Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 234 of 240
Found at i:70585042 original size:39 final size:40
Alignment explanation
Indices: 70585019--70585144 Score: 198
Period size: 40 Copynumber: 3.1 Consensus size: 40
70585009 TATAAATGCT
70585019 GCTAATGCTCACTCTTTAGCGGCGCTTTTCCTTAAACGCC
1 GCTAATGCTCACTCTTTAGCGGCGCTTTTCCTTAAACGCC
*
70585059 ACTAATGCTCACTCTTTAGCGGCGCTTTTCCTTAAACGCC
1 GCTAATGCTCACTCTTTAGCGGCGCTTTTCCTTAAACGCC
* * * *
70585099 GCTAATGCTCACTCTTTAGCAGCGTTTTTGCTCCAAACGCC
1 GCTAATGCTCACTCTTTAGCGGCGCTTTTCCT-TAAACGCC
70585140 GCTAA
1 GCTAA
70585145 AAGTGCCGCT
Statistics
Matches: 79, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
40 67 0.85
41 12 0.15
ACGTcount: A:0.20, C:0.32, G:0.17, T:0.32
Consensus pattern (40 bp):
GCTAATGCTCACTCTTTAGCGGCGCTTTTCCTTAAACGCC
Found at i:70586849 original size:14 final size:15
Alignment explanation
Indices: 70586830--70586859 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
70586820 CTTAATTTTT
70586830 TAATATT-TATGTTA
1 TAATATTATATGTTA
70586844 TAATATTATATGTTA
1 TAATATTATATGTTA
70586859 T
1 T
70586860 TATGGATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.57
Consensus pattern (15 bp):
TAATATTATATGTTA
Found at i:70596730 original size:12 final size:13
Alignment explanation
Indices: 70596702--70596734 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
70596692 AATGAATTAT
*
70596702 ATAAAATAAATGA
1 ATAAAATAAAGGA
70596715 ATAAAA-AAAGGA
1 ATAAAATAAAGGA
70596727 ATAAAATA
1 ATAAAATA
70596735 TAGCACGCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.73, C:0.00, G:0.09, T:0.18
Consensus pattern (13 bp):
ATAAAATAAAGGA
Found at i:70604390 original size:18 final size:18
Alignment explanation
Indices: 70604367--70604455 Score: 115
Period size: 18 Copynumber: 4.9 Consensus size: 18
70604357 CGTTTATGGT
*
70604367 ACTATTCACGTATACGGC
1 ACTATTCACGTATACAGC
* *
70604385 ACTATTCACGTATATAGT
1 ACTATTCACGTATACAGC
70604403 ACTATTCACGTATACAGC
1 ACTATTCACGTATACAGC
* * *
70604421 ACTATTCACATATACGGT
1 ACTATTCACGTATACAGC
*
70604439 ACTGTTCACGTATACAG
1 ACTATTCACGTATACAG
70604456 TAGTTGGGAT
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 60 1.00
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.31
Consensus pattern (18 bp):
ACTATTCACGTATACAGC
Found at i:70604412 original size:36 final size:36
Alignment explanation
Indices: 70604365--70604455 Score: 137
Period size: 36 Copynumber: 2.5 Consensus size: 36
70604355 ACCGTTTATG
* * *
70604365 GTACTATTCACGTATACGGCACTATTCACGTATATA
1 GTACTATTCACGTATACAGCACTATTCACATATACA
*
70604401 GTACTATTCACGTATACAGCACTATTCACATATACG
1 GTACTATTCACGTATACAGCACTATTCACATATACA
*
70604437 GTACTGTTCACGTATACAG
1 GTACTATTCACGTATACAG
70604456 TAGTTGGGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 50 1.00
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (36 bp):
GTACTATTCACGTATACAGCACTATTCACATATACA
Found at i:70610599 original size:17 final size:15
Alignment explanation
Indices: 70610569--70610605 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
70610559 TTGAATAGTA
70610569 ATATTAATATATTAT
1 ATATTAATATATTAT
*
70610584 ATATTAA-ATAATAT
1 ATATTAATATATTAT
70610598 -TATTAATA
1 ATATTAATA
70610606 AATTCTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 6 0.30
14 7 0.35
15 7 0.35
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
ATATTAATATATTAT
Found at i:70610626 original size:28 final size:26
Alignment explanation
Indices: 70610595--70610658 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 26
70610585 TATTAAATAA
70610595 TATTATTAATAAATTCTTAAAAGTT-ATT
1 TATT-TTAATAAATTCTT-AAA-TTAATT
* *
70610623 TATTTTATATATATTGTTAAATTAATT
1 TATTTTA-ATAAATTCTTAAATTAATT
70610650 TATTTTAAT
1 TATTTTAAT
70610659 GTCAAAATCA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
26 4 0.12
27 16 0.50
28 12 0.38
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (26 bp):
TATTTTAATAAATTCTTAAATTAATT
Found at i:70618339 original size:3 final size:3
Alignment explanation
Indices: 70618331--70618385 Score: 58
Period size: 3 Copynumber: 18.7 Consensus size: 3
70618321 TAATAACAAT
* * * *
70618331 GAA GAA GAA GAA GAT GAA GAA GAT GAA GAT GAA GAA GAA AAA GAA -AA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
*
70618378 GGA GAA GA
1 GAA GAA GA
70618386 GACTGTAAAA
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.62, C:0.00, G:0.33, T:0.05
Consensus pattern (3 bp):
GAA
Found at i:70618349 original size:15 final size:15
Alignment explanation
Indices: 70618329--70618374 Score: 74
Period size: 15 Copynumber: 3.1 Consensus size: 15
70618319 CTTAATAACA
70618329 ATGAAGAAGAAGAAG
1 ATGAAGAAGAAGAAG
*
70618344 ATGAAGAAGATGAAG
1 ATGAAGAAGAAGAAG
*
70618359 ATGAAGAAGAAAAAG
1 ATGAAGAAGAAGAAG
70618374 A
1 A
70618375 AAAGGAGAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.61, C:0.00, G:0.30, T:0.09
Consensus pattern (15 bp):
ATGAAGAAGAAGAAG
Found at i:70624132 original size:3 final size:3
Alignment explanation
Indices: 70624124--70624185 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
70624114 TAATAACAAT
70624124 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
70624172 GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GA
70624186 GGAGGAGGAG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:70633685 original size:37 final size:37
Alignment explanation
Indices: 70633633--70633704 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
70633623 AGTTTGAGTC
*
70633633 TTTAATTATGACATAAAT-TGAACAACATTAATATGAG
1 TTTAATTAAGACAT-AATCTGAACAACATTAATATGAG
* *
70633670 TTTAATTAAGTCATAATCTGAACATCATTAATATG
1 TTTAATTAAGACATAATCTGAACAACATTAATATG
70633705 TGTCTTTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
36 3 0.10
37 28 0.90
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.38
Consensus pattern (37 bp):
TTTAATTAAGACATAATCTGAACAACATTAATATGAG
Found at i:70643281 original size:20 final size:20
Alignment explanation
Indices: 70643258--70643299 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
70643248 AAATTTTAGT
*
70643258 TTTGATGTT-TATATTTCAAA
1 TTTGATATTATATATTT-AAA
70643278 TTTGATATTATATATTTAAA
1 TTTGATATTATATATTTAAA
70643298 TT
1 TT
70643300 CTTACTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.57
Consensus pattern (20 bp):
TTTGATATTATATATTTAAA
Found at i:70655552 original size:25 final size:24
Alignment explanation
Indices: 70655519--70655566 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
70655509 ATATGAAATA
*
70655519 TAAATTTAACTATTATATAAATAAT
1 TAAAGTTAACTATT-TATAAATAAT
* *
70655544 TAAAGTTAATTATTTATGAATAA
1 TAAAGTTAACTATTTATAAATAA
70655567 GTAATATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (24 bp):
TAAAGTTAACTATTTATAAATAAT
Found at i:70666662 original size:27 final size:27
Alignment explanation
Indices: 70666632--70666683 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
70666622 AAAAAACAGG
*
70666632 AAAGTTTAAAGAATATAAAAGAAAATA
1 AAAGTTTAAAGAACATAAAAGAAAATA
70666659 AAAGTTTAAAGAACATAAAAGAAAA
1 AAAGTTTAAAGAACATAAAAGAAAA
70666684 AAATTAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.67, C:0.02, G:0.12, T:0.19
Consensus pattern (27 bp):
AAAGTTTAAAGAACATAAAAGAAAATA
Found at i:70673737 original size:21 final size:20
Alignment explanation
Indices: 70673713--70673759 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 20
70673703 TGTTGCTTCA
*
70673713 TCTCCATCA-CTTGCAATTACT
1 TCTCCATCATCTTACAA-T-CT
70673734 TCTCTCATCATCTTACAATCT
1 TCTC-CATCATCTTACAATCT
70673755 TCTCC
1 TCTCC
70673760 TTATTAAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
20 1 0.04
21 10 0.43
22 6 0.26
23 6 0.26
ACGTcount: A:0.21, C:0.36, G:0.02, T:0.40
Consensus pattern (20 bp):
TCTCCATCATCTTACAATCT
Found at i:70673739 original size:23 final size:24
Alignment explanation
Indices: 70673708--70673752 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
70673698 TGATATGTTG
*
70673708 CTTCATCTCCATCA-CTTGCAATTA
1 CTTCATCT-CATCATCTTACAATTA
70673732 CTTC-TCTCATCATCTTACAAT
1 CTTCATCTCATCATCTTACAAT
70673753 CTTCTCCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 5 0.26
23 10 0.53
24 4 0.21
ACGTcount: A:0.24, C:0.33, G:0.02, T:0.40
Consensus pattern (24 bp):
CTTCATCTCATCATCTTACAATTA
Found at i:70696943 original size:4 final size:4
Alignment explanation
Indices: 70696934--70696994 Score: 56
Period size: 4 Copynumber: 15.0 Consensus size: 4
70696924 GGCAACCCAA
*
70696934 TATT TATT TATT TATTT TATTT TCTT TACTT TATT TA-T TACTT TATT
1 TATT TATT TATT TA-TT TA-TT TATT TA-TT TATT TATT TA-TT TATT
70696981 T-TT TA-T TATT TATT
1 TATT TATT TATT TATT
70696995 ACTTATTTGG
Statistics
Matches: 49, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
3 9 0.18
4 25 0.51
5 15 0.31
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:70696989 original size:18 final size:19
Alignment explanation
Indices: 70696936--70696990 Score: 60
Period size: 18 Copynumber: 2.9 Consensus size: 19
70696926 CAACCCAATA
*
70696936 TTTATTTATTTATT-TTAT
1 TTTATTTATTTATTATTAC
*
70696954 TTTCTTTACTTTATTTATTAC
1 TTTATTTA-TTTA-TTATTAC
70696975 TTTATTT-TTTATTATT
1 TTTATTTATTTATTATT
70696991 TATTACTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
18 12 0.39
19 8 0.26
20 2 0.06
21 9 0.29
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTATTTATTTATTATTAC
Found at i:70696992 original size:22 final size:24
Alignment explanation
Indices: 70696937--70697002 Score: 75
Period size: 22 Copynumber: 2.8 Consensus size: 24
70696927 AACCCAATAT
*
70696937 TTATTTATTTATTTTATTTTCTTTAC
1 TTATTTA-TTACTTTA-TTTCTTTAC
70696963 TTTATTTATTACTTTATTT-TTTA-
1 -TTATTTATTACTTTATTTCTTTAC
70696986 TTATTTATTAC-TTATTT
1 TTATTTATTACTTTATTT
70697003 GGATATTAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
21 6 0.16
22 11 0.29
24 4 0.11
25 3 0.08
26 7 0.18
27 7 0.18
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (24 bp):
TTATTTATTACTTTATTTCTTTAC
Found at i:70697009 original size:22 final size:22
Alignment explanation
Indices: 70696964--70697010 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
70696954 TTTCTTTACT
**
70696964 TTATTTATTACTTTATTTTTTA
1 TTATTTATTACTTTATTTGATA
70696986 TTATTTATTAC-TTATTTGGATA
1 TTATTTATTACTTTATTT-GATA
70697008 TTA
1 TTA
70697011 ATAAATTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.66
Consensus pattern (22 bp):
TTATTTATTACTTTATTTGATA
Found at i:70697942 original size:17 final size:16
Alignment explanation
