Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 236 of 240
Found at i:71350203 original size:19 final size:19
Alignment explanation
Indices: 71349915--71350208 Score: 109
Period size: 19 Copynumber: 15.4 Consensus size: 19
71349905 TATAGTTTAG
*
71349915 ATTAGAATTTTGTATGAAT
1 ATTATAATTTTGTATGAAT
*
71349934 ATTCTAACTTTTTTGTATGAAT
1 ATTATAA---TTTTGTATGAAT
* *
71349956 ATTGTAATTTTTTTATGAAT
1 ATTATAA-TTTTGTATGAAT
* *
71349976 ATTGTAATGTTGTATGAAT
1 ATTATAATTTTGTATGAAT
* *
71349995 ATTGTAATTATTTTAT--A-
1 ATTATAATT-TTGTATGAAT
*
71350012 ATTA-AA-TTTGTATTTATAGT
1 ATTATAATTTTGTA-TGA-A-T
*
71350032 TTTGGATTAGTATTTTGTATGAAT
1 ATT--A-TA--ATTTTGTATGAAT
*
71350056 ATTGTAATTTTGTATGAAT
1 ATTATAATTTTGTATGAAT
* * *
71350075 ATTGTAATTTTTTTTG--T
1 ATTATAATTTTGTATGAAT
* *
71350092 A-T-GAATATTG--T-AAT
1 ATTATAATTTTGTATGAAT
71350106 ATTATAATTTTGTATGAAT
1 ATTATAATTTTGTATGAAT
**
71350125 ATTGCAATTTTTTTGTATGAAT
1 ATT---ATAATTTTGTATGAAT
*
71350147 ATTATAATTTTGTA--ATT
1 ATTATAATTTTGTATGAAT
* *
71350164 TTGTATGAATATTG--T-AAT
1 AT-TAT-AATTTTGTATGAAT
71350182 ATTATAATTTTGTATGAAT
1 ATTATAATTTTGTATGAAT
*
71350201 ATTGTAAT
1 ATTATAAT
71350209 GTCGGGATAT
Statistics
Matches: 210, Mismatches: 32, Indels: 66
0.68 0.10 0.21
Matches are distributed among these distances:
13 1 0.00
14 6 0.03
15 8 0.04
16 15 0.07
17 11 0.05
18 10 0.05
19 81 0.39
20 26 0.12
21 2 0.01
22 36 0.17
24 4 0.02
25 1 0.00
26 3 0.01
27 6 0.03
ACGTcount: A:0.32, C:0.01, G:0.13, T:0.54
Consensus pattern (19 bp):
ATTATAATTTTGTATGAAT
Found at i:71350330 original size:60 final size:60
Alignment explanation
Indices: 71350249--71350370 Score: 167
Period size: 60 Copynumber: 2.0 Consensus size: 60
71350239 TGTATGAATA
* * * *
71350249 TTGTAATTATTTTATAATTAATTTGTTAGTAATTT-GAGATTATGTTATAAATTTTTGTGT
1 TTGTAATTATTTTAAAATTAATTTATTAGTAATTTAG-GATTAAGCTATAAATTTTTGTGT
*
71350309 TTGTAATTA-TTTAAAATTTAATTTATTAGTAATTTAGGATTAAGCTATAAGTTTTTGTGT
1 TTGTAATTATTTTAAAA-TTAATTTATTAGTAATTTAGGATTAAGCTATAAATTTTTGTGT
71350369 TT
1 TT
71350371 AGTTTAGTAT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
59 6 0.11
60 48 0.87
61 1 0.02
ACGTcount: A:0.31, C:0.01, G:0.13, T:0.55
Consensus pattern (60 bp):
TTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTTTTGTGT
Found at i:71350449 original size:38 final size:38
Alignment explanation
Indices: 71350404--71350485 Score: 137
Period size: 38 Copynumber: 2.2 Consensus size: 38
71350394 CATATAAAGT
*
71350404 TTATAAAAAAATTAAAAATTATTTCATTAAAAGTTTAA
1 TTATAAAAAAATTAAAAATCATTTCATTAAAAGTTTAA
* *
71350442 TTATAAAAAAATTAAAACTCATTTTATTAAAAGTTTAA
1 TTATAAAAAAATTAAAAATCATTTCATTAAAAGTTTAA
71350480 TTATAA
1 TTATAA
71350486 CTGACTTTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (38 bp):
TTATAAAAAAATTAAAAATCATTTCATTAAAAGTTTAA
Found at i:71351818 original size:23 final size:22
Alignment explanation
Indices: 71351771--71351814 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
71351761 ATAAAATTAT
* *
71351771 TAAATATTAAAATAATATAATA
1 TAAATATTAAAAAAATATAAAA
71351793 TAAATATTTAAAAAAAT-TAAAA
1 TAAATA-TTAAAAAAATATAAAA
71351815 ATAATATGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (22 bp):
TAAATATTAAAAAAATATAAAA
Found at i:71361941 original size:18 final size:17
Alignment explanation
Indices: 71361909--71361956 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 17
71361899 AATTTTGAAT
71361909 TTTTTTAAAAAAAATTG
1 TTTTTTAAAAAAAATTG
* *
71361926 TTTTTTAACAATAAATTT
1 TTTTTTAA-AAAAAATTG
71361944 TAATTTTTAAAAA
1 T--TTTTTAAAAA
71361957 TAGTTTTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
17 8 0.32
18 8 0.32
19 2 0.08
20 7 0.28
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (17 bp):
TTTTTTAAAAAAAATTG
Found at i:71361965 original size:20 final size:20
Alignment explanation
Indices: 71361910--71361958 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
71361900 ATTTTGAATT
*
71361910 TTTTTAAAAA-AAATTGT--
1 TTTTTAAAAATAAATTTTAA
*
71361927 TTTTTAACAATAAATTTTAA
1 TTTTTAAAAATAAATTTTAA
71361947 TTTTTAAAAATA
1 TTTTTAAAAATA
71361959 GTTTTTATAG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 9 0.35
18 6 0.23
20 11 0.42
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (20 bp):
TTTTTAAAAATAAATTTTAA
Found at i:71362697 original size:23 final size:22
Alignment explanation
Indices: 71362650--71362693 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
71362640 ATAAAATTAT
* *
71362650 TAAATATTAAAATAATATAATA
1 TAAATATTAAAAAAATATAAAA
71362672 TAAATATTTAAAAAAAT-TAAAA
1 TAAATA-TTAAAAAAATATAAAA
71362694 ATAATATGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (22 bp):
TAAATATTAAAAAAATATAAAA
Found at i:71366113 original size:32 final size:32
Alignment explanation
Indices: 71366053--71366113 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
71366043 GGCTGTAATA
* *
71366053 TTTGATGCTTTGTTTTCTTTTGAGTATTTTGG
1 TTTGATGCTTTGATTTCTGTTGAGTATTTTGG
*
71366085 TTTGATGCTTTTGATTTGTGTTGA-TATTT
1 TTTGATGC-TTTGATTTCTGTTGAGTATTT
71366114 GAGTGTAATC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
32 13 0.52
33 12 0.48
ACGTcount: A:0.11, C:0.05, G:0.21, T:0.62
Consensus pattern (32 bp):
TTTGATGCTTTGATTTCTGTTGAGTATTTTGG
Found at i:71374399 original size:2 final size:2
Alignment explanation
Indices: 71374394--71374423 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
71374384 TTTTTACTTA
71374394 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
71374424 GAAGTGCTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:71375322 original size:77 final size:77
Alignment explanation
Indices: 71375195--71375353 Score: 284
Period size: 77 Copynumber: 2.1 Consensus size: 77
71375185 AGAAGATGGA
71375195 TCCCAAGTGGTTGTTGCTGGGAAAAGCAAATGAAAGTGGAAATTAAAGAGGTCCCAGTCCATGAA
1 TCCCAAGTGGTTGTTGCTGGGAAAAGCAAATGAAAGTGGAAATTAAAGAGGTCCCAGTCCATGAA
* *
71375260 ATTCTTGCACCC
66 ACTATTGCACCC
71375272 TCCCAAGTGGTTGTTGCTGGGAAAAG-ACAATGAAAGTGGAAATTAAAGAGGTCCCAGTCCATGA
1 TCCCAAGTGGTTGTTGCTGGGAAAAGCA-AATGAAAGTGGAAATTAAAGAGGTCCCAGTCCATGA
71375336 AACTATTGCACCC
65 AACTATTGCACCC
71375349 TCCCA
1 TCCCA
71375354 TTTTTCCGTC
Statistics
Matches: 79, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
76 1 0.01
77 78 0.99
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.23
Consensus pattern (77 bp):
TCCCAAGTGGTTGTTGCTGGGAAAAGCAAATGAAAGTGGAAATTAAAGAGGTCCCAGTCCATGAA
ACTATTGCACCC
Found at i:71376289 original size:23 final size:23
Alignment explanation
Indices: 71376239--71376298 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 23
71376229 AAAAATATAT
* *
71376239 AAAATTAT-TAAATA-TTAAAAT
1 AAAATAATATAAATATTTAAAAA
*
71376260 AATATAATATAAATATTTAAAAA
1 AAAATAATATAAATATTTAAAAA
* *
71376283 AAAATAAAATTAATAT
1 AAAATAATATAAATAT
71376299 GGACAGGGCT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
21 6 0.19
22 6 0.19
23 19 0.61
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (23 bp):
AAAATAATATAAATATTTAAAAA
Found at i:71378639 original size:153 final size:152
Alignment explanation
Indices: 71378361--71378676 Score: 551
Period size: 153 Copynumber: 2.1 Consensus size: 152
71378351 TCCTATCCCT
* * * * *
71378361 TCTTCTGGAAATGACACCACACGTGAGCATCCCTCACCGCCGATATTGAGCTCTTGAGTGGAGTT
1 TCTTCTGGGAATGACACCACACGTGAGCATCCCTCACCGCCAATAGTGAGCTCTTGAGTAGAGGT
71378426 GAGTCTATTTAATCCCCATTCAACAAGTGATGTATACATTTTGGGTCCATTTGAGATTTCAAGTG
66 GAGTCTATTTAATCCCCATTCAACAAGTGATGTATACATTTTGGGTCCATTTGAGATTTCAAGTG
*
71378491 ATGTGAGATTCGTAGGGAAACCC
131 ATGTGAGATTCGTAAGGAAA-CC
*
71378514 TCTTCTGGGAATGACACCACACGTGAGCATCCCTCACCGCCAATAGTGAGCTCTTTAGTAGAGGT
1 TCTTCTGGGAATGACACCACACGTGAGCATCCCTCACCGCCAATAGTGAGCTCTTGAGTAGAGGT
*
71378579 GAGTCTATTTAATCCCCATTCAACAAGTGATGTATATATTTTGGGTCCATTTGAGATTTCAAGTG
66 GAGTCTATTTAATCCCCATTCAACAAGTGATGTATACATTTTGGGTCCATTTGAGATTTCAAGTG
71378644 ATGTGAGATTCGTAAGGAAACC
131 ATGTGAGATTCGTAAGGAAACC
71378666 TCTTCTGGGAA
1 TCTTCTGGGAA
71378677 GGATATATCA
Statistics
Matches: 155, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
152 13 0.08
153 142 0.92
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (152 bp):
TCTTCTGGGAATGACACCACACGTGAGCATCCCTCACCGCCAATAGTGAGCTCTTGAGTAGAGGT
GAGTCTATTTAATCCCCATTCAACAAGTGATGTATACATTTTGGGTCCATTTGAGATTTCAAGTG
ATGTGAGATTCGTAAGGAAACC
Found at i:71388406 original size:32 final size:31
Alignment explanation
Indices: 71388360--71388605 Score: 152
Period size: 32 Copynumber: 8.0 Consensus size: 31
71388350 TCTTAGATAA
71388360 TTTTAAAGAGTTTTATTAGGATTCAATTACT
1 TTTTAAAGAGTTTTATTAGGATTCAATTACT
*
71388391 TTTTAAAGAGTTTTTATTAGGATTCAATTGCT
1 TTTTAAAGAG-TTTTATTAGGATTCAATTACT
* *
71388423 CTTGAAAGAGTTTTATTAGGATTCAATTACT
1 TTTTAAAGAGTTTTATTAGGATTCAATTACT
* * ** * * * * ***
71388454 CTTGTAATTTGCCTATAAATAGGCTTGTTTGTTA-T
1 -TTTTAA--AGAGTTTTATTAGG-AT-TCAATTACT
*** *
71388489 TATTTATTTA-TTTTCTTA-GA-T--A--A--
1 T-TTTAAAGAGTTTTATTAGGATTCAATTACT
71388512 TTTTAAAGAGTTTTATTAGGATTCAATTACT
1 TTTTAAAGAGTTTTATTAGGATTCAATTACT
*
71388543 CTTTAAAGAGTTTTTATTAGGATTCAATTACT
1 TTTTAAAGAG-TTTTATTAGGATTCAATTACT
* * *
71388575 CTTGAAAGAGTTTTATTATGATTCAATTACT
1 TTTTAAAGAGTTTTATTAGGATTCAATTACT
71388606 CTTGTAATTT
Statistics
Matches: 164, Mismatches: 34, Indels: 34
0.71 0.15 0.15
Matches are distributed among these distances:
22 5 0.03
23 8 0.05
24 3 0.02
25 1 0.01
27 1 0.01
28 1 0.01
29 1 0.01
31 60 0.37
32 65 0.40
33 1 0.01
34 9 0.05
35 5 0.03
36 4 0.02
ACGTcount: A:0.30, C:0.08, G:0.13, T:0.48
Consensus pattern (31 bp):
TTTTAAAGAGTTTTATTAGGATTCAATTACT
Found at i:71388525 original size:152 final size:152
Alignment explanation
Indices: 71388332--71388635 Score: 581
Period size: 152 Copynumber: 2.0 Consensus size: 152
71388322 TATTGGTTAG
*
71388332 GTTATTATTTATTTATTTTCTTAGATAATTTTAAAGAGTTTTATTAGGATTCAATTACTTTTTAA
1 GTTATTATTTATTTATTTTCTTAGATAATTTTAAAGAGTTTTATTAGGATTCAATTACTCTTTAA
*
71388397 AGAGTTTTTATTAGGATTCAATTGCTCTTGAAAGAGTTTTATTAGGATTCAATTACTCTTGTAAT
66 AGAGTTTTTATTAGGATTCAATTACTCTTGAAAGAGTTTTATTAGGATTCAATTACTCTTGTAAT
71388462 TTGCCTATAAATAGGCTTGTTT
131 TTGCCTATAAATAGGCTTGTTT
71388484 GTTATTATTTATTTATTTTCTTAGATAATTTTAAAGAGTTTTATTAGGATTCAATTACTCTTTAA
1 GTTATTATTTATTTATTTTCTTAGATAATTTTAAAGAGTTTTATTAGGATTCAATTACTCTTTAA
*
71388549 AGAGTTTTTATTAGGATTCAATTACTCTTGAAAGAGTTTTATTATGATTCAATTACTCTTGTAAT
66 AGAGTTTTTATTAGGATTCAATTACTCTTGAAAGAGTTTTATTAGGATTCAATTACTCTTGTAAT
71388614 TTGCCTATAAATAGGCTTGTTT
131 TTGCCTATAAATAGGCTTGTTT
71388636 TCTACACATT
Statistics
Matches: 149, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
152 149 1.00
ACGTcount: A:0.29, C:0.08, G:0.13, T:0.49
Consensus pattern (152 bp):
GTTATTATTTATTTATTTTCTTAGATAATTTTAAAGAGTTTTATTAGGATTCAATTACTCTTTAA
AGAGTTTTTATTAGGATTCAATTACTCTTGAAAGAGTTTTATTAGGATTCAATTACTCTTGTAAT
TTGCCTATAAATAGGCTTGTTT
Found at i:71388606 original size:31 final size:31
Alignment explanation
Indices: 71388516--71388609 Score: 161
Period size: 31 Copynumber: 3.0 Consensus size: 31
71388506 AGATAATTTT
*
71388516 AAAGAGTTTTATTAGGATTCAATTACTCTTT
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
71388547 AAAGAGTTTTTATTAGGATTCAATTACTCTTG
1 AAAGAG-TTTTATTAGGATTCAATTACTCTTG
*
71388579 AAAGAGTTTTATTATGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
71388610 TAATTTGCCT
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
31 30 0.50
32 30 0.50
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.45
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Found at i:71395122 original size:4 final size:4
Alignment explanation
Indices: 71395113--71395139 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
71395103 AATCAAATAC
71395113 TTAT TTAT TTAT TTAT TTAT TTAT TTA
1 TTAT TTAT TTAT TTAT TTAT TTAT TTA
71395140 CGTATTAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TTAT
Found at i:71399376 original size:28 final size:28
Alignment explanation
Indices: 71399333--71399388 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
71399323 ATCATGTTGT
*
71399333 TCATGAGGACAGTCAGATATATATAAAG
1 TCATGAGGACAATCAGATATATATAAAG
71399361 TCATGAGGACAATCAGATATATATAAAG
1 TCATGAGGACAATCAGATATATATAAAG
71399389 AAAAGGTATG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.45, C:0.11, G:0.20, T:0.25
Consensus pattern (28 bp):
TCATGAGGACAATCAGATATATATAAAG
Found at i:71402273 original size:33 final size:33
Alignment explanation
Indices: 71402231--71402296 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
71402221 CATGCATTAC
* *
71402231 GAATCGGGACTTATCTTTACTGGATGTTTGAAA
1 GAATCGGGACTTATATTTACTGGATGTCTGAAA
71402264 GAATCGGGACTTATATTTACTGGATGTCTGAAA
1 GAATCGGGACTTATATTTACTGGATGTCTGAAA
