCGGCCTCAATCTTTTAATTACAATGTC-GAAAAAGCAAGATTCACCG
1 AAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTAATTGCAATGTCAG-GGAAGTAAGATTCGCTG
* * *
70321711 TTGTGGCTTCAATCTTTTCCGCTGCACTGCCT-GGA
65 TTGTAGCTTCAATCTGTTCCACTGCACTG-CTAGGA
* * * * * * *
70321746 AAGTAAGATTCACCGTTGTGGCTTCAATCTTTTAAATTACAATGTCAGGGAAGTGAGATTTGCCG
1 AAGTAAGATTCGCTGTTGTAGCTTCAATCTTTT-AATTGCAATGTCAGGGAAGTAAGATTCGCTG
* * * ** *
70321811 TCGTAGCTTCAATCTGTTCCGCTACATCACCT-GGG
65 TTGTAGCTTCAATCTGTTCCACTGCA-CTGCTAGGA
* * * *
70321846 AAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAATGT----GAAGTGAGATTCGCCG
1 AAGTAAGATTCGCTGTTGTAGCTTCAATCTTTT-AATTGCAATGTCAGGGAAGTAAGATTCGCTG
* * ** *
70321907 TCGTAGCTTCAATCTATTCTGCTGCACTGCTTGGA
65 TTGTAGCTTCAATCTGTTCCACTGCACTGCTAGGA
** * *
70321942 AAGTAAGATTCGCCATTGTAGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCG-TC
1 AAGTAAGATTCGCTGTTGTAGCTTCAATC-TTTTAATTGCAATGTCAGGGAAGTAAGATTCGCT-
**
70322006 GTTGT-GACTTCAATCTGTTCCGTTGCA-TCGACT-GAGA
64 GTTGTAG-CTTCAATCTGTTCCACTGCACT-G-CTAG-GA
* * *
70322043 AA-TAAGATTCGCTGTTGT-GACTTCAATCTTTTAAATTACAATGTC-GAGGAAGCAAGATTCGT
1 AAGTAAGATTCGCTGTTGTAG-CTTCAATCTTTT-AATTGCAATGTCAG-GGAAGTAAGATTCGC
* * *
70322105 TGTTGTAACTTCAATCTGTTCCGCTGCA-TCGCCT-GGG
63 TGTTGTAGCTTCAATCTGTTCCACTGCACT-G-CTAGGA
* * * * * **
70322142 AAGTAAGATTCGTTGTTGTGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGTGAGACTCGCCA
1 AAGTAAGATTCGCTGTTGTAGCTTCAATCTTTT-AATTGCAATGTCAGGGAAGTAAGATTCGCTG
* * *
70322207 TCGTAGCTTCAATCTATTCCACTGCACTGCTTGGA
65 TTGTAGCTTCAATCTGTTCCACTGCACTGCTAGGA
** * * * **
70322242 AAGTAAGATTCGCCATTGTAGCTTCAATCTTTCTAATTGCAATGTCGGGGAAGCAAGATTCACCA
1 AAGTAAGATTCGCTGTTGTAGCTTCAATCTTT-TAATTGCAATGTCAGGGAAGTAAGATTCGCTG
** *
70322307 TTGT-GACTTCAATCTACTCCACTGCAATGCTAGGA
65 TTGTAG-CTTCAATCTGTTCCACTGCACTGCTAGGA
* * * *
70322342 AAGTAAGATCCGTTGTTGTAGCTTCAATCTTTTTAATTGTAATGTCAGGGAAGTAAGATCCGCTG
1 AAGTAAGATTCGCTGTTGTAGCTTCAATC-TTTTAATTGCAATGTCAGGGAAGTAAGATTCGCTG
70322407 TTGTAGCTTCAATCTGTTCCACTGCAAC-GCTAGGA
65 TTGTAGCTTCAATCTGTTCCACTGC-ACTGCTAGGA
* *
70322442 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTG
1 AAGTAAGATTCGCTGTTGTAGCTTCAATCTT-TTAATTGCAATGTCAGGGAAGTAAGATTCGCTG
70322507 TTGTAGCTTCAATCTGTTCCACTGCAAC-GCTAGGA
65 TTGTAGCTTCAATCTGTTCCACTGC-ACTGCTAGGA
*
70322542 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATTCGCTG
1 AAGTAAGATTCGCTGTTGTAGCTTCAATCTT-TTAATTGCAATGTCAGGGAAGTAAGATTCGCTG
70322607 TTGTAGCTTCAATCTGTTCCACTGCAAC-GCTAGGA
65 TTGTAGCTTCAATCTGTTCCACTGC-ACTGCTAGGA
* * * * * *
70322642 AAGTAATATCCGCTGTTATAGCTTCAATCTTTTAAATTACAATGTCAGGGAATTAAGATTCGCTA
1 AAGTAAGATTCGCTGTTGTAGCTTCAATCTTTT-AATTGCAATGTCAGGGAAGTAAGATTCGCTG
**
70322707 TTGTAGCTTCAATCTGTTCCACTATAAC-GCTAGGA
65 TTGTAGCTTCAATCTGTTCCACT-GCACTGCTAGGA
* *
70322742 AAGTAAGA-TCTGCTATTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCT
1 AAGTAAGATTC-GCTGTTGTAGCTTCAATCTT-TTAATTGCAATGTCAGGGAAGTAAGATTCGCT
*
70322806 GTTGTAGCTTCAATCTGTTCCACTGTAAC-GCTAGGA
64 GTTGTAGCTTCAATCTGTTCCACTG-CACTGCTAGGA
* *
70322842 AAGTAAGA-TCTGCTATTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCT
1 AAGTAAGATTC-GCTGTTGTAGCTTCAATCTT-TTAATTGCAATGTCAGGGAAGTAAGATTCGCT
* *
70322906 GTTGTAGCTTCAATCTGTTCCACTACAAC-GCTATGA
64 GTTGTAGCTTCAATCTGTTCCACTGC-ACTGCTAGGA
*
70322942 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAA
1 AAGTAAGATTCGCTGTTGTAGCTTCAATC-TTTTAATTGCAA
70322984 ACTATGGTTT
Statistics
Matches: 1095, Mismatches: 105, Indels: 75
0.86 0.08 0.06
Matches are distributed among these distances:
95 3 0.00
96 78 0.07
97 4 0.00
99 49 0.04
100 938 0.86
101 23 0.02
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (99 bp):
AAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTAATTGCAATGTCAGGGAAGTAAGATTCGCTGT
TGTAGCTTCAATCTGTTCCACTGCACTGCTAGGA
Found at i:70324314 original size:13 final size:13
Alignment explanation
Indices: 70324296--70324320 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70324286 TCACCCTGGC
70324296 CTCTTTTTTTTTT
1 CTCTTTTTTTTTT
70324309 CTCTTTTTTTTT
1 CTCTTTTTTTTT
70324321 CAACTCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (13 bp):
CTCTTTTTTTTTT
Found at i:70325470 original size:6 final size:6
Alignment explanation
Indices: 70325459--70325510 Score: 56
Period size: 6 Copynumber: 9.0 Consensus size: 6
70325449 TTGACCTCTC
* *
70325459 CTTTTT CTTTTT CTTTTT C-TTCT -TTTTT CTTTTT CTCTTT -TTTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT
70325504 CTATTTT
1 CT-TTTT
70325511 GACTTTGATT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
5 10 0.26
6 24 0.63
7 4 0.11
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (6 bp):
CTTTTT
Found at i:70325502 original size:16 final size:16
Alignment explanation
Indices: 70325466--70325501 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
70325456 CTCCTTTTTC
70325466 TTTTTCTTTTTCTTCT
1 TTTTTCTTTTTCTTCT
70325482 TTTTTCTTTTTC-TCT
1 TTTTTCTTTTTCTTCT
70325497 TTTTT
1 TTTTT
70325502 TTCTATTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (16 bp):
TTTTTCTTTTTCTTCT
Found at i:70325534 original size:9 final size:9
Alignment explanation
Indices: 70325520--70325562 Score: 70
Period size: 9 Copynumber: 4.9 Consensus size: 9
70325510 TGACTTTGAT
70325520 TTTTTTTTA
1 TTTTTTTTA
70325529 TTTTTTTTA
1 TTTTTTTTA
*
70325538 -TTTTTTGA
1 TTTTTTTTA
70325546 TTTTTTTTA
1 TTTTTTTTA
70325555 TTTTTTTT
1 TTTTTTTT
70325563 TGAGTCTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
8 7 0.23
9 24 0.77
ACGTcount: A:0.09, C:0.00, G:0.02, T:0.88
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:70325536 original size:26 final size:25
Alignment explanation
Indices: 70325513--70325562 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 25
70325503 TCTATTTTGA
70325513 CTTTGATTTTTTTTTATTTTTTTTATT
1 CTTTGA-TTTTTTTTATTTTTTTTA-T
*
70325540 TTTTGATTTTTTTTATTTTTTTT
1 CTTTGATTTTTTTTATTTTTTTT
70325563 TGAGTCTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.10, C:0.02, G:0.04, T:0.84
Consensus pattern (25 bp):
CTTTGATTTTTTTTATTTTTTTTAT
Found at i:70325541 original size:17 final size:17
Alignment explanation
Indices: 70325521--70325561 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
70325511 GACTTTGATT
70325521 TTTTTTTATTTTTTTTA
1 TTTTTTTATTTTTTTTA
*
70325538 TTTTTTGATTTTTTTTA
1 TTTTTTTATTTTTTTTA
70325555 TTTTTTT
1 TTTTTTT
70325562 TTGAGTCTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.10, C:0.00, G:0.02, T:0.88
Consensus pattern (17 bp):
TTTTTTTATTTTTTTTA
Found at i:70326313 original size:17 final size:18
Alignment explanation
Indices: 70326281--70326317 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
70326271 TCTGCACAGT
70326281 ATGATTATGAATGAAAGA
