Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 24 of 240
Found at i:8618529 original size:16 final size:16
Alignment explanation
Indices: 8618491--8618530 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
8618481 AATATGTGAA
8618491 TAATATTATTTAAAAT
1 TAATATTATTTAAAAT
*
8618507 TATTATT-TTTAAAATT
1 TAATATTATTTAAAA-T
8618523 TAATATTA
1 TAATATTA
8618531 AAATAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TAATATTATTTAAAAT
Found at i:8618539 original size:18 final size:19
Alignment explanation
Indices: 8618516--8618551 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8618506 TTATTATTTT
8618516 TAAAATTT-AATATTAAAA
1 TAAAATTTAAATATTAAAA
8618534 TAAAATTTAAATATTAAA
1 TAAAATTTAAATATTAAA
8618552 TATTTTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
TAAAATTTAAATATTAAAA
Found at i:8618562 original size:19 final size:19
Alignment explanation
Indices: 8618540--8618613 Score: 53
Period size: 19 Copynumber: 3.8 Consensus size: 19
8618530 AAAATAAAAT
8618540 TTAAATATTAAATATTTTA
1 TTAAATATTAAATATTTTA
* * *
8618559 TTAAA-AATAATAAATTATA
1 TTAAATATTAA-ATATTTTA
*
8618578 TTAATTATATT-AATAATTTA
1 TTAA--ATATTAAATATTTTA
*
8618598 TTATATGATTAAATAT
1 TTAAAT-ATTAAATAT
8618614 AAATAATTAA
Statistics
Matches: 40, Mismatches: 9, Indels: 11
0.67 0.15 0.18
Matches are distributed among these distances:
18 6 0.15
19 18 0.45
20 12 0.30
21 2 0.05
22 2 0.05
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (19 bp):
TTAAATATTAAATATTTTA
Found at i:8625422 original size:7 final size:7
Alignment explanation
Indices: 8625407--8625436 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
8625397 TAATATATAT
*
8625407 ATCATAG
1 ATCAAAG
8625414 ATCAAAG
1 ATCAAAG
8625421 ATCAAAG
1 ATCAAAG
8625428 ATCAAAG
1 ATCAAAG
8625435 AT
1 AT
8625437 GTGCGTTGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.53, C:0.13, G:0.13, T:0.20
Consensus pattern (7 bp):
ATCAAAG
Found at i:8631997 original size:4 final size:4
Alignment explanation
Indices: 8631988--8632022 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
8631978 ATTCTTACTT
*
8631988 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TATA TAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAA
8632023 TCAGGCTGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (4 bp):
TAAA
Found at i:8638909 original size:16 final size:17
Alignment explanation
Indices: 8638888--8638920 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8638878 AAAAAAGTCC
*
8638888 TCAATT-AGGGGCAAAT
1 TCAATTAAGGGGAAAAT
8638904 TCAATTAAGGGGAAAAT
1 TCAATTAAGGGGAAAAT
8638921 AATAGAAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.42, C:0.09, G:0.24, T:0.24
Consensus pattern (17 bp):
TCAATTAAGGGGAAAAT
Found at i:8651703 original size:21 final size:21
Alignment explanation
Indices: 8651677--8651729 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
8651667 TAGCGGTGGT
*
8651677 GGTGAGATTAGTTACTGTAGC
1 GGTGAGATTAGGTACTGTAGC
* *
8651698 GGTGAGATTGGGTATTGTAGC
1 GGTGAGATTAGGTACTGTAGC
*
8651719 AGTGAGATTAG
1 GGTGAGATTAG
8651730 AAACAGCAGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.25, C:0.06, G:0.38, T:0.32
Consensus pattern (21 bp):
GGTGAGATTAGGTACTGTAGC
Found at i:8651865 original size:19 final size:18
Alignment explanation
Indices: 8651841--8651896 Score: 55
Period size: 18 Copynumber: 3.1 Consensus size: 18
8651831 TAGAAATTTT
8651841 TAAAATTATTTAACAATTA
1 TAAAATTA-TTAACAATTA
*
8651860 TAAAATTAATAA-ATGATTA
1 TAAAATTATTAACA--ATTA
8651879 -AAAATTATT-ACAATTA
1 TAAAATTATTAACAATTA
8651895 TA
1 TA
8651897 TTTATTTTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
16 4 0.13
17 3 0.10
18 12 0.39
19 12 0.39
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (18 bp):
TAAAATTATTAACAATTA
Found at i:8659240 original size:15 final size:15
Alignment explanation
Indices: 8659220--8659250 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8659210 CCAACCTTCA
*
8659220 AATTTTAGGTCAATT
1 AATTTTACGTCAATT
8659235 AATTTTACGTCAATT
1 AATTTTACGTCAATT
8659250 A
1 A
8659251 TACATAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45
Consensus pattern (15 bp):
AATTTTACGTCAATT
Found at i:8661236 original size:11 final size:11
Alignment explanation
Indices: 8661222--8661247 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
8661212 ATTTTTTAAA
8661222 TTTTAAAATAC
1 TTTTAAAATAC
8661233 TTTTAAAATAC
1 TTTTAAAATAC
8661244 TTTT
1 TTTT
8661248 TTTAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:8661276 original size:11 final size:11
Alignment explanation
Indices: 8661262--8661301 Score: 71
Period size: 11 Copynumber: 3.5 Consensus size: 11
8661252 ATTTTTTTTA
8661262 ATTTTAAAAAT
1 ATTTTAAAAAT
8661273 ATTTTAAAAAT
1 ATTTTAAAAAT
8661284 ATTTTAAAAAT
1 ATTTTAAAAAT
8661295 ACTTTTA
1 A-TTTTA
8661302 TTTTTTTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
11 23 0.82
12 5 0.18
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (11 bp):
ATTTTAAAAAT
Found at i:8661354 original size:38 final size:37
Alignment explanation
Indices: 8661273--8661373 Score: 104
Period size: 34 Copynumber: 2.8 Consensus size: 37
8661263 TTTTAAAAAT
* *
8661273 ATTTTAAAAATATTTTAAAAAT-ACTTTTATTTTTTTTA
1 ATTTT-AAAATATTTTTAAAATAAATTTT-TTTTTTTTA
*
8661311 ATTTTAAAATATTTTTAAAATAAATTTTTTTTATTTTT
1 ATTTTAAAATATTTTTAAAATAAATTTTTTTT-TTTTA
*
8661349 GTTTT---A-ATTTTTAAAATAAATTTTT
1 ATTTTAAAATATTTTTAAAATAAATTTTT
8661374 GGTATTTATT
Statistics
Matches: 57, Mismatches: 4, Indels: 8
0.83 0.06 0.12
Matches are distributed among these distances:
34 19 0.33
35 1 0.02
37 19 0.33
38 18 0.32
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.60
Consensus pattern (37 bp):
ATTTTAAAATATTTTTAAAATAAATTTTTTTTTTTTA
Found at i:8662050 original size:11 final size:11
Alignment explanation
Indices: 8662034--8662060 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
8662024 TAGAAATTAG
8662034 TTTGTGAAACT
1 TTTGTGAAACT
8662045 TTTGTGAAACT
1 TTTGTGAAACT
8662056 TTTGT
1 TTTGT
8662061 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:8663581 original size:91 final size:91
Alignment explanation
Indices: 8663453--8663660 Score: 283
Period size: 91 Copynumber: 2.3 Consensus size: 91
8663443 TTGATTTTAG
* * *
8663453 TAAATTCATATAATACCATTTTATTATTAAGAATTTTATGAAATTATATATCACTATTAAATTAT
1 TAAATTCATATAATA-AAATTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
* *
8663518 ATTTAAT-ATCAATTATTTTAAATTGTA
65 ATGTAATAAT-AATTATTTTAAATTATA
* * *
8663545 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAATAAAATTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTATA
*
8663610 TGTAATAATTATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* * *
8663636 CAAATTCATAAAATATAATTTATTA
1 TAAATTCATATAATAAAATTTATTA
8663661 GTTATAATTA
Statistics
Matches: 102, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
91 86 0.84
92 16 0.16
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAATAAAATTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:8663831 original size:16 final size:16
Alignment explanation
Indices: 8663810--8663851 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
8663800 TTATTAAATT
*
8663810 ATATATTTTAATTATA
1 ATATATTTTAATAATA
8663826 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
8663841 AT-TATGTTTAA
1 ATATAT-TTTAA
8663852 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:8663836 original size:15 final size:15
Alignment explanation
Indices: 8663801--8663842 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
8663791 TTAAGAATTT
*
8663801 TATTAAATTAT-ATA
1 TATTTAATTATAATA
8663815 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
8663829 TATTTAATAATAAT
1 TATTTAATTATAAT
8663843 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:8663945 original size:147 final size:147
Alignment explanation
Indices: 8663785--8664057 Score: 503
Period size: 147 Copynumber: 1.9 Consensus size: 147
8663775 ATAAGAATAT
* * *
8663785 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATAAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTA
8663850 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAA-AATAATTT
66 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTT-AATAACAATAATTT
8663914 ACCAAAACAAATTTCTGC
130 ACCAAAACAAATTTCTGC
8663932 TAATTATAAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTA
1 TAATTATAAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTA
8663997 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAATAACAATAA
8664058 CAATAATCAT
Statistics
Matches: 122, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
146 5 0.04
147 117 0.96
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TAATTATAAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTA
AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAATAACAATAATTTA
CCAAAACAAATTTCTGC
Found at i:8663972 original size:18 final size:17
Alignment explanation
Indices: 8663944--8663978 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8663934 ATTATAAAGA
*