71402297 AAATGACCTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35
Consensus pattern (33 bp):
GAATCGGGACTTATATTTACTGGATGTCTGAAA
Found at i:71405461 original size:31 final size:31
Alignment explanation
Indices: 71405424--71405487 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
71405414 AAATGATTAT
*
71405424 TAAACTATTCAAAAGTTTTCATTTAAGTCAC
1 TAAACTATTCAAAAGTTTTCATCTAAGTCAC
*** *
71405455 TAAACTATTTGGAAGTTTTTATCTAAGTCAC
1 TAAACTATTCAAAAGTTTTCATCTAAGTCAC
71405486 TA
1 TA
71405488 CTTTGTTAAG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.36, C:0.14, G:0.09, T:0.41
Consensus pattern (31 bp):
TAAACTATTCAAAAGTTTTCATCTAAGTCAC
Found at i:71406635 original size:13 final size:13
Alignment explanation
Indices: 71406617--71406641 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71406607 AGTTCTTTAT
71406617 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
71406630 TGCTTTTGAGAA
1 TGCTTTTGAGAA
71406642 ATTTGAGTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.28, T:0.40
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:71407297 original size:44 final size:44
Alignment explanation
Indices: 71407249--71407342 Score: 179
Period size: 44 Copynumber: 2.1 Consensus size: 44
71407239 TATATTCAAT
*
71407249 AAATGATTTGGTTAATATAATACTTATATTTGATAAGCATATGA
1 AAATGATTTGGTTAATACAATACTTATATTTGATAAGCATATGA
71407293 AAATGATTTGGTTAATACAATACTTATATTTGATAAGCATATGA
1 AAATGATTTGGTTAATACAATACTTATATTTGATAAGCATATGA
71407337 AAATGA
1 AAATGA
71407343 AAGTCGAGAC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 49 1.00
ACGTcount: A:0.43, C:0.05, G:0.14, T:0.38
Consensus pattern (44 bp):
AAATGATTTGGTTAATACAATACTTATATTTGATAAGCATATGA
Found at i:71410194 original size:30 final size:27
Alignment explanation
Indices: 71410138--71410212 Score: 107
Period size: 30 Copynumber: 2.7 Consensus size: 27
71410128 AGATAAACTC
71410138 ACCGGCAGAGGGCAGAG-GAACAAAGA
1 ACCGGCAGAGGGCAGAGAGAACAAAGA
71410164 ACCGGCAGAGGGCAGAGATGAAGGCAAAGA
1 ACCGGCAGAGGGCAGAGA-GAA--CAAAGA
*
71410194 ACCAGCAGAGGGCAGAGAG
1 ACCGGCAGAGGGCAGAGAG
71410213 CAGTGAGCAA
Statistics
Matches: 44, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
26 17 0.39
28 3 0.07
29 1 0.02
30 23 0.52
ACGTcount: A:0.40, C:0.19, G:0.40, T:0.01
Consensus pattern (27 bp):
ACCGGCAGAGGGCAGAGAGAACAAAGA
Found at i:71424473 original size:19 final size:19
Alignment explanation
Indices: 71424451--71424520 Score: 61
Period size: 19 Copynumber: 3.6 Consensus size: 19
71424441 TTAAAGTGAA
* *
71424451 TATAATTTTTTATGATTTT
1 TATAAATTTTTATAATTTT
* *
71424470 TATAAAATTTTACAATTTCT
1 TATAAATTTTTATAATTT-T
* *
71424490 TAT-ATTTTTTCTAATTTT
1 TATAAATTTTTATAATTTT
71424508 TAATAAATTTTTA
1 T-ATAAATTTTTA
71424521 ATATTTGAAT
Statistics
Matches: 38, Mismatches: 10, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
18 2 0.05
19 26 0.68
20 10 0.26
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.61
Consensus pattern (19 bp):
TATAAATTTTTATAATTTT
Found at i:71426751 original size:14 final size:14
Alignment explanation
Indices: 71426713--71426755 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
71426703 TAAAATGTAC
71426713 AATATAATTAAA-T
1 AATATAATTAAATT
71426726 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
71426741 AA-ATAATTTAATT
1 AATATAATTAAATT
71426754 AA
1 AA
71426756 CTGTTTACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:71429236 original size:3 final size:3
Alignment explanation
Indices: 71429228--71429327 Score: 164
Period size: 3 Copynumber: 33.3 Consensus size: 3
71429218 TAAAACAATT
**
71429228 TAA TAA TAA TAA TAA TAA TAA TAA TGG TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
**
71429276 TAA TAA TAA TAA TAA TGG TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
71429324 TAA T
1 TAA T
71429328 GATGATGATG
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 89 1.00
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:71429332 original size:3 final size:3
Alignment explanation
Indices: 71429326--71429361 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
71429316 AATAATAATA
71429326 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
71429362 GTATTAATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:71430529 original size:5 final size:5
Alignment explanation
Indices: 71430519--71430546 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
71430509 CTTTCAGTCT
71430519 TTTAC TTTAC TTTAC TTTAC TTTAC TTT
1 TTTAC TTTAC TTTAC TTTAC TTTAC TTT
71430547 GTTTTGATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.64
Consensus pattern (5 bp):
TTTAC
Found at i:71432168 original size:110 final size:110
Alignment explanation
Indices: 71431856--71432402 Score: 916
Period size: 110 Copynumber: 4.9 Consensus size: 110
71431846 ATTGAAAATC
* * ** * *
71431856 AAAAGGATATTTGGCTATTCAGTTAAATGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTT
1 AAAAGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTT
* **
71431921 CTCGAATTTCCCAAACACAAAACATTGCCTTATTTTGAATTTTTTCCTT
66 CTCGAATTTCCCAAACGCAAAACATTGCCTTATTTT-AA-AGTTT--TT
*
71431970 AAAAGGATATTTAGCCATTTGGTTGAATGAGAAAAATCGACACCC-GCACCTTAGGGCACGTTTT
1 AAAAGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTT
71432034 CTCGAATTTCCCAAACGCAAAACATTGCCTTATTTTAAAGTTTTT
66 CTCGAATTTCCCAAACGCAAAACATTGCCTTATTTTAAAGTTTTT
*
71432079 AAAAGGATATTTAGCCATTTGGTTGAACGAAAAAAATCGACACCCAGCACCTTAGGGCACGTTTT
1 AAAAGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTT
*
71432144 CTCGAATTTTCCAAACGCAAAACATTGCCTTATTTTAAAGTTTTT
66 CTCGAATTTCCCAAACGCAAAACATTGCCTTATTTTAAAGTTTTT
71432189 AAAAGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTT
1 AAAAGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTT
*
71432254 CTCGAATTTCCCAAACGCAAAACATTGCCTTATTTTAAAATTTTT
66 CTCGAATTTCCCAAACGCAAAACATTGCCTTATTTTAAAGTTTTT
*
71432299 AAAAGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCGAGCACCTTAGGGCACGTTTT
1 AAAAGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTT
*
71432364 CTCGAATTTCCCAAACGCAAAACATTGCCTTAATTTAAA
66 CTCGAATTTCCCAAACGCAAAACATTGCCTTATTTTAAA
71432403 AATTTTATTT
Statistics
Matches: 416, Mismatches: 16, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
109 45 0.11
110 272 0.65
111 3 0.01
112 2 0.00
113 54 0.13
114 40 0.10
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (110 bp):
AAAAGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTT
CTCGAATTTCCCAAACGCAAAACATTGCCTTATTTTAAAGTTTTT
Found at i:71432549 original size:16 final size:18
Alignment explanation
Indices: 71432515--71432556 Score: 54
Period size: 16 Copynumber: 2.5 Consensus size: 18
71432505 ATATATAATG
71432515 AAAAG-AAATCAACAAAT
1 AAAAGTAAATCAACAAAT
71432532 AAAAGTAAAT-AA-AAAT
1 AAAAGTAAATCAACAAAT
*
71432548 AAAATTAAA
1 AAAAGTAAA
71432557 ACACTTAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 12 0.52
17 7 0.30
18 4 0.17
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.17
Consensus pattern (18 bp):
AAAAGTAAATCAACAAAT
Found at i:71434070 original size:20 final size:21
Alignment explanation
Indices: 71434024--71434062 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
71434014 GACGGTGCAA
71434024 GTGGC-GTGGTCGACGTGACT
1 GTGGCGGTGGTCGACGTGACT
71434044 GTGGCGGTGG-CGACGTGAC
1 GTGGCGGTGGTCGACGTGAC
71434063 GTTTGCGGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.10, C:0.21, G:0.49, T:0.21
Consensus pattern (21 bp):
GTGGCGGTGGTCGACGTGACT
Found at i:71434555 original size:50 final size:50
Alignment explanation
Indices: 71434388--71434767 Score: 227
Period size: 50 Copynumber: 7.7 Consensus size: 50
71434378 TGCAATGTCG
* * * * * * *
71434388 GGAAAGCAAGATTCACTATTGTAGCTCCAATCTGTTCCACTGCACCGCTA
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGCAACGCTA
* ** * * *
71434438 GAGAAAGTAAGATTCGCCATTGTAGCTTCAATCTTTTTAACT-----GCTG
1 G-GAAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGCAACGCTA
* * * * *
71434484 GGGAAGCAAGATCCGCTGTTGTAGCTTTAATCTGTTCCACTGCAACACTA
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGCAACGCTA
* * * * *
71434534 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGCCA
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGCAACGCTA
** * * * * *
71434584 GGGTAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTGAATTGCAATG-TCG
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGCAACGCT-A
* * * * * * * *
71434634 GGGAAGTAAGACCCACTGTTGTAGCTTCAATCTTTTGAATTGCAATG-TCG
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGCAACGCT-A
* * * * * * *
71434684 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGCTCCACTGCATAAC-TTG
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGC--AACGCTA
* * *
71434735 GGAAAGTAAGATTCGCCGTTGTCGCTTCAATCT
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCT
71434768 TTTGAATTGA
Statistics
Matches: 271, Mismatches: 49, Indels: 19
0.80 0.14 0.06
Matches are distributed among these distances:
45 31 0.11
46 4 0.01
50 168 0.62
51 65 0.24
52 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (50 bp):
GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGCAACGCTA
Found at i:71434641 original size:100 final size:98
Alignment explanation
Indices: 71434362--71434776 Score: 374
Period size: 100 Copynumber: 4.2 Consensus size: 98
71434352 CGCCGTTGCG
* * * * * * *
71434362 GCTTCAATC-TTTTAGTTGCAATGTCGGGAAAGCAAGATTCACTATTGTAGCTCCAATCTGTTCC
1 GCTTCAATCTTTTTAATTGCAATG-CGGG-AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCA
* * * **
71434426 ACTGCACCGCTAGAGAAAGTAAGATTCGCCATTGTA
64 ACTGCAACACTAG-GAAAGTAAGATCCGCTGTTGTA
* * * *
71434462 GCTTCAATCTTTTTAACTGC--TG-GGGAAGCAAGATCCGCTGTTGTAGCTTTAATCTGTTCCAC
1 GCTTCAATCTTTTTAATTGCAATGCGGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAAC
71434524 TGCAACACTAGGAAAGTAAGATCCGCTGTTGTA
66 TGCAACACTAGGAAAGTAAGATCCGCTGTTGTA
* * *
71434557 GCTTCAATCTTTTTAATTGCAATGCCAGGGTAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTGA
1 GCTTCAATCTTTTTAATTGCAATG-C-GGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCA
* ** * * * *
71434622 ATTGCAA-TGTCGGGGAAGTAAGACCCACTGTTGTA
64 ACTGCAACACT-AGGAAAGTAAGATCCGCTGTTGTA
* * * * *
71434657 GCTTCAATCTTTTGAATTGCAATGTCGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGCTCC
1 GCTTCAATCTTTTTAATTGCAATG-C-GGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCA
* * * *
71434722 ACTGCATA-ACTTGGGAAAGTAAGATTCGCCGTTGTC
64 ACTGCA-ACAC-TAGGAAAGTAAGATCCGCTGTTGTA
*
71434758 GCTTCAATCTTTTGAATTG
1 GCTTCAATCTTTTTAATTG
71434777 AAATCTATGG
Statistics
Matches: 261, Mismatches: 45, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
95 38 0.15
96 41 0.16
97 5 0.02
99 3 0.01
100 127 0.49
101 46 0.18
102 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (98 bp):
GCTTCAATCTTTTTAATTGCAATGCGGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAAC
TGCAACACTAGGAAAGTAAGATCCGCTGTTGTA
Found at i:71434678 original size:150 final size:145
Alignment explanation
Indices: 71434443--71434716 Score: 316
Period size: 150 Copynumber: 1.9 Consensus size: 145
71434433 CGCTAGAGAA
* * * *
71434443 AGTAAGATTCGCCATTGTAGCTTCAATCTTTTTAACTGCTGGGGAAGCAAGATCCGCTGTTGTAG
1 AGTAAGATCCGCCATTGTAGCTTCAATCTTTTGAACTGCTGGGGAAGCAAGACCCACTGTTGTAG
* * *
71434508 CTTTAATCTGTTCCACTGCAACACT-AGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTA
66 CTTCAATCTGTTCAACTGCAA-ACTCAGGAAAGTAAGATCCGCCGTTGTAGCTTCAATCTTTTTA
71434572 ATTGCAATGCCAGGGT
130 ATTGCAATGCCAGGGT
** * *
71434588 AGTAAGATCCGCTGTTGTAGCTTCAATCTTTTGAATTGCAATGTCGGGGAAGTAAGACCCACTGT
1 AGTAAGATCCGCCATTGTAGCTTCAATCTTTTGAACTGC----T-GGGGAAGCAAGACCCACTGT
* * * ** * * *
71434653 TGTAGCTTCAATCTTTTGAATTGCAATGTCGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT
61 TGTAGCTTCAATCTGTTCAACTGCAAACTCAGGAAAGTAAGATCCGCCGTTGTAGCTTCAATCT
71434717 GCTCCACTGC
Statistics
Matches: 104, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
145 34 0.33
149 2 0.02
150 68 0.65
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (145 bp):
AGTAAGATCCGCCATTGTAGCTTCAATCTTTTGAACTGCTGGGGAAGCAAGACCCACTGTTGTAG
CTTCAATCTGTTCAACTGCAAACTCAGGAAAGTAAGATCCGCCGTTGTAGCTTCAATCTTTTTAA
TTGCAATGCCAGGGT
Found at i:71451119 original size:110 final size:110
Alignment explanation
Indices: 71450877--71451192 Score: 451
Period size: 110 Copynumber: 2.9 Consensus size: 110
71450867 AATTCAATAA
* * *
71450877 GATATTTGGCAATTTGGTTAAACGAG--AAATCGAAACCCAGCACCTTAGGGCACG-TTCCTCGA
1 GATATTTAGCAATTTGGTTGAACGAGAAAAATCGAAACCCAGCACCTTAGGGCACGTTTTCTCGA
*
71450939 ATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTAAGAAG
66 ATTTCCAAAAGCAAAACATTGCCTTATTTTGAAATTTTTAAGAAG
* * * * *
71450984 GATATTAAGCCATTTAGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGA
1 GATATTTAGCAATTTGGTTGAACGAGAAAAATCGAAACCCAGCACCTTAGGGCACGTTTTCTCGA
* * *
71451049 ATTTCTAAATGGCAAAACATTGCCTTATTTTGAAATTTTTGA-AAG
66 ATTTCCAAA-AGCAAAACATTGCCTTATTTTGAAATTTTTAAGAAG
* *
71451094 GATATTTAGCTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGA
1 GATATTTAGCAATTTGGTTGAACGAGAAAAATCGAAACCCAGCACCTTAGGGCACGTTTTCTCGA
* *
71451159 ATTTCCAAAAGCTAAACATTGCCTTATTTAGAAA
66 ATTTCCAAAAGCAAAACATTGCCTTATTTTGAAA
71451193 AATTTTCCTT
Statistics
Matches: 184, Mismatches: 21, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
107 21 0.11
109 48 0.26
110 85 0.46
111 30 0.16
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30
Consensus pattern (110 bp):
GATATTTAGCAATTTGGTTGAACGAGAAAAATCGAAACCCAGCACCTTAGGGCACGTTTTCTCGA
ATTTCCAAAAGCAAAACATTGCCTTATTTTGAAATTTTTAAGAAG
Found at i:71453601 original size:46 final size:44
Alignment explanation
Indices: 71453459--71454230 Score: 452
Period size: 46 Copynumber: 17.7 Consensus size: 44
71453449 TTTTAATTTA
* * ** *
71453459 CTCCACTGCAACTTCAGGGAGATAAGATCTG-TGGT-TTTAATCCG
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAT--TCTTCGATCTG
* * * *
71453503 CTCCGCTGTAACTTCAGGGAGATAGGAT-AG-TGTCTTCGATCTG
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAT-TCTTCGATCTG
* * * *
71453546 CTCCGCTGTAACCTCAGGGGGATAAGATCTGAAATTCTTCGGTCTA
1 CTCCACTGTAACCTCAGGGAGATAAGATCTG--ATTCTTCGATCTG
* * * *
71453592 CTCTACTGTAACCTCAGGGAGATAAGACCTG-GT-GT-GATCTG
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGATTCTTCGATCTG
* * * * * *
71453633 CTCTACTGTAACTTCAGAGAGATAAGATCCTTTATT-TT-AATCCG
1 CTCCACTGTAACCTCAGGGAGATAAGAT-C-TGATTCTTCGATCTG
* * *
71453677 CTCCACTGTAACTTCAGGGAGATAGGAT-T-ATGTCTTCGATTTG
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAT-TCTTCGATCTG
* * *
71453720 CTCCGCTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTA
1 CTCCACTGTAACCTCAGGGAGATAAGATCTG--ATTCTTCGATCTG
* * * *
71453766 CTCTACTGTAACCTCAGGGAGATAAGACCTG-GT-GT-GATCTG
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGATTCTTCGATCTG
* * * * * *
71453807 CTCTACTGTAACTTCAGAGAGATAAGATCCTTTATT-TT-AATCCG
1 CTCCACTGTAACCTCAGGGAGATAAGAT-C-TGATTCTTCGATCTG
* * *
71453851 CTCCACTGTAACTTCAGGTAGATAGGAT-T-ATGTCTTCGATCTG
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAT-TCTTCGATCTG
* * * *
71453894 CTCCGCTGTAACCTCAGGGGGATAAGATCTGAAATTCTTCGGTCTA
1 CTCCACTGTAACCTCAGGGAGATAAGATCTG--ATTCTTCGATCTG
* * * *
71453940 CTCTACTGTAACCTCAGGGAGATAAGACCTGA-T-GT-GATCTA
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGATTCTTCGATCTG
* * *
71453981 CTCTACTGTAACTTCAGAGAGATAAGATCCTG--TCTTCGATCTG
1 CTCCACTGTAACCTCAGGGAGATAAGAT-CTGATTCTTCGATCTG
* * * *
71454024 CTCCGCTGTAACCTCAGGGAGATAAGATCTGAAAGTCTTCGGTCTA
1 CTCCACTGTAACCTCAGGGAGATAAGATCTG--ATTCTTCGATCTG
* * *
71454070 CTCCACTGTAACCTCAGGGAGATAAGACCTGA--C-GCGATCTA
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGATTCTTCGATCTG
** * * * * * **
71454111 CTCTGCTGTAACTTTAGAGAGATAAGATCCTTCATT-TT-AATCCA
1 CTCCACTGTAACCTCAGGGAGATAAGAT-C-TGATTCTTCGATCTG
* * * *
71454155 CTCCACTGTAATCTCAGGGAGATAGGAT-T-ACTAACTTCAATCTG
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGA-T-TCTTCGATCTG
* * *
71454199 CTCCGCTGTAATCTCAGAGAGATAAGATCTGA
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGA
71454231 AATTCTTCAG
Statistics
Matches: 572, Mismatches: 113, Indels: 84
0.74 0.15 0.11
Matches are distributed among these distances:
40 5 0.01
41 123 0.22
42 20 0.03
43 126 0.22
44 145 0.25
45 1 0.00
46 147 0.26
47 5 0.01
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.30
Consensus pattern (44 bp):
CTCCACTGTAACCTCAGGGAGATAAGATCTGATTCTTCGATCTG
Found at i:71453631 original size:87 final size:88
Alignment explanation
Indices: 71453540--71454101 Score: 454
Period size: 87 Copynumber: 6.4 Consensus size: 88
71453530 TAGTGTCTTC
* * * * *
71453540 GATCTGCTCCGCTGTAACCTCAGGGGGATAAGAT-CTGAAATTCTTCGGTCTACTCTACTGTAAC
1 GATCTGCTCCACTGTAACCTCAGAGAGATAAGATCCTGAAATTCTTCGATCTACTCCACTGTAAC
71453604 CTCAGGGAGATAAGACCTGGTGT
66 CTCAGGGAGATAAGACCTGGTGT
* * ** * **
71453627 GATCTGCTCTACTGTAACTTCAGAGAGATAAGATCCT-TTATT-TT-AATCCGCTCCACTGTAAC
1 GATCTGCTCCACTGTAACCTCAGAGAGATAAGATCCTGAAATTCTTCGATCTACTCCACTGTAAC
* * * * *
71453689 TTCAGGGAGATAGGA-TTATGTCTT
66 CTCAGGGAGATAAGACCT-GGT-GT
* * * * *
71453713 CGATTTGCTCCGCTGTAACCTCAGGGAGATAAGAT-CTGAAATTCTTCGGTCTACTCTACTGTAA
1 -GATCTGCTCCACTGTAACCTCAGAGAGATAAGATCCTGAAATTCTTCGATCTACTCCACTGTAA
71453777 CCTCAGGGAGATAAGACCTGGTGT
65 CCTCAGGGAGATAAGACCTGGTGT
* * ** * **
71453801 GATCTGCTCTACTGTAACTTCAGAGAGATAAGATCCT-TTATT-TT-AATCCGCTCCACTGTAAC
1 GATCTGCTCCACTGTAACCTCAGAGAGATAAGATCCTGAAATTCTTCGATCTACTCCACTGTAAC
* * * * * *
71453863 TTCAGGTAGATAGGA-TTATGTCTT
66 CTCAGGGAGATAAGACCT-GGT-GT
* * * * *
71453887 CGATCTGCTCCGCTGTAACCTCAGGGGGATAAGAT-CTGAAATTCTTCGGTCTACTCTACTGTAA
1 -GATCTGCTCCACTGTAACCTCAGAGAGATAAGATCCTGAAATTCTTCGATCTACTCCACTGTAA
*
71453951 CCTCAGGGAGATAAGACCTGATGT
65 CCTCAGGGAGATAAGACCTGGTGT
* * * * *
71453975 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTG----TCTTCGATCTGCTCCGCTGTAAC
1 GATCTGCTCCACTGTAACCTCAGAGAGATAAGATCCTGAAATTCTTCGATCTACTCCACTGTAAC
* *
71454036 CTCAGGGAGATAAGATCTGAAAGTCTT
66 CTCAGGGAGATAAGACCTG---GT-GT
* * *
71454063 CGGTCTACTCCACTGTAACCTCAGGGAGATAAGA-CCTGA
1 -GATCTGCTCCACTGTAACCTCAGAGAGATAAGATCCTGA
71454102 CGCGATCTAC
Statistics
Matches: 364, Mismatches: 88, Indels: 44
0.73 0.18 0.09
Matches are distributed among these distances:
84 39 0.11
85 55 0.15
86 10 0.03
87 157 0.43
88 18 0.05
89 83 0.23
90 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (88 bp):
GATCTGCTCCACTGTAACCTCAGAGAGATAAGATCCTGAAATTCTTCGATCTACTCCACTGTAAC
CTCAGGGAGATAAGACCTGGTGT
Found at i:71453689 original size:44 final size:44
Alignment explanation
Indices: 71453459--71454227 Score: 341
Period size: 44 Copynumber: 17.7 Consensus size: 44
71453449 TTTTAATTTA
* * * * *
71453459 CTCCACTGCAACTTCAGGGAGATAAGAT-CTGTGGTTTTAATCCG
1 CTCCACTGTAACTTCAGGGAGATAAGATCCTAT-ATTTTGATCTG
* * ** * * *
71453503 CTCCGCTGTAACTTCAGGGAGATAGGATAGTGT-CTTCGATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCCTATATTTTGATCTG
* * * * * *
71453546 CTCCGCTGTAACCTCAGGGGGATAAGAT-CTGAAATTCTTCGGTCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCCT-ATATT-TT-GATCTG
* * ** *
71453592 CTCTACTGTAACCTCAGGGAGATAAGA-CC--TGGTGTGATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCCTATATTTTGATCTG
* * * * *
71453633 CTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
1 CTCCACTGTAACTTCAGGGAGATAAGATCCTATATTTTGATCTG
* * * *
71453677 CTCCACTGTAACTTCAGGGAGATAGGAT--TATGTCTTCGATTTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCCTATAT-TTTGATCTG
* * * * *
71453720 CTCCGCTGTAACCTCAGGGAGATAAGAT-CTGAAATTCTTCGGTCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCCT-ATATT-TT-GATCTG
* * ** *
71453766 CTCTACTGTAACCTCAGGGAGATAAGA-CC--TGGTGTGATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCCTATATTTTGATCTG
* * * * *
71453807 CTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
1 CTCCACTGTAACTTCAGGGAGATAAGATCCTATATTTTGATCTG
* * * *
71453851 CTCCACTGTAACTTCAGGTAGATAGGAT--TATGTCTTCGATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCCTATAT-TTTGATCTG
* * * * * *
71453894 CTCCGCTGTAACCTCAGGGGGATAAGAT-CTGAAATTCTTCGGTCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCCT-ATATT-TT-GATCTG
* * * * *
71453940 CTCTACTGTAACCTCAGGGAGATAAGA-CCT-GA-TGTGATCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCCTATATTTTGATCTG
* * * * *
71453981 CTCTACTGTAACTTCAGAGAGATAAGATCCTGT-CTTCGATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCCTATATTTTGATCTG
* * * * * *
71454024 CTCCGCTGTAACCTCAGGGAGATAAGAT-CTGAAAGTCTTCGGTCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCCT-ATA-T-TTTGATCTG
* * *** *
71454070 CTCCACTGTAACCTCAGGGAGATAAGA-CCT-GA-CGCGATCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCCTATATTTTGATCTG
** * * * **
71454111 CTCTGCTGTAACTTTAGAGAGATAAGATCCT-TCATTTTAATCCA
1 CTCCACTGTAACTTCAGGGAGATAAGATCCTAT-ATTTTGATCTG
* * * **
71454155 CTCCACTGTAA-TCTCAGGGAGATAGGATTACTA-ACTTCAATCTG
1 CTCCACTGTAACT-TCAGGGAGATAAGA-TCCTATATTTTGATCTG
* *
71454199 CTCCGCTGTAA-TCTCAGAGAGATAAGATC
1 CTCCACTGTAACT-TCAGGGAGATAAGATC
71454228 TGAAATTCTT
Statistics
Matches: 550, Mismatches: 137, Indels: 77
0.72 0.18 0.10
Matches are distributed among these distances:
41 116 0.21
42 22 0.04
43 126 0.23
44 150 0.27
45 13 0.02
46 123 0.22
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.30
Consensus pattern (44 bp):
CTCCACTGTAACTTCAGGGAGATAAGATCCTATATTTTGATCTG
Found at i:71453758 original size:174 final size:174
Alignment explanation
Indices: 71453463--71454101 Score: 996
Period size: 174 Copynumber: 3.7 Consensus size: 174
71453453 AATTTACTCC
* * ** *
71453463 ACTGCAACTTCAGGGAGATAAGAT-CTGTGGTTTTAATCCGCTCCGCTGTAACTTCAGGGAGATA
1 ACTGTAACTTCAGAGAGATAAGATCCT-TTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATA
*
71453527 GGA-TAGTGTCTTCGATCTGCTCCGCTGTAACCTCAGGGGGATAAGATCTGAAATTCTTCGGTCT
65 GGATTA-TGTCTTCGATCTGCTCCGCTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCT
71453591 ACTCTACTGTAACCTCAGGGAGATAAGACCTGGTGTGATCTGCTCT
129 ACTCTACTGTAACCTCAGGGAGATAAGACCTGGTGTGATCTGCTCT
71453637 ACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAG
1 ACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAG
*
71453702 GATTATGTCTTCGATTTGCTCCGCTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTAC
66 GATTATGTCTTCGATCTGCTCCGCTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTAC
71453767 TCTACTGTAACCTCAGGGAGATAAGACCTGGTGTGATCTGCTCT
131 TCTACTGTAACCTCAGGGAGATAAGACCTGGTGTGATCTGCTCT
*
71453811 ACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGTAGATAG
1 ACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAG
*
71453876 GATTATGTCTTCGATCTGCTCCGCTGTAACCTCAGGGGGATAAGATCTGAAATTCTTCGGTCTAC
66 GATTATGTCTTCGATCTGCTCCGCTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTAC
* *
71453941 TCTACTGTAACCTCAGGGAGATAAGACCTGATGTGATCTACTCT
131 TCTACTGTAACCTCAGGGAGATAAGACCTGGTGTGATCTGCTCT
* * ** * * * *
71453985 ACTGTAACTTCAGAGAGATAAGATCCTGT-CTTCGATCTGCTCCGCTGTAACCTCAGGGAGATAA
1 ACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAG
* * * * *
71454049 GATCTGAAAGTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGA
66 GAT-T--ATGTCTTCGATCTGCTCCGCTGTAACCTCAGGGAGATAAGATCTGA
71454102 CGCGATCTAC
Statistics
Matches: 433, Mismatches: 27, Indels: 8
0.93 0.06 0.02
Matches are distributed among these distances:
173 30 0.07
174 359 0.83
175 4 0.01
176 40 0.09
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (174 bp):
ACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAG
GATTATGTCTTCGATCTGCTCCGCTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTAC
TCTACTGTAACCTCAGGGAGATAAGACCTGGTGTGATCTGCTCT
Found at i:71454019 original size:130 final size:130
Alignment explanation
Indices: 71453855--71454141 Score: 468
Period size: 130 Copynumber: 2.2 Consensus size: 130
71453845 AATCCGCTCC
* ** *
71453855 ACTGTAACTTCAG-GTAGATAGGATTATGTCTTCGATCTGCTCCGCTGTAACCTCAGGGGGATAA
1 ACTGTAACTTCAGAG-AGATAAGATCCTGTCTTCGATCTGCTCCGCTGTAACCTCAGGGAGATAA
* * * *
71453919 GATCTGAAATTCTTCGGTCTACTCTACTGTAACCTCAGGGAGATAAGACCTGATGTGATCTACTC
65 GATCTGAAAGTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGACGCGATCTACTC
71453984 T
130 T
71453985 ACTGTAACTTCAGAGAGATAAGATCCTGTCTTCGATCTGCTCCGCTGTAACCTCAGGGAGATAAG
1 ACTGTAACTTCAGAGAGATAAGATCCTGTCTTCGATCTGCTCCGCTGTAACCTCAGGGAGATAAG
71454050 ATCTGAAAGTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGACGCGATCTACTCT
66 ATCTGAAAGTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGACGCGATCTACTCT
* *
71454115 GCTGTAACTTTAGAGAGATAAGATCCT
1 ACTGTAACTTCAGAGAGATAAGATCCT
71454142 TCATTTTAAT
Statistics
Matches: 146, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
130 145 0.99
131 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (130 bp):
ACTGTAACTTCAGAGAGATAAGATCCTGTCTTCGATCTGCTCCGCTGTAACCTCAGGGAGATAAG
ATCTGAAAGTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGACGCGATCTACTCT
Found at i:71454044 original size:304 final size:305
Alignment explanation
Indices: 71453681--71454238 Score: 895
Period size: 304 Copynumber: 1.8 Consensus size: 305
71453671 AATCCGCTCC
* * * *
71453681 ACTGTAACTTCAGGGAGATAGGATTATGTCTTCGATTTGCTCCGCTGTAACCTCAGGGAGATAAG
1 ACTGTAACTTCAGAGAGATAAGATCATGTCTTCGATCTGCTCCGCTGTAACCTCAGGGAGATAAG
* * ** * *
71453746 ATCTGAAATTCTTCGGTCTACTCTACTGTAACCTCAGGGAGATAAGACCTGGTGTGATCTGCTCT
66 ATCTGAAAGTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGACGCGATCTACTCT
* * *
71453811 ACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAA-CTTCAGGTAGATA
131 ACTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATC-TCAGGGAGATA
** * * *
71453875 GGATTA-TGTCTTCGATCTGCTCCGCTGTAACCTCAGGGGGATAAGATCTGAAATTCTTCGGTCT
195 GGATTACTAACTTCAATCTGCTCCGCTGTAACCTCAGAGAGATAAGATCTGAAATTCTTCGGTCT
71453939 ACTCTACTGTAACCTCAGGGAGATAAGACCTGATGTGATCTACTCT
260 ACTCTACTGTAACCTCAGGGAGATAAGACCTGATGTGATCTACTCT
*
71453985 ACTGTAACTTCAGAGAGATAAGATCCTGTCTTCGATCTGCTCCGCTGTAACCTCAGGGAGATAAG
1 ACTGTAACTTCAGAGAGATAAGATCATGTCTTCGATCTGCTCCGCTGTAACCTCAGGGAGATAAG
71454050 ATCTGAAAGTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGACGCGATCTACTCT
66 ATCTGAAAGTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGACGCGATCTACTCT
* *
71454115 GCTGTAACTTTAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAG
131 ACTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAG
*
71454180 GATTACTAACTTCAATCTGCTCCGCTGTAATCTCAGAGAGATAAGATCTGAAATTCTTC
196 GATTACTAACTTCAATCTGCTCCGCTGTAACCTCAGAGAGATAAGATCTGAAATTCTTC
71454239 AGCCAGCTCC
Statistics
Matches: 230, Mismatches: 22, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
304 182 0.79
305 48 0.21
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (305 bp):
ACTGTAACTTCAGAGAGATAAGATCATGTCTTCGATCTGCTCCGCTGTAACCTCAGGGAGATAAG
ATCTGAAAGTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGACGCGATCTACTCT
ACTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAG
GATTACTAACTTCAATCTGCTCCGCTGTAACCTCAGAGAGATAAGATCTGAAATTCTTCGGTCTA
CTCTACTGTAACCTCAGGGAGATAAGACCTGATGTGATCTACTCT
Found at i:71454138 original size:87 final size:89
Alignment explanation
Indices: 71453977--71454238 Score: 237
Period size: 87 Copynumber: 3.0 Consensus size: 89
71453967 CCTGATGTGA
* * * * * *
71453977 TCTACTCTACTGTAACTTCAGAGAGATAAGATCCTGTCTTCGATCTGCTCCGCTGTAACCTCAGG
1 TCTACTCCACTGTAACCTCAGAGAGATAAGATCCTGACTGCGATCTACTCCGCTGTAACCTCAGA
71454042 GAGATAAGATCTGAAAGTCTTCGG
66 GAGATAAGATCTGAAAGTCTTCGG
* * * *
71454066 TCTACTCCACTGTAACCTCAGGGAGATAAGA-CCTGAC-GCGATCTACTCTGCTGTAACTTTAGA
1 TCTACTCCACTGTAACCTCAGAGAGATAAGATCCTGACTGCGATCTACTCCGCTGTAACCTCAGA
** ***
71454129 GAGATAAGATCCT-TCA-T-TTTAA
66 GAGATAAGAT-CTGAAAGTCTTCGG
* * * * * * * * * *
71454151 TCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAG
1 TCTACTCCACTGTAACCTCAGAGAGATAAGA-TCCTGACTGCGATCTACTCCGCTGTAACCTCAG
*
71454216 AGAGATAAGATCTGAAATTCTTC
65 AGAGATAAGATCTGAAAGTCTTC
71454239 AGCCAGCTCC
Statistics
Matches: 136, Mismatches: 30, Indels: 13
0.76 0.17 0.07
Matches are distributed among these distances:
85 30 0.22
86 1 0.01
87 37 0.27
88 37 0.27
89 29 0.21
90 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (89 bp):
TCTACTCCACTGTAACCTCAGAGAGATAAGATCCTGACTGCGATCTACTCCGCTGTAACCTCAGA
GAGATAAGATCTGAAAGTCTTCGG
Found at i:71454165 original size:348 final size:346
Alignment explanation
Indices: 71453449--71454178 Score: 988
Period size: 348 Copynumber: 2.1 Consensus size: 346
71453439 AAGTTTATGG
* * * *
71453449 TTTTAATTTACTCCACTGCAACTTCAGGGAGATAAGATCTGTGGTTTTAATCCGCTCCGCTGTAA
1 TTTTAATCTACTCCACTGTAACTTCAGGGAGATAAGATCTGTGATTTTAATCCGCTCCACTGTAA
71453514 CTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAACCTCAGGGGGATAAGATCTGAA
66 CTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAACCTCAGGGGGATAAGATCTGAA
* *
71453579 ATTCTTCGGTCTACTCTACTGTAACCTCAGGGAGATAAGACCTGGTGTGATCTGCTCTACTGTAA
131 ATTCTTCGGTCTACTCTACTGTAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTACTGTAA
* * * * * *
71453644 CTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTATG
196 CTTCAGAGAGATAAGATCCTGTACTTCAATCCGCTCCACTGTAACCTCAGGGAGATAAGATTAAG
* * * * * *
71453709 TCTTCGATTTGCTCCGCTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCTACTG
261 TCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTG-AA-TCTGCGATCTACTCTACTG
* *
71453774 TAACCTCAGGGAGATAAGACCTG
324 TAACCTCAGAGAGATAAGACCTA
* * * * * * *
71453797 GTGTGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCCT-TTATTTTAATCCGCTCCACTGTA
1 TTTTAATCTACTCCACTGTAACTTCAGGGAGATAAGAT-CTGTGATTTTAATCCGCTCCACTGTA
*
71453861 ACTTCAGGTAGATAGGATTA-TGTCTTCGATCTGCTCCGCTGTAACCTCAGGGGGATAAGATCTG
65 ACTTCAGGGAGATAGGA-TAGTGTCTTCGATCTGCTCCGCTGTAACCTCAGGGGGATAAGATCTG
71453925 AAATTCTTCGGTCTACTCTACTGTAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTACTGT
129 AAATTCTTCGGTCTACTCTACTGTAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTACTGT
* * *
71453990 AACTTCAGAGAGATAAGATCCTGT-CTTCGATCTGCTCCGCTGTAACCTCAGGGAGATAAGATCT
194 AACTTCAGAGAGATAAGATCCTGTACTTCAATCCGCTCCACTGTAACCTCAGGGAGATAAGAT-T
* *
71454054 GAAAGTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTG-A-C-GCGATCTACTCTG
258 --AAGTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGAATCTGCGATCTACTCTA
* *
71454116 CTGTAACTTTAGAGAGATAAGATCCTTCA
321 CTGTAACCTCAGAGAGATAAGA-CC-T-A
*
71454145 TTTTAATCCACTCCACTGTAA-TCTCAGGGAGATA
1 TTTTAATCTACTCCACTGTAACT-TCAGGGAGATA
71454179 GGATTACTAA
Statistics
Matches: 331, Mismatches: 42, Indels: 18
0.85 0.11 0.05
Matches are distributed among these distances:
345 29 0.09
346 3 0.01
347 33 0.10
348 223 0.67
349 4 0.01
350 39 0.12
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (346 bp):
TTTTAATCTACTCCACTGTAACTTCAGGGAGATAAGATCTGTGATTTTAATCCGCTCCACTGTAA
CTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAACCTCAGGGGGATAAGATCTGAA
ATTCTTCGGTCTACTCTACTGTAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTACTGTAA
CTTCAGAGAGATAAGATCCTGTACTTCAATCCGCTCCACTGTAACCTCAGGGAGATAAGATTAAG
TCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGAATCTGCGATCTACTCTACTGTA
ACCTCAGAGAGATAAGACCTA
Found at i:71454342 original size:86 final size:86
Alignment explanation
Indices: 71454241--71454892 Score: 807
Period size: 86 Copynumber: 7.5 Consensus size: 86
71454231 AATTCTTCAG
* * * * * * * *
71454241 CCAGCTCCACTACAACCGA-GAGAGGTAAGG-TTCGTCTTCGACCTGCTTCGCTGTCAATGCAGG
1 CCAGCTCCACTGCAACCAATGA-AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGG
** *
71454304 AAGGCAAGATCTTTTGTCTTCAA
65 AAGGCAAGATCTGCT-TCTTTAA
* * * * ** * * * *
71454327 CCAGCTCCA-TCACAACCGA-GAGAGGCAAGG-TTTGTGTCTTTGACCTATTTCACCGTCAATGC
1 CCAGCTCCACT-GCAACCAATGA-AGGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAACGC
** *
71454389 AGGAAGGCAAGATCTTTTGTCTTCAA
62 AGGAAGGCAAGATCTGCT-TCTTTAA
* * * * * * *
71454415 CCAGCTCCA-TCACAACCGA-GAGAGGCAAGG-TTTGTGTCTTTGACCTGCTTCGCCGTCAATGC
1 CCAGCTCCACT-GCAACCAATGA-AGGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAACGC
**
71454477 AGGAAGGCAAGATCTTTTGTCTTTAA
62 AGGAAGGCAAGATCTGCT-TCTTTAA
*
71454503 CCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTTGCTGTTAACGCAGGA
1 CCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
71454568 AGGCAAGATCTGCTTCTTTAA
66 AGGCAAGATCTGCTTCTTTAA
71454589 CCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
1 CCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
71454654 AGGCAAGATCTGCTTCTTTAA
66 AGGCAAGATCTGCTTCTTTAA
71454675 CCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
1 CCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
71454740 AGGCAAGATCTGCTTCTTTAA
66 AGGCAAGATCTGCTTCTTTAA
71454761 CCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
1 CCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
71454826 AGGCAAGATCTGCTATCTTTAA
66 AGGCAAGATCTGCT-TCTTTAA
* *
71454848 CCAGCTCCACTGCAACTAATGAAGGCAAGGCTTTATTTTCGATCT
1 CCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCT
71454893 TCACTGATCT
Statistics
Matches: 534, Mismatches: 25, Indels: 13
0.93 0.04 0.02
Matches are distributed among these distances:
85 1 0.00
86 288 0.54
87 84 0.16
88 153 0.29
89 8 0.01
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (86 bp):
CCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
AGGCAAGATCTGCTTCTTTAA
Found at i:71454354 original size:44 final size:44
Alignment explanation
Indices: 71454305--71454443 Score: 133
Period size: 44 Copynumber: 3.2 Consensus size: 44
71454295 CAATGCAGGA
71454305 AGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 AGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
* * ** * * * * *
71454349 AGGCAAGGT-TTGTGTCTTTGACCTA-TTTCACCGTCAA-TGCAG-G
1 AGGCAAGATCTTTTGTCTTCAACC-AGCTCCATC-ACAACCG-AGAG
71454392 AAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 -AGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
71454437 AGGCAAG
1 AGGCAAG
71454444 GTTTGTGTCT
Statistics
Matches: 69, Mismatches: 18, Indels: 16
0.67 0.17 0.16
Matches are distributed among these distances:
43 17 0.25
44 35 0.51
45 17 0.25
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (44 bp):
AGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
Found at i:71454485 original size:44 final size:43
Alignment explanation
Indices: 71454349--71454487 Score: 113
Period size: 44 Copynumber: 3.2 Consensus size: 43
71454339 CAACCGAGAG
**
71454349 AGGCAAGGTTTGTGTCTTTGACCTATTTCACCGTCAATGCAGGA
1 AGGCAAGGTTTGTGTCTTTGACCTGCTTC-CCGTCAATGCAGGA
* * ** * * * *
71454393 AGGCAAGATCTTTTGTCTTCAACCAGC-T-CCATCACA-ACCGAGA
1 AGGCAAGGT-TTGTGTCTTTGACCTGCTTCCCGTCA-ATGCAG-GA
71454436 GAGGCAAGGTTTGTGTCTTTGACCTGCTTCGCCGTCAATGCAGGA
1 -AGGCAAGGTTTGTGTCTTTGACCTGCTTC-CCGTCAATGCAGGA
71454481 AGGCAAG
1 AGGCAAG
71454488 ATCTTTTGTC
Statistics
Matches: 69, Mismatches: 18, Indels: 16
0.67 0.17 0.16
Matches are distributed among these distances:
42 7 0.10
43 16 0.23
44 25 0.36
45 14 0.20
46 7 0.10
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (43 bp):
AGGCAAGGTTTGTGTCTTTGACCTGCTTCCCGTCAATGCAGGA
Found at i:71454574 original size:43 final size:43
Alignment explanation
Indices: 71454523--71454832 Score: 197
Period size: 43 Copynumber: 7.2 Consensus size: 43
71454513 TGCAACCAAT
*
71454523 GAAGGCAAGGCTTTGTTTTCGATCTGCTTTGCTGTTAACGCAG
1 GAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAG
* * ** * * * * * *
71454566 GAAGGCAA-GATCTGCTTCTTTAACCAGCTCCACTG-CAAC-CAAT
1 GAAGGCAAGGCTTTG-TT-TTCGATCTGCTTCGCTGTTAACGC-AG
71454609 GAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAG
1 GAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAG
* * ** * * * * * *
71454652 GAAGGCAA-GATCTGCTTCTTTAACCAGCTCCACTG-CAAC-CAAT
1 GAAGGCAAGGCTTTG-TT-TTCGATCTGCTTCGCTGTTAACGC-AG
71454695 GAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAG
1 GAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAG
* * ** * * * * * *
71454738 GAAGGCAA-GATCTGCTTCTTTAACCAGCTCCACTG-CAAC-CAAT
1 GAAGGCAAGGCTTTG-TT-TTCGATCTGCTTCGCTGTTAACGC-AG
71454781 GAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAG
1 GAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAG
71454824 GAAGGCAAG
1 GAAGGCAAG
71454833 ATCTGCTATC
Statistics
Matches: 188, Mismatches: 61, Indels: 36
0.66 0.21 0.13
Matches are distributed among these distances:
42 48 0.26
43 93 0.49
44 47 0.25
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (43 bp):
GAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAG
Found at i:71456961 original size:11 final size:11
Alignment explanation
Indices: 71456945--71456969 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
71456935 CTTTGGCCTC
71456945 TTCTTTTCTTT
1 TTCTTTTCTTT
71456956 TTCTTTTCTTT
1 TTCTTTTCTTT
71456967 TTC
1 TTC
71456970 ATTCTGATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (11 bp):
TTCTTTTCTTT
Found at i:71460623 original size:110 final size:109
Alignment explanation
Indices: 71460443--71460731 Score: 429
Period size: 110 Copynumber: 2.7 Consensus size: 109
71460433 GTTAAACGAG
*
71460443 AAATCGAAACCCAGCACCTTAGGGCACG-TTCCTCGAATTTCCAAACGCAAAACATTGCCTTATT
1 AAATCGAAACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
71460507 TTGAAATTTTA-AGAAGGATATTAAGCCATTTAGTTGAACGAGAA
66 TTGAAATTTTAGA-AAGGATATTAAGCCATTTAGTTGAACGAGAA
* * *
71460551 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCTAAACGGCAAAACATTGCCTTAT
1 AAATCGAAACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAAC-GCAAAACATTGCCTTAT
* * * *
71460616 TTTGAAATTTTTGAAAGGATATTTAGCTATTTGGTTGAACGAGAA
65 TTTGAAATTTTAGAAAGGATATTAAGCCATTTAGTTGAACGAGAA
* * * *
71460661 AAATCAAAACCCAGCACATTAGGGCACGTTTTCTCGAATTTCCAAAAGCTAAACATTGCCTTATT
1 AAATCGAAACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
*
71460726 TAGAAA
66 TTGAAA
71460732 AATTTTCCTT
Statistics
Matches: 162, Mismatches: 16, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
108 26 0.16
109 38 0.23
110 97 0.60
111 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (109 bp):
AAATCGAAACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
TTGAAATTTTAGAAAGGATATTAAGCCATTTAGTTGAACGAGAA