1 ATGATTATGAATGAAAGA
*
70326299 ATGATT-TGGATGAAAGA
1 ATGATTATGAATGAAAGA
70326316 AT
1 AT
70326318 AAAAGAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.30
Consensus pattern (18 bp):
ATGATTATGAATGAAAGA
Found at i:70330593 original size:14 final size:14
Alignment explanation
Indices: 70330574--70330612 Score: 78
Period size: 14 Copynumber: 2.8 Consensus size: 14
70330564 CTGTCGGCTT
70330574 TAGCGCCACCGCCG
1 TAGCGCCACCGCCG
70330588 TAGCGCCACCGCCG
1 TAGCGCCACCGCCG
70330602 TAGCGCCACCG
1 TAGCGCCACCG
70330613 TGGACGGTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.15, C:0.49, G:0.28, T:0.08
Consensus pattern (14 bp):
TAGCGCCACCGCCG
Found at i:70334123 original size:51 final size:51
Alignment explanation
Indices: 70334047--70334182 Score: 166
Period size: 51 Copynumber: 2.7 Consensus size: 51
70334037 GATGAACACG
* * *
70334047 TGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAA-ATAATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAGAAGAT-ATGGTCACA
* * * * * *
70334098 TGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAGAAGCTTTGGTTACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAGAAGATATGGTCACA
*
70334149 TGTGTAGTACTTTGTGAAGGCTACTACGTGTACC
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACC
70334183 AGACTGATAG
Statistics
Matches: 72, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
51 71 0.99
52 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (51 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAGAAGATATGGTCACA
Found at i:70334263 original size:48 final size:48
Alignment explanation
Indices: 70334202--70334373 Score: 220
Period size: 48 Copynumber: 3.6 Consensus size: 48
70334192 GGTCGCATAT
*
70334202 GTGGCACGGACTGTGTGCAGGCCACCGATATTCTGTTATGATACAAGA
1 GTGGCACGGACTGTGTGCAGGCCACCGATAATCTGTTATGATACAAGA
* *
70334250 GTGGCACGGACTGTGTGCAGGCCACCGATAACCTGTTATGATACAAGG
1 GTGGCACGGACTGTGTGCAGGCCACCGATAATCTGTTATGATACAAGA
* * * * * *
70334298 GTGGCATGGACTATGTGCAGGCCACCGAGAATCTATTATTACACAA-A
1 GTGGCACGGACTGTGTGCAGGCCACCGATAATCTGTTATGATACAAGA
* * *
70334345 GGTGGTACGCATTGTGTGCAGGCCACCGA
1 -GTGGCACGGACTGTGTGCAGGCCACCGA
70334374 AAAATCTATT
Statistics
Matches: 107, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
48 107 1.00
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.23
Consensus pattern (48 bp):
GTGGCACGGACTGTGTGCAGGCCACCGATAATCTGTTATGATACAAGA
Found at i:70338307 original size:14 final size:14
Alignment explanation
Indices: 70338273--70338307 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
70338263 AAGTCCAAGA
70338273 CAGAATCAGATAAG
1 CAGAATCAGATAAG
*
70338287 CAAAATCAGATAAG
1 CAGAATCAGATAAG
*
70338301 TAGAATC
1 CAGAATC
70338308 CTACCCTCAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.51, C:0.14, G:0.17, T:0.17
Consensus pattern (14 bp):
CAGAATCAGATAAG
Found at i:70343912 original size:2 final size:2
Alignment explanation
Indices: 70343907--70343933 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
70343897 TATATGAATG
70343907 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
70343934 AATACTTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:70347645 original size:31 final size:31
Alignment explanation
Indices: 70347607--70347670 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
70347597 TTACTTCATC
70347607 GTCCTTGCTTGCCGCCACCAGATAGAGCGTA
1 GTCCTTGCTTGCCGCCACCAGATAGAGCGTA
*
70347638 GTCCTTGCTTGCCGCCACTAGATAGAGCGTA
1 GTCCTTGCTTGCCGCCACCAGATAGAGCGTA
70347669 GT
1 GT
70347671 AGGAAGGGTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.19, C:0.30, G:0.27, T:0.25
Consensus pattern (31 bp):
GTCCTTGCTTGCCGCCACCAGATAGAGCGTA
Found at i:70348172 original size:6 final size:6
Alignment explanation
Indices: 70348161--70348208 Score: 60
Period size: 6 Copynumber: 7.5 Consensus size: 6
70348151 ATATGCTTTC
*
70348161 TTTATT TTTATT TTTATT TTTATT TTTAGTTGT TTTGTT TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTTA--T-T TTTATT TTTATT TTT
70348209 TAGGCTTCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
6 31 0.84
7 1 0.03
8 1 0.03
9 4 0.11
ACGTcount: A:0.12, C:0.00, G:0.06, T:0.81
Consensus pattern (6 bp):
TTTATT
Found at i:70351140 original size:439 final size:438
Alignment explanation
Indices: 70350214--70351450 Score: 1950
Period size: 439 Copynumber: 2.8 Consensus size: 438
70350204 CTAATTCTCT
* * * *
70350214 AGATACCTAGGAGA-ACTAAACCCTATGATGAATTCTATTATTTGATTTATGTTTTACATGATAA
1 AGATACCTAGGGGAGA-TGAACCCTATGATGAATTCAATTATTTGATTTATGTTTTACACGATAA
* *
70350278 ATACTTGAATCTTGTT-TTCAGTTATGTGTACTTATCTCTTATTTTAATATTTCCTTAATATTAA
65 ATACTTGAATCTTGTTCTT-AGTTATGTGTGCTTATCTCTTATTTTAATATTT-TTTAATATTAA
*
70350342 TTCATGTTTAATGTGCTTAAATCAGAGGAGGAAAAGTCTCTGTTTAAGAGTAGATCTAGTTTAAT
128 TTCATGTTTAATGTACTTAAATCAGAGGAGGAAAAGTCTCTGTTTAAGAGTAGATCTAGTTTAAT
* * * *
70350407 TGAGTGGAGTTGCATGCAATCTTACAAATAGGACGACATAAATCCACCGGATTAGAGTCAAATCT
193 TGAGTGGAGTTGCATGCAATCCTA-AAAAAGGACGACATAAATCTACTGGATTAGAGTCAAATCT
*
70350472 AATAGGGGAATTCATAGATCGAGTTAATG-AGATAATAGGGGTTTTAATTAGAAATAAATTTCAA
257 AATAGGGGAATTCATAGATCGAGTTAATGCA-ATAATAGGGGTTTTAATTAGAAAGAAATTTCAA
* *
70350536 TTAATCAACCTAGAGTCAGTTGCTATTAGTCTCGAAAAGAATTCACCTAGACTTCATCTATTATT
321 TTAATCAACCTAGAGTCAGTTGCTCTTAGTCTCGAAAAGAATTCACCTAGACTTCATCTATCATT
70350601 ATGAATATGAATTAAATGATTTATTCACTTAGTATCTTGATCCGTAGAAATCC
386 ATGAATATGAATTAAATGATTTATTCACTTAGTATCTTGATCCGTAGAAATCC
*
70350654 AGATACCTAGGGGAGATGAACCCTATGATGAATT-ATATTATTTGATTTTTGTTTTACACGATAA
1 AGATACCTAGGGGAGATGAACCCTATGATGAATTCA-ATTATTTGATTTATGTTTTACACGATAA
* *
70350718 ATACTGGAATCTTGTTCTTAGTTATGTGTGCTTATCTCTTATTTTAATATTTTTTGAATATTAGT
65 ATACTTGAATCTTGTTCTTAGTTATGTGTGCTTATCTCTTATTTTAATATTTTTT-AATATTAAT
*
70350783 TCATGTTTAATGTACTTAAATCAGAGGAGGAAAAGTCTTTGTTTAAGAGTAGATCTAGTTTAATT
129 TCATGTTTAATGTACTTAAATCAGAGGAGGAAAAGTCTCTGTTTAAGAGTAGATCTAGTTTAATT
* * * *
70350848 CAGTGGAGTTGCATGCAATCCTAGAAAAAGGACAATATAAATCTACTGGATTAGAGTCAAATTTA
194 GAGTGGAGTTGCATGCAATCCTA-AAAAAGGACGACATAAATCTACTGGATTAGAGTCAAATCTA
*
70350913 ATA-GGGAATTCATAGAACGAGTTAATGCAATAATAGGGGTTTTAATTAGAAAGAAATTTCAATT
258 ATAGGGGAATTCATAGATCGAGTTAATGCAATAATAGGGGTTTTAATTAGAAAGAAATTTCAATT
* * *
70350977 AATCAACCTAGAATCAGTTGCTCTTAGTCTCGTAAAGAATTCACCTAGACTTCATCTGTCATTAT
323 AATCAACCTAGAGTCAGTTGCTCTTAGTCTCGAAAAGAATTCACCTAGACTTCATCTATCATTAT
*
70351042 GAATCTGAATTAAATGATTTATTCACTTAGTATCTTGATCCGTAGAAATCC
388 GAATATGAATTAAATGATTTATTCACTTAGTATCTTGATCCGTAGAAATCC
* *
70351093 AGATACCTAGGGGAGATGAACCCTATGATGAATTCAATTACTTGATTTCTGTTTTACACGATAAA
1 AGATACCTAGGGGAGATGAACCCTATGATGAATTCAATTATTTGATTTATGTTTTACACGATAAA
70351158 TACTTGAATCTTGTTCTTAGTTATGTGTGCTTATCTCTTATTTTAATATTATTTTAATATTAATT