Indices: 70697920--70697974 Score: 60
Period size: 15 Copynumber: 3.4 Consensus size: 16
70697910 AAGCGTAAAG
70697920 AATATAAATAATAAATA
1 AATATAAATAA-AAATA
*
70697937 AATATAAATCAAAATA
1 AATATAAATAAAAATA
*
70697953 AATA-AAA-AAGAAAAA
1 AATATAAATAA-AAATA
70697968 AATATAA
1 AATATAA
70697975 TTTAGGGACT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
14 1 0.03
15 11 0.33
16 11 0.33
17 10 0.30
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.22
Consensus pattern (16 bp):
AATATAAATAAAAATA
Found at i:70698547 original size:15 final size:15
Alignment explanation
Indices: 70698522--70698556 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
70698512 AACTCTATTT
*
70698522 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
70698536 TAATTAATATTAAGA
1 TAATTAATATTAAGA
70698551 TAATTA
1 TAATTA
70698557 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:70705285 original size:21 final size:21
Alignment explanation
Indices: 70705253--70705293 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
70705243 GAACATTTGG
70705253 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
70705274 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
70705294 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:70718552 original size:17 final size:18
Alignment explanation
Indices: 70718522--70718567 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
70718512 ATTTAAATTG
70718522 CGGTCGCGGTCGCGTTTT
1 CGGTCGCGGTCGCGTTTT
70718540 CGGTCGC-GTCGCG-TTT
1 CGGTCGCGGTCGCGTTTT
70718556 --GTCGCGGTCGCG
1 CGGTCGCGGTCGCG
70718568 GACATAACGG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
16 3 0.11
17 6 0.22
18 7 0.26
ACGTcount: A:0.00, C:0.30, G:0.41, T:0.28
Consensus pattern (18 bp):
CGGTCGCGGTCGCGTTTT
Found at i:70720356 original size:14 final size:14
Alignment explanation
Indices: 70720318--70720360 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
70720308 TAAAATGTAC
70720318 AATATAATTAAA-T
1 AATATAATTAAATT
70720331 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
70720346 AA-ATAATTTAATT
1 AATATAATTAAATT
70720359 AA
1 AA
70720361 CTGTTTACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:70723967 original size:16 final size:16
Alignment explanation
Indices: 70723946--70723980 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
70723936 ATTTCAAGTC
70723946 TTACAGCCTATTAATT
1 TTACAGCCTATTAATT
70723962 TTACAGCCTATTAATT
1 TTACAGCCTATTAATT
70723978 TTA
1 TTA
70723981 GTCAAAGTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.06, T:0.46
Consensus pattern (16 bp):
TTACAGCCTATTAATT
Found at i:70730862 original size:23 final size:24
Alignment explanation
Indices: 70730835--70730883 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
70730825 AATAATATTG
70730835 TTTTTAT-TTTAGTCACTCTAATT
1 TTTTTATATTTAGTCACTCTAATT
70730858 TTTTTATCAATTTAGTCACTCTAATT
1 TTTTTAT--ATTTAGTCACTCTAATT
70730884 AATATAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 7 0.30
26 16 0.70
ACGTcount: A:0.24, C:0.14, G:0.04, T:0.57
Consensus pattern (24 bp):
TTTTTATATTTAGTCACTCTAATT
Found at i:70742882 original size:36 final size:36
Alignment explanation
Indices: 70742839--70742910 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
70742829 CCAAATACGC
70742839 CACCTACCTCCACTACACCTATCCCATCACATTCAA
1 CACCTACCTCCACTACACCTATCCCATCACATTCAA
* * *
70742875 CACCTACCTCCACTACACCTTTTCCATCCCATTCAA
1 CACCTACCTCCACTACACCTATCCCATCACATTCAA
70742911 TGTCTCACTC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.28, C:0.47, G:0.00, T:0.25
Consensus pattern (36 bp):
CACCTACCTCCACTACACCTATCCCATCACATTCAA
Found at i:70748142 original size:4 final size:4
Alignment explanation
Indices: 70748135--70748187 Score: 106
Period size: 4 Copynumber: 13.2 Consensus size: 4
70748125 AAAAAAAAAT
70748135 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
70748183 TGTA T
1 TGTA T
70748188 CATTTTGCTG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 49 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.51
Consensus pattern (4 bp):
TGTA
Found at i:70748329 original size:4 final size:4
Alignment explanation
Indices: 70748322--70748361 Score: 80
Period size: 4 Copynumber: 10.0 Consensus size: 4
70748312 AAAAAAAAAT
70748322 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
70748362 ACATGCGACG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TGTA
Found at i:70748337 original size:187 final size:188
Alignment explanation
Indices: 70748007--70748361 Score: 703
Period size: 187 Copynumber: 1.9 Consensus size: 188
70747997 AGAGGCCTTT
70748007 CTGATCATTTTGCTACCATGGCCCCAATCTAAGATCAAAACACCCAAAAGCCTTCCAAAAATCGA
1 CTGATCATTTTGCTACCATGGCCCCAATCTAAGATCAAAACACCCAAAAGCCTTCCAAAAATCGA
70748072 AAAAAAAGTCAAAGGAACTCTTTGGTTCCGTCTTCTCCGATCACAAAATAGGTAAAAAAAAATTG
66 AAAAAAAGTCAAAGGAACTCTTTGGTTCCGTCTTCTCCGATCACAAAATAGGTAAAAAAAAATTG
70748137 TATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATCATTTTG
131 TATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATCATTTTG
70748195 CTGATCATTTTGCTACCATGGCCCCAATCTAAGATCAAAACACCCAAAAGCCTTCCAAAAATCG-
1 CTGATCATTTTGCTACCATGGCCCCAATCTAAGATCAAAACACCCAAAAGCCTTCCAAAAATCGA
70748259 AAAAAAAGTCAAAGGAACTCTTTGGTTCCGTCTTCTCCGATCACAAAATAGGTAAAAAAAAATTG
66 AAAAAAAGTCAAAGGAACTCTTTGGTTCCGTCTTCTCCGATCACAAAATAGGTAAAAAAAAATTG
70748324 TATGTATGTATGTATGTATGTATGTATGTATGTATGTA
131 TATGTATGTATGTATGTATGTATGTATGTATGTATGTA
70748362 ACATGCGACG
Statistics
Matches: 167, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
187 103 0.62
188 64 0.38
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.31
Consensus pattern (188 bp):
CTGATCATTTTGCTACCATGGCCCCAATCTAAGATCAAAACACCCAAAAGCCTTCCAAAAATCGA
AAAAAAAGTCAAAGGAACTCTTTGGTTCCGTCTTCTCCGATCACAAAATAGGTAAAAAAAAATTG
TATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATCATTTTG
Found at i:70749063 original size:44 final size:45
Alignment explanation
Indices: 70749014--70749429 Score: 204
Period size: 44 Copynumber: 9.1 Consensus size: 45
70749004 CTTCAAAGGT
*
70749014 ATAAGAATTACT-GCTTTAATCTGCTCCACTGCAACTTTAGGGAG
1 ATAAGAATTACTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAG
* * *
70749058 ATAAG-ATTAGTAGCTTCAATCTGCTCCACTGCAACTTCAGAGAG
1 ATAAGAATTACTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAG
* * * * * *
70749102 ATGAGATTTGCTATGGTATATTTAATCTGAC-CTACTGCATCTTCAGAGGTGTAGG
1 ATAAGAATTACTA--G---CTTTAATCTG-CTCCACTGCAACTTC--AGG-G-A-G
* * * * * * *
70749157 ATTTATGACTTA-TAACTTTAATCTACTTCACTGCAACTTCAAGGAA
1 A--TAAGAATTACTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAG
* * * * * *
70749203 ATAAG-ATT-CGCATCTTAAATTTGCTCCACTGTAACTTTAGGGAG
1 ATAAGAATTAC-TAGCTTTAATCTGCTCCACTGCAACTTCAGGGAG
** * *
70749247 ATAAG-ATTTGT-GGTTTCAATCTGCTCCATTGCAACTTCAGGGAG
1 ATAAGAATTACTAGCTTT-AATCTGCTCCACTGCAACTTCAGGGAG
* * * * * * * *
70749291 ATAAGACTTA-TAGCTTTAATATACTCTACTACAATTTCAGAGAA
1 ATAAGAATTACTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAG
* * * * * * *
70749335 ATAAGATTTCCTATCTTCAATCTGCTCCGCTACAACTTCAGGAAG
1 ATAAGAATTACTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAG
* * * * *
70749380 ATAAG-ATTAGTGGCTTCAATCTGCTCCACTCCAACTTCGGGGAG
1 ATAAGAATTACTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAG
70749424 ATAAGA
1 ATAAGA
70749430 TTCGCCATGG
Statistics
Matches: 270, Mismatches: 78, Indels: 47
0.68 0.20 0.12
Matches are distributed among these distances:
43 9 0.03
44 164 0.61
45 39 0.14
46 1 0.00
47 2 0.01
48 1 0.00
49 2 0.01
50 20 0.07
51 19 0.07
52 2 0.01
53 1 0.00
54 1 0.00
55 2 0.01
56 2 0.01
57 5 0.02
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (45 bp):
ATAAGAATTACTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAG
Found at i:70749387 original size:133 final size:132
Alignment explanation
Indices: 70749163--70749429 Score: 333
Period size: 133 Copynumber: 2.0 Consensus size: 132
70749153 TAGGATTTAT
* * *
70749163 GACTTATAACTTTAATCTACTTCACTGCAACTTCAAGGAAATAAGATTCGCATCTTAAATTTGCT
1 GACTTATAACTTTAATATACTTCACTACAACTTCAAGGAAATAAGATTCGCATCTTAAATCTGCT
** * * * * * *
70749228 CCACTGTAACTTTAGGGAGATAAGATTTGTGGTTTCAATCTGCTCCATTGCAACTTCAGGGAGAT
66 CCACTACAACTTCAGGAAGATAAGATTAGTGGCTTCAATCTGCTCCACTCCAACTTCAGGGAGAT
70749293 AA
131 AA
* * *
70749295 GACTTATAGCTTTAATATAC-TCTACTACAATTTC-AGAGAAATAAGATTTC-CTATCTTCAATC
1 GACTTATAACTTTAATATACTTC-ACTACAACTTCAAG-GAAATAAGA-TTCGC-ATCTTAAATC
* *
70749357 TGCTCCGCTACAACTTCAGGAAGATAAGATTAGTGGCTTCAATCTGCTCCACTCCAACTTCGGGG
62 TGCTCCACTACAACTTCAGGAAGATAAGATTAGTGGCTTCAATCTGCTCCACTCCAACTTCAGGG
70749422 AGATAA
127 AGATAA
70749428 GA
1 GA
70749430 TTCGCCATGG
Statistics
Matches: 115, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
131 4 0.03
132 37 0.32
133 74 0.64
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (132 bp):
GACTTATAACTTTAATATACTTCACTACAACTTCAAGGAAATAAGATTCGCATCTTAAATCTGCT
CCACTACAACTTCAGGAAGATAAGATTAGTGGCTTCAATCTGCTCCACTCCAACTTCAGGGAGAT
AA
Found at i:70749428 original size:89 final size:89
Alignment explanation
Indices: 70749261--70749431 Score: 200
Period size: 89 Copynumber: 1.9 Consensus size: 89
70749251 GATTTGTGGT
* * * * * *
70749261 TTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGACTTATAGCTTTAATATACTCTACTACAAT
1 TTCAATCTGCTCCACTACAACTTCAGGAAGATAAGACTTATAGCTTCAATATACTCCACTACAAC
70749326 TTCAGAGAAATAAGATTTCCTATC
66 TTCAGAGAAATAAGATTTCCTATC
* * * * *
70749350 TTCAATCTGCTCCGCTACAACTTCAGGAAGATAAGA-TTAGTGGCTTCAATCTGCTCCACTCCAA
1 TTCAATCTGCTCCACTACAACTTCAGGAAGATAAGACTTA-TAGCTTCAATATACTCCACTACAA
* * *
70749414 CTTCGGGGAGATAAGATT
65 CTTCAGAGAAATAAGATT
70749432 CGCCATGGTA
Statistics
Matches: 67, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
88 3 0.04
89 64 0.96
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (89 bp):
TTCAATCTGCTCCACTACAACTTCAGGAAGATAAGACTTATAGCTTCAATATACTCCACTACAAC
TTCAGAGAAATAAGATTTCCTATC
Found at i:70749577 original size:45 final size:44
Alignment explanation
Indices: 70749513--70749613 Score: 114
Period size: 44 Copynumber: 2.3 Consensus size: 44
70749503 ATTCCACTAC
* * **
70749513 AACTTCAGGGAAATAAGATTCGCT-ATCTTCAATCTGCTCTGCTGT
1 AACTTCAGGGAGATAAGATTAG-TGAT-TTCAATCTGCTCCACTGT
* * *
70749558 AACTTTAGGGAGATGAGATTAGTGATTTCATTCTGCTCCACTGT
1 AACTTCAGGGAGATAAGATTAGTGATTTCAATCTGCTCCACTGT
70749602 AACTTCAGGGAG
1 AACTTCAGGGAG
70749614 TAAAATTTGC
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
44 27 0.57
45 20 0.43
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.33
