Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 42 of 240
Found at i:14691062 original size:18 final size:17
Alignment explanation
Indices: 14691034--14691068 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14691024 ATTATTAAAA
*
14691034 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
14691051 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
14691069 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:14691319 original size:45 final size:44
Alignment explanation
Indices: 14691230--14691324 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 44
14691220 TTACACCTCT
*
14691230 ATTACATTCAACCAAACACATTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACACATTTTTACTATTACACCTCTATTCC
* *
14691274 ATTACATTCAACCAAACA-GTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACACATT--TTTACTATTACACCTCTATTCC
14691319 ATTACA
1 ATTACA
14691325 CCTATAATCC
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
43 2 0.04
44 18 0.39
45 26 0.57
ACGTcount: A:0.33, C:0.27, G:0.04, T:0.36
Consensus pattern (44 bp):
ATTACATTCAACCAAACACATTTTTACTATTACACCTCTATTCC
Found at i:14691324 original size:16 final size:16
Alignment explanation
Indices: 14691305--14691372 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
14691295 GATTTGCTAT
* *
14691305 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
*
14691321 TACACCTATAATCCAA
1 TACACCTCTAATCCAA
14691337 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
14691353 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
14691369 TACA
1 TACA
14691373 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.37, C:0.35, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:14699150 original size:17 final size:17
Alignment explanation
Indices: 14699124--14699157 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14699114 TAAGAAATCT
14699124 TAAATTT-AAAATAATA
1 TAAATTTAAAAATAATA
14699140 TAAATTTTAAAAATAATA
1 TAAA-TTTAAAAATAATA
14699158 ATATGAACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 3 0.19
18 9 0.56
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TAAATTTAAAAATAATA
Found at i:14707324 original size:30 final size:30
Alignment explanation
Indices: 14707261--14707324 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
14707251 ATGTTAATGG
*
14707261 GTGATTGATTTGTCACTTTTCGATACGTTA
1 GTGATTGATTTGTCACTTTTCGATAAGTTA
* *
14707291 GTGATTGATTTGTTATTTTTCGA-AAGTTGA
1 GTGATTGATTTGTCACTTTTCGATAAGTT-A
14707321 GTGA
1 GTGA
14707325 CTAAATTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 4 0.13
30 26 0.87
ACGTcount: A:0.22, C:0.08, G:0.23, T:0.47
Consensus pattern (30 bp):
GTGATTGATTTGTCACTTTTCGATAAGTTA
Found at i:14707692 original size:15 final size:17
Alignment explanation
Indices: 14707672--14707704 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
14707662 TTATTTTTAA
14707672 AAATATA-TAA-AATAT
1 AAATATAGTAAGAATAT
14707687 AAATATAGTAAGAATAT
1 AAATATAGTAAGAATAT
14707704 A
1 A
14707705 TAAATTTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 3 0.19
17 6 0.38
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (17 bp):
AAATATAGTAAGAATAT
Found at i:14708991 original size:30 final size:31
Alignment explanation
Indices: 14708945--14709008 Score: 103
Period size: 30 Copynumber: 2.1 Consensus size: 31
14708935 TTTTATTATG
14708945 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATATCTCGATACCCATATCTTTGACTTT
* *
14708976 CCAATAT-TTGATACCCATATCTTTGATTTT
1 CCAATATCTCGATACCCATATCTTTGACTTT
14709006 CCA
1 CCA
14709009 TAAATATGGA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 24 0.77
31 7 0.23
ACGTcount: A:0.27, C:0.27, G:0.06, T:0.41
Consensus pattern (31 bp):
CCAATATCTCGATACCCATATCTTTGACTTT
Found at i:14709000 original size:15 final size:15
Alignment explanation
Indices: 14708955--14709002 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
14708945 CCAATATCTC
14708955 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
14708970 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
14708985 GATACCCATATCTTT
1 GATACCCATATCTTT
14709000 GAT
1 GAT
14709003 TTTCCATAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
14 4 0.16
15 17 0.68
16 4 0.16
ACGTcount: A:0.27, C:0.23, G:0.08, T:0.42
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:14713623 original size:30 final size:30
Alignment explanation
Indices: 14713579--14713669 Score: 148
Period size: 30 Copynumber: 3.0 Consensus size: 30
14713569 TTTATTATGC
*
14713579 CAATATCTCGATACCCATATCTTTGACTTTT
1 CAATAT-TTGATACCCATATCTTTGACTTTT
*
14713610 CAATATTTGATACCCATATCTTTGACTTTC
1 CAATATTTGATACCCATATCTTTGACTTTT
14713640 CAATATTTGATACCCATATCTTTGA-TTTT
1 CAATATTTGATACCCATATCTTTGACTTTT
14713669 C
1 C
14713670 CATAAATATG
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
29 4 0.07
30 47 0.82
31 6 0.11
ACGTcount: A:0.26, C:0.23, G:0.07, T:0.44
Consensus pattern (30 bp):
CAATATTTGATACCCATATCTTTGACTTTT
Found at i:14713633 original size:15 final size:15
Alignment explanation
Indices: 14713588--14713665 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
14713578 CCAATATCTC
14713588 GATACCCATATCTTT
1 GATACCCATATCTTT
*** *
14713603 GACTTTTCA-ATATTT
1 GA-TACCCATATCTTT
14713618 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
14713633 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
14713648 GATACCCATATCTTT
1 GATACCCATATCTTT
14713663 GAT
1 GAT
14713666 TTTCCATAAA
Statistics
Matches: 45, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
14 7 0.16
15 31 0.69
16 7 0.16
ACGTcount: A:0.27, C:0.22, G:0.08, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:14714947 original size:22 final size:22
Alignment explanation
Indices: 14714908--14714949 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
14714898 CAAAGCTCAT
* *
14714908 TTATATTTGATGATAATTAAAA
1 TTATATTTGATAACAATTAAAA
*
14714930 TTATATTTTATAACAATTAA
1 TTATATTTGATAACAATTAA
14714950 CAAGGAAGTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (22 bp):
TTATATTTGATAACAATTAAAA
Found at i:14716524 original size:3 final size:3
Alignment explanation
Indices: 14716516--14716547 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
14716506 GCACATGAAT
14716516 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
14716548 GATACAAGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:14717032 original size:23 final size:22
Alignment explanation
Indices: 14716987--14717080 Score: 67
Period size: 19 Copynumber: 4.5 Consensus size: 22
14716977 AAAAGGTATC
* *
14716987 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
*
14717008 TACAAAATCATATCTTCTAATAT
1 TAC-AAATCATATCTTCTAAGAT
*
14717031 TACATATCATA---TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
* *
14717050 TGCATATCATA---TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
*
14717069 TACATATCATAT
1 TACAAATCATAT
14717081 ATAATATTGC
Statistics
Matches: 63, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
19 35 0.56
21 3 0.05
22 15 0.24
23 10 0.16
ACGTcount: A:0.43, C:0.16, G:0.04, T:0.37
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:14717055 original size:19 final size:19
Alignment explanation
Indices: 14717000--14717097 Score: 106
Period size: 19 Copynumber: 4.9 Consensus size: 19
14716990 AAATTAAATC
*
14717000 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
*
14717020 TCTTCTAATATTACATATCATA
1 ---TCTAAGATTACATATCATA
*
14717042 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
14717061 TCTAAGATTACATATCATA
1 TCTAAGATTACATATCATA
* * *
14717080 TATAATATTGCATATCAT
1 TCTAAGATTACATATCAT
14717098 TGAAGATTAT
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
19 50 0.75
22 7 0.10
23 10 0.15
ACGTcount: A:0.41, C:0.15, G:0.05, T:0.39
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:14717071 original size:38 final size:37
Alignment explanation
Indices: 14717016--14717106 Score: 123
Period size: 38 Copynumber: 2.5 Consensus size: 37
14717006 ATTACAAAAT
* *
14717016 CATATC-TTCTAATATTACATATCATATCTAAGATTG
1 CATATCATTCTAAGATTACATATCATATATAAGATTG
*
14717052 CATATCATATCTAAGATTACATATCATATATAATATTG
1 CATATCAT-TCTAAGATTACATATCATATATAAGATTG
*
14717090 CATATCATT-GAAGATTA
1 CATATCATTCTAAGATTA
14717107 TGTTTCCATA
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
36 13 0.27
37 2 0.04
38 34 0.69
