Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 238 of 240
Found at i:72170931 original size:18 final size:18
Alignment explanation
Indices: 72170904--72170996 Score: 123
Period size: 18 Copynumber: 5.2 Consensus size: 18
72170894 TACGACCGTT
72170904 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
72170922 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
72170940 TACAGTACTATTTACGTA
1 TACGGTACTATTCACGTA
* *
72170958 TACGGCACTATCCACGTA
1 TACGGTACTATTCACGTA
* *
72170976 TATGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
72170994 TAC
1 TAC
72170997 AGTAGTTGGG
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 62 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:72176819 original size:12 final size:12
Alignment explanation
Indices: 72176801--72176835 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
72176791 GCCCTTAAAC
72176801 AAAGGAATTAAT
1 AAAGGAATTAAT
*
72176813 GAAGGAATTAAT
1 AAAGGAATTAAT
72176825 AAAGG-ATTAAT
1 AAAGGAATTAAT
72176836 TGATATGTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 6 0.29
12 15 0.71
ACGTcount: A:0.54, C:0.00, G:0.20, T:0.26
Consensus pattern (12 bp):
AAAGGAATTAAT
Found at i:72184365 original size:37 final size:37
Alignment explanation
Indices: 72184315--72184389 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
72184305 TCTTACTATG
72184315 AATCAAGCACTTAATAAGCTCCATGTAAAGTGAAATA
1 AATCAAGCACTTAATAAGCTCCATGTAAAGTGAAATA
72184352 AATCAAGCACTTAATAAGCTCCATGTAAAGTGAAATA
1 AATCAAGCACTTAATAAGCTCCATGTAAAGTGAAATA
72184389 A
1 A
72184390 TAAATTTTCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.47, C:0.16, G:0.13, T:0.24
Consensus pattern (37 bp):
AATCAAGCACTTAATAAGCTCCATGTAAAGTGAAATA
Found at i:72187029 original size:12 final size:12
Alignment explanation
Indices: 72187011--72187045 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
72187001 GCCCTTAAAC
72187011 AAAGGAATTAAT
1 AAAGGAATTAAT
*
72187023 GAAGGAATTAAT
1 AAAGGAATTAAT
72187035 AAAGG-ATTAAT
1 AAAGGAATTAAT
72187046 TGATATGTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 6 0.29
12 15 0.71
ACGTcount: A:0.54, C:0.00, G:0.20, T:0.26
Consensus pattern (12 bp):
AAAGGAATTAAT
Found at i:72191943 original size:10 final size:10
Alignment explanation
Indices: 72191930--72191972 Score: 54
Period size: 9 Copynumber: 4.5 Consensus size: 10
72191920 AAAAAATTAA
72191930 AATAATTTTT
1 AATAATTTTT
72191940 AATAATTTTT
1 AATAATTTTT
* *
72191950 -GTACTTTTT
1 AATAATTTTT
72191959 AA-AATTTTT
1 AATAATTTTT
72191968 AATAA
1 AATAA
72191973 GTTGTATACT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
9 15 0.56
10 12 0.44
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (10 bp):
AATAATTTTT
Found at i:72191969 original size:28 final size:29
Alignment explanation
Indices: 72191933--72191997 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 29
72191923 AAATTAAAAT
* * *
72191933 AATTTTTAATAATTTTTGTAC-TTTTTAA
1 AATTTTTAATAAGTTGTATACTTTTTTAA
*
72191961 AATTTTTAATAAGTTGTATACTTTTTTTA
1 AATTTTTAATAAGTTGTATACTTTTTTAA
72191990 AATTTTTA
1 AATTTTTA
72191998 TATTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 18 0.56
29 14 0.44
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.60
Consensus pattern (29 bp):
AATTTTTAATAAGTTGTATACTTTTTTAA
Found at i:72192468 original size:18 final size:18
Alignment explanation
Indices: 72192428--72192464 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
72192418 TATTTGTTAC
72192428 AAATT-ACATAACATATA
1 AAATTAACATAACATATA
72192445 AAATTAACAT-A-ATATA
1 AAATTAACATAACATATA
72192461 AAAT
1 AAAT
72192465 ATTACAAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 9 0.47
17 6 0.32
18 4 0.21
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.30
Consensus pattern (18 bp):
AAATTAACATAACATATA
Found at i:72195506 original size:40 final size:40
Alignment explanation
Indices: 72195457--72195540 Score: 159
Period size: 40 Copynumber: 2.1 Consensus size: 40
72195447 CCATATCTAA
72195457 AAACCCTAAATTAAATTAAACTATTTCAATTGAATCGAAC
1 AAACCCTAAATTAAATTAAACTATTTCAATTGAATCGAAC
*
72195497 AAACCCTAAATTAAATTAAATTATTTCAATTGAATCGAAC
1 AAACCCTAAATTAAATTAAACTATTTCAATTGAATCGAAC
72195537 AAAC
1 AAAC
72195541 AAATTGGACC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.49, C:0.17, G:0.05, T:0.30
Consensus pattern (40 bp):
AAACCCTAAATTAAATTAAACTATTTCAATTGAATCGAAC
Found at i:72197491 original size:13 final size:14
Alignment explanation
Indices: 72197422--72197496 Score: 53
Period size: 14 Copynumber: 5.2 Consensus size: 14
72197412 ACAAGGAAAT
72197422 AAAGAAAGAAAAAG
1 AAAGAAAGAAAAAG
* *
72197436 AACAGAGAAGTAGAACG
1 AA-AGA-AAG-AAAAAG
* * *
72197453 AAACAGAG-AAAGG
1 AAAGAAAGAAAAAG
**
72197466 AAAGAGGGAAAAAG
1 AAAGAAAGAAAAAG
72197480 AAAGAAAGAAAAAG
1 AAAGAAAGAAAAAG
72197494 AAA
1 AAA
72197497 AAGGAAAATT
Statistics
Matches: 46, Mismatches: 11, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
13 9 0.20
14 21 0.46
15 5 0.11
16 5 0.11
17 6 0.13
ACGTcount: A:0.68, C:0.04, G:0.27, T:0.01
Consensus pattern (14 bp):
AAAGAAAGAAAAAG
Found at i:72199750 original size:20 final size:21
Alignment explanation
Indices: 72199708--72199748 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
72199698 ATTATATCAA
72199708 ATTGTAACAGAATTAACATTT
1 ATTGTAACAGAATTAACATTT
72199729 ATTGTAACA-AATTTAACATT
1 ATTGTAACAGAA-TTAACATT
72199749 ATCAGAGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.44, C:0.10, G:0.07, T:0.39
Consensus pattern (21 bp):
ATTGTAACAGAATTAACATTT
Found at i:72201899 original size:30 final size:30
Alignment explanation
Indices: 72201865--72201928 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
72201855 CAAATTTGGG
* *
72201865 AAATTCGAATTAAGC-CTTCAATTTTTTTGA
1 AAATTCGAATTAAACTCCTCAATTTTTTT-A
**
72201895 AAATTTTAATTAAACTCCTCAATTTTTTTA
1 AAATTCGAATTAAACTCCTCAATTTTTTTA
72201925 AAAT
1 AAAT
72201929 CTTCACTAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 17 0.59
31 12 0.41
ACGTcount: A:0.38, C:0.12, G:0.05, T:0.45
Consensus pattern (30 bp):
AAATTCGAATTAAACTCCTCAATTTTTTTA
Found at i:72202080 original size:15 final size:15
Alignment explanation
Indices: 72202041--72202084 Score: 53
Period size: 11 Copynumber: 3.3 Consensus size: 15
72202031 TTTCGCTACC
72202041 TTGTTGAAAATTACA
1 TTGTTGAAAATTACA
72202056 TT-TT---AATTACA
1 TTGTTGAAAATTACA
72202067 TTGTTGAAAATTAC-
1 TTGTTGAAAATTACA
72202081 TTGT
1 TTGT
72202085 ATTTTGATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 9
0.74 0.00 0.26
Matches are distributed among these distances:
11 9 0.36
12 2 0.08
14 6 0.24
15 8 0.32
ACGTcount: A:0.34, C:0.07, G:0.11, T:0.48
Consensus pattern (15 bp):
TTGTTGAAAATTACA
Found at i:72205171 original size:12 final size:12
Alignment explanation
Indices: 72205153--72205187 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
72205143 GCCCTTAAAC
72205153 AAAGGAATTAAT
1 AAAGGAATTAAT
*
72205165 GAAGGAATTAAT
1 AAAGGAATTAAT
72205177 AAAGG-ATTAAT
1 AAAGGAATTAAT
72205188 TGATATGTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 6 0.29
12 15 0.71
ACGTcount: A:0.54, C:0.00, G:0.20, T:0.26
Consensus pattern (12 bp):
AAAGGAATTAAT
Found at i:72206985 original size:16 final size:16
Alignment explanation
Indices: 72206937--72206994 Score: 71
Period size: 16 Copynumber: 3.6 Consensus size: 16
72206927 GTTTGGTTGC
* *
72206937 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
* * *
72206953 AGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
72206969 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
72206985 TGTAATGGAA
1 TGTAATGGAA
72206995 AAGCTGTGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.31
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:72207260 original size:18 final size:17
Alignment explanation
Indices: 72207239--72207273 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
72207229 TTATTATTAA
*
72207239 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
72207257 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
72207274 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:72207363 original size:156 final size:156
Alignment explanation
Indices: 72207126--72207438 Score: 567
Period size: 156 Copynumber: 2.0 Consensus size: 156
72207116 TAGAATACCC
72207126 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
*
72207191 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATA-ATTTTAA-TAAAA
72207256 -TATATAATTTAATAAAATTCTTAATAA
129 TTATATAATTTAATAAAATTCTTAATAA
*
72207283 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTA-TTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
*
72207347 ATATCAATAATAAATAATTTAATCATATTTTAACATAATTATTATTAAATAATTTTAATAAAATT
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATAATTTTAATAAAATT
72207412 ATATAATTTAATAAAATTCTTAATAA
131 ATATAATTTAATAAAATTCTTAATAA
72207438 T
1 T
72207439 CAATATTCTT
Statistics
Matches: 152, Mismatches: 3, Indels: 4
0.96 0.02 0.03
Matches are distributed among these distances:
154 5 0.03
155 35 0.23
156 71 0.47
157 41 0.27
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.47
Consensus pattern (156 bp):
TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATAATTTTAATAAAATT
ATATAATTTAATAAAATTCTTAATAA
Found at i:72207423 original size:18 final size:19
Alignment explanation
Indices: 72207390--72207429 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
72207380 CATAATTATT
72207390 ATTAAATAATTTTAATAAA
1 ATTAAATAATTTTAATAAA
*
72207409 ATTATATAA-TTTAATAAA
1 ATTAAATAATTTTAATAAA
72207427 ATT
1 ATT
72207430 CTTAATAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
ATTAAATAATTTTAATAAA
Found at i:72207535 original size:18 final size:17
Alignment explanation
Indices: 72207512--72207548 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
72207502 AATTATTATT
72207512 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
72207528 AAATATATGATTTAATA
1 AAATATATGATTTAATA
72207545 AAAT
1 AAAT
72207549 TCTTAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:72207656 original size:18 final size:17
Alignment explanation
Indices: 72207633--72207669 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
72207623 AATTATTATT
72207633 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
72207649 AAATATATGATTTAATA
1 AAATATATGATTTAATA
72207666 AAAT
1 AAAT
72207670 TCTTAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:72207800 original size:121 final size:121
Alignment explanation
Indices: 72207381--72207791 Score: 740
Period size: 121 Copynumber: 3.4 Consensus size: 121
72207371 ATATTTTAAC
*
72207381 ATAATTATTATTAAATA-ATTTTAA-TAAAATTATATAATTTAATAAAATTCTTAATAATCAATA
1 ATAATTATTATTAAATATATTTTAATTAAAA-TATATGATTTAATAAAATTCTTAATAATCAATA
* *
72207444 TTCTTATATGAATTTAC-TCAAATCATAATATATGATACTATAAAATATAATTT-AA
65 TTCTTATATGAATTTACTTAAAATCATAATATATGATACTATATAATATAATTTGAA
72207499 CATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAATCAATA
1 -ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAATCAATA
72207564 TTCTTATATGAATTTACTTAAAATCATAATATATGATACTATATAATATAATTTGAA
65 TTCTTATATGAATTTACTTAAAATCATAATATATGATACTATATAATATAATTTGAA
72207621 ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAATCAATAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAATCAATAT
72207686 TCTTATATGAATTTACTTAAAATCATAATATATGATACTATATAATATAATTTGAA
66 TCTTATATGAATTTACTTAAAATCATAATATATGATACTATATAATATAATTTGAA
*
72207742 ATAATTATTATTAACTATATTTTAATTAAAATATATGATTTAATAAAATT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
72207792 TAAAATAATT
Statistics
Matches: 284, Mismatches: 4, Indels: 6
0.97 0.01 0.02
Matches are distributed among these distances:
119 17 0.06
120 56 0.20
121 209 0.74
122 2 0.01
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.45
Consensus pattern (121 bp):
ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAATCAATAT
TCTTATATGAATTTACTTAAAATCATAATATATGATACTATATAATATAATTTGAA
Found at i:72207893 original size:91 final size:90
Alignment explanation
Indices: 72207798--72208013 Score: 333
Period size: 91 Copynumber: 2.4 Consensus size: 90
72207788 AATTTAAAAT
* * * *
72207798 AATTATTACTAATAAATTTTCTTATATGAATTTGTATAATTTAATATAATTATTATTAAATATAA
1 AATTATTA-TAATAAATATTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAA
*
72207863 TTTAGTAATAATATATAATTTCATAA
65 TTTAATAATAATATATAATTTCATAA
*
72207889 AATTATTGATAATAAATATTCTTATATGAATATATATAATTTAAAATAATTAATATTAAATATAA
1 AATTATT-ATAATAAATATTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAA
*
72207954 TTTAATAATGATATATAATTTCATAA
65 TTTAATAATAATATATAATTTCATAA
*
72207980 AATTCTTAATAATAAATATTCTTATATGAATTTA
1 AATTATT-ATAATAAATATTCTTATATGAATTTA
72208014 CTAAAATCAT
Statistics
Matches: 114, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
91 113 0.99
92 1 0.01
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (90 bp):
AATTATTATAATAAATATTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAAT
TTAATAATAATATATAATTTCATAA
Found at i:72207925 original size:47 final size:47
Alignment explanation
Indices: 72207798--72208010 Score: 180
Period size: 44 Copynumber: 4.6 Consensus size: 47
72207788 AATTTAAAAT
* * * * *
72207798 AATTATTACTAATAAATTTTCTTATATGAAT-TTGTATAATTTAATAT
1 AATTATTA-TAATAAATATTCTTATATGAATAATATATAATTTCATAA
**
72207845 AATTATTAT--TAAATATAATT-TA-GTAATAATATATAATTTCATAA
1 AATTATTATAATAAATATTCTTATATG-AATAATATATAATTTCATAA
72207889 AATTATTGATAATAAATATTCTTATATGAAT-ATATATAA-TT--TAA
1 AATTATT-ATAATAAATATTCTTATATGAATAATATATAATTTCATAA
* * *
72207933 AATAATTAATATTAAATATAAT-TTA-AT-AATGATATATAATTTCATAA
1 AATTATT-ATAATAAATAT--TCTTATATGAATAATATATAATTTCATAA
*
72207980 AATTCTTAATAATAAATATTCTTATATGAAT
1 AATTATT-ATAATAAATATTCTTATATGAAT
72208011 TTACTAAAAT
Statistics
Matches: 135, Mismatches: 15, Indels: 31
0.75 0.08 0.17
Matches are distributed among these distances:
42 1 0.01
43 8 0.06
44 56 0.41
45 8 0.06
46 7 0.05
47 46 0.34
48 8 0.06
49 1 0.01
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (47 bp):
AATTATTATAATAAATATTCTTATATGAATAATATATAATTTCATAA
Found at i:72248859 original size:41 final size:41
Alignment explanation
Indices: 72248783--72248866 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
72248773 GATAAGAGAT
72248783 AAAACCGATCGAGCTTTCAATTCTCAAATTCAAATTTATAG
1 AAAACCGATCGAGCTTTCAATTCTCAAATTCAAATTTATAG
72248824 AAAACCGATCGAGCTTTCAATTCTCAAATTCAAATTTATAG
1 AAAACCGATCGAGCTTTCAATTCTCAAATTCAAATTTATAG
72248865 AA
1 AA
72248867 GACTATTTCC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (41 bp):
AAAACCGATCGAGCTTTCAATTCTCAAATTCAAATTTATAG
Found at i:72270750 original size:19 final size:20
Alignment explanation
Indices: 72270710--72270753 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
72270700 TGAATTTTTT
*
72270710 AATTTAAAAAATAGAAATTA
1 AATTTAAAAAATAGAAACTA
72270730 AATTTAAAAAA-A-AAGACTA
1 AATTTAAAAAATAGAA-ACTA
72270749 AATTT
1 AATTT
72270754 TAAATATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 2 0.09
19 9 0.41
20 11 0.50
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.30
Consensus pattern (20 bp):
AATTTAAAAAATAGAAACTA
Found at i:72271181 original size:28 final size:28
Alignment explanation
Indices: 72271141--72271194 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
72271131 AATTTCAATC
*
72271141 CTTAGATATTTTGATTTTTTAGTAAATT
1 CTTAAATATTTTGATTTTTTAGTAAATT
72271169 CTTAAATATTTTGATTTTTTAGTAAA
1 CTTAAATATTTTGATTTTTTAGTAAA
72271195 GTATTAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.31, C:0.04, G:0.09, T:0.56
Consensus pattern (28 bp):
CTTAAATATTTTGATTTTTTAGTAAATT
Found at i:72271201 original size:28 final size:28
Alignment explanation
Indices: 72271146--72271202 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
72271136 CAATCCTTAG
* *
72271146 ATATTTTGATTTTTTAGTAAATTCTTAA
1 ATATTTTGATTTTTTAGTAAAGTATTAA
72271174 ATATTTTGATTTTTTAGTAAAGTATTAA
1 ATATTTTGATTTTTTAGTAAAGTATTAA
72271202 A
1 A
72271203 AAATTTAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.35, C:0.02, G:0.09, T:0.54
Consensus pattern (28 bp):
ATATTTTGATTTTTTAGTAAAGTATTAA
Found at i:72271236 original size:30 final size:29
Alignment explanation
Indices: 72271157--72271276 Score: 95
Period size: 30 Copynumber: 4.1 Consensus size: 29
72271147 TATTTTGATT
* **
72271157 TTTTAGTAAATTCTTAAATATTT--TGATT
1 TTTTAGTAAATTCTTAAAAATTTAAT-AAA
* *
72271185 TTTTAGTAAAGTATTAAAAAATTTAATAAA
1 TTTTAGTAAATTCTT-AAAAATTTAATAAA
* *
72271215 TCTTTAG-ATATT-TTCATAAAATTTTATAAA
1 T-TTTAGTAAATTCTT-A-AAAATTTAATAAA
72271245 TTTTAGTAAATTCTTAAAAATATTAATAAA
1 TTTTAGTAAATTCTTAAAAAT-TTAATAAA
72271275 TT
1 TT
72271277 AACCTTTCAT
Statistics
Matches: 73, Mismatches: 11, Indels: 14
0.74 0.11 0.14
Matches are distributed among these distances:
28 13 0.18
29 20 0.27
30 32 0.44
31 8 0.11
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.48
Consensus pattern (29 bp):
TTTTAGTAAATTCTTAAAAATTTAATAAA
Found at i:72271265 original size:20 final size:20
Alignment explanation
Indices: 72271198--72271276 Score: 63
Period size: 20 Copynumber: 4.0 Consensus size: 20
72271188 TAGTAAAGTA
*
72271198 TTAAAAAATTTAATAAA-TC
1 TTAAAAATTTTAATAAATTC
* * *
72271217 TTTAGATATTTTCATAAAATT-
1 -TTAAAAATTTTAAT-AAATTC
* *
72271238 TTATAAATTTTAGTAAATTC
1 TTAAAAATTTTAATAAATTC
*
72271258 TTAAAAATATTAATAAATT
1 TTAAAAATTTTAATAAATT
72271277 AACCTTTCAT
Statistics
Matches: 45, Mismatches: 11, Indels: 6
0.73 0.18 0.10
Matches are distributed among these distances:
19 5 0.11
20 36 0.80
21 3 0.07
22 1 0.02
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.46
Consensus pattern (20 bp):
TTAAAAATTTTAATAAATTC
Found at i:72289471 original size:26 final size:26
Alignment explanation
Indices: 72289430--72289485 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
72289420 ACATTAAACA
72289430 AAATAATATAAACAAACACAATTTT-
1 AAATAATATAAACAAACACAATTTTG
* *
72289455 AAATAA-ATAAACTCAAATATAATTTTG
1 AAATAATATAAA--CAAACACAATTTTG
72289482 AAAT
1 AAAT
72289486 TATTAACGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 5 0.19
25 6 0.23
26 11 0.42
27 4 0.15
ACGTcount: A:0.59, C:0.09, G:0.02, T:0.30
Consensus pattern (26 bp):
AAATAATATAAACAAACACAATTTTG
Found at i:72289802 original size:15 final size:15
Alignment explanation