8663944 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8663961 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8663979 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8664221 original size:45 final size:44
Alignment explanation
Indices: 8664122--8664231 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 44
8664112 TTTTCCATTA
8664122 TGCTATTACACCTCTATT--A-T--ATTCAACCAAACACAGGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAGGAT
* * ***
8664161 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAGGA-T
8664206 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
8664232 CCTCTATTCC
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 16 0.28
41 1 0.02
42 1 0.02
44 15 0.26
45 25 0.43
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAGGAT
Found at i:8664231 original size:16 final size:16
Alignment explanation
Indices: 8664210--8664263 Score: 90
Period size: 16 Copynumber: 3.4 Consensus size: 16
8664200 TTGATTTGCT
8664210 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
8664226 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
8664242 ATTACACCTCTAATCC
1 ATTACACCTCTATTCC
*
8664258 AATACA
1 ATTACA
8664264 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.31, C:0.35, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:8668639 original size:7 final size:7
Alignment explanation
Indices: 8668627--8668680 Score: 58
Period size: 7 Copynumber: 7.9 Consensus size: 7
8668617 TTCACTTTAA
8668627 AAAAAAG
1 AAAAAAG
8668634 AAAAAAG
1 AAAAAAG
*
8668641 AATAAAG
1 AAAAAAG
**
8668648 AAAAATC
1 AAAAAAG
8668655 AAAAAA-
1 AAAAAAG
8668661 AAGAAAAG
1 AA-AAAAG
8668669 -AAAAAG
1 AAAAAAG
8668675 AAAAAA
1 AAAAAA
8668681 AAAGGAGGGG
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
6 7 0.18
7 32 0.82
ACGTcount: A:0.83, C:0.02, G:0.11, T:0.04
Consensus pattern (7 bp):
AAAAAAG
Found at i:8668658 original size:21 final size:21
Alignment explanation
Indices: 8668634--8668684 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 21
8668624 TAAAAAAAAG
8668634 AAAAAAGAATAAAGAAAAATCAA
1 AAAAAAG-A-AAAGAAAAATCAA
**
8668657 AAAAAAGAAAAGAAAAAGAAA
1 AAAAAAGAAAAGAAAAATCAA
8668678 AAAAAAG
1 AAAAAAG
8668685 GAGGGGCCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 18 0.69
22 1 0.04
23 7 0.27
ACGTcount: A:0.82, C:0.02, G:0.12, T:0.04
Consensus pattern (21 bp):
AAAAAAGAAAAGAAAAATCAA
Found at i:8668678 original size:20 final size:19
Alignment explanation
Indices: 8668628--8668683 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
8668618 TCACTTTAAA
*
8668628 AAAAAGAAAAAAGAATAAAG
1 AAAAAGAAAAAA-AAAAAAG
*
8668648 AAAAATCAAAAAAAAGAAAAG
1 AAAAA-GAAAAAAAA-AAAAG
8668669 AAAAAGAAAAAAAAA
1 AAAAAGAAAAAAAAA
8668684 GGAGGGGCCA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 1 0.03
20 15 0.48
21 15 0.48
ACGTcount: A:0.84, C:0.02, G:0.11, T:0.04
Consensus pattern (19 bp):
AAAAAGAAAAAAAAAAAAG
Found at i:8668682 original size:30 final size:30
Alignment explanation
Indices: 8668625--8668683 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
8668615 ACTTCACTTT
* *
8668625 AAAAAAAAGAAAAAAGAATAAAGAAAAATC
1 AAAAAAAAGAAAAAAAAAGAAAGAAAAATC
*
8668655 AAAAAAAAGAAAAGAAAAAGAAAAAAAAA
1 AAAAAAAAGAAAA-AAAAAGAAAGAAAAA
8668684 GGAGGGGCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 13 0.52
31 12 0.48
ACGTcount: A:0.85, C:0.02, G:0.10, T:0.03
Consensus pattern (30 bp):
AAAAAAAAGAAAAAAAAAGAAAGAAAAATC
Found at i:8669793 original size:44 final size:44
Alignment explanation
Indices: 8669709--8669793 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
8669699 CAAATTATGG
** * **
8669709 CAAATCTTATCTCCTTGAAATTGTAGTGCAGCAGTTTGAAGCCA
1 CAAATCTTATCTCCTTGAAATTACAGCGCAGCAGACTGAAGCCA
* *
8669753 CAAATCTTATCTCCTTGAAGTTACAGCGGAGCAGACTGAAG
1 CAAATCTTATCTCCTTGAAATTACAGCGCAGCAGACTGAAG
8669794 ACAGTGAATC
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 34 1.00
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (44 bp):
CAAATCTTATCTCCTTGAAATTACAGCGCAGCAGACTGAAGCCA
Found at i:8669826 original size:143 final size:143
Alignment explanation
Indices: 8669559--8670598 Score: 1164
Period size: 143 Copynumber: 7.3 Consensus size: 143
8669549 GATTGAAGTC
* * * * * * *
8669559 ATTATGGCGGATCTTATATTCCTGAAGTTGTAGAGGAACAAATTGAAGCCACCAGCCTTATCTCT
1 ATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCC
* * * ** *
8669624 CTGAAGTTGCAGCAGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGGCGTTATAGTGGAACAG
66 CTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAATAG
8669689 ATTAAAGCTACAA
131 ATTAAAGCTACAA
* * * * * * **
8669702 ATTATGGCAAATCTTATC-TCCTTGAAATTGTAGTGCAGCAGTTTGAAGCCACAAATCTTATCTC
1 ATTATGGCAGATCTTATCTTCC-TGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTC
* * * *
8669766 CTTGAAGTTACAGCGGAGCAGACTGAAGACAGTGAATCTTATTTCCCTAGCATTGCAGTGGAATA
65 CCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAATA
*
8669831 GATTAAAACTACAA
130 GATTAAAGCTACAA
* * *
8669845 ATTATGGCTGATATTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACTAGCCTTATCTCC
1 ATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCC
* * * * * * * *
8669910 CTGAAGTTGCAACGGAGTAGACTGAAGATAGTGAATCTTATTTCCCTGGTGTTGCAGTAGAACAG
66 CTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAATAG
8669975 ATTAAAG-TAACAA
131 ATTAAAGCT-ACAA
* * ** * *
8669988 ATTATGG-AGGATCTTATCTTCCTGAAGTTGCAGTTGAGTAGATTGAAGCCATTAGTCATATCTC
1 ATTATGGCA-GATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTC
* * * *
8670052 CCTGAAGTTACAGCGGAGTAGACTGAATACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAATA
65 CCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAATA
* *
8670117 GATTAAAACAACAA
130 GATTAAAGCTACAA
** * * * * *
8670131 ATTATAACAGATCTTATCTTCCTAAAGTTGTAGTAGAGCAAATTAAAGCCACCAGCCTTATCTCC
1 ATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCC
* * * * * * *
8670196 CTAAAATTGCGGCGGACCAAACTGAAGACAGCGAATCTTATTTCCCT-GCGTTGCAGTAGAACAG
66 CTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAATAG
8670260 ATTAAAGCTACAA
131 ATTAAAGCTACAA
* * * * *
8670273 ATTATAGCGGATCTTATCTTCCTGAAGTTTCAGTGGAACAGATTAAAGCCACCAGCCTTATCTCC
1 ATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCC
* * *
8670338 CTGAAGTTGAAGCGGAGCTGACTAAAGACAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAATAG
66 CTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAATAG
8670403 ATTAAAGCTACAA
131 ATTAAAGCTACAA
* * * * *
8670416 ATTATGGCGGATCTTATC-TCTTTGAAGTTGCAGTGGAGCAGTTTGAAGCCACAAGTCTTATCTC
1 ATTATGGCAGATCTTATCTTC-CTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTC
* ** * * ** *
8670480 CTTGAAGTTGCAGTC-GAGCAGACTGAAGGTAACAAATCTTATTTCCCTAAAGTTACAGTGGAAT
65 CCTGAAGTTGCAG-CGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAAT
* *
8670544 AGATTGAAGCTATAA
129 AGATTAAAGCTACAA
* *
8670559 ATTA---CAGATCTTATC-TCTCTGAAGTTACAGTAGAGCAGAT
1 ATTATGGCAGATCTTATCTTC-CTGAAGTTGCAGTGGAGCAGAT
8670599 CATATCAAAT
Statistics
Matches: 758, Mismatches: 130, Indels: 21
0.83 0.14 0.02
Matches are distributed among these distances:
140 31 0.04
142 128 0.17
143 594 0.78
144 5 0.01
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.29
Consensus pattern (143 bp):
ATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCC
CTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAATAG
ATTAAAGCTACAA
Found at i:8670490 original size:44 final size:44
Alignment explanation
Indices: 8670427--8670832 Score: 218
Period size: 44 Copynumber: 9.0 Consensus size: 44
8670417 TTATGGCGGA
* * *
8670427 TCTTATCTCTTTGAAGTTGCAGTGGAGCAGTTTGAAGCCACAAG
1 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCAACAAG
* * * *
8670471 TCTTATCTCCTTGAAGTTGCAGTCGAGCAGACTGAAGGTAACAAA
1 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAA-GCAACAAG
* * * * ** *
8670516 TCTTATTTCCCTAAAGTTACAGTGGAATAGATTGAAGCTATAAATTACAG
1 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGC----AA-CA-AG
* * * *
8670566 ATCTTATCT-CTCTGAAGTTACAGTAGAGCAGA-TCATATC-A-AA-
1 -TCTTATCTCCT-TGAAGTTGCAGTGGAGCAGATTGA-AGCAACAAG
* * * * *
8670608 TCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGATAAGCTACAAA
1 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGATT---G--AAGCAACAAG
* * * * *
8670657 TCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCACAAAA
1 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCAAC-AAG
* * * *
8670702 T-TTATCT-CTCTGAAGTTGCAGTAGAGAAGGTTGAAGCTACAAG
1 TCTTATCTCCT-TGAAGTTGCAGTGGAGCAGATTGAAGCAACAAG
* * * *
8670745 -CTTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAGCTACGAA-
1 TC-TTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCAAC-AAG
* * * *
8670789 TCATATCTCCTTGAAGTTGCATTAGAGCAGATTTAAGCAACAAG
1 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCAACAAG
8670833 ACGCAGTGGA
Statistics
Matches: 276, Mismatches: 58, Indels: 56
0.71 0.15 0.14
Matches are distributed among these distances:
41 24 0.09
42 2 0.01
43 6 0.02
44 134 0.49
45 41 0.15
46 3 0.01
47 2 0.01
48 4 0.01
49 31 0.11
50 4 0.01
51 25 0.09
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (44 bp):
TCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCAACAAG
Found at i:8670632 original size:92 final size:90
Alignment explanation
Indices: 8670466--8670688 Score: 266
Period size: 92 Copynumber: 2.4 Consensus size: 90
8670456 GTTTGAAGCC
* * * * * * *
8670466 ACAAGTCTTATCTCCTTGAAGTTGCAGTCGAGCAGACTGAAGGTAACAAATCTTATTTCCCTAAA
1 ACAAATCTTATCTCCCTGAAGTTACAGTAGAGCAGA-T-CA--TATCAAATCTTATCTCCCTAAA
* *
8670531 GTTACAGTGGAATAGATTGAAGCTATAAATT
62 GTTACAGTGGAACAGATTGAAG--ATAAACT
* * *
8670562 ACAGATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCATATCAAATCTTATCTCCCTAAAGTTG
1 ACAAATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCATATCAAATCTTATCTCCCTAAAGTTA
*
8670627 CAGTGGAACAGATTGAAGATAAGCT
66 CAGTGGAACAGATTGAAGATAAACT
*
8670652 ACAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGAT
1 ACAAATCTTATCTCCCTGAAGTTACAGTAGAGCAGAT
8670689 TAAAGCCACA
Statistics
Matches: 111, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
90 39 0.35
92 40 0.36
94 1 0.01
95 1 0.01
96 30 0.27
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.29
Consensus pattern (90 bp):
ACAAATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCATATCAAATCTTATCTCCCTAAAGTTA
CAGTGGAACAGATTGAAGATAAACT
Found at i:8671019 original size:14 final size:15
Alignment explanation
Indices: 8670997--8671030 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
8670987 TCTCCGGGCC
8670997 TAAAACCAAAA-AAA
1 TAAAACCAAAACAAA
*
8671011 TAAAGCCAAAACAAA
1 TAAAACCAAAACAAA
8671026 TAAAA
1 TAAAA
8671031 AAGTCCAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.74, C:0.15, G:0.03, T:0.09
Consensus pattern (15 bp):
TAAAACCAAAACAAA
Found at i:8672406 original size:25 final size:25
Alignment explanation
Indices: 8672349--8672399 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
8672339 TTATAATTGG
*
8672349 TTTGTTTTATTTTTATTTCTTTCAT
1 TTTGTTTTATTTTTATTTATTTCAT
8672374 TTTGTTTTATTTTTATTTATTTCAT
1 TTTGTTTTATTTTTATTTATTTCAT
8672399 T
1 T
8672400 ATTTTTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.14, C:0.06, G:0.04, T:0.76
Consensus pattern (25 bp):
TTTGTTTTATTTTTATTTATTTCAT
Found at i:8675445 original size:42 final size:42
Alignment explanation
Indices: 8675396--8675545 Score: 167
Period size: 42 Copynumber: 3.6 Consensus size: 42
8675386 AGGCTAAATA
* *
8675396 GAAGCTCATGAGAATTAAACAGAAACCCATAAGGGTTGAACG
1 GAAGCTCATAAGAGTTAAACAGAAACCCATAAGGGTTGAACG
* * * * *
8675438 GAAGCTCATAAGAGCTGAAC-GAAAACTCATAAGGGTTAAACA
1 GAAGCTCATAAGAGTTAAACAG-AAACCCATAAGGGTTGAACG
* * * *
8675480 GAAGCTCAAAAGAGTTGAACGGAAACCCATTAGGGTTGAACG
1 GAAGCTCATAAGAGTTAAACAGAAACCCATAAGGGTTGAACG
* *
8675522 GAAACTCATATGAGTTAAACAGAA
1 GAAGCTCATAAGAGTTAAACAGAA
8675546 GCTTATAAGA
Statistics
Matches: 88, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
41 1 0.01
42 86 0.98
43 1 0.01
ACGTcount: A:0.43, C:0.16, G:0.23, T:0.17
Consensus pattern (42 bp):
GAAGCTCATAAGAGTTAAACAGAAACCCATAAGGGTTGAACG
Found at i:8675449 original size:21 final size:21
Alignment explanation
Indices: 8675417--8675567 Score: 122
Period size: 21 Copynumber: 7.2 Consensus size: 21
8675407 GAATTAAACA
* *
8675417 GAAACCCATAAGGGTTGAACG
1 GAAACTCATAAGAGTTGAACG
* *
8675438 GAAGCTCATAAGAGCTGAACG
1 GAAACTCATAAGAGTTGAACG
* * * *
8675459 AAAACTCATAAGGGTTAAACA
1 GAAACTCATAAGAGTTGAACG
* *
8675480 GAAGCTCAAAAGAGTTGAACG
1 GAAACTCATAAGAGTTGAACG
* * *
8675501 GAAACCCATTAGGGTTGAACG
1 GAAACTCATAAGAGTTGAACG
* * *
8675522 GAAACTCATATGAGTTAAACA
1 GAAACTCATAAGAGTTGAACG
* * * *
8675543 GAAGCTTATAAGAGCTAAACG
1 GAAACTCATAAGAGTTGAACG
8675564 GAAA
1 GAAA
8675568 GTAAACACGA
Statistics
Matches: 97, Mismatches: 33, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 97 1.00
ACGTcount: A:0.43, C:0.16, G:0.24, T:0.17
Consensus pattern (21 bp):
GAAACTCATAAGAGTTGAACG
Found at i:8675499 original size:63 final size:63
Alignment explanation
Indices: 8675400--8675567 Score: 183
Period size: 63 Copynumber: 2.7 Consensus size: 63
8675390 TAAATAGAAG
* * * * * * *
8675400 CTCATGAGAATTAAACAGAAACCCATAAGGGTTGAACGGAAGCTCATAAGAGCTGAACGAAAA
1 CTCATAAGAGTTAAACAGAAGCTCATAAGAGTTGAACGGAAACCCATAAGAGCTGAACGAAAA
* * * * * *
8675463 CTCATAAGGGTTAAACAGAAGCTCAAAAGAGTTGAACGGAAACCCATTAGGGTTGAACGGAAA
1 CTCATAAGAGTTAAACAGAAGCTCATAAGAGTTGAACGGAAACCCATAAGAGCTGAACGAAAA
* * * *
8675526 CTCATATGAGTTAAACAGAAGCTTATAAGAGCTAAACGGAAA
1 CTCATAAGAGTTAAACAGAAGCTCATAAGAGTTGAACGGAAA
8675568 GTAAACACGA
Statistics
Matches: 86, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
63 86 1.00
ACGTcount: A:0.43, C:0.16, G:0.23, T:0.18
Consensus pattern (63 bp):
CTCATAAGAGTTAAACAGAAGCTCATAAGAGTTGAACGGAAACCCATAAGAGCTGAACGAAAA
Found at i:8676838 original size:42 final size:42
Alignment explanation
Indices: 8676775--8676873 Score: 137
Period size: 42 Copynumber: 2.4 Consensus size: 42
8676765 TCGATATTTA
* * *
8676775 GCACTAAGTGTGCGAAGTTAAAATAATGATGTTGGATAATAG
1 GCACTAAGTGTGCGAAATTAAAATAATGATGTTGAATAACAG
* *
8676817 GCACTAAGTGTGTC-AAATTAAAATGATGATGTTGAATAACGG
1 GCACTAAGTGTG-CGAAATTAAAATAATGATGTTGAATAACAG
8676859 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
8676874 TACTAAGAGC
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
41 1 0.02
42 48 0.96
43 1 0.02
ACGTcount: A:0.36, C:0.10, G:0.26, T:0.27
Consensus pattern (42 bp):
GCACTAAGTGTGCGAAATTAAAATAATGATGTTGAATAACAG
Found at i:8689761 original size:13 final size:13
Alignment explanation
Indices: 8689743--8689767 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8689733 ATTTTTAATG
8689743 TTACCTTATTTTT
1 TTACCTTATTTTT
8689756 TTACCTTATTTT
1 TTACCTTATTTT
8689768 GAATACTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (13 bp):
TTACCTTATTTTT
Found at i:8697548 original size:20 final size:20
Alignment explanation
Indices: 8697523--8697562 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
8697513 GGACAAGCAC
*
8697523 CATTAGGAATGTGATGTCGT
1 CATTAGGAATCTGATGTCGT
8697543 CATTAGGAATCTGATGTCGT
1 CATTAGGAATCTGATGTCGT
8697563 TTGTCACCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.25, C:0.12, G:0.28, T:0.35
Consensus pattern (20 bp):
CATTAGGAATCTGATGTCGT
Found at i:8698099 original size:20 final size:20
Alignment explanation
Indices: 8698071--8698114 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
8698061 ATTTTAACTT
* * *
8698071 AAATTTTAACATTATCCTTG
1 AAATATTAACATTAACCTTA
*
8698091 AAATATTAACCTTAACCTTA
1 AAATATTAACATTAACCTTA
8698111 AAAT
1 AAAT
8698115 TTTTTATTTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.43, C:0.16, G:0.02, T:0.39
Consensus pattern (20 bp):
AAATATTAACATTAACCTTA
Found at i:8712945 original size:21 final size:20
Alignment explanation
Indices: 8712883--8712946 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 20
8712873 TAGGGGTTTG
* *
8712883 AGTTTTCTTCTATATTTTTTA
1 AGTTTT-TTTTATATTTTTTT
*
8712904 AG-TTTTTTTATATATTCTTT
1 AGTTTTTTTTATAT-TTTTTT
8712924 AGTTTTTTTTATAATTTTTTT
1 AGTTTTTTTTAT-ATTTTTTT
8712945 AG
1 AG
8712947 ATGTAAATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
19 7 0.19
20 9 0.25
21 18 0.50
22 2 0.06
ACGTcount: A:0.20, C:0.05, G:0.06, T:0.69
Consensus pattern (20 bp):
AGTTTTTTTTATATTTTTTT
Found at i:8713717 original size:26 final size:29
Alignment explanation
Indices: 8713674--8713728 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 29
8713664 CATAAAACCC
8713674 AATTACAACCCAAACCC-AAGACCCAACA
1 AATTACAACCCAAACCCAAAGACCCAACA
* *
8713702 AATTA-AA-CCAAGCCCAAATACCCAACA
1 AATTACAACCCAAACCCAAAGACCCAACA
8713729 GGCCCAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 7 0.29
27 12 0.50
28 5 0.21
ACGTcount: A:0.51, C:0.36, G:0.04, T:0.09
Consensus pattern (29 bp):
AATTACAACCCAAACCCAAAGACCCAACA
Found at i:8714827 original size:3 final size:3
Alignment explanation
Indices: 8714819--8714860 Score: 66
Period size: 3 Copynumber: 13.7 Consensus size: 3
8714809 AATAATTTGA
*
8714819 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CAT TATT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TA
8714861 GTTTTATTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 33 0.92
4 3 0.08
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:8721459 original size:16 final size:16
Alignment explanation
Indices: 8721438--8721485 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
8721428 TCCATGTCAG
8721438 GATTTGTGTTTTAATT
1 GATTTGTGTTTTAATT
* *
8721454 GATTTGGAGTTTGAATT
1 GATTT-GTGTTTTAATT
*
8721471 AATTTGTGTTTTAAT
1 GATTTGTGTTTTAAT
8721486 GTTATAGGTT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
16 13 0.50
17 13 0.50
ACGTcount: A:0.23, C:0.00, G:0.21, T:0.56
Consensus pattern (16 bp):
GATTTGTGTTTTAATT
Found at i:8725610 original size:43 final size:43
Alignment explanation
Indices: 8725549--8725633 Score: 143
Period size: 43 Copynumber: 2.0 Consensus size: 43
8725539 TTCAAATCTG
* * *
8725549 CATATATAAACCAACATTAATTTAATTGTTCAGATGGAATAGA
1 CATATAGAAACCAACATTAATTTAATTGCTCAAATGGAATAGA
8725592 CATATAGAAACCAACATTAATTTAATTGCTCAAATGGAATAG
1 CATATAGAAACCAACATTAATTTAATTGCTCAAATGGAATAG