Consensus pattern (44 bp):
AACTTCAGGGAGATAAGATTAGTGATTTCAATCTGCTCCACTGT
Found at i:70754311 original size:21 final size:21
Alignment explanation
Indices: 70754285--70754325 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
70754275 AGACGAGCAA
* *
70754285 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
70754306 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
70754326 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:70763273 original size:6 final size:6
Alignment explanation
Indices: 70763262--70763318 Score: 61
Period size: 6 Copynumber: 10.3 Consensus size: 6
70763252 TCATGTTTTG
*
70763262 AATATT AATATT AATATT AATATT AATA-T ATTA-T AAT-TT AA-A-T
1 AATATT AATATT AATATT AATATT AATATT AATATT AATATT AATATT
*
70763305 AATATT ATTATT AA
1 AATATT AATATT AA
70763319 ATTCTTACAA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
4 3 0.07
5 11 0.26
6 29 0.67
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (6 bp):
AATATT
Found at i:70783627 original size:20 final size:21
Alignment explanation
Indices: 70783602--70783650 Score: 64
Period size: 23 Copynumber: 2.3 Consensus size: 21
70783592 TTTTAAACAA
70783602 CTTTATACTC-TTCCAAATTT
1 CTTTATACTCTTTCCAAATTT
*
70783622 CTTTATTCTCATTTTCCAAATTT
1 CTTTATACTC--TTTCCAAATTT
70783645 CTTTAT
1 CTTTAT
70783651 TCTCATTGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 9 0.36
23 16 0.64
ACGTcount: A:0.22, C:0.22, G:0.00, T:0.55
Consensus pattern (21 bp):
CTTTATACTCTTTCCAAATTT
Found at i:70783640 original size:23 final size:23
Alignment explanation
Indices: 70783612--70783657 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
70783602 CTTTATACTC
70783612 TTCCAAATTTCTTTATTCTCATT
1 TTCCAAATTTCTTTATTCTCATT
70783635 TTCCAAATTTCTTTATTCTCATT
1 TTCCAAATTTCTTTATTCTCATT
70783658 GTATTTCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.22, G:0.00, T:0.57
Consensus pattern (23 bp):
TTCCAAATTTCTTTATTCTCATT
Found at i:70783665 original size:19 final size:20
Alignment explanation
Indices: 70783617--70783668 Score: 61
Period size: 23 Copynumber: 2.5 Consensus size: 20
70783607 TACTCTTCCA
*
70783617 AATTTCTTTATTCTCATTTT
1 AATTTCTTTATTCTCATTGT
70783637 CCAAATTTCTTTATTCTCATTGT
1 ---AATTTCTTTATTCTCATTGT
70783660 -ATTTCTTTA
1 AATTTCTTTA
70783669 CTTATCACAC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 9 0.32
23 19 0.68
ACGTcount: A:0.21, C:0.17, G:0.02, T:0.60
Consensus pattern (20 bp):
AATTTCTTTATTCTCATTGT
Found at i:70784235 original size:21 final size:21
Alignment explanation
Indices: 70784192--70784360 Score: 94
Period size: 21 Copynumber: 8.1 Consensus size: 21
70784182 GTACGTCGTT
*
70784192 AACAGAAGCTCA-AA-AGCTG
1 AACAGAAGCTCATAAGAGCTA
*
70784211 AACAGAAGCTCGTAAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
* * * * *
70784232 AACAAAAACTCATAAGGGTTG
1 AACAGAAGCTCATAAGAGCTA
* *
70784253 AGCAGAAGCTCATAAGAGCTG
1 AACAGAAGCTCATAAGAGCTA
** * * *
70784274 AATGGAAACTCGTATA-AGTTA
1 AACAGAAGCTCATA-AGAGCTA
* *
70784295 AACAAAAGCTCATAAGAGCTC
1 AACAGAAGCTCATAAGAGCTA
* * *
70784316 AAC-GAAAACTCATATGAGTTA
1 AACAG-AAGCTCATAAGAGCTA
* * *
70784337 AATAGAAGCTCGTAAAAGCTA
1 AACAGAAGCTCATAAGAGCTA
70784358 AAC
1 AAC
70784361 GGAAAGTAAA
Statistics
Matches: 105, Mismatches: 39, Indels: 10
0.68 0.25 0.06
Matches are distributed among these distances:
19 11 0.10
20 3 0.03
21 89 0.85
22 2 0.02
ACGTcount: A:0.46, C:0.17, G:0.20, T:0.18
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTA
Found at i:70784272 original size:42 final size:40
Alignment explanation
Indices: 70784211--70784361 Score: 140
Period size: 42 Copynumber: 3.6 Consensus size: 40
70784201 TCAAAAGCTG
* * *
70784211 AACAGAAGCTCGTAAGAGCTAAACAAAAACTCATAAGGGTTG
1 AACAGAAGCTCATAAGAGCTAAACGAAAACTCATAA--GTTA
* * * *
70784253 AGCAGAAGCTCATAAGAGCTGAATGGAAACTCGTATAAGTTA
1 AACAGAAGCTCATAAGAGCTAAACGAAAACTC--ATAAGTTA
* *
70784295 AACAAAAGCTCATAAGAGCTCAACGAAAACTCATATGAGTTA
1 AACAGAAGCTCATAAGAGCTAAACGAAAACTCATA--AGTTA
* * *
70784337 AATAGAAGCTCGTAAAAGCTAAACG
1 AACAGAAGCTCATAAGAGCTAAACG
70784362 GAAAGTAAAA
Statistics
Matches: 88, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
40 3 0.03
42 81 0.92
44 4 0.05
ACGTcount: A:0.45, C:0.17, G:0.20, T:0.19
Consensus pattern (40 bp):
AACAGAAGCTCATAAGAGCTAAACGAAAACTCATAAGTTA
Found at i:70784297 original size:63 final size:61
Alignment explanation
Indices: 70784194--70784310 Score: 155
Period size: 63 Copynumber: 1.9 Consensus size: 61
70784184 ACGTCGTTAA
*
70784194 CAGAAGCTCAAAAGCTGAACAGAAGCTCGTAAGAGCTAAACAAAAACTCATAAGGGTTGAG
1 CAGAAGCTCAAAAGCTGAACAGAAACTCGTAAGAGCTAAACAAAAACTCATAAGGGTTGAG
** * *
70784255 CAGAAGCTCATAAGAGCTGAATGGAAACTCGTATA-AGTTAAACAAAAGCTCATAAG
1 CAGAAGCTCA-AA-AGCTGAACAGAAACTCGTA-AGAGCTAAACAAAAACTCATAAG
70784311 AGCTCAACGA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
61 10 0.21
62 2 0.04
63 35 0.73
64 1 0.02
ACGTcount: A:0.44, C:0.17, G:0.21, T:0.17
Consensus pattern (61 bp):
CAGAAGCTCAAAAGCTGAACAGAAACTCGTAAGAGCTAAACAAAAACTCATAAGGGTTGAG
Found at i:70784735 original size:17 final size:18
Alignment explanation
Indices: 70784695--70784736 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
70784685 GATCTAAATT
* *
70784695 AATAATTTCATTCAATAT
1 AATAATTTCATACAATAA
*
70784713 ATTAATTT-ATACAATAA
1 AATAATTTCATACAATAA
70784730 AATAATT
1 AATAATT
70784737 CATTTCCTGC
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (18 bp):
AATAATTTCATACAATAA
Found at i:70789495 original size:15 final size:16
Alignment explanation
Indices: 70789475--70789504 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70789465 AATCATTAAG
70789475 TCTCC-ATAATTATCT
1 TCTCCAATAATTATCT
70789490 TCTCCAATAATTATC
1 TCTCCAATAATTATC
70789505 ATTTTTACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.27, G:0.00, T:0.43
Consensus pattern (16 bp):
TCTCCAATAATTATCT
Found at i:70789690 original size:15 final size:16
Alignment explanation
Indices: 70789670--70789699 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70789660 AATCATTAAG
70789670 TCTCC-ATAATTATCT
1 TCTCCAATAATTATCT
70789685 TCTCCAATAATTATC
1 TCTCCAATAATTATC
70789700 ATTTTTACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.27, G:0.00, T:0.43
Consensus pattern (16 bp):
TCTCCAATAATTATCT
Found at i:70789743 original size:195 final size:195
Alignment explanation
Indices: 70789411--70790199 Score: 1578
Period size: 195 Copynumber: 4.0 Consensus size: 195
70789401 TCTTTTAAAA
70789411 TAATCATTTACACTTTGACCCTCCAATCATGTTTTGCCAGCAATTTTAACCCTTAATCATTAAGT
1 TAATCATTTACACTTTGACCCTCCAATCATGTTTTGCCAGCAATTTTAACCCTTAATCATTAAGT
70789476 CTCCATAATTATCTTCTCCAATAATTATCATTTTTACCCCTCCACTTTTCTACAATTTCATGGAT
66 CTCCATAATTATCTTCTCCAATAATTATCATTTTTACCCCTCCACTTTTCTACAATTTCATGGAT
70789541 GATTCATCTTTTCTTTTGGTAAATTTCCTCCTCTAGTCTCTTCTCCTTTTTGTTTCAATTTCATT
131 GATTCATCTTTTCTTTTGGTAAATTTCCTCCTCTAGTCTCTTCTCCTTTTTGTTTCAATTTCATT
70789606 TAATCATTTACACTTTGACCCTCCAATCATGTTTTGCCAGCAATTTTAACCCTTAATCATTAAGT
1 TAATCATTTACACTTTGACCCTCCAATCATGTTTTGCCAGCAATTTTAACCCTTAATCATTAAGT
70789671 CTCCATAATTATCTTCTCCAATAATTATCATTTTTACCCCTCCACTTTTCTACAATTTCATGGAT
66 CTCCATAATTATCTTCTCCAATAATTATCATTTTTACCCCTCCACTTTTCTACAATTTCATGGAT
70789736 GATTCATCTTTTCTTTTGGTAAATTTCCTCCTCTAGTCTCTTCTCCTTTTTGTTTCAATTTCATT
131 GATTCATCTTTTCTTTTGGTAAATTTCCTCCTCTAGTCTCTTCTCCTTTTTGTTTCAATTTCATT
70789801 TAATCATTTACACTTTGACCCTCCAATCATGTTTTGCCAGCAATTTTAACCCTTAATCATTAAGT
1 TAATCATTTACACTTTGACCCTCCAATCATGTTTTGCCAGCAATTTTAACCCTTAATCATTAAGT
70789866 CTCCATAATTATCTTCTCCAATAATTATCATTTTTACCCCTCCACTTTTCTACAATTTCATGGAT
66 CTCCATAATTATCTTCTCCAATAATTATCATTTTTACCCCTCCACTTTTCTACAATTTCATGGAT
70789931 GATTCATCTTTTCTTTTGGTAAATTTCCTCCTCTAGTCTCTTCTCCTTTTTGTTTCAATTTCATT
131 GATTCATCTTTTCTTTTGGTAAATTTCCTCCTCTAGTCTCTTCTCCTTTTTGTTTCAATTTCATT
70789996 TAATCATTTACACTTTGACCCTCCAATCATGTTTTGCCAGCAATTTTAACCCTTAATCATTAAGT
1 TAATCATTTACACTTTGACCCTCCAATCATGTTTTGCCAGCAATTTTAACCCTTAATCATTAAGT
70790061 CTCCATAATTATCTTCTCCAATAATTATCATTTTTACCCCTCCACTTTTCTACAATTTCATGGAT
66 CTCCATAATTATCTTCTCCAATAATTATCATTTTTACCCCTCCACTTTTCTACAATTTCATGGAT
70790126 GATTCATCTTTTCTTTTGGTAAATTTCCTCCTCTAGTCTCTTCTCCTTTTTGTTTCAATTTCATT
131 GATTCATCTTTTCTTTTGGTAAATTTCCTCCTCTAGTCTCTTCTCCTTTTTGTTTCAATTTCATT
70790191 TAATCATTT
1 TAATCATTT
70790200 TAACTTTAAA
Statistics
Matches: 594, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
195 594 1.00
ACGTcount: A:0.23, C:0.25, G:0.06, T:0.46
Consensus pattern (195 bp):
TAATCATTTACACTTTGACCCTCCAATCATGTTTTGCCAGCAATTTTAACCCTTAATCATTAAGT
CTCCATAATTATCTTCTCCAATAATTATCATTTTTACCCCTCCACTTTTCTACAATTTCATGGAT
GATTCATCTTTTCTTTTGGTAAATTTCCTCCTCTAGTCTCTTCTCCTTTTTGTTTCAATTTCATT
Found at i:70789885 original size:15 final size:16
Alignment explanation
Indices: 70789865--70789894 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70789855 AATCATTAAG
70789865 TCTCC-ATAATTATCT
1 TCTCCAATAATTATCT
70789880 TCTCCAATAATTATC
1 TCTCCAATAATTATC
70789895 ATTTTTACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.27, G:0.00, T:0.43
Consensus pattern (16 bp):
TCTCCAATAATTATCT
Found at i:70790080 original size:15 final size:16
Alignment explanation
Indices: 70790060--70790089 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70790050 AATCATTAAG
70790060 TCTCC-ATAATTATCT
1 TCTCCAATAATTATCT
70790075 TCTCCAATAATTATC
1 TCTCCAATAATTATC
70790090 ATTTTTACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.27, G:0.00, T:0.43
Consensus pattern (16 bp):
TCTCCAATAATTATCT
Found at i:70793397 original size:18 final size:19
Alignment explanation
Indices: 70793364--70793401 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
70793354 AGACTCCAGG
*
70793364 TCTGATTCTTTTCAATCAT
1 TCTGATTCTCTTCAATCAT
70793383 TCTGATT-TCTTCAATCAT
1 TCTGATTCTCTTCAATCAT
70793401 T
1 T
70793402 GCTTGCTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.21, C:0.21, G:0.05, T:0.53
Consensus pattern (19 bp):
TCTGATTCTCTTCAATCAT
Found at i:70799868 original size:29 final size:28
Alignment explanation
Indices: 70799826--70799883 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
70799816 CGTATTTTTG
* **
70799826 TATTTTAAAAATTTAATCTTTCTACTTT
1 TATTTGAAAAATTTAATCCGTCTACTTT
*
70799854 TATTTGAAAGAATTTAGTCCGTCTACTTT
1 TATTTGAAA-AATTTAATCCGTCTACTTT
70799883 T
1 T
70799884 CTAATTTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
28 8 0.32
29 17 0.68
ACGTcount: A:0.29, C:0.12, G:0.07, T:0.52
