Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 26 of 240
Found at i:9289908 original size:59 final size:58
Alignment explanation
Indices: 9289728--9290011 Score: 150
Period size: 59 Copynumber: 4.7 Consensus size: 58
9289718 ATGATAAATT
* ** * *
9289728 ATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATT
1 ATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTATATTTTATAGTATC
* * * * * * * *
9289787 ATATATTATGATTTTAGAA-A-A-TTCATATAAGAATATTTAATATTAAGAATTTTATTA-AATC
1 ATATATT-TTA-ATTAAAATATATTTAATATTA-ATTATTTAA-ATT-A-TATTTTA-TAGTATC
9289848 ATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGTATC
1 ATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTATATTTTATAGTATC
* * ** * * * *
9289907 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATT-T-TATTATA-AAT
1 ATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTA-AATTATATTTTATAGTAT
*
9289969 T
58 C
*
9289970 ATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAA
9290012 ATATGATTAA
Statistics
Matches: 167, Mismatches: 37, Indels: 45
0.67 0.15 0.18
Matches are distributed among these distances:
56 12 0.07
57 6 0.04
58 13 0.08
59 39 0.23
60 11 0.07
61 30 0.18
62 15 0.09
63 12 0.07
64 7 0.04
65 6 0.04
66 16 0.10
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (58 bp):
ATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATATTTTATAGTATC
Found at i:9289935 original size:120 final size:122
Alignment explanation
Indices: 9289721--9290011 Score: 462
Period size: 120 Copynumber: 2.4 Consensus size: 122
9289711 TAGTATGATG
* **
9289721 ATAAATTATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
* * *
9289786 TATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTA-T
66 CATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
* *
9289842 -TAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATATTTTATAGTA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTTTATAGTA
* *
9289905 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATT
65 TCATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
9289963 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
9290012 ATATGATTAA
Statistics
Matches: 154, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
119 2 0.01
120 106 0.69
121 1 0.01
122 43 0.28
123 2 0.01
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (122 bp):
ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
CATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
Found at i:9289990 original size:18 final size:19
Alignment explanation
Indices: 9289955--9289991 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
9289945 ATTATTAAGA
9289955 ATTTTATTATAAATTATAT
1 ATTTTATTATAAATTATAT
9289974 ATTTTAATTA-AAA-TATAT
1 ATTTT-ATTATAAATTATAT
9289992 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATTTTATTATAAATTATAT
Found at i:9290248 original size:16 final size:16
Alignment explanation
Indices: 9290227--9290319 Score: 177
Period size: 16 Copynumber: 5.8 Consensus size: 16
9290217 GATTAGCTAT
9290227 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
9290243 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
9290259 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
9290276 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
9290292 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
9290308 TACACCTCTAAT
1 TACACCTCTAAT
9290320 TTAAAACATG
Statistics
Matches: 76, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
16 60 0.79
17 16 0.21
ACGTcount: A:0.37, C:0.38, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:9290281 original size:33 final size:32
Alignment explanation
Indices: 9290227--9290319 Score: 177
Period size: 33 Copynumber: 2.9 Consensus size: 32
9290217 GATTAGCTAT
9290227 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
9290259 TACACCTCTAATCCCAATACACCTCTAATCCAA
1 TACACCTCTAAT-CCAATACACCTCTAATCCAA
9290292 TACACCTCTAATCCAATACACCTCTAAT
1 TACACCTCTAATCCAATACACCTCTAAT
9290320 TTAAAACATG
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
32 28 0.47
33 32 0.53
ACGTcount: A:0.37, C:0.38, G:0.00, T:0.26
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:9298920 original size:32 final size:33
Alignment explanation
Indices: 9298853--9298928 Score: 93
Period size: 32 Copynumber: 2.3 Consensus size: 33
9298843 ATAAAAAATT
* *
9298853 AATATTTTATAGTGTTTAGATGAATTTATGTAA
1 AATATTTTATAGTGTTTAGATAAATTTATCTAA
* *
9298886 AATACTTTATATTGTTT-GATAAATTT-TCTAAA
1 AATATTTTATAGTGTTTAGATAAATTTATCT-AA
9298918 AATATTTTATA
1 AATATTTTATA
9298929 AAAGTTGTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
31 2 0.05
32 20 0.54
33 15 0.41
ACGTcount: A:0.38, C:0.03, G:0.09, T:0.50
Consensus pattern (33 bp):
AATATTTTATAGTGTTTAGATAAATTTATCTAA
Found at i:9299451 original size:26 final size:27
Alignment explanation
Indices: 9299390--9299459 Score: 72
Period size: 29 Copynumber: 2.5 Consensus size: 27
9299380 TTTAAAATTG
9299390 AAATATTAAATAATTTATTAAAATAGTA
1 AAATATT-AATAATTTATTAAAATAGTA
*
9299418 AATTATATTAATAATTTATT-ATATGAGT-
1 AA--ATATTAATAATTTATTAAAAT-AGTA
*
9299446 AAATATAAATAATT
1 AAATATTAATAATT
9299460 AAATATGTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
26 11 0.30
28 7 0.19
29 14 0.38
30 5 0.14
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (27 bp):
AAATATTAATAATTTATTAAAATAGTA
Found at i:9306545 original size:42 final size:42
Alignment explanation
Indices: 9306426--9306572 Score: 141
Period size: 42 Copynumber: 3.4 Consensus size: 42
9306416 TCATTGCCTT
* * * *
9306426 CTTCTTCAGCCAAGCCAGTGGCAACTACTGCCGCTGTTCCAT
1 CTTCTCCAGCCAAGACAGTGGCAACTACTGCCTCTGTTCCAA
* * * *
9306468 CTTCCCCAGCCAAGTCCGTGGCAACTACGGCCTCTGTTCCAA
1 CTTCTCCAGCCAAGACAGTGGCAACTACTGCCTCTGTTCCAA
* * * * **
9306510 CTTCTCCAGCCAGGACAGTTGCAACTGCTGTCTCTGCACCAA
1 CTTCTCCAGCCAAGACAGTGGCAACTACTGCCTCTGTTCCAA
9306552 CTTCTTCTCCAGCCAAGACAG
1 ---CTTCTCCAGCCAAGACAG
9306573 CCCCAACTAC
Statistics
Matches: 84, Mismatches: 18, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
42 67 0.80
45 17 0.20
ACGTcount: A:0.20, C:0.37, G:0.18, T:0.24
Consensus pattern (42 bp):
CTTCTCCAGCCAAGACAGTGGCAACTACTGCCTCTGTTCCAA
Found at i:9309894 original size:19 final size:18
Alignment explanation
Indices: 9309872--9309918 Score: 58
Period size: 20 Copynumber: 2.5 Consensus size: 18
9309862 CATATATGTA
*
9309872 TTATTTTAATAAATGTTTT
1 TTATTTTAATAAAT-TATT
*
9309891 TTATTTTTAATCAATTATT
1 TTA-TTTTAATAAATTATT
9309910 TTATTTTAA
1 TTATTTTAA
9309919 AATATGATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 6 0.24
19 9 0.36
20 10 0.40
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (18 bp):
TTATTTTAATAAATTATT
Found at i:9309900 original size:20 final size:19
Alignment explanation
Indices: 9309875--9309916 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
9309865 ATATGTATTA
*
9309875 TTTTAATAAATGTTTTTTAT
1 TTTTAATAAAT-TATTTTAT
*
9309895 TTTTAATCAATTATTTTAT
1 TTTTAATAAATTATTTTAT
9309914 TTT
1 TTT
9309917 AAAATATGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTTAATAAATTATTTTAT
Found at i:9311976 original size:20 final size:19
Alignment explanation
Indices: 9311955--9311991 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
9311945 TAAAAATATA
*
9311955 TATAAAT-TTTAGAATTTT
1 TATAAATATTTTGAATTTT
9311973 TATAAATATTTTGAATTTT
1 TATAAATATTTTGAATTTT
9311992 AAAAAATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:9311998 original size:19 final size:21
Alignment explanation
Indices: 9311960--9312021 Score: 58
Period size: 20 Copynumber: 3.1 Consensus size: 21
9311950 ATATATATAA
* *
9311960 ATTTTAGAATTTTTATAAA-T
1 ATTTTAGAATTTTAAAAAATT
9311980 ATTTT-GAATTTTAAAAAATT
1 ATTTTAGAATTTTAAAAAATT
* * *
9312000 ATTTTTGAAGTTT-GAAAATT
1 ATTTTAGAATTTTAAAAAATT
9312020 AT
1 AT
9312022 CTTTGTTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
19 11 0.31
20 19 0.53
21 6 0.17
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (21 bp):
ATTTTAGAATTTTAAAAAATT
Found at i:9312132 original size:9 final size:9
Alignment explanation
Indices: 9312116--9312146 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
9312106 ATTCGATTTG
9312116 ACTCGAATA
1 ACTCGAATA
*
9312125 ATTCGAATA
1 ACTCGAATA
9312134 ACTCGAATA
1 ACTCGAATA
9312143 ACTC
1 ACTC
9312147 TATTTGATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.42, C:0.23, G:0.10, T:0.26
Consensus pattern (9 bp):
ACTCGAATA
Found at i:9315278 original size:7 final size:7
Alignment explanation
Indices: 9315266--9315305 Score: 62
Period size: 7 Copynumber: 5.7 Consensus size: 7
9315256 GTTTTTATGG
*
9315266 GTTGCCT
1 GTTGCTT
*
9315273 GTTGCCT
1 GTTGCTT
9315280 GTTGCTT
1 GTTGCTT
9315287 GTTGCTT
1 GTTGCTT
9315294 GTTGCTT
1 GTTGCTT
9315301 GTTGC
1 GTTGC
9315306 AGTAAACATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.00, C:0.20, G:0.30, T:0.50
Consensus pattern (7 bp):
GTTGCTT
Found at i:9316200 original size:20 final size:20
Alignment explanation
Indices: 9316172--9316210 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
9316162 TGTCAATACT
* *
9316172 TTTCTTAAGGTATTGATATA
1 TTTCCTAAGGTATCGATATA
9316192 TTTCCTAAGGTATCGATAT
1 TTTCCTAAGGTATCGATAT
9316211 TTATGCTCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.10, G:0.15, T:0.46
Consensus pattern (20 bp):
TTTCCTAAGGTATCGATATA
Found at i:9319801 original size:11 final size:12
Alignment explanation
Indices: 9319783--9319811 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
9319773 AACACCATTC
9319783 TCTTTTCTTTTT
1 TCTTTTCTTTTT
9319795 T-TTTTCTTTTT
1 TCTTTTCTTTTT
9319806 TCTTTT
1 TCTTTT
9319812 TTAAATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (12 bp):
TCTTTTCTTTTT
Found at i:9322771 original size:69 final size:68
Alignment explanation
Indices: 9322619--9322818 Score: 300
Period size: 65 Copynumber: 3.0 Consensus size: 68
9322609 CTTTTATGAG
* *
9322619 TTGTTTTATCTATTTATTTATTTGCTATTCTTTTACTTTTTAAAAATTTAAATTCGATATTATTT
1 TTGTTTTATCTATTTATTTATTTGTTATTCTTTTAC-TTTTAAAAATTTAAATTTGATATTATTT
*
9322684 ATAT
65 AAAT
9322688 TTGTTTTATC----TATTTATTTGTTATTCTTTTACTTTTAAAATATTTAAATTTGATATTATTT
1 TTGTTTTATCTATTTATTTATTTGTTATTCTTTTACTTTTAAAA-ATTTAAATTTGATATTATTT
9322749 AAAT
65 AAAT
* *
9322753 TTGTTTTATCTATTTATTTATTTGTCATTCTTTTACTTTTTAAACATTTAAATTTGATATTATTT
1 TTGTTTTATCTATTTATTTATTTGTTATTCTTTTAC-TTTTAAAAATTTAAATTTGATATTATTT
9322818 A
65 A
9322819 TACTTCCTTT
Statistics
Matches: 120, Mismatches: 5, Indels: 12
0.88 0.04 0.09
Matches are distributed among these distances:
64 8 0.07
65 53 0.44
69 52 0.43
70 7 0.06
ACGTcount: A:0.28, C:0.07, G:0.04, T:0.61
Consensus pattern (68 bp):
TTGTTTTATCTATTTATTTATTTGTTATTCTTTTACTTTTAAAAATTTAAATTTGATATTATTTA
AAT
Found at i:9322853 original size:69 final size:66
Alignment explanation
Indices: 9322634--9322855 Score: 251
Period size: 69 Copynumber: 3.3 Consensus size: 66
9322624 TTATCTATTT
* *
9322634 ATTTATTTG-CTATTCTTTTACTTTTTAAAAATTTAAATTCGATATTATTTATATTTGTT-TTAT
1 ATTTATTTGTCTATTCTTTTACTTTTTAAAAATTTAAATTTGATATTATTTATATTTTTTATTAT
9322697 C
66 C
*
9322698 TATTTATTTGT-TATTCTTTTAC-TTTTAAAATATTTAAATTTGATATTATTTAAATTTGTTTTA
1 -ATTTATTTGTCTATTCTTTTACTTTTTAAAA-ATTTAAATTTGATATTATTTATA-TT-TTTTA
*
9322761 TCTATTT
62 T-TA-TC
*
9322768 ATTTATTTGTC-ATTCTTTTACTTTTTAAACATTTAAATTTGATATTATTTATACTTCCTTTTCA
1 ATTTATTTGTCTATTCTTTTACTTTTTAAAAATTTAAATTTGATATTATTTATA-TT--TTTT-A
9322832 TTATGC
62 TTAT-C
9322838 ATTTATTT-TCT-TTCTTTT
1 ATTTATTTGTCTATTCTTTT
9322856 TTGCCCTTAT
Statistics
Matches: 135, Mismatches: 9, Indels: 22
0.81 0.05 0.13
Matches are distributed among these distances:
64 8 0.06
65 41 0.30
66 2 0.01
67 3 0.02
68 1 0.01
69 56 0.41
70 22 0.16
71 2 0.01
ACGTcount: A:0.26, C:0.09, G:0.04, T:0.61
Consensus pattern (66 bp):
ATTTATTTGTCTATTCTTTTACTTTTTAAAAATTTAAATTTGATATTATTTATATTTTTTATTAT
C
Found at i:9323013 original size:16 final size:17
Alignment explanation
Indices: 9322986--9323024 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
9322976 TATCTATTAT
9322986 TTATTTTCTTTAT-TCG
1 TTATTTTCTTTATGTCG
9323002 TCTATTTT-TTTATGTCG
1 T-TATTTTCTTTATGTCG
9323019 TTATTT
1 TTATTT
9323025 CAATACTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.13, C:0.10, G:0.08, T:0.69
Consensus pattern (17 bp):
TTATTTTCTTTATGTCG
Found at i:9323947 original size:22 final size:21
Alignment explanation