8725634 GAGGAGGAGA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.45, C:0.13, G:0.12, T:0.31
Consensus pattern (43 bp):
CATATAGAAACCAACATTAATTTAATTGCTCAAATGGAATAGA
Found at i:8727498 original size:49 final size:49
Alignment explanation
Indices: 8727400--8727499 Score: 175
Period size: 50 Copynumber: 2.0 Consensus size: 49
8727390 ACCTCCTGGG
8727400 TTTTGCCTATAAAACGCTGTCGTTAATTAGTAGGGGAACTTTGCAGGGT
1 TTTTGCCTATAAAACGCTGTCGTTAATTAGTAGGGGAACTTTGCAGGGT
*
8727449 TTTTGCCTATAAAAACGCTGTCGTTAATTCGTAGGGGAACTTTGC-GGGT
1 TTTTGCCTAT-AAAACGCTGTCGTTAATTAGTAGGGGAACTTTGCAGGGT
8727498 TT
1 TT
8727500 GGGCCTAATA
Statistics
Matches: 49, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
49 16 0.33
50 33 0.67
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (49 bp):
TTTTGCCTATAAAACGCTGTCGTTAATTAGTAGGGGAACTTTGCAGGGT
Found at i:8728764 original size:17 final size:17
Alignment explanation
Indices: 8728725--8728757 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
8728715 GTTATATACT
8728725 GAAAAAAAAAAGTAAAA
1 GAAAAAAAAAAGTAAAA
8728742 GAAAAAAAAAAGTAAA
1 GAAAAAAAAAAGTAAA
8728758 GACAAAACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (17 bp):
GAAAAAAAAAAGTAAAA
Found at i:8730647 original size:22 final size:22
Alignment explanation
Indices: 8730622--8730665 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
8730612 TCTCCAAACT
8730622 TTAAAACATTCTAA-TTATATCA
1 TTAAAACATTC-AAGTTATATCA
**
8730644 TTAAATTATTCAAGTTATATCA
1 TTAAAACATTCAAGTTATATCA
8730666 ATTAGGTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.43
Consensus pattern (22 bp):
TTAAAACATTCAAGTTATATCA
Found at i:8732990 original size:17 final size:17
Alignment explanation
Indices: 8732968--8733001 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8732958 TTTTATTTTT
*
8732968 ATATAAAAAATTAAAAA
1 ATATAAAAAATCAAAAA
*
8732985 ATATAATAAATCAAAAA
1 ATATAAAAAATCAAAAA
8733002 CACTAAAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (17 bp):
ATATAAAAAATCAAAAA
Found at i:8733401 original size:20 final size:19
Alignment explanation
Indices: 8733374--8733412 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
8733364 AATTTTAATA
*
8733374 TATTTTAAAAATAATTTTT
1 TATTTTTAAAATAATTTTT
8733393 TATTTTTAAAATAATTTTT
1 TATTTTTAAAATAATTTTT
8733412 T
1 T
8733413 GGTGTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TATTTTTAAAATAATTTTT
Found at i:8734026 original size:31 final size:31
Alignment explanation
Indices: 8733988--8734049 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
8733978 TAAATAAATT
8733988 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
8734019 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
8734050 TAATTTGCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Found at i:8734628 original size:22 final size:21
Alignment explanation
Indices: 8734596--8734643 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 21
8734586 AAAAAAACAG
8734596 AAAAAAGCAAAAAGCGCAAAA
1 AAAAAAGCAAAAAGCGCAAAA
*
8734617 AAAAGAAGCAAAAGGCGCAAAA
1 AAAA-AAGCAAAAAGCGCAAAA
8734639 AAAAA
1 AAAAA
8734644 GTTGCCTACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 5 0.20
22 20 0.80
ACGTcount: A:0.71, C:0.12, G:0.17, T:0.00
Consensus pattern (21 bp):
AAAAAAGCAAAAAGCGCAAAA
Found at i:8742812 original size:34 final size:34
Alignment explanation
Indices: 8742756--8742821 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
8742746 CAAACACCAG
* *
8742756 AAAATATTTTTCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTTCAGAAAATCATTTTAC-GAAAAGT
8742791 AAAACATTTTTCA-AAAATCATTTTACGAAAA
1 AAAACATTTTTCAGAAAATCATTTTACGAAAA
8742822 ATATTTTACT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 5 0.17
34 12 0.41
35 12 0.41
ACGTcount: A:0.48, C:0.11, G:0.06, T:0.35
Consensus pattern (34 bp):
AAAACATTTTTCAGAAAATCATTTTACGAAAAGT
Found at i:8742814 original size:14 final size:15
Alignment explanation
Indices: 8742791--8742830 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
8742781 ACAGAAAAGT
*
8742791 AAAA-CATTTTTC-A
1 AAAATCATTTTACGA
8742804 AAAATCATTTTACGA
1 AAAATCATTTTACGA
8742819 AAAAT-ATTTTAC
1 AAAATCATTTTAC
8742831 TGGCAATCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 4 0.17
14 14 0.58
15 6 0.25
ACGTcount: A:0.47, C:0.12, G:0.03, T:0.38
Consensus pattern (15 bp):
AAAATCATTTTACGA
Found at i:8754691 original size:29 final size:29
Alignment explanation
Indices: 8754627--8754702 Score: 73
Period size: 29 Copynumber: 2.5 Consensus size: 29
8754617 CCAAAGATCA
* *
8754627 AATTATAAAATTTTAAGAGAATTTTATAAT
1 AATT-TAAAAATTTAAAAGAATTTTATAAT
**
8754657 TTTTTAAAAATTTAAAAGAATTTTA-AAGT
1 AATTTAAAAATTTAAAAGAATTTTATAA-T
8754686 AATTTAATCAAATTTAA
1 AATTTAA--AAATTTAA
8754703 GCCCTTAAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
28 2 0.05
29 25 0.68
30 2 0.05
31 8 0.22
ACGTcount: A:0.50, C:0.01, G:0.05, T:0.43
Consensus pattern (29 bp):
AATTTAAAAATTTAAAAGAATTTTATAAT
Found at i:8782083 original size:23 final size:22
Alignment explanation
Indices: 8782057--8782111 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 22
8782047 AAAAATTAAT
*
8782057 ATAAATTAAATAAAATTTATTTA
1 ATAAATTAAATAAAAATT-TTTA
*
8782080 ATAAAATAAATAAAAATTTTTA
1 ATAAATTAAATAAAAATTTTTA
*
8782102 A-AATTTAAAT
1 ATAAATTAAAT
8782112 TCTTCTGTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 7 0.25
22 5 0.18
23 16 0.57
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
ATAAATTAAATAAAAATTTTTA
Found at i:8782695 original size:24 final size:26
Alignment explanation
Indices: 8782652--8782705 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 26
8782642 TGAGTTAGTG
8782652 ATTTAATATAAATATATAAT-T-ATT
1 ATTTAATATAAATATATAATATAATT
*
8782676 ATTTAATATATATA-ATTAATATAATT
1 ATTTAATATAAATATA-TAATATAATT
8782702 ATTT
1 ATTT
8782706 CTTATAACAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 1 0.04
24 17 0.65
25 1 0.04
26 7 0.27
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (26 bp):
ATTTAATATAAATATATAATATAATT
Found at i:8805430 original size:21 final size:21
Alignment explanation
Indices: 8805404--8805444 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8805394 ATCTGCTCAA
* *
8805404 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
8805425 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
8805445 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:8815635 original size:20 final size:20
Alignment explanation
Indices: 8815599--8815652 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
8815589 TATTTTTTGA
* *
8815599 TAATTTTTTCTTATCTTTTTT
1 TAATTTTTTATT-TCTTTTTC
8815620 TAATTTTTTATTTCTTTTTC
1 TAATTTTTTATTTCTTTTTC
*
8815640 TGATTTTTTATTT
1 TAATTTTTTATTT
8815653 GAAATTTTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 19 0.63
21 11 0.37
ACGTcount: A:0.15, C:0.07, G:0.02, T:0.76
Consensus pattern (20 bp):
TAATTTTTTATTTCTTTTTC
Found at i:8818513 original size:15 final size:15
Alignment explanation
Indices: 8818493--8818535 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
8818483 TCAAAATCCA
*
8818493 ATTTTTTTAAAAAAT
1 ATTTTTATAAAAAAT
8818508 ATTTTTATAAAAAAT
1 ATTTTTATAAAAAAT
*
8818523 -TATATTATAAAAA
1 AT-TTTTATAAAAA
8818536 TGAACATGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 1 0.04
15 24 0.96
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTTTTATAAAAAAT
Found at i:8818819 original size:21 final size:22
Alignment explanation
Indices: 8818795--8818844 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
8818785 TTATGTGTCC
*
8818795 ATATTATATATT-ATAAAAATA
1 ATATTATATATTCATAAAAAAA
8818816 ATA-TACT-TATTCATAAAAAAA
1 ATATTA-TATATTCATAAAAAAA
8818837 ATATTATA
1 ATATTATA
8818845 GTGTTTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
20 6 0.25
21 16 0.67
22 2 0.08
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (22 bp):
ATATTATATATTCATAAAAAAA
Found at i:8821545 original size:21 final size:22
Alignment explanation
Indices: 8821520--8821563 Score: 70
Period size: 24 Copynumber: 1.9 Consensus size: 22
8821510 CACTCTTCCT
8821520 TTTCTTCATCGATTATTGCAGG
1 TTTCTTCATCGATTATTGCAGG
8821542 TTCTTCTTCATCGATTATTGCA
1 -T-TTCTTCATCGATTATTGCA
8821564 CTGTTCACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.48
Consensus pattern (22 bp):
TTTCTTCATCGATTATTGCAGG
Found at i:8821578 original size:24 final size:24
Alignment explanation
Indices: 8821527--8821581 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
8821517 CCTTTTCTTC
* *
8821527 ATCGATTATTGCAGGTTCTTCTTC
1 ATCGATTATTGCAGGTTCTACTTA
*
8821551 ATCGATTATTGCACTGTTC-ACTTA
1 ATCGATTATTGCA-GGTTCTACTTA
8821575 ATCGATT
1 ATCGATT
8821582 TCCCTTTTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 23 0.85
25 4 0.15
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.44
Consensus pattern (24 bp):
ATCGATTATTGCAGGTTCTACTTA
Found at i:8824609 original size:37 final size:37
Alignment explanation
Indices: 8824544--8824653 Score: 179
Period size: 37 Copynumber: 3.0 Consensus size: 37
8824534 TACGTATGAT
* *