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.40
Consensus pattern (37 bp):
CATATCATTCTAAGATTACATATCATATATAAGATTG
Found at i:14719181 original size:112 final size:112
Alignment explanation
Indices: 14719061--14719571 Score: 697
Period size: 112 Copynumber: 4.6 Consensus size: 112
14719051 TTCTGACACG
14719061 AAATTTTTTTTCTTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTT
1 AAATTTTTTTTCTTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTT
*
14719126 TTTAAATTTTTTCGTATTTTTTATCTGATTCTGACACG-AAAAAAAT
66 TTTAATTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAAT
*
14719172 AATTTTTTTTTCTTTGTACT-CTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAA----
1 AAATTTTTTTTCTTTGTACTGC-GTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTT
*
14719232 -TTT--TTTTTTTCGTATTTTTTATCTGATTTTGACACGAAAAAAAAT
65 TTTTAATTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAAT
* *
14719277 AAATTTTTTTTCTTTGTACTGCGTACTGGGTGTCGGCCATTGACAGGCCAGCATCCAAAA-TTTT
1 AAATTTTTTTTCTTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTT
14719341 TTTAATTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAAAT
66 TTTAATTTTTTTCGTA-TTTTTTATCTGATTCTGACACGAAAAAAAAT
* * * *
14719389 AATTTTTTTTTCTTTGTACTGTGTACTGGGTGCCGGCCATTGATAGGCCAACACCCAAAATTTTT
1 AAATTTTTTTTCTTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAA---TT
*
14719454 TTTTTTTATTTTTTTCGTA-TTTTTATCTGATTCTGACACGAAAAACAAAAAT
63 TTTTTTAATTTTTTTCGTATTTTTTATCTGATTCTGACACG--AAA-AAAAAT
********
14719506 AAA--AAAAAAAATTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTT
1 AAATTTTTTTTCTTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTT
14719569 TTT
66 TTT
14719572 TTGTTTTTTC
Statistics
Matches: 357, Mismatches: 26, Indels: 33
0.86 0.06 0.08
Matches are distributed among these distances:
104 31 0.09
105 63 0.18
106 4 0.01
109 3 0.01
110 1 0.00
111 68 0.19
112 92 0.26
114 21 0.06
115 44 0.12
116 22 0.06
117 8 0.02
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (112 bp):
AAATTTTTTTTCTTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTT
TTTAATTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAAT
Found at i:14719364 original size:216 final size:216
Alignment explanation
Indices: 14719061--14719467 Score: 719
Period size: 216 Copynumber: 1.9 Consensus size: 216
14719051 TTCTGACACG
14719061 AAATTTTTTTTCTTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTT
1 AAATTTTTTTTCTTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTT
14719126 TTTAAATTTTTTCGTATTTTTTATCTGATTCTGACACG-AAAAAAATAATTTTTTTTTCTTTGTA
66 TTTAAATTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAATAATTTTTTTTTCTTTGTA
*
14719190 CTCTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTTCGTATTTTTTATC
131 CTCTGTACTGGGTGCCGGCCATTGACAGGCCAACACCCAAAATTTTTTTTTT-GTATTTTTTATC
14719255 TGATTTTGACACGAAAAAAAAT
195 TGATTTTGACACGAAAAAAAAT
* *
14719277 AAATTTTTTTTCTTTGTACTGCGTACTGGGTGTCGGCCATTGACAGGCCAGCATCCAAAA-TTTT
1 AAATTTTTTTTCTTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTT
*
14719341 TTTAATTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAAATAATTTTTTTTTCTTTGT
66 TTTAAATTTTTTCGTA-TTTTTTATCTGATTCTGACACGAAAAAAAATAATTTTTTTTTCTTTGT
* * *
14719406 ACTGTGTACTGGGTGCCGGCCATTGATAGGCCAACACCCAAAATTTTTTTTTTTTATTTTTT
130 ACTCTGTACTGGGTGCCGGCCATTGACAGGCCAACACCCAAAATTTTTTTTTTGTATTTTTT
14719468 TCGTATTTTT
Statistics
Matches: 182, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
215 19 0.10
216 88 0.48
217 75 0.41
ACGTcount: A:0.24, C:0.17, G:0.15, T:0.43
Consensus pattern (216 bp):
AAATTTTTTTTCTTTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTT
TTTAAATTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAATAATTTTTTTTTCTTTGTA
CTCTGTACTGGGTGCCGGCCATTGACAGGCCAACACCCAAAATTTTTTTTTTGTATTTTTTATCT
GATTTTGACACGAAAAAAAAT
Found at i:14719537 original size:115 final size:114
Alignment explanation
Indices: 14719290--14719591 Score: 353
Period size: 115 Copynumber: 2.6 Consensus size: 114
14719280 TTTTTTTTCT
* * *
14719290 TTGTACTGCGTACTGGGTGTCGGCCATTGACAGGCCAGCATCCAAAA----TTTTTTTAATTTTT
1 TTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTTTTATTTTT
**********
14719351 TTCGTATTTTTTTATCTGATTCTGACACGAAAAAAAATAATTTTTTTTTCT
66 TTCGTA--TTTTTATCTGATTCTGACACGAAAAAAAATAATAAAAAAAAAA
* * *
14719402 TTGTACTGTGTACTGGGTGCCGGCCATTGATAGGCCAACACCCAAAATTTTTTTTTTTTATTTTT
1 TTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTTTTATTTTT
14719467 TTCGTATTTTTATCTGATTCTGACACGAAAAACAAA-AATAAAAAAAAAAA
66 TTCGTATTTTTATCTGATTCTGACACGAAAAA-AAATAAT-AAAAAAAAAA
*
14719517 TTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTTGTTTTTTC
1 TTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAA-TTTTTTTTT-TTTATT-
14719582 TTTTTCGTAT
63 TTTTTCGTAT
14719592 ATCCGTATTT
Statistics
Matches: 161, Mismatches: 20, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
112 42 0.26
114 29 0.18
115 47 0.29
116 28 0.17
117 5 0.03
118 10 0.06
ACGTcount: A:0.26, C:0.17, G:0.16, T:0.41
Consensus pattern (114 bp):
TTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTTTTATTTTT
TTCGTATTTTTATCTGATTCTGACACGAAAAAAAATAATAAAAAAAAAA
Found at i:14719625 original size:115 final size:112
Alignment explanation
Indices: 14719402--14719614 Score: 255
Period size: 115 Copynumber: 1.8 Consensus size: 112
14719392 TTTTTTTTCT
* *
14719402 TTGTACTGTGTACTGGGTGCCGGCCATTGATAGGCCAACACCCAAAATTTTTTTTTTTTATTTTT
1 TTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAACACCCAAAATTTTTTTTTTTTATTTTT
** * * *
14719467 TTCGTATTTTTATCTGATTCTGACACGAAAAACAAAAATAAAAAAAAAAA
66 TTCGTATTCGTATCTCAGTATGACAC---AAACAAAAATAAAAAAAAAAA
* *
14719517 TTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTTGTTTTTTC
1 TTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAACACCCAAAA-TTTTTTTTT-TTTATT-
* *
14719582 TTTTTCGTATATCCGTATTTCAGTATTACACAA
63 TTTTTCGTAT-T-CGTATCTCAGTATGACACAA
14719615 TTTAAAAAAA
Statistics
Matches: 82, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
115 44 0.54
116 9 0.11
117 7 0.09
118 10 0.12
119 1 0.01
120 11 0.13
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (112 bp):
TTGTACTGCGTACTGGGTGCCGGCCATTGACAGGCCAACACCCAAAATTTTTTTTTTTTATTTTT
TTCGTATTCGTATCTCAGTATGACACAAACAAAAATAAAAAAAAAAA
Found at i:14720378 original size:20 final size:21
Alignment explanation
Indices: 14720343--14720383 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
14720333 TCATGTAATC
* *
14720343 ATTCTTTTGTAATTTTTTATT
1 ATTCTTTTGAAATTTTATATT
14720364 ATTCTTTT-AAATTTTATATT
1 ATTCTTTTGAAATTTTATATT
14720384 GATGTTACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.68
Consensus pattern (21 bp):
ATTCTTTTGAAATTTTATATT
Found at i:14724313 original size:21 final size:22
Alignment explanation
Indices: 14724289--14724332 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
14724279 TTATATATTC
14724289 TTTAGAAATT-TTTTAAAAAAT
1 TTTAGAAATTCTTTTAAAAAAT
* *
14724310 TTTATAATTTCTTTTAAAAAAT
1 TTTAGAAATTCTTTTAAAAAAT
14724332 T
1 T
14724333 AAATCTTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (22 bp):
TTTAGAAATTCTTTTAAAAAAT
Found at i:14724369 original size:23 final size:23
Alignment explanation
Indices: 14724299--14724370 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
14724289 TTTAGAAATT
* * *
14724299 TTTTAAAAAATT-TTATAATTTC
1 TTTTAAAAAATTATTTTGATTTA
14724321 TTTTAAAAAATTAAATCTTTGA---A
1 TTTTAAAAAATT--AT-TTTGATTTA
14724344 TTTTAAAAAATTATTTTGATTTA
1 TTTTAAAAAATTATTTTGATTTA
14724367 TTTT
1 TTTT
14724371 GTAATTTTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 13
0.71 0.05 0.23
Matches are distributed among these distances:
20 5 0.12
21 2 0.05
22 12 0.30
23 17 0.43
25 1 0.03
26 3 0.08
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.54
Consensus pattern (23 bp):
TTTTAAAAAATTATTTTGATTTA
Found at i:14736827 original size:13 final size:13
Alignment explanation
Indices: 14736792--14736829 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
14736782 ACCCATTAAG
14736792 ATATAATTAAAAA
1 ATATAATTAAAAA
14736805 AT-T-ATGTAAAAA
1 ATATAAT-TAAAAA
14736817 ATATAATTAAAAA
1 ATATAATTAAAAA
14736830 TTATTTTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
11 2 0.09
12 9 0.41
13 9 0.41
14 2 0.09
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (13 bp):
ATATAATTAAAAA
