Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 40 of 240
Found at i:14040356 original size:78 final size:78
Alignment explanation
Indices: 14040270--14040419 Score: 255
Period size: 78 Copynumber: 1.9 Consensus size: 78
14040260 AATCATATAT
*
14040270 TCTAAGATTGCATATCATATCTAAGATTATATATAATATCTAAGATTGCATATCATATCTAAGAT
1 TCTAAGATTGCATATCATATCTAAGATTACATATAATATCTAAGATTGCATATCATATCTAAGAT
14040335 TGCATATATCATA
66 TGCATATATCATA
* * * *
14040348 TCTAAGATTGCATATCATATCTAGGATTGCATATCATATCTAGGATTGCATATCATATCTAAGAT
1 TCTAAGATTGCATATCATATCTAAGATTACATATAATATCTAAGATTGCATATCATATCTAAGAT
14040413 TGCATAT
66 TGCATAT
14040420 CCTCAAAAAT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
78 67 1.00
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (78 bp):
TCTAAGATTGCATATCATATCTAAGATTACATATAATATCTAAGATTGCATATCATATCTAAGAT
TGCATATATCATA
Found at i:14054298 original size:125 final size:126
Alignment explanation
Indices: 14053978--14054316 Score: 626
Period size: 125 Copynumber: 2.7 Consensus size: 126
14053968 CGTCTCTGGT
* *
14053978 CAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
1 CAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
*
14054043 TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTTTCTGATTTTTCTGAG
66 TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTTTCTGATGTTTCTGAG
14054104 CAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
1 CAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
*
14054169 TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAAT-ATTTTTTTTTTGATGTTTCTGAG
66 TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTTTCTGATGTTTCTGAG
*
14054229 CAAATAGTACAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
1 CAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
14054294 TGGACGCGATTTTGCTACAGTAG
66 TGGACGCGATTTTGCTACAGTAG
14054317 CAAGTTTGGG
Statistics
Matches: 208, Mismatches: 5, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
125 108 0.52
126 100 0.48
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (126 bp):
CAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTTTCTGATGTTTCTGAG
Found at i:14057443 original size:10 final size:10
Alignment explanation
Indices: 14057428--14057452 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14057418 CAGATCTAAC
14057428 ATTATGTAAA
1 ATTATGTAAA
14057438 ATTATGTAAA
1 ATTATGTAAA
14057448 ATTAT
1 ATTAT
14057453 TAAGCCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (10 bp):
ATTATGTAAA
Found at i:14057576 original size:55 final size:55
Alignment explanation
Indices: 14057435--14057576 Score: 146
Period size: 55 Copynumber: 2.5 Consensus size: 55
14057425 AACATTATGT
* *
14057435 AAAATTATGTAAAATTATTAAGCCAAAAAAAATTTCTTAATTGTTAGTAAAATTTATC
1 AAAA-TATGTAAAATTATTAAGCC--AAAAAATTTCTTAATGGTTAGTAAAATGTATC
* * * * *
14057493 -AAATAATCTCAAATTATTAAGTCC-AAAAATTGTGTTAATGGTTATTAAAGTGT-TC
1 AAAAT-ATGTAAAATTATTAAG-CCAAAAAATT-TCTTAATGGTTAGTAAAATGTATC
14057548 AAAATATGTAAAATTATTAAGCCAAAAAA
1 AAAATATGTAAAATTATTAAGCCAAAAAA
14057577 ATATGTAAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
54 2 0.03
55 28 0.40
56 21 0.30
57 17 0.24
58 2 0.03
ACGTcount: A:0.48, C:0.08, G:0.09, T:0.35
Consensus pattern (55 bp):
AAAATATGTAAAATTATTAAGCCAAAAAATTTCTTAATGGTTAGTAAAATGTATC
Found at i:14057581 original size:26 final size:26
Alignment explanation
Indices: 14057548--14057628 Score: 144
Period size: 26 Copynumber: 3.1 Consensus size: 26
14057538 TAAAGTGTTC
14057548 AAAATATGTAAAATTATTAAGCCAAA
1 AAAATATGTAAAATTATTAAGCCAAA
*
14057574 AAAATATGTAAAATTATTAAACCAAA
1 AAAATATGTAAAATTATTAAGCCAAA
*
14057600 AAAATATGTAAAATTATTAAGTCAAA
1 AAAATATGTAAAATTATTAAGCCAAA
14057626 AAA
1 AAA
14057629 TTTAGGTTAG
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.27
Consensus pattern (26 bp):
AAAATATGTAAAATTATTAAGCCAAA
Found at i:14057719 original size:24 final size:24
Alignment explanation
Indices: 14057691--14057779 Score: 70
Period size: 29 Copynumber: 3.3 Consensus size: 24
14057681 TTAATTTAGG
14057691 TTAGGTTTAGGGTTTTTTGTTAAT
1 TTAGGTTTAGGGTTTTTTGTTAAT
**
14057715 TTAGGTTAGATTTAGGGTTTTTAATTAATTT
1 TTA-G---G-TTTAGGGTTTTTTGTTAA--T
14057746 AGGTTAGGTTTAGGGTTTTTTGTTAAT
1 ---TTAGGTTTAGGGTTTTTTGTTAAT
14057773 TTAGGTT
1 TTAGGTT
14057780 AGGTTTAGGG
Statistics
Matches: 51, Mismatches: 4, Indels: 20
0.68 0.05 0.27
Matches are distributed among these distances:
24 10 0.20
25 1 0.02
27 1 0.02
28 1 0.02
29 32 0.63
30 1 0.02
31 1 0.02
33 1 0.02
34 3 0.06
ACGTcount: A:0.20, C:0.00, G:0.25, T:0.55
Consensus pattern (24 bp):
TTAGGTTTAGGGTTTTTTGTTAAT
Found at i:14057729 original size:11 final size:10
Alignment explanation
Indices: 14057627--14058608 Score: 151
Period size: 9 Copynumber: 104.1 Consensus size: 10
14057617 TAAGTCAAAA
14057627 AATTTAGGTT
1 AATTTAGGTT
*
14057637 AGTTTAGGGTT
1 AATTTA-GGTT
14057648 --TTTA-GTT
1 AATTTAGGTT
*
14057655 AATTTAGCTT
1 AATTTAGGTT
14057665 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
14057676 --TTTA-ATT
1 AATTTAGGTT
14057683 AATTTAGGTT
1 AATTTAGGTT
*
14057693 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
14057705 --TTT-TGTT
1 AATTTAGGTT
14057712 AATTTAGGTT
1 AATTTAGGTT
14057722 AGATTTAGGGTT
1 A-ATTTA-GGTT
*
14057734 --TTTA-ATT
1 AATTTAGGTT
14057741 AATTTAGGTT
1 AATTTAGGTT
*
14057751 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
14057763 --TTT-TGTT
1 AATTTAGGTT
14057770 AATTTAGGTT
1 AATTTAGGTT
*
14057780 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
14057792 --TTTA-ATT
1 AATTTAGGTT
*
14057799 AATTTAAGTT
1 AATTTAGGTT
14057809 AGA-TTAGGATT
1 A-ATTTAGG-TT
*
14057820 --TTTA-ATT
1 AATTTAGGTT
14057827 AATTTAGGTT
1 AATTTAGGTT
14057837 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
14057848 --TTTA-ATT
1 AATTTAGGTT
14057855 AATTTAGGTT
1 AATTTAGGTT
14057865 AGA-TTAGGGTT
1 A-ATTTA-GGTT
14057876 --TTTA-GTT
1 AATTTAGGTT
*
14057883 AATTTAAGTT
1 AATTTAGGTT
14057893 AATTTAGGTT
1 AATTTAGGTT
14057903 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
14057914 --TTTA-ATT
1 AATTTAGGTT
14057921 AATTTAGGTT
1 AATTTAGGTT
14057931 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
14057942 --TTTA-ATT
1 AATTTAGGTT
14057949 AATTTAGGTT
1 AATTTAGGTT
14057959 AGA-TTAGGGTT
1 A-ATTTA-GGTT
14057970 --TTTA-GTT
1 AATTTAGGTT
14057977 AATTTAGGTT
1 AATTTAGGTT
14057987 AGA-TTAGGGTT
1 A-ATTTA-GGTT
14057998 --TTTA-GTT
1 AATTTAGGTT
14058005 AATTTAGGTT
1 AATTTAGGTT
14058015 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
14058026 --TTTA-ATT
1 AATTTAGGTT
14058033 AATTTAGGTT
1 AATTTAGGTT
14058043 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
14058054 --TTTA-ATT
1 AATTTAGGTT
14058061 AATTTAGGTT
1 AATTTAGGTT
*
14058071 AGGTTTAGGGTT
1 A-ATTTA-GGTT
14058083 --TTTA-GTT
1 AATTTAGGTT
14058090 AATTTAGGTT
1 AATTTAGGTT
14058100 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
14058111 --TTTA-ATT
1 AATTTAGGTT
14058118 AATTTAGGTT
1 AATTTAGGTT
14058128 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
14058139 --TTTA-ATT
1 AATTTAGGTT
*
14058146 AATTTAGATT
1 AATTTAGGTT
14058156 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
14058167 --TTTA-ATT
1 AATTTAGGTT
14058174 AATTTAGGTT
1 AATTTAGGTT
*
14058184 AGGTTTAGGGTT
1 A-ATTTA-GGTT
14058196 --TTTA-GTT
1 AATTTAGGTT
14058203 AATTTAGGTT
1 AATTTAGGTT
14058213 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
14058224 --TTTA-ATT
1 AATTTAGGTT
14058231 AATTTAGGTT
1 AATTTAGGTT
*
14058241 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
14058253 --TTTA-ATT
1 AATTTAGGTT
14058260 AATTTAGGTT
1 AATTTAGGTT
*
14058270 AGA-TTATGGCT
1 A-ATTTA-GGTT
*
14058281 --TTTA-ATT
1 AATTTAGGTT
14058288 AATTTAGGTT
1 AATTTAGGTT
*
14058298 AAATTAGGGTT
1 AATTTA-GGTT
14058309 --TTTA-GTT
1 AATTTAGGTT
14058316 AATTTAGGTT
1 AATTTAGGTT
14058326 AGA-TTAGGGTT
1 A-ATTTA-GGTT
14058337 --TTTA-GTT
1 AATTTAGGTT
14058344 AATTTAGGTT
1 AATTTAGGTT
14058354 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
14058365 --TTTA-ATT
1 AATTTAGGTT
14058372 AATTTAGGTT
1 AATTTAGGTT
14058382 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
14058393 --TTTA-ATT
1 AATTTAGGTT
14058400 AATTTAGGTT
1 AATTTAGGTT
*
14058410 AGGTTTAGGGTT
1 A-ATTTA-GGTT
14058422 --TTTA-GTT
1 AATTTAGGTT
14058429 AATTTAGGTT
1 AATTTAGGTT
14058439 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
14058450 --TTTA-ATT
1 AATTTAGGTT
14058457 AATTTAGGTT
1 AATTTAGGTT
*
14058467 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
14058479 --TTTA-ATT
1 AATTTAGGTT
14058486 AATTTAGGTT
1 AATTTAGGTT
*
14058496 AGA-TTATGGCT
1 A-ATTTA-GGTT
*
14058507 --TTTA-ATT
1 AATTTAGGTT
14058514 AATTTAGGTT
1 AATTTAGGTT
*
14058524 AAATTAGGGTT
1 AATTTA-GGTT
14058535 --TTTA-GTT
1 AATTTAGGTT
14058542 AATTTAGGTT
1 AATTTAGGTT
14058552 AGA-TTAGGGTT
1 A-ATTTA-GGTT
14058563 --TTTA-GTT
1 AATTTAGGTT
14058570 AATTTAGGTT
1 AATTTAGGTT
14058580 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
14058591 --TTTA-ATT
1 AATTTAGGTT
14058598 AATTTAGGTT
1 AATTTAGGTT
14058608 A
1 A
14058609 GATTAGGGTT
Statistics
Matches: 716, Mismatches: 67, Indels: 378
0.62 0.06 0.33
Matches are distributed among these distances:
7 79 0.11
9 244 0.34
10 204 0.28
11 153 0.21
12 36 0.05
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (10 bp):
AATTTAGGTT
Found at i:14057938 original size:38 final size:38
Alignment explanation
Indices: 14057848--14057931 Score: 143
Period size: 38 Copynumber: 2.2 Consensus size: 38
14057838 GATTAGGGTT
*
14057848 TTTAA-TTAATTTAGGTTAGATTAGGGTTTTTAGTTAA
1 TTTAAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAA
14057885 TTTAAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAA
1 TTTAAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAA
*
14057923 TTTAGGTTA
1 TTTAAGTTA
14057932 GATTAGGGTT
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
37 5 0.11
38 39 0.89
ACGTcount: A:0.30, C:0.00, G:0.19, T:0.51
Consensus pattern (38 bp):
TTTAAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAA
Found at i:14058315 original size:226 final size:226
Alignment explanation
Indices: 14057627--14058779 Score: 1853
Period size: 226 Copynumber: 5.1 Consensus size: 226
14057617 TAAGTCAAAA
* *
14057627 AATTTAGGTTAGTTTAGGGTTTTTAGTTAATTTAGCTTAGATTAGGGTTTTTAATTAATTTAGGT
1 AATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGT
* ** * * *
14057692 TAGGTTTAGGGTTTTTTGTTAATTTAGGTTAGATTTAGGGTTTTTAATTAATTTAGGTTAGGTTT
66 TA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTA-GATT
** * *
14057757 AGGGTTTTTTGTTAATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAAGTTAGATTAGGATTTT
129 AGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTT
*
14057822 TAATTAATTTAGGTTAGATTAGGGTTTTTAATT
194 TAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
14057855 AATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAAGTTAATTTAGGTTAGATTAGGGTTTTTAAT
1 AATTTAGGTTAGATTA-GG------GTT--TTT-AGTTAATTTAGGTTAGATTAGGGTTTTTAAT
*
14057920 TAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTTAGTTAATTTAG
56 TAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAG
* *
14057984 GTTAGATTAGGGTTTTTAGTTAATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGATT
121 GTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATT
*