66 TACTTGAATCTTGTTCTTAGTTATGTGTGCTTATCTCTTATTTTAATATT-TTTTAATATTAATT
* * * * *
70351223 CATGTTTAATGTTCTTAAATCATAGGAGGAAAAGTCTCTATTT-TGAGTAGATCTAGTATAATTG
130 CATGTTTAATGTACTTAAATCAGAGGAGGAAAAGTCTCTGTTTAAGAGTAGATCTAGTTTAATTG
*
70351287 AGTGGAGTCGCATGCAATCCTAAAAATAGGACGACATAAATCTACTGGATTAGAGTCAAATCTAA
195 AGTGGAGTTGCATGCAATCCTAAAAA-AGGACGACATAAATCTACTGGATTAGAGTCAAATCTAA
* * * * *
70351352 TAGGGGAATCCATAGATCGAGTTAATGCGATAATA-GGGTTTTAATTACAAAGAAGTTT-AATTC
259 TAGGGGAATTCATAGATCGAGTTAATGCAATAATAGGGGTTTTAATTAGAAAGAAATTTCAATTA
* *
70351415 ATCAACCTAGAGTCAATTGTTCTTAGTCTCGAAAAG
324 ATCAACCTAGAGTCAGTTGCTCTTAGTCTCGAAAAG
70351451 GATATCAGCA
Statistics
Matches: 735, Mismatches: 53, Indels: 21
0.91 0.07 0.03
Matches are distributed among these distances:
437 40 0.05
438 97 0.13
439 356 0.48
440 239 0.33
441 3 0.00
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.37
Consensus pattern (438 bp):
AGATACCTAGGGGAGATGAACCCTATGATGAATTCAATTATTTGATTTATGTTTTACACGATAAA
TACTTGAATCTTGTTCTTAGTTATGTGTGCTTATCTCTTATTTTAATATTTTTTAATATTAATTC
ATGTTTAATGTACTTAAATCAGAGGAGGAAAAGTCTCTGTTTAAGAGTAGATCTAGTTTAATTGA
GTGGAGTTGCATGCAATCCTAAAAAAGGACGACATAAATCTACTGGATTAGAGTCAAATCTAATA
GGGGAATTCATAGATCGAGTTAATGCAATAATAGGGGTTTTAATTAGAAAGAAATTTCAATTAAT
CAACCTAGAGTCAGTTGCTCTTAGTCTCGAAAAGAATTCACCTAGACTTCATCTATCATTATGAA
TATGAATTAAATGATTTATTCACTTAGTATCTTGATCCGTAGAAATCC
Found at i:70351211 original size:11 final size:11
Alignment explanation
Indices: 70351195--70351219 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
70351185 TGCTTATCTC
70351195 TTATTTTAATA
1 TTATTTTAATA
70351206 TTATTTTAATA
1 TTATTTTAATA
70351217 TTA
1 TTA
70351220 ATTCATGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TTATTTTAATA
Found at i:70353647 original size:8 final size:7
Alignment explanation
Indices: 70353599--70353646 Score: 51
Period size: 8 Copynumber: 6.1 Consensus size: 7
70353589 ATCTCCTAGG
70353599 TTTTATT
1 TTTTATT
70353606 TTTTATTT
1 TTTTA-TT
70353614 TTTTATT
1 TTTTATT
70353621 TTTTAGTGT
1 TTTTA-T-T
70353630 GTTTTATT
1 -TTTTATT
70353638 TATTTATT
1 T-TTTATT
70353646 T
1 T
70353647 AATTTATTAG
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
7 13 0.36
8 16 0.44
9 2 0.06
10 5 0.14
ACGTcount: A:0.15, C:0.00, G:0.06, T:0.79
Consensus pattern (7 bp):
TTTTATT
Found at i:70361322 original size:17 final size:17
Alignment explanation
Indices: 70361300--70361333 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
70361290 ATCCACTAAT
*
70361300 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
70361317 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
70361334 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:70365961 original size:17 final size:17
Alignment explanation
Indices: 70365939--70365972 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
70365929 ATCCACTAAT
*
70365939 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
70365956 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
70365973 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:70367283 original size:113 final size:111
Alignment explanation
Indices: 70367087--70367308 Score: 392
Period size: 113 Copynumber: 2.0 Consensus size: 111
70367077 ACAAGTAGTC
70367087 AAAGGGTCAAAAAGAAAAAAAGATGATTGGTTAAGGGTAAAAAGAAAAATAAGAGAAATGAAGAA
1 AAAGGGTCAAAAAGAAAAAAAGATGATTGGTTAAGGGTAAAAAGAAAAATAAGAGAAATGAAGAA
70367152 GAAAAAGAAAAGAAGAACAGGGAAGGAAGAAGGGAAAATGGAAGTA
66 GAAAAAGAAAAGAAGAACAGGGAAGGAAGAAGGGAAAATGGAAGTA
70367198 AAAGGGTCAAAAAGAAAAGAAAAGATGATTGGTTAAGGGTAAAAAGAAAAATAAGAGAAATCG-A
1 AAAGGGTCAAAAAG-AAA-AAAAGATGATTGGTTAAGGGTAAAAAGAAAAATAAGAGAAAT-GAA
* *
70367262 GAAGAAGAAGAAAAGAAGAACAGGGGAGGAAGAAGGGAAAATGGAAG
63 GAAGAAAAAGAAAAGAAGAACAGGGAAGGAAGAAGGGAAAATGGAAG
70367309 GAGCTTCCAA
Statistics
Matches: 106, Mismatches: 2, Indels: 4
0.95 0.02 0.04
Matches are distributed among these distances:
111 14 0.13
112 3 0.03
113 88 0.83
114 1 0.01
ACGTcount: A:0.58, C:0.02, G:0.30, T:0.09
Consensus pattern (111 bp):
AAAGGGTCAAAAAGAAAAAAAGATGATTGGTTAAGGGTAAAAAGAAAAATAAGAGAAATGAAGAA
GAAAAAGAAAAGAAGAACAGGGAAGGAAGAAGGGAAAATGGAAGTA
Found at i:70374397 original size:27 final size:26
Alignment explanation
Indices: 70374367--70374437 Score: 80
Period size: 21 Copynumber: 2.9 Consensus size: 26
70374357 CTCAAATTTG
*
70374367 CAATTTAGTATTCACAAGCCAAACAAC
1 CAATTTATTATTCACAAGCC-AACAAC
70374394 CAATTTATTATTC-CAA--C--CAAC
1 CAATTTATTATTCACAAGCCAACAAC
*
70374415 CAATTTATTATTCACATGCCAAC
1 CAATTTATTATTCACAAGCCAAC
70374438 CAATTTGTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
21 17 0.46
22 2 0.05
24 2 0.05
26 4 0.11
27 12 0.32
ACGTcount: A:0.39, C:0.27, G:0.04, T:0.30
Consensus pattern (26 bp):
CAATTTATTATTCACAAGCCAACAAC
Found at i:70381729 original size:25 final size:25
Alignment explanation
Indices: 70381695--70381748 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
70381685 TTTTTTTAAG
*
70381695 AATTGATTGTTTGTAATTAAATTCA
1 AATTAATTGTTTGTAATTAAATTCA
*
70381720 AATTAATTGTTTGTAATTAAATTTA
1 AATTAATTGTTTGTAATTAAATTCA
70381745 AATT
1 AATT
70381749 TAAATTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.39, C:0.02, G:0.09, T:0.50
Consensus pattern (25 bp):
AATTAATTGTTTGTAATTAAATTCA
Found at i:70382191 original size:39 final size:39
Alignment explanation
Indices: 70382137--70382217 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
70382127 ATCAAGCAAG
70382137 ATACTGGTCCAGAAGAAAAGGATAAACCAATTGAATGGA
1 ATACTGGTCCAGAAGAAAAGGATAAACCAATTGAATGGA
70382176 ATACTGGTCCAGAAGAAAAGGATAAACCAATTGAATGGA
1 ATACTGGTCCAGAAGAAAAGGATAAACCAATTGAATGGA
70382215 ATA
1 ATA
70382218 GTAAAATCGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.47, C:0.12, G:0.22, T:0.19
Consensus pattern (39 bp):
ATACTGGTCCAGAAGAAAAGGATAAACCAATTGAATGGA
Found at i:70383730 original size:3 final size:3
Alignment explanation
Indices: 70383722--70383765 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
70383712 TTTAACTCAA
70383722 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
70383766 AGAATAAAGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:70392577 original size:49 final size:49
Alignment explanation
Indices: 70392524--70392633 Score: 211
Period size: 49 Copynumber: 2.2 Consensus size: 49
70392514 ATGTTTGACT
70392524 ATGATTTTTAAATACGGTGTTAATTGTATATAGCACGTGATGTTGTACA
1 ATGATTTTTAAATACGGTGTTAATTGTATATAGCACGTGATGTTGTACA
*
70392573 ATGATTTTTAAATACTGTGTTAATTGTATATAGCACGTGATGTTGTACA
1 ATGATTTTTAAATACGGTGTTAATTGTATATAGCACGTGATGTTGTACA
70392622 ATGATTTTTAAA
1 ATGATTTTTAAA
70392634 GACTCTTAAA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 60 1.00
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (49 bp):
ATGATTTTTAAATACGGTGTTAATTGTATATAGCACGTGATGTTGTACA