Consensus pattern (28 bp):
TATTTGAAAAATTTAATCCGTCTACTTT
Found at i:70804693 original size:98 final size:98
Alignment explanation
Indices: 70804524--70804720 Score: 367
Period size: 98 Copynumber: 2.0 Consensus size: 98
70804514 ATACAATAAA
*
70804524 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
70804589 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
*
70804622 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
*
70804687 CCTTTAGAATCTCAAACTCGGAATATTTCCTTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
70804720 A
1 A
70804721 TTGTTTTTAA
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 96 1.00
ACGTcount: A:0.37, C:0.24, G:0.11, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
Found at i:70805265 original size:21 final size:21
Alignment explanation
Indices: 70805241--70805296 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
70805231 GAGAATAAAG
*
70805241 AAAAATATATATAGAAATTAT
1 AAAAATATATATAGAAAGTAT
***
70805262 AAAAATATGGGTAGAAAGTAT
1 AAAAATATATATAGAAAGTAT
*
70805283 AATATATATATATA
1 AA-AAATATATATA
70805297 TACGTACATA
Statistics
Matches: 26, Mismatches: 8, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
21 19 0.73
22 7 0.27
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.32
Consensus pattern (21 bp):
AAAAATATATATAGAAAGTAT
Found at i:70805394 original size:17 final size:17
Alignment explanation
Indices: 70805374--70805408 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
70805364 AAGGAAAGAA
70805374 AGAAAAAAAATATTTTG
1 AGAAAAAAAATATTTTG
70805391 AGAAAAAAAATATTTTG
1 AGAAAAAAAATATTTTG
70805408 A
1 A
70805409 AATTAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.11, T:0.29
Consensus pattern (17 bp):
AGAAAAAAAATATTTTG
Found at i:70806939 original size:132 final size:132
Alignment explanation
Indices: 70806770--70807066 Score: 542
Period size: 132 Copynumber: 2.2 Consensus size: 132
70806760 TTCAATCTAT
*
70806770 TCCACTAATGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAAG-GAAG
1 TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGT-CAAGAGAAG
*
70806834 TAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
65 TAGAATTACTGGCTTCAATGTACTCCACTATAACCACAAGGAGGTAAAATCCGCCATCTTCGATC
70806899 TGC
130 TGC
* *
70806902 TCCACTACTGTTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCTAGAGAAGT
1 TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCAAGAGAAGT
70806967 AGAATTACTGGCTTCAATGTACTCCACTATAACCACAAGGAGGTAAAATCCGCCATCTTCGATCT
66 AGAATTACTGGCTTCAATGTACTCCACTATAACCACAAGGAGGTAAAATCCGCCATCTTCGATCT
70807032 GC
131 GC
70807034 TCCACTACTGCTTAGGGAGATAAGATCTGAAAT
1 TCCACTACTGCTTAGGGAGATAAGATCTGAAAT
70807067 AAGCAGTAAA
Statistics
Matches: 159, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
131 3 0.02
132 156 0.98
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.29
Consensus pattern (132 bp):
TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCAAGAGAAGT
AGAATTACTGGCTTCAATGTACTCCACTATAACCACAAGGAGGTAAAATCCGCCATCTTCGATCT
GC
Found at i:70807203 original size:155 final size:155
Alignment explanation
Indices: 70806921--70807221 Score: 557
Period size: 155 Copynumber: 1.9 Consensus size: 155
70806911 GTTTAGGGAG
* *
70806921 ATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCTAGAGAAGTAGAATTACTGGCTTCAATG
1 ATAAGATCTGAAATCTTCAATCTATTCCACAGTTGTCCAGAGAAGTAGAATTACTGGCTTCAATG
70806986 TACTCCACTATAACCACAAGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGG
66 TACTCCACTATAACCACAAGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGG
70807051 AGATAAGATCTGAAATAAGCAGTAA
131 AGATAAGATCTGAAATAAGCAGTAA
*
70807076 ATAAGATCTGAAATCTTCAATCTATTCCACAGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATG
1 ATAAGATCTGAAATCTTCAATCTATTCCACAGTTGTCCAGAGAAGTAGAATTACTGGCTTCAATG
**
70807141 TACTCCACTATAACCACGGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGG
66 TACTCCACTATAACCACAAGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGG
70807206 AGATAAGATCTGAAAT
131 AGATAAGATCTGAAAT
70807222 CTTCAATCTA
Statistics
Matches: 141, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
155 141 1.00
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (155 bp):
ATAAGATCTGAAATCTTCAATCTATTCCACAGTTGTCCAGAGAAGTAGAATTACTGGCTTCAATG
TACTCCACTATAACCACAAGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGG
AGATAAGATCTGAAATAAGCAGTAA
Found at i:70807311 original size:287 final size:287
Alignment explanation
Indices: 70806789--70807321 Score: 958
Period size: 287 Copynumber: 1.9 Consensus size: 287
70806779 GCTTAGGGAG
*
70806789 ATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAAGGAAGTAGAATTACTGGCTTCAATG
1 ATAAGATCTGAAATCTTCAATCTATTCCACAGTTGTCCAAGGAAGTAGAATTACTGGCTTCAATG
*
70806854 TACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGTTTAGGG
66 TACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGG
* *
70806919 AGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCTAGAGAAGTAGAATTACTGGCTTCAA
131 AGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGAGAAGTAGAATTACTGGCTTCAA
*
70806984 TGTACTCCACTATAACCACAAGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAG
196 TGTACTCCACTATAACCAAAAGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAG
70807049 GGAGATAAGATCTGAAATAAGCAGTAA
261 GGAGATAAGATCTGAAATAAGCAGTAA
*
70807076 ATAAGATCTGAAATCTTCAATCTATTCCACAGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATG
1 ATAAGATCTGAAATCTTCAATCTATTCCACAGTTGTCCAAGGAAGTAGAATTACTGGCTTCAATG
*
70807141 TACTCCACTATAACCACGGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGG
66 TACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGG
* *
70807206 AGATAAGATCTGAAATCTTCAATCTATTCTACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAA
131 AGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGAGAAGTAGAATTACTGGCTTCAA
* * *
70807271 TGTACTCCACTATAACCAAAAGGAGGTAAAATCTGCCATCTTTGATTTGCT
196 TGTACTCCACTATAACCAAAAGGAGGTAAAATCCGCCATCTTCGATCTGCT
70807322 TCGCCATCAA
Statistics
Matches: 234, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
287 234 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (287 bp):
ATAAGATCTGAAATCTTCAATCTATTCCACAGTTGTCCAAGGAAGTAGAATTACTGGCTTCAATG
TACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGG
AGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGAGAAGTAGAATTACTGGCTTCAA
TGTACTCCACTATAACCAAAAGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAG
GGAGATAAGATCTGAAATAAGCAGTAA
Found at i:70808701 original size:5 final size:5
Alignment explanation
Indices: 70808667--70808699 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
70808657 TCACTTTCAA
70808667 TTTTG TTTTG TTTTG TTTTG TTTTG TTTT- TTTT
1 TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTT
70808700 TTGAATCTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (5 bp):
TTTTG
Found at i:70812326 original size:98 final size:98
Alignment explanation
Indices: 70812157--70812353 Score: 367
Period size: 98 Copynumber: 2.0 Consensus size: 98
70812147 ATACAATAAA
*
70812157 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
70812222 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
*
70812255 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
*
70812320 CCTTTAGAATCTCAAACTCGGAATATTTCCTTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
70812353 A
1 A
70812354 TTGTTTTTAA
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 96 1.00
ACGTcount: A:0.37, C:0.24, G:0.11, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
Found at i:70812895 original size:21 final size:21
Alignment explanation
Indices: 70812871--70812926 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
70812861 GAGAATAAAG
*
70812871 AAAAATATATATAGAAATTAT
1 AAAAATATATATAGAAAGTAT
***
70812892 AAAAATATGGGTAGAAAGTAT
1 AAAAATATATATAGAAAGTAT
*
70812913 AATATATATATATA
1 AA-AAATATATATA
70812927 CGTACATATA
Statistics
Matches: 26, Mismatches: 8, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
21 19 0.73
22 7 0.27
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.32
Consensus pattern (21 bp):
AAAAATATATATAGAAAGTAT
Found at i:70820409 original size:24 final size:27
Alignment explanation
Indices: 70820350--70820411 Score: 85
Period size: 24 Copynumber: 2.4 Consensus size: 27
70820340 TTGAGCCAGT
*
70820350 ATTCTTTTATTCTTTTTTCGAGTAATT
1 ATTCTTTTATTCTTTTTTCGAGTAATC
*
70820377 ATTCTTTTATTC-TTTTTCTA-T-ATC
1 ATTCTTTTATTCTTTTTTCGAGTAATC
70820401 ATTCTTTTATT
1 ATTCTTTTATT
70820412 TATTTCATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
24 13 0.39
25 1 0.03
26 7 0.21
27 12 0.36
ACGTcount: A:0.18, C:0.13, G:0.03, T:0.66
Consensus pattern (27 bp):
ATTCTTTTATTCTTTTTTCGAGTAATC
Found at i:70820424 original size:23 final size:23
Alignment explanation
Indices: 70820372--70820425 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
70820362 TTTTTTCGAG
* *
70820372 TAATTATTCTTTTATTCTTTTTC
1 TAATCATTCTTTTATTCTATTTC
70820395 TATATCATTCTTTTATT-TATTTC
1 TA-ATCATTCTTTTATTCTATTTC
70820418 ATAATCAT
1 -TAATCAT
70820426 ATTTTGTTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 12 0.44
24 15 0.56
ACGTcount: A:0.24, C:0.13, G:0.00, T:0.63
Consensus pattern (23 bp):
TAATCATTCTTTTATTCTATTTC
Found at i:70825181 original size:44 final size:44
Alignment explanation
Indices: 70825118--70825313 Score: 185
Period size: 44 Copynumber: 4.6 Consensus size: 44
70825108 ACTTCAGTCT
70825118 TATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAATCAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAATCAATCC
* ** * *
70825162 TATCTCCCTGAAGTTGCAGTGGAGC-G-GATTA-ACATCTAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAATC-A-ATCC
** * * * * *
70825205 TATCTTTCTGAGGTTGCAG-AGAGCAGATC----G-TATCCAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-CAAAAGAAAT-CAATCC
70825245 TATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAATCAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAATCAATCC
70825289 TATCTCCCTGAAGTTGCAGTGGAGC
1 TATCTCCCTGAAGTTGCAGTGGAGC
70825314 GGATTAACAT
Statistics
Matches: 120, Mismatches: 19, Indels: 26
0.73 0.12 0.16
Matches are distributed among these distances:
40 20 0.17
41 14 0.12
42 8 0.07
43 21 0.17
44 55 0.46
45 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAATCAATCC
Found at i:70825261 original size:40 final size:41
Alignment explanation
Indices: 70825112--70825391 Score: 167
Period size: 44 Copynumber: 6.6 Consensus size: 41
70825102 AGTGAAACTT
* *