Found at i:71466111 original size:2 final size:2
Alignment explanation
Indices: 71466104--71466128 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
71466094 ATCATCTACA
71466104 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
71466129 AGTATTATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:71472095 original size:31 final size:31
Alignment explanation
Indices: 71472037--71472099 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
71472027 AAAAAATTAT
* *
71472037 TGAATTATTCAAAAATTTTTATTTAAGTCAC
1 TGAACTATTCAAAAATTTTTATCTAAGTCAC
* *
71472068 TGAACTATTTAAAAGTTTTTATCTAAGTCAC
1 TGAACTATTCAAAAATTTTTATCTAAGTCAC
71472099 T
1 T
71472100 ACTTTGTTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.37, C:0.11, G:0.08, T:0.44
Consensus pattern (31 bp):
TGAACTATTCAAAAATTTTTATCTAAGTCAC
Found at i:71474106 original size:28 final size:28
Alignment explanation
Indices: 71474063--71474118 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
71474053 ATCATGTTGT
*
71474063 TCATGAGGACAGTCAGATATATATAAAG
1 TCATGAGGACAATCAGATATATATAAAG
71474091 TCATGAGGACAATCAGATATATATAAAG
1 TCATGAGGACAATCAGATATATATAAAG
71474119 AAAAGGTATG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.45, C:0.11, G:0.20, T:0.25
Consensus pattern (28 bp):
TCATGAGGACAATCAGATATATATAAAG
Found at i:71479096 original size:22 final size:21
Alignment explanation
Indices: 71479071--71479119 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 21
71479061 TATATTAAAT
* *
71479071 ATATAATAATACTTTAATATAA
1 ATATAA-AATAATGTAATATAA
71479093 ATATTAAAATAATGTAATATAA
1 ATA-TAAAATAATGTAATATAA
71479115 ATATA
1 ATATA
71479120 TTTTTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 2 0.08
22 19 0.79
23 3 0.12
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (21 bp):
ATATAAAATAATGTAATATAA
Found at i:71487388 original size:20 final size:20
Alignment explanation
Indices: 71487354--71487395 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
71487344 AACTATTCAA
** *
71487354 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
71487374 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
71487394 AT
1 AT
71487396 GTGTTTAGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:71488131 original size:54 final size:54
Alignment explanation
Indices: 71488067--71488176 Score: 211
Period size: 54 Copynumber: 2.0 Consensus size: 54
71488057 GACAATGAAA
*
71488067 GTGGAAATTAAAGAGGTCCCAGTCCATGAAATTATTGCACCCTCCCAAGTGGTT
1 GTGGAAATTAAAGAGGTCCCAGTCCATGAAATTATTGCACCCTCCCAAATGGTT
71488121 GTGGAAATTAAAGAGGTCCCAGTCCATGAAATTATTGCACCCTCCCAAATGGTT
1 GTGGAAATTAAAGAGGTCCCAGTCCATGAAATTATTGCACCCTCCCAAATGGTT
71488175 GT
1 GT
71488177 TGATGGGAAA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (54 bp):
GTGGAAATTAAAGAGGTCCCAGTCCATGAAATTATTGCACCCTCCCAAATGGTT
Found at i:71488479 original size:20 final size:20
Alignment explanation
Indices: 71488433--71488481 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
71488423 AAAATTTTAT
*
71488433 TTTTTTATATTTTTAACAATA
1 TTTTTTA-ATTTTTAAAAATA
**
71488454 AATTTTAATTTTTAAAAATA
1 TTTTTTAATTTTTAAAAATA
71488474 TTTTTTAA
1 TTTTTTAA
71488482 AAATTTAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
20 18 0.78
21 5 0.22
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTTTTAATTTTTAAAAATA
Found at i:71507134 original size:33 final size:32
Alignment explanation
Indices: 71507097--71507158 Score: 106
Period size: 33 Copynumber: 1.9 Consensus size: 32
71507087 TTTATTGGGT
*
71507097 ACGGTTCGATTTAATTTTATGATAACATAAGGA
1 ACGGTTCGACTTAATTTTATGATAA-ATAAGGA
71507130 ACGGTTCGACTTAATTTTATGATAAATAA
1 ACGGTTCGACTTAATTTTATGATAAATAA
71507159 TTATGGTATG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
32 4 0.14
33 24 0.86
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (32 bp):
ACGGTTCGACTTAATTTTATGATAAATAAGGA
Found at i:71515083 original size:32 final size:32
Alignment explanation
Indices: 71515047--71515109 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
71515037 ATTAGCTCTC
71515047 TTAAA-TTTTTGAAAATTT-TGTATTATGCCCCT
1 TTAAAGTTTTT-AAAATTTAT-TATTATGCCCCT
*
71515079 TTAAAGTTTTTAGAATTTATTATTATGCCCC
1 TTAAAGTTTTTAAAATTTATTATTATGCCCC
71515110 AAAATTTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
32 22 0.79
33 6 0.21
ACGTcount: A:0.29, C:0.13, G:0.10, T:0.49
Consensus pattern (32 bp):
TTAAAGTTTTTAAAATTTATTATTATGCCCCT
Found at i:71515117 original size:29 final size:30
Alignment explanation
Indices: 71515049--71515122 Score: 80
Period size: 32 Copynumber: 2.4 Consensus size: 30
71515039 TAGCTCTCTT
*
71515049 AAATTTTTGAAAATTTTGTATTATGCCCCTTTA
1 AAATTTTT-AGAATTTTGTATTATGCCCC--TA
*
71515082 AAGTTTTTAGAATTTAT-TATTATGCCCC-A
1 AAATTTTTAGAATTT-TGTATTATGCCCCTA
71515111 AAATTTTTAGAA
1 AAATTTTTAGAA
71515123 ACTCGCGTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
29 12 0.32
32 17 0.46
33 8 0.22
ACGTcount: A:0.34, C:0.11, G:0.09, T:0.46
Consensus pattern (30 bp):
AAATTTTTAGAATTTTGTATTATGCCCCTA
Found at i:71516867 original size:18 final size:18
Alignment explanation
Indices: 71516837--71516871 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
71516827 TAATATTTAT
71516837 TTTATTAATATATAAAAA
1 TTTATTAATATATAAAAA
71516855 TTTATATAA-ATATAAAA
1 TTTAT-TAATATATAAAA
71516872 TTATTGATAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
TTTATTAATATATAAAAA
Found at i:71523286 original size:24 final size:24
Alignment explanation
Indices: 71523258--71523319 Score: 79
Period size: 24 Copynumber: 2.6 Consensus size: 24
71523248 AAAATAGGAC
*
71523258 TTAATATTTTTGTTGTTTAACGGT
1 TTAATACTTTTGTTGTTTAACGGT
* *
71523282 TTAATCCTTTTGTTGTTTATCGGT
1 TTAATACTTTTGTTGTTTAACGGT
* *
71523306 TTAGTCCTTTTGTT
1 TTAATACTTTTGTT
71523320 TGAAGTGAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.15, C:0.10, G:0.16, T:0.60
Consensus pattern (24 bp):
TTAATACTTTTGTTGTTTAACGGT
Found at i:71530821 original size:21 final size:22
Alignment explanation
Indices: 71530792--71530838 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
71530782 CAGAAGGAGT
*
71530792 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
71530814 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
71530835 GAGT
1 GAGT
71530839 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:71534779 original size:12 final size:11
Alignment explanation
Indices: 71534741--71534787 Score: 53
Period size: 11 Copynumber: 4.3 Consensus size: 11
71534731 TTGTTTGTAC
71534741 TTTATATTATA
1 TTTATATTATA
*
71534752 TTTGTGATTATA
1 TTTAT-ATTATA
71534764 -TTATATTCATA
1 TTTATATT-ATA
71534775 TTTATA-TATA
1 TTTATATTATA
71534785 TTT
1 TTT
71534788 TTTTAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
10 9 0.29
11 11 0.35
12 11 0.35
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (11 bp):
TTTATATTATA
Found at i:71534779 original size:17 final size:18
Alignment explanation
Indices: 71534741--71534786 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
71534731 TTGTTTGTAC
**
71534741 TTTATATTATATTTGTGA
1 TTTATATTATATTCATGA
71534759 -TTATATTATATTCAT-A
1 TTTATATTATATTCATGA
71534775 TTTATA-TATATT
1 TTTATATTATATT
71534787 TTTTTAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
16 7 0.28
17 18 0.72
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (18 bp):
TTTATATTATATTCATGA
Found at i:71535392 original size:14 final size:14
Alignment explanation
Indices: 71535375--71535439 Score: 62
Period size: 14 Copynumber: 4.6 Consensus size: 14
71535365 TACAATATCT
*
71535375 AAATAATAATAATA
1 AAATAATAACAATA
71535389 AAATAATAACAATA
1 AAATAATAACAATA
* *
71535403 TAATAATGA-AATA
1 AAATAATAACAATA
*
71535416 ACAGTAA-AACAATGA
1 A-AATAATAACAAT-A
71535431 AAATAATAA
1 AAATAATAA
71535440 AAAACAATAA
Statistics
Matches: 40, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
13 5 0.12
14 31 0.77
15 4 0.10
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.23
Consensus pattern (14 bp):
AAATAATAACAATA
Found at i:71535415 original size:19 final size:19
Alignment explanation
Indices: 71535393--71535447 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
71535383 ATAATAAAAT
* *
71535393 AATAACAATATAATAATGA
1 AATAACAATAAAACAATGA
*
71535412 AATAACAGTAAAACAATGAA
1 AATAACAATAAAACAATG-A
*
71535432 AATAATAA-AAAACAAT
1 AATAACAATAAAACAAT
71535448 AACAATATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
19 23 0.77
20 7 0.23
ACGTcount: A:0.67, C:0.07, G:0.05, T:0.20
Consensus pattern (19 bp):
AATAACAATAAAACAATGA
Found at i:71538764 original size:19 final size:20
Alignment explanation
Indices: 71538740--71538782 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
71538730 CTCTTTCTCA
71538740 AAAAAAATTACAAAAA-TTC
1 AAAAAAATTACAAAAATTTC
*
71538759 AAAAAAATTATAAAAATTTC
1 AAAAAAATTACAAAAATTTC
71538779 AAAA
1 AAAA
71538783 TTTACATTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (20 bp):
AAAAAAATTACAAAAATTTC
Found at i:71550494 original size:18 final size:20
Alignment explanation
Indices: 71550465--71550503 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
71550455 GCAGTACTAA
71550465 ACATTCTTAAATT-ATCTCT
1 ACATTCTTAAATTGATCTCT
71550484 ACATT-TTAAATTGATCTCT
1 ACATTCTTAAATTGATCTCT
71550503 A
1 A
71550504 AACTTTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.33, C:0.18, G:0.03, T:0.46
Consensus pattern (20 bp):
ACATTCTTAAATTGATCTCT
Found at i:71550510 original size:19 final size:18
Alignment explanation
Indices: 71550471--71550512 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
71550461 CTAAACATTC
* *
71550471 TTAAATTATCTCTACATT
1 TTAAATTATCTCTAAACT
71550489 TTAAATTGATCTCTAAACT
1 TTAAATT-ATCTCTAAACT
71550508 TTAAA
1 TTAAA
71550513 ATATTTTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.38, C:0.14, G:0.02, T:0.45
Consensus pattern (18 bp):
TTAAATTATCTCTAAACT
Found at i:71552559 original size:21 final size:21
Alignment explanation
Indices: 71552535--71552584 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
71552525 GAATCTTTAA
71552535 GCTTAAACAGATAATCTAACC
1 GCTTAAACAGATAATCTAACC
71552556 GCTTAAACAGATAATCTAACC
1 GCTTAAACAGATAATCTAACC
*
71552577 -CATAAACA
1 GCTTAAACA
71552585 AATCTGCTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
20 7 0.25
21 21 0.75
ACGTcount: A:0.46, C:0.24, G:0.08, T:0.22
Consensus pattern (21 bp):
GCTTAAACAGATAATCTAACC
Found at i:71553718 original size:18 final size:18
Alignment explanation
Indices: 71553692--71553726 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
71553682 CTCTTTATAT
*
71553692 TATACAGAAATATAAAAC
1 TATAAAGAAATATAAAAC
*
71553710 TATAAAGAAGTATAAAA
1 TATAAAGAAATATAAAA
71553727 TACTCTTCTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.63, C:0.06, G:0.09, T:0.23
Consensus pattern (18 bp):
TATAAAGAAATATAAAAC
Found at i:71557193 original size:13 final size:13
Alignment explanation
Indices: 71557175--71557251 Score: 127
Period size: 13 Copynumber: 5.9 Consensus size: 13
71557165 AGTTCTTCAT
71557175 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
71557188 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
* * *
71557201 TACTTTTCAGAAA
1 TGCTTTTGAGAAG
71557214 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
71557227 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
71557240 TGCTTTTGAGAA
1 TGCTTTTGAGAA
71557252 ATTTGAGTGT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 58 1.00
ACGTcount: A:0.26, C:0.09, G:0.26, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:71557229 original size:39 final size:39
Alignment explanation
Indices: 71557175--71557253 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
71557165 AGTTCTTCAT
71557175 TGCTTTTGAGAAGTGCTTTTGAGAAGTACTTTTCAGAAA
1 TGCTTTTGAGAAGTGCTTTTGAGAAGTACTTTTCAGAAA
* *
71557214 TGCTTTTGAGAAGTGCTTTTGAGAAGTGCTTTTGAGAAA
1 TGCTTTTGAGAAGTGCTTTTGAGAAGTACTTTTCAGAAA
71557253 T
1 T
71557254 TTGAGTGTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.27, C:0.09, G:0.25, T:0.39
Consensus pattern (39 bp):
TGCTTTTGAGAAGTGCTTTTGAGAAGTACTTTTCAGAAA
Found at i:71557914 original size:22 final size:23
Alignment explanation
Indices: 71557885--71557952 Score: 72
Period size: 22 Copynumber: 3.0 Consensus size: 23
71557875 ATGGCATACT
71557885 TATATTTGATAAGCATATGAAAA
1 TATATTTGATAAGCATATGAAAA
* *
71557908 TA-ATTTGATTA--ATAT-AATACT
1 TATATTTGATAAGCATATGAA-A-A
71557929 TATATTTGATAAGCATATGAAAA
1 TATATTTGATAAGCATATGAAAA
71557952 T
1 T
71557953 GAAAGTCGAG
Statistics
Matches: 35, Mismatches: 4, Indels: 12
0.69 0.08 0.24
Matches are distributed among these distances:
19 2 0.06
20 5 0.14
21 2 0.06
22 16 0.46
23 3 0.09