Indices: 9323921--9324009 Score: 79
Period size: 22 Copynumber: 3.9 Consensus size: 21
9323911 ATTTTCACAC
9323921 CAAAATTTGGACAGCATATATA
1 CAAAATTT-GACAGCATATATA
* *
9323943 CAAAATTTGGACTGCATTTATACA
1 CAAAATTT-GACAGCA--TATATA
9323967 TCAAAATTTGACAGCATATACATA
1 -CAAAATTTGACAGCATAT--ATA
* *
9323991 TATAATTTGACAGCATATA
1 CAAAATTTGACAGCATATA
9324010 CATAAATAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
21 1 0.02
22 18 0.32
23 16 0.29
24 13 0.23
25 8 0.14
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.31
Consensus pattern (21 bp):
CAAAATTTGACAGCATATATA
Found at i:9323998 original size:70 final size:70
Alignment explanation
Indices: 9323924--9324214 Score: 261
Period size: 70 Copynumber: 4.2 Consensus size: 70
9323914 TTCACACCAA
*
9323924 AATTTGGACAGCATATATACAAAATTTGGACTGCATTTATACATCAAAATTTGACAGCATATACA
1 AATTTGGACAGCATATACACAAAATTTGGACTGCATTTATACATCAAAATTTGACAGCATATACA
9323989 TATAT
66 TATAT
* * *
9323994 AATTT-GACAGCATATACATAAATAATTGGACTGCATTTGTACATCAAAATTTGACAGCATATAC
1 AATTTGGACAGCATATACACAAA-ATTTGGACTGCATTTATACATCAAAATTTGACAGCATATAC
9324058 ATATAT
65 ATATAT
* * *
9324064 AA-TTGGACTA-CATTTATACATCAAAATTT-GACAGCA--TATACAT-ATATAATTGGACTGCA
1 AATTTGGAC-AGCA--TATACA-CAAAATTTGGACTGCATTTATACATCA-A-AATTTGACAGCA
*
9324123 TTTGTACATCA-A-
60 --TATACAT-ATAT
* * *
9324135 AATTT-G--A-CATATACATATATAA-TTGGACTGCATTTGTACATCAAAATTTGACAGCATATG
1 AATTTGGACAGCATATACACA-A-AATTTGGACTGCATTTATACATCAAAATTTGACAGCATATA
9324195 CATATAT
64 CATATAT
*
9324202 AA-TTGGACTGCAT
1 AATTTGGACAGCAT
9324215 TTGTACATCA
Statistics
Matches: 178, Mismatches: 19, Indels: 48
0.73 0.08 0.20
Matches are distributed among these distances:
65 2 0.01
66 17 0.10
67 11 0.06
68 14 0.08
69 31 0.17
70 71 0.40
71 10 0.06
72 18 0.10
73 4 0.02
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.34
Consensus pattern (70 bp):
AATTTGGACAGCATATACACAAAATTTGGACTGCATTTATACATCAAAATTTGACAGCATATACA
TATAT
Found at i:9324047 original size:47 final size:47
Alignment explanation
Indices: 9323994--9324244 Score: 436
Period size: 47 Copynumber: 5.4 Consensus size: 47
9323984 ATACATATAT
*
9323994 AATTTGACAGCATATACATAAATAATTGGACTGCATTTGTACATCAA
1 AATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAA
* *
9324041 AATTTGACAGCATATACATATATAATTGGACTACATTTATACATCAA
1 AATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAA
9324088 AATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAA
1 AATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAA
9324135 AATTTG--A-CATATACATATATAATTGGACTGCATTTGTACATCAA
1 AATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAA
*
9324179 AATTTGACAGCATATGCATATATAATTGGACTGCATTTGTACATCAA
1 AATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAA
*
9324226 AATTTGATAGCATATACAT
1 AATTTGACAGCATATACAT
9324245 TCATTTACTC
Statistics
Matches: 193, Mismatches: 8, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
44 43 0.22
45 1 0.01
46 1 0.01
47 148 0.77
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.34
Consensus pattern (47 bp):
AATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAA
Found at i:9324199 original size:91 final size:92
Alignment explanation
Indices: 9323994--9324244 Score: 423
Period size: 91 Copynumber: 2.7 Consensus size: 92
9323984 ATACATATAT
*
9323994 AATTTGACAGCATATACATAAATAATTGGACTGCATTTGTACATCAAAATTTGACAGCATATACA
1 AATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAAAATTTG--AGCATATACA
9324059 TATATAATTGGACTACATTTATACATCAA
64 TATATAATTGGACTACATTTATACATCAA
9324088 AATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAAAATTTGA-CATATACATA
1 AATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAAAATTTGAGCATATACATA
* *
9324152 TATAATTGGACTGCATTTGTACATCAA
66 TATAATTGGACTACATTTATACATCAA
*
9324179 AATTTGACAGCATATGCATATATAATTGGACTGCATTTGTACATCAAAATTTGATAGCATATACA
1 AATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAAAATTTG--AGCATATACA
9324244 T
64 T
9324245 TCATTTACTC
Statistics
Matches: 150, Mismatches: 4, Indels: 6
0.94 0.03 0.04
Matches are distributed among these distances:
91 87 0.58
92 1 0.01
93 1 0.01
94 61 0.41
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.34
Consensus pattern (92 bp):
AATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAAAATTTGAGCATATACATA
TATAATTGGACTACATTTATACATCAA
Found at i:9324516 original size:15 final size:16
Alignment explanation
Indices: 9324496--9324532 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
9324486 TATATGCATT
9324496 ACCATAT-AAATACTA
1 ACCATATAAAATACTA
9324511 ACCATATAAAATACTA
1 ACCATATAAAATACTA
9324527 ATCCAT
1 A-CCAT
9324533 GATTAAAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 7 0.35
16 9 0.45
17 4 0.20
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (16 bp):
ACCATATAAAATACTA
Found at i:9329413 original size:31 final size:31
Alignment explanation
Indices: 9329360--9329434 Score: 80
Period size: 31 Copynumber: 2.4 Consensus size: 31
9329350 TAAAAAATAT
* *
9329360 ATATATATAAAC-ATATCCAATTTACATAAAA
1 ATATATAT-AACTATATCAAATTTAAATAAAA
* *
9329391 ATATATATAACTATGTCAAATTTAAATAATA
1 ATATATATAACTATATCAAATTTAAATAAAA
*
9329422 ATACATGATAACT
1 ATATAT-ATAACT
9329435 TTGAACAACG
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
30 3 0.08
31 28 0.76
32 6 0.16
ACGTcount: A:0.52, C:0.11, G:0.03, T:0.35
Consensus pattern (31 bp):
ATATATATAACTATATCAAATTTAAATAAAA
Found at i:9330465 original size:16 final size:17
Alignment explanation
Indices: 9330434--9330467 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
9330424 AAATGCATCC
*
9330434 TCTTTTCTGTTCTTTTT
1 TCTTTTCTGCTCTTTTT
9330451 TCTTTT-TGCTCTTTTT
1 TCTTTTCTGCTCTTTTT
9330467 T
1 T
9330468 TGTTTGTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.00, C:0.18, G:0.06, T:0.76
Consensus pattern (17 bp):
TCTTTTCTGCTCTTTTT
Found at i:9342288 original size:7 final size:7
Alignment explanation
Indices: 9342278--9342306 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
9342268 GAACTCGAAT
9342278 CTTAAAC
1 CTTAAAC
9342285 CTTAAAC
1 CTTAAAC
9342292 CTTAAAC
1 CTTAAAC
9342299 CTTAAAC
1 CTTAAAC
9342306 C
1 C
9342307 CCAAACCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.41, C:0.31, G:0.00, T:0.28
Consensus pattern (7 bp):
CTTAAAC
Found at i:9354276 original size:23 final size:24
Alignment explanation
Indices: 9354232--9354276 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
9354222 AAAATTTTAT
* *
9354232 ATTGATTTTACAAAATATTTGAAA
1 ATTGATTTTACAAAAAAGTTGAAA
*
9354256 ATTG-TTTTATAAAAAAGTTGA
1 ATTGATTTTACAAAAAAGTTGA
9354277 TTTCGCAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 14 0.78
24 4 0.22
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.42
Consensus pattern (24 bp):
ATTGATTTTACAAAAAAGTTGAAA
Found at i:9357246 original size:3 final size:3
Alignment explanation
Indices: 9357228--9357278 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
9357218 TCAAATACCC
* * * * *
9357228 TTA TTA TT- TTA ATA TTA TTA GTA TTA TTA GTA TTA CTA TTA TTA TAA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
9357275 TTA T
1 TTA T
9357279 GTGCTAGTGT
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:9357411 original size:3 final size:3
Alignment explanation
Indices: 9357403--9357429 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
9357393 TATTCCAATG
9357403 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
9357430 GTTTATGCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:9359762 original size:266 final size:266
Alignment explanation
Indices: 9359288--9359815 Score: 1011
Period size: 266 Copynumber: 2.0 Consensus size: 266
9359278 CGTGATAAGA
9359288 GAAGGATGATAGTTTAATGGAGGACCACACAACCATTGCTCCGTGGCCCGAGAATTTAATGTGAC
1 GAAGGATGATAGTTTAATGGAGGACCACACAACCATTGCTCCGTGGCCCGAGAATTTAATGTGAC
*
9359353 AAGGATTATTTGAGAGCCGCTGAACTTTCTTAAAAGAGAAGCCAACGAGCACCATGAGGTTTAGT
66 AAGGATTATTCGAGAGCCGCTGAACTTTCTTAAAAGAGAAGCCAACGAGCACCATGAGGTTTAGT
*
9359418 GAGCAACGAGTCACGGCCCGGATTGAGTAAAAAGGAGATATAAGATACGTCCCTTTTGAAGAGTT
131 GAGCAACGAGTCACGGACCGGATTGAGTAAAAAGGAGATATAAGATACGTCCCTTTTGAAGAGTT
* *
9359483 CGTGAGACTTATCTTAACGCTCGAATGAAGAAAATGATCGAATGTCTCCGCATATGAGGGCAAAG
196 CGTGAGACTTATCTTAACGCTCAAACGAAGAAAATGATCGAATGTCTCCGCATATGAGGGCAAAG
9359548 CCGTAT
261 CCGTAT
9359554 GAAGGATGATAGTTTAATGGAGGACCACACAACCATTGCTCCGTGGCCCGAGAATTTAATGTGAC
1 GAAGGATGATAGTTTAATGGAGGACCACACAACCATTGCTCCGTGGCCCGAGAATTTAATGTGAC
9359619 AAGGATTATTCGAGAGCCGCTGAACTTTCTTAAAAGAGAAGCCAACGAGCACCATGAGGTTTAGT
66 AAGGATTATTCGAGAGCCGCTGAACTTTCTTAAAAGAGAAGCCAACGAGCACCATGAGGTTTAGT
9359684 GAGCAACGAGTCACGGACCGGATTGAGTAAAAAGGAGATATAAGATACGTCCCTTTTGAAGAGTT
131 GAGCAACGAGTCACGGACCGGATTGAGTAAAAAGGAGATATAAGATACGTCCCTTTTGAAGAGTT
*
9359749 CGTGGGACTTATCTTAACGCTCAAACGAAGAAAATGATCGAATGTCTCCGCATATGAGGGCAAAG
196 CGTGAGACTTATCTTAACGCTCAAACGAAGAAAATGATCGAATGTCTCCGCATATGAGGGCAAAG
9359814 CC
261 CC
9359816 ATATATGTAT
Statistics
Matches: 257, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
266 257 1.00
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.23
Consensus pattern (266 bp):
GAAGGATGATAGTTTAATGGAGGACCACACAACCATTGCTCCGTGGCCCGAGAATTTAATGTGAC
AAGGATTATTCGAGAGCCGCTGAACTTTCTTAAAAGAGAAGCCAACGAGCACCATGAGGTTTAGT
GAGCAACGAGTCACGGACCGGATTGAGTAAAAAGGAGATATAAGATACGTCCCTTTTGAAGAGTT
CGTGAGACTTATCTTAACGCTCAAACGAAGAAAATGATCGAATGTCTCCGCATATGAGGGCAAAG
CCGTAT
Found at i:9360008 original size:62 final size:62
Alignment explanation
Indices: 9359942--9360125 Score: 314
Period size: 62 Copynumber: 3.0 Consensus size: 62
9359932 CACATATCTC
*
9359942 TTCATTCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
* *
9360004 TTCATGCATTAACATTACATTTTATTACATACAATAAATTTCTTAAAATCCAAAAATACGCG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
* * *
9360066 TTCATGCATCAACATTACATTTCATTGCATACAATAAATTTCCTAAAATCCAAAAGTACG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACG
9360126 TCGAGTTTAG
Statistics
Matches: 114, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 114 1.00
ACGTcount: A:0.41, C:0.20, G:0.05, T:0.34
Consensus pattern (62 bp):
TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
Found at i:9365187 original size:177 final size:177
Alignment explanation
Indices: 9364827--9365709 Score: 777
Period size: 177 Copynumber: 5.0 Consensus size: 177
9364817 CACTAGGCGT
* * * * * * * ***
9364827 AAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCA
1 AAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATG
* * * * * * * * * *
9364890 TATTGGTGGCGAAGTAGATCGCAGAAAACAGA-CCTTATCTTCATGTATTGG-CGTGAAGTAGAT
66 TATTGG-CGTGAAGTAGATCGAAGATAGCAGATCC-TGTCTTCCTATATTGGTAG-GAAGTGGAT
* * * * * *
9364953 CGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-
128 CGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGA
*
9365002 ATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATG
1 AAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATG
*
9365067 TATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGA
66 TATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGA
* *
9365132 CGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
131 AGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGA
* *
9365179 AAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAACAGATCTTATCTTCATG
1 AAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATG
* *
9365244 TATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGA
66 TATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGA
*
9365309 AGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGA
131 AGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGA
*** * * * * * * * *
9365356 AAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTA
1 AAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATG
* * * * * * * *
9365420 TATTGGTAG-GAAGTGGATCGACGAT-GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATC
66 TATTGG-CGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATC
* *** * *
9365483 GAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGA
129 GAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGA
* * * * * * * **
9365532 TAGCAGGTCCTGTCTTCCTATATCGGTAG-GAAGTAGATCG-ACG-ATGCAGATCTTGTCTTCCC
1 AAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA-GAAAGCAGATCTTGTCTTCAT
* * * * * * * * * * *
9365594 ATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGG-CGTGAAGTAGAT