8824544 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
8824579 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
8824616 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
8824653 C
1 C
8824654 GAAACTATCA
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
35 10 0.14
36 3 0.04
37 57 0.81
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:8824669 original size:46 final size:46
Alignment explanation
Indices: 8824616--8824838 Score: 266
Period size: 52 Copynumber: 4.6 Consensus size: 46
8824606 TAAGTGTAGC
* *
8824616 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCGAAACTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
** * * *
8824662 CACTTATCACTTTGTCTTTTGATCAGAGAAGTATAGCTGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
8824708 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
8824760 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
8824812 CACCTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
8824839 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 11, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
46 67 0.42
48 1 0.01
50 1 0.01
52 91 0.57
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.34
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:8829120 original size:44 final size:46
Alignment explanation
Indices: 8829004--8829207 Score: 160
Period size: 44 Copynumber: 4.6 Consensus size: 46
8828994 TATTATGATT
*
8829004 TTAT-TAAATTCATATAAGAATATTTATTATTAAGAATTTTATGAAA
1 TTATATAAATTCATATAAGAATATTTAATATTAAGAATTTTAT-AAA
* **
8829050 TTATATATCATT-AT-TAA-ATTATATTTAATATTAATTA-TTT-TAAA
1 TTATATA-AATTCATATAAGA--ATATTTAATATTAAGAATTTTATAAA
* * *
8829094 TTATATAAATTCATATAAGAAAATTTATTATCAAGAATTTTATAAA
1 TTATATAAATTCATATAAGAATATTTAATATTAAGAATTTTATAAA
* ** * **
8829140 TTATAT--ATT-ATAAAATTATATTTAATAATAATTA-TTT-TAAA
1 TTATATAAATTCATATAAGAATATTTAATATTAAGAATTTTATAAA
* *
8829181 TTATACAAATTCATATAAGAAAATTTA
1 TTATATAAATTCATATAAGAATATTTA
8829208 TTAGTAATAA
Statistics
Matches: 122, Mismatches: 24, Indels: 26
0.71 0.14 0.15
Matches are distributed among these distances:
41 9 0.07
42 3 0.02
43 22 0.18
44 38 0.31
45 8 0.07
46 21 0.17
47 18 0.15
48 3 0.02
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.47
Consensus pattern (46 bp):
TTATATAAATTCATATAAGAATATTTAATATTAAGAATTTTATAAA
Found at i:8829155 original size:15 final size:14
Alignment explanation
Indices: 8829132--8829178 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 14
8829122 TATCAAGAAT
8829132 TTTAT-AAATTATA
1 TTTATAAAATTATA
8829145 TATTATAAAATTATA
1 T-TTATAAAATTATA
8829160 TTTAATAATAATTAT-
1 TTT-ATAA-AATTATA
8829175 TTTA
1 TTTA
8829179 AATTATACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 1 0.03
14 7 0.23
15 16 0.53
16 6 0.20
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TTTATAAAATTATA
Found at i:8829179 original size:15 final size:15
Alignment explanation
Indices: 8829137--8829179 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
8829127 AGAATTTTAT
8829137 AAATTATATATT-ATA
1 AAATTATAT-TTAATA
8829152 AAATTATATTTAATA
1 AAATTATATTTAATA
8829167 ATAATTAT-TTTAA
1 A-AATTATATTTAA
8829180 ATTATACAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 2 0.08
15 18 0.69
16 6 0.23
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
AAATTATATTTAATA
Found at i:8829183 original size:87 final size:91
Alignment explanation
Indices: 8829004--8829210 Score: 334
Period size: 87 Copynumber: 2.3 Consensus size: 91
8828994 TATTATGATT
* * *
8829004 TTAT-TAAATTCATATAAGAATATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAA
1 TTATATAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATAAAA
*
8829068 TTATATTTAATATTAATTATTTTAAA
66 TTATATTTAATAATAATTATTTTAAA
8829094 TTATATAAATTCATATAAGAAAATTTATTATCAAGAATTTTAT-AAA-T-TATAT-ATTATAAAA
1 TTATATAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATAAAA
8829155 TTATATTTAATAATAATTATTTTAAA
66 TTATATTTAATAATAATTATTTTAAA
*
8829181 TTATACAAATTCATATAAGAAAATTTATTA
1 TTATATAAATTCATATAAGAAAATTTATTA
8829211 GTAATAATTA
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
87 62 0.56
88 5 0.05
89 1 0.01
90 7 0.06
91 36 0.32
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (91 bp):
TTATATAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATAAAA
TTATATTTAATAATAATTATTTTAAA
Found at i:8829242 original size:47 final size:49
Alignment explanation
Indices: 8829120--8829276 Score: 126
Period size: 47 Copynumber: 3.1 Consensus size: 49
8829110 AAGAAAATTT
* * *
8829120 ATTATCAAGAATTTTATAAATTATATATTATAAAATTATATTTAATAATA
1 ATTATTAAGAATTTTATAAATCATATA-TAGAAAATTATATTTAATAATA
* * * *
8829170 ATTATTTTA-AATTATACAAATTCATATA-AGAAAATT-TA-TTAGTAATA
1 ATTA-TTAAGAATTTTATAAA-TCATATATAGAAAATTATATTTAATAATA
*
8829217 ATTATTAAGAATTTTATTAAATCATATATTTTA-ATTAAAATATATTTAATAATA
1 ATTATTAAGAATTTTA-TAAATCATATA---TAGA--AAATTATATTTAATAATA
8829271 ATTATT
1 ATTATT
8829277 TCAAATTATA
Statistics
Matches: 83, Mismatches: 12, Indels: 20
0.72 0.10 0.17
Matches are distributed among these distances:
46 3 0.04
47 25 0.30
48 5 0.06
49 7 0.08
50 14 0.17
51 9 0.11
52 4 0.05
53 2 0.02
54 14 0.17
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (49 bp):
ATTATTAAGAATTTTATAAATCATATATAGAAAATTATATTTAATAATA
Found at i:8829349 original size:120 final size:120
Alignment explanation
Indices: 8829217--8829515 Score: 580
Period size: 120 Copynumber: 2.5 Consensus size: 120
8829207 ATTAGTAATA
8829217 ATTATTAAGAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAA
1 ATTATTAAGAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAA
*
8829282 TTATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTG
66 TTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTG
8829337 ATTATTAAGAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAA
1 ATTATTAAGAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAA
8829402 TTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTG
66 TTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTG
*
8829457 ATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
1 ATTATTAAGAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTAT
8829516 GTTAAAATAT
Statistics
Matches: 177, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 177 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (120 bp):
ATTATTAAGAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAA
TTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTG
Found at i:8829361 original size:61 final size:61
Alignment explanation
Indices: 8829296--8829486 Score: 194
Period size: 61 Copynumber: 3.2 Consensus size: 61
8829286 ATTTTATAGT
*
8829296 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 ATCATATATTATGATTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
* * * * * * * * * * *
8829357 ATCATATATTTTAATTAAAATATATTTA-ATAATAATTATTTCA-AATT-A-TATTTTA-TAGT
1 ATCATATATTATGATTTAAGTAAATTCATATAAGAA-TA-TTGATTATTAAGAATTTTATTA-A
*
8829416 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 ATCATATATTATGATTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
*
8829477 ATTATATATT
1 ATCATATATT
8829487 TTAATTAAAA
Statistics
Matches: 97, Mismatches: 25, Indels: 16
0.70 0.18 0.12
Matches are distributed among these distances:
58 5 0.05
59 32 0.33
60 14 0.14
61 41 0.42
62 5 0.05
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (61 bp):
ATCATATATTATGATTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
Found at i:8829495 original size:18 final size:17
Alignment explanation
Indices: 8829467--8829501 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8829457 ATTATTAAGA
*
8829467 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8829484 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8829502 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8829721 original size:44 final size:45
Alignment explanation
Indices: 8829658--8829755 Score: 137
Period size: 45 Copynumber: 2.2 Consensus size: 45
8829648 CTATTACACC
*
8829658 TCCATTCCATTCAACCAAACACA-AGA-ATACTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACA-ATAGATATACTATTACGCCTCTAT
* * *
8829702 TCCATTACATTCAACCAAACAATTGATTTGCTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACAATAGATATACTATTACGCCTCTAT
8829747 TCCATTACA
1 TCCATTACA
8829756 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
43 1 0.02
44 22 0.46
45 25 0.52
ACGTcount: A:0.34, C:0.30, G:0.05, T:0.32
Consensus pattern (45 bp):
TCCATTACATTCAACCAAACAATAGATATACTATTACGCCTCTAT
Found at i:8832541 original size:16 final size:16
Alignment explanation
Indices: 8832520--8832550 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8832510 AAAAACGTCC
*
8832520 TAAAAAATTTAATTTT
1 TAAAAAATGTAATTTT
8832536 TAAAAAATGTAATTT
1 TAAAAAATGTAATTT
8832551 ATATAATTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (16 bp):
TAAAAAATGTAATTTT
Found at i:8833271 original size:22 final size:22
Alignment explanation
Indices: 8833246--8833289 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
8833236 TAGTTATATA