Found at i:14741029 original size:271 final size:271
Alignment explanation
Indices: 14740546--14741098 Score: 953
Period size: 271 Copynumber: 2.0 Consensus size: 271
14740536 CTGCAGCAGT
* * *
14740546 AGCACTTGAACTTGTCCTATAAGAAAAATAACCAAAAGTGGAAACATTATAAAGAAGTTAAACCA
1 AGCACTTGAACTCGTCCTATAAGAAAAACAAACAAAAGTGGAAACATTATAAAGAAGTTAAACCA
*
14740611 AAAACTATTTCATACATTCAATAAGAAATTTAACAACATTTTTATTGAAGACTTCTTAAAGAATA
66 AAAACTATTTCATACATTCAATAAGAAATTTAACAACATTTTTATTGAAGACTGCTTAAAGAATA
* * *
14740676 TAGAAGAAATAATAACATTTTTAGTAAAGAAATACAGAGACGATAATAACATGCACAAGGGTGCT
131 TAGAAGAAACAATAACATTTTTAGTAAAGAAATACAGAGACGATAATAACAAGCACAAGGATGCT
14740741 ACCCTGTAAACAGTAAAGAGGTACAAAGGAATAGTTCCTATAGTCTAAAACATCAAAAGGCTCTA
196 ACCCTGTAAACAGTAAAGAGGTACAAAGGAATAGTTCCTATAGTCTAAAACATCAAAAGGCTCTA
14740806 AAAATGTTTCA
261 AAAATGTTTCA
* * **
14740817 AGCACTTGAACTCGTCCTATAAGAAAAACAAACAAAAGTGGAGACATTATACAGAAGTTATGCCA
1 AGCACTTGAACTCGTCCTATAAGAAAAACAAACAAAAGTGGAAACATTATAAAGAAGTTAAACCA
* * *
14740882 AAAACTATTTTATACATTCAATAAGAAATTTCACAACATTTTTATTGAAGACTGCTTAAAGAATT
66 AAAACTATTTCATACATTCAATAAGAAATTTAACAACATTTTTATTGAAGACTGCTTAAAGAATA
* *
14740947 TAGAAGAAACAATACCATTTTTAGTAAAGAAATACAGAGACGATACTAACAAGCACAAGGATGCT
131 TAGAAGAAACAATAACATTTTTAGTAAAGAAATACAGAGACGATAATAACAAGCACAAGGATGCT
14741012 ACCCTGTAAACAGTAAAGAGGTACAAAGGAATAGTTCCTATAGTCTAAAACATCAAAAGGCTCTA
196 ACCCTGTAAACAGTAAAGAGGTACAAAGGAATAGTTCCTATAGTCTAAAACATCAAAAGGCTCTA
14741077 AAAATGTTTCA
261 AAAATGTTTCA
*
14741088 AGCACTAGAAC
1 AGCACTTGAAC
14741099 CTCCAAAAAT
Statistics
Matches: 265, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
271 265 1.00
ACGTcount: A:0.46, C:0.15, G:0.14, T:0.25
Consensus pattern (271 bp):
AGCACTTGAACTCGTCCTATAAGAAAAACAAACAAAAGTGGAAACATTATAAAGAAGTTAAACCA
AAAACTATTTCATACATTCAATAAGAAATTTAACAACATTTTTATTGAAGACTGCTTAAAGAATA
TAGAAGAAACAATAACATTTTTAGTAAAGAAATACAGAGACGATAATAACAAGCACAAGGATGCT
ACCCTGTAAACAGTAAAGAGGTACAAAGGAATAGTTCCTATAGTCTAAAACATCAAAAGGCTCTA
AAAATGTTTCA
Found at i:14744658 original size:9 final size:9
Alignment explanation
Indices: 14744644--14744668 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
14744634 ATAATATTAA
14744644 ATTTTATTT
1 ATTTTATTT
14744653 ATTTTATTT
1 ATTTTATTT
14744662 ATTTTAT
1 ATTTTAT
14744669 CTCCTTCTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (9 bp):
ATTTTATTT
Found at i:14748367 original size:18 final size:18
Alignment explanation
Indices: 14748344--14748393 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
14748334 TTTGGTTAAA
14748344 AATTAACCGAATTACCCG
1 AATTAACCGAATTACCCG
* *
14748362 AATTAACTGAATTACCTG
1 AATTAACCGAATTACCCG
*
14748380 AATTACCCGAATTA
1 AATTAACCGAATTA
14748394 ACCAAATTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (18 bp):
AATTAACCGAATTACCCG
Found at i:14748375 original size:27 final size:27
Alignment explanation
Indices: 14748344--14748395 Score: 88
Period size: 27 Copynumber: 1.9 Consensus size: 27
14748334 TTTGGTTAAA
14748344 AATTAACC-GAATTACCCGAATTAACTG
1 AATT-ACCTGAATTACCCGAATTAACTG
14748371 AATTACCTGAATTACCCGAATTAAC
1 AATTACCTGAATTACCCGAATTAAC
14748396 CAAATTGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 3 0.12
27 21 0.88
ACGTcount: A:0.40, C:0.23, G:0.10, T:0.27
Consensus pattern (27 bp):
AATTACCTGAATTACCCGAATTAACTG
Found at i:14748401 original size:9 final size:9
Alignment explanation
Indices: 14748344--14748401 Score: 64
Period size: 9 Copynumber: 6.4 Consensus size: 9
14748334 TTTGGTTAAA
14748344 AATTAACCG
1 AATTAACCG
*
14748353 AATTACCCG
1 AATTAACCG
*
14748362 AATTAACTG
1 AATTAACCG
14748371 AATT-ACCTG
1 AATTAACC-G
*
14748380 AATTACCCG
1 AATTAACCG
*
14748389 AATTAACCA
1 AATTAACCG
14748398 AATT
1 AATT
14748402 GAATCATACA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
8 2 0.05
9 36 0.90
10 2 0.05
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (9 bp):
AATTAACCG
Found at i:14748401 original size:27 final size:27
Alignment explanation
Indices: 14748343--14748401 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
14748333 TTTTGGTTAA
*
14748343 AAATTAACCGAATTACCCGAATTAACT
1 AAATTAACCGAATTACCCGAATTAACC
*
14748370 GAATT-ACCTGAATTACCCGAATTAACC
1 AAATTAACC-GAATTACCCGAATTAACC
14748397 AAATT
1 AAATT
14748402 GAATCATACA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 3 0.11
27 25 0.89
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.27
Consensus pattern (27 bp):
AAATTAACCGAATTACCCGAATTAACC
Found at i:14752116 original size:26 final size:26
Alignment explanation
Indices: 14752087--14752138 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
14752077 TTTGAGCTTA
14752087 TTTTTAACCCTTATGGGTTTTCGTTC
1 TTTTTAACCCTTATGGGTTTTCGTTC
14752113 TTTTTAACCCTTATGGGTTTTCGTTC
1 TTTTTAACCCTTATGGGTTTTCGTTC
14752139 AGCTCCTACG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.12, C:0.19, G:0.15, T:0.54
Consensus pattern (26 bp):
TTTTTAACCCTTATGGGTTTTCGTTC
Found at i:14755301 original size:26 final size:27
Alignment explanation
Indices: 14755260--14755321 Score: 90
Period size: 26 Copynumber: 2.3 Consensus size: 27
14755250 TTTAAAATAC
* *
14755260 TTTTAAAATAATTTTTTTATTTTTTAT
1 TTTTAAAATAATTTTTTTAATGTTTAT
14755287 TTTTAAAATAA-TTTTTTAATGTTTAT
1 TTTTAAAATAATTTTTTTAATGTTTAT
*
14755313 TTTAAAAAT
1 TTTTAAAAT
14755322 GGGCCGAGCC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 21 0.66
27 11 0.34
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (27 bp):
TTTTAAAATAATTTTTTTAATGTTTAT
Found at i:14758917 original size:18 final size:19
Alignment explanation
Indices: 14758886--14758922 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
14758876 TTAATATTAT
14758886 TTCAAATATAAATTATATA
1 TTCAAATATAAATTATATA
*
14758905 TTCAAAT-TAAATTTTATA
1 TTCAAATATAAATTATATA
14758923 AATAATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (19 bp):
TTCAAATATAAATTATATA
Found at i:14786351 original size:19 final size:19
Alignment explanation
Indices: 14786309--14786359 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
14786299 TTAGGGTTGA
* *
14786309 GTGATTTTGGGTTTAGGTT
1 GTGATTTGGGGTTTAGATT
14786328 GTGATTTGGGGTTTATGATT
1 GTGATTTGGGGTTTA-GATT
14786348 -TGATTTAGGGGT
1 GTGATTT-GGGGT
14786360 GGTAGTGAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 20 0.71
20 8 0.29
ACGTcount: A:0.14, C:0.00, G:0.37, T:0.49
Consensus pattern (19 bp):
GTGATTTGGGGTTTAGATT
Found at i:14787648 original size:19 final size:21
Alignment explanation
Indices: 14787592--14787653 Score: 56
Period size: 24 Copynumber: 2.9 Consensus size: 21
14787582 TCTACGAATC
*
14787592 ATATCTCTAAGATTACATTTATT
1 ATATCTCTAAGATTACA--TAGT
*
14787615 ATATCTTCTACGATTACA-AGT
1 ATATC-TCTAAGATTACATAGT
*
14787636 -TATCTCTAAGATTGCATA
1 ATATCTCTAAGATTACATA
14787654 TATTTCACTT
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
19 10 0.30
20 5 0.15
21 2 0.06
23 5 0.15
24 11 0.33
ACGTcount: A:0.34, C:0.16, G:0.08, T:0.42
Consensus pattern (21 bp):
ATATCTCTAAGATTACATAGT
Found at i:14789729 original size:23 final size:23
Alignment explanation
Indices: 14789699--14789746 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
14789689 CCACCACAGT
14789699 GATGTTTACAAATATTAGCTCAC
1 GATGTTTACAAATATTAGCTCAC
14789722 GATGTTTACAAATATTAGCTCAC
1 GATGTTTACAAATATTAGCTCAC
14789745 GA
1 GA
14789747 CTCGTCTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (23 bp):
GATGTTTACAAATATTAGCTCAC
Found at i:14791887 original size:3 final size:3
Alignment explanation
Indices: 14791879--14791905 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
14791869 ATATTATACC
14791879 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
14791906 TATACTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:14792689 original size:109 final size:109
Alignment explanation
Indices: 14792498--14792945 Score: 785
Period size: 109 Copynumber: 4.1 Consensus size: 109
14792488 TACGCATACT
* *
14792498 AATATCCTTTTAAAAATCTCAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACGTGCC
1 AATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCC
14792563 CTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATAGCCA
66 CTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATAGCCA
* *
14792607 AATATCCTTTTAAAAATTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCT
1 AATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCC
14792672 CTAATGTG-TCGGGTTTCGATTTTTCTCGTTCGACCAAATAGCCA
66 CTAATGTGCT-GGGTTTCGATTTTTCTCGTTCGACCAAATAGCCA
* *
14792716 AATATCCTTTTAAAAATTTCAAAATAAGACAATGTTTTGCGTTTAGAAATTCGAGAAAACGTGCC
1 AATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCC
*
14792781 CTAATGTGCTGGGTTACGATTTTTCTCGTTCGACCAAATAGCCA
66 CTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATAGCCA
*
14792825 AATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTACGTTTGGAAATTCGAGAAAACGTGCC
1 AATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCC
14792890 CTAATGTGCTGGGTTTCGA--TTTCTCGTTCGACCAAATAGCCA
66 CTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATAGCCA
*
14792932 AATATCCTCTTAAA
1 AATATCCTTTTAAA
14792946 TCTTAATCCA
Statistics
Matches: 323, Mismatches: 14, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
107 36 0.11
108 1 0.00
109 285 0.88
110 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (109 bp):
AATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCC
CTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATAGCCA
Found at i:14803233 original size:32 final size:32
Alignment explanation
Indices: 14803192--14803255 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
14803182 GATTACACTA
14803192 GATAAACCTATAATCAAGAGTAAATAGACATC
1 GATAAACCTATAATCAAGAGTAAATAGACATC
14803224 GATAAACCTATAATCAAGAGTAAATAGACATC
1 GATAAACCTATAATCAAGAGTAAATAGACATC
14803256 TTGCGATCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.50, C:0.16, G:0.12, T:0.22
Consensus pattern (32 bp):
GATAAACCTATAATCAAGAGTAAATAGACATC
Found at i:14805440 original size:21 final size:20
Alignment explanation
Indices: 14805409--14805447 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
14805399 TTTTATAAAA
14805409 TTTTTTATATATTCTTTAGT
1 TTTTTTATATATTCTTTAGT
*
14805429 TTTTTTAGTATATTTTTTA
1 TTTTTTA-TATATTCTTTA
14805448 AAATTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.21, C:0.03, G:0.05, T:0.72
Consensus pattern (20 bp):
TTTTTTATATATTCTTTAGT
Found at i:14805454 original size:21 final size:20
Alignment explanation
Indices: 14805399--14805456 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 20
14805389 TATTATAGAG
*
14805399 TTTTATAAAATTTTTTATATA
1 TTTTTTAAAA-TTTTTATATA
* ***
14805420 TTCTTTAGTTTTTTTAGTATA
1 TTTTTTAAAATTTTTA-TATA
14805441 TTTTTTAAAATTTTTA
1 TTTTTTAAAATTTTTA
14805457 AAAAATATAA
Statistics
Matches: 27, Mismatches: 9, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
20 6 0.22
21 21 0.78
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (20 bp):
TTTTTTAAAATTTTTATATA
Found at i:14810502 original size:34 final size:33
Alignment explanation
Indices: 14810422--14810506 Score: 118
Period size: 34 Copynumber: 2.5 Consensus size: 33
14810412 ATACGGTGCC
*
14810422 TTTGTGTGGTGTAGTTATCGCTCTGTCGAGTTA
1 TTTGTGTGGTGTAGTTATCGCTCTGTCGAATTA
14810455 TTTGGTGTGGTGTAGTTATCGCTCTGTC-AATCTA
1 TTT-GTGTGGTGTAGTTATCGCTCTGTCGAAT-TA
*
14810489 TCTTGTGTAGTGTAGTTA
1 T-TTGTGTGGTGTAGTTA
14810507 CCTGTGTATT
Statistics
Matches: 47, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
33 5 0.11
34 40 0.85
35 2 0.04
ACGTcount: A:0.14, C:0.12, G:0.28, T:0.46
Consensus pattern (33 bp):
TTTGTGTGGTGTAGTTATCGCTCTGTCGAATTA
Found at i:14811310 original size:15 final size:17
Alignment explanation
Indices: 14811278--14811311 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
14811268 TTAAACTTAT
14811278 AGATGGTTATATTGGTA
1 AGATGGTTATATTGGTA
14811295 AGATGGTTA-A-TGGTA
1 AGATGGTTATATTGGTA
14811310 AG
1 AG
14811312 TGATAGAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 1 0.06
17 9 0.53
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.35
Consensus pattern (17 bp):
AGATGGTTATATTGGTA
Found at i:14814644 original size:14 final size:15
Alignment explanation
Indices: 14814625--14814656 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
14814615 AAGATAATGG
14814625 AAATTAAAGAA-AAA
1 AAATTAAAGAACAAA
14814639 AAATTAAAGAACAAA
1 AAATTAAAGAACAAA
14814654 AAA
1 AAA
14814657 AAAATTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.78, C:0.03, G:0.06, T:0.12
Consensus pattern (15 bp):
AAATTAAAGAACAAA
Found at i:14814823 original size:31 final size:29
Alignment explanation
Indices: 14814788--14814865 Score: 75
Period size: 29 Copynumber: 2.6 Consensus size: 29
14814778 TTAATAGCTC
*
14814788 AGTGACTAAAATGTTACAACACGATAACATA
1 AGTGACTAAAATGTAACAACAC-A-AACATA
* * ***
14814819 AGTGACAAAAACGTAACATTTCAAACATA
1 AGTGACTAAAATGTAACAACACAAACATA
*
14814848 AGTGACTAAAATATAACA
1 AGTGACTAAAATGTAACA
14814866 TAAGGTAAAC
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
29 21 0.55
30 1 0.03
31 16 0.42
ACGTcount: A:0.51, C:0.15, G:0.12, T:0.22
Consensus pattern (29 bp):
AGTGACTAAAATGTAACAACACAAACATA
Found at i:14818548 original size:16 final size:16
Alignment explanation
Indices: 14818526--14818564 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
14818516 CCAATTTAAG
14818526 ATTTAATTTAT-ACATA
1 ATTTAATTT-TGACATA
*
14818542 TTTTAATTTTGACATA
1 ATTTAATTTTGACATA
14818558 ATTTAAT
1 ATTTAAT
14818565 ATTTCAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 1 0.05
16 19 0.95
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (16 bp):
ATTTAATTTTGACATA
Found at i:14818830 original size:30 final size:30
Alignment explanation
Indices: 14818773--14818830 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
14818763 TACAAATGAA
* **
14818773 TCTAAATTTTTAAATTTGAAAATTAAAAAT
1 TCTAAATTCTTAAAAGTGAAAATTAAAAAT
14818803 TCTAAATTCTTAAAAGT-AAAATATAAAA
1 TCTAAATTCTTAAAAGTGAAAAT-TAAAA
14818831 TTAAAATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.38
Consensus pattern (30 bp):
TCTAAATTCTTAAAAGTGAAAATTAAAAAT
Found at i:14819868 original size:43 final size:43
Alignment explanation
Indices: 14819808--14819897 Score: 153
Period size: 43 Copynumber: 2.1 Consensus size: 43
14819798 ATGCGGGGAC
*
14819808 ACACGCTCGTGTGGCCAGGCCGTGTGACTCACACGGTCAAAAG
1 ACACACTCGTGTGGCCAGGCCGTGTGACTCACACGGTCAAAAG
* *
14819851 ACACACTCGTGTGGCCAGGTCGTGTGACTCACACGGTCAAGAG
1 ACACACTCGTGTGGCCAGGCCGTGTGACTCACACGGTCAAAAG
14819894 ACAC
1 ACAC
14819898 GCCCATGTCT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.24, C:0.30, G:0.29, T:0.17
Consensus pattern (43 bp):
ACACACTCGTGTGGCCAGGCCGTGTGACTCACACGGTCAAAAG
Found at i:14822198 original size:41 final size:41
Alignment explanation
Indices: 14822150--14822263 Score: 183
Period size: 41 Copynumber: 2.8 Consensus size: 41
14822140 ACTAGCAATT
* *
14822150 AGCCTGCTAGACGTAAAGTCCGAAATATTTCACCGGCGTCA
1 AGCCTGCTAGACGTAAAGTCTGAAATATTTCACCGGCATCA
* *
14822191 AGTCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGAAATATTTCACCGGCATCA
*
14822232 AGCCTGCTAGACGTAAAGTCTGAATTATTTCA
1 AGCCTGCTAGACGTAAAGTCTGAAATATTTCA
14822264 TTGACAATAA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 66 1.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (41 bp):
AGCCTGCTAGACGTAAAGTCTGAAATATTTCACCGGCATCA
Found at i:14827295 original size:71 final size:70
Alignment explanation
Indices: 14827169--14827320 Score: 207
Period size: 71 Copynumber: 2.1 Consensus size: 70
14827159 CTTAACACCG
* *
14827169 AATGTATATTCACTATAAACATGAATAGCCGAATGCTTATATACATATATGCTTAACAGATATTA
1 AATGTATATACACTATAAACATGAATAGCCGAATGCTTATATACATATA-GCTTAACAAATATTA
**
14827234 GCTCCA
65 GAACCA
* *
14827240 AATGTATATACACTTTGAACATGAATAGCCGAATGCATATATATACATATA-CTTAACAAATATT
1 AATGTATATACACTATAAACATGAATAGCCGAATGC-T-TATATACATATAGCTTAACAAATATT
*
14827304 ATAACCA
64 AGAACCA
14827311 AATGTATATA
1 AATGTATATA
14827321 TGTATTTATC
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
71 59 0.82
72 1 0.01
73 12 0.17
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.32
Consensus pattern (70 bp):
AATGTATATACACTATAAACATGAATAGCCGAATGCTTATATACATATAGCTTAACAAATATTAG
AACCA
Found at i:14827375 original size:35 final size:35
Alignment explanation
Indices: 14827303--14827382 Score: 88
Period size: 35 Copynumber: 2.3 Consensus size: 35
14827293 TAACAAATAT
* * * *
14827303 TATAACCAAATGTATATATGTATTTATCACCTGCA
1 TATAACCAAATGCATATATGTACTTAACACCTACA
* **
14827338 TATATCCAAATGCATATATGTACTTAACATGTACA
1 TATAACCAAATGCATATATGTACTTAACACCTACA
*
14827373 TATAATCAAA
1 TATAACCAAA
14827383 CCTATACAAA
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.41, C:0.16, G:0.07, T:0.35