65 GTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGAT
* * ** * * *
9365658 CGAAGATTGTAGATCTTGCCTTCCTGTAGTTGATAGCGAAGCAGATCGAAGA
128 CGAAGA-TGCAGATCTTGTCTTCCCATA-TTGGTGGCGAAGTAGATCGAAGA
9365710 TGGCAGATTT
Statistics
Matches: 591, Mismatches: 101, Indels: 29
0.82 0.14 0.04
Matches are distributed among these distances:
175 92 0.16
176 222 0.38
177 262 0.44
178 15 0.03
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (177 bp):
AAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATG
TATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGA
AGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGA
Found at i:9365431 original size:309 final size:309
Alignment explanation
Indices: 9364829--9365504 Score: 1266
Period size: 309 Copynumber: 2.2 Consensus size: 309
9364819 CTAGGCGTAA
* * * * * * *
9364829 GCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATA
1 GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCCATA
9364892 TTGGTGGCGAAGTAGATCGCAGAAAACAGACCTTATCTTCATGTATTGGCGTGAAGTAGATCGAA
66 TTGGTGGCGAAGTAGATCGCAGAAAACAGACCTTATCTTCATGTATTGGCGTGAAGTAGATCGAA
9364957 GGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCA
131 GGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCA
9365022 TATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
196 TATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
9365087 AAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGACGAT
261 AAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGACGAT
9365136 GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCCATA
1 GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCCATA
*
9365201 TTGGTGGCGAAGTAGATCGCAGAAAACAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAA
66 TTGGTGGCGAAGTAGATCGCAGAAAACAGACCTTATCTTCATGTATTGGCGTGAAGTAGATCGAA
9365266 GGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCA
131 GGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCA
9365331 TATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
196 TATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
9365396 AAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGACGAT
261 AAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGACGAT
9365445 GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTC
1 GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTC
9365505 ATGTATTGGC
Statistics
Matches: 359, Mismatches: 8, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
307 22 0.06
308 13 0.04
309 324 0.90
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (309 bp):
GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCCATA
TTGGTGGCGAAGTAGATCGCAGAAAACAGACCTTATCTTCATGTATTGGCGTGAAGTAGATCGAA
GGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCA
TATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
AAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGACGAT
Found at i:9365628 original size:309 final size:309
Alignment explanation
Indices: 9364829--9365636 Score: 1196
Period size: 309 Copynumber: 2.6 Consensus size: 309
9364819 CTAGGCGTAA
* * * * * * * *
9364829 GCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATA
1 GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCACATA
* * * * *
9364892 TTGGTGGCGAAGTAGATCGCAGAAAACAGA-CCTTATCTTCATGTATTGGCGTGAAGTAGATCGA
66 TTGGTCGCGAAGTAGATCGAAGAAAACAGATCC-TATCTTCATATATCGGAGTGAAGTAGATCGA
9364956 AGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCC
130 AGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCC
9365021 ATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
195 ATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
9365086 GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGACGAT
260 GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGACGAT
*
9365136 GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCCATA
1 GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCACATA
* * * * * *
9365201 TTGGTGGCGAAGTAGATCGCAGAAAACAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAA
66 TTGGTCGCGAAGTAGATCGAAGAAAACAGATCCTATCTTCATATATCGGAGTGAAGTAGATCGAA
9365266 GGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCA
131 GGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCA
9365331 TATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
196 TATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
9365396 AAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGACGAT
261 AAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGACGAT
**
9365445 GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTA
1 GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCACATA
* * * * * *
9365510 TTGG-CGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATCGGTAG-GAAGTAGATCGA
66 TTGGTCGCGAAGTAGATCGAAGAAAACAGATCCTATCTTCATATATCGG-AGTGAAGTAGATCGA
* * * * * * * * * *
9365573 CGAT-GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTC
130 AGGTAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCAGATCTTGTCTTC
9365637 ATGTATTGGC
Statistics
Matches: 462, Mismatches: 33, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
307 44 0.10
308 73 0.16
309 344 0.74
310 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (309 bp):
GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCACATA
TTGGTCGCGAAGTAGATCGAAGAAAACAGATCCTATCTTCATATATCGGAGTGAAGTAGATCGAA
GGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCA
TATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
AAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGACGAT
Found at i:9365682 original size:132 final size:132
Alignment explanation
Indices: 9364827--9365717 Score: 947
Period size: 132 Copynumber: 6.7 Consensus size: 132
9364817 CACTAGGCGT
* * * * * * *
9364827 AAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCA
1 AAGCAGATCTTATCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTA
* ** * * *** * *
9364890 TATTGGTGGCGAAGTAGATCG-CAGAAAACAGACCTTATCTTCATGTATTGG-CGTGAAGTAGAT
65 TATTGGTAG-GAAGTAGATCGAC-G-ATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGAT
*
9364953 CGAAGG
127 CGAAGA
* * * * * * * *
9364959 TAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCA
1 AAGCAGATCTTATCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTA
* * *** * *
9365022 TATTGGTGGCGAAGTAGATCG-CAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGAT
65 TATTGGTAG-GAAGTAGATCGAC-G-ATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGAT
9365085 CGAAGA
127 CGAAGA
* * * * * * * * * * *
9365091 TAGCAGGTCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGACGAT-GCAGATCTTGTCTTCCCA
1 AAGCAGATCTTATCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTA
* * * *
9365154 TACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
65 TATTGGTAG-GAAGTAGATCGACG-ATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
*
9365219 GCAGA
128 GAAGA
* * *
9365224 AAACAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTAT
1 AAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTAT
* * *
9365289 ATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
66 ATTGGTAGGAAGTAGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAA
9365354 GA
131 GA
* *
9365356 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTAT
1 AAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTAT
* *
9365421 ATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAA
66 ATTGGTAGGAAGTAGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAA
9365486 GA
131 GA
* *
9365488 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTAT
1 AAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTAT
* *
9365553 ATCGGTAGGAAGTAGATCGACGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAA
66 ATTGGTAGGAAGTAGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAA
9365618 GA
131 GA
* * * * *
9365620 AAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATTGTAGATCTTGCCTTCCTGT
1 AAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTAT
* * *
9365685 AGTTGATAGCGAAGCAGATCGAAGATGGCAGAT
66 A-TTGGTAG-GAAGTAGATCGACGAT-GCAGAT
9365718 TTTACCTCCC
Statistics
Matches: 697, Mismatches: 55, Indels: 11
0.91 0.07 0.01
Matches are distributed among these distances:
132 590 0.85
133 65 0.09
134 36 0.05
135 6 0.01
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (132 bp):
AAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTAT
ATTGGTAGGAAGTAGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAA
GA
Found at i:9365970 original size:97 final size:95
Alignment explanation
Indices: 9365700--9365983 Score: 487
Period size: 95 Copynumber: 3.0 Consensus size: 95
9365690 ATAGCGAAGC
*
9365700 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
9365765 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGACAGTGGAATAGATTGA
9365795 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
9365860 CTCCCTGCATTTGACGGTGGAATGGATTGA
66 CTCCCTGCATTTGACAGTGGAATAGATTGA
*
9365890 AGATCAAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCTGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTCCC--TGACTACAGTGGAGTACATTGAAGCCGATAACTCT
*
9365955 ATCTCCCTGCGTTTGACAGTGGAATAGAT
64 ATCTCCCTGCATTTGACAGTGGAATAGAT
9365984 CAGAGATTAC
Statistics
Matches: 178, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
95 118 0.66
97 60 0.34
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (95 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGCATTTGACAGTGGAATAGATTGA
Found at i:9367488 original size:3 final size:3
Alignment explanation
Indices: 9367470--9367520 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
9367460 TCAAATACCC
* * * * *
9367470 TTA TTA TT- TTA ATA TTA TTA GTA TTA TTA GTA TTA CTA TTA TTA TAA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
9367517 TTA T
1 TTA T
9367521 GTGCTAGTGT
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:9367653 original size:3 final size:3
Alignment explanation
Indices: 9367645--9367674 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
9367635 TATTCCAATG
9367645 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
9367675 GTTTATGCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:9369929 original size:25 final size:23
Alignment explanation
Indices: 9369884--9369930 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
9369874 AACAAGATAA
* *
9369884 TATAATATAAAAATTCGCTCCAT
1 TATAATATAAAAACTCACTCCAT
9369907 TATAATAATAAAAACTCAACTCCA
1 TATAAT-ATAAAAACTC-ACTCCA
9369931 CCAAATTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 6 0.30
24 9 0.45
25 5 0.25
ACGTcount: A:0.49, C:0.19, G:0.02, T:0.30
Consensus pattern (23 bp):
TATAATATAAAAACTCACTCCAT
Found at i:9373946 original size:24 final size:24
Alignment explanation
Indices: 9373910--9373957 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
9373900 ATAGTAATTT
**
9373910 TTTGAATTTTTTTAT-ACTTTTTAA
1 TTTGAATAGTTTTATCA-TTTTTAA
9373934 TTTGAATAGTTTTATCATTTTTAA
1 TTTGAATAGTTTTATCATTTTTAA
9373958 ATTATTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.27, C:0.04, G:0.06, T:0.62
Consensus pattern (24 bp):
TTTGAATAGTTTTATCATTTTTAA
Found at i:9380712 original size:24 final size:24
Alignment explanation
Indices: 9380688--9380768 Score: 87
Period size: 24 Copynumber: 3.4 Consensus size: 24
9380678 TTTTTATATT
*
9380688 ATTATTTATATAAATATATAAATTA
1 ATTATATATATAAATAT-TAAATTA
* *
9380713 ATTATAAAGTAT-ATTATTAAATTA
1 ATTATATA-TATAAATATTAAATTA
*
9380737 ATTATAT-TATAAATATTATATT-
1 ATTATATATATAAATATTAAATTA
9380759 ATTATATATA
1 ATTATATATA
9380769 AAAGAAACAA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
22 10 0.21
23 11 0.23
24 13 0.28
25 10 0.21
26 3 0.06
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (24 bp):
ATTATATATATAAATATTAAATTA
Found at i:9380720 original size:11 final size:11
Alignment explanation
Indices: 9380704--9380742 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
9380694 TATATAAATA
9380704 TATAAATTAAT
1 TATAAATTAAT
*
9380715 TATAAAGTATAT
1 TATAAATTA-AT
9380727 TATTAAATTAAT
1 TA-TAAATTAAT
9380739 TATA
1 TATA
9380743 TTATAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 10 0.42
12 8 0.33
13 6 0.25
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (11 bp):
TATAAATTAAT
Found at i:9380744 original size:17 final size:15
Alignment explanation
Indices: 9380687--9380767 Score: 60