Indices: 72289782--72289831 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
72289772 AATAAATAAA
72289782 TGAATCGAACCGAAT
1 TGAATCGAACCGAAT
* *
72289797 TGAATCAAATCGAAT
1 TGAATCGAACCGAAT
*
72289812 CGAATCGAACCGAAT
1 TGAATCGAACCGAAT
72289827 TGAAT
1 TGAAT
72289832 ATAAATTAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.22
Consensus pattern (15 bp):
TGAATCGAACCGAAT
Found at i:72289807 original size:5 final size:5
Alignment explanation
Indices: 72289783--72289831 Score: 53
Period size: 5 Copynumber: 9.8 Consensus size: 5
72289773 ATAAATAAAT
* * * * *
72289783 GAATC GAACC GAATT GAATC AAATC GAATC GAATC GAACC GAATT GAAT
1 GAATC GAATC GAATC GAATC GAATC GAATC GAATC GAATC GAATC GAAT
72289832 ATAAATTAAA
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.20
Consensus pattern (5 bp):
GAATC
Found at i:72291292 original size:31 final size:30
Alignment explanation
Indices: 72291224--72291294 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 30
72291214 ATTTGGGCTA
* * *
72291224 AGACTGAAATTTTAAAATTCAAAAAGTATAT
1 AGACT-AAATTTGAAAATTCAAAAAATACAT
72291255 -GAACTAAATTTGACAAATTCAAAAAATACAT
1 AG-ACTAAATTTGA-AAATTCAAAAAATACAT
72291286 AGACTAAAT
1 AGACTAAAT
72291295 ACATAATTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
30 8 0.24
31 25 0.74
32 1 0.03
ACGTcount: A:0.54, C:0.10, G:0.08, T:0.28
Consensus pattern (30 bp):
AGACTAAATTTGAAAATTCAAAAAATACAT
Found at i:72295183 original size:60 final size:60
Alignment explanation
Indices: 72295106--72295230 Score: 139
Period size: 60 Copynumber: 2.1 Consensus size: 60
72295096 TGACAAAAAC
*
72295106 AAAAAACAAAATTTAATAGTCGAG-TCAACATTTTATAACTTTTCATGGTTA-AGTGA-TCA
1 AAAAAACAAAATTTAATAGT-GAGATCAACATTTTATAACTTTTCATAGTTAGA-TGACTCA
* * * * * *
72295165 AAAAAAGAAATTTATAATAGTTAGATGATCATTTTATAACTTTTTATAGTTAGATGACTCA
1 AAAAAACAAAATT-TAATAGTGAGATCAACATTTTATAACTTTTCATAGTTAGATGACTCA
72295226 AAAAA
1 AAAAA
72295231 TATTACTAAT
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
59 13 0.24
60 33 0.60
61 9 0.16
ACGTcount: A:0.45, C:0.09, G:0.11, T:0.35
Consensus pattern (60 bp):
AAAAAACAAAATTTAATAGTGAGATCAACATTTTATAACTTTTCATAGTTAGATGACTCA
Found at i:72305095 original size:25 final size:25
Alignment explanation
Indices: 72305067--72305119 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
72305057 TCATCAAAGT
*
72305067 TTCCTGATTAAAGGCTCTTATGAGC
1 TTCCTGATTAAAGGCTCTTAGGAGC
* *
72305092 TTCCTGATTAATGGCTCTTCGGAGC
1 TTCCTGATTAAAGGCTCTTAGGAGC
72305117 TTC
1 TTC
72305120 TCGATATTGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.38
Consensus pattern (25 bp):
TTCCTGATTAAAGGCTCTTAGGAGC
Found at i:72305151 original size:24 final size:24
Alignment explanation
Indices: 72305124--72305180 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
72305114 AGCTTCTCGA
*
72305124 TATTGGCTCGCT-TGAACTTTCCGT
1 TATTGGCTCG-TATGAACTTCCCGT
* *
72305148 TATTGTCTCGTATGAGCTTCCCGT
1 TATTGGCTCGTATGAACTTCCCGT
*
72305172 TAATGGCTC
1 TATTGGCTC
72305181 TCCGGAGCTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 1 0.04
24 26 0.96
ACGTcount: A:0.14, C:0.25, G:0.21, T:0.40
Consensus pattern (24 bp):
TATTGGCTCGTATGAACTTCCCGT
Found at i:72309287 original size:25 final size:25
Alignment explanation
Indices: 72309257--72309325 Score: 86
Period size: 24 Copynumber: 2.8 Consensus size: 25
72309247 GTTTTAATGT
72309257 TCAATTTGGTATTTGAGTTTTTTTC
1 TCAATTTGGTATTTGAGTTTTTTTC
* * * *
72309282 TCAATTTGATATCTAAG-CTTTTTC
1 TCAATTTGGTATTTGAGTTTTTTTC
*
72309306 TCAATTTGGCATTTGAGTTT
1 TCAATTTGGTATTTGAGTTT
72309326 AGCTTAAATA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
24 19 0.56
25 15 0.44
ACGTcount: A:0.20, C:0.12, G:0.14, T:0.54
Consensus pattern (25 bp):
TCAATTTGGTATTTGAGTTTTTTTC
Found at i:72310044 original size:25 final size:25
Alignment explanation
Indices: 72309973--72310047 Score: 73
Period size: 27 Copynumber: 2.9 Consensus size: 25
72309963 ATATTATCCC
**
72309973 AAAAAATATAGATACTTAATTGAGA
1 AAAAAATATAGATACCAAATTGAGA
*
72309998 AAAAAA-ATCA-AAACTCAAAAATTGAGA
1 AAAAAATAT-AGATAC-C--AAATTGAGA
72310025 AAAAAATATAGATACCAAATTGA
1 AAAAAATATAGATACCAAATTGA
72310048 ACATTAAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
24 5 0.12
25 14 0.35
27 16 0.40
28 5 0.12
ACGTcount: A:0.61, C:0.08, G:0.09, T:0.21
Consensus pattern (25 bp):
AAAAAATATAGATACCAAATTGAGA
Found at i:72320827 original size:4 final size:4
Alignment explanation
Indices: 72320818--72320865 Score: 51
Period size: 4 Copynumber: 11.2 Consensus size: 4
72320808 TGGTGTAATG
* *
72320818 GGTC GGTC GGTA GGTC GGGTC GGTC GGTA GGTC GGGTC GGGTC GGTC G
1 GGTC GGTC GGTC GGTC -GGTC GGTC GGTC GGTC -GGTC -GGTC GGTC G
72320866 ACCATGGGCT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
4 25 0.66
5 13 0.34
ACGTcount: A:0.04, C:0.19, G:0.54, T:0.23
Consensus pattern (4 bp):
GGTC
Found at i:72320839 original size:17 final size:17
Alignment explanation
Indices: 72320817--72320863 Score: 85
Period size: 17 Copynumber: 2.7 Consensus size: 17
72320807 TTGGTGTAAT
72320817 GGGTCGGTCGGTAGGTC
1 GGGTCGGTCGGTAGGTC
72320834 GGGTCGGTCGGTAGGTC
1 GGGTCGGTCGGTAGGTC
72320851 GGGTCGGGTCGGT
1 GGGTC-GGTCGGT
72320864 CGACCATGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
17 22 0.76
18 7 0.24
ACGTcount: A:0.04, C:0.17, G:0.55, T:0.23
Consensus pattern (17 bp):
GGGTCGGTCGGTAGGTC
Found at i:72323136 original size:40 final size:40
Alignment explanation
Indices: 72323055--72323137 Score: 112
Period size: 40 Copynumber: 2.1 Consensus size: 40
72323045 GTTTTTTTTT
* * *
72323055 TTGTCTAAGTTAGATTCTAAATTTGACAATTGTTCTCACA
1 TTGTCTAAGTAAGACTCTAAATTTGACAATTATTCTCACA
* * *
72323095 TTGTCTAGGTAAGACTCTAAATTTGACAATTATTTTTACA
1 TTGTCTAAGTAAGACTCTAAATTTGACAATTATTCTCACA
72323135 TTG
1 TTG
72323138 AGGCATGGAT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (40 bp):
TTGTCTAAGTAAGACTCTAAATTTGACAATTATTCTCACA
Found at i:72323901 original size:15 final size:16
Alignment explanation
Indices: 72323883--72323923 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
72323873 TATGTGAATT
*
72323883 TAAAAATTTA-TTTAA
1 TAAAAATTAATTTTAA
72323898 TAAAATATTAATTTTAA
1 TAAAA-ATTAATTTTAA
72323915 -AAAAATTAA
1 TAAAAATTAA
72323924 AATCATATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 10 0.43
16 8 0.35
17 5 0.22
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAAAAATTAATTTTAA
Found at i:72327912 original size:45 final size:46
Alignment explanation
Indices: 72327845--72327939 Score: 147
Period size: 45 Copynumber: 2.1 Consensus size: 46
72327835 AATGAACATC
*
72327845 AAATCAAATAACTTACACTGAAACGAACAT-AAAAATACAAAAGAA
1 AAATCAAATAACTCACACTGAAACGAACATAAAAAATACAAAAGAA
* *
72327890 AAATCAAATAACTCACAGTGAAACGAATATAAAAAAATACAAAAGAA
1 AAATCAAATAACTCACACTGAAACGAACAT-AAAAAATACAAAAGAA
72327937 AAA
1 AAA
72327940 CGAATCAAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
45 27 0.60
47 18 0.40
ACGTcount: A:0.64, C:0.14, G:0.07, T:0.15
Consensus pattern (46 bp):
AAATCAAATAACTCACACTGAAACGAACATAAAAAATACAAAAGAA
Found at i:72328376 original size:16 final size:18
Alignment explanation
Indices: 72328355--72328396 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 18
72328345 CATGGACACC
72328355 TATAAAAATAA-TCT-AT
1 TATAAAAATAAGTCTAAT
72328371 TAT-AAAATAAGTCTAAT
1 TATAAAAATAAGTCTAAT
*
72328388 CATAAAAAT
1 TATAAAAAT
72328397 GGGTTTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 7 0.32
16 6 0.27
17 4 0.18
18 5 0.23
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.33
Consensus pattern (18 bp):
TATAAAAATAAGTCTAAT
Found at i:72343705 original size:23 final size:24
Alignment explanation
Indices: 72343679--72343726 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
72343669 GTATTTTTTA
72343679 AATTGATGAATTTT-AATTTTAAT
1 AATTGATGAATTTTAAATTTTAAT
**
72343702 AATTTTTGAATTTTAAAATTTTAAT
1 AATTGATGAATTTT-AAATTTTAAT
72343727 CATGGGTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 12 0.57
25 9 0.43
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (24 bp):
AATTGATGAATTTTAAATTTTAAT
Found at i:72343708 original size:16 final size:16
Alignment explanation
Indices: 72343689--72343723 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
72343679 AATTGATGAA
72343689 TTTT-AATTTTAATAAT
1 TTTTGAATTTTAA-AAT
72343705 TTTTGAATTTTAAAAT
1 TTTTGAATTTTAAAAT
72343721 TTT
1 TTT
72343724 AATCATGGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (16 bp):
TTTTGAATTTTAAAAT
Found at i:72343708 original size:31 final size:31
Alignment explanation
Indices: 72343644--72343713 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
72343634 TTTTTTTTGC
* * * *
72343644 TTTAATTTGATTAATTTTAAATTTTGTATTT
1 TTTAAATTGATGAATTTTAAATTTTATAATT
72343675 TTTAAATTGATGAATTTT-AATTTTAATAATT
1 TTTAAATTGATGAATTTTAAATTTT-ATAATT
*
72343706 TTTGAATT
1 TTTAAATT
72343714 TTAAAATTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
30 6 0.18
31 27 0.82
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (31 bp):
TTTAAATTGATGAATTTTAAATTTTATAATT
Found at i:72349073 original size:15 final size:15
Alignment explanation
Indices: 72349053--72349084 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