24 5 0.14
25 2 0.06
ACGTcount: A:0.46, C:0.04, G:0.10, T:0.40
Consensus pattern (23 bp):
TATATTTGATAAGCATATGAAAA
Found at i:71558937 original size:12 final size:12
Alignment explanation
Indices: 71558920--71558944 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
71558910 CTCTATACCT
71558920 CAAAAACTAAAG
1 CAAAAACTAAAG
71558932 CAAAAACTAAAG
1 CAAAAACTAAAG
71558944 C
1 C
71558945 TGATATACTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.64, C:0.20, G:0.08, T:0.08
Consensus pattern (12 bp):
CAAAAACTAAAG
Found at i:71579403 original size:17 final size:18
Alignment explanation
Indices: 71579370--71579408 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
71579360 TTTTAAGAAG
*
71579370 TATTTTTGGGATAAAAAA
1 TATTTTTGAGATAAAAAA
71579388 TATTTTTGAGAT-AAAAA
1 TATTTTTGAGATAAAAAA
71579405 TATT
1 TATT
71579409 GCTAAACAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.44
Consensus pattern (18 bp):
TATTTTTGAGATAAAAAA
Found at i:71592986 original size:117 final size:115
Alignment explanation
Indices: 71592887--71593111 Score: 316
Period size: 115 Copynumber: 2.0 Consensus size: 115
71592877 TTTTTTCATA
* * *
71592887 GAAAATTTAAATAAATTAATTTCAT-TTTTTCTAACAAATTTTATTATAAAATATGATT-AAGTA
1 GAAAATTTAAACAAATTAATTTCATATTTTTCTAACAAATATTAGTATAAAATATGATTAAAGTA
* *
71592950 TCATATTATAAAAAAATTACTTACAAAACAATTTAATTTTTCTGAATAAT
66 TAATATTATAAAAAAATTACTTAAAAAACAATTTAATTTTTCTGAATAAT
* * *
71593000 GAAATTTTTAACAAATTAATTTGATCATTTTTCTAACAAATATTAGTATAAAATATGATTAAAAG
1 GAAAATTTAAACAAATTAATTTCAT-ATTTTTCTAACAAATATTAGTATAAAATATGATT-AAAG
71593065 TATAATATTATAAAAAAATTACTTAAAAAAC-ATTT--TTTTTCCTGAAT
64 TATAATATTATAAAAAAATTACTTAAAAAACAATTTAATTTTT-CTGAAT
71593112 TCAAACATTT
Statistics
Matches: 99, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
113 21 0.21
114 5 0.05
115 37 0.37
116 4 0.04
117 32 0.32
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.42
Consensus pattern (115 bp):
GAAAATTTAAACAAATTAATTTCATATTTTTCTAACAAATATTAGTATAAAATATGATTAAAGTA
TAATATTATAAAAAAATTACTTAAAAAACAATTTAATTTTTCTGAATAAT
Found at i:71596221 original size:232 final size:232
Alignment explanation
Indices: 71595809--71596460 Score: 1092
Period size: 232 Copynumber: 2.8 Consensus size: 232
71595799 GAGGAGACCA
* * * * **
71595809 CAACAAGCCGAAAGTCACC-AGAGATATAACAAAAATCCCATTAAAAC-ATAAGTTAAGAAGGCC
1 CAACAAGGCAAAAGTCACCGA-AGATATAAAAAAAATCCCATTAAAACAAAAAGTTAAGAATACC
** * * * *
71595872 GAGAACACGACTAGATATAAAACATAAATCAAGTTTCCTTTGTGTAAGACCTATGTTACTCTGGC
65 GAGAACGTGACTACATATAAGACATAAATCAAGTTTCCTTTGTGTAAGACCTATGTTGCACTGGC
* * * ** *
71595937 TCTTCATTTTTCTTTTAAGCACCCAATTCCAACACTCGTGTCCAACGTATATTTGGACATTGGCA
130 TCTTCATTTTTCTTTTAAGTACTCAATTCCAACACTCATGTCTGATGTATATTTGGACATTGGCA
71596002 TGTACAGCGTATATCTAGACATTGGTTTGCAAGGGGAC
195 TGTACAGCGTATATCTAGACATTGGTTTGCAAGGGGAC
*
71596040 CAACAAGGCAAAAGTCACCGAAGATATAAAAAAAATCCCATTAAAACAAAAAGTTAAGACTACCG
1 CAACAAGGCAAAAGTCACCGAAGATATAAAAAAAATCCCATTAAAACAAAAAGTTAAGAATACCG
71596105 AGAACGTGACTACATATAAGACATAAATCAAGTTTCCTTTGTGTAAGACCTATGTTGCACTGGCT
66 AGAACGTGACTACATATAAGACATAAATCAAGTTTCCTTTGTGTAAGACCTATGTTGCACTGGCT
*
71596170 CTTCATTTTTCTTTTAAGTATTCAATTCCAACACTCATGTCTGATGTATATTTGGACATTGGCAT
131 CTTCATTTTTCTTTTAAGTACTCAATTCCAACACTCATGTCTGATGTATATTTGGACATTGGCAT
*
71596235 GTACAGCGTATATCTAGCCATTGGTTTGCAAGGGGAC
196 GTACAGCGTATATCTAGACATTGGTTTGCAAGGGGAC
71596272 CAACAAGGCAAAAGTCACCGAAGATATAAAAAAAATCCCATTAAAACAAAAAGTTAAGAATACCG
1 CAACAAGGCAAAAGTCACCGAAGATATAAAAAAAATCCCATTAAAACAAAAAGTTAAGAATACCG
71596337 AGAACGTGACTACATATAAGACATAAATCAAGTTTCCTTTGTGTAAGACCTATGTTGCACTGGCT
66 AGAACGTGACTACATATAAGACATAAATCAAGTTTCCTTTGTGTAAGACCTATGTTGCACTGGCT
71596402 CTTCATTTTTCTTTTAAGTACTCAATTCCAACACTCATGTCTGATGTATATTTGGACAT
131 CTTCATTTTTCTTTTAAGTACTCAATTCCAACACTCATGTCTGATGTATATTTGGACAT
71596461 AAGTTGTCCA
Statistics
Matches: 396, Mismatches: 23, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
231 42 0.11
232 354 0.89
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.29
Consensus pattern (232 bp):
CAACAAGGCAAAAGTCACCGAAGATATAAAAAAAATCCCATTAAAACAAAAAGTTAAGAATACCG
AGAACGTGACTACATATAAGACATAAATCAAGTTTCCTTTGTGTAAGACCTATGTTGCACTGGCT
CTTCATTTTTCTTTTAAGTACTCAATTCCAACACTCATGTCTGATGTATATTTGGACATTGGCAT
GTACAGCGTATATCTAGACATTGGTTTGCAAGGGGAC
Found at i:71596908 original size:187 final size:187
Alignment explanation
Indices: 71596593--71596972 Score: 690
Period size: 187 Copynumber: 2.0 Consensus size: 187
71596583 CGCAATTCAA
*
71596593 TAAATCACATCCTCAGAGGAGAACATATTGTAAAACAATTCCATTACCATGATAAATGCCAGATA
1 TAAATCACATCCTCAGAGGAGAACATATTGTAAAACAATTCCATTACCATGATAAATGCCAAATA
*
71596658 TAACGGATCAAATTCGTAGTACAAATAGATATAACAAAGAAAAATGGATCGGTTTAGCATGAGAC
66 TAACGGATCAAATTCATAGTACAAATAGATATAACAAAGAAAAATGGATCGGTTTAGCATGAGAC
* *
71596723 ATGGTTAATAGAACTACATGCATCACGTAATATAGACTAAGAAGGATTTGCAAAACT
131 ATGGTTAATAGAACTAAATGCATCACATAATATAGACTAAGAAGGATTTGCAAAACT
*
71596780 TAAATCACATCCTCCA-AGGAGAATATATTGTAAAACAATTCCATTACCATGATAAATGCCAAAT
1 TAAATCACATCCT-CAGAGGAGAACATATTGTAAAACAATTCCATTACCATGATAAATGCCAAAT
71596844 ATAACGGATCAAATTCATAGTACAAATAGATATAACAAAGAAAAATGGATCGGTTTAGCATGAGA
65 ATAACGGATCAAATTCATAGTACAAATAGATATAACAAAGAAAAATGGATCGGTTTAGCATGAGA
*
71596909 CATGGTTAATAGAACTAAATGCATCACATAATATAGAGTAAGAAGGATTTGCAAAACT
130 CATGGTTAATAGAACTAAATGCATCACATAATATAGACTAAGAAGGATTTGCAAAACT
71596967 TAAATC
1 TAAATC
71596973 GATGTAATAA
Statistics
Matches: 186, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
187 184 0.99
188 2 0.01
ACGTcount: A:0.44, C:0.15, G:0.16, T:0.25
Consensus pattern (187 bp):
TAAATCACATCCTCAGAGGAGAACATATTGTAAAACAATTCCATTACCATGATAAATGCCAAATA
TAACGGATCAAATTCATAGTACAAATAGATATAACAAAGAAAAATGGATCGGTTTAGCATGAGAC
ATGGTTAATAGAACTAAATGCATCACATAATATAGACTAAGAAGGATTTGCAAAACT
Found at i:71611005 original size:15 final size:15
Alignment explanation
Indices: 71610985--71611019 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
71610975 AAATTCTCTT
71610985 ATAAATAAATAAATA
1 ATAAATAAATAAATA
* *
71611000 ATAAATTAATATATA
1 ATAAATAAATAAATA
71611015 ATAAA
1 ATAAA
71611020 ATTATACTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
ATAAATAAATAAATA
Found at i:71611790 original size:20 final size:20
Alignment explanation
Indices: 71611754--71611805 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 20
71611744 TGGTCACTCG
71611754 TTTTATCTTTTTAATAATTAA
1 TTTTA-CTTTTTAATAATTAA
71611775 TTTTACTTTTCT-ATAATTAA
1 TTTTACTTTT-TAATAATTAA
*
71611795 TTTTAGTTTTT
1 TTTTACTTTTT
71611806 CCTTCGTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 1 0.03
20 22 0.76
21 6 0.21
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (20 bp):
TTTTACTTTTTAATAATTAA
Found at i:71617741 original size:729 final size:740
Alignment explanation
Indices: 71616649--71618519 Score: 2003
Period size: 729 Copynumber: 2.5 Consensus size: 740
71616639 AAATATTACA
*
71616649 CATC-TTAAAAATATACATTTCAAAAAGGTTTTATTAGTGAATTGGTCCTTGAGCTATACCTAAA
1 CATCATTAAAAATATACATTTC-AAAAGGTTTT-TTAGTGAATTGGTCCTTGAACTATACCTAAA
* * ** *
71616713 TTCCTAGA-TCAATTCCTTTATTTTGTCTAAAGTGGCACTGAACTATCAATTTTGTCTTAGTTTA
64 TTCCTAGATTGATTTTTTTTATTTT-TCTAAAGTGGTACTGAACTATCAATTTTGTCTTAGTTTA
* * * * *
71616777 CCCTCAAAAACATTATCATCTAATAAGAACATGCCACATGTCACATTCGTATTGGATGATATTGT
128 CCCCCAAAAACATTATCATCTAACAAGAACATGCCAAATGTCACGTTTGTATTGGATGATATTG-
* *
71616842 TTTTTGGGGGTACATGAGAAAAAATGATAGTTTAGGTACCA-TTTTTAGCAAAAA-AAATAA--T
192 TTTTTGGGGGTACATGAGAAAAAATTATAGTTTAGGTA-CATTTTTTAGCAAAAAGAAAAAACTT
* * ** * *
71616903 TAAAACCCAATTTTGGAATTGAGATATAGTTGAAGGGTTAAATTGCTAATAAAGCCTTTCATAGA
256 TAAAA-CCAA---T-G-TTTGAGATATAGTTGAAGGGTTAATTTATTGATAAAGCCTTTCAAAGA
* * *
71616968 GTTGAAGACTAGAAATAACTAAAATAAAGT-TCAACGGTTAACATTATTAAAATTATTTTATTAA
315 GTT-AAGACTAGAAATGACTAAAATCAAGTCT-AACTGTTAACATTATTAAAATTATTTTATT-A
71617032 AATTTAA-T-TTATA-A-CGTCATTTTTTTAATTATATTGGTA-CTAAGTGAG-TTTTT-TTTAT
377 AATTTAATTATTATATAGCGTCATTTTTTTAATTATATTGGTAGC-AAGTGAGATTTTTGTTTAT
* * * * * ** *
71617090 TTTAAAATATCACATCAATCAATTTAAC-AAAAAA-TAAATAAAATCAATG-TAATTATTGGATT
441 TTTAAAACATCACACCAACCAATTTAACAAAAAAAGAAAAGAAAATCAATGTTAACAATTGGATC
* *
71617152 TGGATTTTTAAATCTGAAAAATAGAAATTAAGTTCTTAAA-AAAATAGTATAGTGACTAAA-TTC
506 TGGATTTTTAAATCTGAAAAATAGAAACTAAATTCTTAAATAAAATAGTATAGTGACTAAATTTC
* * * *
71617215 TAAATATATAAAAAG-T-GGAATTTATAGTC-GA-GGA-ACCAAATT-T-GTA-A-AA-AAA-AG
571 -AAATATATAAAAAGATAGGAATTTAT-GACAAATGAACACCAAATTATAGTAGAGAACAAATAA
** * * *
71617269 GGTGAATCTATCTTAGAGGTCCCTCTATTATACATTTTGATATATATTTT-TTTAAGATTAGACA
634 AATGAATCTACCTTAGAAGTCCCTCTAATATACATTTTGATAT-TATTTTGTTT-AGATTAGACA
71617333 AATATTACACAGTTCTTTTAGATGATATACCAAAGAGTTAGCCT
697 AATATTACACAGTTCTTTTAGATGATATACCAAAGAGTTAGCCT
*
71617377 CATCATTAAAAATATACATTTCAAAATGGCTTTTTTAGTGAATTGGTGCTTGAACTATACCTAAA
1 CATCATTAAAAATATACATTTCAAAA-GG-TTTTTTAGTGAATTGGTCCTTGAACTATACCTAAA
*
71617442 TTCCTAGATTGATTTTTTTTATTATTATCTAAAGTGGTACTGAACTATCAATTTTGTCTTATTTT
64 TTCCTAGATTGATTTTTTTTATT-TT-TCTAAAGTGGTACTGAACTATCAATTTTGTCTTAGTTT
71617507 ACCCCCCAAAAACATTATCATCTAACAAGAACATGCCAAATGTCACGTTTGTATTGGATGATATT
127 A-CCCCCAAAAACATTATCATCTAACAAGAACATGCCAAATGTCACGTTTGTATTGGATGATATT
* *
71617572 GTTTTTCGGGGGTACATGAGAAAAAAATTATAGTTTAGTTGCAATTTTTTA-CTAAAAAGAAAAA
191 GTTTTT-GGGGGTACATGAG-AAAAAATTATAGTTTAGGTAC-ATTTTTTAGC-AAAAAGAAAAA
*
71617636 ACTTTAAAACC-A-GTTTGAGATATAGTTGAAGGGTTAATTTATTGATAAAGCCCTTCAAAGAGT
252 ACTTTAAAACCAATGTTTGAGATATAGTTGAAGGGTTAATTTATTGATAAAGCCTTTCAAAGAGT
* * * *
71617699 GTAAGACTAAAAATGGCTAAAATCAAGTCTAACTGCTAACATTGTTAAAATTATTTTATTAAATT
317 -TAAGACTAGAAATGACTAAAATCAAGTCTAACTGTTAACATTATTAAAATTATTTTATTAAATT
*
71617764 TAATTTTATTATATTTTTAGCGTCATTTTTTTAATTATATTGTTAGCAAGTGAGTATTTTTGTTT
381 TAA--TTATTATA----TAGCGTCATTTTTTTAATTATATTGGTAGCAAGTGAG-ATTTTTGTTT
* *
71617829 ATTTTAAAACGTCACACCAACCAATTTAACAAAAAGAAAAAAGAAAAGAAAATCAGTGTTAACAA
439 ATTTTAAAACATCACACCAACCAATTTAAC----A-AAAAAAGAAAAGAAAATCAATGTTAACAA
* *
71617894 TTGGATCTGGATTTTTAAATCTGAAAAGTAGAGACTAAATTCTTAAATAAAATAGTATAGTGACT
499 TTGGATCTGGATTTTTAAATCTGAAAAATAGAAACTAAATTCTTAAATAAAATAGTATAGTGACT
* * *
71617959 AAATTTCAAATCTATAAAAAGTATAGGGATTTATGACATAATTTAACCACCAAATTATAGTAGAG
564 AAATTTCAAATATATAAAAAG-ATAGGAATTTATGACA-AA-TGAA-CACCAAATTATAGTAGA-
* * *
71618024 GAACTAAATTTGTCAAAATGAGTGTACCTTAGAAGTCCCTCTAATATACATTTTGTTATTATTTT
624 GAAC-AAA----T-AAAATGAATCTACCTTAGAAGTCCCTCTAATATACATTTTGATATTATTTT
* * * *
71618089 GTTTTGGTTAGACAAATATTACACATTTCTTTTAGATGATATGCCAAAGAGTTAGCCT
683 GTTTAGATTAGACAAATATTACACAGTTCTTTTAGATGATATACCAAAGAGTTAGCCT
*
71618147 CATCATTAAAAATGT---TTT----A------TTAGTGAATTGGTCCTTGAACTATACCTAAATT
1 CATCATTAAAAATATACATTTCAAAAGGTTTTTTAGTGAATTGGTCCTTGAACTATACCTAAA-T
** * * * * * * * *
71618199 TTGTAGATCGGTCTGTTTTTGTTGTT-TAAAGTGGTATTGAACTATCAA--TTGTCTTAGTGTAG
65 TCCTAGATTGAT-TTTTTTTATTTTTCTAAAGTGGTACTGAACTATCAATTTTGTCTTAGTTTAC
* * * * * *
71618261 CCCCAAAAACAATATCATCTAACAACAACGTGCCAAATGTCACGTGTGTATTGGATGAAACTGTT
129 CCCCAAAAACATTATCATCTAACAAGAACATGCCAAATGTCACGTTTGTATTGGATGATATTGTT
*
71618326 TTT--GGGTACATGAGAAAAAATTGATAGTTTAGGTACTTTTTTTAGCAAAAAG-AAAAACTTTA
194 TTTGGGGGTACATGAGAAAAAATT-ATAGTTTAGGTACATTTTTTAGCAAAAAGAAAAAACTTTA
* * * *
71618388 AACCCAATTTTAAAATTTAGATATAGTTGAAGGGTTAATTTATTGATAAAGCCTTTCAATGAGTA
258 AAACCAA-TGT----TTGAGATATAGTTGAAGGGTTAATTTATTGATAAAGCCTTTCAAAGAGT-
* * * *
71618453 TAAGACTAGAAACGACTAAAATCAAGTCCAACTGTTAAGATTCTTAAAATTATTTTATTAAATTT
317 TAAGACTAGAAATGACTAAAATCAAGTCTAACTGTTAACATTATTAAAATTATTTTATTAAATTT
71618518 AA
382 AA
71618520 GTACATTATA
Statistics
Matches: 968, Mismatches: 101, Indels: 123
0.81 0.08 0.10
Matches are distributed among these distances:
728 16 0.02
729 148 0.15
730 17 0.02
731 45 0.05
732 78 0.08
733 19 0.02
734 11 0.01
735 6 0.01
736 2 0.00
737 7 0.01
738 31 0.03
739 1 0.00
740 5 0.01
741 29 0.03
746 14 0.01
747 28 0.03
748 35 0.04
749 47 0.05
750 33 0.03
751 65 0.07
752 14 0.01
753 114 0.12
754 22 0.02
755 31 0.03
756 11 0.01
757 8 0.01
758 8 0.01
759 1 0.00
760 3 0.00
761 1 0.00
763 3 0.00
765 3 0.00
767 3 0.00
770 70 0.07
771 39 0.04
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.37
Consensus pattern (740 bp):
CATCATTAAAAATATACATTTCAAAAGGTTTTTTAGTGAATTGGTCCTTGAACTATACCTAAATT
CCTAGATTGATTTTTTTTATTTTTCTAAAGTGGTACTGAACTATCAATTTTGTCTTAGTTTACCC
CCAAAAACATTATCATCTAACAAGAACATGCCAAATGTCACGTTTGTATTGGATGATATTGTTTT
TGGGGGTACATGAGAAAAAATTATAGTTTAGGTACATTTTTTAGCAAAAAGAAAAAACTTTAAAA
CCAATGTTTGAGATATAGTTGAAGGGTTAATTTATTGATAAAGCCTTTCAAAGAGTTAAGACTAG
AAATGACTAAAATCAAGTCTAACTGTTAACATTATTAAAATTATTTTATTAAATTTAATTATTAT
ATAGCGTCATTTTTTTAATTATATTGGTAGCAAGTGAGATTTTTGTTTATTTTAAAACATCACAC