Period size: 15 Copynumber: 5.2 Consensus size: 15
9380677 ATTTTTATAT
9380687 TATTAT-TTATATAAA
1 TATTATATTAT-TAAA
*
9380702 TATATAAATTAATTATAA
1 TAT-TATATT-ATTA-AA
*
9380720 -AGTATATTATTAAA
1 TATTATATTATTAAA
9380734 TTAATTATATTA-TAAA
1 -T-ATTATATTATTAAA
*
9380750 TATTATATTATTATA
1 TATTATATTATTAAA
9380765 TAT
1 TAT
9380768 AAAAGAAACA
Statistics
Matches: 53, Mismatches: 5, Indels: 16
0.72 0.07 0.22
Matches are distributed among these distances:
14 11 0.21
15 14 0.26
16 11 0.21
17 13 0.25
18 4 0.08
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (15 bp):
TATTATATTATTAAA
Found at i:9380754 original size:14 final size:16
Alignment explanation
Indices: 9380722--9380760 Score: 55
Period size: 14 Copynumber: 2.5 Consensus size: 16
9380712 AATTATAAAG
9380722 TATATTATTAAATTAAT
1 TATATTA-TAAATTAAT
9380739 TATATTATAAA-T-AT
1 TATATTATAAATTAAT
9380753 TATATTAT
1 TATATTAT
9380761 TATATATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 10 0.45
15 1 0.05
16 4 0.18
17 7 0.32
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TATATTATAAATTAAT
Found at i:9382094 original size:3 final size:3
Alignment explanation
Indices: 9382086--9382127 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
9382076 GTGAGGTAAG
9382086 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
9382128 GAGTGGGAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:9382311 original size:24 final size:27
Alignment explanation
Indices: 9382279--9382337 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
9382269 CGGATTAGTT
9382279 ATTG-ATTGAAAG-GTG-GAAA-AATG
1 ATTGAATTGAAAGTGTGAGAAAGAATG
**
9382302 ATTGAATTGAAAGTGTGAGAAAGTGTG
1 ATTGAATTGAAAGTGTGAGAAAGAATG
9382329 ATTGAATTG
1 ATTGAATTG
9382338 GGATTATATG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 4 0.13
24 8 0.27
25 3 0.10
26 4 0.13
27 11 0.37
ACGTcount: A:0.39, C:0.00, G:0.31, T:0.31
Consensus pattern (27 bp):
ATTGAATTGAAAGTGTGAGAAAGAATG
Found at i:9382541 original size:37 final size:39
Alignment explanation
Indices: 9382482--9382577 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
9382472 CGGATAGATT
* * * *
9382482 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
9382519 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
9382558 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
9382578 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:9388586 original size:24 final size:24
Alignment explanation
Indices: 9388562--9388642 Score: 87
Period size: 24 Copynumber: 3.4 Consensus size: 24
9388552 TTTTTATATT
*
9388562 ATTATTTATATAAATATATAAATTA
1 ATTATATATATAAATAT-TAAATTA
* *
9388587 ATTATAAAGTAT-ATTATTAAATTA
1 ATTATATA-TATAAATATTAAATTA
*
9388611 ATTATAT-TATAAATATTATATT-
1 ATTATATATATAAATATTAAATTA
9388633 ATTATATATA
1 ATTATATATA
9388643 AAAGAAACAA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
22 10 0.21
23 11 0.23
24 13 0.28
25 10 0.21
26 3 0.06
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (24 bp):
ATTATATATATAAATATTAAATTA
Found at i:9388594 original size:11 final size:11
Alignment explanation
Indices: 9388578--9388616 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
9388568 TATATAAATA
9388578 TATAAATTAAT
1 TATAAATTAAT
*
9388589 TATAAAGTATAT
1 TATAAATTA-AT
9388601 TATTAAATTAAT
1 TA-TAAATTAAT
9388613 TATA
1 TATA
9388617 TTATAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 10 0.42
12 8 0.33
13 6 0.25
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (11 bp):
TATAAATTAAT
Found at i:9388618 original size:17 final size:15
Alignment explanation
Indices: 9388561--9388641 Score: 60
Period size: 15 Copynumber: 5.2 Consensus size: 15
9388551 ATTTTTATAT
9388561 TATTAT-TTATATAAA
1 TATTATATTAT-TAAA
*
9388576 TATATAAATTAATTATAA
1 TAT-TATATT-ATTA-AA
*
9388594 -AGTATATTATTAAA
1 TATTATATTATTAAA
9388608 TTAATTATATTA-TAAA
1 -T-ATTATATTATTAAA
*
9388624 TATTATATTATTATA
1 TATTATATTATTAAA
9388639 TAT
1 TAT
9388642 AAAAGAAACA
Statistics
Matches: 53, Mismatches: 5, Indels: 16
0.72 0.07 0.22
Matches are distributed among these distances:
14 11 0.21
15 14 0.26
16 11 0.21
17 13 0.25
18 4 0.08
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (15 bp):
TATTATATTATTAAA
Found at i:9388628 original size:14 final size:16
Alignment explanation
Indices: 9388596--9388634 Score: 55
Period size: 14 Copynumber: 2.5 Consensus size: 16
9388586 AATTATAAAG
9388596 TATATTATTAAATTAAT
1 TATATTA-TAAATTAAT
9388613 TATATTATAAA-T-AT
1 TATATTATAAATTAAT
9388627 TATATTAT
1 TATATTAT
9388635 TATATATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 10 0.45
15 1 0.05
16 4 0.18
17 7 0.32
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TATATTATAAATTAAT
Found at i:9389969 original size:3 final size:3
Alignment explanation
Indices: 9389961--9389993 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
9389951 GTGAGGTAAG
9389961 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
9389994 GAGTGGGAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:9390177 original size:24 final size:27
Alignment explanation
Indices: 9390145--9390203 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
9390135 CGGATTAGTT
9390145 ATTG-ATTGAAAG-GTG-GAAA-AATG
1 ATTGAATTGAAAGTGTGAGAAAGAATG
**
9390168 ATTGAATTGAAAGTGTGAGAAAGTGTG
1 ATTGAATTGAAAGTGTGAGAAAGAATG
9390195 ATTGAATTG
1 ATTGAATTG
9390204 GGATTATATG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 4 0.13
24 8 0.27
25 3 0.10
26 4 0.13
27 11 0.37
ACGTcount: A:0.39, C:0.00, G:0.31, T:0.31
Consensus pattern (27 bp):
ATTGAATTGAAAGTGTGAGAAAGAATG
Found at i:9390407 original size:37 final size:39
Alignment explanation
Indices: 9390348--9390443 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
9390338 CGGATAGATT
* * * *
9390348 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
9390385 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
9390424 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
9390444 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:9393905 original size:20 final size:20
Alignment explanation
Indices: 9393880--9393918 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
9393870 TTTGAAGATT
9393880 ATTGATAAATATTTTATATA
1 ATTGATAAATATTTTATATA
9393900 ATTGATAAATATTTTATAT
1 ATTGATAAATATTTTATAT
9393919 TTAAGATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (20 bp):
ATTGATAAATATTTTATATA
Found at i:9394931 original size:18 final size:18
Alignment explanation
Indices: 9394908--9394946 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
9394898 TCAAACAAAT
9394908 AATATT-AATTGTTTAAAA
1 AATATTGAA-TGTTTAAAA
*
9394926 AATATTGAATGTTTACAA
1 AATATTGAATGTTTAAAA
9394944 AAT
1 AAT
9394947 TAAATTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 17 0.89
19 2 0.11
ACGTcount: A:0.49, C:0.03, G:0.08, T:0.41
Consensus pattern (18 bp):
AATATTGAATGTTTAAAA
Found at i:9397156 original size:61 final size:60
Alignment explanation
Indices: 9397091--9397262 Score: 192
Period size: 61 Copynumber: 2.9 Consensus size: 60
9397081 TTGTTATTAA
* * *
9397091 ATTTTAATAAAATTATTATTAAATATAATTTAATAAAAATAATAATAAATAACTTAATCAT
1 ATTTTAATAAAATTATTATTAAATATAATTTAATAAAAAT-ATAATATATAACTTAATAAC
* * *
9397152 ATTTTAA-AACAATTATTATTAAATACAATTAAAT-AAAAT-T-ATATATAATTTAATAAC
1 ATTTTAATAA-AATTATTATTAAATATAATTTAATAAAAATATAATATATAACTTAATAAC
*
9397209 ATTCTTAATATAATTATTATTAAAATATGAA-TTAATAAAAATCATAATATATAA
1 ATT-TTAATAAAATTATTATT-AAATAT-AATTTAATAAAAAT-ATAATATATAA
9397263 TGTTATAAAA
Statistics
Matches: 93, Mismatches: 9, Indels: 16
0.79 0.08 0.14
Matches are distributed among these distances:
57 16 0.17
58 15 0.16
59 10 0.11
60 14 0.15
61 29 0.31
62 1 0.01
63 8 0.09
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.41
Consensus pattern (60 bp):
ATTTTAATAAAATTATTATTAAATATAATTTAATAAAAATATAATATATAACTTAATAAC
Found at i:9400830 original size:66 final size:66
Alignment explanation
Indices: 9400722--9400846 Score: 148
Period size: 66 Copynumber: 1.9 Consensus size: 66
9400712 CATTTTGAAC
* * * **
9400722 GTAAGACCATGGCTGGGCTATGGCATTCTGATGATAATACCATAATTGGGTTATGGCACTACAAA
1 GTAAGACCATGGCTGGGCCATGGCATGCTGATGATAAGACCATAATTGGACTATGGCACTACAAA
9400787 T
66 T
*
9400788 GTAAGACCATGG-TAGGGCCATGGCAATGCATG-TG-TAAGACCATAGTTGGACTATGGCAC
1 GTAAGACCATGGCT-GGGCCATGGC-ATGC-TGATGATAAGACCATAATTGGACTATGGCAC
9400847 AAAAAGAACG
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
65 1 0.02
66 42 0.84
67 5 0.10
68 2 0.04
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.26
Consensus pattern (66 bp):
GTAAGACCATGGCTGGGCCATGGCATGCTGATGATAAGACCATAATTGGACTATGGCACTACAAA
T
Found at i:9407242 original size:40 final size:41
Alignment explanation
Indices: 9407155--9407310 Score: 217
Period size: 41 Copynumber: 3.8 Consensus size: 41
9407145 AACGAAAACG
*
9407155 CGCTAAAGACCATGTTCTTTAGCGGCGTTTTTTCTAAGCGC
1 CGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCTAAGCGC
*
9407196 CGCTAAAGAACATGATT-TTTAGCGGTGTTTTTTCTAAGCG-
1 CGCTAAAGAACATG-TTCTTTAGCGGCGTTTTTTCTAAGCGC
* *
9407236 CTCTAAATAACATGTTCTTTAGCGGCGTTTTTTCTTAAGCGC
1 CGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTC-TAAGCGC
* * *
9407278 CGCTAAAGAATATGTTCGTTAGCAGCGTTTTTT
1 CGCTAAAGAACATGTTCTTTAGCGGCGTTTTTT
9407311 ACAAAAACGC
Statistics
Matches: 101, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
39 2 0.02
40 28 0.28
41 41 0.41
42 30 0.30
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.38
Consensus pattern (41 bp):
CGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCTAAGCGC
Found at i:9413031 original size:26 final size:25
Alignment explanation
Indices: 9412995--9413066 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 25
9412985 CTTAATTCTT
9412995 AAGAATTATGTAACTGCTGTATTATG
1 AAGAATTATGTAACTG-TGTATTATG
** *
9413021 AAGAATTATGTTAGTTATGTATTATG
1 AAGAATTATG-TAACTGTGTATTATG
9413047 AA-AATTATGTAAGCTGTGTA
1 AAGAATTATGTAA-CTGTGTA
9413067 CTGTATAAGT
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
24 2 0.05
25 12 0.32
26 21 0.55
27 3 0.08
ACGTcount: A:0.36, C:0.04, G:0.19, T:0.40
Consensus pattern (25 bp):
AAGAATTATGTAACTGTGTATTATG
Found at i:9413142 original size:25 final size:24
Alignment explanation
Indices: 9413013--9413156 Score: 100
Period size: 25 Copynumber: 5.8 Consensus size: 24
9413003 TGTAACTGCT
*
9413013 GTATTATGAAGAATTATGTTAGTTA
1 GTATTATGAA-AATTATGTAAGTTA
9413038 TGTATTATGAAAATTATGTAAGCTGT-
1 -GTATTATGAAAATTATGTAAG-T-TA
*
9413064 GTACTGTAT--AAGTTATGTAAGTTTTA
1 GTA-T-TATGAAAATTATGTAAG--TTA
**
9413090 -TATTATGAAAA-TAAATAAGTTA
1 GTATTATGAAAATTATGTAAGTTA
9413112 TGTATTATGAAAATTATGTAAGTTCA
1 -GTATTATGAAAATTATGTAAGTT-A
* * *
9413138 ATATTATGTAAGTTATGTA
1 GTATTATGAAAATTATGTA
9413157 TTACGAAAAT
Statistics
Matches: 95, Mismatches: 11, Indels: 25
0.73 0.08 0.19
Matches are distributed among these distances:
22 3 0.03
23 3 0.03
24 18 0.19
25 53 0.56
26 14 0.15
27 4 0.04
ACGTcount: A:0.38, C:0.02, G:0.17, T:0.43
Consensus pattern (24 bp):
GTATTATGAAAATTATGTAAGTTA
Found at i:9413323 original size:16 final size:16
Alignment explanation
Indices: 9413247--9413315 Score: 89
Period size: 16 Copynumber: 4.8 Consensus size: 16
9413237 AGGTTATGAA
9413247 ATTATGTAAGTTCAAT
1 ATTATGTAAGTTCAAT
9413263 ATTATGTAAG------
1 ATTATGTAAGTTCAAT
9413273 -TTATGTAAGTTCAAT
1 ATTATGTAAGTTCAAT
9413288 ATTATGTAAGTTCAAT
1 ATTATGTAAGTTCAAT
9413304 ATTATGTAAGTT
1 ATTATGTAAGTT
9413316 ATGTATTACG
Statistics
Matches: 46, Mismatches: 0, Indels: 14
0.77 0.00 0.23
Matches are distributed among these distances:
9 9 0.20
16 37 0.80
ACGTcount: A:0.36, C:0.04, G:0.14, T:0.45
Consensus pattern (16 bp):
ATTATGTAAGTTCAAT
Found at i:9413435 original size:16 final size:16
Alignment explanation
Indices: 9413414--9413500 Score: 64
Period size: 16 Copynumber: 5.6 Consensus size: 16
9413404 GGTTATGAAA
9413414 ATTATGTAAGTTCAAT
1 ATTATGTAAGTTCAAT
9413430 ATTATGTAAG------
1 ATTATGTAAGTTCAAT
9413440 -TTATGTAAGTTCAAT
1 ATTATGTAAGTTCAAT
*
9413455 ATTATGTAAGTT-ATGTAGA
1 ATTATGTAAGTTCA---A-T
9413474 ATTATGTAAGTTCCAAT
1 ATTATGTAAGTT-CAAT
9413491 ATTATGTAAG
1 ATTATGTAAG
9413501 CTATGTATTA
Statistics
Matches: 56, Mismatches: 2, Indels: 25
0.67 0.02 0.30
Matches are distributed among these distances:
9 9 0.16
15 1 0.02
16 21 0.38
17 10 0.18
18 2 0.04
19 12 0.21
21 1 0.02
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.43