72349043 ACTCCAGGAA
72349053 ATGGTATGATTAGAT
1 ATGGTATGATTAGAT
72349068 ATGGTATGATTAGAT
1 ATGGTATGATTAGAT
72349083 AT
1 AT
72349085 AACAATGCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.25, T:0.41
Consensus pattern (15 bp):
ATGGTATGATTAGAT
Found at i:72355524 original size:18 final size:15
Alignment explanation
Indices: 72355490--72355521 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
72355480 GTGAAAATAA
72355490 TAATAATTGGATGAC
1 TAATAATTGGATGAC
72355505 TAATAATTGGATGAC
1 TAATAATTGGATGAC
72355520 TA
1 TA
72355522 CTAGTGTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.06, G:0.19, T:0.34
Consensus pattern (15 bp):
TAATAATTGGATGAC
Found at i:72368801 original size:26 final size:25
Alignment explanation
Indices: 72368771--72368819 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
72368761 AATTATACAA
72368771 ATTCACCGAGTTGAAATATCCAAACC
1 ATTCACCGAGTTGAAATA-CCAAACC
* *
72368797 ATTCACTGAGTTTAAATACCAAA
1 ATTCACCGAGTTGAAATACCAAA
72368820 TACCATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.27
Consensus pattern (25 bp):
ATTCACCGAGTTGAAATACCAAACC
Found at i:72385652 original size:17 final size:17
Alignment explanation
Indices: 72385630--72385681 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
72385620 TTTATACGAT
72385630 AATATATCTAAAAACTA
1 AATATATCTAAAAACTA
*
72385647 AATATAT-T-----TTA
1 AATATATCTAAAAACTA
72385658 AATATATCTAAAAACTA
1 AATATATCTAAAAACTA
72385675 AATATAT
1 AATATAT
72385682 TTTAAATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 12
0.66 0.05 0.29
Matches are distributed among these distances:
11 9 0.33
12 1 0.04
16 1 0.04
17 16 0.59
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.37
Consensus pattern (17 bp):
AATATATCTAAAAACTA
Found at i:72385662 original size:28 final size:28
Alignment explanation
Indices: 72385630--72385689 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
72385620 TTTATACGAT
72385630 AATATATCTAAAAACTAAATATATTTTA
1 AATATATCTAAAAACTAAATATATTTTA
72385658 AATATATCTAAAAACTAAATATATTTTA
1 AATATATCTAAAAACTAAATATATTTTA
72385686 AATA
1 AATA
72385690 ATTGAAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (28 bp):
AATATATCTAAAAACTAAATATATTTTA
Found at i:72390242 original size:26 final size:27
Alignment explanation
Indices: 72390212--72390266 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
72390202 AACAATACAA
*
72390212 ATTCACCGAGTTGAAATACCCAA-ACC
1 ATTCACCGAGTTGAAATACCAAATACC
* *
72390238 ATTCACTGAGTTTAAATACCAAATACC
1 ATTCACCGAGTTGAAATACCAAATACC
72390265 AT
1 AT
72390267 ATGAGCATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.40, C:0.25, G:0.09, T:0.25
Consensus pattern (27 bp):
ATTCACCGAGTTGAAATACCAAATACC
Found at i:72396529 original size:18 final size:18
Alignment explanation
Indices: 72396502--72396594 Score: 114
Period size: 18 Copynumber: 5.2 Consensus size: 18
72396492 CCCAACTACT
* * *
72396502 GTATATGTGAACAGTATC
1 GTATACGTGAATAGTACC
*
72396520 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
*
72396538 GTATACGTGAATAGTACT
1 GTATACGTGAATAGTACC
*
72396556 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
* *
72396574 GTATATGTGAATAGTATC
1 GTATACGTGAATAGTACC
72396592 GTA
1 GTA
72396595 AACGGTCGTA
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 64 1.00
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.32
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:72396560 original size:36 final size:36
Alignment explanation
Indices: 72396502--72396594 Score: 152
Period size: 36 Copynumber: 2.6 Consensus size: 36
72396492 CCCAACTACT
*
72396502 GTATATGTGAACAGTATCGTATACGTGAATAGTGCC
1 GTATATGTGAATAGTATCGTATACGTGAATAGTGCC
*
72396538 GTATACGTGAATAGTA-CTGTATACGTGAATAGTGCC
1 GTATATGTGAATAGTATC-GTATACGTGAATAGTGCC
72396574 GTATATGTGAATAGTATCGTA
1 GTATATGTGAATAGTATCGTA
72396595 AACGGTCGTA
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
35 1 0.02
36 50 0.96
37 1 0.02
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.32
Consensus pattern (36 bp):
GTATATGTGAATAGTATCGTATACGTGAATAGTGCC
Found at i:72408793 original size:28 final size:28
Alignment explanation
Indices: 72408762--72408817 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
72408752 TCTATCCATA
72408762 AACAAAATTTTACCTAAAATAACAAAAT
1 AACAAAATTTTACCTAAAATAACAAAAT
72408790 AACAAAATTTTACCTAAAATAACAAAAT
1 AACAAAATTTTACCTAAAATAACAAAAT
72408818 TTTTAACTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.61, C:0.14, G:0.00, T:0.25
Consensus pattern (28 bp):
AACAAAATTTTACCTAAAATAACAAAAT
Found at i:72408830 original size:21 final size:20
Alignment explanation
Indices: 72408781--72408831 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
72408771 TTACCTAAAA
72408781 TAAC-AAAATAACAAAATTT
1 TAACTAAAATAACAAAATTT
*
72408800 TACCTAAAATAACAAAATTTT
1 TAACTAAAATAACAAAA-TTT
*
72408821 TAACTTAAATA
1 TAACTAAAATA
72408832 GCATTAATTG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 3 0.11
20 12 0.44
21 12 0.44
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (20 bp):
TAACTAAAATAACAAAATTT
Found at i:72408945 original size:23 final size:23
Alignment explanation
Indices: 72408930--72408986 Score: 87
Period size: 23 Copynumber: 2.5 Consensus size: 23
72408920 CAATATATGG
72408930 TAAATAAGGTAATCAAATATGCC
1 TAAATAAGGTAATCAAATATGCC
*
72408953 TTAATAAGGTAATCAAATATGCC
1 TAAATAAGGTAATCAAATATGCC
**
72408976 TTCATAAGGTA
1 TAAATAAGGTA
72408987 TTGTTAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.44, C:0.12, G:0.14, T:0.30
Consensus pattern (23 bp):
TAAATAAGGTAATCAAATATGCC
Found at i:72409031 original size:20 final size:20
Alignment explanation
Indices: 72409003--72409043 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
72408993 ATTTGTTATT
72409003 TTTTAATAAAAAATTTTATAA
1 TTTTAAT-AAAAATTTTATAA
*
72409024 TTTT-ATAAAATTTTTATAA
1 TTTTAATAAAAATTTTATAA
72409043 T
1 T
72409044 GTTTTTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 13 0.68
20 2 0.11
21 4 0.21
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
TTTTAATAAAAATTTTATAA
Found at i:72409054 original size:11 final size:10
Alignment explanation
Indices: 72409016--72409066 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
72409006 TAATAAAAAA
72409016 TTTTATAATT
1 TTTTATAATT
* *
72409026 TTATA-AAAT
1 TTTTATAATT
72409035 TTTTATAATGT
1 TTTTATAAT-T
72409046 TTTTATAATT
1 TTTTATAATT
*
72409056 TTTAATAATT
1 TTTTATAATT
72409066 T
1 T
72409067 AAAATTTTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
9 7 0.21
10 17 0.50
11 10 0.29
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (10 bp):
TTTTATAATT
Found at i:72414885 original size:128 final size:128
Alignment explanation
Indices: 72414657--72414904 Score: 451
Period size: 128 Copynumber: 1.9 Consensus size: 128
72414647 TGATGCTCAA
72414657 CAAGGCTAAGAACATTGCTTTCTAGTGGGATTTGCTAATAATCTATTGTTGGGAACTTGATGAGC
1 CAAGGCTAAGAACATTGCTTTCTAGTGGGATTTGCTAATAATCTATTGTTGGGAACTTGATGAGC
*
72414722 CCGACACACCTATTATAGAAGACCTAGGACCTACAAGTAGAGGTGCTCATAGGCCGGGCCGGG
66 CCGACACACCTATTATAGAAGACCTAGAACCTACAAGTAGAGGTGCTCATAGGCCGGGCCGGG
* *
72414785 CAAGGCTAAGAACATTGCTTTGTAGTGGGATTTGCTAATAATCTGTTGTTGGGAACTTGATGAGC
1 CAAGGCTAAGAACATTGCTTTCTAGTGGGATTTGCTAATAATCTATTGTTGGGAACTTGATGAGC
* *
72414850 CTGACACACCTATTATAGAAGACCTAGAACCTACAAGTAGAGGTGCTCATGGGCC
66 CCGACACACCTATTATAGAAGACCTAGAACCTACAAGTAGAGGTGCTCATAGGCC
72414905 TAATAATCTA
Statistics
Matches: 115, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
128 115 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (128 bp):
CAAGGCTAAGAACATTGCTTTCTAGTGGGATTTGCTAATAATCTATTGTTGGGAACTTGATGAGC
CCGACACACCTATTATAGAAGACCTAGAACCTACAAGTAGAGGTGCTCATAGGCCGGGCCGGG
Found at i:72416510 original size:31 final size:30
Alignment explanation
Indices: 72416469--72416543 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 30
72416459 GCTTTAGTTT
* *
72416469 CTATA-TTTTAATTTAATTAAATTTGGTCT
1 CTATACTTTTAATTTAATTAAATTTAGTCC
* *
72416498 CTATACTTTTTAAATTAGTTAAATTTAGTCC
1 CTATAC-TTTTAATTTAATTAAATTTAGTCC
72416529 CTATACTTTTAATTT
1 CTATACTTTTAATTT
72416544 TTAGTTTTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
29 5 0.13
30 8 0.21
31 26 0.67
ACGTcount: A:0.31, C:0.11, G:0.05, T:0.53
Consensus pattern (30 bp):
CTATACTTTTAATTTAATTAAATTTAGTCC
Found at i:72421303 original size:29 final size:31
Alignment explanation
Indices: 72421256--72421315 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 31
72421246 TTTAGTTATC
*
72421256 TTTAAAATTGATAAAAATT-TAATTTAATTT
1 TTTAAAATAGATAAAAATTATAATTTAATTT
72421286 TTTAAAATAG-TAAAAATTATAATTTAATTT
1 TTTAAAATAGATAAAAATTATAATTTAATTT
72421316 CGACTTTTCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 8 0.29
30 20 0.71
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (31 bp):
TTTAAAATAGATAAAAATTATAATTTAATTT
Found at i:72425431 original size:651 final size:650
Alignment explanation
Indices: 72424160--72425457 Score: 2299
Period size: 651 Copynumber: 2.0 Consensus size: 650
72424150 GTCCCCATGG
* *
72424160 CATACCATTGGGGAACACTATTACCAGGGAATGCTTGAACAGGGTGGGAGTGAGGCGTCTGAAGC