14058048 AGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
186 AGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTTAGTT
* *
14058090 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGAT
1 AATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGT
14058155 TAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTAGATTAG
66 TAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTAGATTAG
* *
14058220 GGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTATGGCTTTTA
131 GGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTA
*
14058285 ATTAATTTAGGTTAAATTAGGGTTTTTAGTT
196 ATTAATTTAGGTTAGATTAGGGTTTTTAGTT
14058316 AATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGT
1 AATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGT
14058381 TAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTAGATTAG
66 TAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTAGATTAG
* *
14058446 GGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTATGGCTTTTA
131 GGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTA
*
14058511 ATTAATTTAGGTTAAATTAGGGTTTTTAGTT
196 ATTAATTTAGGTTAGATTAGGGTTTTTAGTT
14058542 AATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGT
1 AATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGT
* * *
14058607 TAGATTAGGGTTTTTAATTAATTTAAGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGATTAG
66 TAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTAGATTAG
* *
14058671 GGTTTTTAATTAAATTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTA
131 GGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTA
* * * *
14058736 ATTAATTTAGGCTAGGTTTAAGGTTTTTAATT
196 ATTAATTTAGGTTA-GATTAGGGTTTTTAGTT
14058768 AATTTAGGTTAG
1 AATTTAGGTTAG
14058780 GGTTAGGTTA
Statistics
Matches: 873, Mismatches: 38, Indels: 30
0.93 0.04 0.03
Matches are distributed among these distances:
225 175 0.20
226 415 0.48
227 53 0.06
228 18 0.02
229 2 0.00
234 55 0.06
235 60 0.07
236 25 0.03
237 28 0.03
238 42 0.05
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.50
Consensus pattern (226 bp):
AATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGT
TAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTAGATTAG
GGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTA
ATTAATTTAGGTTAGATTAGGGTTTTTAGTT
Found at i:14058788 original size:28 final size:28
Alignment explanation
Indices: 14057627--14058779 Score: 1639
Period size: 28 Copynumber: 40.4 Consensus size: 28
14057617 TAAGTCAAAA
* *
14057627 AATTTAGGTTAGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14057655 AATTTAGCTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* **
14057683 AATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
14057712 AATTTAGGTTAGATTTAGGGTTTTTAATT
1 AATTTAGGTTAGA-TTAGGGTTTTTAATT
* **
14057741 AATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
*
14057770 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
* *
14057799 AATTTAAGTTAGATTAGGATTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
14057827 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14057855 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14057883 AATTTAAGTTA-ATTTAGGTTAGATTAGGGTTT--TT
1 AATTTAGGTTAGA-TTAGG---G-TT----TTTAATT
** * *
14057917 AA-TTAATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAG----GGTTT-TTAATT
*
14057949 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14057977 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
14058005 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
14058033 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
14058061 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
14058090 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
14058118 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14058146 AATTTAGATTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
14058174 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
14058203 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14058231 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
* *
14058260 AATTTAGGTTAGATTATGGCTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
14058288 AATTTAGGTTAAATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14058316 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
14058344 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
14058372 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
14058400 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
14058429 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14058457 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
* *
14058486 AATTTAGGTTAGATTATGGCTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
14058514 AATTTAGGTTAAATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14058542 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
14058570 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
14058598 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14058626 AATTTAAGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
14058654 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* * *
14058682 AAATTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
14058711 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* * *
14058739 AATTTAGGCTAGGTTTAAGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
14058768 AATTTAGGTTAG
1 AATTTAGGTTAG
14058780 GGTTAGGTTA
Statistics
Matches: 1020, Mismatches: 77, Indels: 56
0.88 0.07 0.05
Matches are distributed among these distances:
27 1 0.00
28 691 0.68
29 286 0.28
30 3 0.00
31 1 0.00
32 6 0.01
33 23 0.02
34 5 0.00
36 3 0.00
37 1 0.00
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.50
Consensus pattern (28 bp):
AATTTAGGTTAGATTAGGGTTTTTAATT
Found at i:14059048 original size:24 final size:24
Alignment explanation
Indices: 14059016--14059071 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
14059006 GGCGGCGATT
*
14059016 GTTCTTCCTCCGATGGTGATTGTG
1 GTTCTTCCTCCGATGATGATTGTG
* *
14059040 GTTCTTCCTCCGGTGATGGTTGTG
1 GTTCTTCCTCCGATGATGATTGTG
14059064 GTTCTTCC
1 GTTCTTCC
14059072 GGTTCGGCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.05, C:0.23, G:0.29, T:0.43
Consensus pattern (24 bp):
GTTCTTCCTCCGATGATGATTGTG
Found at i:14061158 original size:29 final size:29
Alignment explanation
Indices: 14061116--14061178 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 29
14061106 GCCATTGATG
* *
14061116 AAAATATAAAAAAATTTAAAATTATTTTA
1 AAAAAATAAAAAAAATTAAAATTATTTTA
* *
14061145 AAAAAATATAAAAAATTATAATTATTTTA
1 AAAAAATAAAAAAAATTAAAATTATTTTA
14061174 AAAAA
1 AAAAA
14061179 TGGATTTGAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (29 bp):
AAAAAATAAAAAAAATTAAAATTATTTTA
Found at i:14061249 original size:22 final size:22
Alignment explanation
Indices: 14061224--14061274 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
14061214 AAATATGGGT
* *
14061224 TTGAGAGAATTTTGGAATGAAA
1 TTGAGAGAAATTTGGAAGGAAA
14061246 TTGAGAGAAATTTGGAAGGAAA
1 TTGAGAGAAATTTGGAAGGAAA
14061268 TTGAGAG
1 TTGAGAG
14061275 GATTAGAGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.41, C:0.00, G:0.31, T:0.27
Consensus pattern (22 bp):
TTGAGAGAAATTTGGAAGGAAA
Found at i:14068322 original size:28 final size:28
Alignment explanation
Indices: 14068280--14068337 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
14068270 CTAGACTATC
14068280 TGTTGCTTGGATAGTCATCTCAGGAGGA
1 TGTTGCTTGGATAGTCATCTCAGGAGGA
* *
14068308 TGTTGCTTGGTTAGTCATCTCGGGAGGA
1 TGTTGCTTGGATAGTCATCTCAGGAGGA
14068336 TG
1 TG
14068338 AGCTCACAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.17, C:0.14, G:0.34, T:0.34
Consensus pattern (28 bp):
TGTTGCTTGGATAGTCATCTCAGGAGGA
Found at i:14070103 original size:125 final size:125
Alignment explanation
Indices: 14069877--14070129 Score: 407
Period size: 125 Copynumber: 2.0 Consensus size: 125
14069867 TTAGGGTTTT
* * * *
14069877 TAGGTCCTGGAAGAAATAATTTTGAGTTGACGTTTCTGATCAAATAGTATAAAATTGCTTCTAGC
1 TAGGTCATGGAAGAAATAATTTTGAGTTGACGTTTCTGAGCAAATAATATAAAATTGCTTCTAAC
* *
14069942 AGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTAGACGCGCTTTTGCTACAG
66 AGGATGCTATTTGAGAAGAATTTGTAAAATCACGCCCTCGTAGACGCGCTTTTGCTACAG
*** *
14070002 TAGGTCATGGAAGAAATAATTTTTTTTTTACGTTTCTGAGCAAATAATATAAAATTGCTTCTAAC
1 TAGGTCATGGAAGAAATAATTTTGAGTTGACGTTTCTGAGCAAATAATATAAAATTGCTTCTAAC
*
14070067 AGGATGCTATTTGAGAAGAATTTGTAAAATCACGCCCTCGTGGACGCGCTTTTGCTACAG
66 AGGATGCTATTTGAGAAGAATTTGTAAAATCACGCCCTCGTAGACGCGCTTTTGCTACAG
14070127 TAG
1 TAG
14070130 CATGTTTAGG
Statistics
Matches: 117, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
125 117 1.00
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.33
Consensus pattern (125 bp):
TAGGTCATGGAAGAAATAATTTTGAGTTGACGTTTCTGAGCAAATAATATAAAATTGCTTCTAAC
AGGATGCTATTTGAGAAGAATTTGTAAAATCACGCCCTCGTAGACGCGCTTTTGCTACAG
Found at i:14071035 original size:24 final size:24
Alignment explanation
Indices: 14071001--14071056 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
14070991 CTGAAATGAG
14071001 TTCAGATGAAGAAGAAAATCCACGA
1 TTCAGA-GAAGAAGAAAATCCACGA
*
14071026 TTCAGAGAAGAAGAAAATTCACGA
1 TTCAGAGAAGAAGAAAATCCACGA
*
14071050 TTTAGAG
1 TTCAGAG
14071057 CATACTCACC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
24 23 0.79
25 6 0.21
ACGTcount: A:0.46, C:0.12, G:0.21, T:0.20
Consensus pattern (24 bp):
TTCAGAGAAGAAGAAAATCCACGA
Found at i:14072444 original size:18 final size:18
Alignment explanation
Indices: 14072421--14072458 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
14072411 TATGACGTCG
14072421 AACCTGGCTGAATGCATA
1 AACCTGGCTGAATGCATA
14072439 AACCTGGCTGAATGCATA
1 AACCTGGCTGAATGCATA
14072457 AA
1 AA
14072459 TTCTGTTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (18 bp):
AACCTGGCTGAATGCATA
Found at i:14073433 original size:23 final size:23
Alignment explanation
Indices: 14073377--14073842 Score: 447
Period size: 23 Copynumber: 20.9 Consensus size: 23
14073367 GAATGTTAAG
14073377 GGTTAGGGTTTTTAAG-T--TTA
1 GGTTAGGGTTTTTAAGTTAATTA
* *
14073397 GGGTTAGGATTTTTAATTTAATTA
1 -GGTTAGGGTTTTTAAGTTAATTA
* *
14073421 GGTTAGGGGTTTTAAGTTAA--G
1 GGTTAGGGTTTTTAAGTTAATTA
14073442 GGTTAGGGTTTTTAAGTTAATTA
1 GGTTAGGGTTTTTAAGTTAATTA
*
14073465 GGTTAGGG-TTTTAACTTAA--A
1 GGTTAGGGTTTTTAAGTTAATTA
* *
14073485 GGTTAGGGTTTTAAATTTAATTA
1 GGTTAGGGTTTTTAAGTTAATTA
* *
14073508 GTTTAGGGTTTTTAATTTAATTA
1 GGTTAGGGTTTTTAAGTTAATTA
* *
14073531 GGTTAGAGTTTTTAAGTTAA--G
1 GGTTAGGGTTTTTAAGTTAATTA
*
14073552 GGTTTAGGGTTTTTAAGTTAA--G
1 GG-TTAGGGTTTTTAAGTTAATTA
*
14073574 GGTTTAGGGTTTCTAAGTTAATTA
1 GG-TTAGGGTTTTTAAGTTAATTA
* * *
14073598 GGCTAAGGTTTTTAATTTAATTA
1 GGTTAGGGTTTTTAAGTTAATTA
* *
14073621 GGTTAGAGTTTTTAAGTTAA--G
1 GGTTAGGGTTTTTAAGTTAATTA
*
14073642 GGTTTAGGG-TTTTAAATTAAATTA
1 GG-TTAGGGTTTTTAAGTT-AATTA
*
14073666 GGTTAGGGTTTTTAATTTAATTA
1 GGTTAGGGTTTTTAAGTTAATTA
*
14073689 GGTTAGGGTTTTTAAGTTAA--G
1 GGTTAGGGTTTTTAAGTTAATTA
14073710 GGTTTAGGGTTTTTAA-TTAAATTA
1 GG-TTAGGGTTTTTAAGTT-AATTA
*
14073734 GGTTAGGGTTTTTAAGTTAA--G
1 GGTTAGGGTTTTTAAGTTAATTA
* *
14073755 GGTTAGGATTTTTAATTTAATTA
1 GGTTAGGGTTTTTAAGTTAATTA
*
14073778 GGTTAGGGTTTTTAAGTTAA--G
1 GGTTAGGGTTTTTAAGTTAATTA
*
14073799 GGTTTAAGGTTTTTAA-TTAAATTA
1 GG-TTAGGGTTTTTAAGTT-AATTA
*