Consensus pattern (16 bp):
ATTATGTAAGTTCAAT
Found at i:9413443 original size:25 final size:25
Alignment explanation
Indices: 9413406--9413471 Score: 114
Period size: 25 Copynumber: 2.6 Consensus size: 25
9413396 GTTATGTAGG
* *
9413406 TTATGAAAATTATGTAAGTTCAATA
1 TTATGTAAGTTATGTAAGTTCAATA
9413431 TTATGTAAGTTATGTAAGTTCAATA
1 TTATGTAAGTTATGTAAGTTCAATA
9413456 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
9413472 GAATTATGTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.38, C:0.03, G:0.15, T:0.44
Consensus pattern (25 bp):
TTATGTAAGTTATGTAAGTTCAATA
Found at i:9413580 original size:16 final size:16
Alignment explanation
Indices: 9413559--9413644 Score: 71
Period size: 16 Copynumber: 5.6 Consensus size: 16
9413549 GGTTATGAAA
9413559 ATTATGTAAGTTCAAT
1 ATTATGTAAGTTCAAT
9413575 ATTATGTAAG------
1 ATTATGTAAGTTCAAT
9413585 -TTATGTAAGTTCAAT
1 ATTATGTAAGTTCAAT
*
9413600 ATTATGTAAGTT-ATGTAG
1 ATTATGTAAGTTCA---AT
9413618 ATTATGTAAGTTCCAAT
1 ATTATGTAAGTT-CAAT
9413635 ATTATGTAAG
1 ATTATGTAAG
9413645 CTATGTATTA
Statistics
Matches: 56, Mismatches: 2, Indels: 23
0.69 0.02 0.28
Matches are distributed among these distances:
9 9 0.16
15 1 0.02
16 21 0.38
17 11 0.20
18 13 0.23
20 1 0.02
ACGTcount: A:0.36, C:0.05, G:0.16, T:0.43
Consensus pattern (16 bp):
ATTATGTAAGTTCAAT
Found at i:9413588 original size:25 final size:25
Alignment explanation
Indices: 9413551--9413616 Score: 114
Period size: 25 Copynumber: 2.6 Consensus size: 25
9413541 GTTATGTAGG
* *
9413551 TTATGAAAATTATGTAAGTTCAATA
1 TTATGTAAGTTATGTAAGTTCAATA
9413576 TTATGTAAGTTATGTAAGTTCAATA
1 TTATGTAAGTTATGTAAGTTCAATA
9413601 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
9413617 GATTATGTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.38, C:0.03, G:0.15, T:0.44
Consensus pattern (25 bp):
TTATGTAAGTTATGTAAGTTCAATA
Found at i:9413755 original size:144 final size:145
Alignment explanation
Indices: 9413328--9413735 Score: 791
Period size: 145 Copynumber: 2.8 Consensus size: 145
9413318 GTATTACGAA
* *
9413328 AATTATGTAAGTTCAAAAATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTA
1 AATTATGTAAGTTCCAATATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTA
9413393 TAAGTTATGTAGGTTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTAAGTTCAATATT
66 TAAGTTATGTAGGTTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTAAGTTCAATATT
9413458 ATGTAAGTTATGTAG
131 ATGTAAGTTATGTAG
9413473 AATTATGTAAGTTCCAATATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTA
1 AATTATGTAAGTTCCAATATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTA
9413538 TAAGTTATGTAGGTTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTAAGTTCAATATT
66 TAAGTTATGTAGGTTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTAAGTTCAATATT
9413603 ATGTAAGTTATGTAG
131 ATGTAAGTTATGTAG
9413618 -ATTATGTAAGTTCCAATATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTA
1 AATTATGTAAGTTCCAATATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTA
9413682 TAAGTTATGTAGGTTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTA
66 TAAGTTATGTAGGTTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTA
9413736 CTATGAAAAT
Statistics
Matches: 261, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
144 118 0.45
145 143 0.55
ACGTcount: A:0.36, C:0.04, G:0.18, T:0.42
Consensus pattern (145 bp):
AATTATGTAAGTTCCAATATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTA
TAAGTTATGTAGGTTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTAAGTTCAATATT
ATGTAAGTTATGTAG
Found at i:9415111 original size:39 final size:39
Alignment explanation
Indices: 9415068--9415146 Score: 115
Period size: 39 Copynumber: 2.0 Consensus size: 39
9415058 CTAAAGAAAT
9415068 TGTGCCAAAAC-ATAATACCAAAAAAAGAATACCAAGTAA
1 TGTGCCAAAACAATAATACC-AAAAAAGAATACCAAGTAA
** *
9415107 TGTGCCAAAACAATCCTACCAAAACAGAATACCAAGTAA
1 TGTGCCAAAACAATAATACCAAAAAAGAATACCAAGTAA
9415146 T
1 T
9415147 CTACAAAGTC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
39 30 0.83
40 6 0.17
ACGTcount: A:0.52, C:0.22, G:0.10, T:0.16
Consensus pattern (39 bp):
TGTGCCAAAACAATAATACCAAAAAAGAATACCAAGTAA
Found at i:9416482 original size:12 final size:12
Alignment explanation
Indices: 9416465--9416491 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
9416455 AAATTATGAC
9416465 ATTATTAATATT
1 ATTATTAATATT
9416477 ATTATTAATATT
1 ATTATTAATATT
9416489 ATT
1 ATT
9416492 TAAAAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
ATTATTAATATT
Found at i:9417723 original size:114 final size:114
Alignment explanation
Indices: 9417360--9418075 Score: 737
Period size: 114 Copynumber: 6.3 Consensus size: 114
9417350 AAACCTACAT
* * * *
9417360 GCGTTTTTACATAAGCGCCACTAATTCTAATATACATCAAGACCAAACGCTGCGTTTTGGTTAAG
1 GCGTTTTTCCATAACCGCCACTAATTCTAATATACATCAAGACAAAACGATGCGTTTTGGTTAAG
* * ** * * * *
9417425 ATATTTTGCGGCGATTCTTACAAAGCATCTCTAATACTCTGCTTTAGTG
66 ATAATTTGCGGCGTTTCTTACAAAGCGCCGCTAATACTATGCTATAGCG
* * * * *
9417474 GCCTTTTTCCGTAA-CGCCACTAATTCTTATATACCTCAAGATAAAACGATGCGTTTTGGTTAAG
1 GCGTTTTTCCATAACCGCCACTAATTCTAATATACATCAAGACAAAACGATGCGTTTTGGTTAAG
* * *
9417538 AT-ATTTACGGCATTT-TATACAAA-CGCCGCTAATACTGTGCTATAGCG
66 ATAATTTGCGGCGTTTCT-TACAAAGCGCCGCTAATACTATGCTATAGCG
* * * * *
9417585 GCGTTTTTCCACAATCGCCACTAATTCTAATATACATTAAGACCAAAA-GCTGCATTTTGGTTAA
1 GCGTTTTTCCATAACCGCCACTAATTCTAATATACATCAAGA-CAAAACGATGCGTTTTGGTTAA
* * *
9417649 GATAATTTGCGGCGTTTCTTACAAAGCGCCTCTAATACTATCCTTTAGCG
65 GATAATTTGCGGCGTTTCTTACAAAGCGCCGCTAATACTATGCTATAGCG
* * *
9417699 GCGTTTTTCCGTAACCGCCACTAATTCTTATATACCTCAAGACAAAACGATGCGTTTTGGTTAAG
1 GCGTTTTTCCATAACCGCCACTAATTCTAATATACATCAAGACAAAACGATGCGTTTTGGTTAAG
* * * ** *
9417764 ATATTTTGCGGCGTTTCGTATAAAATGCCGCTAATACTGTGCTATAGCG
66 ATAATTTGCGGCGTTTCTTACAAAGCGCCGCTAATACTATGCTATAGCG
* ** * * * *
9417813 GCGTTTTTCCACAAGTGCCACTAATTCTATTATACATTAAGACAAAACGCTACGTTTTGGTTAAG
1 GCGTTTTTCCATAACCGCCACTAATTCTAATATACATCAAGACAAAACGATGCGTTTTGGTTAAG
* * * * * *
9417878 ATAATTAGCAGCGTTTCTTACAAAGCCCCTCTAATACTCT-CATTTAGCG
66 ATAATTTGCGGCGTTTCTTACAAAGCGCCGCTAATACTATGC-TATAGCG
* * * * *
9417927 GCGTTTTTCCGTAACCGCCACTAATTCTTATATACCTCAAGACCAAACGATGCATTTTGGTTAAG
1 GCGTTTTTCCATAACCGCCACTAATTCTAATATACATCAAGACAAAACGATGCGTTTTGGTTAAG
* * * * * *
9417992 ATATTTTGAGGGCGTTTAC-TAAAAAACGCCGCTAATAATATACTATAGCG
66 ATAATTTG-CGGCGTTT-CTTACAAAGCGCCGCTAATACTATGCTATAGCG
* * * * *
9418042 GCGTTTAT-AATAAACGCCACCAAGTCTAATATAC
1 GCGTTTTTCCATAACCGCCACTAATTCTAATATAC
9418076 CTCGGGAACA
Statistics
Matches: 490, Mismatches: 101, Indels: 22
0.80 0.16 0.04
Matches are distributed among these distances:
111 30 0.06
112 56 0.11
113 74 0.15
114 293 0.60
115 35 0.07
116 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (114 bp):
GCGTTTTTCCATAACCGCCACTAATTCTAATATACATCAAGACAAAACGATGCGTTTTGGTTAAG
ATAATTTGCGGCGTTTCTTACAAAGCGCCGCTAATACTATGCTATAGCG
Found at i:9417873 original size:228 final size:227
Alignment explanation
Indices: 9417360--9418047 Score: 1008
Period size: 228 Copynumber: 3.0 Consensus size: 227
9417350 AAACCTACAT
* * * * *
9417360 GCGTTTTTACATAAGCGCCACTAATTCTAATATACATCAAGACCAAACGCTGCGTTTTGGTTAAG
1 GCGTTTTTCCACAAGTGCCACTAATTCTAATATACATTAAGACAAAACGCTGCGTTTTGGTTAAG
* * * * * *
9417425 ATATTTTGCGGCGATTCTTACAAAGCATCTCTAATACTCTGCTTTAGTGGCCTTTTTCCGTAA-C
66 ATAATTTGCGGCGTTTCTTACAAAGCACCTCTAATACTCTCCTTTAGCGGCGTTTTTCCGTAACC
* * *
9417489 GCCACTAATTCTTATATACCTCAAGATAAAACGATGCGTTTTGGTTAAGATA-TTTACGGCATTT
131 GCCACTAATTCTTATATACCTCAAGACAAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTTT
9417553 -TATACAAACGCCGCTAATACTGTGCTATAGCG
196 CTATA-AAACGCCGCTAATACTGTGCTATAGCG
*
9417585 GCGTTTTTCCACAA-TCGCCACTAATTCTAATATACATTAAGACCAAAA-GCTGCATTTTGGTTA
1 GCGTTTTTCCACAAGT-GCCACTAATTCTAATATACATTAAGA-CAAAACGCTGCGTTTTGGTTA
* *
9417648 AGATAATTTGCGGCGTTTCTTACAAAGCGCCTCTAATACTATCCTTTAGCGGCGTTTTTCCGTAA
64 AGATAATTTGCGGCGTTTCTTACAAAGCACCTCTAATACTCTCCTTTAGCGGCGTTTTTCCGTAA
9417713 CCGCCACTAATTCTTATATACCTCAAGACAAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGT
129 CCGCCACTAATTCTTATATACCTCAAGACAAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGT
*
9417778 TTCGTATAAAATGCCGCTAATACTGTGCTATAGCG
194 TTC-TATAAAACGCCGCTAATACTGTGCTATAGCG
* *
9417813 GCGTTTTTCCACAAGTGCCACTAATTCTATTATACATTAAGACAAAACGCTACGTTTTGGTTAAG
1 GCGTTTTTCCACAAGTGCCACTAATTCTAATATACATTAAGACAAAACGCTGCGTTTTGGTTAAG
* * * *
9417878 ATAATTAGCAGCGTTTCTTACAAAGCCCCTCTAATACTCTCATTTAGCGGCGTTTTTCCGTAACC
66 ATAATTTGCGGCGTTTCTTACAAAGCACCTCTAATACTCTCCTTTAGCGGCGTTTTTCCGTAACC
* * *
9417943 GCCACTAATTCTTATATACCTCAAGACCAAACGATGCATTTTGGTTAAGATATTTTGAGGGCGTT
131 GCCACTAATTCTTATATACCTCAAGACAAAACGATGCGTTTTGGTTAAGATATTTTG-CGGCGTT
* * * *
9418008 TACTAAAAAACGCCGCTAATAATATACTATAGCG
195 T-CTATAAAACGCCGCTAATACTGTGCTATAGCG
9418042 GCGTTT
1 GCGTTT
9418048 ATAATAAACG
Statistics
Matches: 419, Mismatches: 34, Indels: 16
0.89 0.07 0.03
Matches are distributed among these distances:
225 108 0.26
226 56 0.13
227 15 0.04
228 195 0.47
229 44 0.11
230 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (227 bp):
GCGTTTTTCCACAAGTGCCACTAATTCTAATATACATTAAGACAAAACGCTGCGTTTTGGTTAAG
ATAATTTGCGGCGTTTCTTACAAAGCACCTCTAATACTCTCCTTTAGCGGCGTTTTTCCGTAACC
GCCACTAATTCTTATATACCTCAAGACAAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTTT
CTATAAAACGCCGCTAATACTGTGCTATAGCG
Found at i:9431945 original size:22 final size:21
Alignment explanation
Indices: 9431903--9431970 Score: 100
Period size: 22 Copynumber: 3.1 Consensus size: 21
9431893 ACAAACCCCA
*
9431903 TCTCAAATTCCTTCAAAATTC
1 TCTCAATTTCCTTCAAAATTC
9431924 TCTCAATTTCCTTCAAAAATTC
1 TCTCAATTTCCTTC-AAAATTC
*
9431946 TCTCAATTTACTTCCAAAATTC
1 TCTCAATTTCCTT-CAAAATTC
9431968 TCT
1 TCT
9431971 TAAACTCTCA
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
21 13 0.30
22 29 0.67
23 1 0.02
ACGTcount: A:0.31, C:0.28, G:0.00, T:0.41
Consensus pattern (21 bp):
TCTCAATTTCCTTCAAAATTC
Found at i:9431988 original size:52 final size:52
Alignment explanation
Indices: 9431923--9432022 Score: 137
Period size: 52 Copynumber: 1.9 Consensus size: 52
9431913 CTTCAAAATT
* * * * *
9431923 CTCTCAATTTCCTTCAAAAATTCTCTCAATTTACTTCCAAAATTCTCTTAAA
1 CTCTCAAATTCCTTCAAAAATCCTCACAATTTACTTCAAAAAATCTCTTAAA
* *
9431975 CTCTCAAATTCCTTCCAAAATCCTCACAATTTCCTTCAAAAAATCTCT
1 CTCTCAAATTCCTTCAAAAATCCTCACAATTTACTTCAAAAAATCTCT
9432023 CAACTCCATA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
52 41 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.37
Consensus pattern (52 bp):
CTCTCAAATTCCTTCAAAAATCCTCACAATTTACTTCAAAAAATCTCTTAAA
Found at i:9432005 original size:21 final size:21
Alignment explanation
Indices: 9431977--9432025 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 21
9431967 CTCTTAAACT
*
9431977 CTCAAA-TTCCTTCCAAAATC
1 CTCAAATTTCCTTCAAAAATC
9431997 CTCACAATTTCCTTCAAAAAATC
1 CTCA-AATTTCCTTC-AAAAATC
9432020 TCTCAA
1 -CTCAA
9432026 CTCCATATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 4 0.17
21 2 0.08
22 7 0.29
23 7 0.29
24 4 0.17
ACGTcount: A:0.37, C:0.33, G:0.00, T:0.31
Consensus pattern (21 bp):
CTCAAATTTCCTTCAAAAATC
Found at i:9432100 original size:20 final size:20
Alignment explanation
Indices: 9432073--9432117 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
9432063 TTTAAGAAAA
* * *
9432073 TTTT-AAATATTTTTATTTT
1 TTTTAAAATAATTTTAATAT
9432092 TTTTAAAATAATTTTAATAT
1 TTTTAAAATAATTTTAATAT
9432112 TTTTAA
1 TTTTAA
9432118 TATTTTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTTAAAATAATTTTAATAT
Found at i:9432110 original size:29 final size:30
Alignment explanation
Indices: 9432060--9432116 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
9432050 TTCAATTTCA
9432060 TTTTTTAAGAAAATTTTAAATATTTTTATT
1 TTTTTTAAGAAAATTTTAAATATTTTTATT
9432090 TTTTTTAA-AATAATTTT-AATATTTTTA
1 TTTTTTAAGAA-AATTTTAAATATTTTTA
9432117 ATATTTTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 12 0.46
30 14 0.54
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (30 bp):
TTTTTTAAGAAAATTTTAAATATTTTTATT
Found at i:9432123 original size:29 final size:30
Alignment explanation
Indices: 9432061--9432123 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 30
9432051 TCAATTTCAT
* *
9432061 TTTTTAAGAAAATTTTAAATATTTTTATTT
1 TTTTTAAGAAAATTTTAAATATTTTTAATA
9432091 TTTTTAA-AATAATTTT-AATATTTTTAATA