1 CATACCATTGGGGAACACTATTACCAGGGAATGCTTCAAAAGGGTGGGAGTGAGGCGTCTGAAGC
72424225 ACAATACAACACAAACACACCACCATTGTCGCACAGTGATAATCAGATGAACTTAATGCTCAGTG
66 ACAATACAACACAAACACACCACCATTGTCGCACAGTGATAATCAGATGAACTTAATGCTCAGTG
* * *
72424290 GGAGCAACAAAAGAGATGGGGTTTCAGAAGCTGGAGTACAAGTTACTGAAATGAATGATGTTACT
131 GAAGCAACAAAAGAGACGGGGTTTCAGAAGCTGGAGTACAAGGTACTGAAATGAATGATGTTACT
* *
72424355 ATTCCTGTTGATCAAGACCACGAAAGTTTGCTGGCTAGGGAGATGTTGAAGCGTAATTATAGTTC
196 ATTACTGTTGATCAAGACCACGAAAGTTTGCTGGCTAGGGAGATATTGAAGCGTAATTATAGTTC
* *
72424420 CTGGCTATCCGGACTTTTTAACAAGGACAACAACAGTGTGGAAGTTGCACACTTCCATGGTTTAC
261 CTGGCTATCCGGACTTTTTAACAAAGACAACAACAGTGTGGAAGTTGCACACTTCCATGGCTTAC
* *
72424485 AAGAAGCATTGGACGAAACTCGTTATGGGGAAACACCAGACTACCTCAAACGTATCGCAACCCTA
326 AAGAAGCATTGGACAAAACTCGCTATGGGGAAACACCAGACTACCTCAAACGTATCGCAACCCTA
72424550 ATCGAAGTGGATCGTGGAAAAGCTACTAAGTTTGGCCATAAAAATATTGAAGTGCTGGTTTGTGC
391 ATCGAAGTGGATCGTGGAAAAGCTACTAAGTTTGGCCATAAAAATATTGAAGTGCTGGTTTGTGC
* *
72424615 CGCATTCAAAGAGATGGAAGACTGGCGTACACCTAAGGATTCCGGCTGTAACCAGTTGAAAAAGT
456 CGCAATCAAAGAGATGGAAGACTGGCGTACACCTAAGGATTCCGGCTATAACCAGTTGAAAAAGT
*
72424680 GGGCCGCGACGCTCAATATGGGTAAGGAACAAGACTTTGAAGTGAAATTTGCTGATGACACGTTG
521 GGGCCGCGACGCTCAATATGGGTAAGGAACAAGACTTTGAAGTGAAACTTGCTGATGACACGTTG
* *
72424745 AATAATATTTGTCTTGCCTGTTATGCTTCCTTAATGATCTATGGAGGGGATGGTTCAATTCAGTT
586 AATAATATTTGTCTTGCCTGTTATGCTTACTTAATGATCTATGGAGAGGATGGTTCAATTCAGTT
* *
72424810 CATACCATTGGGGAACACTATTACTAGTGGAATGCTTCAAAAGGGTGGGCGTGAGGCGTCTGAAG
1 CATACCATTGGGGAACACTATTACCAG-GGAATGCTTCAAAAGGGTGGGAGTGAGGCGTCTGAAG
*
72424875 CACAATACAATACAAACACACCACCATTGTCGCACAGTGATAATCAGATGAACTTAATGCTCAGT
65 CACAATACAACACAAACACACCACCATTGTCGCACAGTGATAATCAGATGAACTTAATGCTCAGT
72424940 GGAAGCAACAAAAGAGACGGGGTTTCAGAAGCTGGAGTACAAGGTACTGAAATGAATGATGTTAC
130 GGAAGCAACAAAAGAGACGGGGTTTCAGAAGCTGGAGTACAAGGTACTGAAATGAATGATGTTAC
* *
72425005 TATTACTGTTGATCAAGACCACGGAAGTTTGCTGGCTGGGGAGATATTGAAGCGTAATTATAGTT
195 TATTACTGTTGATCAAGACCACGAAAGTTTGCTGGCTAGGGAGATATTGAAGCGTAATTATAGTT
*
72425070 CCTGGCTATCCGGCCTTTTTAACAAAGACAACAACAGTGTGGAAGTTGCACACTTCCATGGCTTA
260 CCTGGCTATCCGGACTTTTTAACAAAGACAACAACAGTGTGGAAGTTGCACACTTCCATGGCTTA
* ** *
72425135 CAAGAAGCATTGGACAAAACTCGCTATGGGGAAACACCAGACTACCTCAAAGGTATCGCGGCTCT
325 CAAGAAGCATTGGACAAAACTCGCTATGGGGAAACACCAGACTACCTCAAACGTATCGCAACCCT
**
72425200 AATCGAAGTGGATCGTGGAAAAGCTACTAAGTTTGGCCATAAAAATATTGAAGTTTTGGTTTGTG
390 AATCGAAGTGGATCGTGGAAAAGCTACTAAGTTTGGCCATAAAAATATTGAAGTGCTGGTTTGTG
72425265 CCGCAATCAAAGAGATGGAAGACTGGCGTACACCTAAGGATTCCGGCTATAACCAGTTGAAAAAG
455 CCGCAATCAAAGAGATGGAAGACTGGCGTACACCTAAGGATTCCGGCTATAACCAGTTGAAAAAG
* *
72425330 TGGGCCGCGACGCTCAATATGGGTAAGGAACAAGATTTTGAAGTGAAACTTGCTGATGACATGTT
520 TGGGCCGCGACGCTCAATATGGGTAAGGAACAAGACTTTGAAGTGAAACTTGCTGATGACACGTT
* *
72425395 GAATAATATTTGTCTTGCCTGTTATGCTTACTTAATGATTTATGGAGAGGATGGTTCAGTTCA
585 GAATAATATTTGTCTTGCCTGTTATGCTTACTTAATGATCTATGGAGAGGATGGTTCAATTCA
72425458 TAAGGTTGCG
Statistics
Matches: 615, Mismatches: 32, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
650 26 0.04
651 589 0.96
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (650 bp):
CATACCATTGGGGAACACTATTACCAGGGAATGCTTCAAAAGGGTGGGAGTGAGGCGTCTGAAGC
ACAATACAACACAAACACACCACCATTGTCGCACAGTGATAATCAGATGAACTTAATGCTCAGTG
GAAGCAACAAAAGAGACGGGGTTTCAGAAGCTGGAGTACAAGGTACTGAAATGAATGATGTTACT
ATTACTGTTGATCAAGACCACGAAAGTTTGCTGGCTAGGGAGATATTGAAGCGTAATTATAGTTC
CTGGCTATCCGGACTTTTTAACAAAGACAACAACAGTGTGGAAGTTGCACACTTCCATGGCTTAC
AAGAAGCATTGGACAAAACTCGCTATGGGGAAACACCAGACTACCTCAAACGTATCGCAACCCTA
ATCGAAGTGGATCGTGGAAAAGCTACTAAGTTTGGCCATAAAAATATTGAAGTGCTGGTTTGTGC
CGCAATCAAAGAGATGGAAGACTGGCGTACACCTAAGGATTCCGGCTATAACCAGTTGAAAAAGT
GGGCCGCGACGCTCAATATGGGTAAGGAACAAGACTTTGAAGTGAAACTTGCTGATGACACGTTG
AATAATATTTGTCTTGCCTGTTATGCTTACTTAATGATCTATGGAGAGGATGGTTCAATTCAGTT
Found at i:72428130 original size:22 final size:22
Alignment explanation
Indices: 72428102--72428170 Score: 129
Period size: 22 Copynumber: 3.1 Consensus size: 22
72428092 ATGTGACACT
*
72428102 TCCCTGGTGTTCTTTCTCTTGA
1 TCCCTGGTGTTCTTTCTCTCGA
72428124 TCCCTGGTGTTCTTTCTCTCGA
1 TCCCTGGTGTTCTTTCTCTCGA
72428146 TCCCTGGTGTTCTTTCTCTCGA
1 TCCCTGGTGTTCTTTCTCTCGA
72428168 TCC
1 TCC
72428171 AACTTTTTAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 46 1.00
ACGTcount: A:0.04, C:0.32, G:0.17, T:0.46
Consensus pattern (22 bp):
TCCCTGGTGTTCTTTCTCTCGA
Found at i:72430315 original size:21 final size:20
Alignment explanation
Indices: 72430268--72430315 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 20
72430258 AGATGATTTG
* *
72430268 ATAAAATTTTATAATTAGCA
1 ATAAAATTTCATAATTAACA
* *
72430288 ATTAAATTTCATCAATTAACC
1 ATAAAATTTCAT-AATTAACA
72430309 ATAAAAT
1 ATAAAAT
72430316 CCGAATTAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.50, C:0.10, G:0.02, T:0.38
Consensus pattern (20 bp):
ATAAAATTTCATAATTAACA
Found at i:72430648 original size:51 final size:51
Alignment explanation
Indices: 72430580--72430686 Score: 207
Period size: 51 Copynumber: 2.1 Consensus size: 51
72430570 CAACGATATT
72430580 ATAAAAATTTATGTAGTAAAAGAAATCCGAAACTACAAAATCCATATTCCC
1 ATAAAAATTTATGTAGTAAAAGAAATCCGAAACTACAAAATCCATATTCCC
72430631 ATAAAAATTTATGTAGTAAAAGAAATCCGAAACTACAAAATCCATATTCCC
1 ATAAAAATTTATGTAGTAAAAGAAATCCGAAACTACAAAATCCATATTCCC
72430682 A-AAAA
1 ATAAAA
72430687 GGTAACACTA
Statistics
Matches: 56, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
50 4 0.07
51 52 0.93
ACGTcount: A:0.51, C:0.17, G:0.07, T:0.24
Consensus pattern (51 bp):
ATAAAAATTTATGTAGTAAAAGAAATCCGAAACTACAAAATCCATATTCCC
Found at i:72430699 original size:51 final size:51
Alignment explanation
Indices: 72430593--72430699 Score: 153
Period size: 51 Copynumber: 2.1 Consensus size: 51
72430583 AAAATTTATG
* * **
72430593 TAGTAAAAGAAATCCGAAACTACAAAATCCATATTCCCATAAAAATTTATG
1 TAGTAAAAGAAATCCGAAACTACAAAATCCATATTCCCATAAAAAGTAAAC
*
72430644 TAGTAAAAGAAATCCGAAACTACAAAATCCATATTCCCA-AAAAGGTAACAC
1 TAGTAAAAGAAATCCGAAACTACAAAATCCATATTCCCATAAAAAGTAA-AC
72430695 TAGTA
1 TAGTA
72430700 TTATCATATT
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
50 6 0.12
51 44 0.88
ACGTcount: A:0.50, C:0.19, G:0.09, T:0.22
Consensus pattern (51 bp):
TAGTAAAAGAAATCCGAAACTACAAAATCCATATTCCCATAAAAAGTAAAC
Found at i:72431671 original size:51 final size:51
Alignment explanation
Indices: 72431616--72431752 Score: 175
Period size: 51 Copynumber: 2.7 Consensus size: 51
72431606 TATGGTAACT
*
72431616 AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGG
1 AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGG
* * * ** * * **
72431667 AATCTTATAAGATATTATTTTATAAGATTACATATCTTATCTAAGATATGG
1 AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGG
*
72431718 AATCTTAGAAGATATGATATTATATTCTTAGAGAT
1 AATCTTAGAAGATATGATATTATAATCTTAGAGAT
72431753 TTGATGGTAG
Statistics
Matches: 68, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
51 68 1.00
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.40
Consensus pattern (51 bp):
AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGG
Found at i:72432144 original size:28 final size:28
Alignment explanation
Indices: 72432112--72432171 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 28
72432102 AGCCCCGTGA
*
72432112 CAAGTGGTATCAGAGCTAGAGTTCGAAC
1 CAAGTGGTACCAGAGCTAGAGTTCGAAC
*
72432140 CAAGTGGTACCAGAGCTATAGTTCGAAC
1 CAAGTGGTACCAGAGCTAGAGTTCGAAC
72432168 CAAG
1 CAAG
72432172 AAGTATCCGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.33, C:0.20, G:0.27, T:0.20
Consensus pattern (28 bp):
CAAGTGGTACCAGAGCTAGAGTTCGAAC
Found at i:72432183 original size:28 final size:28
Alignment explanation
Indices: 72432118--72432184 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
72432108 GTGACAAGTG
* **
72432118 GTATCAGAGCTAGAGTTCGAACCAAGTG
1 GTATCCGAGCTAGAGTTCGAACCAAGAA
*
72432146 GTA-CCAGAGCTATAGTTCGAACCAAGAA
1 GTATCC-GAGCTAGAGTTCGAACCAAGAA
72432174 GTATCCGAGCT
1 GTATCCGAGCT
72432185 GTTGGTTCGA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
27 1 0.03
28 30 0.91
29 2 0.06
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (28 bp):
GTATCCGAGCTAGAGTTCGAACCAAGAA
Found at i:72434501 original size:51 final size:51
Alignment explanation
Indices: 72434446--72434582 Score: 175
Period size: 51 Copynumber: 2.7 Consensus size: 51
72434436 TATGGTAACT
*
72434446 AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGG
1 AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGG
* * * ** * * **
72434497 AATCTTATAAGATATTATTTTATAAGATTACATATCTTATCTAAGATATGG
1 AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGG
*
72434548 AATCTTAGAAGATATGATATTATATTCTTAGAGAT
1 AATCTTAGAAGATATGATATTATAATCTTAGAGAT
72434583 TTGATGGTAG
Statistics
Matches: 68, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
51 68 1.00
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.40
Consensus pattern (51 bp):
AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGG
Found at i:72436579 original size:21 final size:21
Alignment explanation
Indices: 72436555--72436605 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
72436545 TTTATTTTAC