14073823 GGTTAGAGTTTTTAAGTTAA
1 GGTTAGGGTTTTTAAGTTAA
14073843 GGGTATTAAT
Statistics
Matches: 370, Mismatches: 47, Indels: 54
0.79 0.10 0.11
Matches are distributed among these distances:
20 9 0.02
21 80 0.22
22 85 0.23
23 173 0.47
24 23 0.06
ACGTcount: A:0.27, C:0.01, G:0.25, T:0.47
Consensus pattern (23 bp):
GGTTAGGGTTTTTAAGTTAATTA
Found at i:14073652 original size:68 final size:68
Alignment explanation
Indices: 14073371--14073846 Score: 513
Period size: 68 Copynumber: 7.1 Consensus size: 68
14073361 TTATGTGAAT
*
14073371 GTTAAGGG-TTAGGGTTTTTAAG-T--TTAGGGTT-AGGATTTTTAATTTAATTAGGTTAGGGGT
1 GTTAAGGGTTTAGGGTTTTTAAGTTAATTA-GGTTAAGG-TTTTTAATTTAATTAGGTTAGGGTT
14073431 TTTAA
64 TTTAA
* *
14073436 GTTAAGGG-TTAGGGTTTTTAAGTTAATTAGGTT-AGGGTTTTAACTTAA--AGGTTAGGGTTTT
1 GTTAAGGGTTTAGGGTTTTTAAGTTAATTAGGTTAAGGTTTTTAATTTAATTAGGTTAGGGTTTT
*
14073497 AAA
66 TAA
* ** * * *
14073500 TTTAATTAGTTTAGGGTTTTTAATTTAATTAGGTT-AGAGTTTTTAAGTTAA--GGGTTTAGGGT
1 GTTAA-GGGTTTAGGGTTTTTAAGTTAATTAGGTTAAG-GTTTTTAATTTAATTAGG-TTAGGGT
14073562 TTTTAA
63 TTTTAA
* * *
14073568 GTTAAGGGTTTAGGGTTTCTAAGTTAATTAGGCTAAGGTTTTTAATTTAATTAGGTTAGAGTTTT
1 GTTAAGGGTTTAGGGTTTTTAAGTTAATTAGGTTAAGGTTTTTAATTTAATTAGGTTAGGGTTTT
14073633 TAA
66 TAA
* *
14073636 GTTAAGGGTTTAGGG-TTTTAAATTAAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTT
1 GTTAAGGGTTTAGGGTTTTTAAGTT-AATTAGGTTAAGGTTTTTAATTTAATTAGGTTAGGGTTT
14073700 TTAA
65 TTAA
* * * *
14073704 GTTAAGGGTTTAGGGTTTTTAA-TTAAATTAGGTTAGGGTTTTTAAGTTAA--GGGTTAGGATTT
1 GTTAAGGGTTTAGGGTTTTTAAGTT-AATTAGGTTAAGGTTTTTAATTTAATTAGGTTAGGGTTT
14073766 TTAA
65 TTAA
* * * * *
14073770 TTTAATTAGG-TTAGGGTTTTTAAGTTAA--GGGTTTAAGGTTTTTAATTAAATTAGGTTAGAGT
1 GTTAA--GGGTTTAGGGTTTTTAAGTTAATTAGG-TTAAGGTTTTTAATTTAATTAGGTTAGGGT
14073832 TTTTAA
63 TTTTAA
14073838 GTTAAGGGT
1 GTTAAGGGT
14073847 ATTAATGGTT
Statistics
Matches: 352, Mismatches: 40, Indels: 36
0.82 0.09 0.08
Matches are distributed among these distances:
64 18 0.05
65 25 0.07
66 72 0.20
67 78 0.22
68 151 0.43
69 8 0.02
ACGTcount: A:0.27, C:0.01, G:0.26, T:0.46
Consensus pattern (68 bp):
GTTAAGGGTTTAGGGTTTTTAAGTTAATTAGGTTAAGGTTTTTAATTTAATTAGGTTAGGGTTTT
TAA
Found at i:14073717 original size:45 final size:44
Alignment explanation
Indices: 14073377--14073846 Score: 529
Period size: 45 Copynumber: 10.5 Consensus size: 44
14073367 GAATGTTAAG
* *
14073377 GGTTAGGGTTTTTAAGTTTAGGGTTAGGATTTTTAATTTAATTA
1 GGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAATTA
* *
14073421 GGTTAGGGGTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAATTA
1 GGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAATTA
* * *
14073465 GGTTAGGG-TTTTAACTTAAAGGTTAGGGTTTTAAATTTAATTA
1 GGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAATTA
* * * * * *
14073508 GTTTAGGGTTTTTAATTTAATTAGGTTAGAGTTTTTAAGTTAA--G
1 GGTTAGGGTTTTTAAGTTAA--GGGTTAGGGTTTTTAATTTAATTA
* *
14073552 GGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTCTAAGTTAATTA
1 GG-TTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAATTTAATTA
* * * * * * *
14073598 GGCTAAGGTTTTTAATTTAATTAGGTTAGAGTTTTTAAGTTAA--G
1 GGTTAGGGTTTTTAAGTTAA--GGGTTAGGGTTTTTAATTTAATTA
* *
14073642 GGTTTAGGG-TTTTAAATTAAATTAGGTTAGGGTTTTTAATTTAATTA
1 GG-TTAGGGTTTTTAAGTT-AA--GGGTTAGGGTTTTTAATTTAATTA
*
14073689 GGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAATTTAATTA
*
14073734 GGTTAGGGTTTTTAAGTTAAGGGTTAGGATTTTTAATTTAATTA
1 GGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAATTA
* *
14073778 GGTTAGGGTTTTTAAGTTAAGGGTTTAAGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAATTTAATTA
*
14073823 GGTTAGAGTTTTTAAGTTAAGGGT
1 GGTTAGGGTTTTTAAGTTAAGGGT
14073847 ATTAATGGTT
Statistics
Matches: 368, Mismatches: 42, Indels: 32
0.83 0.10 0.07
Matches are distributed among these distances:
43 40 0.11
44 130 0.35
45 142 0.39
46 44 0.12
47 12 0.03
ACGTcount: A:0.27, C:0.01, G:0.26, T:0.47
Consensus pattern (44 bp):
GGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAATTA
Found at i:14073932 original size:25 final size:25
Alignment explanation
Indices: 14073903--14074021 Score: 104
Period size: 25 Copynumber: 5.0 Consensus size: 25
14073893 ATTCAAAAAT
14073903 TTCTATTTTATTACATCAAATAAAC
1 TTCTATTTTATTACATCAAATAAAC
*
14073928 TTCTATTTTATTATATCAAAT-AAC
1 TTCTATTTTATTACATCAAATAAAC
* ** * * * ***
14073952 ATC-A--AAATAACTTTAAA-ATTT
1 TTCTATTTTATTACATCAAATAAAC
14073973 TTCTATTTTATTACATCAAATAAAC
1 TTCTATTTTATTACATCAAATAAAC
*
14073998 TTCTATTTTATTACGTCAAATAAA
1 TTCTATTTTATTACATCAAATAAA
14074022 ATCAAAATAT
Statistics
Matches: 68, Mismatches: 21, Indels: 10
0.69 0.21 0.10
Matches are distributed among these distances:
21 9 0.13
22 1 0.01
23 1 0.01
24 13 0.19
25 44 0.65
ACGTcount: A:0.41, C:0.13, G:0.01, T:0.45
Consensus pattern (25 bp):
TTCTATTTTATTACATCAAATAAAC
Found at i:14073954 original size:35 final size:35
Alignment explanation
Indices: 14073915--14074027 Score: 97
Period size: 35 Copynumber: 3.2 Consensus size: 35
14073905 CTATTTTATT
14073915 ACATCAAATAAACTTCTATTTTATTATATCAAATA
1 ACATCAAATAAACTTCTATTTTATTATATCAAATA
* * *** *
14073950 ACATCAAA-ATAACTT-TAAAATTT-TTCTATTTTATT
1 ACATCAAATA-AACTTCT--ATTTTATTATATCAAATA
**
14073985 ACATCAAATAAACTTCTATTTTATTACGTCAAATA
1 ACATCAAATAAACTTCTATTTTATTATATCAAATA
*
14074020 AAATCAAA
1 ACATCAAA
14074028 ATATTCAAAA
Statistics
Matches: 57, Mismatches: 15, Indels: 12
0.68 0.18 0.14
Matches are distributed among these distances:
34 6 0.11
35 45 0.79
36 6 0.11
ACGTcount: A:0.45, C:0.14, G:0.01, T:0.40
Consensus pattern (35 bp):
ACATCAAATAAACTTCTATTTTATTATATCAAATA
Found at i:14074187 original size:21 final size:21
Alignment explanation
Indices: 14074147--14074193 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
14074137 TTCTCTAACT
* *
14074147 TCCGGCGGCGATTGTTGTTCC
1 TCCGGCGGCGATTCTGGTTCC
* *
14074168 TCCGGCGGGGATTCTGGTTCT
1 TCCGGCGGCGATTCTGGTTCC
14074189 TCCGG
1 TCCGG
14074194 TACGGTATCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.04, C:0.28, G:0.36, T:0.32
Consensus pattern (21 bp):
TCCGGCGGCGATTCTGGTTCC
Found at i:14083861 original size:3 final size:3
Alignment explanation
Indices: 14083853--14083882 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
14083843 TTATGGAAAG
14083853 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14083883 GTAGTAACTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:14089577 original size:26 final size:26
Alignment explanation
Indices: 14089548--14089732 Score: 87
Period size: 26 Copynumber: 7.3 Consensus size: 26
14089538 ATCCTCTCTC
14089548 GAGCCATATAA-CAGGAAGCTCACAAA
1 GAGCCAT-TAATCAGGAAGCTCACAAA
* *
14089574 GAGCCATTAATCGGGAAGTTCACAAA
1 GAGCCATTAATCAGGAAGCTCACAAA
* * ***
14089600 TAGCC-TT--TCAGGAAGCTTATTCA
1 GAGCCATTAATCAGGAAGCTCACAAA
* * *
14089623 G-GCTATATAA-CAGGAAGTTCACACA
1 GAGCCAT-TAATCAGGAAGCTCACAAA
* ** * *
14089648 GAACCA-TAATCAAAAAGTTCACATA
1 GAGCCATTAATCAGGAAGCTCACAAA
* ** *
14089673 GAACTTTTAATCAGGAAGCTCACGAA
1 GAGCCATTAATCAGGAAGCTCACAAA
** * * *
14089699 GAGCTTTTAAACGGGAAGCTCACGAA
1 GAGCCATTAATCAGGAAGCTCACAAA
14089725 GAGCCATT
1 GAGCCATT
14089733 TATTAGGAGC
Statistics
Matches: 119, Mismatches: 32, Indels: 16
0.71 0.19 0.10
Matches are distributed among these distances:
22 2 0.02
23 11 0.09
24 4 0.03
25 33 0.28
26 69 0.58
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.21
Consensus pattern (26 bp):
GAGCCATTAATCAGGAAGCTCACAAA
Found at i:14090941 original size:30 final size:31
Alignment explanation
Indices: 14090901--14090962 Score: 85
Period size: 30 Copynumber: 2.0 Consensus size: 31
14090891 TTATTTAATT
14090901 AATTATCATCATTTAT-TTT-TTTTCATTTTCC
1 AATTATCATCATTT-TCTTTATTTT-ATTTTCC
14090932 AATT-TCATCATTTTCTTTATTTTATTTTCC
1 AATTATCATCATTTTCTTTATTTTATTTTCC
14090962 A
1 A
14090963 TGGCTGAATC
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
29 1 0.03
30 20 0.69
31 8 0.28
ACGTcount: A:0.23, C:0.16, G:0.00, T:0.61
Consensus pattern (31 bp):
AATTATCATCATTTTCTTTATTTTATTTTCC
Found at i:14095612 original size:16 final size:16
Alignment explanation
Indices: 14095591--14095623 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14095581 AAAGAAAATC
14095591 AAAATAAGTA-ATATAT
1 AAAATAA-TATATATAT
14095607 AAAATAATATATATAT
1 AAAATAATATATATAT
14095623 A
1 A
14095624 TATTAATCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 2 0.12
16 14 0.88
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (16 bp):
AAAATAATATATATAT
Found at i:14102311 original size:25 final size:25
Alignment explanation
Indices: 14102277--14102430 Score: 167
Period size: 25 Copynumber: 6.2 Consensus size: 25
14102267 TACATCAATA
14102277 ATTAAAATAAGGACTTTAATATTTT
1 ATTAAAATAAGGACTTTAATATTTT
* *
14102302 ATTAAAATAAGGAC--TAATCA-ATA
1 ATTAAAATAAGGACTTTAAT-ATTTT
14102325 ATTAAAATAAGGACTTTAATATTTT
1 ATTAAAATAAGGACTTTAATATTTT
* *
14102350 ATTAAAATAAGGAC--TAATCA-ATA
1 ATTAAAATAAGGACTTTAAT-ATTTT
14102373 ATTAAAATAAGGACTTTAATATTTT
1 ATTAAAATAAGGACTTTAATATTTT
* *
14102398 ATTAAAAATCAAGAAATTTAATATTTT
1 ATT-AAAAT-AAGGACTTTAATATTTT
*
14102425 AATAAA
1 ATTAAA
14102431 GAAATTTAAA
Statistics
Matches: 108, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
23 38 0.35
24 4 0.04
25 41 0.38
26 8 0.07
27 17 0.16
ACGTcount: A:0.51, C:0.05, G:0.07, T:0.37
Consensus pattern (25 bp):
ATTAAAATAAGGACTTTAATATTTT
Found at i:14102323 original size:48 final size:48
Alignment explanation
Indices: 14102270--14102404 Score: 270
Period size: 48 Copynumber: 2.8 Consensus size: 48
14102260 TAAAAATTAC
14102270 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
1 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
14102318 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
1 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
14102366 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAA
1 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAA
14102405 ATCAAGAAAT
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 87 1.00
ACGTcount: A:0.50, C:0.06, G:0.07, T:0.36
Consensus pattern (48 bp):
ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
Found at i:14102328 original size:23 final size:23
Alignment explanation
Indices: 14102270--14102387 Score: 132
Period size: 23 Copynumber: 5.0 Consensus size: 23
14102260 TAAAAATTAC
14102270 ATCAATAATTAAAATAAGGACTTTA
1 ATCAATAATTAAAATAAGGAC--TA
* *
14102295 AT-ATTTTATTAAAATAAGGACTA
1 ATCA-ATAATTAAAATAAGGACTA
14102318 ATCAATAATTAAAATAAGGACTTTA
1 ATCAATAATTAAAATAAGGAC--TA
* *
14102343 AT-ATTTTATTAAAATAAGGACTA
1 ATCA-ATAATTAAAATAAGGACTA
14102366 ATCAATAATTAAAATAAGGACT
1 ATCAATAATTAAAATAAGGACT
14102388 TTAATATTTT
Statistics
Matches: 79, Mismatches: 8, Indels: 14
0.78 0.08 0.14
Matches are distributed among these distances:
23 39 0.49
24 4 0.05
25 36 0.46
ACGTcount: A:0.51, C:0.07, G:0.08, T:0.34
Consensus pattern (23 bp):
ATCAATAATTAAAATAAGGACTA
Found at i:14105969 original size:24 final size:25
Alignment explanation
Indices: 14105942--14105989 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
14105932 TTAAGAAATT
14105942 TAAT-ATTAATTA-TTAAATTATATG
1 TAATAATT-ATTATTTAAATTATATG
14105966 TAATAATTATTATTTTAAATTATA
1 TAATAATTATTA-TTTAAATTATA
14105990 CAAATTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 8 0.38
25 3 0.14