1 TTTTTAAGAA-AATTTTAAATATTTTTAATA
9432120 TTTT
1 TTTT
9432124 CAACAATGGC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
29 17 0.57
30 13 0.43
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (30 bp):
TTTTTAAGAAAATTTTAAATATTTTTAATA
Found at i:9433788 original size:71 final size:68
Alignment explanation
Indices: 9433646--9433790 Score: 218
Period size: 71 Copynumber: 2.1 Consensus size: 68
9433636 GGAATCATCA
* *
9433646 TTAGCAACCCTCGGGGGAATCAGCAATAGCAACCCCTTTTCATTTCAAATATACAATGGATATCG
1 TTAGCAACCCTCGGGGGAATCAGCAATAGCAACCCCTTTACATTTCAAAGATACAATGGATATCG
9433711 CAC
66 CAC
***
9433714 TTAGCAACCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTGGATA
1 TTAGCAACCCTCGGGGGAATCAGCA-ATAGCAA-CCCCTTT-ACATTTCAAAGATACAATGGATA
9433779 TCGCAC
63 TCGCAC
9433785 TTAGCA
1 TTAGCA
9433791 CCACCAATGA
Statistics
Matches: 69, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
68 25 0.36
69 7 0.10
70 7 0.10
71 30 0.43
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (68 bp):
TTAGCAACCCTCGGGGGAATCAGCAATAGCAACCCCTTTACATTTCAAAGATACAATGGATATCG
CAC
Found at i:9433894 original size:104 final size:104
Alignment explanation
Indices: 9433710--9433932 Score: 369
Period size: 104 Copynumber: 2.2 Consensus size: 104
9433700 AATGGATATC
9433710 GCACTTAGCAA-CCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
9433774 GGATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
9433813 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
9433878 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGAT-ATCGCACATAGCACCACCAATAAACCGGGGAATCA
**
9433917 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
9433933 TTATATACAA
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 11 0.10
104 100 0.89
105 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:9440909 original size:104 final size:104
Alignment explanation
Indices: 9440787--9441010 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
9440777 AATGGATATC
9440787 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
9440852 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
9440891 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
9440956 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
9440995 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
9441011 TTTATATACA
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:9445740 original size:114 final size:112
Alignment explanation
Indices: 9445560--9446342 Score: 687
Period size: 114 Copynumber: 6.9 Consensus size: 112
9445550 ATATAGCATA
* * * * * * * **
9445560 ATTAGCAGCGTTTATTT-GTAAGCGCCGCAAAAAATGTTAGCCAAAACACATCGTTTGTTCCCGA
1 ATTAGCGGCGTTT-TTTAG-AAACGCCGCAAAATATCTTAACCAAAACGCATCGTTTGGTCTTGA
* * * * * * * * *
9445624 GGTATATTAGACTTGGTGGCGTTTATTATAAACGCCGCTATAGTATATT
64 GGTATATAAGAATTAGTGGCGGTTATGAAAAACGCCGCTATAGCACAGT
* *
9445673 ATTAGCGGCGTTTTTTAGTAAACGCCCTCAAAATATCTTAACCAAAATGCATCGTTTGGTCTTGA
1 ATTAGCGGCGTTTTTTAG-AAACG-CCGCAAAATATCTTAACCAAAACGCATCGTTTGGTCTTGA
* * *
9445738 GGTATATAAGAATTAGTGGCGGTTACGGAAAAACGCCGCTAAATG-AGAGT
64 GGTATATAAGAATTAGTGGCGGTTA-TGAAAAACGCCGCTATA-GCACAGT
* * * * * * * * * * * *
9445788 ATTAGAGGGGCTTTGTAAGAAACGCTGCTAATTATCTTAACCAAAACGTAGCGTTTTGTCTTAAT
1 ATTAGCGGCG-TTTTTTAGAAACGCCGCAAAATATCTTAACCAAAACGCATCGTTTGGTCTTGAG
** *
9445853 GTATA-ATAGAATTAGTGGCACTTGTGGAAAAACGCCGCTATAGCACAGT
65 GTATATA-AGAATTAGTGGCGGTTAT-GAAAAACGCCGCTATAGCACAGT
* * *
9445902 ATTAGCGGCATTTTATACGAAACGCCGCAAAATATCTTAACCAAAACGCATCGTTTTGTCTTGAG
1 ATTAGCGGCGTTTTTTA-GAAACGCCGCAAAATATCTTAACCAAAACGCATCGTTTGGTCTTGAG
* * * *
9445967 GTATATAAGAATTAGTGGCGGTTACGGAAAAACGCCGCTAAAGGATAGT
65 GTATATAAGAATTAGTGGCGGTTA-TGAAAAACGCCGCTATAGCACAGT
* * * * * * * * *
9446016 ATTAGAGGCGCTTTGTAAGAAACGCCGCAAATTATCTTAACCAAAATGCAGCTTTTGGTCTTAAT
1 ATTAGCGGCG-TTTTTTAGAAACGCCGCAAAATATCTTAACCAAAACGCATCGTTTGGTCTTGAG
* * *
9446081 GTATATTAGAATTAGTGGCGATTGTGGAAAAACGCCGCTATAGCACAGT
65 GTATATAAGAATTAGTGGCGGTTAT-GAAAAACGCCGCTATAGCACAGT
* * **
9446130 ATTAGCGGCGTTTTGTATA-AAATGCCGTAAAATATCTTAACCAAAACGCATCGTTTTATCTTGA
1 ATTAGCGGCGTTTT-T-TAGAAACGCCGCAAAATATCTTAACCAAAACGCATCGTTTGGTCTTGA
* * * * *
9446194 GGTATATAAGAATTAGTGGC-GTTACGGAAAAAGGCCACTAAAGCAGAGT
64 GGTATATAAGAATTAGTGGCGGTTA-TGAAAAACGCCGCTATAGCACAGT
* * * * *
9446243 ATTAGAGATGC-TTTGTAAGAATCGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGA
1 ATTAGCG--GCGTTTTTTAGAAACGCCGCAAAATATCTTAACCAAAACGCATCGTTTGGTCTTGA
* * *
9446307 TGTATATTAGAATTAGTGGCGCTTATGTAAAAACGC
64 GGTATATAAGAATTAGTGGCGGTTATG-AAAAACGC
9446343 ATGTAGGTTT
Statistics
Matches: 534, Mismatches: 115, Indels: 41
0.77 0.17 0.06
Matches are distributed among these distances:
112 4 0.01
113 113 0.21
114 373 0.70
115 37 0.07
116 7 0.01
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (112 bp):
ATTAGCGGCGTTTTTTAGAAACGCCGCAAAATATCTTAACCAAAACGCATCGTTTGGTCTTGAGG
TATATAAGAATTAGTGGCGGTTATGAAAAACGCCGCTATAGCACAGT
Found at i:9445943 original size:228 final size:226
Alignment explanation
Indices: 9445653--9446342 Score: 1001
Period size: 228 Copynumber: 3.0 Consensus size: 226
9445643 CGTTTATTAT
* * * * *
9445653 AAACGCCGCTATAGTATATTATTAGCGGCGTTTTTTAGTAAACGCCCTCAAAATATCTTAACCAA
1 AAACGCCGCTATAGCACAGTATTAGCGGCGTTTTATAG-AAACG-CCGCAAAATATCTTAACCAA
* *
9445718 AATGCATCGTTTGGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAACGCCGCTAAATG
64 AACGCATCGTTTTGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAACGCCGCTAAA-G
* * * *
9445783 AGAGTATTAGAGGGGCTTTGTAAGAAACGCTGCTAATTATCTTAACCAAAACGTAGCGTTTTGTC
128 AGAGTATTAGAGGCGCTTTGTAAGAAACGCCGCAAATTATCTTAACCAAAACGCAGCGTTTTGTC
*
9445848 TTAATGTATAATAGAATTAGTGGCACTTGTGGAA
193 TTAATGTATATTAGAATTAGTGGCACTTGTGGAA
*
9445882 AAACGCCGCTATAGCACAGTATTAGCGGCATTTTATACGAAACGCCGCAAAATATCTTAACCAAA
1 AAACGCCGCTATAGCACAGTATTAGCGGCGTTTTATA-GAAACGCCGCAAAATATCTTAACCAAA
9445947 ACGCATCGTTTTGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAACGCCGCTAAAGGA
65 ACGCATCGTTTTGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAACGCCGCTAAA-GA
* *
9446012 TAGTATTAGAGGCGCTTTGTAAGAAACGCCGCAAATTATCTTAACCAAAATGCAGC-TTTTGGTC
129 GAGTATTAGAGGCGCTTTGTAAGAAACGCCGCAAATTATCTTAACCAAAACGCAGCGTTTT-GTC
9446076 TTAATGTATATTAGAATTAGTGGCGA-TTGTGGAA
193 TTAATGTATATTAGAATTAGTGGC-ACTTGTGGAA
* *
9446110 AAACGCCGCTATAGCACAGTATTAGCGGCGTTTTGTATA-AAATGCCGTAAAATATCTTAACCAA
1 AAACGCCGCTATAGCACAGTATTAGCGGCG-TTT-TATAGAAACGCCGCAAAATATCTTAACCAA
* * *
9446174 AACGCATCGTTTTATCTTGAGGTATATAAGAATTAGTGGC-GTTACGGAAAAAGGCCACTAAAGC
64 AACGCATCGTTTTGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAACGCCGCTAAAG-
** * * *
9446238 AGAGTATTAGAGATGCTTTGTAAGAATCGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTC
128 AGAGTATTAGAGGCGCTTTGTAAGAAACGCCGCAAATTATCTTAACCAAAACGCAGCGTTTTGTC
* * * *
9446303 TTGATGTATATTAGAATTAGTGGCGCTTATGTAA
193 TTAATGTATATTAGAATTAGTGGCACTTGTGGAA
9446337 AAACGC
1 AAACGC
9446343 ATGTAGGTTT
Statistics
Matches: 420, Mismatches: 33, Indels: 18
0.89 0.07 0.04
Matches are distributed among these distances:
226 1 0.00
227 113 0.27
228 260 0.62
229 41 0.10
230 5 0.01
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (226 bp):
AAACGCCGCTATAGCACAGTATTAGCGGCGTTTTATAGAAACGCCGCAAAATATCTTAACCAAAA
CGCATCGTTTTGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAACGCCGCTAAAGAGA
GTATTAGAGGCGCTTTGTAAGAAACGCCGCAAATTATCTTAACCAAAACGCAGCGTTTTGTCTTA
ATGTATATTAGAATTAGTGGCACTTGTGGAA
Found at i:9446168 original size:342 final size:340
Alignment explanation
Indices: 9445582--9446342 Score: 847
Period size: 342 Copynumber: 2.2 Consensus size: 340
9445572 TATTTGTAAG
* * * * ** * * *
9445582 CGCCGCAAAAAATGTTAGCCAAAACACATCG-TTTGTTCCCGAGGTATATTAGACTTGGTGGCGT
1 CGCCGCAAAATATCTTAACCAAAACGCATCGTTTTG-TCTTGAGGTATATTAGAATTAGTGGCGC
* * * * * * * * *
9445646 TTATTATAAACGCCGCTATAGTATATTATTAGCGGCGTTTTTTAGTAAACGCCCTCAAAATATCT
65 TTAGTAAAAACGCCGCTAAAGGATAGTATTAGAGGCGTTTGTAAGTAAACGCCCGCAAAATATCT
* * *
9445711 TAACCAAAATGCATCGTTTGGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAACGCCG
130 TAACCAAAATGCAGCGTTTGGTCTTAAGGTATATAAGAATTAGTGGCGATTACGGAAAAACGCCG
* * * * *
9445776 CTAAATGAGAGTATTAGAGGGGCTTTGTAAGAAACGCTGCTAATTATCTTAACCAAAACGTAGCG
195 CTAAATGACAGTATTAGAGGCGCTTTGTAAGAAACGCCGCTAAATATCTTAACCAAAACGCAGCG
* * ** * *
9445841 TTTTGTCTTAATGTATA-ATAGAATTAGTGGCACTTGTGGAAAAACGCCGCTATAGCACAGTATT
260 TTTTATCTTAAGGTATATA-AGAATTAGTGGC-CTTACGGAAAAACGCCACTAAAGCACAGTATT
*
9445905 AGCG-GCATTT-TATACGAAA
323 AGAGAGC-TTTGTA-A-GAAA
* *
9445924 CGCCGCAAAATATCTTAACCAAAACGCATCGTTTTGTCTTGAGGTATATAAGAATTAGTGGCGGT
1 CGCCGCAAAATATCTTAACCAAAACGCATCGTTTTGTCTTGAGGTATATTAGAATTAGTGGCGCT
* *
9445989 TACGGAAAAACGCCGCTAAAGGATAGTATTAGAGGCGCTTTGTAAG-AAACG-CCGCAAATTATC
66 TA-GTAAAAACGCCGCTAAAGGATAGTATTAGAGGCG-TTTGTAAGTAAACGCCCGCAAAATATC
* * * **
9446052 TTAACCAAAATGCAGCTTTTGGTCTTAATGTATATTAGAATTAGTGGCGATTGTGGAAAAACGCC
129 TTAACCAAAATGCAGCGTTTGGTCTTAAGGTATATAAGAATTAGTGGCGATTACGGAAAAACGCC
* * * *
9446117 GCTATA-GCACAGTATTAGCGGCGTTTTGTATA-AAATGCCG-TAAAATATCTTAACCAAAACGC
194 GCTAAATG-ACAGTATTAGAGGCGCTTTGTA-AGAAACGCCGCT-AAATATCTTAACCAAAACGC
* * * * *
9446179 ATCGTTTTATCTTGAGGTATATAAGAATTAGTGGCGTTACGGAAAAAGGCCACTAAAGCAGAGTA
256 AGCGTTTTATCTTAAGGTATATAAGAATTAGTGGCCTTACGGAAAAACGCCACTAAAGCACAGTA
*
9446244 TTAGAGATGCTTTGTAAGAAT
321 TTAGAGA-GCTTTGTAAGAAA
* * *
9446265 CGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGATGTATATTAGAATTAGTGGCGCT
1 CGCCGCAAAATATCTTAACCAAAACGCATCGTTTTGTCTTGAGGTATATTAGAATTAGTGGCGCT
9446330 TATGTAAAAACGC
66 TA-GTAAAAACGC
9446343 ATGTAGGTTT
Statistics
Matches: 351, Mismatches: 58, Indels: 21
0.82 0.13 0.05
Matches are distributed among these distances:
341 104 0.30
342 199 0.57
343 42 0.12
344 6 0.02
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.29
Consensus pattern (340 bp):
CGCCGCAAAATATCTTAACCAAAACGCATCGTTTTGTCTTGAGGTATATTAGAATTAGTGGCGCT
TAGTAAAAACGCCGCTAAAGGATAGTATTAGAGGCGTTTGTAAGTAAACGCCCGCAAAATATCTT
AACCAAAATGCAGCGTTTGGTCTTAAGGTATATAAGAATTAGTGGCGATTACGGAAAAACGCCGC
TAAATGACAGTATTAGAGGCGCTTTGTAAGAAACGCCGCTAAATATCTTAACCAAAACGCAGCGT
TTTATCTTAAGGTATATAAGAATTAGTGGCCTTACGGAAAAACGCCACTAAAGCACAGTATTAGA
GAGCTTTGTAAGAAA
Found at i:9447236 original size:12 final size:12
Alignment explanation
Indices: 9447219--9447245 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
9447209 AATTTTTTTA
9447219 AATAATATTAAT
1 AATAATATTAAT
9447231 AATAATATTAAT
1 AATAATATTAAT
9447243 AAT
1 AAT
9447246 GTCATAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
AATAATATTAAT
Found at i:9448639 original size:39 final size:39
Alignment explanation
Indices: 9448568--9448646 Score: 115
Period size: 39 Copynumber: 2.0 Consensus size: 39
9448558 GACTTTGTAG
9448568 ATTACTTGGTATTCTGTTTTGGTAGGATTGTTTTGGCAC
1 ATTACTTGGTATTCTGTTTTGGTAGGATTGTTTTGGCAC
* **
9448607 ATTACTTGGTATTCTTTTTTTGGTATTA-TGTTTTGGCAC
1 ATTACTTGGTATTC-TGTTTTGGTAGGATTGTTTTGGCAC
9448646 A
1 A
9448647 ATTTCTTTAG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
39 26 0.72
40 10 0.28
ACGTcount: A:0.16, C:0.10, G:0.22, T:0.52
Consensus pattern (39 bp):
ATTACTTGGTATTCTGTTTTGGTAGGATTGTTTTGGCAC
Found at i:9449955 original size:25 final size:24
Alignment explanation
Indices: 9449871--9449955 Score: 71
Period size: 25 Copynumber: 3.3 Consensus size: 24
9449861 AACTTTTTAG
9449871 ATTTTCATAGTACATAACTTACATA
1 ATTTTCA-AGTACATAACTTACATA
* * * * *
9449896 ATATTGAACTTACTTAACTTTAATAATA
1 ATTTTCAA-GTACATAAC-TT-A-CATA
9449924 ATTTTCACAGTACATAACTTACATA
1 ATTTTCA-AGTACATAACTTACATA
9449949 ATTTTCA
1 ATTTTCA
9449956 TAACCTACAT
Statistics
Matches: 45, Mismatches: 10, Indels: 10
0.69 0.15 0.15
Matches are distributed among these distances:
24 1 0.02
25 22 0.49
26 3 0.07
27 3 0.07
28 15 0.33
29 1 0.02
ACGTcount: A:0.40, C:0.15, G:0.04, T:0.41
Consensus pattern (24 bp):
ATTTTCAAGTACATAACTTACATA
Found at i:9450085 original size:126 final size:120
Alignment explanation
Indices: 9449939--9450204 Score: 390
Period size: 126 Copynumber: 2.2 Consensus size: 120
9449929 CACAGTACAT
* * *
9449939 AACTTACATAATTTTCATAACCTACATAACTTATTCAATACACAACTTACATAATTGTTTATAAT
1 AACTTACATAATTTTCATAACCTACATAACTTATACAATACACAACTTACATAAAT-TTCATAAT
9450004 ACACAGCTTACATAATATT-GAACTTACATAATTTTCATAGTACATAACTTACATAATATTG
65 ACACAGCTTACATAATATTGGAACTTACATAA--TTC----TACATAACTTACATAATATTG
* *