Consensus pattern (35 bp):
TATAACCAAATGCATATATGTACTTAACACCTACA
Found at i:14827802 original size:41 final size:41
Alignment explanation
Indices: 14827767--14827954 Score: 229
Period size: 41 Copynumber: 4.6 Consensus size: 41
14827757 ACCGGCAATT
* *
14827767 AGCCAGTTAGACGTAAAGTCTGAAATATTTCACCGGCATCA
1 AGCCAGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
* * *
14827808 AGCCTGCTAGACATAAAGTCTGAAACATTTCACCTGCATCA
1 AGCCAGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
* * * *
14827849 AGCCTGCTAGACATAAAGT-TCGAAATATTTCTCCGGCATCA
1 AGCCAGCTAGACGTAAAGTCT-GAAACATTTCACCGGCATCA
* *
14827890 AG-CATGCTAGATGTAAAGTCTGAAACATTTCACCAGCATCA
1 AGCCA-GCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
14827931 AGCCTA-CTAGACGTAAAGTCTGAA
1 AGCC-AGCTAGACGTAAAGTCTGAA
14827955 TCATCTTACT
Statistics
Matches: 127, Mismatches: 15, Indels: 10
0.84 0.10 0.07
Matches are distributed among these distances:
40 2 0.02
41 122 0.96
42 2 0.02
43 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (41 bp):
AGCCAGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
Found at i:14827874 original size:82 final size:83
Alignment explanation
Indices: 14827774--14827954 Score: 278
Period size: 82 Copynumber: 2.2 Consensus size: 83
14827764 ATTAGCCAGT
*
14827774 TAGACGTAAAG-TCTGAAATATTTCACCGGCATCAAGCCTGCTAGACATAAAGTCTGAAACATTT
1 TAGACGTAAAGTTCTGAAATATTTCACCGGCATCAAGCATGCTAGACATAAAGTCTGAAACATTT
* *
14827838 CACCTGCATCAAGCCTGC
66 CACCAGCATCAAGCCTAC
* * **
14827856 TAGACATAAAGTTC-GAAATATTTCTCCGGCATCAAGCATGCTAGATGTAAAGTCTGAAACATTT
1 TAGACGTAAAGTTCTGAAATATTTCACCGGCATCAAGCATGCTAGACATAAAGTCTGAAACATTT
14827920 CACCAGCATCAAGCCTAC
66 CACCAGCATCAAGCCTAC
14827938 TAGACGTAAAG-TCTGAA
1 TAGACGTAAAGTTCTGAA
14827955 TCATCTTACT
Statistics
Matches: 89, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
81 2 0.02
82 85 0.96
83 2 0.02
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (83 bp):
TAGACGTAAAGTTCTGAAATATTTCACCGGCATCAAGCATGCTAGACATAAAGTCTGAAACATTT
CACCAGCATCAAGCCTAC
Found at i:14834719 original size:25 final size:25
Alignment explanation
Indices: 14834685--14834806 Score: 138
Period size: 25 Copynumber: 4.9 Consensus size: 25
14834675 ACGAGTTGTA
14834685 AACGGGAAGCTC-TGCCGAGCTGAAT
1 AACGGGAAGCTCATG-CGAGCTGAAT
* *
14834710 ATCGGGAAGCTCATGCGAGCTGTAT
1 AACGGGAAGCTCATGCGAGCTGAAT
* * *
14834735 AACAGGAAGCTCATGCGAGTTGTAT
1 AACGGGAAGCTCATGCGAGCTGAAT
* * *
14834760 AACAGAAAGCTCATGCGAGCTAAAT
1 AACGGGAAGCTCATGCGAGCTGAAT
* *
14834785 AATGGGAAGCTCATGAGAGCTG
1 AACGGGAAGCTCATGCGAGCTG
14834807 TGGTGTGTCT
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
25 80 0.98
26 2 0.02
ACGTcount: A:0.32, C:0.19, G:0.30, T:0.20
Consensus pattern (25 bp):
AACGGGAAGCTCATGCGAGCTGAAT
Found at i:14834792 original size:75 final size:74
Alignment explanation
Indices: 14834669--14834807 Score: 192
Period size: 75 Copynumber: 1.9 Consensus size: 74
14834659 ATTCATATAT
* * * *
14834669 GCTCATACGAGTTGTAAACGGGAAGCTCTGCCGAGCTGAATATCGGGAAGCTCATGCGAGCTGTA
1 GCTCATACGAGTTGTAAACAGAAAGCTCTGCCGAGCTAAATATCGGGAAGCTCATGAGAGCTGTA
14834734 TAACAGGAA
66 TAACAGGAA
*
14834743 GCTCATGCGAGTTGTATAACAGAAAGCTCATG-CGAGCTAAATAAT-GGGAAGCTCATGAGAGCT
1 GCTCATACGAGTTGTA-AACAGAAAGCTC-TGCCGAGCTAAAT-ATCGGGAAGCTCATGAGAGCT
14834806 GT
63 GT
14834808 GGTGTGTCTG
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
74 15 0.26
75 38 0.67
76 4 0.07
ACGTcount: A:0.31, C:0.19, G:0.29, T:0.22
Consensus pattern (74 bp):
GCTCATACGAGTTGTAAACAGAAAGCTCTGCCGAGCTAAATATCGGGAAGCTCATGAGAGCTGTA
TAACAGGAA
Found at i:14840981 original size:24 final size:24
Alignment explanation
Indices: 14840954--14841010 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
14840944 AAGCCTAATT
*
14840954 CTAATCAATATAAAATATATTATG
1 CTAATAAATATAAAATATATTATG
* * *
14840978 CTAATAAATGTTAAATATATTATA
1 CTAATAAATATAAAATATATTATG
*
14841002 CTACTAAAT
1 CTAATAAAT
14841011 CTTCTAGAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.49, C:0.09, G:0.04, T:0.39
Consensus pattern (24 bp):
CTAATAAATATAAAATATATTATG
Found at i:14841075 original size:35 final size:35
Alignment explanation
Indices: 14841029--14841097 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
14841019 AAGAAAATAT
14841029 ATTTTGTTTAACTT-AGCTTGCAAGCAATCTCTTAG
1 ATTTTGTTTAACTTGA-CTTGCAAGCAATCTCTTAG
14841064 ATTTTGTTTAACTTGACTTGCAAGCAATCTCTTA
1 ATTTTGTTTAACTTGACTTGCAAGCAATCTCTTA
14841098 AAATTTGGGT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
35 32 0.97
36 1 0.03
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.43
Consensus pattern (35 bp):
ATTTTGTTTAACTTGACTTGCAAGCAATCTCTTAG
Found at i:14846624 original size:40 final size:41
Alignment explanation
Indices: 14846561--14846659 Score: 105
Period size: 40 Copynumber: 2.5 Consensus size: 41
14846551 GATAAAGCAG
***
14846561 GAAAACGCTTCCCCAAGGACGCGC-TT-TATCCACGTGGAC
1 GAAAACGCTTCCTTGAGGACGCGCTTTGTATCCACGTGGAC
* *
14846600 AGAAAACGCTTCCTTGAGGGCGCGCTTTGTGTCCACGTGGAC
1 -GAAAACGCTTCCTTGAGGACGCGCTTTGTATCCACGTGGAC
* *
14846642 -AAAGCACTTCCTTGAGGA
1 GAAAACGCTTCCTTGAGGA
14846660 AGCACTTTCC
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
40 35 0.71
41 2 0.04
42 12 0.24
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (41 bp):
GAAAACGCTTCCTTGAGGACGCGCTTTGTATCCACGTGGAC
Found at i:14846825 original size:17 final size:17
Alignment explanation
Indices: 14846803--14846850 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
14846793 TAATTAAATT
*
14846803 AATTATAAATTTTAAAA
1 AATTATAAATTATAAAA
*
14846820 AATTATAAATTATAAATT
1 AATTATAAATTATAAA-A
*
14846838 ATTTATAAATTAT
1 AATTATAAATTAT
14846851 TTATTAAGTC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 15 0.56
18 12 0.44
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
AATTATAAATTATAAAA
Found at i:14846856 original size:18 final size:18
Alignment explanation
Indices: 14846797--14846850 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 18
14846787 GTTTCTTAAT
* *
14846797 TAAATTAATTATAAATTT
1 TAAATTATTTATAAATTA
* *
14846815 TAAA-AAATTATAAATTA
1 TAAATTATTTATAAATTA
14846832 TAAATTATTTATAAATTA
1 TAAATTATTTATAAATTA
14846850 T
1 T
14846851 TTATTAAGTC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
17 15 0.48
18 16 0.52
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
TAAATTATTTATAAATTA
Found at i:14848163 original size:15 final size:15
Alignment explanation
Indices: 14848143--14848192 Score: 57
Period size: 15 Copynumber: 3.2 Consensus size: 15
14848133 CAACAACTTT
14848143 TTTTTAAAACACGAA
1 TTTTTAAAACACGAA
*
14848158 TTTTTAAAATACAAGAA
1 TTTTT-AAA-ACACGAA
14848175 -TTTTAGAAACACGAA
1 TTTTTA-AAACACGAA
14848190 TTT
1 TTT
14848193 AAAAAAAACA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
15 12 0.41
16 11 0.38
17 6 0.21
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.36
Consensus pattern (15 bp):
TTTTTAAAACACGAA
Found at i:14848175 original size:17 final size:16
Alignment explanation
Indices: 14848142--14848192 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
14848132 ACAACAACTT
* *
14848142 TTTTTTAAAACACGAA
1 TTTTTAAAAACAAGAA
14848158 TTTTTAAAATACAAGAA
1 TTTTTAAAA-ACAAGAA
* *
14848175 -TTTTAGAAACACGAA
1 TTTTTAAAAACAAGAA
14848190 TTT
1 TTT
14848193 AAAAAAAACA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 6 0.21
16 17 0.59
17 6 0.21
ACGTcount: A:0.45, C:0.10, G:0.08, T:0.37
Consensus pattern (16 bp):
TTTTTAAAAACAAGAA
Found at i:14848187 original size:32 final size:33
Alignment explanation
Indices: 14848144--14848228 Score: 95
Period size: 32 Copynumber: 2.6 Consensus size: 33
14848134 AACAACTTTT
* *
14848144 TTTTA-AAACACGAATTTTTAAAATACA-AGAA
1 TTTTAGAAACACGAATTTTTAAAAAACAGAAAA
**
14848175 TTTTAGAAACACGAATTTAAAAAAAACATGAAAA
1 TTTTAGAAACACGAATTTTTAAAAAACA-GAAAA
14848209 TTTT-GAAACACGAGATTTTT
1 TTTTAGAAACACGA-ATTTTT
14848229 TTTTGAAACA
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
31 5 0.11
32 19 0.43
33 9 0.20
34 11 0.25
ACGTcount: A:0.49, C:0.09, G:0.09, T:0.32
Consensus pattern (33 bp):
TTTTAGAAACACGAATTTTTAAAAAACAGAAAA
Found at i:14848559 original size:16 final size:16
Alignment explanation
Indices: 14848538--14848583 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
14848528 TATTAAAATT
14848538 AATTAAAATAAAATAA
1 AATTAAAATAAAATAA
** *
14848554 AATTAAAATGGAATTA