26 10 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (25 bp):
TAATAATTATTATTTAAATTATATG
Found at i:14106143 original size:66 final size:63
Alignment explanation
Indices: 14106068--14106278 Score: 183
Period size: 66 Copynumber: 3.4 Consensus size: 63
14106058 AAATATATTT
14106068 AATATTAATTATTTCAAATTTTCATTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTATTT-AAATTTT-ATTTA-AGTATCATATATTATGATTTGAGTAAATTCATATAA
14106133 G
63 G
* * * * **
14106134 AATATTAATTATTAAGAATTTTA-TTAA--ATTATATATT-TTAATT-A-T-AA-T-ATAT-TT
1 AATATTAATTATTTA-AATTTTATTTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
* *
14106188 AATAATAATTATGTT-GATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTCATATA
1 AATATTAATTAT-TTAAATTT-TA-TTTA-AGTATCATATATTATGATTTGAGTAAATTCATATA
14106252 AG
62 AG
*
14106254 AATATTAATTATTAAGAATTTTATT
1 AATATTAATTATTTA-AATTTTATT
14106279 AAATTATATA
Statistics
Matches: 111, Mismatches: 17, Indels: 35
0.68 0.10 0.21
Matches are distributed among these distances:
53 4 0.04
54 13 0.12
55 5 0.05
56 4 0.04
57 3 0.03
58 1 0.01
59 10 0.09
60 8 0.07
61 10 0.09
62 1 0.01
63 3 0.03
64 4 0.04
65 9 0.08
66 32 0.29
67 4 0.04
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (63 bp):
AATATTAATTATTTAAATTTTATTTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:14106159 original size:120 final size:120
Alignment explanation
Indices: 14106030--14106322 Score: 493
Period size: 120 Copynumber: 2.4 Consensus size: 120
14106020 AATTATTTTA
* * *
14106030 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTT-TCA-
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT--AATTTAT-AT
*
14106092 TTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
63 TTTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
14106150 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTGATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
14106215 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
14106270 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
14106323 TAAATATGAT
Statistics
Matches: 165, Mismatches: 5, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
119 5 0.03
120 158 0.96
121 2 0.01
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:14106190 original size:15 final size:15
Alignment explanation
Indices: 14106155--14106196 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
14106145 TTAAGAATTT
*
14106155 TATTAAATTAT-ATA
1 TATTTAATTATAATA
14106169 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
14106183 TATTTAATAATAAT
1 TATTTAATTATAAT
14106197 TATGTTGATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:14106305 original size:16 final size:16
Alignment explanation
Indices: 14106284--14106325 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
14106274 TTATTAAATT
*
14106284 ATATATTTTAATTATA
1 ATATATTTTAATAATA
14106300 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
14106315 AT-TATGTTTAA
1 ATATAT-TTTAA
14106326 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:14106310 original size:15 final size:15
Alignment explanation
Indices: 14106275--14106316 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
14106265 TTAAGAATTT
*
14106275 TATTAAATTAT-ATA
1 TATTTAATTATAATA
14106289 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
14106303 TATTTAATAATAAT
1 TATTTAATTATAAT
14106317 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:14106465 original size:83 final size:84
Alignment explanation
Indices: 14106372--14106759 Score: 267
Period size: 83 Copynumber: 4.5 Consensus size: 84
14106362 TTAAGCAAAT
**
14106372 TTAAATAACAATAACAATATTTAATATAAAT-TTCTGCTAA-TAACAATACTTATATATTAATTA
1 TTAAATAACAATAACAATATTTAATATAAATATT-TAATAATTAACAATACTTATATATTAATTA
*
14106435 TTAACAATATTTGTTATATA
65 TTAACAATATTTATTATATA
* * * ** *
14106455 TTAAATAACAATAACAATATTTAACAATAACAATATTTAATAATTTACCAAAACAAATTTATGCT
1 TTAAATAACAATAACAATATTTAA-TAT-A-AATATTTAATAA-TTAACAATACTTATATAT--T
*
14106520 AATTATTAAGAAT-TTTATTA-A-A
60 AATTATTAACAATATTTATTATATA
*** * * *
14106542 TTATATATTTTAATTAAAATATATTTAATAATAACTATGTTTAAATATGATTAA-AATATTTAT-
1 TTA-A-ATAACAA-TAACA-ATATTTAAT-ATAA--ATATTT-AATA--ATTAACAATACTTATA
* * * * * ** *
14106605 TATTGA-TAATAATAATCTTAAGCAAAT-
56 TATTAATTATTAACAATATTTATTATATA
**
14106632 TTAAATAACAATAACAATATTTAATATAAAT-TTCTGCTAA-TAACAATACTTATATATTAATTA
1 TTAAATAACAATAACAATATTTAATATAAATATT-TAATAATTAACAATACTTATATATTAATTA
14106695 TTAACAATATTTATTATATA
65 TTAACAATATTTATTATATA
*
14106715 TTAAATAACAATAACAATATTTAACAATAACAATATTTAATAATT
1 TTAAATAACAATAACAATATTTAA-TAT-A-AATATTTAATAATT
14106760 TACCAAAACA
Statistics
Matches: 229, Mismatches: 45, Indels: 58
0.69 0.14 0.17
Matches are distributed among these distances:
79 3 0.01
80 9 0.04
81 5 0.02
82 18 0.08
83 51 0.22
84 4 0.02
85 6 0.03
86 23 0.10
87 13 0.06
88 26 0.11
89 18 0.08
90 22 0.10
91 18 0.08
92 9 0.04
93 3 0.01
94 1 0.00
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (84 bp):
TTAAATAACAATAACAATATTTAATATAAATATTTAATAATTAACAATACTTATATATTAATTAT
TAACAATATTTATTATATA
Found at i:14106481 original size:16 final size:16
Alignment explanation
Indices: 14106460--14106494 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
14106450 ATATATTAAA
14106460 TAACAATAACAATATT
1 TAACAATAACAATATT
14106476 TAACAATAACAATATT
1 TAACAATAACAATATT
14106492 TAA
1 TAA
14106495 TAATTTACCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.31
Consensus pattern (16 bp):
TAACAATAACAATATT
Found at i:14106559 original size:18 final size:17
Alignment explanation
Indices: 14106531--14106565 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14106521 ATTATTAAGA
*
14106531 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
14106548 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
14106566 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:14106720 original size:260 final size:260
Alignment explanation
Indices: 14106259--14106910 Score: 1241
Period size: 260 Copynumber: 2.5 Consensus size: 260
14106249 ATAAGAATAT
*
14106259 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
14106324 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTAAGCAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTAAGCAAATTTAAATAACAATAACAA
*
14106389 TATTTAATATAAATTTCTGCTAATAACAATACTTATATATTAATTATTAACAATATTTGTTATAT
131 TATTTAATATAAATTTCTGCTAATAACAATACTTATATATTAATTATTAACAATATTTATTATAT
14106454 ATTAAATAACAATAACAATATTTAACAATAACAATATTTAATAATTTACCAAAACAAATTTATGC
196 ATTAAATAACAATAACAATATTTAACAATAACAATATTTAATAATTTACCAAAACAAATTTATGC
*
14106519 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAACTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
14106584 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTAAGCAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTAAGCAAATTTAAATAACAATAACAA
14106649 TATTTAATATAAATTTCTGCTAATAACAATACTTATATATTAATTATTAACAATATTTATTATAT
131 TATTTAATATAAATTTCTGCTAATAACAATACTTATATATTAATTATTAACAATATTTATTATAT
*
14106714 ATTAAATAACAATAACAATATTTAACAATAACAATATTTAATAATTTACCAAAACAAATTTCTGC
196 ATTAAATAACAATAACAATATTTAACAATAACAATATTTAATAATTTACCAAAACAAATTTATGC
14106779 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
***
14106844 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTAAGCAAATTTAAATAACAATAACAA
14106909 TA
131 TA
14106911 ATCATTTACC
Statistics
Matches: 384, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
260 384 1.00
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.43
Consensus pattern (260 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAAATATTTATTATTGATAATAATAATCTTAAGCAAATTTAAATAACAATAACAA
TATTTAATATAAATTTCTGCTAATAACAATACTTATATATTAATTATTAACAATATTTATTATAT
ATTAAATAACAATAACAATATTTAACAATAACAATATTTAATAATTTACCAAAACAAATTTATGC
Found at i:14106741 original size:16 final size:16
Alignment explanation
Indices: 14106720--14106754 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
14106710 ATATATTAAA
14106720 TAACAATAACAATATT
1 TAACAATAACAATATT
14106736 TAACAATAACAATATT
1 TAACAATAACAATATT
14106752 TAA
1 TAA
14106755 TAATTTACCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.31
Consensus pattern (16 bp):
TAACAATAACAATATT
Found at i:14106819 original size:18 final size:17
Alignment explanation
Indices: 14106791--14106825 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14106781 ATTATTAAGA
*
14106791 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
14106808 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
14106826 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:14107083 original size:16 final size:16
Alignment explanation
Indices: 14107062--14107103 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
14107052 GATTTGCTAT
14107062 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
14107078 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
14107094 TACACACTCT
1 TACAC-CTCT
14107104 CAATGCTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 21 0.84
17 4 0.16
ACGTcount: A:0.36, C:0.38, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:14118371 original size:24 final size:23
Alignment explanation
Indices: 14118335--14118380 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
14118325 CATTTAAATA
14118335 TATTTTAAATTTTAATG-TATAT
1 TATTTTAAATTTTAATGATATAT
14118357 TATTTCTAATATTTTAATGATATA
1 TATTT-TAA-ATTTTAATGATATA
14118381 AATGCTATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 5 0.24
23 3 0.14
24 9 0.43
25 4 0.19
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (23 bp):
TATTTTAAATTTTAATGATATAT
Found at i:14124218 original size:220 final size:221
Alignment explanation
Indices: 14123831--14124271 Score: 821
Period size: 220 Copynumber: 2.0 Consensus size: 221
14123821 CTTACAATGG
* *
14123831 ATGAGTACAAATGAGGGGAGGCTCTCTATTTATAGTTGAGTTCCCCCAAAACTGACGGTTAAGAT
1 ATGAGTACAAATGAGGGGAGGCTCTCTATTTATAGTTGAGCTCCCCCAAAACCGACGGTTAAGAT
* *
14123896 ACATTTACATCGACGGACGAGATTAACCATATCCCTTGATTTTAGGGATTTACAAGATATGCCAT
66 ACATTTACATCGACGAACGAGATTAACCATATCCCTTGATTTTAGAGATTTACAAGATATGCCAT
*
14123961 ATCAAATTTAATCTAATCTTTACAAGATATTATTCCCTCAATCTTCTAAGATTAGTTACCAAATT
131 ATCAAATTTAATCTAATCTTTACAAGATATGATTCCCTCAATCTTCTAAGATTAGTTACCAAATT
14124026 ATCCTAAGTTGCCATATCTTCATTAT
196 ATCCTAAGTTGCCATATCTTCATTAT
14124052 ATGAGTACAAATGAGGGGAGGCTCTCTATTTATAGTTGAGCT-CCCCAAAACCGACGGTTAAGAT
1 ATGAGTACAAATGAGGGGAGGCTCTCTATTTATAGTTGAGCTCCCCCAAAACCGACGGTTAAGAT
14124116 ACATTTACATCGACGAACGAGATTAACCATATCCCTTGATTTTAGAGATTTACAAGATATGCCAT
66 ACATTTACATCGACGAACGAGATTAACCATATCCCTTGATTTTAGAGATTTACAAGATATGCCAT
*
14124181 ATCAAATTTAATCTAATCTTTACAAGATATGATTCCCTCAATCTTCTAAGATTAGTTACCAAGTT
131 ATCAAATTTAATCTAATCTTTACAAGATATGATTCCCTCAATCTTCTAAGATTAGTTACCAAATT
14124246 ATCCTAAGTTGCCATATCTTCATTAT
196 ATCCTAAGTTGCCATATCTTCATTAT
14124272 CGGGCCAACC
Statistics
Matches: 214, Mismatches: 6, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
220 173 0.81
221 41 0.19
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (221 bp):
ATGAGTACAAATGAGGGGAGGCTCTCTATTTATAGTTGAGCTCCCCCAAAACCGACGGTTAAGAT
ACATTTACATCGACGAACGAGATTAACCATATCCCTTGATTTTAGAGATTTACAAGATATGCCAT
ATCAAATTTAATCTAATCTTTACAAGATATGATTCCCTCAATCTTCTAAGATTAGTTACCAAATT
ATCCTAAGTTGCCATATCTTCATTAT
Found at i:14126872 original size:19 final size:19
Alignment explanation