70825112 CAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CAAAAGAAAT-
1 CAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGATC----G-TATC
* * * * ***
70825156 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAACATC
1 CAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGA-TCGTATC
* ** *
70825198 TAGATCTTATCTTTCTGAGGTTGCAG-AGAGCAGATCGTATC
1 CAG-TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCGTATC
* *
70825239 CAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CAAAAGAAAT-
1 CAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGATC----G-TATC
* * * * ***
70825283 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAACATC
1 CAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGA-TCGTATC
** *
70825325 CAGATCTTATCTTTCTGAGGTTGCAG-AGAGCAGATCGTATC
1 CAG-TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCGTATC
70825366 CAGTCTTATCTCCCTGAAGTTGCAGT
1 CAGTCTTATCTCCCTGAAGTTGCAGT
70825392 GGAACAGACT
Statistics
Matches: 179, Mismatches: 42, Indels: 33
0.70 0.17 0.13
Matches are distributed among these distances:
40 39 0.22
41 24 0.13
42 15 0.08
43 36 0.20
44 63 0.35
45 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (41 bp):
CAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCGTATC
Found at i:70825338 original size:127 final size:127
Alignment explanation
Indices: 70825112--70825400 Score: 560
Period size: 127 Copynumber: 2.3 Consensus size: 127
70825102 AGTGAAACTT
70825112 CAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAATCAATCCTATCTCCCTGAAGTT
1 CAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAATCAATCCTATCTCCCTGAAGTT
*
70825177 GCAGTGGAGCGGATTAACATCTAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCGTATC
66 GCAGTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCGTATC
70825239 CAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAATCAATCCTATCTCCCTGAAGTT
1 CAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAATCAATCCTATCTCCCTGAAGTT
70825304 GCAGTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCGTATC
66 GCAGTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCGTATC
*
70825366 CAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGAC
1 CAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
70825401 TAAATATAGT
Statistics
Matches: 160, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
127 160 1.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (127 bp):
CAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAATCAATCCTATCTCCCTGAAGTT
GCAGTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCGTATC
Found at i:70826910 original size:18 final size:17
Alignment explanation
Indices: 70826880--70826918 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
70826870 TACATGGTTT
*
70826880 TTTTATATACATATATA
1 TTTTATATACATATACA
*
70826897 TTTTATAATTCATATACA
1 TTTTAT-ATACATATACA
70826915 TTTT
1 TTTT
70826919 CCTTATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTTATATACATATACA
Found at i:70828966 original size:4 final size:4
Alignment explanation
Indices: 70828957--70829068 Score: 215
Period size: 4 Copynumber: 28.0 Consensus size: 4
70828947 TCTTTTTGAA
70828957 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
70829005 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATA TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
70829053 TATG TATG TATG TATG
1 TATG TATG TATG TATG
70829069 CTATATTCAA
Statistics
Matches: 106, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
4 106 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:70829788 original size:44 final size:44
Alignment explanation
Indices: 70829722--70829834 Score: 122
Period size: 44 Copynumber: 2.6 Consensus size: 44
70829712 GTTCTAACCT
* * * *
70829722 ACTGCATCTTCAAAG-GTATAAGAATTACTA-CTTTAATCTGCTCC
1 ACTGCAACTTCAGAGAG-ATAAG-ATTACTAGCTTCAATCTACTCC
* * *
70829766 ACTGCAACTTTAGGGAGATAAGATTAGTAGCTTCAATCTACTCC
1 ACTGCAACTTCAGAGAGATAAGATTACTAGCTTCAATCTACTCC
*
70829810 ACTGCAACTTCAGAGAGATGAGATT
1 ACTGCAACTTCAGAGAGATAAGATT
70829835 TGCTATGGTA
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
43 6 0.11
44 50 0.88
45 1 0.02
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (44 bp):
ACTGCAACTTCAGAGAGATAAGATTACTAGCTTCAATCTACTCC
Found at i:70829976 original size:44 final size:44
Alignment explanation
Indices: 70829901--70830021 Score: 127
Period size: 44 Copynumber: 2.8 Consensus size: 44
70829891 TTATAACTTT
* * * * *
70829901 AATCTACTTCACTGCAACTTCAAGGAAATAAGATTCG-CATCTTC
1 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTCGTCAT-TTC
* * * **
70829945 AATTTGCTCCACTGTAACTTTAGGGAGATAAGATTTGTGGTTTC
1 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTCGTCATTTC
*
70829989 AATCTGCTCCATTGCAACTTTAGGGAGATAAGA
1 AATCTGCTCCACTGCAACTTTAGGGAGATAAGA
70830022 CTTATAGCTT
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
44 62 0.98
45 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTCGTCATTTC
Found at i:70832561 original size:22 final size:22
Alignment explanation
Indices: 70832518--70832561 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
70832508 TGTTTTGAAG
*
70832518 AATTTTAAATATTTTTAAATTT
1 AATTTTAAATATTTATAAATTT
* * *
70832540 AATTTTTAATGTTTATATATTT
1 AATTTTAAATATTTATAAATTT
70832562 TGTTAATTTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
AATTTTAAATATTTATAAATTT
Found at i:70833550 original size:18 final size:19
Alignment explanation
Indices: 70833527--70833564 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
70833517 GGAAGCAAGC
*
70833527 AATGATTGAAGA-AATCAG
1 AATGATTGAAAAGAATCAG
70833545 AATGATTGAAAAGAATCAG
1 AATGATTGAAAAGAATCAG
70833564 A
1 A
70833565 CCTGGAGTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.53, C:0.05, G:0.21, T:0.21
Consensus pattern (19 bp):
AATGATTGAAAAGAATCAG
Found at i:70838752 original size:18 final size:19
Alignment explanation
Indices: 70838719--70838756 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
70838709 AGACTCCAGG
*
70838719 TCTGATTCTTTTCAATCAT
1 TCTGATTCTCTTCAATCAT
70838738 TCTGATT-TCTTCAATCAT
1 TCTGATTCTCTTCAATCAT
70838756 T
1 T
70838757 GCTTGCTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.21, C:0.21, G:0.05, T:0.53
Consensus pattern (19 bp):
TCTGATTCTCTTCAATCAT
Found at i:70844660 original size:29 final size:28
Alignment explanation
Indices: 70844594--70844660 Score: 64
Period size: 29 Copynumber: 2.4 Consensus size: 28
70844584 GTAAGCTTGC
* **
70844594 GTTTTTTTTTATTTTTAAAATTTAATCT
1 GTTTATTTTTATTTGAAAAATTTAATCT
* *
70844622 -TTCTACTTTTATTTGAAGAAATTTAGTCT
1 GTT-TATTTTTATTTGAA-AAATTTAATCT
70844651 GTTTATTTTT
1 GTTTATTTTT
70844661 CTATTTTAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
27 2 0.07
28 10 0.33
29 16 0.53
30 2 0.07
ACGTcount: A:0.24, C:0.06, G:0.07, T:0.63
Consensus pattern (28 bp):
GTTTATTTTTATTTGAAAAATTTAATCT
Found at i:70853697 original size:16 final size:17
Alignment explanation
Indices: 70853671--70853717 Score: 57
Period size: 16 Copynumber: 3.0 Consensus size: 17
70853661 GTTTGAATAT
70853671 TAATATT-AATATATTA
1 TAATATTAAATATATTA
70853687 TAAT-TTAAATA-ATTA
1 TAATATTAAATATATTA
*
70853702 TATTATTAAAT-TATTA
1 TAATATTAAATATATTA
70853718 CAAGTTATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 9 0.33
16 18 0.67
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TAATATTAAATATATTA
Found at i:70891038 original size:114 final size:111
Alignment explanation
Indices: 70890726--70891038 Score: 319
Period size: 113 Copynumber: 2.9 Consensus size: 111
70890716 ATTTCGGGTA
* * *
70890726 TTGGTCTGTCAATGGCCGACACTAGA-ATACGAAAAAAG---TAAAAAAAAA-AT-TGATGGCCT
1 TTGGTCTGTCAATGGCCGACACCA-ATATACGAAAAAAGTTTTAAAAAAAAATTTGTGGTGGCCT
* * *
70890785 GCCAATGGCCGGCACCACCTTTATGGG---AAATTTTTTTTTATTTT
65 GCCAATGGCCGGCACCACCTTTATGGGAAAAAATTTATATATATTTT
* * *
70890829 TTCG--TGTCAATGG-CAAGCACCAATATACGAAAAAAGTTTGAAAAAAAAAATTTTGTGGTGGC
1 TTGGTCTGTCAATGGCCGA-CACCAATATACGAAAAAAGTTT-TAAAAAAAAA-TTTGTGGTGGC
* * * ***
70890891 CTACTAATGGCCAGCACCACCTTT-TTTCAAAAAATATATATATATATTTT
63 CTGCCAATGGCCGGCACCACCTTTATGGGAAAAAAT-T-TATATATATTTT
*
70890941 TTGGTCTGTCAATGGCCGACACCATTATACGAAAAAAGTTTTAAAAAAAAATTTGGTGGTGGCCT
1 TTGGTCTGTCAATGGCCGACACCAATATACGAAAAAAGTTTTAAAAAAAAATTT-GTGGTGGCCT
*
70891006 GCCAATGGTCGGCACCACCTTTATGGGAAAAAA
65 GCCAATGGCCGGCACCACCTTTATGGGAAAAAA
70891039 AATTTACTTT
Statistics
Matches: 165, Mismatches: 26, Indels: 27
0.76 0.12 0.12
Matches are distributed among these distances:
100 3 0.02
101 25 0.15
103 3 0.02
105 9 0.05
107 2 0.01
108 27 0.16
110 4 0.02
111 1 0.01
112 15 0.09
113 37 0.22
114 37 0.22
115 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (111 bp):
TTGGTCTGTCAATGGCCGACACCAATATACGAAAAAAGTTTTAAAAAAAAATTTGTGGTGGCCTG
CCAATGGCCGGCACCACCTTTATGGGAAAAAATTTATATATATTTT
Found at i:70892879 original size:3 final size:3
Alignment explanation
Indices: 70892873--70892908 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
70892863 GAACAACAAC
70892873 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
70892909 GAAAAGATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:70893118 original size:23 final size:22
Alignment explanation
Indices: 70893078--70893121 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
70893068 AAATTATAAA
*
70893078 ATATAAGAATATATATATGTAC
1 ATATAAGAAAATATATATGTAC
70893100 ATATAAGAAAAATATATATGTA
1 ATATAAG-AAAATATATATGTA
70893122 TGTGAATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (22 bp):
ATATAAGAAAATATATATGTAC
Found at i:70893872 original size:23 final size:22
Alignment explanation
Indices: 70893829--70893886 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
70893819 AAAGGGTATC
* *
70893829 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
70893850 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
70893873 TGCATATCATATCT
1 TACAAATCATATCT
70893887 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:70894696 original size:88 final size:88
Alignment explanation
Indices: 70894587--70894872 Score: 253
Period size: 88 Copynumber: 3.2 Consensus size: 88
70894577 TTTCAACTTA
70894587 CTCCACTACTG-TTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACATTGGGAAG
1 CTCCACTACTGCTT-AGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACATTGGGAAG
* *
70894651 ATAAGATTCGCTATCATCGATCTG
65 ATAAGATTCGCAATCTTCGATCTG
* * *** * * * * * *
70894675 CTCCACTATTGCTTAGGGAGATAAGATCT-GTAATTTTTAACCTACTCTACTGCTGCT-CA--AG