1 AATTAAAATAAAATAA
14848570 AATTAAAGATAAAA
1 AATTAAA-ATAAAA
14848584 ATATAAAAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
16 20 0.83
17 4 0.17
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (16 bp):
AATTAAAATAAAATAA
Found at i:14848780 original size:21 final size:21
Alignment explanation
Indices: 14848740--14848792 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
14848730 AACCTCTTTT
14848740 TTCTTTTTTCTCCTTTTTTCC
1 TTCTTTTTTCTCCTTTTTTCC
*
14848761 TTCTCTTTTTCTTC-TTTTT-C
1 TTCT-TTTTTCTCCTTTTTTCC
*
14848781 TTTTTTTTTCTC
1 TTCTTTTTTCTC
14848793 TGCTGGGCCA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 7 0.25
20 4 0.14
21 9 0.32
22 8 0.29
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (21 bp):
TTCTTTTTTCTCCTTTTTTCC
Found at i:14848968 original size:16 final size:16
Alignment explanation
Indices: 14848949--14848990 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
14848939 TTCTTTTCTC
14848949 TTTTCTCTTTT-TTTTG
1 TTTT-TCTTTTGTTTTG
*
14848965 TTTTTGTTTTGTTTTG
1 TTTTTCTTTTGTTTTG
14848981 TTTTT-TTTTG
1 TTTTTCTTTTG
14848991 GGCTGCTGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.00, C:0.05, G:0.12, T:0.83
Consensus pattern (16 bp):
TTTTTCTTTTGTTTTG
Found at i:14849082 original size:7 final size:7
Alignment explanation
Indices: 14849065--14849113 Score: 84
Period size: 7 Copynumber: 7.3 Consensus size: 7
14849055 TTTTATTATT
14849065 TTTTTTC
1 TTTTTTC
14849072 -TTTTTC
1 TTTTTTC
14849078 TTTTTTC
1 TTTTTTC
14849085 TTTTTTC
1 TTTTTTC
14849092 -TTTTTC
1 TTTTTTC
14849098 TTTTTTC
1 TTTTTTC
14849105 TTTTTTC
1 TTTTTTC
14849112 TT
1 TT
14849114 CTTCTTCTTC
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
6 12 0.30
7 28 0.70
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTTC
Found at i:14849088 original size:20 final size:20
Alignment explanation
Indices: 14849065--14849119 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
14849055 TTTTATTATT
14849065 TTTTTTCTTTTTCTTTTTTC
1 TTTTTTCTTTTTCTTTTTTC
14849085 TTTTTTCTTTTTCTTTTTTC
1 TTTTTTCTTTTTCTTTTTTC
*
14849105 TTTTTTCTTCTTCTT
1 TTTTTTCTTTTTCTT
14849120 CTTCTTCTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (20 bp):
TTTTTTCTTTTTCTTTTTTC
Found at i:14849117 original size:3 final size:3
Alignment explanation
Indices: 14849069--14849138 Score: 66
Period size: 3 Copynumber: 26.0 Consensus size: 3
14849059 ATTATTTTTT
* *
14849069 TTC TTT TTC TT- TT- TTC TT- TT- TTC TTT TTC TT- TT- TTC TT- TT-
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
14849109 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
14849139 AAAACCCTAG
Statistics
Matches: 59, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
2 16 0.27
3 43 0.73
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (3 bp):
TTC
Found at i:14849138 original size:9 final size:8
Alignment explanation
Indices: 14849075--14849134 Score: 65
Period size: 7 Copynumber: 7.6 Consensus size: 8
14849065 TTTTTTCTTT
14849075 TTCTTTT-
1 TTCTTTTC
14849082 TTCTTTT-
1 TTCTTTTC
14849089 TTCTTTTTC
1 TTC-TTTTC
14849098 TT-TTTTC
1 TTCTTTTC
14849105 TT-TTTTC
1 TTCTTTTC
14849112 TTCTTCTTC
1 TTCTT-TTC
14849121 TTCTTCTTC
1 TTCTT-TTC
14849130 TTCTT
1 TTCTT
14849135 CTTCAAAACC
Statistics
Matches: 49, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
7 24 0.49
8 6 0.12
9 19 0.39
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (8 bp):
TTCTTTTC
Found at i:14849572 original size:29 final size:29
Alignment explanation
Indices: 14849511--14849605 Score: 120
Period size: 29 Copynumber: 3.3 Consensus size: 29
14849501 ATTTAGGGCA
* * * *
14849511 AAAATGTAATTTTAAAAAGGTT-GTGTGTT
1 AAAATGTAATTTCAAAAAGTTTAG-GGGTC
*
14849540 AAAATGTAATTTCAAAAGGTTTAGGGGTC
1 AAAATGTAATTTCAAAAAGTTTAGGGGTC
*
14849569 AAAATATAATTTCAAAAAGTTTAGGGGTC
1 AAAATGTAATTTCAAAAAGTTTAGGGGTC
14849598 AAAATGTA
1 AAAATGTA
14849606 TTTTTTGATT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
29 56 0.98
30 1 0.02
ACGTcount: A:0.42, C:0.04, G:0.20, T:0.34
Consensus pattern (29 bp):
AAAATGTAATTTCAAAAAGTTTAGGGGTC
Found at i:14849625 original size:7 final size:8
Alignment explanation
Indices: 14849605--14849635 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
14849595 GTCAAAATGT
14849605 ATTTTTTG
1 ATTTTTTG
14849613 ATTTTTTG
1 ATTTTTTG
*
14849621 ATTTTTTA
1 ATTTTTTG
14849629 ATTTTTT
1 ATTTTTT
14849636 TGAAGATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.16, C:0.00, G:0.06, T:0.77
Consensus pattern (8 bp):
ATTTTTTG
Found at i:14850108 original size:162 final size:162
Alignment explanation
Indices: 14849782--14850689 Score: 1436
Period size: 162 Copynumber: 5.7 Consensus size: 162
14849772 AAAAATTTTC
* * * * *
14849782 TTTTTATTTGAAAAACAGAAA-TT--GA-AAATACCTCGGCGTGTGGCCCGAGGCTCAACTCACC
1 TTTTT-TTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACT
**
14849843 TCTAACAATATGAGTTGA-TTTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCC
65 TCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCC
*
14849907 GAGGCTCAACTCACTTCTTGCAATATGAGTTGA
130 GAGGCTCAACTCACTTCTCGCAATATGAGTTGA
* *
14849940 TTTTTTTTGAAAAGACAGAAATTTAAAAGAAATACCTCAGCGTGAGACCCAAGGCTCAACTCACT
1 TTTTTTTTGAAAA-ACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACT
14850005 TCTCGCAATATGAGTTGATTTTTTG-AAAACAG-AATTTAAAAGAAATACCTCAGCGTGCGACCC
65 TCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCC
*
14850068 GAGGCTCAACTCACTTCTTGCAATATGAGTTGA
130 GAGGCTCAACTCACTTCTCGCAATATGAGTTGA
14850101 TTTTTTTTGAAAAGACAGAAATTTAAAAGAAATACCTCAGCGTGCGA-CCGAGGCTCAACTCACT
1 TTTTTTTTGAAAA-ACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACT
14850165 TCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCC
65 TCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCC
*
14850230 GAGGCTCAACTCATTTCTCGCAATATGAGTTGA
130 GAGGCTCAACTCACTTCTCGCAATATGAGTTGA
* *
14850263 -TTTTTTTCAAAAACAGAGATTTAAAAG-AATACCTCAGCGT--GA-CCGAGGCTCAACTCA-TC
1 TTTTTTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACT-
* * *
14850322 TCTCGCATTATGAGTTGATTTTTTTTGAAAAATAGAAATTTAAAAGAAATACCTCAGCGTACGAC
65 TCTCGCAATATGAGTTGA--TTTTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGAC
14850387 CCGAGGCTCAACTCACTTCTCGCAATATGAGTTGA
128 CCGAGGCTCAACTCACTTCTCGCAATATGAGTTGA
*
14850422 --TTTTTTGAAAAATAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTT
1 TTTTTTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTT
14850485 CTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCG
66 CTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCG
14850550 AGGCTCAACTCACTTCTCGCAATATGAGTTGA
131 AGGCTCAACTCACTTCTCGCAATATGAGTTGA
*
14850582 TTTTTTTTTTGAAAAACAGAAATTTAAAAGAAATACCACAGCGTGCGACCCGAGGCTCAACTCAC
1 --TTTTTTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCAC
* *
14850647 TTCTCGCAATATGAGTTGATTTTTTG-AAAATAGAAATTGAAAA
64 TTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTTAAAA
14850690 ATATTTCTTG
Statistics
Matches: 702, Mismatches: 28, Indels: 35
0.92 0.04 0.05
Matches are distributed among these distances:
156 1 0.00
157 42 0.06
158 35 0.05
159 105 0.15
160 133 0.19
161 131 0.19
162 148 0.21
163 22 0.03
164 85 0.12
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (162 bp):
TTTTTTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTT
CTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCG
AGGCTCAACTCACTTCTCGCAATATGAGTTGA
Found at i:14850248 original size:80 final size:80
Alignment explanation
Indices: 14849788--14850689 Score: 1391
Period size: 80 Copynumber: 11.3 Consensus size: 80
14849778 TTTCTTTTTA
* * * * * **
14849788 TTTGAAAAACAGAAA-TT--GA-AAATACCTCGGCGTGTGGCCCGAGGCTCAACTCACCTCTAAC
1 TTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGC
14849849 AATATGAGTTGA-TT
66 AATATGAGTTGATTT
*
14849863 TTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTTGC
1 TTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGC
14849928 AATATGAGTTGATTTTT
66 AATATGAGTTGA--TTT
* *
14849945 TTTGAAAAGACAGAAATTTAAAAGAAATACCTCAGCGTGAGACCCAAGGCTCAACTCACTTCTCG
1 TTTGAAAA-ACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCG
14850010 CAATATGAGTTGATTT
65 CAATATGAGTTGATTT
*
14850026 TTTG-AAAACAG-AATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTTGC
1 TTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGC
14850089 AATATGAGTTGATTTTT
66 AATATGAGTTGA--TTT
14850106 TTTGAAAAGACAGAAATTTAAAAGAAATACCTCAGCGTGCGA-CCGAGGCTCAACTCACTTCTCG
1 TTTGAAAA-ACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCG
14850170 CAATATGAGTTGATTT
65 CAATATGAGTTGATTT
*
14850186 TTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCATTTCTCGC
1 TTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGC
14850251 AATATGAGTTGATTTT
66 AATATGAGTTGA-TTT
* *
14850267 TTTCAAAAACAGAGATTTAAAAG-AATACCTCAGCGT--GA-CCGAGGCTCAACTCA-TCTCTCG
1 TTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACT-TCTCG
*
14850327 CATTATGAGTTGATTTTT
65 CAATATGAGTTGA--TTT
* *
14850345 TTTGAAAAATAGAAATTTAAAAGAAATACCTCAGCGTACGACCCGAGGCTCAACTCACTTCTCGC
1 TTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGC
14850410 AATATGAGTTGATTT
66 AATATGAGTTGATTT
*
14850425 TTTGAAAAATAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGC
1 TTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGC
14850490 AATATGAGTTGATTT
66 AATATGAGTTGATTT
14850505 TTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGC
1 TTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGC
14850570 AATATGAGTTGATTTTTTT
66 AATATGAGTTGA----TTT
*
14850589 TTTGAAAAACAGAAATTTAAAAGAAATACCACAGCGTGCGACCCGAGGCTCAACTCACTTCTCGC
1 TTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGC
14850654 AATATGAGTTGATTT
66 AATATGAGTTGATTT
* *
14850669 TTTG-AAAATAGAAATTGAAAA
1 TTTGAAAAACAGAAATTTAAAA
14850690 ATATTTCTTG
Statistics
Matches: 774, Mismatches: 27, Indels: 48
0.91 0.03 0.06
Matches are distributed among these distances:
75 15 0.02
76 3 0.00
77 32 0.04
78 88 0.11
79 113 0.15
80 233 0.30
81 36 0.05
82 80 0.10
83 95 0.12
84 79 0.10
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (80 bp):
TTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGC
AATATGAGTTGATTT
Found at i:14850422 original size:239 final size:239
Alignment explanation
Indices: 14849807--14850689 Score: 1397
Period size: 239 Copynumber: 3.7 Consensus size: 239
14849797 CAGAAATTGA
* * * * **
14849807 AAATACCTCGGCGTGTGGCCCGAGGCTCAACTCACCTCTAACAATATGAGTTGA---TTTTTGAA
1 AAATACCTCAGCGT-CGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAA
*
14849869 AAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTTGCAATATG
65 AAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGCAATATG
* *
14849934 AGTTGATTTTTTTTGAAAAGACAGAAATTTAAAAGAAATACCTCAGCGTGAGACCCAAGGCTCAA
130 AGTTGA--TTTTTTGAAAA-ACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAA
*
14849999 CTCACTTCTCGCAATATGAGTTGATTTTTTGAAAACAGAATTTAAAAG
192 CTCACTTCTCGCAATATGAGTTGATTTTTTAAAAACAGAATTTAAAAG
*
14850047 AAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTTGCAATATGAGTTGATTTTTTTTGAA
1 AAATACCTCAGCGT-CGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAA
14850112 AAGACAGAAATTTAAAAGAAATACCTCAGCGTGCGA-CCGAGGCTCAACTCACTTCTCGCAATAT
65 AA-ACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGCAATAT
14850176 GAGTTGATTTTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACT
129 GAGTTGATTTTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACT
*
14850241 CATTTCTCGCAATATGAGTTGATTTTTTTCAAAAACAGAGATTTAAAAG
194 CACTTCTCGCAATATGAGTTGA-TTTTTT-AAAAACAGA-ATTTAAAAG
*
14850290 -AATACCTCAGCGT-GA-CCGAGGCTCAACTCA-TCTCTCGCATTATGAGTTGATTTTTTTTGAA
1 AAATACCTCAGCGTCGACCCGAGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTTTTTTGAA
* *
14850351 AAATAGAAATTTAAAAGAAATACCTCAGCGTACGACCCGAGGCTCAACTCACTTCTCGCAATATG
65 AAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGCAATATG
*
14850416 AGTTGATTTTTTGAAAAATAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTC
130 AGTTGATTTTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTC
14850481 ACTTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTTAAAAG
195 ACTTCTCGCAATATGAGTTGATTTTTT-AAAAACAG-AATTTAAAAG
14850528 AAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTTTG
1 AAATACCTCAGCGT-CGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTTTTTG
*
14850593 AAAAACAGAAATTTAAAAGAAATACCACAGCGTGCGACCCGAGGCTCAACTCACTTCTCGCAATA
63 AAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGCAATA
* *
14850658 TGAGTTGATTTTTTG-AAAATAGAAATTGAAAA
128 TGAGTTGATTTTTTGAAAAACAGAAATTTAAAA
14850690 ATATTTCTTG
Statistics
Matches: 603, Mismatches: 23, Indels: 31
0.92 0.04 0.05
Matches are distributed among these distances:
238 55 0.09
239 171 0.28
240 116 0.19
241 19 0.03
242 53 0.09
243 70 0.12
244 119 0.20
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (239 bp):
AAATACCTCAGCGTCGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAAA
AACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGCAATATGA
GTTGATTTTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCA
CTTCTCGCAATATGAGTTGATTTTTTAAAAACAGAATTTAAAAG
Found at i:14855575 original size:8 final size:8
Alignment explanation
Indices: 14855559--14855601 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
14855549 ATGTACATGC
*
14855559 AATACATG
1 AATAAATG
14855567 AATAAATG
1 AATAAATG
*
14855575 AATTAATG
1 AATAAATG
*
14855583 AATGAATG
1 AATAAATG
*
14855591 AATGAATG
1 AATAAATG
14855599 AAT
1 AAT
14855602 GACAAGTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.53, C:0.02, G:0.16, T:0.28
Consensus pattern (8 bp):
AATAAATG
Found at i:14855588 original size:4 final size:4
Alignment explanation
Indices: 14855564--14855603 Score: 62
Period size: 4 Copynumber: 10.0 Consensus size: 4
14855554 CATGCAATAC
* *
14855564 ATGA ATAA ATGA ATTA ATGA ATGA ATGA ATGA ATGA ATGA
1 ATGA ATGA ATGA ATGA ATGA ATGA ATGA ATGA ATGA ATGA
14855604 CAAGTAAATG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.53, C:0.00, G:0.20, T:0.28
Consensus pattern (4 bp):
ATGA
Found at i:14858158 original size:16 final size:16
Alignment explanation
Indices: 14858137--14858182 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
14858127 TATTAAAATT
14858137 AATTAAAATAAAATAA
1 AATTAAAATAAAATAA
* *
14858153 AATTAAAATGAAATTA
1 AATTAAAATAAAATAA
14858169 AATTAAAGATAAAA
1 AATTAAA-ATAAAA
14858183 ATATAAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
16 21 0.81
17 5 0.19
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (16 bp):
AATTAAAATAAAATAA
Found at i:14858161 original size:11 final size:11
Alignment explanation
Indices: 14858130--14858185 Score: 53
Period size: 11 Copynumber: 5.2 Consensus size: 11
14858120 CCTTATTTAT
*
14858130 TAAAATT-AAT
1 TAAAATTAAAA
14858140 TAAAA-TAAAA
1 TAAAATTAAAA
14858150 TAAAATTAAAA
1 TAAAATTAAAA
* *
14858161 TGAAATTAAAT
1 TAAAATTAAAA
*
14858172 TAAAGATAAAAA
1 TAAA-ATTAAAA
14858184 TA
1 TA
14858186 TAAAAATGCA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
9 1 0.03
10 12 0.32
11 17 0.46
12 7 0.19
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.29
Consensus pattern (11 bp):
TAAAATTAAAA
Found at i:14858353 original size:10 final size:10
Alignment explanation
Indices: 14858336--14858386 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
14858326 TTTTTTCTTT
14858336 TTCTTTTTTC
1 TTCTTTTTTC
* *
14858346 TCCTTTTTCC
1 TTCTTTTTTC
14858356 TTCTCTTTTTC
1 TTCT-TTTTTC
14858367 TTC-TTTTTC
1 TTCTTTTTTC
*
14858376 TTTTTTTTTC
1 TTCTTTTTTC
14858386 T
1 T
14858387 CTGCTGGGCC
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
9 8 0.24
10 18 0.53
11 8 0.24
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (10 bp):
TTCTTTTTTC
Found at i:14858364 original size:21 final size:19
Alignment explanation
Indices: 14858336--14858387 Score: 68
Period size: 21 Copynumber: 2.6 Consensus size: 19
14858326 TTTTTTCTTT
14858336 TTCTTTTTTCTCCTTTTTCC
1 TTCTTTTTTCTCCTTTTT-C
*
14858356 TTCTCTTTTTCTTCTTTTTC
1 TTCT-TTTTTCTCCTTTTTC
*
14858376 TTTTTTTTTCTC
1 TTCTTTTTTCTC
14858388 TGCTGGGCCA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 7 0.25
20 8 0.29
21 13 0.46
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (19 bp):
TTCTTTTTTCTCCTTTTTC
Found at i:14858377 original size:9 final size:9
Alignment explanation
Indices: 14858326--14858386 Score: 51
Period size: 9 Copynumber: 7.0 Consensus size: 9
14858316 ATTGAACCTC
14858326 TTTT-TTCT
1 TTTTCTTCT
14858334 TTTTC-T-T
1 TTTTCTTCT
*
14858341 TTTTCTCCT
1 TTTTCTTCT
14858350 TTTTCCTTCTCT
1 TTTT-C-T-TCT
14858362 TTTTCTTCT
1 TTTTCTTCT
14858371 TTTTCTT-T
1 TTTTCTTCT
14858379 TTTT-TTCT
1 TTTTCTTCT
14858387 CTGCTGGGCC