Indices: 14126850--14126886 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14126840 CTAGAGTAAC
*
14126850 TGAAAAATTTCAAAATATT
1 TGAAAAATATCAAAATATT
*
14126869 TGAAATATATCAAAATAT
1 TGAAAAATATCAAAATAT
14126887 CATCTATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.35
Consensus pattern (19 bp):
TGAAAAATATCAAAATATT
Found at i:14129619 original size:22 final size:23
Alignment explanation
Indices: 14129577--14129620 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
14129567 ATTTAAGAAA
14129577 ATATTGTTTTTTTTTCCAAATTCT
1 ATATTGTTTTTTTTT-CAAATTCT
14129601 ATATT-TTCTTTTTTT-AAATT
1 ATATTGTT-TTTTTTTCAAATT
14129621 TTTGATATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 5 0.26
23 2 0.11
24 12 0.63
ACGTcount: A:0.23, C:0.09, G:0.02, T:0.66
Consensus pattern (23 bp):
ATATTGTTTTTTTTTCAAATTCT
Found at i:14130373 original size:3 final size:3
Alignment explanation
Indices: 14130367--14130391 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
14130357 AATTATTAGA
14130367 ACT ACT ACT ACT ACT ACT ACT ACT A
1 ACT ACT ACT ACT ACT ACT ACT ACT A
14130392 TTTGTAGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.32, G:0.00, T:0.32
Consensus pattern (3 bp):
ACT
Found at i:14133285 original size:50 final size:50
Alignment explanation
Indices: 14133171--14133452 Score: 228
Period size: 50 Copynumber: 5.5 Consensus size: 50
14133161 TGCCAAAGTT
* * * * * *
14133171 ATGTCCCAGACATAGTCTTACATGGGA-TGTTTCTTGTA-CTGTCAATGCC
1 ATGTCCCAGACATGGTCTTACATGGGACT-TCTCATATAGGTGCCAATGCC
* * * * * *
14133220 ATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAGGTGCCCATGTC
1 ATGTCCCAGACATGGTCTTACATGGGACTTCTCATATAGGTGCCAATGCC
** * * * *
14133270 ATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAACGCC
1 ATGTCCCAGACATGGTCTTACATGGGACTTCTCATATAGGTGCCAATGCC
* * * * *
14133320 ATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCGAACGCC
1 ATGTCCCAGACATGGTCTTACATGGGACTTCTCATATAGGTGCCAATGCC
* * * *
14133370 ATGTCCCAAACATGGTCTTACACGAGACCTT-TCATAATCTCAATGATGCCAATGCC
1 ATGTCCCAGACATGGTCTTACATGGGA-CTTCTCAT-A--T--A-GGTGCCAATGCC
14133426 ATGTCCCAGACATGGTCTTACATGGGA
1 ATGTCCCAGACATGGTCTTACATGGGA
14133453 TCTCTTTACC
Statistics
Matches: 185, Mismatches: 39, Indels: 11
0.79 0.17 0.05
Matches are distributed among these distances:
49 29 0.16
50 120 0.65
51 2 0.01
53 1 0.01
56 33 0.18
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (50 bp):
ATGTCCCAGACATGGTCTTACATGGGACTTCTCATATAGGTGCCAATGCC
Found at i:14133338 original size:100 final size:103
Alignment explanation
Indices: 14133217--14133449 Score: 256
Period size: 100 Copynumber: 2.3 Consensus size: 103
14133207 TACTGTCAAT
* * ** * * * *
14133217 GCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAGGTGCCCATGTCATGTCCCAGACA
1 GCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATAGGTGCCAACGCCATGTCCCAAACA
** * * *
14133282 TGGTCTTACGGGGGACC-TC-TCATCT-TGGTGCCAAC
66 TGGTCTTACACGAGACCTTCATAATCTATGATGCCAAC
* * * *
14133317 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCGAACGCCATGTCCCAAACA
1 GCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATAGGTGCCAACGCCATGTCCCAAACA
*
14133382 TGGTCTTACACGAGACCTTTCATAATCTCAATGATGCCAAT
66 TGGTCTTACACGAGACC-TTCATAATCT--ATGATGCCAAC
14133423 GCCATGTCCCAGACATGGTCTTACATG
1 GCCATGTCCCAGACATGGTCTTACATG
14133450 GGATCTCTTT
Statistics
Matches: 109, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
100 67 0.61
102 2 0.02
103 5 0.05
106 35 0.32
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.27
Consensus pattern (103 bp):
GCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATAGGTGCCAACGCCATGTCCCAAACA
TGGTCTTACACGAGACCTTCATAATCTATGATGCCAAC
Found at i:14144988 original size:49 final size:49
Alignment explanation
Indices: 14144844--14144964 Score: 233
Period size: 49 Copynumber: 2.5 Consensus size: 49
14144834 TAAGAATATT
*
14144844 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAATTA
14144893 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAATTA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAATTA
14144942 AACTATTTTGTATTTTATTACAT
1 AACTATTTTGTATTTTATTACAT
14144965 TAATATAAAC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (49 bp):
AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAATTA
Found at i:14145410 original size:18 final size:18
Alignment explanation
Indices: 14145384--14145426 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
14145374 GACTAGAAAA
* * *
14145384 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
14145402 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
14145420 AGGATAC
1 AGGATAC
14145427 GCATCTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:14147220 original size:11 final size:12
Alignment explanation
Indices: 14147204--14147240 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
14147194 AAAAATAGGG
14147204 ATTTAAGA-GAA
1 ATTTAAGAGGAA
14147215 ATTTAAGAGGAA
1 ATTTAAGAGGAA
*
14147227 A-TTGAGAGGAA
1 ATTTAAGAGGAA
14147238 ATT
1 ATT
14147241 GAGATTAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
11 18 0.78
12 5 0.22
ACGTcount: A:0.49, C:0.00, G:0.24, T:0.27
Consensus pattern (12 bp):
ATTTAAGAGGAA
Found at i:14147241 original size:11 final size:11
Alignment explanation
Indices: 14147220--14147303 Score: 54
Period size: 11 Copynumber: 8.0 Consensus size: 11
14147210 GAGAAATTTA
14147220 AGAGGAAATTG
1 AGAGGAAATTG
14147231 AGAGGAAATTG
1 AGAGGAAATTG
**
14147242 AGATTAAA-T-
1 AGAGGAAATTG
* *
14147251 A-TGG-ATTTG
1 AGAGGAAATTG
14147260 AGA-GAAATTTG
1 AGAGGAAA-TTG
14147271 -GAAGGAAATTG
1 AG-AGGAAATTG
* *
14147282 AGAGCAATTTG
1 AGAGGAAATTG
14147293 AGAGGAAATTG
1 AGAGGAAATTG
14147304 GGAAAATAAT
Statistics
Matches: 53, Mismatches: 12, Indels: 16
0.65 0.15 0.20
Matches are distributed among these distances:
7 1 0.02
8 1 0.02
9 3 0.06
10 3 0.06
11 40 0.75
12 5 0.09
ACGTcount: A:0.43, C:0.01, G:0.31, T:0.25
Consensus pattern (11 bp):
AGAGGAAATTG
Found at i:14147257 original size:51 final size:51
Alignment explanation
Indices: 14147196--14147295 Score: 139
Period size: 51 Copynumber: 2.0 Consensus size: 51
14147186 AAATAATTAA
*
14147196 AAATAGGGATTTAAGAGAAATTTA-AGAGGAAATTGAGAGGAAATTGAGATT
1 AAATAGGGATTTAAGAGAAATTTAGA-AGGAAATTGAGAGCAAATTGAGATT
* * * *
14147247 AAATATGGATTTGAGAGAAATTTGGAAGGAAATTGAGAGCAATTTGAGA
1 AAATAGGGATTTAAGAGAAATTTAGAAGGAAATTGAGAGCAAATTGAGA
14147296 GGAAATTGGG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
51 42 0.98
52 1 0.02
ACGTcount: A:0.45, C:0.01, G:0.28, T:0.26
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTTAGAAGGAAATTGAGAGCAAATTGAGATT
Found at i:14147282 original size:22 final size:22
Alignment explanation
Indices: 14147257--14147303 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
14147247 AAATATGGAT
14147257 TTGAGAGAAATTTG-GAAGGAAA
1 TTGAGAGAAATTTGAG-AGGAAA
*
14147279 TTGAGAGCAATTTGAGAGGAAA
1 TTGAGAGAAATTTGAGAGGAAA
14147301 TTG
1 TTG
14147304 GGAAAATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 22 0.96
23 1 0.04
ACGTcount: A:0.40, C:0.02, G:0.32, T:0.26
Consensus pattern (22 bp):
TTGAGAGAAATTTGAGAGGAAA
Found at i:14147315 original size:34 final size:33
Alignment explanation
Indices: 14147255--14147318 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 33
14147245 TTAAATATGG
* *
14147255 ATTTGAGAGAAATTTGGAAGGAAATTGAGAGCA
1 ATTTGAGAGAAATTGGGAAGAAAATTGAGAGCA
14147288 ATTTGAGAGGAAATTGGGAA-AATAATTGAGA
1 ATTTGAGA-GAAATTGGGAAGAA-AATTGAGA
14147319 AATTGATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
33 9 0.33
34 18 0.67
ACGTcount: A:0.44, C:0.02, G:0.30, T:0.25
Consensus pattern (33 bp):
ATTTGAGAGAAATTGGGAAGAAAATTGAGAGCA
Found at i:14149232 original size:16 final size:17
Alignment explanation
Indices: 14149200--14149232 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
14149190 ATTGATTGTA
14149200 ATAAAAATATGAAATGAT
1 ATAAAAATA-GAAATGAT
14149218 ATAAAAATA-AAATGA
1 ATAAAAATAGAAATGA
14149233 ATTAGATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (17 bp):
ATAAAAATAGAAATGAT
Found at i:14151848 original size:29 final size:29
Alignment explanation
Indices: 14151811--14151866 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
14151801 TAACATCATT
* *
14151811 TTATGTTTAT-AAATTGCAATAATAAATAA
1 TTATATTTATCAAA-TGCAAAAATAAATAA
*
14151840 TTATATTTATCCAATGCAAAAATAAAT
1 TTATATTTATCAAATGCAAAAATAAAT
14151867 TAATGTATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 21 0.91
30 2 0.09
ACGTcount: A:0.48, C:0.07, G:0.05, T:0.39
Consensus pattern (29 bp):
TTATATTTATCAAATGCAAAAATAAATAA
Found at i:14153531 original size:3 final size:3
Alignment explanation
Indices: 14153523--14153563 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
14153513 CAAAAACATC
14153523 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
14153564 TGATTTTGCC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:14155049 original size:37 final size:37
Alignment explanation
Indices: 14154984--14155092 Score: 177
Period size: 37 Copynumber: 3.0 Consensus size: 37
14154974 TACGTATGAT
* *
14154984 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
14155019 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
14155056 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
14155093 TAAAGCTATC
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
35 10 0.14
36 3 0.04
37 56 0.81
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:14155135 original size:52 final size:52
Alignment explanation
Indices: 14155056--14155323 Score: 379
Period size: 52 Copynumber: 5.2 Consensus size: 52
14155046 TAAGTGTAGC
* * **
14155056 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
*
14155109 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAACTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *
14155161 CAC---T---TTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
*
14155207 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *
14155259 CACTTTCCACTTGTCACTTGATC-GATAAGTGTAGCCGAAGCTATCACCTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
14155310 CACTTTGTCACTTG
1 CACTTT-TCACTTG
14155324 ATCAGAAGTA
Statistics
Matches: 195, Mismatches: 13, Indels: 15
0.87 0.06 0.07
Matches are distributed among these distances:
46 42 0.22
49 1 0.01
51 33 0.17
52 110 0.56
53 9 0.05
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
Found at i:14155166 original size:98 final size:98
Alignment explanation
Indices: 14155056--14155323 Score: 403
Period size: 98 Copynumber: 2.7 Consensus size: 98
14155046 TAAGTGTAGC
**
14155056 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTTCACTT
14155121 GTCACTTGATCAGATAAGTGTAGCCGAAACTAT
66 GTCACTTGATCAGATAAGTGTAGCCGAAACTAT
* *
14155154 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTTCACTT
*
14155219 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
66 GTCACTTGATCAGATAAGTGTAGCCGAAACTAT
* *
14155252 CACTTATCACTTTCCACTTGTCACTTGATC-GATAAGTGTAGCCGAAGCTATCACCTATCACTTT
1 CACTTATCAC--T----TTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT
14155316 GTCACTTG
60 -TCACTTG
14155324 ATCAGAAGTA
Statistics
Matches: 154, Mismatches: 9, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
98 103 0.67
100 1 0.01
103 32 0.21
104 18 0.12
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.35