1 CTCCACTACTGCTTAGGGAGATAAG-GCTAGT-GGCTTAAATCTGCT-T-C-CCTACTACATTGG
* * * * *
70894736 G-AGATAAG-GTCTACAATCTTCAACCTA
61 GAAGATAAGATTC-GCAATCTTCGATCTG
* * *
70894763 TTCCACTACTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGA
1 CTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACATTGGGAAGA
**
70894828 TAAGATTCGCCGTCTTCGATCTG
66 TAAGATTCGCAATCTTCGATCTG
70894851 CTCCACTACTGCTTAGGGAGAT
1 CTCCACTACTGCTTAGGGAGAT
70894873 CAGATCTGTA
Statistics
Matches: 144, Mismatches: 41, Indels: 26
0.68 0.19 0.12
Matches are distributed among these distances:
84 4 0.03
85 2 0.01
86 1 0.01
87 14 0.10
88 99 0.69
89 16 0.11
90 1 0.01
91 3 0.02
92 4 0.03
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (88 bp):
CTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACATTGGGAAGA
TAAGATTCGCAATCTTCGATCTG
Found at i:70894739 original size:44 final size:44
Alignment explanation
Indices: 70894675--70894787 Score: 118
Period size: 44 Copynumber: 2.6 Consensus size: 44
70894665 CATCGATCTG
* * * ** * *
70894675 CTCCACTATTGCTTAGGGAGATAAGATCTGTAATTTTTAACCTA
1 CTCCACTACTGCTCAAGGAGATAAGATCTACAATCTTCAACCTA
* * *
70894719 CTCTACTGCTGCTCAAGGAGATAAGGTCTACAATCTTCAACCTA
1 CTCCACTACTGCTCAAGGAGATAAGATCTACAATCTTCAACCTA
* *
70894763 TTCCACTACTGCTCAGGGAGATAAG
1 CTCCACTACTGCTCAAGGAGATAAG
70894788 GCTAGTGGCT
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (44 bp):
CTCCACTACTGCTCAAGGAGATAAGATCTACAATCTTCAACCTA
Found at i:70894770 original size:176 final size:176
Alignment explanation
Indices: 70894578--70894945 Score: 594
Period size: 176 Copynumber: 2.1 Consensus size: 176
70894568 ATCTGTAATT
* * *
70894578 TTCAACTTACTCCACTACTGTTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACA
1 TTCAACCTATTCCACTACTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACA
* *
70894643 TTGGGAAGATAAGATTCGCTATCATCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAA
66 TTGGGAAGATAAGATTCGCCATCATCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA
* * *
70894708 TTTTTAACCTACTCTACTGCTGCTCAAGGAGATAAG-GTCTACAATC
131 TTTTCAACCTACTCCACTGCTGCTCAAGGAGATAAGATTC-ACAATC
*
70894754 TTCAACCTATTCCACTACTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACC
1 TTCAACCTATTCCACTACTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACA
* * *
70894819 TTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATCAGATCTGTAA
66 TTGGGAAGATAAGATTCGCCATCATCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA
* *
70894884 TTTTCAACCTACTCCACTGCTGCTCAGGGAGATATGATTCACAATC
131 TTTTCAACCTACTCCACTGCTGCTCAAGGAGATAAGATTCACAATC
70894930 TTCAACCTATTCCACT
1 TTCAACCTATTCCACT
70894946 GCTAACCAGG
Statistics
Matches: 177, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
176 175 0.99
177 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (176 bp):
TTCAACCTATTCCACTACTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACA
TTGGGAAGATAAGATTCGCCATCATCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA
TTTTCAACCTACTCCACTGCTGCTCAAGGAGATAAGATTCACAATC
Found at i:70894917 original size:88 final size:88
Alignment explanation
Indices: 70894649--70894932 Score: 236
Period size: 88 Copynumber: 3.2 Consensus size: 88
70894639 TACATTGGGA
* * * *
70894649 AGATAAGATTCGCTATCATCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAATTTTTA
1 AGATAAGATTCGCAATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTAA
* *
70894714 ACCTACTCTACTGCTGCTCAAGG
66 ACCTACTCCACTGCTGCTCAGGG
* * * * ** * * ***
70894737 AGATAAG-GTCTACAATCTTCAACCTATTCCACTACTGCTCAGGGAGATAAG-GCTAGT-GGCTT
1 AGATAAGATTC-GCAATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-GTAATTTT
* * * * *
70894799 AAATCTGCTTCC-CTACTAC-CTTGGG
64 AAACCTAC-TCCACTGCTGCTC-AGGG
** * *
70894824 AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATCAGATCTGTAATTTTC
1 -AGATAAGATTCGCAATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTA
70894889 AACCTACTCCACTGCTGCTCAGGG
65 AACCTACTCCACTGCTGCTCAGGG
* *
70894913 AGATATGATTCACAATCTTC
1 AGATAAGATTCGCAATCTTC
70894933 AACCTATTCC
Statistics
Matches: 140, Mismatches: 46, Indels: 20
0.68 0.22 0.10
Matches are distributed among these distances:
86 1 0.01
87 18 0.13
88 101 0.72
89 19 0.14
90 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (88 bp):
AGATAAGATTCGCAATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTAA
ACCTACTCCACTGCTGCTCAGGG
Found at i:70894934 original size:44 final size:44
Alignment explanation
Indices: 70894886--70895671 Score: 560
Period size: 44 Copynumber: 18.8 Consensus size: 44
70894876 ATCTGTAATT
* *
70894886 TTCAACCTACTCCACTGCTG-CTCAGGGAGATATGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACAATC
*
70894930 TTCAACCTATTCCACTGCTAACCAGGGAGATAGG-------A--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
*
70894965 TTC-ACCTATTCCACTGCTGACCAGGGAGATAGAACTT-ACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATC
**
70895008 TTCAACCTATTCCACTATTGACCAGGGAGATAGG-------A--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
70895043 TTC-ACCTATTCCACTGCTGACCAGGGAGATAGGACTT-ACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATC
* * * * *
70895086 TTTAACCTATTCCACTGCTAACCAGAGAGATAAGACTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
* ** *
70895130 TTCAACCTATGCCACTATTGACCAGGGAGATAGGACTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
*
70895174 TTCAACCTATTCCACTGCTGACTAGGGAGATAGG-------A--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
* * * *****
70895209 TTC-ACCTATTCCACTGCTGACTAGGAAGATAGGACT-AGTGGA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
* * * * * * * **
70895251 TTAAATCTGCTTCC-CTACT-ACCTTAGGAAGATAAGATTCGCTGTC
1 TTCAACCT-ATTCCACTGCTGACC--AGGGAGATAGGATTCACAATC
* * ** ** * * * ** *
70895296 TTCGATCTGCTCCACTATTG-CTTAGGGAAATAAGA-TCTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATTC-ACAATC
* * *
70895340 TTTAACCTACTCCACTACTG-CTCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACAATC
*
70895384 TTCAACCTATTCCACTGCTGACCAAGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
*
70895428 TTTC-ACCTATTCCACTGCTGATCAGGGAGATAGGACTT-ACAATC
1 -TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATC
* * **
70895472 TTCAACCTATTCCACTACTGACCAAGGAGATAGGACGCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
*
70895516 TTCAACCTATTCCACTGCTGATCAGGGAGATAGG-------A--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
70895551 TTC-ACCTATTCCACTGCTGACCAGGGAGATAGGACTT-ACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATC
* * * *
70895594 TTCAACCTATTCCACTACTGACTAGGGAGATATGACTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
*
70895638 TTTAACCTATTCCACTGCTGACCAGGGAGATAGG
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGG
70895672 GCTTTGTGAT
Statistics
Matches: 601, Mismatches: 85, Indels: 112
0.75 0.11 0.14
Matches are distributed among these distances:
34 114 0.19
35 12 0.02
37 4 0.01
41 3 0.00
42 4 0.01
43 22 0.04
44 420 0.70
45 22 0.04
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (44 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
Found at i:70894977 original size:34 final size:34
Alignment explanation
Indices: 70894934--70895076 Score: 160
Period size: 34 Copynumber: 3.9 Consensus size: 34
70894924 ACAATCTTCA
*
70894934 ACCTATTCCACTGCTAACCAGGGAGATAGGATTC
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
*
70894968 ACCTATTCCACTGCTGACCAGGGAGATAGAACTTACAATCTTC
1 ACCTATTCCACTGCTGACCAGGGAGATAG-------GA--TTC
**
70895011 AACCTATTCCACTATTGACCAGGGAGATAGGATTC
1 -ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
70895046 ACCTATTCCACTGCTGACCAGGGAGATAGGA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA
70895077 CTTACAATCT
Statistics
Matches: 92, Mismatches: 7, Indels: 20
0.77 0.06 0.17
Matches are distributed among these distances:
34 57 0.62
35 3 0.03
37 1 0.01
41 1 0.01
43 3 0.03
44 27 0.29
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (34 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
Found at i:70895019 original size:78 final size:78
Alignment explanation
Indices: 70894890--70895625 Score: 520
Period size: 78 Copynumber: 8.9 Consensus size: 78
70894880 GTAATTTTCA
* * *
70894890 ACCTACTCCACTGCTG-CTCAGGGAGATATGA-TTCACAATCTTCAACCTATTCCACTGCTAACC
1 ACCTATTCCACTGCTGAC-CAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTGCTGACC
70894953 AGGGAGATAGGATTC
64 AGGGAGATAGGATTC
* **
70894968 ACCTATTCCACTGCTGACCAGGGAGATAGAACTTACAATCTTCAACCTATTCCACTATTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAG
70895033 GGAGATAGGATTC
66 GGAGATAGGATTC
* *
70895046 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTTAACCTATTCCACTGCTAACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAG
**
70895111 AGAGATAAGACTCACAATCTTC
66 -G-G---AGA-T-AGGA--TTC
* ** * *
70895133 AACCTATGCCACTATTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGACTA
1 -ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCA
70895198 GGGAGATAGGATTC
65 GGGAGATAGGATTC
* * ***** * * * *
70895212 ACCTATTCCACTGCTGACTAGGAAGATAGGAC-TAGTGGATTAAATCTGCTTCC-CTACT-ACCT
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCT-ATTCCACTGCTGACC-
* *
70895274 TAGGAAGATAAGATTC
64 -AGGGAGATAGGATTC
* * * * * * * * * *
70895290 GCTGTCTTCGATCTGCTCCACTATTGCTTAGGGAAATAAGATCTGT--AATTTTTAACCTACTCC
1 AC-CTATTCCA-CTGCT-GAC-----C--AGGGAGATAGGA-CT-TACAATCTTCAACCTATTCC
*
70895353 ACTACTG-CTCAGGGAGATAGGATTCACAATCTTC
54 ACTGCTGAC-CAGGGAGATAGG-------A--TTC
* *
70895387 AACCTATTCCACTGCTGACCAAGGAGATAGGA-TTCACAATCTTTC-ACCTATTCCACTGCTGAT
1 -ACCTATTCCACTGCTGACCAGGGAGATAGGACTT-ACAATC-TTCAACCTATTCCACTGCTGAC
70895450 CAGGGAGATAGGACTTACAATCTTC
63 CAGGGAGATAGG-------A--TTC
* * ** *
70895475 AACCTATTCCACTACTGACCAAGGAGATAGGACGCACAATCTTCAACCTATTCCACTGCTGATCA
1 -ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCA
70895540 GGGAGATAGGATTC
65 GGGAGATAGGATTC
* *
70895554 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACTAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAG
70895619 GGAGATA
66 GGAGATA
70895626 TGACTCACAA
Statistics
Matches: 526, Mismatches: 84, Indels: 96
0.75 0.12 0.14
Matches are distributed among these distances:
76 2 0.00
77 11 0.02
78 237 0.45
79 15 0.03
80 6 0.01
81 5 0.01
82 1 0.00
83 6 0.01
84 1 0.00
85 3 0.01
86 2 0.00
87 7 0.01
88 195 0.37
89 15 0.03
90 2 0.00
91 1 0.00
95 3 0.01
96 5 0.01
97 8 0.02
98 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (78 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAG
GGAGATAGGATTC