72436555 TTTCTTATTACT-TTGCAATCA
1 TTTCTT-TTACTATTGCAATCA
*
72436576 TTTCTTTTATTATTGCAATCA
1 TTTCTTTTACTATTGCAATCA
72436597 TTTCTTTTA
1 TTTCTTTTA
72436606 TTACTACTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
20 4 0.14
21 24 0.86
ACGTcount: A:0.22, C:0.16, G:0.04, T:0.59
Consensus pattern (21 bp):
TTTCTTTTACTATTGCAATCA
Found at i:72436606 original size:21 final size:21
Alignment explanation
Indices: 72436567--72436608 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
72436557 TCTTATTACT
72436567 TTGCAATCATTTCTTTTATTA
1 TTGCAATCATTTCTTTTATTA
72436588 TTGCAATCATTTCTTTTATTA
1 TTGCAATCATTTCTTTTATTA
72436609 CTACTATCGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.05, T:0.57
Consensus pattern (21 bp):
TTGCAATCATTTCTTTTATTA
Found at i:72445979 original size:18 final size:18
Alignment explanation
Indices: 72445924--72445988 Score: 69
Period size: 18 Copynumber: 3.4 Consensus size: 18
72445914 CCGAATATAA
72445924 TAAATATATATTTTTATTTTT
1 TAAA-ATAT-TTTTTA-TTTT
*
72445945 TAAAAT-TTTAATATATTTT
1 TAAAATATTT--TTTATTTT
72445964 TAAAATATTTTTTATTTT
1 TAAAATATTTTTTATTTT
72445982 TAAAATA
1 TAAAATA
72445989 AATTTTTGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
18 16 0.41
19 11 0.28
20 8 0.21
21 4 0.10
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TAAAATATTTTTTATTTT
Found at i:72445994 original size:19 final size:18
Alignment explanation
Indices: 72445958--72445995 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
72445948 AATTTTAATA
*
72445958 TATTTTTAAAATATTTTT
1 TATTTTTAAAATAATTTT
72445976 TATTTTTAAAATAAATTTT
1 TATTTTTAAAAT-AATTTT
72445995 T
1 T
72445996 GGTGTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TATTTTTAAAATAATTTT
Found at i:72448161 original size:29 final size:30
Alignment explanation
Indices: 72448104--72448170 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
72448094 TTTTATAAAT
* *
72448104 AATTGATATTTATTTATTAAAATATTTAA-
1 AATTTATATTTATATATTAAAATATTTAAC
72448133 AATTTATATTTCATATATTAAAATA-TTAAC
1 AATTTATATTT-ATATATTAAAATATTTAAC
*
72448163 AAGTTATA
1 AATTTATA
72448171 ATAATTTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 14 0.42
30 19 0.58
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (30 bp):
AATTTATATTTATATATTAAAATATTTAAC
Found at i:72452415 original size:84 final size:84
Alignment explanation
Indices: 72452294--72452448 Score: 238
Period size: 84 Copynumber: 1.8 Consensus size: 84
72452284 ACTAGCGCGG
* * *
72452294 ACGGACTGCTGTTGTCCAGCCTGGAATCTACAAGAAACCTTCGACAGCCTGGGAGGGCGACGCCT
1 ACGGACTGCCGTTGTCCAGCCTGGAATATACAAGAAACCTTCGACAGCCTGGGAGGGCGACACCT
*
72452359 GAAGTACAAGGTGGGACGA
66 CAAGTACAAGGTGGGACGA
* * * *
72452378 ACGGACTGCCGTTGTCCAGCCTTGATTATACAGGAAACCTTCGACAGCTTGGGAGGGCGACACCT
1 ACGGACTGCCGTTGTCCAGCCTGGAATATACAAGAAACCTTCGACAGCCTGGGAGGGCGACACCT
72452443 CAAGTA
66 CAAGTA
72452449 AAAGATGGCG
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
84 63 1.00
ACGTcount: A:0.26, C:0.26, G:0.30, T:0.19
Consensus pattern (84 bp):
ACGGACTGCCGTTGTCCAGCCTGGAATATACAAGAAACCTTCGACAGCCTGGGAGGGCGACACCT
CAAGTACAAGGTGGGACGA
Found at i:72452468 original size:84 final size:84
Alignment explanation
Indices: 72452294--72452470 Score: 230
Period size: 84 Copynumber: 2.1 Consensus size: 84
72452284 ACTAGCGCGG
* * *
72452294 ACGGACTGCTGTTGTCCAGCCTGGAATCTACAAGAAACCTTCGACAGCCTGGGAGGGCGACGCCT
1 ACGGACTGCCGTTGTCCAGCCTGGAATATACAAGAAACCTTCGACAGCCTGGGAGGGCGACACCT
* * * *
72452359 GAAGTACAAGGTGGGACGA
66 CAAGTAAAAGATGGGACCA
* * * *
72452378 ACGGACTGCCGTTGTCCAGCCTTGATTATACAGGAAACCTTCGACAGCTTGGGAGGGCGACACCT
1 ACGGACTGCCGTTGTCCAGCCTGGAATATACAAGAAACCTTCGACAGCCTGGGAGGGCGACACCT
72452443 CAAGTAAAAGATGGCG-CCA
66 CAAGTAAAAGATGG-GACCA
*
72452462 ATGGACTGC
1 ACGGACTGC
72452471 TGTTTTCGGT
Statistics
Matches: 80, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
84 79 0.99
85 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.30, T:0.18
Consensus pattern (84 bp):
ACGGACTGCCGTTGTCCAGCCTGGAATATACAAGAAACCTTCGACAGCCTGGGAGGGCGACACCT
CAAGTAAAAGATGGGACCA
Found at i:72458394 original size:12 final size:12
Alignment explanation
Indices: 72458377--72458401 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72458367 CTTGAAATGC
72458377 CTTCTCTTCACT
1 CTTCTCTTCACT
72458389 CTTCTCTTCACT
1 CTTCTCTTCACT
72458401 C
1 C
72458402 CTTTCTGCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.44, G:0.00, T:0.48
Consensus pattern (12 bp):
CTTCTCTTCACT
Found at i:72462168 original size:25 final size:26
Alignment explanation
Indices: 72462130--72462180 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
72462120 CATATAAATG
*
72462130 TTTATAATCAATTTTTTTAAAAATAT
1 TTTATAAACAATTTTTTTAAAAATAT
*
72462156 TTTATAAAC-ATTTTTTTAAACATAT
1 TTTATAAACAATTTTTTTAAAAATAT
72462181 AAACTTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (26 bp):
TTTATAAACAATTTTTTTAAAAATAT
Found at i:72464230 original size:20 final size:21
Alignment explanation
Indices: 72464207--72464250 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
72464197 ATATTTTTTA
*
72464207 TAATATTAAT-TACAAATATT
1 TAATAGTAATATACAAATATT
**
72464227 TAATAGTAATATTTAAATATT
1 TAATAGTAATATACAAATATT
72464248 TAA
1 TAA
72464251 AATATAGTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (21 bp):
TAATAGTAATATACAAATATT
Found at i:72464957 original size:95 final size:95
Alignment explanation
Indices: 72464761--72465044 Score: 406
Period size: 95 Copynumber: 3.0 Consensus size: 95
72464751 ATAACGTTTC
* * * * *
72464761 GGTGTTGTTGATTTACTTGTTCTTTATGTTTTTGATTTGATTATTTTTTATTCACCATCTGATCT
1 GGTGTCGTTGATTTACTTGTTCTTTATGTTTTCGATTCGATTGTTTTTTATTCA-TATCTGATCT
* * * *
72464826 GAGTTAAAATTCCCAGATCCGTACGAGATGT
65 GAGTTAAATTTCCCAGATCTGTACAAGACGT
* *
72464857 GGTGTCGTTGATTTACTTGTTCTTCATGTTTTCGATTCGATTGTTTTTTATTCATACCTGATCTG
1 GGTGTCGTTGATTTACTTGTTCTTTATGTTTTCGATTCGATTGTTTTTTATTCATATCTGATCTG
72464922 AGTTAAATTTCCCAGATCTGTACAAGACGT
66 AGTTAAATTTCCCAGATCTGTACAAGACGT
** * *
72464952 GGTGTCGACGATTTACTTGTTCTTTATGTTTTCGATTCAATTGTTTTTGATTCATCATCTGATCT
1 GGTGTCGTTGATTTACTTGTTCTTTATGTTTTCGATTCGATTGTTTTTTATTCAT-ATCTGATCT
*
72465017 GAGTTTAATTTCCCAGATCTGTACAAGA
65 GAGTTAAATTTCCCAGATCTGTACAAGA
72465045 TGATCAACAG
Statistics
Matches: 169, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
95 85 0.50
96 84 0.50
ACGTcount: A:0.21, C:0.15, G:0.18, T:0.46
Consensus pattern (95 bp):
GGTGTCGTTGATTTACTTGTTCTTTATGTTTTCGATTCGATTGTTTTTTATTCATATCTGATCTG
AGTTAAATTTCCCAGATCTGTACAAGACGT
Found at i:72467247 original size:29 final size:29
Alignment explanation
Indices: 72467184--72467247 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
72467174 AATTTATATT
* *
72467184 TTTATAAAAATTGTTATTTTTTTAAAAAA
1 TTTATTAAAATTGTTATTTTCTTAAAAAA
* *
72467213 TATATTAAAATT-TTATTTTCTTAACTAAA
1 TTTATTAAAATTGTTATTTTCTTAA-AAAA
72467242 TTTATT
1 TTTATT
72467248 CGTAAGTAAG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
28 11 0.38
29 18 0.62
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.55
Consensus pattern (29 bp):
TTTATTAAAATTGTTATTTTCTTAAAAAA
Found at i:72467524 original size:27 final size:27
Alignment explanation
Indices: 72467494--72467557 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
72467484 TATGTTTTTA
72467494 TTAAAATTTTAAAAATT-ATGATAATTT
1 TTAAAATTTTAAAAATTCAT-ATAATTT
* * * *
72467521 TTAAATTTTTTAATATTCATATATTTT
1 TTAAAATTTTAAAAATTCATATAATTT
*
72467548 TTACAATTTT
1 TTAAAATTTT
72467558 TAATCATTTA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
27 28 0.93
28 2 0.07
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (27 bp):
TTAAAATTTTAAAAATTCATATAATTT
Found at i:72467612 original size:19 final size:19
Alignment explanation
Indices: 72467574--72467644 Score: 63
Period size: 19 Copynumber: 3.7 Consensus size: 19
72467564 TTTAAAAAAA
* *
72467574 TAATGATTTTCACAAAATTT
1 TAATAATTTTTAC-AAATTT
72467594 TAATAATTTTTACAAATTT
1 TAATAATTTTTACAAATTT
* * *
72467613 AAATAGTTTTCTACAAACTT
1 TAATAATTTT-TACAAATTT
*
72467633 T-ATATTTTTTAC
1 TAATAATTTTTAC
72467645 CAGTTTTTTT
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
18 3 0.07
19 21 0.49
20 19 0.44
ACGTcount: A:0.38, C:0.10, G:0.03, T:0.49
Consensus pattern (19 bp):
TAATAATTTTTACAAATTT
Found at i:72468328 original size:38 final size:36
Alignment explanation
Indices: 72468269--72468360 Score: 96
Period size: 35 Copynumber: 2.5 Consensus size: 36
72468259 GAGGTATTAT
* * *
72468269 AAATTTTAAAAAAAATTAATTTTGAAATTTATAT-A
1 AAATTTAAAAAAAAATTAATTTTAAAATATATATAA
*
72468304 AAATTTAAAAAAAAATCTCAAATTTTAAAATATATGTAA
1 AAATTTAAAAAAAAAT-T--AATTTTAAAATATATATAA
* *
72468343 AAATTGAAAAGAAAATTA
1 AAATTTAAAAAAAAATTA
72468361 CAAAAAGAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
35 15 0.32
36 2 0.04
38 15 0.32
39 15 0.32
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (36 bp):
AAATTTAAAAAAAAATTAATTTTAAAATATATATAA
Found at i:72472281 original size:57 final size:58
Alignment explanation
Indices: 72472191--72472306 Score: 198
Period size: 57 Copynumber: 2.0 Consensus size: 58
72472181 ATTCTAGGAA
*
72472191 ATATATGAAACTTGTAATATGACAGGTGACAAAGGGC-AAAGTGCTCATTTTAATATG