Consensus pattern (98 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTTCACTT
GTCACTTGATCAGATAAGTGTAGCCGAAACTAT
Found at i:14155270 original size:45 final size:44
Alignment explanation
Indices: 14155204--14155329 Score: 128
Period size: 51 Copynumber: 2.6 Consensus size: 44
14155194 AGCTATCACT
14155204 TATCACTT-TCCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
1 TATCACTTAT-CACTT-TCACTTGATCAGATAAGTGTAGCCGAAGC
*
14155249 TATCACTTATCACTTTCCACTTGTCACTTGATCGATAAGTGTAGCCGAAGC
1 TATCACTTATCACTTT-CACTTG--A--TCA--GATAAGTGTAGCCGAAGC
*
14155300 TATCACCTATCACTTTGTCACTTGATCAGA
1 TATCACTTATCAC-TT-TCACTTGATCAGA
14155330 AGTACTCAAA
Statistics
Matches: 68, Mismatches: 3, Indels: 19
0.76 0.03 0.21
Matches are distributed among these distances:
44 1 0.01
45 19 0.28
46 3 0.04
47 1 0.01
48 2 0.03
49 2 0.03
50 1 0.01
51 30 0.44
52 8 0.12
53 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.33
Consensus pattern (44 bp):
TATCACTTATCACTTTCACTTGATCAGATAAGTGTAGCCGAAGC
Found at i:14165896 original size:45 final size:45
Alignment explanation
Indices: 14165846--14166016 Score: 182
Period size: 45 Copynumber: 3.8 Consensus size: 45
14165836 CGTGCTTTCA
* * *
14165846 CATGATGCCATAACGTCTTTCAGCTACGATCTTACTAAT-TTCTTT
1 CATGATGCCATAACGTCTTTCAGCTATGGTCTTACTAATCTT-TAT
* * * *
14165891 CATGATGTCATAACATCTTTCAGTTATGGTCTTACTCATCTTTAT
1 CATGATGCCATAACGTCTTTCAGCTATGGTCTTACTAATCTTTAT
** * * * *
14165936 GGTGATGCCATAGCTTCTTTCAACTATGGTCTTACTTATCTTTAT
1 CATGATGCCATAACGTCTTTCAGCTATGGTCTTACTAATCTTTAT
* * *
14165981 CATGATGTCATAGCGTCTTTCAGCTATTGTCTTACT
1 CATGATGCCATAACGTCTTTCAGCTATGGTCTTACT
14166017 CATTTAAAGT
Statistics
Matches: 104, Mismatches: 21, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
45 102 0.98
46 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.43
Consensus pattern (45 bp):
CATGATGCCATAACGTCTTTCAGCTATGGTCTTACTAATCTTTAT
Found at i:14166001 original size:90 final size:90
Alignment explanation
Indices: 14165848--14166019 Score: 229
Period size: 90 Copynumber: 1.9 Consensus size: 90
14165838 TGCTTTCACA
* *
14165848 TGATGCCATAACGTCTTTCAGCTACGATCTTACTAATTTCTTTCATGATGTCATAACATCTTTCA
1 TGATGCCATAACGTCTTTCAACTACGATCTTACTAATTTCTATCATGATGTCATAACATCTTTCA
*
14165913 GTTATGGTCTTACTCATCTTTATGG
66 GCTATGGTCTTACTCATCTTTATGG
* * * * * * *
14165938 TGATGCCATAGCTTCTTTCAACTATGGTCTTACTTATCTT-TATCATGATGTCATAGCGTCTTTC
1 TGATGCCATAACGTCTTTCAACTACGATCTTACTAAT-TTCTATCATGATGTCATAACATCTTTC
*
14166002 AGCTATTGTCTTACTCAT
65 AGCTATGGTCTTACTCAT
14166020 TTAAAGTACA
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
90 68 0.97
91 2 0.03
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.43
Consensus pattern (90 bp):
TGATGCCATAACGTCTTTCAACTACGATCTTACTAATTTCTATCATGATGTCATAACATCTTTCA
GCTATGGTCTTACTCATCTTTATGG
Found at i:14166650 original size:20 final size:21
Alignment explanation
Indices: 14166622--14166662 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
14166612 AGAGAATTTC
* *
14166622 TTTTCTAAGCATA-AATTCTA
1 TTTTATAAGAATACAATTCTA
14166642 TTTTATAAGAATACAATTCTA
1 TTTTATAAGAATACAATTCTA
14166663 CCAGTTTCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.39, C:0.12, G:0.05, T:0.44
Consensus pattern (21 bp):
TTTTATAAGAATACAATTCTA
Found at i:14168887 original size:23 final size:23
Alignment explanation
Indices: 14168841--14168887 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
14168831 GAGATAAAAG
*
14168841 AAAAAAAATAAAAGAATTTTTAA
1 AAAAAAAATAAAAGAATTTCTAA
*
14168864 AAAAAAAATATAAG-ATCTTCTAA
1 AAAAAAAATAAAAGAAT-TTCTAA
14168887 A
1 A
14168888 TCTTTCTAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 2 0.10
23 19 0.90
ACGTcount: A:0.66, C:0.04, G:0.04, T:0.26
Consensus pattern (23 bp):
AAAAAAAATAAAAGAATTTCTAA
Found at i:14174212 original size:15 final size:16
Alignment explanation
Indices: 14174186--14174215 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14174176 ATTTAAATTT
14174186 AATTATAAAATATATC
1 AATTATAAAATATATC
14174202 AATTA-AAAATATAT
1 AATTATAAAATATAT
14174216 TTTTATTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (16 bp):
AATTATAAAATATATC
Found at i:14177011 original size:159 final size:159
Alignment explanation
Indices: 14176722--14177034 Score: 520
Period size: 159 Copynumber: 2.0 Consensus size: 159
14176712 TTTACCAAGA
* *
14176722 AAACTCATTGGGGTAAAACCTTGGTTAAAAGAAAAGAGGACAGCGTGTTTTAGACTCCCCCTATT
1 AAACTCATTGGGATAAAACCTTGGTTAAAAGAAAAGAGGACAGCGTGTTTTAGACTCCCCCTAAT
* * *
14176787 GGCAACATCACATTATATCTTTGAGCTGGAGCATTCAATCTTGTATACTAGTCTTTCAAACGTTG
66 AGCAACATCACATTAGATCTTTGAGCTGGAACATTCAATCTTGTATACTAGTCTTTCAAACGTTG
* *
14176852 TGGTTGGTAATGCCTTGGTAAAAAAGATC
131 TGGTCGGTAATGCCCTGGTAAAAAAGATC
**
14176881 AAACTCATTGGGATAAAACCTTGGTTAAAAGAAAAGAGGACAGCGTGTTTTAGACTCCCTTTAAT
1 AAACTCATTGGGATAAAACCTTGGTTAAAAGAAAAGAGGACAGCGTGTTTTAGACTCCCCCTAAT
*
14176946 AGCAACATCAGATTAGATCTTTGAGCT-GACACATTCAATCTTGTATACTAGTCTTTCAAACGTT
66 AGCAACATCACATTAGATCTTTGAGCTGGA-ACATTCAATCTTGTATACTAGTCTTTCAAACGTT
14177010 GTGGTCGGTAATGCCCTGGTAAAAA
130 GTGGTCGGTAATGCCCTGGTAAAAA
14177035 CATCAATCAA
Statistics
Matches: 143, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
158 2 0.01
159 141 0.99
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (159 bp):
AAACTCATTGGGATAAAACCTTGGTTAAAAGAAAAGAGGACAGCGTGTTTTAGACTCCCCCTAAT
AGCAACATCACATTAGATCTTTGAGCTGGAACATTCAATCTTGTATACTAGTCTTTCAAACGTTG
TGGTCGGTAATGCCCTGGTAAAAAAGATC
Found at i:14179029 original size:15 final size:15
Alignment explanation
Indices: 14179011--14179040 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
14179001 AATCTAAAAT
14179011 TAATCATTTAAACAA
1 TAATCATTTAAACAA
14179026 TAATCATTTAAACAA
1 TAATCATTTAAACAA
14179041 GCAATCTTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (15 bp):
TAATCATTTAAACAA
Found at i:14179419 original size:30 final size:30
Alignment explanation
Indices: 14179383--14179439 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
14179373 AACTTTTATA
*
14179383 ATGAATTCTCAATTAATTTTTGCATCATAT
1 ATGAATTCTCAATTAATTTTCGCATCATAT
*
14179413 ATGAATTCTTAATTAATTTTCGCATCA
1 ATGAATTCTCAATTAATTTTCGCATCA
14179440 ATTAATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.14, G:0.07, T:0.46
Consensus pattern (30 bp):
ATGAATTCTCAATTAATTTTCGCATCATAT
Found at i:14190643 original size:27 final size:26
Alignment explanation
Indices: 14190612--14190789 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
14190602 TAAATTGTAC
14190612 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
14190639 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
14190665 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
14190693 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
14190721 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
14190748 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
14190775 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14190790 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:14190728 original size:82 final size:81
Alignment explanation
Indices: 14190613--14190768 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
14190603 AAATTGTACA
* * *
14190613 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
14190677 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
14190694 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
14190759 TGCGAGTTGA
65 TGCGAATTGA
14190769 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:14190780 original size:82 final size:81
Alignment explanation
Indices: 14190609--14190789 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
14190599 GATTAAATTG
* * *
14190609 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
14190674 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
14190690 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
14190754 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
14190772 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
14190790 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:14196689 original size:27 final size:26
Alignment explanation
Indices: 14196658--14196835 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
14196648 TAAATTGCAC
14196658 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
14196685 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
14196711 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
14196739 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
14196767 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
14196794 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
14196821 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14196836 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:14196774 original size:82 final size:81
Alignment explanation
Indices: 14196659--14196814 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
14196649 AAATTGCACA
* * *
14196659 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
14196723 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
14196740 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
14196805 TGCGAGTTGA
65 TGCGAATTGA
14196815 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:14196826 original size:82 final size:81
Alignment explanation
Indices: 14196656--14196835 Score: 218
Period size: 82 Copynumber: 2.2 Consensus size: 81
14196646 ATTAAATTGC
* * *
14196656 ACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAG
1 ACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
14196721 TGTGCGAATTGACCAT
66 TGTGCGAATTGACCAT
* * ** *
14196737 GCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTA
1 ACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTA
* **
14196801 AGTGTGCGAGTTGATTAT
64 AGTGTGCGAATTGACCAT
* *
14196819 ATAGCACTGAGTGTGCG
1 ACAGCACTAAGTGTGCG
14196836 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 19 0.23
82 63 0.77
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
ACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
TGTGCGAATTGACCAT
Found at i:14199002 original size:106 final size:106
Alignment explanation
Indices: 14198817--14199029 Score: 381
Period size: 106 Copynumber: 2.0 Consensus size: 106
14198807 TAGATAATTC
* * *
14198817 ATTTTACAAATCAACTGCCAGATTCATTACATCTCACATGCCAACTGAAAATGCTCCAATATGAA
1 ATTTTACAAATCAACTGCCAGATTCATTAAACCTCACATACCAACTGAAAATGCTCCAATATGAA
14198882 TTGATGTCCTAATAGGGAAAACTGTTAATGCAAAATAAAGT
66 TTGATGTCCTAATAGGGAAAACTGTTAATGCAAAATAAAGT
*
14198923 ATTTTACAAATCAACTGCCAGATTCATTAAACCTCACATACCAGCTGAAAATGCTCCAATATGAA
1 ATTTTACAAATCAACTGCCAGATTCATTAAACCTCACATACCAACTGAAAATGCTCCAATATGAA
*
14198988 TTGATGTCCTAATAGGGAAAATTGTTAATGCAAAATAAAGT
66 TTGATGTCCTAATAGGGAAAACTGTTAATGCAAAATAAAGT
14199029 A
1 A
14199030 ATCCTTGCAT
Statistics
Matches: 102, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
106 102 1.00
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.28
Consensus pattern (106 bp):
ATTTTACAAATCAACTGCCAGATTCATTAAACCTCACATACCAACTGAAAATGCTCCAATATGAA
TTGATGTCCTAATAGGGAAAACTGTTAATGCAAAATAAAGT
Found at i:14202064 original size:30 final size:32
Alignment explanation
Indices: 14202004--14202067 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
14201994 CACTTATTTT
14202004 CACCTATGCCGAATGCATACACATAAATATATC