9450065 AACTTACATAATTTTCATAACCTACATAACTTATACAATACACAGCTTACTTAAATTTCATAATA
1 AACTTACATAATTTTCATAACCTACATAACTTATACAATACACAACTTACATAAATTTCATAATA
*
9450130 CATAGCTTACATAATATTGGAACTTACATAATTCTACATAACTTACATAATATTG
66 CACAGCTTACATAATATTGGAACTTACATAATTCTACATAACTTACATAATATTG
* *
9450185 AACTTACATAACTTACATAA
1 AACTTACATAATTTTCATAA
9450205 TATTGAACTT
Statistics
Matches: 131, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
120 39 0.30
124 3 0.02
125 25 0.19
126 64 0.49
ACGTcount: A:0.42, C:0.18, G:0.04, T:0.36
Consensus pattern (120 bp):
AACTTACATAATTTTCATAACCTACATAACTTATACAATACACAACTTACATAAATTTCATAATA
CACAGCTTACATAATATTGGAACTTACATAATTCTACATAACTTACATAATATTG
Found at i:9450190 original size:16 final size:16
Alignment explanation
Indices: 9450135--9450221 Score: 64
Period size: 16 Copynumber: 5.6 Consensus size: 16
9450125 TAATACATAG
9450135 CTTACATAATATTGGAA
1 CTTACATAATATT-GAA
*
9450152 CTTACATAAT-TCTACATAA
1 CTTACATAATAT-T---GAA
9450171 CTTACATAATATTGAA
1 CTTACATAATATTGAA
9450187 CTTAC-----A-T-AA
1 CTTACATAATATTGAA
9450196 CTTACATAATATTGAA
1 CTTACATAATATTGAA
9450212 CTTACATAAT
1 CTTACATAAT
9450222 TTTCATAACC
Statistics
Matches: 56, Mismatches: 3, Indels: 23
0.68 0.04 0.28
Matches are distributed among these distances:
9 7 0.12
10 1 0.02
11 1 0.02
14 1 0.02
15 1 0.02
16 20 0.36
17 11 0.20
19 13 0.23
20 1 0.02
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.37
Consensus pattern (16 bp):
CTTACATAATATTGAA
Found at i:9450195 original size:25 final size:25
Alignment explanation
Indices: 9450164--9450229 Score: 114
Period size: 25 Copynumber: 2.6 Consensus size: 25
9450154 TACATAATTC
9450164 TACATAACTTACATAATATTGAACT
1 TACATAACTTACATAATATTGAACT
9450189 TACATAACTTACATAATATTGAACT
1 TACATAACTTACATAATATTGAACT
* *
9450214 TACATAATTTTCATAA
1 TACATAACTTACATAA
9450230 CCTACATAAC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.44, C:0.15, G:0.03, T:0.38
Consensus pattern (25 bp):
TACATAACTTACATAATATTGAACT
Found at i:9450202 original size:145 final size:145
Alignment explanation
Indices: 9450044--9450491 Score: 824
Period size: 145 Copynumber: 3.0 Consensus size: 145
9450034 ATTTTCATAG
9450044 TACATAACTTACATAATATTGAACTTACATAATTTTCATAACCTACATAACTTATACAATACACA
1 TACATAACTTACATAATATTGAACTTACATAATTTTCATAACCTACATAACTTATACAATACACA
9450109 GCTTACTTAAATTTCATAATACATAGCTTACATAATATTGGAACTTACATAATTCTACATAACTT
66 GCTTACTTAAATTTCATAATACATAGCTTACATAATATTGGAACTTACATAATTCTACATAACTT
9450174 ACATAATATTGAACT
131 ACATAATATTGAACT
9450189 TACATAACTTACATAATATTGAACTTACATAATTTTCATAACCTACATAACTTATACAATACACA
1 TACATAACTTACATAATATTGAACTTACATAATTTTCATAACCTACATAACTTATACAATACACA
9450254 GCTTACTTAAATTTCATAATACATAGCTTACATAATATTGGAACTTACATAATTCTACATAACTT
66 GCTTACTTAAATTTCATAATACATAGCTTACATAATATTGGAACTTACATAATTCTACATAACTT
9450319 ACATAATATTGAACT
131 ACATAATATTGAACT
9450334 TACATAACTTACATAATATTGAACTTACATAATTTTCATAACCTACATAACTTATACAATACACA
1 TACATAACTTACATAATATTGAACTTACATAATTTTCATAACCTACATAACTTATACAATACACA
* *
9450399 GCTTACTTAAATTTCATAATACATAGCTTACATAATTTTTGAACTTACATAATTTTCGTAATACA
66 GCTTACTTAAATTTCATAATACATAGCTTACATAATATTGGAACTTACATAA--TTC----TACA
9450464 TAACTTACATAATATTGAACT
125 TAACTTACATAATATTGAACT
9450485 TACATAA
1 TACATAA
9450492 TATTGAACTT
Statistics
Matches: 295, Mismatches: 2, Indels: 6
0.97 0.01 0.02
Matches are distributed among these distances:
145 260 0.88
147 3 0.01
151 32 0.11
ACGTcount: A:0.42, C:0.18, G:0.04, T:0.36
Consensus pattern (145 bp):
TACATAACTTACATAATATTGAACTTACATAATTTTCATAACCTACATAACTTATACAATACACA
GCTTACTTAAATTTCATAATACATAGCTTACATAATATTGGAACTTACATAATTCTACATAACTT
ACATAATATTGAACT
Found at i:9450335 original size:16 final size:16
Alignment explanation
Indices: 9450280--9450366 Score: 64
Period size: 16 Copynumber: 5.6 Consensus size: 16
9450270 TAATACATAG
9450280 CTTACATAATATTGGAA
1 CTTACATAATATT-GAA
*
9450297 CTTACATAAT-TCTACATAA
1 CTTACATAATAT-T---GAA
9450316 CTTACATAATATTGAA
1 CTTACATAATATTGAA
9450332 CTTAC-----A-T-AA
1 CTTACATAATATTGAA
9450341 CTTACATAATATTGAA
1 CTTACATAATATTGAA
9450357 CTTACATAAT
1 CTTACATAAT
9450367 TTTCATAACC
Statistics
Matches: 56, Mismatches: 3, Indels: 23
0.68 0.04 0.28
Matches are distributed among these distances:
9 7 0.12
10 1 0.02
11 1 0.02
14 1 0.02
15 1 0.02
16 20 0.36
17 11 0.20
19 13 0.23
20 1 0.02
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.37
Consensus pattern (16 bp):
CTTACATAATATTGAA
Found at i:9450340 original size:25 final size:25
Alignment explanation
Indices: 9450309--9450374 Score: 114
Period size: 25 Copynumber: 2.6 Consensus size: 25
9450299 TACATAATTC
9450309 TACATAACTTACATAATATTGAACT
1 TACATAACTTACATAATATTGAACT
9450334 TACATAACTTACATAATATTGAACT
1 TACATAACTTACATAATATTGAACT
* *
9450359 TACATAATTTTCATAA
1 TACATAACTTACATAA
9450375 CCTACATAAC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.44, C:0.15, G:0.03, T:0.38
Consensus pattern (25 bp):
TACATAACTTACATAATATTGAACT
Found at i:9450476 original size:16 final size:16
Alignment explanation
Indices: 9450465--9450533 Score: 89
Period size: 16 Copynumber: 4.8 Consensus size: 16
9450455 CGTAATACAT
9450465 AACTTACATAATATTG
1 AACTTACATAATATTG
9450481 AACTTACATAATATTG
1 AACTTACATAATATTG
9450497 AACTTAC-----A-T-
1 AACTTACATAATATTG
9450506 AACTTACATAATATTG
1 AACTTACATAATATTG
9450522 AACTTACATAAT
1 AACTTACATAAT
9450534 TTTCATAACC
Statistics
Matches: 46, Mismatches: 0, Indels: 14
0.77 0.00 0.23
Matches are distributed among these distances:
9 7 0.15
10 1 0.02
11 1 0.02
14 1 0.02
15 1 0.02
16 35 0.76
ACGTcount: A:0.45, C:0.14, G:0.04, T:0.36
Consensus pattern (16 bp):
AACTTACATAATATTG
Found at i:9450509 original size:25 final size:25
Alignment explanation
Indices: 9450481--9450541 Score: 104
Period size: 25 Copynumber: 2.4 Consensus size: 25
9450471 CATAATATTG
9450481 AACTTACATAATATTGAACTTACAT
1 AACTTACATAATATTGAACTTACAT
9450506 AACTTACATAATATTGAACTTACAT
1 AACTTACATAATATTGAACTTACAT
* *
9450531 AATTTTCATAA
1 AACTTACATAA
9450542 CCTACATAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.44, C:0.15, G:0.03, T:0.38
Consensus pattern (25 bp):
AACTTACATAATATTGAACTTACAT
Found at i:9450531 original size:167 final size:167
Alignment explanation
Indices: 9450314--9450760 Score: 691
Period size: 167 Copynumber: 2.7 Consensus size: 167
9450304 AATTCTACAT
9450314 AACTTACATAATATTGAACTTACATAACTTACATAATATTGAACTTACATAATTTTCATAACCTA
1 AACTTACATAATATTGAACTTACATAACTTACATAATATTGAACTTACATAATTTTCATAACCTA
9450379 CATAACTTATACAATACACAGCTTACTTAAATTTCATAATACATAGCTTACATAATTTTTGAACT
66 CATAACTTATACAATACACAGCTTACTTAAATTTCATAATACATAGCTTACATAATTTTTGAACT
9450444 TACATAATTTTCGTAATACATAACTTACATAATATTG
131 TACATAATTTTCGTAATACATAACTTACATAATATTG
9450481 AACTTACATAATATTGAACTTACATAACTTACATAATATTGAACTTACATAATTTTCATAACCTA
1 AACTTACATAATATTGAACTTACATAACTTACATAATATTGAACTTACATAATTTTCATAACCTA
*
9450546 CATAACCTATACAATACACAGCTTACTTAAATTTCATAATACATAGCTTACATAATTTTTGAACT
66 CATAACTTATACAATACACAGCTTACTTAAATTTCATAATACATAGCTTACATAATTTTTGAACT
9450611 TACATAATTTTCGTAATACATAACTTACATAATATTG
131 TACATAATTTTCGTAATACATAACTTACATAATATTG
* * * * * *
9450648 AACTTACAT-A-ATT----TT-CATAA--TACATAACTTATTTAATTTTCATAA-TAT-AAAACT
1 AACTTACATAATATTGAACTTACATAACTTACATAA--TATTGAACTTACATAATTTTCATAACC
* * * * *
9450702 TACATAACTTATACAGTACACAGCTTACATAATTTTCATAATACATAACTAACATAATT
64 TACATAACTTATACAATACACAGCTTACTTAAATTTCATAATACATAGCTTACATAATT
9450761 CTTCATAATA
Statistics
Matches: 265, Mismatches: 13, Indels: 13
0.91 0.04 0.04
Matches are distributed among these distances:
158 64 0.24
159 2 0.01
160 18 0.07
161 2 0.01
165 3 0.01
166 1 0.00
167 175 0.66
ACGTcount: A:0.42, C:0.17, G:0.04, T:0.38
Consensus pattern (167 bp):
AACTTACATAATATTGAACTTACATAACTTACATAATATTGAACTTACATAATTTTCATAACCTA
CATAACTTATACAATACACAGCTTACTTAAATTTCATAATACATAGCTTACATAATTTTTGAACT
TACATAATTTTCGTAATACATAACTTACATAATATTG
Found at i:9450655 original size:25 final size:24
Alignment explanation
Indices: 9450627--9450712 Score: 73
Period size: 25 Copynumber: 3.5 Consensus size: 24
9450617 ATTTTCGTAA
9450627 TACATAACTTACATAATATTGAACT
1 TACATAACTTACATAATATT-AACT
* * *
9450652 TACATAATTTTCATAATACATAACT
1 TACATAACTTACATAATA-TTAACT
** * * *
9450677 TATTTAATTTTCATAATATAAAACT
1 TACATAACTTACATAATAT-TAACT
9450702 TACATAACTTA
1 TACATAACTTA
9450713 TACAGTACAC
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
25 47 0.98
26 1 0.02
ACGTcount: A:0.44, C:0.14, G:0.01, T:0.41
Consensus pattern (24 bp):
TACATAACTTACATAATATTAACT
Found at i:9450702 original size:50 final size:50
Alignment explanation
Indices: 9450627--9450786 Score: 146
Period size: 50 Copynumber: 3.2 Consensus size: 50
9450617 ATTTTCGTAA
* * ** *
9450627 TACATAACTTACATAATATTGAACTTACATAATTTTCATAATACATAACT
1 TACATAATTTTCATAATATAAAACTTACATAATTTTCATAATACACAACT
** * *
9450677 TATTTAATTTTCATAATATAAAACTTACATAA-CTT-ATACAGTACACAGCT
1 TACATAATTTTCATAATATAAAACTTACATAATTTTCATA-A-TACACAACT
* * * *
9450727 TACATAATTTTCATAATACATAACTAACATAATTCTTCATAATACAGC-AGT
1 TACATAATTTTCATAATATAAAACTTACATAATT-TTCATAATACA-CAACT
9450778 TACATAATT
1 TACATAATT
9450787 CTTAAAGAAT
Statistics
Matches: 87, Mismatches: 17, Indels: 11
0.76 0.15 0.10
Matches are distributed among these distances:
48 3 0.03
49 3 0.03
50 60 0.69
51 14 0.16
52 4 0.05
53 3 0.03
ACGTcount: A:0.43, C:0.16, G:0.03, T:0.38
Consensus pattern (50 bp):
TACATAATTTTCATAATATAAAACTTACATAATTTTCATAATACACAACT
Found at i:9450746 original size:25 final size:25
Alignment explanation
Indices: 9450648--9450786 Score: 131
Period size: 25 Copynumber: 5.5 Consensus size: 25
9450638 CATAATATTG
*
9450648 AACTTACATAATTTTCATAATACAT
1 AACTTACATAATTTTCATAATACAC
** * *
9450673 AACTTATTTAATTTTCATAATATAA
1 AACTTACATAATTTTCATAATACAC
*
9450698 AACTTACATAA-CTT-ATACAGTACAC
1 AACTTACATAATTTTCATA-A-TACAC
* *
9450723 AGCTTACATAATTTTCATAATACAT
1 AACTTACATAATTTTCATAATACAC
*
9450748 AACTAACATAATTCTTCATAATACAGC
1 AACTTACATAATT-TTCATAATACA-C
*
9450775 -AGTTACATAATT
1 AACTTACATAATT
9450787 CTTAAAGAAT
Statistics
Matches: 91, Mismatches: 17, Indels: 11
0.76 0.14 0.09
Matches are distributed among these distances:
23 3 0.03
24 3 0.03
25 58 0.64
26 24 0.26
27 3 0.03
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.37
Consensus pattern (25 bp):
AACTTACATAATTTTCATAATACAC
Found at i:9456622 original size:42 final size:42
Alignment explanation
Indices: 9456574--9456735 Score: 229
Period size: 42 Copynumber: 3.9 Consensus size: 42
9456564 GCGTTTTTGT
* * *
9456574 AAAAAACGCTGCTAACGAACATATTCTTTAGCGGCGCTTA-A
1 AAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGA
* *
9456615 GAAAAAACGCCGCTAAAGAACATGTTATTTAGAGGCGCTTAGA
1 -AAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGA
*
9456658 AAAAAACACCGCTAAA-AATCATGTTCTTTAGCGGCGCTTAGA
1 AAAAAACGCCGCTAAAGAA-CATGTTCTTTAGCGGCGCTTAGA
*
9456700 AAAAAACGCCGCTAAAGAACATGGTCTTTAGCGGCG
1 AAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG
9456736 TTTTCGTTTG
Statistics
Matches: 107, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
41 2 0.02
42 102 0.95
43 3 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (42 bp):
AAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGA
Found at i:9463243 original size:33 final size:33
Alignment explanation
Indices: 9463095--9463244 Score: 88
Period size: 33 Copynumber: 4.5 Consensus size: 33
9463085 TGGCCCTACC
** * **
9463095 ATGGTCTTACATTTGTAGTGCCATAACCCAATT
1 ATGGTCTTACATTTAAAATGCCATAACCCAGCT
* * * * *
9463128 ATGGTATTATCA-TCAGAATGCCATAGCCCAGCC
1 ATGGTCTTA-CATTTAAAATGCCATAACCCAGCT
* * * *** *
9463161 ATGGTCTTACGTTCAAAATGTCATAATTTAGTT
1 ATGGTCTTACATTTAAAATGCCATAACCCAGCT
* * *
9463194 ACGGTCTTTTCA-TTAAAATGCCATAGCCCAGCT
1 ATGGTC-TTACATTTAAAATGCCATAACCCAGCT
9463227 ATGGTCTTACATTTAAAA
1 ATGGTCTTACATTTAAAA
9463245 ATTTCCATGG
Statistics
Matches: 82, Mismatches: 31, Indels: 8
0.68 0.26 0.07
Matches are distributed among these distances:
32 5 0.06
33 72 0.88
34 5 0.06
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (33 bp):
ATGGTCTTACATTTAAAATGCCATAACCCAGCT
Found at i:9466700 original size:20 final size:21
Alignment explanation
Indices: 9466655--9466700 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
9466645 ATTTTAATAA
9466655 TAATTATATAAGAATGTTATT
1 TAATTATATAAGAATGTTATT
* * *
9466676 AAATTATAT-ATAATTTTATT
1 TAATTATATAAGAATGTTATT
9466696 TAATT
1 TAATT