Found at i:70403842 original size:21 final size:23
Alignment explanation
Indices: 70403806--70403847 Score: 70
Period size: 21 Copynumber: 1.9 Consensus size: 23
70403796 CCTAGTCCAC
70403806 TTATATTAATTTTTTAAATATTT
1 TTATATTAATTTTTTAAATATTT
70403829 TTATA-TAA-TTTTTAAATAT
1 TTATATTAATTTTTTAAATAT
70403848 ATATAATACA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 11 0.58
22 3 0.16
23 5 0.26
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (23 bp):
TTATATTAATTTTTTAAATATTT
Found at i:70403849 original size:23 final size:23
Alignment explanation
Indices: 70403806--70403849 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
70403796 CCTAGTCCAC
*
70403806 TTATATTAATTTTTTAAATATTT
1 TTATATTAATTTTTAAAATATTT
70403829 TTATA-TAATTTTTAAATATAT
1 TTATATTAATTTTTAAA-ATAT
70403850 ATAATACATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (23 bp):
TTATATTAATTTTTAAAATATTT
Found at i:70404289 original size:11 final size:9
Alignment explanation
Indices: 70404263--70404297 Score: 52
Period size: 9 Copynumber: 3.7 Consensus size: 9
70404253 GGTAAAATCG
70404263 ATTTTTAAT
1 ATTTTTAAT
70404272 ATTTTTAAT
1 ATTTTTAAT
70404281 ATATCTTTAAT
1 AT-T-TTTAAT
70404292 ATTTTT
1 ATTTTT
70404298 TAAAATTCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 14 0.58
10 2 0.08
11 8 0.33
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (9 bp):
ATTTTTAAT
Found at i:70409873 original size:16 final size:16
Alignment explanation
Indices: 70409854--70409885 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
70409844 CTTTAAAAAT
*
70409854 TATAATTATAAAATTA
1 TATAATAATAAAATTA
70409870 TATAATAATAAAATTA
1 TATAATAATAAAATTA
70409886 CGCTTTTAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TATAATAATAAAATTA
Found at i:70411834 original size:20 final size:21
Alignment explanation
Indices: 70411806--70411844 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
70411796 TAGACTTAAT
70411806 ATTTATATT-TTTTTAATTTG
1 ATTTATATTCTTTTTAATTTG
*
70411826 ATTTTTATTCTTTTTAATT
1 ATTTATATTCTTTTTAATT
70411845 AAATTTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72
Consensus pattern (21 bp):
ATTTATATTCTTTTTAATTTG
Found at i:70411850 original size:21 final size:20
Alignment explanation
Indices: 70411801--70411851 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
70411791 AAATTTAGAC
70411801 TTAATATTTATATTTTTTTAA
1 TTAA-ATTTATATTTTTTTAA
** *
70411822 TTTGATTTTTATTCTTTTTAA
1 TTAAATTTATATT-TTTTTAA
70411843 TTAAATTTA
1 TTAAATTTA
70411852 ATTCTCTACC
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (20 bp):
TTAAATTTATATTTTTTTAA
Found at i:70411855 original size:20 final size:21
Alignment explanation
Indices: 70411801--70411856 Score: 53
Period size: 20 Copynumber: 2.7 Consensus size: 21
70411791 AAATTTAGAC
70411801 TTAATATTTATATT-TTTTTAAT
1 TTAA-ATTTA-ATTCTTTTTAAT
* * *
70411823 TTGATTTTTATTCTTTTTAA-
1 TTAAATTTAATTCTTTTTAAT
70411843 TTAAATTTAATTCT
1 TTAAATTTAATTCT
70411857 CTACCTTTTG
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
20 14 0.52
21 10 0.37
22 3 0.11
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.66
Consensus pattern (21 bp):
TTAAATTTAATTCTTTTTAAT
Found at i:70412184 original size:3 final size:3
Alignment explanation
Indices: 70412176--70412206 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
70412166 ATTTAGCTCA
70412176 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
70412207 GAATAGAGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:70414173 original size:25 final size:25
Alignment explanation
Indices: 70414120--70414173 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
70414110 TGATTAATAT
* *
70414120 TTTTTATATTTAAAGTTTATTTAAT
1 TTTTTATATTTAAAGTTTATTAAAG
70414145 TTTTTATATATTAAA-TATT-TTAAAG
1 TTTTTATAT-TTAAAGT-TTATTAAAG
70414170 TTTT
1 TTTT
70414174 ATCAATAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (25 bp):
TTTTTATATTTAAAGTTTATTAAAG
Found at i:70415462 original size:20 final size:20
Alignment explanation
Indices: 70415428--70415465 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
70415418 AATATTTTAC
*
70415428 TAAATTAATCCATTTAATGG
1 TAAATTAATCAATTTAATGG
*
70415448 TAAATTAATTAATTTAAT
1 TAAATTAATCAATTTAAT
70415466 CAAATCCATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (20 bp):
TAAATTAATCAATTTAATGG
Found at i:70425448 original size:18 final size:20
Alignment explanation
Indices: 70425410--70425449 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
70425400 GTGTTTATAT
*
70425410 TTTTATTAATATAATTTTAA
1 TTTTATTAATATAAATTTAA
70425430 TTTT-TTAAT-TAAATTTAA
1 TTTTATTAATATAAATTTAA
70425448 TT
1 TT
70425450 CTCTTTTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 10 0.53
19 5 0.26
20 4 0.21
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTATTAATATAAATTTAA
Found at i:70426693 original size:27 final size:26
Alignment explanation
Indices: 70426623--70426696 Score: 86
Period size: 21 Copynumber: 3.0 Consensus size: 26
70426613 CTCAAATTTG
*
70426623 CAATTTATTATTCACATGCCAAACAAC
1 CAATTTATTATTCAC-TGCCAACCAAC
70426650 CAATTTATTA-T---T-CCAACCAAC
1 CAATTTATTATTCACTGCCAACCAAC
70426671 CAATTTATTATTCACGTGCCAACCAA
1 CAATTTATTATTCAC-TGCCAACCAA
70426697 TTTGTTTTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
21 18 0.45
22 2 0.05
26 2 0.05
27 18 0.45
ACGTcount: A:0.38, C:0.27, G:0.04, T:0.31
Consensus pattern (26 bp):
CAATTTATTATTCACTGCCAACCAAC
Found at i:70427822 original size:27 final size:27
Alignment explanation
Indices: 70427792--70427884 Score: 99
Period size: 27 Copynumber: 3.7 Consensus size: 27
70427782 AATTTGCAAT
70427792 TTATTATTCACAAGCCAAACAACCAAA
1 TTATTATTCACAAGCCAAACAACCAAA
70427819 TTATTATTC-CAA--C---CAACCAAA
1 TTATTATTCACAAGCCAAACAACCAAA
* * * *
70427840 TTATTATGCACATGCCAAACAGCCAAT
1 TTATTATTCACAAGCCAAACAACCAAA
*
70427867 TTATTATTCACATGCCAA
1 TTATTATTCACAAGCCAA
70427885 CCAATTTGTT
Statistics
Matches: 55, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
21 16 0.29
22 2 0.04
24 2 0.04
26 3 0.05
27 32 0.58
ACGTcount: A:0.41, C:0.26, G:0.05, T:0.28
Consensus pattern (27 bp):
TTATTATTCACAAGCCAAACAACCAAA
Found at i:70427835 original size:21 final size:21
Alignment explanation
Indices: 70427806--70427846 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
70427796 TATTCACAAG
70427806 CCAAACAACCAAATTATTATT
1 CCAAACAACCAAATTATTATT
*
70427827 CCAACCAACCAAATTATTAT
1 CCAAACAACCAAATTATTAT
70427847 GCACATGCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.46, C:0.27, G:0.00, T:0.27
Consensus pattern (21 bp):
CCAAACAACCAAATTATTATT
Found at i:70430380 original size:49 final size:49
Alignment explanation
Indices: 70430327--70430437 Score: 143