1 ATATATGAAACTTGTAATATGACAGGTGACAAAGGGCAAAAGTGCTCATTGTAATATG
* *
72472248 ATATATGAAACTTGTAATATGACAGGTGGCAAAGGGCAAAAGTGTTCATTGTAATATG
1 ATATATGAAACTTGTAATATGACAGGTGACAAAGGGCAAAAGTGCTCATTGTAATATG
72472306 A
1 A
72472307 CACCGAAACA
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
57 36 0.65
58 19 0.35
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.29
Consensus pattern (58 bp):
ATATATGAAACTTGTAATATGACAGGTGACAAAGGGCAAAAGTGCTCATTGTAATATG
Found at i:72477390 original size:18 final size:18
Alignment explanation
Indices: 72477367--72477403 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
72477357 ACGAATCACG
72477367 ATGAATATTCAGTGATCA
1 ATGAATATTCAGTGATCA
*
72477385 ATGAATGTTCAGTGATCA
1 ATGAATATTCAGTGATCA
72477403 A
1 A
72477404 AATATTTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (18 bp):
ATGAATATTCAGTGATCA
Found at i:72479258 original size:18 final size:19
Alignment explanation
Indices: 72479221--72479259 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
72479211 TGCTTCTTAG
* *
72479221 AAACACTTTTTGGGACAAA
1 AAACACTTTTTGAGAAAAA
72479240 AAACAC-TTTTGAGAAAAA
1 AAACACTTTTTGAGAAAAA
72479258 AA
1 AA
72479260 CCATTGCTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.51, C:0.13, G:0.13, T:0.23
Consensus pattern (19 bp):
AAACACTTTTTGAGAAAAA
Found at i:72479650 original size:79 final size:79
Alignment explanation
Indices: 72479549--72479694 Score: 215
Period size: 79 Copynumber: 1.8 Consensus size: 79
72479539 ATACATACTG
* *
72479549 CATTGAACATCAGCTGGCCTAACTAGCATTTGAGAACATGGATGGTATAAGG-TATCTGATAGAA
1 CATTGAACATCAGCTGGCCTAACTAGCATTTGAGAACATGGAGGGTAT-AGGCTATATGATAGAA
72479613 CACACACATACACTA
65 CACACACATACACTA
* * *
72479628 CATTGAACATCA-CTGGGTCTAACTAGCGTTTGAGAGCATGGAGGGTATAGGCTATATGATAGAA
1 CATTGAACATCAGCT-GGCCTAACTAGCATTTGAGAACATGGAGGGTATAGGCTATATGATAGAA
72479692 CAC
65 CAC
72479695 TTATAAATGT
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
78 5 0.08
79 55 0.92
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (79 bp):
CATTGAACATCAGCTGGCCTAACTAGCATTTGAGAACATGGAGGGTATAGGCTATATGATAGAAC
ACACACATACACTA
Found at i:72480554 original size:25 final size:24
Alignment explanation
Indices: 72480493--72480555 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
72480483 CCCCCAAAAA
*
72480493 AAATAAA-T-AAATAAATGTTTTT
1 AAATAAATTAAAATAAATGTATTT
* *
72480515 CAATAAATTAAAATATATGTATTT
1 AAATAAATTAAAATAAATGTATTT
72480539 AAATAACATTAAAATAA
1 AAATAA-ATTAAAATAA
72480556 GTACAGGCTG
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
22 6 0.18
23 1 0.03
24 17 0.52
25 9 0.27
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37
Consensus pattern (24 bp):
AAATAAATTAAAATAAATGTATTT
Found at i:72480586 original size:13 final size:13
Alignment explanation
Indices: 72480568--72480596 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
72480558 ACAGGCTGAA
72480568 CTAGCAAATGTCT
1 CTAGCAAATGTCT
72480581 CTAGCAAATGTCT
1 CTAGCAAATGTCT
72480594 CTA
1 CTA
72480597 AAGTCTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (13 bp):
CTAGCAAATGTCT
Found at i:72484466 original size:3 final size:3
Alignment explanation
Indices: 72484451--72484482 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
72484441 TACCGAAATA
*
72484451 AAT AAT AAC AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
72484483 AATCCTATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:72484852 original size:24 final size:23
Alignment explanation
Indices: 72484808--72484853 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
72484798 ACATTATGGA
*
72484808 TTAAAATTATTATTATGTTAATT
1 TTAAAATTATTATAATGTTAATT
72484831 TTAAAATTAATTAATAAT-TTAAT
1 TTAAAATT-ATT-ATAATGTTAAT
72484854 CACCAATGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 8 0.40
24 8 0.40
25 4 0.20
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (23 bp):
TTAAAATTATTATAATGTTAATT
Found at i:72499501 original size:14 final size:14
Alignment explanation
Indices: 72499482--72499511 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
72499472 GCTGCCATGG
72499482 TTGTTAGATGAATC
1 TTGTTAGATGAATC
72499496 TTGTTAGATGAATC
1 TTGTTAGATGAATC
72499510 TT
1 TT
72499512 CGATCTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.07, G:0.20, T:0.47
Consensus pattern (14 bp):
TTGTTAGATGAATC
Found at i:72501117 original size:9 final size:9
Alignment explanation
Indices: 72501084--72501120 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
72501074 TATAGTTCGA
*
72501084 TATTCGGAT
1 TATTCGAAT
72501093 TATTCGAAT
1 TATTCGAAT
*
72501102 TATTCGAGT
1 TATTCGAAT
72501111 TATTCGAAT
1 TATTCGAAT
72501120 T
1 T
72501121 CGAAAACTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.27, C:0.11, G:0.16, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:72511550 original size:23 final size:23
Alignment explanation
Indices: 72511524--72511617 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
72511514 AAGTTAGAAG
72511524 AGTGAAGAGACTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* * *
72511547 AGTGAAAAAACTTGAATATGAAT
1 AGTGAAGAGACTTGAATATGAAA
*
72511570 AGTGAAGAGACTTGAAGATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* *
72511593 AGTTAAGAGGCTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
72511616 AG
1 AG
72511618 ATACACACAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.48, C:0.04, G:0.26, T:0.22
Consensus pattern (23 bp):
AGTGAAGAGACTTGAATATGAAA
Found at i:72516049 original size:23 final size:23
Alignment explanation
Indices: 72516021--72516114 Score: 125
Period size: 23 Copynumber: 4.1 Consensus size: 23
72516011 AAGTTAGAAG
72516021 AGTGAAGAGACTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* * * *
72516044 ACTGAAAAAACTTGAATATGAAT
1 AGTGAAGAGACTTGAATATGAAA
*
72516067 AGTGAAGAGACTTGAAGATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* *
72516090 AGTTAAGAGGCTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
72516113 AG
1 AG
72516115 ATACACACAT
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 59 1.00
ACGTcount: A:0.48, C:0.05, G:0.24, T:0.22
Consensus pattern (23 bp):
AGTGAAGAGACTTGAATATGAAA
Found at i:72517217 original size:42 final size:42
Alignment explanation
Indices: 72517158--72517239 Score: 146
Period size: 42 Copynumber: 2.0 Consensus size: 42
72517148 ATGCACAAAA
* *
72517158 AAGTGCCCTTGTTGCCTCGTTCCAGCCATGAAAATGATTTCG
1 AAGTGCCATTGTTGCCTCGTTCCAGCCATGAAAAGGATTTCG
72517200 AAGTGCCATTGTTGCCTCGTTCCAGCCATGAAAAGGATTT
1 AAGTGCCATTGTTGCCTCGTTCCAGCCATGAAAAGGATTT
72517240 TTAACTCACT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.30
Consensus pattern (42 bp):
AAGTGCCATTGTTGCCTCGTTCCAGCCATGAAAAGGATTTCG
Found at i:72519005 original size:11 final size:11
Alignment explanation
Indices: 72518959--72519006 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
72518949 TTTCTGTTGC
72518959 TATTTTGCTGT
1 TATTTTGCTGT
*
72518970 GATTTTGCTGT
1 TATTTTGCTGT
* * *
72518981 TATATTACTAT
1 TATTTTGCTGT
*
72518992 TATTTTGTTGT
1 TATTTTGCTGT
72519003 TATT
1 TATT
72519007 ATTGTGATAT
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.17, C:0.06, G:0.15, T:0.62
Consensus pattern (11 bp):
TATTTTGCTGT
Found at i:72520588 original size:4 final size:4
Alignment explanation
Indices: 72520573--72520602 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
72520563 AGGTATGATT
*
72520573 TACA TGCA TACA TACA TACA TACA TACA TA
1 TACA TACA TACA TACA TACA TACA TACA TA
72520603 TATATATGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.47, C:0.23, G:0.03, T:0.27
Consensus pattern (4 bp):
TACA
Found at i:72521559 original size:32 final size:32
Alignment explanation
Indices: 72521523--72521587 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
72521513 ACAATTTTAT
*
72521523 ACCATGCTTTCTCGTATAATCATATACATGCC
1 ACCATCCTTTCTCGTATAATCATATACATGCC
72521555 ACCATCCTTTCTCGTATAATCATATACATGCC
1 ACCATCCTTTCTCGTATAATCATATACATGCC
72521587 A
1 A
72521588 TTCTCATACT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (32 bp):
ACCATCCTTTCTCGTATAATCATATACATGCC
Found at i:72523846 original size:9 final size:9
Alignment explanation
Indices: 72523834--72523877 Score: 65
Period size: 9 Copynumber: 5.1 Consensus size: 9
72523824 ATTATCAAAT
72523834 TATTAATTG
1 TATTAATTG
72523843 TATTAATTG
1 TATTAATTG
*
72523852 --TTAATTA
1 TATTAATTG
72523859 TATTAATTG
1 TATTAATTG
72523868 TATTAATTG
1 TATTAATTG
72523877 T
1 T
72523878 TGTAACAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
7 6 0.19
9 25 0.81
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:72523855 original size:16 final size:16
Alignment explanation
Indices: 72523831--72523868 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
72523821 AAAATTATCA
* *
72523831 AATTATTAATTGTATT
1 AATTGTTAATTATATT
72523847 AATTGTTAATTATATT
1 AATTGTTAATTATATT
72523863 AATTGT
1 AATTGT
72523869 ATTAATTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (16 bp):
AATTGTTAATTATATT
Found at i:72524146 original size:17 final size:17
Alignment explanation
Indices: 72524115--72524164 Score: 75