CAACCAATTTAACAAAAAAAGAAAAGAAAATCAATGTTAACAATTGGATCTGGATTTTTAAATCT
GAAAAATAGAAACTAAATTCTTAAATAAAATAGTATAGTGACTAAATTTCAAATATATAAAAAGA
TAGGAATTTATGACAAATGAACACCAAATTATAGTAGAGAACAAATAAAATGAATCTACCTTAGA
AGTCCCTCTAATATACATTTTGATATTATTTTGTTTAGATTAGACAAATATTACACAGTTCTTTT
AGATGATATACCAAAGAGTTAGCCT
Found at i:71621918 original size:2 final size:2
Alignment explanation
Indices: 71621913--71621939 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
71621903 TATATTCCAA
71621913 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
71621940 TATATATATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:71622030 original size:18 final size:18
Alignment explanation
Indices: 71622007--71622048 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
71621997 TAATTAAGTC
71622007 AATTAATTGTTTGAGTTT
1 AATTAATTGTTTGAGTTT
71622025 AATTAATTGTTTGAGTTT
1 AATTAATTGTTTGAGTTT
71622043 AATTAA
1 AATTAA
71622049 AAATGAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.52
Consensus pattern (18 bp):
AATTAATTGTTTGAGTTT
Found at i:71626701 original size:6 final size:6
Alignment explanation
Indices: 71626690--71626716 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
71626680 ATGGTTTCTG
71626690 TATGTA TATGTA TATGTA TATGTA TAT
1 TATGTA TATGTA TATGTA TATGTA TAT
71626717 ATAATGTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (6 bp):
TATGTA
Found at i:71628930 original size:25 final size:25
Alignment explanation
Indices: 71628897--71628945 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
71628887 ATAATTATTT
* *
71628897 ATTTTAATATATAT-TTTATAATTAA
1 ATTTAAATAAATATGTTTA-AATTAA
71628922 ATTTAAATAAATATGTTTAAATTA
1 ATTTAAATAAATATGTTTAAATTA
71628946 TTAAATAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (25 bp):
ATTTAAATAAATATGTTTAAATTAA
Found at i:71632280 original size:18 final size:19
Alignment explanation
Indices: 71632246--71632281 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
71632236 CATTACATCG
*
71632246 ATATCATTTTTATGATTAC
1 ATATCATTTTTACGATTAC
71632265 ATATCA-TTTTACGATTA
1 ATATCATTTTTACGATTA
71632282 AATTCGATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.33, C:0.11, G:0.06, T:0.50
Consensus pattern (19 bp):
ATATCATTTTTACGATTAC
Found at i:71633928 original size:4 final size:4
Alignment explanation
Indices: 71633921--71633947 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
71633911 CTATGAAGCA
71633921 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
71633948 CCCCATAGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:71643029 original size:17 final size:17
Alignment explanation
Indices: 71643007--71643044 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
71642997 GGCTGGCCGG
71643007 TTGGGGGCAGA-TGGGCT
1 TTGGGGGCA-ACTGGGCT
*
71643024 TTGGGGGGAACTGGGCT
1 TTGGGGGCAACTGGGCT
71643041 TTGG
1 TTGG
71643045 AATAATATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 1 0.05
17 18 0.95
ACGTcount: A:0.11, C:0.11, G:0.53, T:0.26
Consensus pattern (17 bp):
TTGGGGGCAACTGGGCT
Found at i:71646009 original size:38 final size:37
Alignment explanation
Indices: 71645967--71646039 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
71645957 ATGTGTGGAA
* *
71645967 TTGAATTGAATATTGACTTGAAAA-TGGAAAAGTGAATT
1 TTGAATTGAATAGTGA-TT-AAAAGTGAAAAAGTGAATT
71646005 TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAA
71646040 ATTATGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 4 0.12
37 13 0.41
38 15 0.47
ACGTcount: A:0.45, C:0.01, G:0.22, T:0.32
Consensus pattern (37 bp):
TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAATT
Found at i:71648751 original size:31 final size:31
Alignment explanation
Indices: 71648711--71648770 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 31
71648701 TAAAATTACA
*
71648711 CTCATAAATTTTCT-TAAAATTCTAATTAGATG
1 CTCATAAATTTT-TGAAAAATT-TAATTAGATG
71648743 CTCA-AAATTTTTGAAAAATTTAATTAGA
1 CTCATAAATTTTTGAAAAATTTAATTAGA
71648771 CCCCTTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 9 0.35
31 13 0.50
32 4 0.15
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.42
Consensus pattern (31 bp):
CTCATAAATTTTTGAAAAATTTAATTAGATG
Found at i:71649665 original size:21 final size:21
Alignment explanation
Indices: 71649632--71649701 Score: 63
Period size: 21 Copynumber: 3.3 Consensus size: 21
71649622 ACGTTCTGCC
71649632 CACACGGTC-GTGTACCTCAGT
1 CACACGG-CAGTGTACCTCAGT
* *
71649653 CACATGGCAGTGT-CTCTCAGC
1 CACACGGCAGTGTAC-CTCAGT
* * *
71649674 CACACGGCTGTGTACCCCTGT
1 CACACGGCAGTGTACCTCAGT
71649695 CACACGG
1 CACACGG
71649702 TCTGAACCTT
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
20 2 0.05
21 36 0.92
22 1 0.03
ACGTcount: A:0.19, C:0.36, G:0.24, T:0.21
Consensus pattern (21 bp):
CACACGGCAGTGTACCTCAGT
Found at i:71650924 original size:12 final size:12
Alignment explanation
Indices: 71650907--71650932 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
71650897 TAGGAATCCC
71650907 AAAACTTTTGCA
1 AAAACTTTTGCA
71650919 AAAACTTTTGCA
1 AAAACTTTTGCA
71650931 AA
1 AA
71650933 TTCTAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (12 bp):
AAAACTTTTGCA
Found at i:71651015 original size:30 final size:29
Alignment explanation
Indices: 71650981--71651045 Score: 69
Period size: 30 Copynumber: 2.2 Consensus size: 29
71650971 AACCCTCTAA
* *
71650981 AATTACA-CTCATAAATTTTCTTAAAATTTT
1 AATTACAGCTCA-AAATTTT-TGAAAAATTT
*
71651011 AATTAGATGCTCAAAATTTTTGAAAAATTT
1 AATTACA-GCTCAAAATTTTTGAAAAATTT
71651041 AATTA
1 AATTA
71651046 GACCCCTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
30 19 0.63
31 7 0.23
32 4 0.13
ACGTcount: A:0.43, C:0.09, G:0.05, T:0.43
Consensus pattern (29 bp):
AATTACAGCTCAAAATTTTTGAAAAATTT
Found at i:71651046 original size:30 final size:32
Alignment explanation
Indices: 71650988--71651047 Score: 88
Period size: 30 Copynumber: 1.9 Consensus size: 32
71650978 TAAAATTACA
* *
71650988 CTCATAAATTTTCTTAAAATTTTAATTAGATG
1 CTCATAAATTTTCTGAAAAATTTAATTAGATG
71651020 CTCA-AAATTTT-TGAAAAATTTAATTAGA
1 CTCATAAATTTTCTGAAAAATTTAATTAGA
71651048 CCCCTTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 15 0.58
31 7 0.27
32 4 0.15
ACGTcount: A:0.42, C:0.08, G:0.07, T:0.43
Consensus pattern (32 bp):
CTCATAAATTTTCTGAAAAATTTAATTAGATG
Found at i:71652941 original size:100 final size:99
Alignment explanation
Indices: 71652761--71652944 Score: 235
Period size: 100 Copynumber: 1.8 Consensus size: 99
71652751 TTGTGTGTGT
* * * * * *
71652761 ATATATATATTATTTAAGCCCTTAATTGAGCTTGTGTCACCAGTCAAATGGGCACTAACTTGGTT
1 ATATATATATTATTTAAGCCCCTAATTGAGCTTGCGTCACCAGTCAAATGGACACCAACTCGATT
71652826 AGGAAAATTACAAAAATATTATTTTGTATTTAAA
66 AGGAAAATTACAAAAATATTATTTTGTATTTAAA
* * * * * *
71652860 ATATATACTATTATTTAAGCCCCTGATTGAGTTTGCGTCACGAGTCAACTGGACCCCAGCTCGAT
1 ATATATA-TATTATTTAAGCCCCTAATTGAGCTTGCGTCACCAGTCAAATGGACACCAACTCGAT
71652925 TA-GAGAAATTACAAAAATAT
65 TAGGA-AAATTACAAAAATAT
71652945 CCGTTAATAT
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
99 9 0.13
100 62 0.87
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (99 bp):
ATATATATATTATTTAAGCCCCTAATTGAGCTTGCGTCACCAGTCAAATGGACACCAACTCGATT
AGGAAAATTACAAAAATATTATTTTGTATTTAAA
Found at i:71652956 original size:100 final size:99
Alignment explanation
Indices: 71652761--71652972 Score: 219
Period size: 100 Copynumber: 2.1 Consensus size: 99
71652751 TTGTGTGTGT
* * * * * *
71652761 ATATATATATTATTTAAGCCCTTAATTGAGCTTGTGTCACCAGTCAAATGGGCACTAACTTGGTT
1 ATATATATATTATTTAAGCCCCTAATTGAGCTTGCGTCACCAGTCAAATGGACACCAACTCGATT
* * **
71652826 AGGAAAATTACAAAAATATTATTTTGTATTTAAA
66 AGGAAAATTACAAAAATATCAGTTAATATTTAAA
* * * * * *
71652860 ATATATACTATTATTTAAGCCCCTGATTGAGTTTGCGTCACGAGTCAACTGGACCCCAGCTCGAT
1 ATATATA-TATTATTTAAGCCCCTAATTGAGCTTGCGTCACCAGTCAAATGGACACCAACTCGAT
* *
71652925 TA-GAGAAATTACAAAAATATCCGTTAATATTTGAA
65 TAGGA-AAATTACAAAAATATCAGTTAATATTTAAA
*
71652960 ATAAATTATATTA
1 ATATA-TATATTA
71652973 CTTGGGAGTA
Statistics
Matches: 91, Mismatches: 19, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
99 9 0.10
100 80 0.88
101 2 0.02
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (99 bp):
ATATATATATTATTTAAGCCCCTAATTGAGCTTGCGTCACCAGTCAAATGGACACCAACTCGATT
AGGAAAATTACAAAAATATCAGTTAATATTTAAA
Found at i:71653954 original size:16 final size:17
Alignment explanation
Indices: 71653910--71653956 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 17
71653900 GTCATATTCC
71653910 AAGTTTGAGTCATTTTA
1 AAGTTTGAGTCATTTTA
*
71653927 AATTTTGA-TCATTTT-
1 AAGTTTGAGTCATTTTA
*
71653942 GAGTTTGAGTCATTT
1 AAGTTTGAGTCATTT
71653957 GTAATTTCAG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
15 6 0.23
16 13 0.50
17 7 0.27
ACGTcount: A:0.26, C:0.06, G:0.17, T:0.51
Consensus pattern (17 bp):
AAGTTTGAGTCATTTTA
Found at i:71654246 original size:21 final size:22
Alignment explanation
Indices: 71654204--71654246 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
71654194 TGTTAACCTT
* **
71654204 TCTTCGGTGCGTATTTTTTTCA
1 TCTTCGGTCCGTATTTACTTCA
71654226 TCTTCGGTCCG-ATTTACTTCA
1 TCTTCGGTCCGTATTTACTTCA
71654247 AATTTTGTTC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.12, C:0.23, G:0.16, T:0.49
Consensus pattern (22 bp):
TCTTCGGTCCGTATTTACTTCA
Found at i:71660464 original size:19 final size:17
Alignment explanation
Indices: 71660440--71660483 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 17
71660430 ATTAACCCTT
71660440 ATTATATTTATACTAGAGA
1 ATTATATTTATACTA-A-A
71660459 ATTATA-TT-TACTAAA
1 ATTATATTTATACTAAA
71660474 ATTATATTTA
1 ATTATATTTA
71660484 CAAATAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 7 0.30
16 3 0.13
17 5 0.22
18 2 0.09
19 6 0.26
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.48
Consensus pattern (17 bp):
ATTATATTTATACTAAA
Found at i:71669245 original size:305 final size:305
Alignment explanation
Indices: 71668694--71669303 Score: 1211
Period size: 305 Copynumber: 2.0 Consensus size: 305
71668684 AGTTGAGGCT
71668694 GACCTGAAACCAAAAAAATCACCTATAAGAAGGGGGTACTGCGGTATTGAGGCCATGGAAGTTGT
1 GACCTGAAACCAAAAAAATCACCTATAAGAAGGGGGTACTGCGGTATTGAGGCCATGGAAGTTGT
71668759 GATACCCCTAACAATGCCGAACTAAAGAGAATCGATGCCATGTACAGTAATATCGCGATACTGAT
66 GATACCCCTAACAATGCCGAACTAAAGAGAATCGATGCCATGTACAGTAATATCGCGATACTGAT
71668824 ACCCCTAAGACTATCAGTCTCAAGACTGTTGTCGATATTGCGATATTGCTTTGTGACGGGTGAAA
131 ACCCCTAAGACTATCAGTCTCAAGACTGTTGTCGATATTGCGATATTGCTTTGTGACGGGTGAAA
71668889 AAAATACAGGGGAAATTTTATGTCAAACAAGCTTAAGTTTATTTTTCACTTAAGGGCAAACTAAT
196 AAAATACAGGGGAAATTTTATGTCAAACAAGCTTAAGTTTATTTTTCACTTAAGGGCAAACTAAT
71668954 TAATGTTAGGTTAAATAATAGTAGGCTATAATTTAAATTTATAAG
261 TAATGTTAGGTTAAATAATAGTAGGCTATAATTTAAATTTATAAG
*
71668999 GACCTGAAACCAAAAAAATCACCTATAAGAAGGGGGTACTGCGGTATTTAGGCCATGGAAGTTGT
1 GACCTGAAACCAAAAAAATCACCTATAAGAAGGGGGTACTGCGGTATTGAGGCCATGGAAGTTGT
71669064 GATACCCCTAACAATGCCGAACTAAAGAGAATCGATGCCATGTACAGTAATATCGCGATACTGAT
66 GATACCCCTAACAATGCCGAACTAAAGAGAATCGATGCCATGTACAGTAATATCGCGATACTGAT
71669129 ACCCCTAAGACTATCAGTCTCAAGACTGTTGTCGATATTGCGATATTGCTTTGTGACGGGTGAAA
131 ACCCCTAAGACTATCAGTCTCAAGACTGTTGTCGATATTGCGATATTGCTTTGTGACGGGTGAAA
71669194 AAAATACAGGGGAAATTTTATGTCAAACAAGCTTAAGTTTATTTTTCACTTAAGGGCAAACTAAT
196 AAAATACAGGGGAAATTTTATGTCAAACAAGCTTAAGTTTATTTTTCACTTAAGGGCAAACTAAT
71669259 TAATGTTAGGTTAAATAATAGTAGGCTATAATTTAAATTTATAAG
261 TAATGTTAGGTTAAATAATAGTAGGCTATAATTTAAATTTATAAG
71669304 CCTCTCATTC
Statistics
Matches: 304, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
305 304 1.00
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (305 bp):
GACCTGAAACCAAAAAAATCACCTATAAGAAGGGGGTACTGCGGTATTGAGGCCATGGAAGTTGT
GATACCCCTAACAATGCCGAACTAAAGAGAATCGATGCCATGTACAGTAATATCGCGATACTGAT
ACCCCTAAGACTATCAGTCTCAAGACTGTTGTCGATATTGCGATATTGCTTTGTGACGGGTGAAA
AAAATACAGGGGAAATTTTATGTCAAACAAGCTTAAGTTTATTTTTCACTTAAGGGCAAACTAAT
TAATGTTAGGTTAAATAATAGTAGGCTATAATTTAAATTTATAAG
Found at i:71669390 original size:28 final size:27
Alignment explanation
Indices: 71669353--71669412 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 27
71669343 TTTTCCATAG
71669353 TTTTAGGGTTAGATTTCTTTTCTTTTCAT
1 TTTTAGGGTTAGATTT-TTTTCTTTT-AT
71669382 TTTTA-GGTTAGATTTTTTTCTTTTAT
1 TTTTAGGGTTAGATTTTTTTCTTTTAT
71669408 TTTTA
1 TTTTA
71669413 TATTATATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
26 7 0.23
27 9 0.29
28 10 0.32
29 5 0.16
ACGTcount: A:0.15, C:0.07, G:0.12, T:0.67
Consensus pattern (27 bp):
TTTTAGGGTTAGATTTTTTTCTTTTAT
Found at i:71669479 original size:5 final size:5
Alignment explanation
Indices: 71669410--71669486 Score: 145
Period size: 5 Copynumber: 15.4 Consensus size: 5