Period size: 49 Copynumber: 2.3 Consensus size: 49
70430317 TTCTCATGAA
* **
70430327 GATGATTTTTAAACACCATATTAATTGTTTATGGGT-CATCATGTTTGAC
1 GATGATTTTTAAACACCATATTAATTGTATA-CAGTACATCATGTTTGAC
* *
70430376 GATGATTTTTAAATACCATGTTAATTGTATACAGTACATCATGTTTGAC
1 GATGATTTTTAAACACCATATTAATTGTATACAGTACATCATGTTTGAC
* *
70430425 AATAATTTTTAAA
1 GATGATTTTTAAA
70430438 GACTTTTAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
48 2 0.04
49 52 0.96
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (49 bp):
GATGATTTTTAAACACCATATTAATTGTATACAGTACATCATGTTTGAC
Found at i:70446701 original size:19 final size:21
Alignment explanation
Indices: 70446663--70446701 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
70446653 AATAATTGAT
*
70446663 TATATTGTTGTTATTATTTTG
1 TATATTGTTGTTAATATTTTG
70446684 TATATT-TTG-TAATATTTT
1 TATATTGTTGTTAATATTTT
70446702 TTGTTTTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 3 0.18
21 6 0.35
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.67
Consensus pattern (21 bp):
TATATTGTTGTTAATATTTTG
Found at i:70452543 original size:123 final size:121
Alignment explanation
Indices: 70452412--70452741 Score: 393
Period size: 122 Copynumber: 2.7 Consensus size: 121
70452402 AAAATTACCT
** **
70452412 TTTTTTTCTTT-TTTTTTCC-TTCATTCCCTCTTCTTCTACTTT-TTTTTTCTC-TTCTCCTTTC
1 TTTTTTTCTTTCTCCTTTCCTTTCATTCCCTCTT-TT-T-CTTTCTTTCCTCTCATT-T-CTTTC
* *
70452473 CTTTTCTTTCCTTCTTTCTTTC-TTTTTTATTCTCTTTTCCTTTTCTTCTTCTTCTTTTTTTC
61 CTTTTCTCT-C-TCTTTCTTTCTTTTTTTATTCTCTTTTCCTTTTCTTCTTCTTCTTTCTTTC
* * *
70452535 TTTTTTTCTCTTCTCCTTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCCTCTCATTTCTTTCTTT
1 TTTTTTTCT-TTCTCCTTTCC-TTTCATTCCCTCTTTTTCTTTCTTTCCTCTCATTTCTTTCCTT
70452600 TTCTCTCTCTTTCTTTCTTTTTTTATTCTCTTTTCCTTTTCTTCTTCTTCTTTCTTTC
64 TTCTCTCTCTTTCTTTCTTTTTTTATTCTCTTTTCCTTTTCTTCTTCTTCTTTCTTTC
* * * *
70452658 -TTTTTTCTCTTCTCCTTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCCTCTCCTTTCTTTCTTT
1 TTTTTTTCT-TTCTCCTTTCC-TTTCATTCCCTCTTTTTCTTTCTTTCCTCTCATTTCTTTCCTT
*
70452722 TTCTCTTTCTTTCTTTCTTT
64 TTCTCTCTCTTTCTTTCTTT
70452742 CTTTCCCTCT
Statistics
Matches: 189, Mismatches: 11, Indels: 15
0.88 0.05 0.07
Matches are distributed among these distances:
122 92 0.49
123 49 0.26
124 18 0.10
125 15 0.08
126 4 0.02
127 11 0.06
ACGTcount: A:0.02, C:0.28, G:0.00, T:0.70
Consensus pattern (121 bp):
TTTTTTTCTTTCTCCTTTCCTTTCATTCCCTCTTTTTCTTTCTTTCCTCTCATTTCTTTCCTTTT
CTCTCTCTTTCTTTCTTTTTTTATTCTCTTTTCCTTTTCTTCTTCTTCTTTCTTTC
Found at i:70452546 original size:24 final size:26
Alignment explanation
Indices: 70452513--70452746 Score: 84
Period size: 25 Copynumber: 9.2 Consensus size: 26
70452503 TCTCTTTTCC
*
70452513 TTTTCTTCTTCTTCTTT-TTTTCTTT
1 TTTTCTTCTTCTCCTTTCTTTTCTTT
70452538 TTTTC-TCTTCTCCTTTCCTTTTCTTT
1 TTTTCTTCTTCTCCTTT-CTTTTCTTT
** * * * *
70452564 CCTTCTTTTTCTTTCTTTCCTCTCATTT
1 TTTTCTTCTTC-TCCTTTCTTTTC-TTT
* * *
70452592 CTTTCTTTTTCT-CTCTC-TTTCTTT
1 TTTTCTTCTTCTCCTTTCTTTTCTTT
* * *
70452616 CTTTTTTTATTCTCTTTTCCTTTTC--T
1 -TTTTCTTCTTCTCCTTT-CTTTTCTTT
* *
70452642 TCTTCTTCTT-T-CTTTCTTTT-TTC
1 TTTTCTTCTTCTCCTTTCTTTTCTTT
* * *
70452665 TCTTCTCCTT-TCCTTTTCTTTCCTTCT
1 TTTTCTTCTTCTCC-TTTCTTTTCTT-T
* *
70452692 TTTTCTTTCTT-TCCTCTCCTTTCTTT
1 TTTTC-TTCTTCTCCTTTCTTTTCTTT
70452718 CTTTT-TCTCTT-T-CTTTC-TTTCTTT
1 -TTTTCT-TCTTCTCCTTTCTTTTCTTT
*
70452742 CTTTC
1 TTTTC
70452747 CCTCTCCTTC
Statistics
Matches: 160, Mismatches: 30, Indels: 39
0.70 0.13 0.17
Matches are distributed among these distances:
22 5 0.03
23 16 0.10
24 22 0.14
25 36 0.22
26 26 0.16
27 26 0.16
28 29 0.18
ACGTcount: A:0.01, C:0.29, G:0.00, T:0.71
Consensus pattern (26 bp):
TTTTCTTCTTCTCCTTTCTTTTCTTT
Found at i:70452548 original size:61 final size:61
Alignment explanation
Indices: 70452468--70452747 Score: 267
Period size: 61 Copynumber: 4.6 Consensus size: 61
70452458 TTCTCTTCTC
*
70452468 CTTTCCTTTTCTTTC-CTTCTTTCTTTCTTTT-TTATTC-TCTTTTCCTTTTCTTCTTCTTCTTT
1 CTTT-CTTTT-TTTCTCTTCTTTCTTTCTTTTCTT-TCCTTCTTTTCC-TTTCTTCTTCTTCTTT
* * * *
70452530 TTTTCTTTTTTTCTCTTC-TCCTTTCCTTTTCTTTCCTTCTTTTTCTTTCTT-TCCTCTCATTT
1 CTTTCTTTTTTTCTCTTCTTTCTTT-CTTTTCTTTCCTTCTTTTCCTTTCTTCTTCT-TC-TTT
* **
70452592 CTTTCTTTTTCTCTC-TCTTTCTTTCTTTT-TTTATTCTCTTTTCCTTTTCTTCTTCTTCTTT
1 CTTTCTTTTTTTCTCTTCTTTCTTTCTTTTCTTTCCT-TCTTTTCC-TTTCTTCTTCTTCTTT
* * * *
70452653 CTTTC-TTTTTTCTCTTC-TCCTTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCCTCTCCTTT
1 CTTTCTTTTTTTCTCTTCTTTCTTT-CTTTTCTTTCCTTCTTTTCCTTTC-TTCTTCTTCTTT
*
70452714 CTTTCTTTTTCTCT-TTCTTTCTTTC-TTTCTTTCC
1 CTTTCTTTTTTTCTCTTCTTTCTTTCTTTTCTTTCC
70452748 CTCTCCTTCT
Statistics
Matches: 181, Mismatches: 21, Indels: 34
0.77 0.09 0.14
Matches are distributed among these distances:
60 42 0.23
61 79 0.44
62 57 0.31
63 3 0.02
ACGTcount: A:0.01, C:0.29, G:0.00, T:0.70
Consensus pattern (61 bp):
CTTTCTTTTTTTCTCTTCTTTCTTTCTTTTCTTTCCTTCTTTTCCTTTCTTCTTCTTCTTT
Found at i:70452553 original size:38 final size:38
Alignment explanation
Indices: 70452440--70452743 Score: 200
Period size: 38 Copynumber: 7.7 Consensus size: 38
70452430 CTTCATTCCC
* * *
70452440 TCTTCTTCTACTTTTTTT-TTCTCTTCTCCTT-TCCTTT
1 TCTTCTTCTTCTTTTTTTCTTTTTTTCT-CTTCTCCTTT
* * *
70452477 TCTT-TCCTTCTTTCTTTCTTTTTTATTCTCTTTTCCTTT
1 TCTTCTTCTTCTTTTTTTC-TTTTT-TTCTCTTCTCCTTT
70452516 TCTTCTTCTTCTTTTTTTCTTTTTTTCTCTTCTCCTTT
1 TCTTCTTCTTCTTTTTTTCTTTTTTTCTCTTCTCCTTT
*
70452554 CCTT-TTCTTTCCTTCTTTTTCTTTCTTTCCTCTCATT-T-C-TT
1 TCTTCTTC-TT-CTT-TTTTTCTTT-TTT--TCTC-TTCTCCTTT
* *
70452595 TCTTTTTCTCTCTCTTTCTTTCTTTTTTTATTCTCTTTTCCTTT
1 TCTTCTTCT-TCT-TTT-TTTC--TTTTT-TTCTCTTCTCCTTT
*
70452639 TCTTCTTCTTCTTTCTTTC-TTTTTTCTCTTCTCCTTT
1 TCTTCTTCTTCTTTTTTTCTTTTTTTCTCTTCTCCTTT
* *
70452676 CCTT-TTCTTTCCTTCTTTTTCTTTCTTTC-C-TCTCC-TT
1 TCTTCTTC-TT-CTT-TTTTTCTTTTTTTCTCTTCTCCTTT
* *
70452713 TCTTTCTTTTTCTCTTTCTTTCTTTCTTTCT
1 TC-TTCTTCTTCT-TTT-TTTCTTTTTTTCT
70452744 TTCCCTCTCC
Statistics
Matches: 218, Mismatches: 18, Indels: 60
0.74 0.06 0.20
Matches are distributed among these distances:
36 13 0.06
37 32 0.15
38 53 0.24
39 30 0.14
40 27 0.12
41 19 0.09
42 17 0.08
43 11 0.05
44 16 0.07
ACGTcount: A:0.01, C:0.29, G:0.00, T:0.70
Consensus pattern (38 bp):
TCTTCTTCTTCTTTTTTTCTTTTTTTCTCTTCTCCTTT
Found at i:70452691 original size:122 final size:123
Alignment explanation
Indices: 70452485--70452741 Score: 473
Period size: 122 Copynumber: 2.1 Consensus size: 123
70452475 TTTCTTTCCT
*
70452485 TCTTTCTTTC-TTTTTTATTCTCTTTTCCTTTTCTTCTTCTTCTTTTTTTCTTTTTTTCTCTTCT
1 TCTTTCTTTCTTTTTTTATTCTCTTTTCCTTTTCTTCTTCTTCTTTCTTTCTTTTTTTCTCTTCT
70452549 CCTTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCCTCTCATTTCTTTCTTTTTCTCTC