Found at i:70895182 original size:166 final size:166
Alignment explanation
Indices: 70894968--70895671 Score: 720
Period size: 166 Copynumber: 4.2 Consensus size: 166
70894958 GATAGGATTC
* * * *
70894968 ACCTATTCCACTGCTGACCAGGGAGATAGAACTTACAATCTTCAACCTATTCCACTATTGACCAG
1 ACCTATTCCACTACTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTACTGACCAG
70895033 GGAGATAGGATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTTAACCTATTC
66 GGAGATAGGATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTTAACCTATTC
* * *
70895098 CACTGCTAACCAGAGAGATAAGACTCACAATCTTCA
131 CACTACTGACCAGGGAGATAAGACTCACAATCTTCA
* * * *
70895134 ACCTATGCCACTATTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGACTAG
1 ACCTATTCCACTACTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTACTGACCAG
* * ***** * * *
70895199 GGAGATAGGATTCACCTATTCCACTGCTGACTAGGAAGATAGGAC-TAGTGGATTAAATCTGCTT
66 GGAGATAGGATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTTAACCT-ATT
* * * ** *
70895263 CC-CTACT-ACCTTAGGAAGATAAGATTCGCTGTCTTCG
130 CCACTACTGACC--AGGGAGATAAGACTCACAATCTTCA
* ** * * * * ** * * *
70895300 ATCTGCTCCACTATTG-CTTAGGGAAATAAGA-TCTGTAATTTTTAACCTACTCCACTACTG-CT
1 ACCTATTCCACTACTGAC-CAGGGAGATAGGACTC-ACAATCTTCAACCTATTCCACTACTGAC-
*
70895362 CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGA-TTCACAA
63 CAGGGAGATAGG-------A--TTC-ACCTATTCCACTGCTGACCAGGGAGATAGGACTT-ACAA
* * * * *
70895426 TCTTTCACCTATTCCACTGCTGATCAGGGAGATAGGACTTACAATCTTCA
117 TCTTTAACCTATTCCACTACTGACCAGGGAGATAAGACTCACAATCTTCA
* * * *
70895476 ACCTATTCCACTACTGACCAAGGAGATAGGACGCACAATCTTCAACCTATTCCACTGCTGATCAG
1 ACCTATTCCACTACTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTACTGACCAG
*
70895541 GGAGATAGGATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTC
66 GGAGATAGGATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTTAACCTATTC
* * *
70895606 CACTACTGACTAGGGAGATATGACTCACAATCTTTA
131 CACTACTGACCAGGGAGATAAGACTCACAATCTTCA
*
70895642 ACCTATTCCACTGCTGACCAGGGAGATAGG
1 ACCTATTCCACTACTGACCAGGGAGATAGG
70895672 GCTTTGTGAT
Statistics
Matches: 425, Mismatches: 89, Indels: 48
0.76 0.16 0.09
Matches are distributed among these distances:
164 3 0.01
165 16 0.04
166 279 0.66
167 5 0.01
169 1 0.00
173 1 0.00
175 3 0.01
176 103 0.24
177 12 0.03
178 2 0.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (166 bp):
ACCTATTCCACTACTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTACTGACCAG
GGAGATAGGATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTTAACCTATTC
CACTACTGACCAGGGAGATAAGACTCACAATCTTCA
Found at i:70895216 original size:34 final size:34
Alignment explanation
Indices: 70895178--70895242 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
70895168 ACAATCTTCA
*
70895178 ACCTATTCCACTGCTGACTAGGGAGATAGGATTC
1 ACCTATTCCACTGCTGACTAGGAAGATAGGATTC
70895212 ACCTATTCCACTGCTGACTAGGAAGATAGGA
1 ACCTATTCCACTGCTGACTAGGAAGATAGGA
70895243 CTAGTGGATT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (34 bp):
ACCTATTCCACTGCTGACTAGGAAGATAGGATTC
Found at i:70895563 original size:34 final size:34
Alignment explanation
Indices: 70895520--70895584 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
70895510 ACAATCTTCA
*
70895520 ACCTATTCCACTGCTGATCAGGGAGATAGGATTC
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
70895554 ACCTATTCCACTGCTGACCAGGGAGATAGGA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA
70895585 CTTACAATCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (34 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
Found at i:70897925 original size:25 final size:25
Alignment explanation
Indices: 70897872--70897937 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
70897862 AAGAAAATCC
* *
70897872 AAAAGAATGAAAGAATAATTATTCG
1 AAAAGAATGAAAGAATAATTACTCA
*
70897897 AAAAGAATGAAAGAAT-ATTGGCTCA
1 AAAAGAATGAAAGAATAATT-ACTCA
70897922 AAAATGAATGCAAAGA
1 AAAA-GAATG-AAAGA
70897938 TGTATTTCAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 3 0.09
25 22 0.63
26 5 0.14
27 5 0.14
ACGTcount: A:0.56, C:0.06, G:0.18, T:0.20
Consensus pattern (25 bp):
AAAAGAATGAAAGAATAATTACTCA
Found at i:70899249 original size:2 final size:2
Alignment explanation
Indices: 70899244--70899289 Score: 60
Period size: 2 Copynumber: 24.0 Consensus size: 2
70899234 AGAGAGCATT
* *
70899244 TC TC TC TC TC TC TC TC TC TC TC T- TC -C TC TC CC TC TC CC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
70899284 TC TC TC
1 TC TC TC
70899290 GTAACAAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
1 2 0.05
2 36 0.95
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (2 bp):
TC
Found at i:70900215 original size:21 final size:21
Alignment explanation
Indices: 70900190--70900241 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
70900180 GTATATATAT
70900190 ATATCTATATGTTTTTTT-TTC
1 ATATCTATAT-TTTTTTTCTTC
*
70900211 ATATCTATATTTTTTTTCTTT
1 ATATCTATATTTTTTTTCTTC
*
70900232 TTATCTATAT
1 ATATCTATAT
70900242 ATATATATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 7 0.25
21 21 0.75
ACGTcount: A:0.21, C:0.10, G:0.02, T:0.67
Consensus pattern (21 bp):
ATATCTATATTTTTTTTCTTC
Found at i:70904328 original size:3 final size:3
Alignment explanation
Indices: 70904320--70904352 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
70904310 GATCAAGAAC
70904320 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
70904353 GAAAAGATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:70904571 original size:27 final size:26
Alignment explanation
Indices: 70904522--70904572 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
70904512 AAATTATAAA
*
70904522 ATATAAGAATATATATATATATGTAC
1 ATATAAGAAAATATATATATATGTAC
*
70904548 ATATAAGAAAAATATATATGTATGT
1 ATATAAG-AAAATATATATATATGT
70904573 GAATTATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.51, C:0.02, G:0.10, T:0.37
Consensus pattern (26 bp):
ATATAAGAAAATATATATATATGTAC
Found at i:70904585 original size:27 final size:26
Alignment explanation
Indices: 70904522--70904585 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 26
70904512 AAATTATAAA
* *
70904522 ATATAAGAATATATATATATATGTAC
1 ATATAAAAAAATATATATATATGTAC
*
70904548 ATATAAGAAAAATATATATGTATGTGA-
1 ATATAA-AAAAATATATATATATGT-AC
70904575 ATTATAAAAAA
1 A-TATAAAAAA
70904586 TAAAAAAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
26 6 0.19
27 20 0.62
28 6 0.19
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (26 bp):
ATATAAAAAAATATATATATATGTAC
Found at i:70905328 original size:23 final size:22
Alignment explanation
Indices: 70905285--70905342 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
70905275 AAAGGGTATC
* *
70905285 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
70905306 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
70905329 TGCATATCATATCT
1 TACAAATCATATCT
70905343 AATATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:70905973 original size:13 final size:13
Alignment explanation
Indices: 70905954--70906004 Score: 66
Period size: 13 Copynumber: 3.9 Consensus size: 13
70905944 TAAACCAAAT
70905954 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
*
70905967 TTCTCAAAAGCAC
1 TTTTCAAAAGCAC
* * *
70905980 TTTTCCACAGTAC
1 TTTTCAAAAGCAC
70905993 TTTTCAAAAGCA
1 TTTTCAAAAGCA
70906005 ATAAAGAACT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.35, C:0.25, G:0.08, T:0.31
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:70917192 original size:34 final size:32
Alignment explanation
Indices: 70917130--70917204 Score: 84
Period size: 32 Copynumber: 2.3 Consensus size: 32
70917120 TAAATTTTAC
* *
70917130 ATTTTTTAAATTTTTTGATAATTTATATATAT
1 ATTTTTTAAAATTTTAGATAATTTATATATAT
70917162 ATTTTTTAAAAATTTTAGA-AATTT-TA-ATAT
1 ATTTTTT-AAAATTTTAGATAATTTATATATAT
70917192 ATTTATTTTAAAA
1 A-TT-TTTTAAAA
70917205 AACTAATTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
30 5 0.13
31 8 0.21
32 16 0.42
33 9 0.24
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (32 bp):
ATTTTTTAAAATTTTAGATAATTTATATATAT
Found at i:70918220 original size:23 final size:23
Alignment explanation
Indices: 70918194--70918250 Score: 87
Period size: 23 Copynumber: 2.5 Consensus size: 23
70918184 GTTGTTTGAG
*
70918194 TTATTCGAGTTAACTCGAATTAT
1 TTATTCGAGTTAACTCGAATTAC
* *
70918217 TTATTCGAGTCAACTTGAATTAC
1 TTATTCGAGTTAACTCGAATTAC
70918240 TTATTCGAGTT
1 TTATTCGAGTT
70918251 TCGAGTTAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (23 bp):
TTATTCGAGTTAACTCGAATTAC
Found at i:70918441 original size:18 final size:19
Alignment explanation
Indices: 70918394--70918444 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
70918384 ATAAAATAAA
70918394 CAAAATAATTT-TCAAAAATT
1 CAAAAT-ATTTAT-AAAAATT
*
70918414 TAAAATATTTATAAAAATT
1 CAAAATATTTATAAAAATT
70918433 CAAAA-ATTTATA
1 CAAAATATTTATA
70918445 TTTTTAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 7 0.25
19 15 0.54
20 6 0.21
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (19 bp):
CAAAATATTTATAAAAATT
Found at i:70918441 original size:27 final size:26
Alignment explanation
Indices: 70918404--70918459 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
70918394 CAAAATAATT
*
70918404 TTCAAAAATTTAAAATATTTATAAAAA
1 TTCAAAAATTT-AAATATTTAAAAAAA
* *
70918431 TTCAAAAATTTATATTTTTAAAAAAA
1 TTCAAAAATTTAAATATTTAAAAAAA
70918457 TTC
1 TTC
70918460 TAGAAGAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (26 bp):
TTCAAAAATTTAAATATTTAAAAAAA
Found at i:70921944 original size:13 final size:13
Alignment explanation
Indices: 70921926--70921952 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
70921916 TGGCCCAACA
70921926 AATTTTATTTTTT
1 AATTTTATTTTTT
70921939 AATTTTATTTTTT
1 AATTTTATTTTTT
70921952 A
1 A
70921953 GATAAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (13 bp):
AATTTTATTTTTT
Found at i:70922548 original size:31 final size:31
Alignment explanation
Indices: 70922507--70922566 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
70922497 ACTTAAGGTT
* *
70922507 TTTTTTTTCAACTAAGT-ACCTAAACTTGGTC
1 TTTTTGTTCAAATAAGTAACC-AAACTTGGTC
*
70922538 TTTTTGTTCAAATTAGTAACCAAACTTGG
1 TTTTTGTTCAAATAAGTAACCAAACTTGG
70922567 CTTCATAGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 22 0.88
32 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.12, T:0.43
Consensus pattern (31 bp):
TTTTTGTTCAAATAAGTAACCAAACTTGGTC
Found at i:70924361 original size:16 final size:17
Alignment explanation