71669400 TCTTTTATTT
71669410 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
*
71669460 TTATA TTATA TTATA TTATA TCATA TT
1 TTATA TTATA TTATA TTATA TTATA TT
71669487 TTGTTTTTTT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 70 1.00
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (5 bp):
TTATA
Found at i:71694567 original size:15 final size:14
Alignment explanation
Indices: 71694547--71694596 Score: 50
Period size: 15 Copynumber: 3.6 Consensus size: 14
71694537 ATTATAGTAA
71694547 TTAAAAACATGTTAT
1 TTAAAAACAT-TTAT
*
71694562 TTAAAAA-A-TAAT
1 TTAAAAACATTTAT
*
71694574 TAAAAAACATATTAT
1 TTAAAAACAT-TTAT
71694589 TTAAAAAC
1 TTAAAAAC
71694597 TAATTTAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
12 9 0.32
13 1 0.04
14 1 0.04
15 17 0.61
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.34
Consensus pattern (14 bp):
TTAAAAACATTTAT
Found at i:71694588 original size:27 final size:27
Alignment explanation
Indices: 71694544--71694608 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
71694534 GTAATTATAG
*
71694544 TAATT-AAAAACATGTTATTTAAAAAA
1 TAATTAAAAAACATATTATTTAAAAAA
*
71694570 TAATTAAAAAACATATTATTTAAAAAC
1 TAATTAAAAAACATATTATTTAAAAAA
71694597 TAATTTAAAAAA
1 TAA-TTAAAAAA
71694609 ATTAAACGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 5 0.14
27 22 0.63
28 8 0.23
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.34
Consensus pattern (27 bp):
TAATTAAAAAACATATTATTTAAAAAA
Found at i:71696109 original size:30 final size:30
Alignment explanation
Indices: 71696069--71696132 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
71696059 TAATTTTCTT
* * *
71696069 AAAATCTTTAAAATTTTAATTAGATCCTTA
1 AAAATCTTTAAAAATTTAATTAGACCCCTA
*
71696099 AAAATTTTTAAAAATTTAATTAGACCCCTA
1 AAAATCTTTAAAAATTTAATTAGACCCCTA
71696129 AAAA
1 AAAA
71696133 CTTAATGCCA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.48, C:0.11, G:0.03, T:0.38
Consensus pattern (30 bp):
AAAATCTTTAAAAATTTAATTAGACCCCTA
Found at i:71696740 original size:21 final size:21
Alignment explanation
Indices: 71696716--71696755 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
71696706 TGATGAAATA
*
71696716 TATTTAAA-ATTTAAATATTTT
1 TATTCAAATATTT-AATATTTT
71696737 TATTCAAATATTTAATATT
1 TATTCAAATATTTAATATT
71696756 AAAATTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (21 bp):
TATTCAAATATTTAATATTTT
Found at i:71697180 original size:22 final size:25
Alignment explanation
Indices: 71697155--71697207 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
71697145 ATATTACTTA
*
71697155 AAATTAATT-AT-AATATATA-ATT
1 AAATTAATTGATAAATATAAATATT
*
71697177 AAATTATTTGATAAATATAAATATT
1 AAATTAATTGATAAATATAAATATT
71697202 AAATTA
1 AAATTA
71697208 TAGAAATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 8 0.31
23 2 0.08
24 7 0.27
25 9 0.35
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (25 bp):
AAATTAATTGATAAATATAAATATT
Found at i:71704562 original size:20 final size:21
Alignment explanation
Indices: 71704528--71704581 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
71704518 ACAAATAATT
*
71704528 TAAAAATTATAAAATATTCAA
1 TAAAAATTATAAAATAGTCAA
*
71704549 TAAAAATTAT-AAATAGTCCA
1 TAAAAATTATAAAATAGTCAA
*
71704569 T-AAAATTTTAAAA
1 TAAAAATTATAAAA
71704582 AAAATTAACA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 7 0.24
20 12 0.41
21 10 0.34
ACGTcount: A:0.59, C:0.06, G:0.02, T:0.33
Consensus pattern (21 bp):
TAAAAATTATAAAATAGTCAA
Found at i:71711753 original size:15 final size:15
Alignment explanation
Indices: 71711717--71711753 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
71711707 AATTTTAAAG
*
71711717 AAAAATAAATATTGT
1 AAAAATAAATATTAT
71711732 AAAAATAAATATTAT
1 AAAAATAAATATTAT
*
71711747 AAGAATA
1 AAAAATA
71711754 TTATCTTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (15 bp):
AAAAATAAATATTAT
Found at i:71749785 original size:17 final size:19
Alignment explanation
Indices: 71749741--71749786 Score: 62
Period size: 17 Copynumber: 2.5 Consensus size: 19
71749731 ATATGTAAAA
71749741 TAAATAATTAAGAATATATT
1 TAAATAA-TAAGAATATATT
71749761 TAAA-AATAA-AATAT-TT
1 TAAATAATAAGAATATATT
71749777 TAAATAATAA
1 TAAATAATAA
71749787 TTAAAAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 6 0.24
17 10 0.40
18 3 0.12
19 2 0.08
20 4 0.16
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (19 bp):
TAAATAATAAGAATATATT
Found at i:71749819 original size:27 final size:29
Alignment explanation
Indices: 71749789--71749846 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
71749779 AATAATAATT
71749789 AAAAAT-ATCAAAACTAT-GTTTATATTA
1 AAAAATAATCAAAACTATAGTTTATATTA
* * *
71749816 AAAAATAATTAAAATTATATTTTATATTA
1 AAAAATAATCAAAACTATAGTTTATATTA
71749845 AA
1 AA
71749847 TTATAAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 6 0.23
28 9 0.35
29 11 0.42
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (29 bp):
AAAAATAATCAAAACTATAGTTTATATTA
Found at i:71750369 original size:31 final size:30
Alignment explanation
Indices: 71750334--71750414 Score: 85
Period size: 31 Copynumber: 2.7 Consensus size: 30
71750324 AATTTCAATA
*
71750334 AAAGGGTCTAATTAAAATTTATAAA-ACTATT
1 AAAGGGTCTAATTAAAATTTA-AAAGA-AATT
* *
71750365 AAAGGGTTTAAATAAAATTTAAAAGAAATT
1 AAAGGGTCTAATTAAAATTTAAAAGAAATT
*
71750395 -GAGGAGTCTAATTAAAATTT
1 AAAGG-GTCTAATTAAAATTT
71750415 TTTAAAAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
29 3 0.07
30 19 0.45
31 20 0.48
ACGTcount: A:0.49, C:0.04, G:0.14, T:0.33
Consensus pattern (30 bp):
AAAGGGTCTAATTAAAATTTAAAAGAAATT
Found at i:71764250 original size:25 final size:25
Alignment explanation
Indices: 71764220--71764461 Score: 190
Period size: 25 Copynumber: 9.7 Consensus size: 25
71764210 TAAATTTATA
*
71764220 TATTATGTAAATTATGTAAATTGTG
1 TATTATGTAAGTTATGTAAATTGTG
* **
71764245 TATTATATAAGTTATGTAAGCTGTG
1 TATTATGTAAGTTATGTAAATTGTG
*
71764270 TATTATGTAAGTTATGTAAGTTGTG
1 TATTATGTAAGTTATGTAAATTGTG
* *
71764295 TATTATGTAAGTTGTGTAAGTTGTG
1 TATTATGTAAGTTATGTAAATTGTG
* *
71764320 TATTACGTAAGTTATGT--ATTATG
1 TATTATGTAAGTTATGTAAATTGTG
* * *
71764343 TAAGTTATGTAAATTGTGT--ATTATG
1 T-A-TTATGTAAGTTATGTAAATTGTG
* *
71764368 TAAGTTATGTAAGTTGTGT--ATTATAG
1 T-A-TTATGTAAGTTATGTAAATTGT-G
** *
71764394 GGTTATGTAAGTTATGTAAGTTGTG
1 TATTATGTAAGTTATGTAAATTGTG
* * **
71764419 TATAATGTAAGTTATGTAAGTTAAG
1 TATTATGTAAGTTATGTAAATTGTG
* *
71764444 CATTATGTAAGTTGTGTA
1 TATTATGTAAGTTATGTA
71764462 TAATGTAATT
Statistics
Matches: 184, Mismatches: 28, Indels: 10
0.83 0.13 0.05
Matches are distributed among these distances:
23 5 0.03
24 15 0.08
25 160 0.87
26 4 0.02
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.46
Consensus pattern (25 bp):
TATTATGTAAGTTATGTAAATTGTG
Found at i:71764276 original size:41 final size:41
Alignment explanation
Indices: 71764230--71764475 Score: 160
Period size: 41 Copynumber: 5.8 Consensus size: 41
71764220 TATTATGTAA
*
71764230 ATTATGTAAATTGTGTATTATATAAGTTATGTAAGCTGTGTATTATGT
1 ATTATGTAAATTGTGTATTATGTAAGTTATGTAAG-T-TG-----TGT
* *
71764278 AAGTTATGTAAGTTGTGTATTATGTAAGTTGTGTAAGTTGTGT
1 -A-TTATGTAAATTGTGTATTATGTAAGTTATGTAAGTTGTGT
* * * *
71764321 ATTACGTAAGTTATGTATTATGTAAGTTATGTAAATTGTGT
1 ATTATGTAAATTGTGTATTATGTAAGTTATGTAAGTTGTGT
* * * * *
71764362 ATTATGTAAGTTATGTAAGTTGTGT-A-TTA--TAGGGTTATGT
1 ATTATGTAAATTGTGT-A-TTATGTAAGTTATGTA-AGTTGTGT
* * ** *
71764402 AAGTTATGTAAGTTGTGTATAATGTAAGTTATGTAAGTTAAGC
1 -A-TTATGTAAATTGTGTATTATGTAAGTTATGTAAGTTGTGT
* *
71764445 ATTATGTAAGTTGTGTATAATGTAA-TTATGT
1 ATTATGTAAATTGTGTATTATGTAAGTTATGT
71764476 TATGTTTTTC
Statistics
Matches: 169, Mismatches: 18, Indels: 29
0.78 0.08 0.13
Matches are distributed among these distances:
39 2 0.01
40 15 0.09
41 81 0.48
42 21 0.12
43 13 0.08
44 2 0.01
48 2 0.01
49 2 0.01
50 31 0.18
ACGTcount: A:0.30, C:0.01, G:0.22, T:0.46
Consensus pattern (41 bp):
ATTATGTAAATTGTGTATTATGTAAGTTATGTAAGTTGTGT
Found at i:71764287 original size:16 final size:16
Alignment explanation
Indices: 71764256--71764436 Score: 122
Period size: 16 Copynumber: 11.0 Consensus size: 16
71764246 ATTATATAAG
* *
71764256 TTATGTAAGCTGTGTA
1 TTATGTAAGTTATGTA
71764272 TTATGTAAGTTATGTAA
1 TTATGTAAGTTATGT-A
*
71764289 GTTGTGT-A-TTATGTAA
1 -TTATGTAAGTTATGT-A
* *
71764305 GTTGTGTAAGTTGTGTA
1 -TTATGTAAGTTATGTA
*
71764322 TTACGTAAGTTATGTA
1 TTATGTAAGTTATGTA
71764338 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATGT--A
*
71764356 TTGTGT-A-TTATGTAA
1 TTATGTAAGTTATGT-A
*
71764371 GTTATGTAAGTTGTGTA
1 -TTATGTAAGTTATGTA
*
71764388 TTA--TAGGGTTATGTAA
1 TTATGTA-AGTTATGT-A
*
71764404 GTTATGTAAGTTGTGTA
1 -TTATGTAAGTTATGTA
*
71764421 TAATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
71764437 AGTTAAGCAT
Statistics
Matches: 134, Mismatches: 17, Indels: 28
0.75 0.09 0.16
Matches are distributed among these distances:
14 2 0.01
15 8 0.06
16 84 0.63
17 11 0.08
18 27 0.20
19 2 0.01
ACGTcount: A:0.29, C:0.01, G:0.24, T:0.46
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:71764380 original size:9 final size:9
Alignment explanation
Indices: 71764222--71764441 Score: 161
Period size: 9 Copynumber: 26.3 Consensus size: 9
71764212 AATTTATATA
*
71764222 TTATGTAAA
1 TTATGTAAG
*
71764231 TTATGTAAA
1 TTATGTAAG
*
71764240 TTGTGT-A-
1 TTATGTAAG
*
71764247 TTATATAAG
1 TTATGTAAG
71764256 TTATGTAAG
1 TTATGTAAG
* *
71764265 CTGTGT-A-
1 TTATGTAAG
71764272 TTATGTAAG
1 TTATGTAAG
71764281 TTATGTAAG
1 TTATGTAAG
*
71764290 TTGTGT-A-
1 TTATGTAAG
71764297 TTATGTAAG
1 TTATGTAAG
*
71764306 TTGTGTAAG
1 TTATGTAAG
*
71764315 TTGTGT-A-
1 TTATGTAAG
*
71764322 TTACGTAAG
1 TTATGTAAG
71764331 TTATGT-A-
1 TTATGTAAG
71764338 TTATGTAAG
1 TTATGTAAG
*
71764347 TTATGTAAA
1 TTATGTAAG
*
71764356 TTGTGT-A-
1 TTATGTAAG
71764363 TTATGTAAG
1 TTATGTAAG
71764372 TTATGTAAG
1 TTATGTAAG
*
71764381 TTGTGT-A-
1 TTATGTAAG
*
71764388 TTA--TAGGG
1 TTATGTA-AG
71764396 TTATGTAAG
1 TTATGTAAG
71764405 TTATGTAAG
1 TTATGTAAG
*
71764414 TTGTGT-A-
1 TTATGTAAG
*
71764421 TAATGTAAG
1 TTATGTAAG
71764430 TTATGTAAG
1 TTATGTAAG
71764439 TTA
1 TTA
71764442 AGCATTATGT
Statistics
Matches: 167, Mismatches: 25, Indels: 38
0.73 0.11 0.17
Matches are distributed among these distances:
5 1 0.01
7 34 0.20
8 18 0.11
9 112 0.67
10 2 0.01
ACGTcount: A:0.30, C:0.01, G:0.22, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:71764449 original size:58 final size:58
Alignment explanation
Indices: 71764338--71764449 Score: 179
Period size: 58 Copynumber: 1.9 Consensus size: 58
71764328 AAGTTATGTA
* ** *
71764338 TTATGTAAGTTATGTAAATTGTGTATTATGTAAGTTATGTAAGTTGTGTATTATAGGG
1 TTATGTAAGTTATGTAAATTGTGTATAATGTAAGTTATGTAAGTTAAGCATTATAGGG
*
71764396 TTATGTAAGTTATGTAAGTTGTGTATAATGTAAGTTATGTAAGTTAAGCATTAT
1 TTATGTAAGTTATGTAAATTGTGTATAATGTAAGTTATGTAAGTTAAGCATTAT
71764450 GTAAGTTGTG
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 49 1.00
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.46
Consensus pattern (58 bp):
TTATGTAAGTTATGTAAATTGTGTATAATGTAAGTTATGTAAGTTAAGCATTATAGGG
Found at i:71769430 original size:26 final size:27
Alignment explanation
Indices: 71769380--71769440 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 27
71769370 AAAAATAACA
**
71769380 AAAATATTATAATTTTTTTTTATTTATT
1 AAAATATTATAA-TTTTTTTTATTTACC
71769408 AAAATATTATAA-TTTTTTTATTTACC
1 AAAATATTATAATTTTTTTTATTTACC
71769434 AAAATAT
1 AAAATAT
71769441 ACCAAAAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 19 0.61
28 12 0.39
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (27 bp):
AAAATATTATAATTTTTTTTATTTACC
Found at i:71769522 original size:27 final size:27
Alignment explanation
Indices: 71769492--71769543 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
71769482 GGCCAATCAC
*
71769492 ATTGGCGGCCCCAAAGGTGCCAAAGAG
1 ATTGGCGGCACCAAAGGTGCCAAAGAG
*
71769519 ATTGGCGGCACCAATGGTGCCAAAG
1 ATTGGCGGCACCAAAGGTGCCAAAG
71769544 GACTAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.33, T:0.13
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGTGCCAAAGAG
Found at i:71770130 original size:19 final size:18
Alignment explanation
Indices: 71770106--71770162 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 18
71770096 TCTAATTAAG
71770106 TAATAACTTTATTTTAATT
1 TAATAAC-TTATTTTAATT
* *
71770125 TAATAAAC-TATTCTCATT
1 TAAT-AACTTATTTTAATT
71770143 TAATAACTCTATTTTAATT
1 TAATAACT-TATTTTAATT
71770162 T
1 T
71770163 TAAAAAAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
17 3 0.10
18 12 0.39
19 13 0.42
20 3 0.10
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.53
Consensus pattern (18 bp):
TAATAACTTATTTTAATT
Done.