8833246 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
8833268 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
8833290 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:8833349 original size:16 final size:17
Alignment explanation
Indices: 8833313--8833349 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
8833303 AATTTTATTT
*
8833313 TAATAATAAATTTTAAA
1 TAATAATAAACTTTAAA
8833330 -AATAAT-AACTTTAAA
1 TAATAATAAACTTTAAA
8833345 TAATA
1 TAATA
8833350 TTATTCACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
TAATAATAAACTTTAAA
Found at i:8840170 original size:20 final size:20
Alignment explanation
Indices: 8840147--8840218 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
8840137 ATTCAAATTA
8840147 TTTTGTATTAATAATAAATG
1 TTTTGTATTAATAATAAATG
* *
8840167 TTTTGTATTATTAATATAT-
1 TTTTGTATTAATAATAAATG
* *
8840186 TATAAATATATTAATAATAAATG
1 T-T--TTGTATTAATAATAAATG
8840209 TTTTGTATTA
1 TTTTGTATTA
8840219 TAAATGTTAA
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
19 1 0.03
20 24 0.60
22 14 0.35
23 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (20 bp):
TTTTGTATTAATAATAAATG
Found at i:8841863 original size:18 final size:18
Alignment explanation
Indices: 8841836--8841928 Score: 114
Period size: 18 Copynumber: 5.2 Consensus size: 18
8841826 TACGACCGTT
8841836 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
8841854 TACGGCACTATTCATGTA
1 TACGGTACTATTCACGTA
* *
8841872 TATGGTACTATTTACGTA
1 TACGGTACTATTCACGTA
** *
8841890 TACGACACTATTCATGTA
1 TACGGTACTATTCACGTA
*
8841908 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
8841926 TAC
1 TAC
8841929 AGTAGTTGGG
Statistics
Matches: 60, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 60 1.00
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.35
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:8841889 original size:36 final size:36
Alignment explanation
Indices: 8841836--8841928 Score: 150
Period size: 36 Copynumber: 2.6 Consensus size: 36
8841826 TACGACCGTT
*
8841836 TACGGTACTATTCACGTATACGGCACTATTCATGTA
1 TACGGTACTATTCACGTATACGACACTATTCATGTA
* *
8841872 TATGGTACTATTTACGTATACGACACTATTCATGTA
1 TACGGTACTATTCACGTATACGACACTATTCATGTA
*
8841908 TACGGTACTGTTCACGTATAC
1 TACGGTACTATTCACGTATAC
8841929 AGTAGTTGGG
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 51 1.00
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.35
Consensus pattern (36 bp):
TACGGTACTATTCACGTATACGACACTATTCATGTA
Found at i:8855037 original size:7 final size:7
Alignment explanation
Indices: 8855025--8855049 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8855015 AAATCGATTT
8855025 TGGATCC
1 TGGATCC
8855032 TGGATCC
1 TGGATCC
8855039 TGGATCC
1 TGGATCC
8855046 TGGA
1 TGGA
8855050 CCCATGTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.24, G:0.32, T:0.28
Consensus pattern (7 bp):
TGGATCC
Found at i:8860565 original size:31 final size:31
Alignment explanation
Indices: 8860527--8860599 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
8860517 TGATTGGGCC
*
8860527 AAGACTAAAATTT-CAAATTTTAAAAAGTACA
1 AAGACTAAAATTTACAAA-TTCAAAAAGTACA
* *
8860558 AGGACTAAAATTTACCAATTCAAAAAGTACA
1 AAGACTAAAATTTACAAATTCAAAAAGTACA
*
8860589 AAAACTAAAAT
1 AAGACTAAAAT
8860600 CGATCAAATA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
31 33 0.92
32 3 0.08
ACGTcount: A:0.56, C:0.12, G:0.07, T:0.25
Consensus pattern (31 bp):
AAGACTAAAATTTACAAATTCAAAAAGTACA
Found at i:8862532 original size:17 final size:18
Alignment explanation
Indices: 8862510--8862557 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
8862500 TTCTCATAAA
8862510 AAATATTA-AAAAATCAG
1 AAATATTATAAAAATCAG
*
8862527 AAATA-TATATAAATCAG
1 AAATATTATAAAAATCAG
*
8862544 AAAAATTATTAAAA
1 AAATATTA-TAAAA
8862558 CTAATATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
16 2 0.08
17 17 0.68
18 2 0.08
19 4 0.16
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.27
Consensus pattern (18 bp):
AAATATTATAAAAATCAG
Found at i:8862572 original size:17 final size:17
Alignment explanation
Indices: 8862552--8862585 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8862542 AGAAAAATTA
*
8862552 TTAAAACTAATATAAAG
1 TTAAAAATAATATAAAG
*
8862569 TTAAAAATATTATAAAG
1 TTAAAAATAATATAAAG
8862586 AAACTCTAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.32
Consensus pattern (17 bp):
TTAAAAATAATATAAAG
Found at i:8862637 original size:20 final size:22
Alignment explanation
Indices: 8862607--8862656 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 22
8862597 AATCTAATAA
* *
8862607 ATTAAAAAAATAT-TTAAAATT
1 ATTATAAAAATATATAAAAATT
*
8862628 -TTATAAAAATGTATAAAAATT
1 ATTATAAAAATATATAAAAATT
8862649 ATTATAAA
1 ATTATAAA
8862657 CTTATAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 10 0.42
21 7 0.29
22 7 0.29
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (22 bp):
ATTATAAAAATATATAAAAATT
Found at i:8863289 original size:9 final size:9
Alignment explanation
Indices: 8863277--8863336 Score: 50
Period size: 10 Copynumber: 6.3 Consensus size: 9
8863267 TTATGATTTT
8863277 TTTTAATAA
1 TTTTAATAA
*
8863286 TTTTTATAA
1 TTTTAATAA
*
8863295 GTTTATATCAA
1 TTTTA-AT-AA
8863306 TTTTAATAAA
1 TTTTAAT-AA
*
8863316 ATTT-ATAA
1 TTTTAATAA
8863324 TTTTCAATAA
1 TTTT-AATAA
8863334 TTT
1 TTT
8863337 GTTATGATCT
Statistics
Matches: 40, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
8 5 0.12
9 13 0.32
10 16 0.40
11 6 0.15
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.55
Consensus pattern (9 bp):
TTTTAATAA
Found at i:8863409 original size:10 final size:10
Alignment explanation
Indices: 8863353--8863416 Score: 53
Period size: 10 Copynumber: 6.4 Consensus size: 10
8863343 ATCTTTCAAG
8863353 AATTTTTATA
1 AATTTTTATA
* *
8863363 CATTCTTATA
1 AATTTTTATA
8863373 GAA-TTTTA-A
1 -AATTTTTATA
*
8863382 ATATTTTTTATT
1 A-A-TTTTTATA
8863394 AA-TTTTATA
1 AATTTTTATA
8863403 AATTTTTATA
1 AATTTTTATA
8863413 AATT
1 AATT
8863417 ATAAATTATA
Statistics
Matches: 42, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
8 1 0.02
9 10 0.24
10 23 0.55
11 7 0.17
12 1 0.02
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.58
Consensus pattern (10 bp):
AATTTTTATA
Found at i:8863783 original size:19 final size:18
Alignment explanation
Indices: 8863707--8863786 Score: 63
Period size: 19 Copynumber: 4.3 Consensus size: 18
8863697 CTACTTTTAT
8863707 TAAAAATTAG-AAAAAATA
1 TAAAAA-TAGAAAAAAATA
* *
8863725 TAATAATCGAAAAAAATA
1 TAAAAATAGAAAAAAATA
* ***
8863743 TGAAAAATTGTAAAATTTTA
1 T-AAAAATAG-AAAAAAATA
8863763 TAAAAATAGAAAAAAAATA
1 TAAAAATAG-AAAAAAATA
8863782 TAAAA
1 TAAAA
8863787 TATATAGAAA
Statistics
Matches: 47, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
17 2 0.04
18 14 0.30
19 24 0.51
20 7 0.15
ACGTcount: A:0.68, C:0.01, G:0.06, T:0.25
Consensus pattern (18 bp):
TAAAAATAGAAAAAAATA
Found at i:8863814 original size:17 final size:16
Alignment explanation
Indices: 8863776--8863814 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
8863766 AAATAGAAAA
8863776 AAAATATAAAATATAT
1 AAAATATAAAATATAT
*
8863792 AGAAATATAAAATTTTAT
1 A-AAATATAAAA-TATAT
8863810 AAAAT
1 AAAAT
8863815 CGTAAGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 14 0.70
18 5 0.25
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (16 bp):
AAAATATAAAATATAT
Found at i:8863842 original size:21 final size:21
Alignment explanation
Indices: 8863800--8863839 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
8863790 ATAGAAATAT
* *
8863800 AAAATTTTATAAAATCGTAAG
1 AAAATTATACAAAATCGTAAG
8863821 AAAATTATACAAAAT-GTAA
1 AAAATTATACAAAATCGTAA
8863840 AGACATATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.30
Consensus pattern (21 bp):
AAAATTATACAAAATCGTAAG
Found at i:8864094 original size:27 final size:27
Alignment explanation
Indices: 8864066--8864117 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
8864056 GATTATTATA
8864066 AAAAATTCTA-ATTTTTAATAAATTTT
1 AAAAATTCTATATTTTTAATAAATTTT
* * *
8864092 AAAATTTTTATATTTTTATTAAATTT
1 AAAAATTCTATATTTTTAATAAATTT
8864118 AATAATTTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (27 bp):
AAAAATTCTATATTTTTAATAAATTTT
Found at i:8864133 original size:18 final size:17
Alignment explanation
Indices: 8864079--8864136 Score: 55
Period size: 19 Copynumber: 3.2 Consensus size: 17
8864069 AATTCTAATT
*
8864079 TTTAATAAATTTTAAAA
1 TTTAATAATTTTTAAAA
*
8864096 TTT-TTATATTTTTATTAAA
1 TTTAATA-ATTTTTA--AAA
8864115 TTTAATAATTTTCTAAAA
1 TTTAATAATTTT-TAAAA
8864133 TTTA
1 TTTA
8864137 TTATTGTTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
16 2 0.06
17 9 0.27
18 7 0.21
19 11 0.33
20 4 0.12
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTAATAATTTTTAAAA
Found at i:8868191 original size:14 final size:13
Alignment explanation
Indices: 8868166--8868190 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8868156 AACAACTAAG
8868166 TAATTTTTAAAAT
1 TAATTTTTAAAAT
8868179 TAATTTTTAAAA
1 TAATTTTTAAAA
8868191 AATATATATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TAATTTTTAAAAT