Period size: 17 Copynumber: 2.9 Consensus size: 17
72524105 AAACTTAAAA
72524115 TAAAAAACTAT-TATATT
1 TAAAAAA-TATATATATT
*
72524132 TAAAATATATATATATT
1 TAAAAAATATATATATT
72524149 TAAAAAATATATATAT
1 TAAAAAATATATATAT
72524165 AAAATTAGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 3 0.10
17 27 0.90
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (17 bp):
TAAAAAATATATATATT
Found at i:72525721 original size:35 final size:35
Alignment explanation
Indices: 72525680--72525751 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
72525670 CTCGCCCCCT
72525680 AAAATTTCTGGCTTCGAATAATTTATTTACGGCTC
1 AAAATTTCTGGCTTCGAATAATTTATTTACGGCTC
* * *
72525715 AAAATTTCTGGCTTTGTATAATTTATTTATGGCTC
1 AAAATTTCTGGCTTCGAATAATTTATTTACGGCTC
72525750 AA
1 AA
72525752 TTAAATAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (35 bp):
AAAATTTCTGGCTTCGAATAATTTATTTACGGCTC
Found at i:72530223 original size:18 final size:18
Alignment explanation
Indices: 72530204--72530244 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
72530194 ATAATATTTA
72530204 AAAT-TCATAAAAATTGT
1 AAATATCATAAAAATTGT
*
72530221 AAATATCATTAAAATTGTT
1 AAATATCATAAAAATTG-T
72530240 AAATA
1 AAATA
72530245 ATGATTAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 4 0.19
18 11 0.52
19 6 0.29
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.37
Consensus pattern (18 bp):
AAATATCATAAAAATTGT
Found at i:72530302 original size:28 final size:27
Alignment explanation
Indices: 72530262--72530326 Score: 78
Period size: 27 Copynumber: 2.3 Consensus size: 27
72530252 GAAATTGCAA
*
72530262 AAATTATTCAAAAATGATAAG-AATTTTT
1 AAATT-TTTAAAAATGAT-AGTAATTTTT
*
72530290 AAATTTTTAAAAATTATAGTAATTTTT
1 AAATTTTTAAAAATGATAGTAATTTTT
72530317 ACAATTTTTA
1 A-AATTTTTA
72530327 TTAAAATAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 2 0.06
27 18 0.55
28 13 0.39
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (27 bp):
AAATTTTTAAAAATGATAGTAATTTTT
Found at i:72533959 original size:42 final size:42
Alignment explanation
Indices: 72533900--72533984 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
72533890 ATAGAGAAAG
*
72533900 TTAAAATCTCGAGCTTTTGGTGATGTAAGTTGGACTTATTTA
1 TTAAAATCTCGAGCTTTTGGTGATGGAAGTTGGACTTATTTA
72533942 TTAAAATCTCGAGCTTTTGGTGATGGAAGTTGGACTTATTTA
1 TTAAAATCTCGAGCTTTTGGTGATGGAAGTTGGACTTATTTA
72533984 T
1 T
72533985 AATCCCATCT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.26, C:0.09, G:0.22, T:0.42
Consensus pattern (42 bp):
TTAAAATCTCGAGCTTTTGGTGATGGAAGTTGGACTTATTTA
Found at i:72534473 original size:45 final size:46
Alignment explanation
Indices: 72534407--72534496 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 46
72534397 GAGATCCTTC
* **
72534407 ATGCCGAGTGTAGGCAAAGGTGAGGACTCGC-TGATGCCGA-TGCAG
1 ATGCCGAGTGCAGGCAAAGGTGAAAACTC-CTTGATGCCGAGTGCAG
*
72534452 ATGCCGAGTGCAGGCATAGGTGAAAACTCCTTGATGCCGAGTGCA
1 ATGCCGAGTGCAGGCAAAGGTGAAAACTCCTTGATGCCGAGTGCA
72534497 TGTATGAACT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
44 1 0.03
45 34 0.87
46 4 0.10
ACGTcount: A:0.26, C:0.21, G:0.34, T:0.19
Consensus pattern (46 bp):
ATGCCGAGTGCAGGCAAAGGTGAAAACTCCTTGATGCCGAGTGCAG
Found at i:72534883 original size:11 final size:11
Alignment explanation
Indices: 72534867--72534894 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
72534857 TTACAACTTA
72534867 TACCTATATTG
1 TACCTATATTG
72534878 TACCTATATTG
1 TACCTATATTG
72534889 TACCTA
1 TACCTA
72534895 CAATTATAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (11 bp):
TACCTATATTG
Found at i:72535302 original size:22 final size:22
Alignment explanation
Indices: 72535277--72535320 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
72535267 TTAACAATTA
* *
72535277 TTTATTAAATGTTTATTAAAAT
1 TTTAATAAATATTTATTAAAAT
*
72535299 TTTAATATATATTTATTAAAAT
1 TTTAATAAATATTTATTAAAAT
72535321 AATTATAACG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (22 bp):
TTTAATAAATATTTATTAAAAT
Found at i:72541544 original size:84 final size:84
Alignment explanation
Indices: 72541417--72541583 Score: 219
Period size: 84 Copynumber: 2.0 Consensus size: 84
72541407 AAACTAGCGC
* * * *
72541417 GGACGGACTGCTGTTGTCCAGCCTGGAACCTACGGGAAACCTTCGACAGCCTGGGAGGGCGACGC
1 GGACGGACTGCTGTTGTCCAGCATCGAACCTACAGGAAACCTTCGACAGCCTGGGAGGGCGACAC
*
72541482 CTGAAGTAC-AGTATGGCGT
66 CTCAAGTACAAG-ATGGCGT
* * * * * *
72541501 GGACGGACTGCTGTTGTCCAGCATCGAATCTACAGGAAGCCTTCGACGGCTTGGTAGTGCGACAC
1 GGACGGACTGCTGTTGTCCAGCATCGAACCTACAGGAAACCTTCGACAGCCTGGGAGGGCGACAC
72541566 CTCAAGTACAAGATGGCG
66 CTCAAGTACAAGATGGCG
72541584 GCAACGGACT
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
84 69 0.97
85 2 0.03
ACGTcount: A:0.23, C:0.26, G:0.32, T:0.19
Consensus pattern (84 bp):
GGACGGACTGCTGTTGTCCAGCATCGAACCTACAGGAAACCTTCGACAGCCTGGGAGGGCGACAC
CTCAAGTACAAGATGGCGT
Found at i:72542456 original size:6 final size:6
Alignment explanation
Indices: 72542440--72542470 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
72542430 CTAATATAGT
72542440 ATTAT- ATTATA ATTATA ATTATA ATTATA AT
1 ATTATA ATTATA ATTATA ATTATA ATTATA AT
72542471 GCATGTCCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
ATTATA
Found at i:72545544 original size:27 final size:29
Alignment explanation
Indices: 72545508--72545562 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 29
72545498 TAATAATTTT
72545508 AAATTGATAAGAAAATTTA-AATTTTTAA
1 AAATTGATAAGAAAATTTACAATTTTTAA
* **
72545536 AAATT-ATAATAATTTTTACAATTTTTA
1 AAATTGATAAGAAAATTTACAATTTTTA
72545563 TTAAAATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (29 bp):
AAATTGATAAGAAAATTTACAATTTTTAA
Found at i:72546715 original size:87 final size:87
Alignment explanation
Indices: 72546569--72546745 Score: 354
Period size: 87 Copynumber: 2.0 Consensus size: 87
72546559 ATAGTATTTG
72546569 AATTCAGCTTGGCTCGATTACACTAGATAAAACTCAATTGAGATTTGATGTGTAATTATGTATCG
1 AATTCAGCTTGGCTCGATTACACTAGATAAAACTCAATTGAGATTTGATGTGTAATTATGTATCG
72546634 GAAAGACATAAAAGAAGCATGA
66 GAAAGACATAAAAGAAGCATGA
72546656 AATTCAGCTTGGCTCGATTACACTAGATAAAACTCAATTGAGATTTGATGTGTAATTATGTATCG
1 AATTCAGCTTGGCTCGATTACACTAGATAAAACTCAATTGAGATTTGATGTGTAATTATGTATCG
72546721 GAAAGACATAAAAGAAGCATGA
66 GAAAGACATAAAAGAAGCATGA
72546743 AAT
1 AAT
72546746 CTCAAATTCA
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 90 1.00
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (87 bp):
AATTCAGCTTGGCTCGATTACACTAGATAAAACTCAATTGAGATTTGATGTGTAATTATGTATCG
GAAAGACATAAAAGAAGCATGA
Found at i:72548902 original size:33 final size:33
Alignment explanation
Indices: 72548860--72548948 Score: 169
Period size: 33 Copynumber: 2.7 Consensus size: 33
72548850 GATGTCGAGA
72548860 TCCTTGATGCCGAGTGCAGGCATGGGTGTGAAC
1 TCCTTGATGCCGAGTGCAGGCATGGGTGTGAAC
72548893 TCCTTGATGCCGAGTGCAGGCATGGGTGTGAAC
1 TCCTTGATGCCGAGTGCAGGCATGGGTGTGAAC
*
72548926 TCCTTGATGCTGAGTGCAGGCAT
1 TCCTTGATGCCGAGTGCAGGCAT
72548949 AAACTCTCAA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.18, C:0.21, G:0.35, T:0.26
Consensus pattern (33 bp):
TCCTTGATGCCGAGTGCAGGCATGGGTGTGAAC
Found at i:72549379 original size:33 final size:33
Alignment explanation
Indices: 72549291--72549418 Score: 184
Period size: 33 Copynumber: 3.7 Consensus size: 33
72549281 GATGTCGAGA
*
72549291 TCCTTGATGCCGAGTGCAGGCATGGGTGTGAAC
1 TCCTTGATGCCGAGTGCAGGCATAGGTGTGAAC
72549324 TCCTTGATACCGGTGCCGAGTGCAGGCATAGGTGTGAAC
1 TCCTTG--A----TGCCGAGTGCAGGCATAGGTGTGAAC
72549363 TCCTTGATGCCGAGTGCAGGCATAGGTGTGAAC
1 TCCTTGATGCCGAGTGCAGGCATAGGTGTGAAC
*
72549396 TCCTTGATGCTGAGTGCAGGCAT
1 TCCTTGATGCCGAGTGCAGGCAT
72549419 GAACTCTCAA
Statistics
Matches: 87, Mismatches: 2, Indels: 12
0.86 0.02 0.12
Matches are distributed among these distances:
33 54 0.62
35 1 0.01
37 1 0.01
39 31 0.36
ACGTcount: A:0.20, C:0.22, G:0.34, T:0.25
Consensus pattern (33 bp):
TCCTTGATGCCGAGTGCAGGCATAGGTGTGAAC
Found at i:72551854 original size:20 final size:20
Alignment explanation
Indices: 72551831--72551892 Score: 62
Period size: 17 Copynumber: 3.3 Consensus size: 20
72551821 TTAAAGTTCA
72551831 GGGTTTATGTTTAAGGTCTG
1 GGGTTTATGTTTAAGGTCTG
* *
72551851 GGG-TT-TG-TAAAGTTCAT-
1 GGGTTTATGTTTAAGGTC-TG
72551868 -GGTTTATGTTTAAGGTCTG
1 GGGTTTATGTTTAAGGTCTG
72551887 GGGTTT
1 GGGTTT
72551893 GTAAAGTTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 12
0.67 0.08 0.25
Matches are distributed among these distances:
16 2 0.06
17 8 0.25
18 6 0.19
19 8 0.25
20 8 0.25
ACGTcount: A:0.16, C:0.05, G:0.34, T:0.45
Consensus pattern (20 bp):
GGGTTTATGTTTAAGGTCTG
Found at i:72551872 original size:36 final size:36
Alignment explanation
Indices: 72551822--72551914 Score: 177
Period size: 36 Copynumber: 2.6 Consensus size: 36
72551812 GTTCGAGATT
*
72551822 TAAAGTTCAGGGTTTATGTTTAAGGTCTGGGGTTTG
1 TAAAGTTCATGGTTTATGTTTAAGGTCTGGGGTTTG
72551858 TAAAGTTCATGGTTTATGTTTAAGGTCTGGGGTTTG
1 TAAAGTTCATGGTTTATGTTTAAGGTCTGGGGTTTG
72551894 TAAAGTTCATGGTTTATGTTT
1 TAAAGTTCATGGTTTATGTTT
72551915 TGGGGTTTGA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 56 1.00
ACGTcount: A:0.20, C:0.05, G:0.29, T:0.45
Consensus pattern (36 bp):
TAAAGTTCATGGTTTATGTTTAAGGTCTGGGGTTTG
Done.