Indices: 70924340--70924372 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
70924330 ATAAATAAAC
*
70924340 AAAATATAAAAA-CCAA
1 AAAATAAAAAAATCCAA
70924356 AAAATAAAAAAATCCAA
1 AAAATAAAAAAATCCAA
70924373 GTCCACTTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (17 bp):
AAAATAAAAAAATCCAA
Found at i:70927001 original size:67 final size:67
Alignment explanation
Indices: 70926893--70927091 Score: 362
Period size: 67 Copynumber: 3.0 Consensus size: 67
70926883 GTTTATATTA
* *
70926893 CAGGGGATTTAGCCTGGGCTGGTAATCCCGCTGTAAGAAATGAGGTTCGCGGGAGTGTGCTCTCT
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGAAATGAGGTTCGCGAGAGTGTGCTCTCT
70926958 TG
66 TG
70926960 CAGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGAAATGAGGTTCGCGAGAGTGTGCTCTCT
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGAAATGAGGTTCGCGAGAGTGTGCTCTCT
70927025 TG
66 TG
* *
70927027 CAGGGGATTTAGCCAGGACTGGTAATCCCGCTATAAGAAATGAGGTTCGCGAGAGTGTGCTCTCT
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGAAATGAGGTTCGCGAGAGTGTGCTCTCT
70927092 GAATTGGAAA
Statistics
Matches: 128, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 128 1.00
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (67 bp):
CAGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGAAATGAGGTTCGCGAGAGTGTGCTCTCT
TG
Found at i:70929361 original size:3 final size:3
Alignment explanation
Indices: 70929353--70929386 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
70929343 ACTCGTACTG
* *
70929353 TTA TTA TTA TTA TTA GTA TTA TTA TTA TTT TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
70929387 CGTTCATGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:70943320 original size:21 final size:21
Alignment explanation
Indices: 70943296--70943458 Score: 125
Period size: 21 Copynumber: 7.8 Consensus size: 21
70943286 CAACAGCTTG
*
70943296 TAAGAGCTAAACAGAAACTCA
1 TAAGAGTTAAACAGAAACTCA
* * *
70943317 TAAGGGTTGAACAGAAGCTCA
1 TAAGAGTTAAACAGAAACTCA
* * * *
70943338 TAAAAGCTGAACGGAAACTCA
1 TAAGAGTTAAACAGAAACTCA
*
70943359 TATGAGTTAAACA-AAAGCTCA
1 TAAGAGTTAAACAGAAA-CTCA
* * * *
70943380 TTAGAGCTGAA-TGAAAACTCA
1 TAAGAGTTAAACAG-AAACTCA
*
70943401 TAAGAGTTAAACAGAAGCTCA
1 TAAGAGTTAAACAGAAACTCA
* *
70943422 AAAGAGTTGAAC-GAAAACTCA
1 TAAGAGTTAAACAG-AAACTCA
*
70943443 TATGAGTTAAACAGAA
1 TAAGAGTTAAACAGAA
70943459 GCTTGTAAGA
Statistics
Matches: 106, Mismatches: 30, Indels: 12
0.72 0.20 0.08
Matches are distributed among these distances:
20 4 0.04
21 97 0.92
22 5 0.05
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (21 bp):
TAAGAGTTAAACAGAAACTCA
Found at i:70943469 original size:42 final size:42
Alignment explanation
Indices: 70943296--70943471 Score: 210
Period size: 42 Copynumber: 4.2 Consensus size: 42
70943286 CAACAGCTTG
* * *
70943296 TAAGAGCTAAAC-AGAAACTCATAAGGGTTGAACAGAAGCTCA
1 TAAGAGCTGAACGA-AAACTCATAAGAGTTAAACAGAAGCTCA
* * * *
70943338 TAAAAGCTGAACGGAAACTCATATGAGTTAAACAAAAGCTCA
1 TAAGAGCTGAACGAAAACTCATAAGAGTTAAACAGAAGCTCA
* *
70943380 TTAGAGCTGAATGAAAACTCATAAGAGTTAAACAGAAGCTCA
1 TAAGAGCTGAACGAAAACTCATAAGAGTTAAACAGAAGCTCA
* * * **
70943422 AAAGAGTTGAACGAAAACTCATATGAGTTAAACAGAAGCTTG
1 TAAGAGCTGAACGAAAACTCATAAGAGTTAAACAGAAGCTCA
70943464 TAAGAGCT
1 TAAGAGCT
70943472 AAATGGAAAA
Statistics
Matches: 111, Mismatches: 22, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
42 111 1.00
ACGTcount: A:0.45, C:0.15, G:0.20, T:0.20
Consensus pattern (42 bp):
TAAGAGCTGAACGAAAACTCATAAGAGTTAAACAGAAGCTCA
Found at i:70943470 original size:84 final size:83
Alignment explanation
Indices: 70943284--70943473 Score: 247
Period size: 84 Copynumber: 2.3 Consensus size: 83
70943274 TCGAAAGCTG
* ** * *
70943284 AACAACAGCTTGTAAGAGCTAAACAGAAACTCATAAGGGTTGAACAGAAGCTCATAAAAGCTGAA
1 AACAAAAGCTTGTAAGAGCTAATGA-AAACTCATAAGAGTTAAACAGAAGCTCATAAAAGCTGAA
*
70943349 CGGAAACTCATATGAGTTA
65 CGAAAACTCATATGAGTTA
** * *
70943368 AACAAAAGCTCATTAGAGCTGAATGAAAACTCATAAGAGTTAAACAGAAGCTCA-AAAGAGTTGA
1 AACAAAAGCTTGTAAGAGCT-AATGAAAACTCATAAGAGTTAAACAGAAGCTCATAAA-AGCTGA
70943432 ACGAAAACTCATATGAGTTA
64 ACGAAAACTCATATGAGTTA
*
70943452 AACAGAAGCTTGTAAGAGCTAA
1 AACAAAAGCTTGTAAGAGCTAA
70943474 ATGGAAAATA
Statistics
Matches: 90, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
83 5 0.06
84 82 0.91
85 3 0.03
ACGTcount: A:0.46, C:0.15, G:0.19, T:0.19
Consensus pattern (83 bp):
AACAAAAGCTTGTAAGAGCTAATGAAAACTCATAAGAGTTAAACAGAAGCTCATAAAAGCTGAAC
GAAAACTCATATGAGTTA
Found at i:70944243 original size:14 final size:14
Alignment explanation
Indices: 70944224--70944263 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
70944214 TTGATTGGCA
70944224 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
70944238 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
70944252 GGAAAATGTTTT
1 GTAAAATGTTTT
70944264 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:70944272 original size:20 final size:20
Alignment explanation
Indices: 70944247--70944286 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
70944237 CGTAAAATGA
*
70944247 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
70944267 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
70944287 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:70944276 original size:34 final size:35
Alignment explanation
Indices: 70944232--70944298 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
70944222 CAGTAAAATG
*
70944232 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
70944266 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
70944299 CTAGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:70944410 original size:20 final size:20
Alignment explanation
Indices: 70944385--70944423 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
70944375 GTTTTTACAT
70944385 ATATTAATAAATTTATATAC
1 ATATTAATAAATTTATATAC
*
70944405 ATATTAATAAATTTTTATA
1 ATATTAATAAATTTATATA
70944424 TTTTAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTAATAAATTTATATAC
Found at i:70944483 original size:15 final size:15
Alignment explanation
Indices: 70944454--70944505 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 15
70944444 TATTGCAATG
*
70944454 ATTTATTTATAAATAA
1 ATTT-TTTATTAATAA
70944470 ATTTTTTATTAATAAA
1 ATTTTTTATTAAT-AA
*
70944486 AGTTTTTATCTAATTAA
1 ATTTTTTAT-TAA-TAA
70944503 ATT
1 ATT
70944506 CCAAATGTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
15 8 0.27
16 14 0.47
17 7 0.23
18 1 0.03
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTTTTATTAATAA
Found at i:70947882 original size:25 final size:25
Alignment explanation
Indices: 70947834--70947883 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
70947824 AGAAGAGAAG
*
70947834 ATGAAGAACAGAAGAAGAAAAAGGA
1 ATGAAAAACAGAAGAAGAAAAAGGA
* *
70947859 ATGAAAAACGGAAGAAGAAGAAGGA
1 ATGAAAAACAGAAGAAGAAAAAGGA
70947884 GCCTTACCTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.62, C:0.04, G:0.30, T:0.04
Consensus pattern (25 bp):
ATGAAAAACAGAAGAAGAAAAAGGA
Found at i:70947963 original size:12 final size:12
Alignment explanation
Indices: 70947943--70947986 Score: 70
Period size: 12 Copynumber: 3.7 Consensus size: 12
70947933 TTTGCAATCC
70947943 AAGGGGAAGGGA
1 AAGGGGAAGGGA
* *
70947955 AAAGGGAAGGGG
1 AAGGGGAAGGGA
70947967 AAGGGGAAGGGA
1 AAGGGGAAGGGA
70947979 AAGGGGAA
1 AAGGGGAA
70947987 AGGGTAGAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (12 bp):
AAGGGGAAGGGA
Found at i:70947967 original size:6 final size:6
Alignment explanation
Indices: 70947943--70947986 Score: 61
Period size: 6 Copynumber: 7.3 Consensus size: 6
70947933 TTTGCAATCC
* * *
70947943 AAGGGG AAGGGA AAAGGG AAGGGG AAGGGG AAGGGA AAGGGG AA
1 AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG AA
70947987 AGGGTAGAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (6 bp):
AAGGGG
Found at i:70947999 original size:24 final size:24
Alignment explanation
Indices: 70947948--70948000 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
70947938 AATCCAAGGG
* **
70947948 GAAGGGAAAAGGGAAGGGGAAGGG
1 GAAGGGAAAAGGGAAAGGGAAGAA
* *
70947972 GAAGGGAAAGGGGAAAGGGTAGAA
1 GAAGGGAAAAGGGAAAGGGAAGAA
70947996 GAAGG
1 GAAGG
70948001 CATCATTTTC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.43, C:0.00, G:0.55, T:0.02
Consensus pattern (24 bp):
GAAGGGAAAAGGGAAAGGGAAGAA
Found at i:70950923 original size:74 final size:74
Alignment explanation
Indices: 70950836--70950983 Score: 269
Period size: 74 Copynumber: 2.0 Consensus size: 74
70950826 CATCAAAATT
*
70950836 TTGGTTATCGTTATTATCAAAAAAAGAAAAATTAGTTTCCGCAAGCTAAATTGTTTAAGATGTTA
1 TTGGTTATCGTTATTATCAAAAAAAGAAAAATTAGTTTCCGCAAGCTAAACTGTTTAAGATGTTA
70950901 TATATAAAG
66 TATATAAAG
* *
70950910 TTGGTTTTCGTTATTATCAAAAAAAGAAAAATTAGTTTCCGCAAGTTAAACTGTTTAAGATGTTA
1 TTGGTTATCGTTATTATCAAAAAAAGAAAAATTAGTTTCCGCAAGCTAAACTGTTTAAGATGTTA
70950975 TATATAAAG
66 TATATAAAG
70950984 GTGATCATGT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 71 1.00
ACGTcount: A:0.40, C:0.08, G:0.15, T:0.37
Consensus pattern (74 bp):
TTGGTTATCGTTATTATCAAAAAAAGAAAAATTAGTTTCCGCAAGCTAAACTGTTTAAGATGTTA
TATATAAAG
Found at i:70951674 original size:13 final size:14
Alignment explanation
Indices: 70951649--70951681 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
70951639 TTGTTTTAGT
70951649 TTTAAACAATATTA
1 TTTAAACAATATTA
*
70951663 TTTAAA-AATATTT
1 TTTAAACAATATTA
70951676 TTTAAA
1 TTTAAA
70951682 TTTATTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (14 bp):
TTTAAACAATATTA
Found at i:70955023 original size:45 final size:44
Alignment explanation
Indices: 70954861--70955058 Score: 159
Period size: 44 Copynumber: 4.5 Consensus size: 44
70954851 TTGCTACTTT
* * * *
70954861 AATCTGTTCCGCTGCAACTTTAGGGAGATAAGA-TTAGTAACTTC
1 AATCTGTTCCACTGCAACTTTAAGAAGATAAGATTTA-TATCTTC
* * * * *
70954905 AATCTGTTCCACTGCAACTTTAGGAAAATAATATTTATAGCTTT
1 AATCTGTTCCACTGCAACTTTAAGAAGATAAGATTTATATCTTC
* * ** * *
70954949 AATTTATTATACTGCAATTTTAA-AGAGATAATATTTACTATCTTC
1 AATCTGTTCCACTGCAACTTTAAGA-AGATAAGATTTA-TATCTTC
* * *
70954994 AATCTGCTCCACTGCAACTTCAAGAAGATAAGATTTGTTATCTTC
1 AATCTGTTCCACTGCAACTTTAAGAAGATAAGATTT-ATATCTTC
*
70955039 AATCTGCTT-CACTACAACTT
1 AATCTG-TTCCACTGCAACTT
70955059 CAAAAATAGT
Statistics
Matches: 122, Mismatches: 26, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
43 1 0.01
44 62 0.51
45 57 0.47
46 2 0.02
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (44 bp):
AATCTGTTCCACTGCAACTTTAAGAAGATAAGATTTATATCTTC
Done.