66 CCTTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCCTCTCATTTCTTTCTTTTTCTCTC
70452607 TCTTTCTTTCTTTTTTTATTCTCTTTTCCTTTTCTTCTTCTTCTTTCTTTC-TTTTTTCTCTTCT
1 TCTTTCTTTCTTTTTTTATTCTCTTTTCCTTTTCTTCTTCTTCTTTCTTTCTTTTTTTCTCTTCT
* *
70452671 CCTTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCCTCTCCTTTCTTTCTTTTTCTCTT
66 CCTTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCCTCTCATTTCTTTCTTTTTCTCTC
70452729 TCTTTCTTTCTTT
1 TCTTTCTTTCTTT
70452742 CTTTCCCTCT
Statistics
Matches: 131, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
122 92 0.70
123 39 0.30
ACGTcount: A:0.01, C:0.28, G:0.00, T:0.71
Consensus pattern (123 bp):
TCTTTCTTTCTTTTTTTATTCTCTTTTCCTTTTCTTCTTCTTCTTTCTTTCTTTTTTTCTCTTCT
CCTTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCCTCTCATTTCTTTCTTTTTCTCTC
Found at i:70452757 original size:18 final size:17
Alignment explanation
Indices: 70452475--70452746 Score: 152
Period size: 16 Copynumber: 16.2 Consensus size: 17
70452465 CTCCTTTCCT
*
70452475 TTTCTTTCCTTCTT-TC
1 TTTCTTTCTTTCTTCTC
*
70452491 TTTCTTT-TTTATTCTC
1 TTTCTTTCTTTCTTCTC
*
70452507 -TT-TTCCTTTTCTTCT-
1 TTTCTTTC-TTTCTTCTC
70452522 TCTTC-TT-TTT-TTCT-
1 T-TTCTTTCTTTCTTCTC
70452536 TTT-TTTC--TCTTCTCC
1 TTTCTTTCTTTCTTCT-C
*
70452551 TTTCCTTTTCTTTCCTTCTT
1 TTT-C-TTTCTTT-CTTCTC
*
70452571 TTTCTTTCTTTCCTCTC
1 TTTCTTTCTTTCTTCTC
70452588 ATTTCTTTCTTT-TTCTC
1 -TTTCTTTCTTTCTTCTC
* *
70452605 TCTCTTTCTTTCTT-TT
1 TTTCTTTCTTTCTTCTC
* *
70452621 TTTATTCTCTTT-TCCT-
1 TTTCTT-TCTTTCTTCTC
70452637 TTTC-TTC-TTCTTCTTTC
1 TTTCTTTCTTTCTTC--TC
*
70452654 TTTCTTTTTTCTCTTCTCC
1 TTTCTTTCTT-TCTTCT-C
*
70452673 TTTCCTTTTCTTTCCTTCTT
1 TTT-C-TTTCTTT-CTTCTC
*
70452693 TTTCTTTCTTTCCTCTCC
1 TTTCTTTCTTTCTTCT-C
70452711 TTTCTTTCTTT-TTCTC
1 TTTCTTTCTTTCTTCTC
70452727 TTTCTTTCTTTCTT-TC
1 TTTCTTTCTTTCTTCTC
70452743 TTTC
1 TTTC
70452747 CCTCTCCTTC
Statistics
Matches: 200, Mismatches: 22, Indels: 68
0.69 0.08 0.23
Matches are distributed among these distances:
12 1 0.00
13 10 0.05
14 11 0.05
15 13 0.06
16 54 0.27
17 32 0.16
18 43 0.22
19 7 0.04
20 14 0.07
21 15 0.08
ACGTcount: A:0.01, C:0.28, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTCTTTCTTTCTTCTC
Found at i:70452820 original size:27 final size:26
Alignment explanation
Indices: 70452790--70452858 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 26
70452780 TATTATCAAC
*
70452790 TGGTGCCGCCAATGGTATTGGCACCAT
1 TGGTGCCGCCAATGCT-TTGGCACCAT
*
70452817 TGGTGCCGCCAATAGCTTTGGCACCTT
1 TGGTGCCGCCAAT-GCTTTGGCACCAT
70452844 TGGTGCCGCCAATGC
1 TGGTGCCGCCAATGC
70452859 CATTAGTGTG
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
26 2 0.05
27 35 0.90
28 2 0.05
ACGTcount: A:0.16, C:0.29, G:0.29, T:0.26
Consensus pattern (26 bp):
TGGTGCCGCCAATGCTTTGGCACCAT
Found at i:70452952 original size:25 final size:27
Alignment explanation
Indices: 70452923--70452980 Score: 84
Period size: 28 Copynumber: 2.2 Consensus size: 27
70452913 TTTTGTTTTT
70452923 TTATATA-TTTTGATAAAT-AAAAAAA
1 TTATATATTTTTGATAAATAAAAAAAA
*
70452948 TTATATATTTTTTGGTAAATAAAAAAAA
1 TTATATA-TTTTTGATAAATAAAAAAAA
70452976 TTATA
1 TTATA
70452981 ACATTTTCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 7 0.24
27 10 0.34
28 12 0.41
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (27 bp):
TTATATATTTTTGATAAATAAAAAAAA
Found at i:70452966 original size:27 final size:28
Alignment explanation
Indices: 70452924--70452980 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 28
70452914 TTTGTTTTTT
70452924 TATATATTTTGATAAAT-AAAAAAATTA
1 TATATATTTTGATAAATAAAAAAAATTA
* *
70452951 TATATTTTTTGGTAAATAAAAAAAATTA
1 TATATATTTTGATAAATAAAAAAAATTA
70452979 TA
1 TA
70452981 ACATTTTCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 15 0.56
28 12 0.44
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (28 bp):
TATATATTTTGATAAATAAAAAAAATTA
Found at i:70452987 original size:27 final size:27
Alignment explanation
Indices: 70452924--70452992 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
70452914 TTTGTTTTTT
*
70452924 TATATATTTTGATAAATAAAAAAATTA
1 TATACATTTTGATAAATAAAAAAATTA
** *
70452951 TATATTTTTTGGTAAATAAAAAAAATTA
1 TATACATTTTGATAAAT-AAAAAAATTA
*
70452979 TA-ACATTTTCATAA
1 TATACATTTTGATAA
70452993 TTTTTTATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.66
28 12 0.34
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.42
Consensus pattern (27 bp):
TATACATTTTGATAAATAAAAAAATTA
Found at i:70456573 original size:14 final size:16
Alignment explanation
Indices: 70456539--70456575 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
70456529 TACTCTATCT
70456539 TATTTTAGTAAATTTA
1 TATTTTAGTAAATTTA
*
70456555 TATTTTAGT-TATTTA
1 TATTTTAGTAAATTTA
70456570 -ATTTTA
1 TATTTTA
70456576 AATTTTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 6 0.30
15 5 0.25
16 9 0.45
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (16 bp):
TATTTTAGTAAATTTA
Found at i:70468548 original size:13 final size:13
Alignment explanation
Indices: 70468532--70468584 Score: 52
Period size: 13 Copynumber: 4.1 Consensus size: 13
70468522 TTTAAATCAA
70468532 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
70468545 ACTTCTCAATAGC
1 ACTTTTCAAAAGC
*** *
70468558 ACTTTTCCTCAGT
1 ACTTTTCAAAAGC
70468571 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
70468584 A
1 A
70468585 ATGAAGAACT
Statistics
Matches: 29, Mismatches: 11, Indels: 0
0.73 0.28 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.34
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:70473996 original size:2 final size:2
Alignment explanation
Indices: 70473991--70474023 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
70473981 CAAACAGCCT
70473991 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
70474024 TATATATACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:70474151 original size:3 final size:3
Alignment explanation
Indices: 70474145--70474177 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
70474135 CTTCTTCCCT
70474145 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
70474178 TTCCTCTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
ATC
Found at i:70504254 original size:13 final size:13
Alignment explanation
Indices: 70504236--70504278 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
70504226 GGACTTAGAC
70504236 TTTTATTTTTGGT
1 TTTTATTTTTGGT
*
70504249 TTTTA-TTTTGTT
1 TTTTATTTTTGGT
*
70504261 TATTTATTTTTAGT
1 T-TTTATTTTTGGT
70504275 TTTT
1 TTTT
70504279 GTTTGGGTCG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
12 7 0.28
13 12 0.48
14 6 0.24
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.79
Consensus pattern (13 bp):
TTTTATTTTTGGT
Found at i:70511633 original size:11 final size:11