9466701 GTATTTAATA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.52
Consensus pattern (21 bp):
TAATTATATAAGAATGTTATT
Found at i:9466734 original size:57 final size:59
Alignment explanation
Indices: 9466616--9466787 Score: 163
Period size: 61 Copynumber: 2.9 Consensus size: 59
9466606 TTTTTATAAC
* * * * * *
9466616 ATTATATATTATGATTTTTATT-AATTCATATTTTAATAATAATTATATAAGAATGTTATTAA
1 ATTAT-TATTATTAATTTTATTAAATT-ATA-TTTAATAATAATTTTTTAA-AATATGATTAA
* *
9466678 ATTA-TA-TA-TAATTTTATTTAATTGTATTTAATAATAATTGTTTTAAAATATGATTAA
1 ATTATTATTATTAATTTTATTAAATTATATTTAATAATAATT-TTTTAAAATATGATTAA
* *
9466735 GTTATTTATTATTATTTTTATTAAATTATATTTAATAATAATTTTATTAAAAT
1 ATTA-TTATTATTAATTTTATTAAATTATATTTAATAATAATTTT-TTAAAAT
9466788 TTAATAACAA
Statistics
Matches: 92, Mismatches: 11, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
57 25 0.27
58 14 0.15
59 8 0.09
60 6 0.07
61 35 0.38
62 4 0.04
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (59 bp):
ATTATTATTATTAATTTTATTAAATTATATTTAATAATAATTTTTTAAAATATGATTAA
Found at i:9481205 original size:104 final size:104
Alignment explanation
Indices: 9481025--9481248 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
9481015 TGTATATAAA
** * *
9481025 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
9481090 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
9481129 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
9481193 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
9481233 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
9481249 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:9481300 original size:71 final size:72
Alignment explanation
Indices: 9481167--9481318 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
9481157 TCATTGGTGG
* *
9481167 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
9481232 GAGGGGT
66 GAGGGGT
***
9481239 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
9481303 GAGGGGT
66 GAGGGGT
9481310 TGCTAAGTG
1 TGCTAAGTG
9481319 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:9484791 original size:43 final size:43
Alignment explanation
Indices: 9484520--9484803 Score: 202
Period size: 43 Copynumber: 6.6 Consensus size: 43
9484510 ATTTCTTAAT
* * ** * * *
9484520 GGCGTTTCTCACAAAAACACCGCTATAGAACATGACATTTAAC
1 GGCGTTTTTCCCAAAAATGCCGCTAAAGAACATGACCTTTAGC
* ** * *
9484563 GGCGTTTTTCCCACAAATGCTACTAAAGAACATGACCTATATC
1 GGCGTTTTTCCCAAAAATGCCGCTAAAGAACATGACCTTTAGC
* * *
9484606 GACGCTTTTCCCACAAATGCCGCTAAAGAACATGACCTTTAGC
1 GGCGTTTTTCCCAAAAATGCCGCTAAAGAACATGACCTTTAGC
* * *
9484649 TGTGC-TTTTCTCCTAAACA--CCGCTAAAGAACATGACCTTTAGT
1 -G-GCGTTTT-TCCCAAAAATGCCGCTAAAGAACATGACCTTTAGC
* * * * * *
9484692 TGCGCTTTTCCCCAAACA--CCGTTAAAGAATATTGACCTTTAGT
1 GGCG-TTTTTCCCAAAAATGCCGCTAAAGAACA-TGACCTTTAGC
* * ** *
9484735 AGCGCTTTT-CCAAAAATGCTTCTAAAGAACATGACATTTAGC
1 GGCGTTTTTCCCAAAAATGCCGCTAAAGAACATGACCTTTAGC
* *
9484777 GGTGTTTTTCCCAAAAACGCCGCTAAA
1 GGCGTTTTTCCCAAAAATGCCGCTAAA
9484804 AGTCATGTTC
Statistics
Matches: 188, Mismatches: 44, Indels: 18
0.75 0.18 0.07
Matches are distributed among these distances:
41 8 0.04
42 36 0.19
43 133 0.71
44 4 0.02
45 7 0.04
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.28
Consensus pattern (43 bp):
GGCGTTTTTCCCAAAAATGCCGCTAAAGAACATGACCTTTAGC
Found at i:9485491 original size:33 final size:33
Alignment explanation
Indices: 9485454--9485538 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
9485444 AGAAATAAAG
*
9485454 GGATTTGGGAAATTGGGAATTTTGATCAGAAAA
1 GGATTTGGGAAGTTGGGAATTTTGATCAGAAAA
*
9485487 GGATTTGGGAAGTTGAGG-ATTTTGATCAGAAAG
1 GGATTTGGGAAGTTG-GGAATTTTGATCAGAAAA
*
9485520 GGATTAGGGAAGTTGGGAA
1 GGATTTGGGAAGTTGGGAA
9485539 ATTGGGGAAG
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
32 2 0.04
33 43 0.91
34 2 0.04
ACGTcount: A:0.33, C:0.02, G:0.36, T:0.28
Consensus pattern (33 bp):
GGATTTGGGAAGTTGGGAATTTTGATCAGAAAA
Found at i:9486525 original size:54 final size:56
Alignment explanation
Indices: 9486421--9486532 Score: 158
Period size: 54 Copynumber: 2.0 Consensus size: 56
9486411 TTTTTATTTT
* * *
9486421 ATTTAAAATTGATCTTTTTAATTAATAATTTTTTATTTATATAAATAAAATAATAA
1 ATTTAAAATTGATCTTTTTAATTAATAATTATTTATTTATACAAACAAAATAATAA
*
9486477 ATTTAAAA-T-AT-TTTTTAATTAATAAATTATTTATTTATCCAAACAAAATAATAA
1 ATTTAAAATTGATCTTTTTAATTAAT-AATTATTTATTTATACAAACAAAATAATAA
9486531 AT
1 AT
9486533 ATGTAGTTAT
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
53 12 0.24
54 30 0.59
55 1 0.02
56 8 0.16
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.47
Consensus pattern (56 bp):
ATTTAAAATTGATCTTTTTAATTAATAATTATTTATTTATACAAACAAAATAATAA
Found at i:9487209 original size:18 final size:19
Alignment explanation
Indices: 9487186--9487225 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
9487176 CATAATGATA
9487186 TATATAATGTA-AT-TTTAT
1 TATATAAT-TACATATTTAT
9487204 TATATAATTACATATTTAT
1 TATATAATTACATATTTAT
9487223 TAT
1 TAT
9487226 TTTATTTCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 2 0.10
18 10 0.50
19 8 0.40
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.55
Consensus pattern (19 bp):
TATATAATTACATATTTAT
Found at i:9487230 original size:95 final size:100
Alignment explanation
Indices: 9487062--9487261 Score: 295
Period size: 95 Copynumber: 2.0 Consensus size: 100
9487052 TTTAAAATAT
9487062 AAAATATATTTAACATAATGATAAATATCACATATATAATTTTTCATTATATAATTACATATTTA
1 AAAATATATTTAACATAATGAT-AATATCACATATATAATTTTTCATTATATAATTACATATTTA
* *
9487127 TTGATTTATTTATATAGATAAAAGAGTTATTAATTA
65 TTGATTTATTTATATAAATAAAAAAGTTATTAATTA
* *
9487163 AAAATATATTTAACATAATGAT-ATAT-ATA-ATGTAA-TTTT-ATTATATAATTACATATTTAT
1 AAAATATATTTAACATAATGATAATATCACATATATAATTTTTCATTATATAATTACATATTTAT
*
9487223 T-ATTTTATTTCTATAAATAAAAAAGTTATTAATTA
66 TGA-TTTATTTATATAAATAAAAAAGTTATTAATTA
9487258 AAAA
1 AAAA
9487262 GATGAATTAA
Statistics
Matches: 93, Mismatches: 5, Indels: 8
0.88 0.05 0.08
Matches are distributed among these distances:
94 1 0.01
95 55 0.59
96 4 0.04
97 5 0.05
98 2 0.02
99 4 0.04
101 22 0.24
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (100 bp):
AAAATATATTTAACATAATGATAATATCACATATATAATTTTTCATTATATAATTACATATTTAT
TGATTTATTTATATAAATAAAAAAGTTATTAATTA
Found at i:9487434 original size:16 final size:15
Alignment explanation
Indices: 9487399--9487437 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
9487389 TATATTAAAG
9487399 AAAAACACATTTTTC
1 AAAAACACATTTTTC
9487414 AAAAATCAC-TTTTTC
1 AAAAA-CACATTTTTC
9487429 AAAAA-ACAT
1 AAAAACACAT
9487438 CCCTCTAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
13 2 0.09
14 1 0.05
15 16 0.73
16 3 0.14
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.31
Consensus pattern (15 bp):
AAAAACACATTTTTC
Found at i:9487751 original size:24 final size:24
Alignment explanation
Indices: 9487724--9487775 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
9487714 CAAAGTATAA
*
9487724 AGAGAGAAAAAAAAGTAGAATG-TT
1 AGAGAGAAAAAAAAG-AGAAAGATT
* *
9487748 AGAGAGTAATAAAAGAGAAAGATT
1 AGAGAGAAAAAAAAGAGAAAGATT
9487772 AGAG
1 AGAG
9487776 TGCAATTGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 5 0.21
24 19 0.79
ACGTcount: A:0.58, C:0.00, G:0.27, T:0.15
Consensus pattern (24 bp):
AGAGAGAAAAAAAAGAGAAAGATT
Found at i:9518069 original size:26 final size:26
Alignment explanation
Indices: 9518034--9518084 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
9518024 AATGTGAAAG
*
9518034 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
9518060 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
9518085 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:9518096 original size:103 final size:104
Alignment explanation
Indices: 9517956--9518178 Score: 369
Period size: 103 Copynumber: 2.2 Consensus size: 104
9517946 TGTATATAAA
** * *
9517956 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
9518020 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
9518059 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
9518124 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
9518163 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
9518179 GATATCCATT
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 90 0.80
104 22 0.20
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:9518230 original size:71 final size:72
Alignment explanation
Indices: 9518097--9518248 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
9518087 TCATTGGTGG
* *
9518097 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
9518162 GAGGGGT
66 GAGGGGT
***
9518169 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
9518233 GAGGGGT
66 GAGGGGT
9518240 TGCTAAGTG
1 TGCTAAGTG
9518249 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:9525237 original size:104 final size:104
Alignment explanation
Indices: 9525057--9525280 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
9525047 TGTATATAAA
** * *
9525057 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
9525122 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
9525161 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
9525225 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
9525265 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
9525281 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:9525332 original size:71 final size:72
Alignment explanation
Indices: 9525199--9525350 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
9525189 TCATTGGTGG
* *
9525199 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
9525264 GAGGGGT
66 GAGGGGT
***
9525271 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
9525335 GAGGGGT
66 GAGGGGT
9525342 TGCTAAGTG
1 TGCTAAGTG
9525351 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:9528823 original size:43 final size:43
Alignment explanation
Indices: 9528552--9528835 Score: 202
Period size: 43 Copynumber: 6.6 Consensus size: 43
9528542 ATTTCTTAAT
* * ** * * *
9528552 GGCGTTTCTCACAAAAACACCGCTATAGAACATGACATTTAAC
1 GGCGTTTTTCCCAAAAATGCCGCTAAAGAACATGACCTTTAGC
* ** * *
9528595 GGCGTTTTTCCCACAAATGCTACTAAAGAACATGACCTATATC
1 GGCGTTTTTCCCAAAAATGCCGCTAAAGAACATGACCTTTAGC
* * *
9528638 GACGCTTTTCCCACAAATGCCGCTAAAGAACATGACCTTTAGC
1 GGCGTTTTTCCCAAAAATGCCGCTAAAGAACATGACCTTTAGC
* * *
9528681 TGTGC-TTTTCTCCTAAACA--CCGCTAAAGAACATGACCTTTAGT
1 -G-GCGTTTT-TCCCAAAAATGCCGCTAAAGAACATGACCTTTAGC
* * * * * *
9528724 TGCGCTTTTCCCCAAACA--CCGTTAAAGAATATTGACCTTTAGT
1 GGCG-TTTTTCCCAAAAATGCCGCTAAAGAACA-TGACCTTTAGC
* * ** *
9528767 AGCGCTTTT-CCAAAAATGCTTCTAAAGAACATGACATTTAGC
1 GGCGTTTTTCCCAAAAATGCCGCTAAAGAACATGACCTTTAGC
* *
9528809 GGTGTTTTTCCCAAAAACGCCGCTAAA
1 GGCGTTTTTCCCAAAAATGCCGCTAAA
9528836 AGTCATGTTC
Statistics
Matches: 188, Mismatches: 44, Indels: 18
0.75 0.18 0.07
Matches are distributed among these distances:
41 8 0.04
42 36 0.19
43 133 0.71
44 4 0.02
45 7 0.04
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.28
Consensus pattern (43 bp):
GGCGTTTTTCCCAAAAATGCCGCTAAAGAACATGACCTTTAGC
Found at i:9529523 original size:33 final size:33
Alignment explanation
Indices: 9529486--9529570 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
9529476 AGAAATAAAG
*
9529486 GGATTTGGGAAATTGGGAATTTTGATCAGAAAA
1 GGATTTGGGAAGTTGGGAATTTTGATCAGAAAA
*
9529519 GGATTTGGGAAGTTGAGG-ATTTTGATCAGAAAG
1 GGATTTGGGAAGTTG-GGAATTTTGATCAGAAAA
*
9529552 GGATTAGGGAAGTTGGGAA
1 GGATTTGGGAAGTTGGGAA
9529571 ATTGGGGAAG
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
32 2 0.04
33 43 0.91
34 2 0.04
ACGTcount: A:0.33, C:0.02, G:0.36, T:0.28
Consensus pattern (33 bp):
GGATTTGGGAAGTTGGGAATTTTGATCAGAAAA
Found at i:9530556 original size:54 final size:55
Alignment explanation
Indices: 9530453--9530563 Score: 156
Period size: 54 Copynumber: 2.0 Consensus size: 55
9530443 TTTTTATTTT
* *
9530453 ATTTAAAATTGATCTTTTTAATTAATAATTTTTATTTATATAAATAAAATAATAA
1 ATTTAAAATTGATCTTTTTAATTAATAATTTTTATTTATACAAACAAAATAATAA
*
9530508 ATTTAAAA-T-AT-TTTTTAATTAATAAATTATTTATTTATCCAAACAAAATAATAA
1 ATTTAAAATTGATCTTTTTAATTAAT-AATT-TTTATTTATACAAACAAAATAATAA
9530562 AT
1 AT
9530564 ATGTAGTTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
52 12 0.24
53 6 0.12
54 25 0.49
55 8 0.16
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.47
Consensus pattern (55 bp):
ATTTAAAATTGATCTTTTTAATTAATAATTTTTATTTATACAAACAAAATAATAA
Done.