Found at i:8872911 original size:22 final size:21
Alignment explanation
Indices: 8872885--8872941 Score: 62
Period size: 24 Copynumber: 2.6 Consensus size: 21
8872875 TCTTTTAGTC
*
8872885 TTTTTATATATTTATATATTTTA
1 TTTTTATATATTTATA-A-ATTA
*
8872908 TTTTTTATAAATTTATAAATTA
1 -TTTTTATATATTTATAAATTA
8872930 -TTTTATATATTT
1 TTTTTATATATTT
8872942 TTCAAAATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 11 0.37
22 3 0.10
23 1 0.03
24 15 0.50
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTTATATATTTATAAATTA
Found at i:8872991 original size:28 final size:28
Alignment explanation
Indices: 8872959--8873016 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
8872949 TATTATAGGC
* *
8872959 TTTTTATACATTT-TTAATTGTCTATATT
1 TTTTTATAAATTTATT-ATTGTATATATT
*
8872987 TTTTTATAAATTTATTATTTTATATATT
1 TTTTTATAAATTTATTATTGTATATATT
8873015 TT
1 TT
8873017 AAAATAAGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 24 0.92
29 2 0.08
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (28 bp):
TTTTTATAAATTTATTATTGTATATATT
Found at i:8873058 original size:5 final size:5
Alignment explanation
Indices: 8873048--8873072 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
8873038 CATATTTTAT
8873048 AAATA AAATA AAATA AAATA AAATA
1 AAATA AAATA AAATA AAATA AAATA
8873073 TAACATTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:8877159 original size:24 final size:24
Alignment explanation
Indices: 8877144--8877195 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
8877134 AATCAAAGTC
8877144 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATGCT
* * *
8877168 AAATATATTATACTCATAAATACT
1 AAATATATTATGCTAATAAATGCT
8877192 AAAT
1 AAAT
8877196 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATGCT
Found at i:8881567 original size:24 final size:24
Alignment explanation
Indices: 8881552--8881603 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
8881542 AATTAAAGTC
8881552 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATGCT
* * *
8881576 AAATATATTATACTTATAAATACT
1 AAATATATTATGCTAATAAATGCT
8881600 AAAT
1 AAAT
8881604 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATGCT
Found at i:8887392 original size:27 final size:27
Alignment explanation
Indices: 8887362--8887422 Score: 104
Period size: 27 Copynumber: 2.2 Consensus size: 27
8887352 AAAATTTAAC
*
8887362 TTTCTTTTTATTATTATTTATTTTTCA
1 TTTCTTTTAATTATTATTTATTTTTCA
8887389 TTTCTTTTAATTATTATTTATTTTTCA
1 TTTCTTTTAATTATTATTTATTTTTCA
8887416 TTCTCTT
1 TT-TCTT
8887423 ATGTTTTTCT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 28 0.88
28 4 0.12
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.72
Consensus pattern (27 bp):
TTTCTTTTAATTATTATTTATTTTTCA
Found at i:8887767 original size:27 final size:27
Alignment explanation
Indices: 8887729--8887784 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
8887719 AATCTAAAAA
8887729 TGAATTATTGTGGTGATTTTATAGAAT
1 TGAATTATTGTGGTGATTTTATAGAAT
8887756 TGAATTATTGTGGTGATTTTATAGAAT
1 TGAATTATTGTGGTGATTTTATAGAAT
8887783 TG
1 TG
8887785 CTTGAACCTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.29, C:0.00, G:0.23, T:0.48
Consensus pattern (27 bp):
TGAATTATTGTGGTGATTTTATAGAAT
Found at i:8896729 original size:20 final size:19
Alignment explanation
Indices: 8896693--8896730 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
8896683 ATAAATAAGT
8896693 ATTTTCAAATTACAAATTA
1 ATTTTCAAATTACAAATTA
8896712 ATTTATCAATATTA-AAATT
1 ATTT-TCAA-ATTACAAATT
8896731 TTAAAACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 9 0.53
21 4 0.24
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (19 bp):
ATTTTCAAATTACAAATTA
Found at i:8906192 original size:46 final size:46
Alignment explanation
Indices: 8906139--8906232 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
8906129 CCATGGCAAA
* *
8906139 TTGTGAAAAGTAGGTATGGTGTTTTAGTGAAGAAAACCATATTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
8906185 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
8906231 TT
1 TT
8906233 ATAGCATTGT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (46 bp):
TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
Found at i:8907612 original size:22 final size:23
Alignment explanation
Indices: 8907576--8907620 Score: 83
Period size: 22 Copynumber: 2.0 Consensus size: 23
8907566 AGTCAGGTAA
8907576 TGTAATATCCCGAAAATTACTAC
1 TGTAATATCCCGAAAATTACTAC
8907599 TGTAATA-CCCGAAAATTACTAC
1 TGTAATATCCCGAAAATTACTAC
8907621 AATAAGAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (23 bp):
TGTAATATCCCGAAAATTACTAC
Found at i:8918251 original size:20 final size:21
Alignment explanation
Indices: 8918218--8918258 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
8918208 TTAAACTGAA
8918218 AAGATAAAAATATT-TTTTGT
1 AAGATAAAAATATTGTTTTGT
* *
8918238 AAGATTAAATTATTGTTTTGT
1 AAGATAAAAATATTGTTTTGT
8918259 TTATTTTATG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.49
Consensus pattern (21 bp):
AAGATAAAAATATTGTTTTGT
Found at i:8920208 original size:25 final size:25
Alignment explanation
Indices: 8920157--8920209 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
8920147 ACTTTAGCGC
* ***
8920157 GCTCTCTGATTATTAGCACGTTGGT
1 GCTCTCTGATTACTAGCACGGCAGT
8920182 GCTCTCTGATTACTAGCACGGCAGT
1 GCTCTCTGATTACTAGCACGGCAGT
8920207 GCT
1 GCT
8920210 ATCTATTTAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.17, C:0.25, G:0.25, T:0.34
Consensus pattern (25 bp):
GCTCTCTGATTACTAGCACGGCAGT
Found at i:8920252 original size:22 final size:23
Alignment explanation
Indices: 8920204--8920260 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
8920194 CTAGCACGGC
* *
8920204 AGTGCTATCTATTTAGCACATGT
1 AGTGCTCTCTGTTTAGCACATGT
*
8920227 -GTGCTCTCTGTTTAGCAC-TTT
1 AGTGCTCTCTGTTTAGCACATGT
8920248 AGTGCTCTCTGTT
1 AGTGCTCTCTGTT
8920261 CATTAGCACA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 2 0.07
22 28 0.93
ACGTcount: A:0.16, C:0.21, G:0.19, T:0.44
Consensus pattern (23 bp):
AGTGCTCTCTGTTTAGCACATGT
Found at i:8923348 original size:12 final size:11
Alignment explanation
Indices: 8923328--8923359 Score: 55
Period size: 12 Copynumber: 2.8 Consensus size: 11
8923318 TTGTAAAATA
8923328 ATTATTTTATT
1 ATTATTTTATT
8923339 ATTAATTTTATT
1 ATT-ATTTTATT
8923351 ATTATTTTA
1 ATTATTTTA
8923360 GACGCATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.45
12 11 0.55
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (11 bp):
ATTATTTTATT
Found at i:8923399 original size:25 final size:25
Alignment explanation
Indices: 8923374--8923426 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 25
8923364 CATTTATTTA
8923374 TTAAAT-TATATTTTTATTAATGTTAT
1 TTAAATATA-ATTTTT-TTAATGTTAT
8923400 TTAAATATAATTTTTTTAAAT-TTAT
1 TTAAATATAATTTTTTT-AATGTTAT
8923425 TT
1 TT
8923427 TCAATTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
25 8 0.32
26 15 0.60
27 2 0.08
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (25 bp):
TTAAATATAATTTTTTTAATGTTAT
Found at i:8923412 original size:26 final size:25
Alignment explanation
Indices: 8923369--8923426 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 25
8923359 AGACGCATTT
8923369 ATTTA-TTAAATTATATTTTTATT-A
1 ATTTATTTAAATTATATTTTT-TTAA
8923393 ATGTTATTTAAA-TATAATTTTTTTAA
1 AT-TTATTTAAATTAT-ATTTTTTTAA
8923419 ATTTATTT
1 ATTTATTT
8923427 TCAATTTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
24 2 0.07
25 14 0.47
26 14 0.47
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (25 bp):
ATTTATTTAAATTATATTTTTTTAA
Found at i:8925576 original size:35 final size:35
Alignment explanation
Indices: 8925514--8925599 Score: 106
Period size: 35 Copynumber: 2.5 Consensus size: 35
8925504 ATTTTATTTG
*
8925514 TTTA-ATTATATAATTAATGATATTTAAA-TATAA
1 TTTATATTATATAATTAATGATAATTAAATTATAA
*
8925547 TTTATATTATATGAATTTATGATAATTAAATTATAA
1 TTTATATTATAT-AATTAATGATAATTAAATTATAA
* *
8925583 -TGATATTATATTATTAA
1 TTTATATTATATAATTAA
8925600 ATAAATCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
33 4 0.09
34 11 0.24
35 25 0.56
36 5 0.11
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (35 bp):
TTTATATTATATAATTAATGATAATTAAATTATAA
Found at i:8925585 original size:25 final size:23
Alignment explanation
Indices: 8925541--8925601 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 23
8925531 TGATATTTAA
*
8925541 ATATAATTTATATTATATGA-ATTT
1 ATATAA-TTAAATTATATGATA-TT
8925565 ATGATAATTAAATTATAATGATATT
1 AT-ATAATTAAATTAT-ATGATATT
*
8925590 ATATTATTAAAT
1 ATATAATTAAAT
8925602 AAATCAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 19 0.59
25 12 0.38
26 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (23 bp):
ATATAATTAAATTATATGATATT
Found at i:8927222 original size:13 final size:13
Alignment explanation
Indices: 8927204--8927228 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8927194 TTTTTTTATA
8927204 TTTTTAATTAATC
1 TTTTTAATTAATC
8927217 TTTTTAATTAAT
1 TTTTTAATTAAT
8927229 AAATATATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTTTAATTAATC
Found at i:8938656 original size:5 final size:5
Alignment explanation
Indices: 8938646--8938674 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
8938636 CTATTTTCCT
8938646 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
8938675 GCTTCTTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:8951794 original size:15 final size:15
Alignment explanation
Indices: 8951774--8951803 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8951764 TCCAAATTGT
*
8951774 TTGTTGAAGCTTCCA
1 TTGTTGAAGATTCCA
8951789 TTGTTGAAGATTCCA
1 TTGTTGAAGATTCCA
8951804 GAAAACATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.17, G:0.20, T:0.40
Consensus pattern (15 bp):
TTGTTGAAGATTCCA
Found at i:8954653 original size:22 final size:20
Alignment explanation
Indices: 8954613--8954661 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
8954603 CAATTTAAAA
8954613 TATAAAAATTTATTAATATG
1 TATAAAAATTTATTAATATG
* *
8954633 TATATAAATTTATTAATATA
1 TATAAAAATTTATTAATATG
*
8954653 TGTAAAAAT
1 TATAAAAAT
8954662 AACTTTTCCG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (20 bp):
TATAAAAATTTATTAATATG
Found at i:8954774 original size:20 final size:20
Alignment explanation
Indices: 8954749--8954788 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
8954739 AAATATTTTC
8954749 AGTAAATCATTTTCCAGAAA
1 AGTAAATCATTTTCCAGAAA
*
8954769 AGTAAATTATTTTCCAGAAA
1 AGTAAATCATTTTCCAGAAA
8954789 TCATTTTTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (20 bp):
AGTAAATCATTTTCCAGAAA
Found at i:8955120 original size:58 final size:58
Alignment explanation
Indices: 8955045--8955158 Score: 219
Period size: 58 Copynumber: 2.0 Consensus size: 58
8955035 GAACGATAAA
8955045 CAATGCTAAATAAACTATTTTTGAGTCAAAAGTATTTTTAAACTCAAAGGCAAAATTC
1 CAATGCTAAATAAACTATTTTTGAGTCAAAAGTATTTTTAAACTCAAAGGCAAAATTC
*
8955103 CAATGCTAAATAGACTATTTTTGAGTCAAAAGTATTTTTAAACTCAAAGGCAAAAT
1 CAATGCTAAATAAACTATTTTTGAGTCAAAAGTATTTTTAAACTCAAAGGCAAAAT
8955159 CACTTTCTTT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.43, C:0.13, G:0.11, T:0.32
Consensus pattern (58 bp):
CAATGCTAAATAAACTATTTTTGAGTCAAAAGTATTTTTAAACTCAAAGGCAAAATTC
Found at i:8957130 original size:42 final size:42
Alignment explanation
Indices: 8957071--8957153 Score: 148
Period size: 42 Copynumber: 2.0 Consensus size: 42
8957061 AAATTCAAAG
8957071 GGATAAGAACAAGAGTTCAAACGTTTAAATTTCAAACGTTTT
1 GGATAAGAACAAGAGTTCAAACGTTTAAATTTCAAACGTTTT
* *
8957113 GGATAAGAACAAGAGTTCAAATGTTTGAATTTCAAACGTTT
1 GGATAAGAACAAGAGTTCAAACGTTTAAATTTCAAACGTTT
8957154 CACACATATT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.31
Consensus pattern (42 bp):
GGATAAGAACAAGAGTTCAAACGTTTAAATTTCAAACGTTTT
Found at i:8959983 original size:46 final size:46
Alignment explanation
Indices: 8959909--8960358 Score: 383
Period size: 46 Copynumber: 10.6 Consensus size: 46
8959899 TACGTATGAT
* *
8959909 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
8959953 CACTTATCACTTTGTCACTTGATCAGATAA--GT-G-T--AG-T--
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
8959990 -ACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* *
8960035 CACTTATCACTTTATCTCTTGATCAGATAA--GT-G-T--AG----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* * *
8960071 C-CTTATCACTTTATCTCTTGATCAGAAAAGTGTAGCTAAAGCTAACAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT---AC
* *
8960119 TAACACTTATCACTTTGTCACTTGATCAGATAAGTGTAGTTAAAGCTAA
1 ---CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
8960168 CATTTATCACTTTGTCACTTGATCAGATAA--GTA--T--AG----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
8960204 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* *
8960250 AACTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T--AG----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* *
8960286 CACTTATCACTTTTTCACTTGATGAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* * *
8960332 TACTTATCACTTTATCTCTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
8960359 AGTACTCAAA
Statistics
Matches: 333, Mismatches: 24, Indels: 96
0.74 0.05 0.21
Matches are distributed among these distances:
35 27 0.08
36 84 0.25
37 2 0.01
38 8 0.02
39 4 0.01
40 10 0.03
41 2 0.01
42 10 0.03
43 4 0.01
44 19 0.06
45 5 0.02
46 118 0.35
49 1 0.00
51 1 0.00
52 38 0.11
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:8960001 original size:36 final size:36
Alignment explanation
Indices: 8959954--8960105 Score: 153
Period size: 35 Copynumber: 4.0 Consensus size: 36
8959944 TAAGGCTACC
*
8959954 ACTTATCACTTTGTCACTTGATCAGATAAGTGTAGT
1 ACTTATCACTTTATCACTTGATCAGATAAGTGTAGT
*
8959990 ACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
1 ACTTATCACTTTATCACTTGATCAGATAA--GT-G-T--AG-T
*
8960033 ACCACTTATCACTTTATCTCTTGATCAGATAAGTGTAG-
1 ---ACTTATCACTTTATCACTTGATCAGATAAGTGTAGT
* * *
8960071 CCTTATCACTTTATCTCTTGATCAGAAAAGTGTAG
1 ACTTATCACTTTATCACTTGATCAGATAAGTGTAG
8960106 CTAAAGCTAA
Statistics
Matches: 102, Mismatches: 4, Indels: 21
0.80 0.03 0.17
Matches are distributed among these distances:
35 33 0.32
36 29 0.28
38 2 0.02
39 1 0.01
40 3 0.03
42 3 0.03
43 2 0.02
44 2 0.02
46 27 0.26
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (36 bp):
ACTTATCACTTTATCACTTGATCAGATAAGTGTAGT
Found at i:8960020 original size:82 final size:81
Alignment explanation
Indices: 8959910--8960158 Score: 349
Period size: 82 Copynumber: 3.0 Consensus size: 81
8959900 ACGTATGATC
* *
8959910 ACTTATCAC-TTGTCCCTGATCAGATAAGTGTAGCTAAGGCTACCACTTATCACTTTGTCACTTG
1 ACTTATCACTTTGTCCTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTG
8959974 ATCAGATAAGTGTAGT
66 ATCAGATAAGTGTAGT
* *
8959990 ACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCTCTT
1 ACTTATCACTTTGTC-CTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
8960055 GATCAGATAAGTGTAG-
65 GATCAGATAAGTGTAGT
* * *
8960071 CCTTATCACTTTATCTCTTGATCAGAAAAGTGTAGCTAAAGCTAACACTAACACTTATCACTTTG
1 ACTTATCACTTTGTC-CTTGATCAGATAAGTGTAGCTAAAGCT---AC---CACTTATCACTTTG
8960136 TCACTTGATCAGATAAGTGTAGT
59 TCACTTGATCAGATAAGTGTAGT
8960159 TAAAGCTAAC
Statistics
Matches: 150, Mismatches: 10, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
80 9 0.06
81 44 0.29
82 61 0.41
84 2 0.01
87 34 0.23
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (81 bp):
ACTTATCACTTTGTCCTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTG
ATCAGATAAGTGTAGT
Found at i:8960177 original size:215 final size:214
Alignment explanation
Indices: 8959909--8960330 Score: 693
Period size: 215 Copynumber: 2.0 Consensus size: 214
8959899 TACGTATGAT
* *
8959909 CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTAAGGCTACCACTTATCACTTTGTCACTTG
1 CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTTGTCACTTG
* * *
8959974 ATCAGATAAGTGTAGTACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
66 ATCAGATAAGTATAGCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACAACT
*
8960039 TATCACTTTATCTCTTGATCAGATAAGTGTAGC-CTTATCACTTTATCTCTTGATCAGAAAAGTG
131 TATCACTTTATCTCTTGATCAGATAAGTGTAGCACTTATCACTTTATCACTTGATCAGAAAAGTG
8960103 TAGCTAAAGCTAACACTAA
196 TAGCTAAAGCTAACACTAA
* * *
8960122 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGTTAAAGCTAACATTTATCACTTTGTCACT
1 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTTGTCACT
*
8960187 TGATCAGATAAGTATAGCACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACAA
64 TGATCAGATAAGTATAGCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACAA
* * * *
8960252 CTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCACTTATCACTTTTTCACTTGATGAGATAAG
129 CTTATCACTTTATCTCTTGATCAGATAAGTGTAGCACTTATCACTTTATCACTTGATCAGAAAAG
8960317 TGTAGCTAAAGCTA
194 TGTAGCTAAAGCTA
8960331 CTACTTATCA
Statistics
Matches: 192, Mismatches: 14, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
213 10 0.05
214 5 0.03
215 138 0.72
216 39 0.20
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (214 bp):
CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTTGTCACTTG
ATCAGATAAGTATAGCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACAACT
TATCACTTTATCTCTTGATCAGATAAGTGTAGCACTTATCACTTTATCACTTGATCAGAAAAGTG
TAGCTAAAGCTAACACTAA
Found at i:8960212 original size:36 final size:36
Alignment explanation
Indices: 8960171--8960322 Score: 160
Period size: 36 Copynumber: 3.9 Consensus size: 36
8960161 AAGCTAACAT
8960171 TTATCACTTTGTCACTTGATCAGATAAGTATAGCAC
1 TTATCACTTTGTCACTTGATCAGATAAGTATAGCAC
*
8960207 TTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACAAC
1 TTATCACTTTGTCACTTGATCAGATAA--GTA--T--AG---C-AC
* *
8960253 TTATCACTTTGTCTCTTGATCAGATAAGTGTAGCAC
1 TTATCACTTTGTCACTTGATCAGATAAGTATAGCAC
* * *
8960289 TTATCACTTTTTCACTTGATGAGATAAGTGTAGC
1 TTATCACTTTGTCACTTGATCAGATAAGTATAGC
8960323 TAAAGCTACT
Statistics
Matches: 99, Mismatches: 7, Indels: 20
0.79 0.06 0.16
Matches are distributed among these distances:
36 59 0.60
37 1 0.01
38 3 0.03
40 3 0.03
42 3 0.03
44 2 0.02
45 1 0.01
46 27 0.27
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (36 bp):
TTATCACTTTGTCACTTGATCAGATAAGTATAGCAC
Done.