Alignment explanation
Indices: 70511611--70511643 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
70511601 TTATAATTTA
70511611 AATAATATTATT
1 AATAA-ATTATT
70511623 AATAAATTATT
1 AATAAATTATT
70511634 AA-AAATTATT
1 AATAAATTATT
70511644 TATTTTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 8 0.38
11 8 0.38
12 5 0.24
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
AATAAATTATT
Found at i:70511647 original size:28 final size:26
Alignment explanation
Indices: 70511616--70511679 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 26
70511606 ATTTAAATAA
70511616 TATTATTAATAAATTATTAAAAATT-ATT
1 TATT-TTAATAAATTATT--AAATTAATT
* *
70511644 TATTTTATATATATTGTTAAATTAATT
1 TATTTTA-ATAAATTATTAAATTAATT
70511671 TATTTTAAT
1 TATTTTAAT
70511680 GTCAAAATCA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
26 7 0.22
27 13 0.41
28 12 0.38
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (26 bp):
TATTTTAATAAATTATTAAATTAATT
Found at i:70519353 original size:3 final size:3
Alignment explanation
Indices: 70519345--70519406 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
70519335 TAATAACAAT
70519345 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
70519393 GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GA
70519407 GGAGGAGGAG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:70522329 original size:19 final size:19
Alignment explanation
Indices: 70522282--70522344 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
70522272 CGAACAAAAA
*
70522282 TTATAAAATAAACAAAATAAT
1 TTATAAAA-AATCAAAAT-AT
*
70522303 TT-TCAAAAATTCAAAATAT
1 TTAT-AAAAAATCAAAATAT
70522322 TTATAAAAAATCAAAA-AT
1 TTATAAAAAATCAAAATAT
70522340 TTATA
1 TTATA
70522345 TTTTTAAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
18 7 0.19
19 15 0.41
20 9 0.24
21 6 0.16
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.33
Consensus pattern (19 bp):
TTATAAAAAATCAAAATAT
Found at i:70522366 original size:10 final size:9
Alignment explanation
Indices: 70522351--70522402 Score: 61
Period size: 10 Copynumber: 5.6 Consensus size: 9
70522341 TATATTTTTA
70522351 AAAAAAATT
1 AAAAAAATT
70522360 CAAAAAAATT
1 -AAAAAAATT
*
70522370 ATAAAAAAAT
1 A-AAAAAATT
70522380 ATAAAAAATT
1 A-AAAAAATT
70522390 -AAAAAATT
1 AAAAAAATT
70522398 AAAAA
1 AAAAA
70522403 TTTTCTAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
8 8 0.21
9 5 0.13
10 25 0.66
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (9 bp):
AAAAAAATT
Found at i:70522404 original size:7 final size:8
Alignment explanation
Indices: 70522373--70522402 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
70522363 AAAAATTATA
70522373 AAAAAATAT
1 AAAAAAT-T
70522382 AAAAAATT
1 AAAAAATT
70522390 AAAAAATT
1 AAAAAATT
70522398 AAAAA
1 AAAAA
70522403 TTTTCTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 14 0.67
9 7 0.33
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (8 bp):
AAAAAATT
Found at i:70532653 original size:7 final size:7
Alignment explanation
Indices: 70532641--70532665 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
70532631 GTTTTACTAT
70532641 AAAAATA
1 AAAAATA
70532648 AAAAATA
1 AAAAATA
70532655 AAAAATA
1 AAAAATA
70532662 AAAA
1 AAAA
70532666 TAATTTGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:70536723 original size:15 final size:15
Alignment explanation
Indices: 70536703--70536732 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
70536693 TGCCTGCGCC
70536703 TAGTTATCGCCATCT
1 TAGTTATCGCCATCT
70536718 TAGTTATCGCCATCT
1 TAGTTATCGCCATCT
70536733 CTGATTGGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.27, G:0.13, T:0.40
Consensus pattern (15 bp):
TAGTTATCGCCATCT
Found at i:70537466 original size:29 final size:29
Alignment explanation
Indices: 70537424--70537482 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
70537414 CCATACACAT
70537424 TCTTTATTCATCTTGAATCAGCATTGTGA
1 TCTTTATTCATCTTGAATCAGCATTGTGA
70537453 TCTTTATTCATCTTGAATCAGCATTGTGA
1 TCTTTATTCATCTTGAATCAGCATTGTGA
70537482 T
1 T
70537483 AGAATATATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.24, C:0.17, G:0.14, T:0.46
Consensus pattern (29 bp):
TCTTTATTCATCTTGAATCAGCATTGTGA
Found at i:70543171 original size:20 final size:20
Alignment explanation
Indices: 70543148--70543185 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
70543138 CTCTTATTAT
70543148 ATTT-AAAAAATATATATTTA
1 ATTTGAAAAAATAT-TATTTA
70543168 ATTTGAAAAAATATTATT
1 ATTTGAAAAAATATTATT
70543186 GATATGCGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (20 bp):
ATTTGAAAAAATATTATTTA
Found at i:70558169 original size:14 final size:14
Alignment explanation
Indices: 70558150--70558177 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
70558140 GAGGAGGAGC
70558150 AAAGGAAGAAAACA
1 AAAGGAAGAAAACA
70558164 AAAGGAAGAAAACA
1 AAAGGAAGAAAACA
70558178 GAGAGCACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.07, G:0.21, T:0.00
Consensus pattern (14 bp):
AAAGGAAGAAAACA
Found at i:70566556 original size:22 final size:22
Alignment explanation
Indices: 70566531--70566606 Score: 64
Period size: 22 Copynumber: 3.2 Consensus size: 22
70566521 AAAAGTAATG
70566531 TAATTAATTTTTAAAAAATATT
1 TAATTAATTTTTAAAAAATATT
**
70566553 TAATTAATTTAGAATAAATTATATT
1 TAATTAATTTTTAA-AAA--ATATT
70566578 ACTATATTTAATTTTT-AAAAATATT
1 --TA-A-TTAATTTTTAAAAAATATT
70566603 TAAT
1 TAAT
70566607 ATTAGCTTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 15
0.69 0.06 0.24
Matches are distributed among these distances:
21 1 0.02
22 13 0.30
23 5 0.12
25 10 0.23
27 5 0.12
28 2 0.05
29 7 0.16
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (22 bp):
TAATTAATTTTTAAAAAATATT
Found at i:70570582 original size:20 final size:20
Alignment explanation
Indices: 70570557--70570598 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
70570547 AATAATTGAT
* *
70570557 TAATTGGATAATGTTTTGTG
1 TAATTGAATAATATTTTGTG
70570577 TAATTGAATAATATTTTGTG
1 TAATTGAATAATATTTTGTG
70570597 TA
1 TA
70570599 GTTATGATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (20 bp):
TAATTGAATAATATTTTGTG
Found at i:70575589 original size:21 final size:21
Alignment explanation
Indices: 70575563--70575603 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
70575553 AGACGAGCAA
* *
70575563 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
70575584 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
70575604 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:70580819 original size:22 final size:21
Alignment explanation
Indices: 70580794--70580836 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
70580784 TAAGAAAATG
70580794 TAAATATAAATTATAAATTTTT
1 TAAATATAAATTAT-AATTTTT