1 CACCTATGCCGAATGCA-ACACATAAATATATC
* *
14202037 CACCTATGCCGAATGCAACATATATATATAT
1 CACCTATGCCGAATGCAACACATAAATATAT
14202068 ATATACATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.27
Consensus pattern (32 bp):
CACCTATGCCGAATGCAACACATAAATATATC
Found at i:14202331 original size:41 final size:41
Alignment explanation
Indices: 14202286--14202482 Score: 308
Period size: 41 Copynumber: 4.8 Consensus size: 41
14202276 ACCGGCTCTT
*
14202286 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
14202327 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
*
14202368 AGCTTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
14202409 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
14202450 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
14202483 TAACGATAAA
Statistics
Matches: 146, Mismatches: 6, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
39 2 0.01
40 2 0.01
41 137 0.94
42 2 0.01
43 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:14204038 original size:13 final size:13
Alignment explanation
Indices: 14204020--14204044 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14204010 CCATCGAATG
14204020 CACACAAAATAAA
1 CACACAAAATAAA
14204033 CACACAAAATAA
1 CACACAAAATAA
14204045 TATTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:14205403 original size:41 final size:41
Alignment explanation
Indices: 14205294--14205406 Score: 163
Period size: 41 Copynumber: 2.8 Consensus size: 41
14205284 ACTTATTAAA
* * *
14205294 ATACACCGGCATAAAGCCTTCTAGGCACAAAGCCAAATATG
1 ATACACCGGCATGAAGCCTACTAGGCATAAAGCCAAATATG
* *
14205335 ATACACCGGCACGAAGCCTACTAGGCATAAAGCCTAATATG
1 ATACACCGGCATGAAGCCTACTAGGCATAAAGCCAAATATG
* *
14205376 GTACACCGGCATGAAGCCTGCTAGGCATAAA
1 ATACACCGGCATGAAGCCTACTAGGCATAAA
14205407 ACCTGCTATA
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 64 1.00
ACGTcount: A:0.36, C:0.27, G:0.20, T:0.17
Consensus pattern (41 bp):
ATACACCGGCATGAAGCCTACTAGGCATAAAGCCAAATATG
Found at i:14206306 original size:28 final size:28
Alignment explanation
Indices: 14206275--14206328 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
14206265 CTTATAATGT
*
14206275 TTTATTATATCA-TAATAATATAATATAC
1 TTTATTATAACATTAATAA-ATAATATAC
*
14206303 TTTATTATAACATTTATAAATAATAT
1 TTTATTATAACATTAATAAATAATAT
14206329 TAATAATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 18 0.78
29 5 0.22
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (28 bp):
TTTATTATAACATTAATAAATAATATAC
Found at i:14210432 original size:2 final size:2
Alignment explanation
Indices: 14210425--14210451 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
14210415 CTGAATGTGT
14210425 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
14210452 GTAGCTGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14211760 original size:41 final size:40
Alignment explanation
Indices: 14211715--14211847 Score: 176
Period size: 41 Copynumber: 3.2 Consensus size: 40
14211705 ACTGGCACTT
*
14211715 AGCCTGCTAGACATAAAGTCTGAAATGTTTCATCGGCGTCA
1 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCA-CGGCGTCA
*
14211756 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGACA
1 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCA-CGGCGTCA
* ** * *
14211797 AGCCTACTAGACTTAAAGTCTGAAACATATCACTGGCATCA
1 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCAC-GGCGTCA
14211838 AGCCTGCTAG
1 AGCCTGCTAG
14211848 GCACCGAGCC
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
40 1 0.01
41 80 0.99
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (40 bp):
AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACGGCGTCA
Found at i:14213514 original size:28 final size:26
Alignment explanation
Indices: 14213482--14213533 Score: 86
Period size: 28 Copynumber: 1.9 Consensus size: 26
14213472 TTTTTAATGT
14213482 TTATTATAACATAATAATATATTATACC
1 TTATTATAACAT-AT-ATATATTATACC
14213510 TTATTATAACATATATATATTATA
1 TTATTATAACATATATATATTATA
14213534 TTAATAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 10 0.42
27 2 0.08
28 12 0.50
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (26 bp):
TTATTATAACATATATATATTATACC
Found at i:14218624 original size:41 final size:41
Alignment explanation
Indices: 14218579--14218793 Score: 340
Period size: 41 Copynumber: 5.2 Consensus size: 41
14218569 ACTGGCACTT
*
14218579 AGCCTGCTAGACATAAAGTCTGAAATGTTTCACCGGCGTCA
1 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGTCA
*
14218620 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCATCA
1 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGTCA
*
14218661 AGCCTACTAGACTTAAAGTCTGAAATGTTTCACCGGCGTCA
1 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGTCA
* *
14218702 GGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGACA
1 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGTCA
** * * *
14218743 AGCCTGCTAGACTTAAAGTCTGAAACATATCACTGGCATCA
1 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGTCA
14218784 AGCCTGCTAG
1 AGCCTGCTAG
14218794 GCACCGAGCC
Statistics
Matches: 160, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 160 1.00
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (41 bp):
AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGTCA
Found at i:14220456 original size:28 final size:26
Alignment explanation
Indices: 14220424--14220475 Score: 86
Period size: 28 Copynumber: 1.9 Consensus size: 26
14220414 TTTTTAATGT
14220424 TTATTATAACATAATAATATATTATACC
1 TTATTATAACAT-AT-ATATATTATACC
14220452 TTATTATAACATATATATATTATA
1 TTATTATAACATATATATATTATA
14220476 TTAATAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 10 0.42
27 2 0.08
28 12 0.50
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (26 bp):
TTATTATAACATATATATATTATACC
Found at i:14223896 original size:51 final size:51
Alignment explanation
Indices: 14223840--14223976 Score: 157
Period size: 51 Copynumber: 2.7 Consensus size: 51
14223830 TATGGTAACT
* *
14223840 AATCTTAGAGGATATGATATTATAATCTTAGAGATCTTAGATATGATATGG
1 AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGG
* * * *** * * **
14223891 AATCTTATAAGATATTATTTTATAAGAATACATATCTTATCTAAGATATGG
1 AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGG
*
14223942 AATCTTAGAAGATATGATATTATATTCTTAGAGAT
1 AATCTTAGAAGATATGATATTATAATCTTAGAGAT
14223977 TTGATGGTAG
Statistics
Matches: 65, Mismatches: 21, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
51 65 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (51 bp):
AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGG
Found at i:14226918 original size:51 final size:51
Alignment explanation
Indices: 14226862--14226998 Score: 157
Period size: 51 Copynumber: 2.7 Consensus size: 51
14226852 TATGGTAACT
* *
14226862 AATCTTAGAGGATATGATATTATAATCTTAGAGATCTTAGATATGATATGG
1 AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGG
* * * *** * * **
14226913 AATCTTATAAGATATTATTTTATAAGAATACATATCTTATCTAAGATATGG
1 AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGG
*
14226964 AATCTTAGAAGATATGATATTATATTCTTAGAGAT
1 AATCTTAGAAGATATGATATTATAATCTTAGAGAT
14226999 TTGATGGTAG
Statistics
Matches: 65, Mismatches: 21, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
51 65 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (51 bp):
AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGG
Found at i:14228424 original size:3 final size:3
Alignment explanation
Indices: 14228416--14228455 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
14228406 ACTGTTTCTA
*
14228416 TAT TAT TAT TAT TAT TAC TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
14228456 CTGCATACAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:14232415 original size:19 final size:20
Alignment explanation
Indices: 14232391--14232431 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
14232381 AAAACTCTAG
*
14232391 AAAAAATGTAGA-AAAACTA
1 AAAAAATCTAGAGAAAACTA
14232410 AAAAAATCTAGAGAAAACTA
1 AAAAAATCTAGAGAAAACTA
14232430 AA
1 AA
14232432 TCTAAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.68, C:0.07, G:0.10, T:0.15
Consensus pattern (20 bp):
AAAAAATCTAGAGAAAACTA
Found at i:14235313 original size:40 final size:40
Alignment explanation
Indices: 14235222--14235391 Score: 227
Period size: 40 Copynumber: 4.3 Consensus size: 40
14235212 TCCTCGTTCA
* * * *
14235222 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
*
14235261 AATGCCTTCGGGACGTAACCCGGATTTA-TCAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAGT-AACTCGCACG
* *
14235301 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
* *
14235341 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
*
14235381 AAGGCCTTCGG
1 AATGCCTTCGG
14235392 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
38 1 0.01
39 33 0.28
40 82 0.70
41 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
Found at i:14245886 original size:21 final size:19
Alignment explanation
Indices: 14245860--14245898 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
14245850 AACATTCTAC
14245860 AAAATTAATACACAAAAATAT
1 AAAATTAA-A-ACAAAAATAT
*
14245881 AAAATTCAAACAAAAATA
1 AAAATTAAAACAAAAATA
14245899 ATATGCACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 1 0.06
21 7 0.41
ACGTcount: A:0.69, C:0.10, G:0.00, T:0.21
Consensus pattern (19 bp):
AAAATTAAAACAAAAATAT
Found at i:14246043 original size:89 final size:87
Alignment explanation
Indices: 14245813--14246138 Score: 230
Period size: 89 Copynumber: 3.7 Consensus size: 87
14245803 AAGTAATAGT
* *
14245813 ATACA-AA-AAATTAAATTTACAGATACAATAAAATACAAACATTCTACAAAATTAATACACAAA
1 ATACAGAATAAATTAAATTTACACATACAAAAAAATACAAACATTCTA-AAAATTAATACACAAA
14245876 AATATAAAATTCAAACAAAAATA
65 AATATAAAATTCAAACAAAAATA
* * * * ** * * ** *
14245899 ATA-TGCACTAAATTAAACTTAAACACCCAACAAACTACAAACAGATGGGT-AAAATTAATACAT
1 ATACAG-AATAAATTAAATTTACACATACAAAAAAATACAAAC--AT-TCTAAAAATTAATACAC
* * * * *
14245962 GAAAATTTTAAATTCAAACTACATATA
62 AAAAATATAAAATTCAAAC-AAAAATA
* * *
14245989 ATACAGAATAAATTAAATTTACACATACAAAAAAATACAAATATTCTAAGAAATTAATACCCGAA
1 ATACAGAATAAATTAAATTTACACATACAAAAAAATACAAACATTCTAA-AAATTAATACACAAA
* * ** *
14246054 AATATAAAAATGAAACCTTAAATC
65 AATATAAAATTCAAA-CAAAAATA
* * * * * * *
14246078 CTAAATAACTACATTAAATTTACAAATA-TAAAAAATACAAACATTCTAAAGAAATAATACA
1 ATACAGAA-TAAATTAAATTTACACATACAAAAAAATACAAACATTCTAAA-AATTAATACA
14246139 ATTATTTTGA
Statistics
Matches: 180, Mismatches: 47, Indels: 23
0.72 0.19 0.09
Matches are distributed among these distances:
86 3 0.02
87 2 0.01
88 30 0.17
89 87 0.48
90 56 0.31
91 2 0.01
ACGTcount: A:0.57, C:0.14, G:0.04, T:0.25
Consensus pattern (87 bp):
ATACAGAATAAATTAAATTTACACATACAAAAAAATACAAACATTCTAAAAATTAATACACAAAA
ATATAAAATTCAAACAAAAATA
Found at i:14248844 original size:19 final size:19
Alignment explanation
Indices: 14248809--14248893 Score: 63
Period size: 19 Copynumber: 4.5 Consensus size: 19
14248799 ATTAGCCCAC
*
14248809 TTTTTTTTGAACTTTTTATA
1 TTTTTTTTGAAC-TTTTAAA
14248829 TTTTTTGTTGAA-TTTTAAA
1 TTTTTT-TTGAACTTTTAAA
14248848 -TTTTTTT--ACTTTTAAA
1 TTTTTTTTGAACTTTTAAA
* * *
14248864 TATTTGTAT-AATTTTTAAA
1 T-TTTTTTTGAACTTTTAAA
14248883 TTATTTTTTGA
1 TT-TTTTTTGA
14248894 CGTGATATAT
Statistics
Matches: 52, Mismatches: 6, Indels: 14
0.72 0.08 0.19
Matches are distributed among these distances:
15 1 0.02
16 7 0.13
17 2 0.04
18 11 0.21
19 19 0.37
20 7 0.13
21 5 0.10
ACGTcount: A:0.26, C:0.02, G:0.06, T:0.66
Consensus pattern (19 bp):
TTTTTTTTGAACTTTTAAA
Found at i:14257595 original size:5 final size:5
Alignment explanation
Indices: 14257586--14257619 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
14257576 AAGAAAGGAT
* *
14257586 GATTG AATTG GATTG GATTG GATTG AATTG GATT
1 GATTG GATTG GATTG GATTG GATTG GATTG GATT
14257620 TTCAATGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.41
Consensus pattern (5 bp):
GATTG
Found at i:14257605 original size:10 final size:10
Alignment explanation
Indices: 14257586--14257619 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
14257576 AAGAAAGGAT
14257586 GATTGAATTG
1 GATTGAATTG
*
14257596 GATTGGATTG
1 GATTGAATTG
14257606 GATTGAATTG
1 GATTGAATTG
14257616 GATT
1 GATT
14257620 TTCAATGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.41
Consensus pattern (10 bp):
GATTGAATTG
Found at i:14258061 original size:14 final size:15
Alignment explanation
Indices: 14258042--14258070 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
14258032 GATTATGGTG
14258042 ATATATAA-TATAAT
1 ATATATAAGTATAAT
14258056 ATATATAAGTATAAT
1 ATATATAAGTATAAT
14258071 TTTAGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.41
Consensus pattern (15 bp):
ATATATAAGTATAAT
Found at i:14262276 original size:136 final size:142
Alignment explanation
Indices: 14262113--14262384 Score: 403
Period size: 136 Copynumber: 1.9 Consensus size: 142
14262103 TGTCTTTTTA
** *
14262113 GTGTAATGATTGAGCTGTAACACAAGCTTTATGAAGGCATATGATAG-T-T-A-TTCTAATCAGC
1 GTGTAATGATTGAGCTGTAACACAAGCTTTACAAAAGCATATGATAGTTCTAATTTCTAATCAGC
14262174 ATGCTCCCAAATCTTATACTAATAAGCAAA-GGGCC-ATCTGTTTTGGGCCTTTCAATCAATTCA
66 ATGCTCCCAAATCTTATACTAATAAGCAAAGGGGCCTATCTGTTTTGGGCCTTTCAATCAATTCA
14262237 AGTTTTTGATTT
131 AGTTTTTGATTT
14262249 GTGTAATGATTGAGCTGTAACACAAGCTTTACAAAAGCATATGATAGTTATTCTAAATTTCTAAT
1 GTGTAATGATTGAGCTGTAACACAAGCTTTACAAAAGCATATGATAG---TTCT-AATTTCTAAT
* * * *
14262314 CAGCTTGCTTCCGAATCTTATACTAATAAGCAAAGGGGCCTATCTGTTTTGGGTCTTTCAATCAA
62 CAGCATGCTCCCAAATCTTATACTAATAAGCAAAGGGGCCTATCTGTTTTGGGCCTTTCAATCAA
14262379 TTCAAG
127 TTCAAG
14262385 ATGTTTATTC
Statistics
Matches: 119, Mismatches: 7, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
136 44 0.37
140 1 0.01
141 1 0.01
143 1 0.01
144 38 0.32
145 5 0.04
146 29 0.24
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (142 bp):
GTGTAATGATTGAGCTGTAACACAAGCTTTACAAAAGCATATGATAGTTCTAATTTCTAATCAGC
ATGCTCCCAAATCTTATACTAATAAGCAAAGGGGCCTATCTGTTTTGGGCCTTTCAATCAATTCA
AGTTTTTGATTT
Found at i:14269229 original size:11 final size:11
Alignment explanation
Indices: 14269186--14269231 Score: 58
Period size: 11 Copynumber: 4.1 Consensus size: 11
14269176 CCATTTTTTA
*
14269186 AATAAAATAAT
1 AATAAAATATT
14269197 AAT-AAATATCT
1 AATAAAATAT-T
14269208 AAGTAAAATATT
1 AA-TAAAATATT
14269220 AATAAAATATT
1 AATAAAATATT
14269231 A
1 A
14269232 TTTAACTAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
10 5 0.16
11 16 0.52
12 4 0.13
13 6 0.19
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (11 bp):
AATAAAATATT
Found at i:14274777 original size:3 final size:3
Alignment explanation
Indices: 14274769--14274812 Score: 61
Period size: 3 Copynumber: 14.7 Consensus size: 3
14274759 TAATCATTAA
* * *
14274769 AAT AAT AAT AAT AAT AAT TAT ATT AAC AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
14274813 AATTTTTATT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:14274782 original size:21 final size:21
Alignment explanation
Indices: 14274753--14274815 Score: 65
Period size: 24 Copynumber: 2.9 Consensus size: 21
14274743 TTTTCACTTT
* *
14274753 TAATTATAATCATTAAAATAA
1 TAATAATAATAATTAAAATAA
*
14274774 TAATAATAATAATTATATTAACAA
1 TAATAATAATAATTA-A--AATAA
14274798 TAATAATAATAA-TAAAAT
1 TAATAATAATAATTAAAAT
14274816 TTTTATTCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
20 2 0.06
21 13 0.37
22 2 0.06
23 2 0.06
24 16 0.46
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (21 bp):
TAATAATAATAATTAAAATAA
Found at i:14275638 original size:5 final size:5
Alignment explanation
Indices: 14275630--14275689 Score: 61
Period size: 5 Copynumber: 12.2 Consensus size: 5
14275620 TTTTTCACTT
* * * *
14275630 ATATA ATATA ACACA ATACA ATATA ATATA ATATA ATAT- ATAATA AAATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
14275680 ATAT- ATATA A
1 ATATA ATATA A
14275690 AGCATAAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
4 6 0.13
5 39 0.85
6 1 0.02
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (5 bp):
ATATA
Found at i:14283122 original size:48 final size:48
Alignment explanation
Indices: 14283051--14283150 Score: 173
Period size: 48 Copynumber: 2.1 Consensus size: 48
14283041 TTATTTCTCT
* *
14283051 AATGTGTGATAAATGCGTTAGTTTCCAAAACTCAGTGAATAAGTAAAA
1 AATGTGTGATAAATGCGTAAGTTTCCAAAACCCAGTGAATAAGTAAAA
*
14283099 AATGTGTGATAAATGCGTAAGTTTCCAAAACCCAGTGAATAAGTATAA
1 AATGTGTGATAAATGCGTAAGTTTCCAAAACCCAGTGAATAAGTAAAA
14283147 AATG
1 AATG
14283151 CAAGAAAATT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.42, C:0.11, G:0.19, T:0.28
Consensus pattern (48 bp):
AATGTGTGATAAATGCGTAAGTTTCCAAAACCCAGTGAATAAGTAAAA
Found at i:14285371 original size:30 final size:30
Alignment explanation
Indices: 14285327--14285389 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
14285317 ACTTGACAAG
*
14285327 CAAATGCCTCTAAAATAATAATAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
* *
14285357 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
14285387 CAA
1 CAA
14285390 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:14296018 original size:20 final size:20
Alignment explanation
Indices: 14295993--14296030 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14295983 TTAGTCAATT
*
14295993 TTTAATTAAAAAATATTTAA
1 TTTAATCAAAAAATATTTAA
*
14296013 TTTAATCAAAAAGTATTT
1 TTTAATCAAAAAATATTT
14296031 TTAAATTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (20 bp):
TTTAATCAAAAAATATTTAA
Found at i:14296560 original size:40 final size:40
Alignment explanation
Indices: 14296489--14296564 Score: 98
Period size: 40 Copynumber: 1.9 Consensus size: 40
14296479 AATTTTAGTC
* * *
14296489 ATTATTTTACTCACCCTGCTTACCATATAAAATTATCACA
1 ATTATTTTACTCACCCTACTCACCAGATAAAATTATCACA
* * *
14296529 ATTATTTTATTCACCCTACTCATCAGGTAAAATTAT
1 ATTATTTTACTCACCCTACTCACCAGATAAAATTAT
14296565 ATATATATAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 30 1.00
ACGTcount: A:0.34, C:0.22, G:0.04, T:0.39
Consensus pattern (40 bp):
ATTATTTTACTCACCCTACTCACCAGATAAAATTATCACA
Found at i:14302082 original size:26 final size:27
Alignment explanation
Indices: 14302048--14302098 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
14302038 AATTTCTATT
*
14302048 TTAACATTTA-AACAATATTTTGTATAA
1 TTAACATTTATAAAAATA-TTTGTATAA
14302075 TTAA-ATTTATAAAAATATTTGTAT
1 TTAACATTTATAAAAATATTTGTAT
14302099 TAAATAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (27 bp):
TTAACATTTATAAAAATATTTGTATAA
Found at i:14307831 original size:15 final size:15
Alignment explanation
Indices: 14307808--14307844 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
14307798 TAAATTTTTT
14307808 TGTAAAATTCTAAAA
1 TGTAAAATTCTAAAA
*
14307823 TGTATAATTCTAAAA
1 TGTAAAATTCTAAAA
*
14307838 TTTAAAA
1 TGTAAAA
14307845 AGTCAAAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.38
Consensus pattern (15 bp):
TGTAAAATTCTAAAA
Found at i:14307937 original size:10 final size:10
Alignment explanation
Indices: 14307922--14307950 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
14307912 TTTTAAATTT
14307922 TTATATATTA
1 TTATATATTA
14307932 TTATATATTA
1 TTATATATTA
14307942 TTATATATT
1 TTATATATT
14307951 TTAGAACTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATATATTA
Found at i:14310024 original size:19 final size:19
Alignment explanation
Indices: 14309980--14310025 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
14309970 CGAGTACACC
*
14309980 AATAGAAGCTCGAAAGCTG
1 AATAGAAGCTCGAAAGCTA
* *
14309999 AACAGAAGCTCGTAAGCTA
1 AATAGAAGCTCGAAAGCTA
14310018 AATAGAAG
1 AATAGAAG
14310026 GTTGTAAGAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.46, C:0.15, G:0.24, T:0.15
Consensus pattern (19 bp):
AATAGAAGCTCGAAAGCTA
Found at i:14310555 original size:17 final size:16
Alignment explanation
Indices: 14310535--14310582 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
14310525 CTTAATTAGT
14310535 TAATCTATCAAATTAA
1 TAATCTATCAAATTAA
* *
14310551 CTAATTTTCTCAAATTAA
1 -TAA-TCTATCAAATTAA
14310569 TAATCTATCCAAAT
1 TAATCTAT-CAAAT
14310583 ATTCTAGGTC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 3 0.12
17 11 0.44
18 11 0.44
ACGTcount: A:0.44, C:0.17, G:0.00, T:0.40
Consensus pattern (16 bp):
TAATCTATCAAATTAA
Found at i:14316899 original size:18 final size:17
Alignment explanation
Indices: 14316864--14316897 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
14316854 TTATTTTGAA
14316864 AAAATTTTCAAATATAT
1 AAAATTTTCAAATATAT
*
14316881 AAAATTTT-AAATTTAT
1 AAAATTTTCAAATATAT
14316897 A
1 A
14316898 TATATTCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (17 bp):
AAAATTTTCAAATATAT
Found at i:14326605 original size:18 final size:20
Alignment explanation
Indices: 14326584--14326622 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
14326574 AAATAATTAA
14326584 TAAA-AATCGTTTTAA-ATT
1 TAAAGAATCGTTTTAATATT
*
14326602 TAAAGAATTGTTTTAATATT
1 TAAAGAATCGTTTTAATATT
14326622 T
1 T
14326623 GGATAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 10 0.56
20 4 0.22
ACGTcount: A:0.41, C:0.03, G:0.08, T:0.49
Consensus pattern (20 bp):
TAAAGAATCGTTTTAATATT
Found at i:14327006 original size:2 final size:2
Alignment explanation
Indices: 14326999--14327023 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14326989 TAGTGCATTA
14326999 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
14327024 ATTCAATTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14327962 original size:19 final size:17
Alignment explanation
Indices: 14327938--14327980 Score: 59
Period size: 19 Copynumber: 2.4 Consensus size: 17
14327928 TCTTTTTTGA
14327938 TTTTTTTCTATTTCAACT
1 TTTTTTTCTATTTC-ACT
*
14327956 GTTTTTTTCTGTTTCACT
1 -TTTTTTTCTATTTCACT
14327974 TTTTTTT
1 TTTTTTT
14327981 AAAATTCTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.30
18 3 0.13
19 13 0.57
ACGTcount: A:0.09, C:0.14, G:0.05, T:0.72
Consensus pattern (17 bp):
TTTTTTTCTATTTCACT
Found at i:14328761 original size:4 final size:4
Alignment explanation
Indices: 14328752--14328790 Score: 78
Period size: 4 Copynumber: 9.8 Consensus size: 4
14328742 GTTAGCTATA
14328752 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
14328791 ATCCAGTATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:14333365 original size:23 final size:22
Alignment explanation
Indices: 14333321--14333363 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
14333311 ACATATGCAC
*
14333321 ATACTTACATTTTTATTTTATA
1 ATACTTAAATTTTTATTTTATA
*
14333343 ATACTTAAAGTTTT-TTTTATA
1 ATACTTAAATTTTTATTTTATA
14333364 TATGTATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (22 bp):
ATACTTAAATTTTTATTTTATA
Done.