**
70580816 TAAATATATTTTATAATTTTT
1 TAAATATAAATTATAATTTTT
70580837 AGAATTAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TAAATATAAATTATAATTTTT
Found at i:70581062 original size:42 final size:42
Alignment explanation
Indices: 70581005--70581113 Score: 166
Period size: 42 Copynumber: 2.6 Consensus size: 42
70580995 GTTTACAAAC
* *
70581005 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTT-GTAA
1 AAAAACGCCGCTAAAGACCACGTTCTTTAGCGGCACTTAG-AA
*
70581047 AAAAATGCCGCTAAAGACCACGTTCTTTAGCGGCACTTAGAA
1 AAAAACGCCGCTAAAGACCACGTTCTTTAGCGGCACTTAGAA
*
70581089 AAAAACACCGCTAAAGACCACGTTC
1 AAAAACGCCGCTAAAGACCACGTTC
70581114 CACAGCCATA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
42 60 0.98
43 1 0.02
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGACCACGTTCTTTAGCGGCACTTAGAA
Found at i:70581152 original size:11 final size:11
Alignment explanation
Indices: 70581136--70581175 Score: 73
Period size: 11 Copynumber: 3.7 Consensus size: 11
70581126 GATGATAATA
70581136 CATTAGTTACC
1 CATTAGTTACC
70581147 CATTAGTTACC
1 CATTAGTTACC
70581158 CATTAGTTACC
1 CATTAGTTACC
70581169 CA-TAGTT
1 CATTAGTT
70581176 TGAGATATTC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
10 5 0.17
11 24 0.83
ACGTcount: A:0.28, C:0.25, G:0.10, T:0.38
Consensus pattern (11 bp):
CATTAGTTACC
Found at i:70584624 original size:112 final size:112
Alignment explanation
Indices: 70584249--70585064 Score: 1332
Period size: 112 Copynumber: 7.3 Consensus size: 112
70584239 AACACCTAGA
* *
70584249 TTAGCGGCGCTTTACAACAAAACCCCACTAATT-CCCCCCAAAGGCCACAAAACGGCACCGTCTG
1 TTAGCGGCGCTTTACAA-TAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTG
* *
70584313 GGTGTATTATTTGCGGCATTTTTTATAAATGCTGCTAATGTTCACTCT
65 GGTGTATTATTTGCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCT
* * *
70584361 TTAGCGGTGCTTTACAATAAACGCCACTAATTCCCCCCCCCGAAAGGACACAAAACGGCACTGTC
1 TTAGCGGCGCTTTACAATAAACGCCACTAATT--CCCCCCC-AAAGGCCACAAAACGGCACCGTC
*
70584426 TGGGTGTATTATTTGTGGCGTTTTTTATAAACGCTGCTAATGTTCACTCT
63 TGGGTGTATTATTTGCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCT
*
70584476 TTAGCGACGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
70584541 GTGTATTATTTGCGGC-TTTTTTATAAACGCTGCTAATGTTCACTCT
66 GTGTATTATTTGCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCT
* *
70584587 TTAGCGGCGCTTTACAATAAACACCACTAATTCCCCCCCAAAGGACACAAAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
70584652 GTGTATTATTTGCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCT
66 GTGTATTATTTGCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCT
* *
70584699 TTAGCGACGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGACACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
*
70584764 GTGTATTATTTCCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCT
66 GTGTATTATTTGCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCT
* * * *
70584811 TTAGCGACGCTTTA-AATAAACGCCACTAATTCCCCCCCAGAGGCCACAAAACAGCACTGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
*
70584875 GTGTATTATTTCCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCT
66 GTGTATTATTTGCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCT
* *
70584922 TTAGCGGCGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAATGGCACCGTCTAG
1 TTAGCGGCGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
* * *
70584987 GTGTATTATTTCCGGCGTTTTTTATAAATGCTGCTAATGCTCACTCT
66 GTGTATTATTTGCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCT
* **
70585034 TTAGCGGCGCTTTTCCTTAAACGCCACTAAT
1 TTAGCGGCGCTTTACAATAAACGCCACTAAT
70585065 GCTCACTCTT
Statistics
Matches: 662, Mismatches: 36, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
111 227 0.34
112 324 0.49
113 7 0.01
114 6 0.01
115 98 0.15
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.29
Consensus pattern (112 bp):
TTAGCGGCGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
GTGTATTATTTGCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCT
Found at i:70584708 original size:223 final size:224
Alignment explanation
Indices: 70584249--70585064 Score: 1350
Period size: 223 Copynumber: 3.6 Consensus size: 224
70584239 AACACCTAGA
* * *
70584249 TTAGCGGCGCTTTACAACAAAACCCCACTAATT-CCCCCCAAAGGCCACAAAACGGCACCGTCTG
1 TTAGCGACGCTTTACAA-TAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTG
* * * *
70584313 GGTGTATTATTTGCGGCATTTTTTATAAATGCTGCTAATGTTCACTCTTTAGCGGTGCTTTACAA
65 GGTGTATTATTTCCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTTACAA
*
70584378 TAAACGCCACTAATTCCCCCCCCCGAAAGGACACAAAACGGCACTGTCTGGGTGTATTATTTGTG
130 TAAACGCCACTAATT--CCCCCCC-AAAGGACACAAAACGGCACTGTCTGGGTGTATTATTTGCG
70584443 GCGTTTTTTATAAACGCTGCTAATGTTCACTCT
192 GCGTTTTTTATAAACGCTGCTAATGTTCACTCT
70584476 TTAGCGACGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
1 TTAGCGACGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
*
70584541 GTGTATTATTTGCGGC-TTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTTACAAT
66 GTGTATTATTTCCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTTACAAT
* *
70584605 AAACACCACTAATTCCCCCCCAAAGGACACAAAACGGCACCGTCTGGGTGTATTATTTGCGGCGT
131 AAACGCCACTAATTCCCCCCCAAAGGACACAAAACGGCACTGTCTGGGTGTATTATTTGCGGCGT
70584670 TTTTTATAAACGCTGCTAATGTTCACTCT
196 TTTTTATAAACGCTGCTAATGTTCACTCT
*
70584699 TTAGCGACGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGACACCGTCTGG
1 TTAGCGACGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
*
70584764 GTGTATTATTTCCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGACGCTTTA-AAT
66 GTGTATTATTTCCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTTACAAT
* * * *
70584828 AAACGCCACTAATTCCCCCCCAGAGGCCACAAAACAGCACTGTCTGGGTGTATTATTTCCGGCGT
131 AAACGCCACTAATTCCCCCCCAAAGGACACAAAACGGCACTGTCTGGGTGTATTATTTGCGGCGT
70584893 TTTTTATAAACGCTGCTAATGTTCACTCT
196 TTTTTATAAACGCTGCTAATGTTCACTCT
* * *
70584922 TTAGCGGCGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAATGGCACCGTCTAG
1 TTAGCGACGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
* * * **
70584987 GTGTATTATTTCCGGCGTTTTTTATAAATGCTGCTAATGCTCACTCTTTAGCGGCGCTTTTCCTT
66 GTGTATTATTTCCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTTACAAT
70585052 AAACGCCACTAAT
131 AAACGCCACTAAT
70585065 GCTCACTCTT
Statistics
Matches: 559, Mismatches: 27, Indels: 9
0.94 0.05 0.02
Matches are distributed among these distances:
223 359 0.64
224 64 0.11
226 72 0.13
227 64 0.11
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.29
Consensus pattern (224 bp):
TTAGCGACGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
GTGTATTATTTCCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTTACAAT
AAACGCCACTAATTCCCCCCCAAAGGACACAAAACGGCACTGTCTGGGTGTATTATTTGCGGCGT
TTTTTATAAACGCTGCTAATGTTCACTCT
Done.