Statistics
Matches: 44, Mismatches: 2, Indels: 14
0.73 0.03 0.23
Matches are distributed among these distances:
7 8 0.18
8 11 0.25
9 15 0.34
10 2 0.05
11 2 0.05
12 6 0.14
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTCTTCT
Found at i:14858560 original size:6 final size:6
Alignment explanation
Indices: 14858546--14858582 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
14858536 TTCTTTTCTC
14858546 TTTTT- TTTTTG TTTTTG TTTTTG -TTTTG TTTTT- TTTT
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTT
14858583 GGGCTGCTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 14 0.47
6 16 0.53
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (6 bp):
TTTTTG
Found at i:14858560 original size:11 final size:11
Alignment explanation
Indices: 14858532--14858579 Score: 51
Period size: 12 Copynumber: 4.2 Consensus size: 11
14858522 TTGGGGGGGC
*
14858532 TTGTTTCTTTT
1 TTGTTTTTTTT
* *
14858543 CTCTTTTTTTT
1 TTGTTTTTTTT
14858554 TTGTTTTTGTTT
1 TTGTTTTT-TTT
14858566 TTGTTTTGTTTT
1 TTGTTTT-TTTT
14858578 TT
1 TT
14858580 TTTGGGCTGC
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
11 14 0.47
12 15 0.50
13 1 0.03
ACGTcount: A:0.00, C:0.06, G:0.10, T:0.83
Consensus pattern (11 bp):
TTGTTTTTTTT
Found at i:14858572 original size:17 final size:16
Alignment explanation
Indices: 14858546--14858582 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
14858536 TTCTTTTCTC
14858546 TTTTTT-TTTTGTTTT
1 TTTTTTGTTTTGTTTT
14858561 TGTTTTTGTTTTGTTTT
1 T-TTTTTGTTTTGTTTT
14858578 TTTTT
1 TTTTT
14858583 GGGCTGCTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 1 0.05
16 9 0.45
17 10 0.50
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (16 bp):
TTTTTTGTTTTGTTTT
Found at i:14858673 original size:15 final size:15
Alignment explanation
Indices: 14858653--14858684 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
14858643 TATTTTATTT
*
14858653 TTTTTTTCTTTTTTC
1 TTTTTTTCTTTCTTC
14858668 TTTTTTTCTTTCTTC
1 TTTTTTTCTTTCTTC
14858683 TT
1 TT
14858685 CTTCAAAACC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTTTCTTTCTTC
Found at i:14858788 original size:22 final size:22
Alignment explanation
Indices: 14858749--14858794 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
14858739 TCAGAGGCTC
* *
14858749 TCCTCTTCTCTTCTTTTTTTCT
1 TCCTCTCCTCTTCTTTTTCTCT
14858771 TCCTCTCCT-TTCTCTTTTCTCT
1 TCCTCTCCTCTTCT-TTTTCTCT
14858793 TC
1 TC
14858795 TATTTCTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (22 bp):
TCCTCTCCTCTTCTTTTTCTCT
Found at i:14859070 original size:29 final size:29
Alignment explanation
Indices: 14859054--14859158 Score: 95
Period size: 29 Copynumber: 3.6 Consensus size: 29
14859044 AGAAAATTTA
14859054 GGGTAAAAATGTAATTTTAAAAAGGTTAT
1 GGGTAAAAATGTAATTTTAAAAAGGTTAT
* * *
14859083 GGGTTAAAATGTAA-TTTCAAAAGGTTTAG
1 GGGTAAAAATGTAATTTTAAAAAGG-TTAT
* * * * * *
14859112 GGGTCAATATATAATTTCAAAAAGTTTAG
1 GGGTAAAAATGTAATTTTAAAAAGGTTAT
* *
14859141 GGGTCAAAATGTATTTTT
1 GGGTAAAAATGTAATTTT
14859159 TTATTTTTTG
Statistics
Matches: 61, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
28 9 0.15
29 45 0.74
30 7 0.11
ACGTcount: A:0.39, C:0.04, G:0.21, T:0.36
Consensus pattern (29 bp):
GGGTAAAAATGTAATTTTAAAAAGGTTAT
Found at i:14859174 original size:16 final size:16
Alignment explanation
Indices: 14859153--14859183 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14859143 GTCAAAATGT
*
14859153 ATTTTTTTATTTTTTG
1 ATTTTTTAATTTTTTG
14859169 ATTTTTTAATTTTTT
1 ATTTTTTAATTTTTT
14859184 TTGAAGATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (16 bp):
ATTTTTTAATTTTTTG
Found at i:14859536 original size:15 final size:15
Alignment explanation
Indices: 14859516--14859545 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14859506 CTTTTTTGGC
*
14859516 CGATTTGCTTTCTGT
1 CGATTTGCTCTCTGT
14859531 CGATTTGCTCTCTGT
1 CGATTTGCTCTCTGT
14859546 TTTACCCTCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.23, G:0.20, T:0.50
Consensus pattern (15 bp):
CGATTTGCTCTCTGT
Found at i:14859635 original size:7 final size:7
Alignment explanation
Indices: 14859623--14859649 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
14859613 CGACTGATTT
14859623 CCTTCTC
1 CCTTCTC
14859630 CCTTCTC
1 CCTTCTC
14859637 CCTTCTC
1 CCTTCTC
14859644 CCTTCT
1 CCTTCT
14859650 TTTCTTTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (7 bp):
CCTTCTC
Found at i:14860606 original size:19 final size:19
Alignment explanation
Indices: 14860582--14860618 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
14860572 GCATGACCTC
14860582 TATATGCACCTGAACGATG
1 TATATGCACCTGAACGATG
*
14860601 TATATGTACCTGAACGAT
1 TATATGCACCTGAACGAT
14860619 AATATTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (19 bp):
TATATGCACCTGAACGATG
Found at i:14862627 original size:119 final size:118
Alignment explanation
Indices: 14862504--14862812 Score: 422
Period size: 119 Copynumber: 2.6 Consensus size: 118
14862494 ATTAATTTGA
* * * *
14862504 ATTTATATTAAATAAGTAATTGAAAATATATATTTT-ATTAAATTATATTTAATAATAATTATGT
1 ATTTATATTAAA-AATTTATT-AAATTATATATTTTAATTAAAATATATTTAATAATAATTATGT
* * *
14862568 TAAATTATATTTCATAGTATTATATATTATGATTTTAGAAAATTCATATAAGAAT
64 TAAATTATATTTCACAGTATCATATATTATGATTTTAGAAAATTAATATAAGAAT
* *
14862623 ATTTAATATTAAGAATTTATTAAATTATATATTTTAATTAAAATATATTTAATAGTAATTATGTT
1 ATTT-ATATTAAAAATTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
* * *
14862688 AATTTATATTTTACAGTATCATATATTATGATTTTAGTAAATTAATATAAGAAT
65 AAATTATATTTCACAGTATCATATATTATGATTTTAGAAAATTAATATAAGAAT
* * *
14862742 ATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAAAATTATGT
1 ATTTA-TATTAA-AAATTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG-
14862807 TTAAAT
63 TTAAAT
14862813 ATGATTAAAT
Statistics
Matches: 167, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
118 14 0.08
119 94 0.56
120 54 0.32
121 5 0.03
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.48
Consensus pattern (118 bp):
ATTTATATTAAAAATTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTA
AATTATATTTCACAGTATCATATATTATGATTTTAGAAAATTAATATAAGAAT
Found at i:14862784 original size:18 final size:17
Alignment explanation
Indices: 14862756--14862790 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14862746 ATTATTAAGA
*
14862756 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
14862773 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
14862791 TTAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:14862790 original size:16 final size:16
Alignment explanation
Indices: 14862756--14862810 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
14862746 ATTATTAAGA
14862756 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
14862773 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
14862789 A-TTTAATAAAAAT-T
1 ATTTTAATTAAAATAT
14862803 ATGTTTAA
1 AT-TTTAA
14862811 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:14863047 original size:16 final size:16
Alignment explanation
Indices: 14863026--14863077 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
14863016 GATTTGCTAT
14863026 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
14863042 TACACCTTTAATCCAA
1 TACACCTCTAATCCAA
14863058 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
14863074 TACA
1 TACA
14863078 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.27
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:14863966 original size:176 final size:178
Alignment explanation
Indices: 14863680--14864019 Score: 526
Period size: 176 Copynumber: 1.9 Consensus size: 178
14863670 AAAAAAGTTT
* * **
14863680 GTGTCAGAGTCAGATATCAGTATACGAAAAAAATAAAAAATAAAAATTTTGGGTGTTGGCCTGTC
1 GTGTCAGAATAAGATATCAGTATACGAAAAAAAT----AATAAAAATTTTGGGTACTGGCCTGTC
*
14863745 AATGGCCGGCACCCAGTACAACTTAAAAAAAATTCTTTTTTTTTTCGTGTCAGAATCAGATATCA
62 AATAGCCGGCACCCAGTACAACTTAAAAAAAATTCTTTTTTTTTTCGTGTCAGAATCAGATATCA
*
14863810 GTATACGAAAAAAA-ATTAAAAAATTTTAGGTGCTTAGAAAAAAAATTTTTTC
127 GTATACGAAAAAAATA-AAAAAAATTTTAGGTGCTTAGAAAAAAAATTTTTTC
14863862 GTGTCAGAATAAGATATCAGTATACGAAAAAAAT-A-AAAAATTTTGGGTACTGGCCTGTCAATA
1 GTGTCAGAATAAGATATCAGTATACGAAAAAAATAATAAAAATTTTGGGTACTGGCCTGTCAATA
*
14863925 GCCGGCACCCAGTACAATTTAAAAAAAATT-TCTTTTTTTTTCGTGTCAGAATCAGATATCAGTA
66 GCCGGCACCCAGTACAACTTAAAAAAAATTCT-TTTTTTTTTCGTGTCAGAATCAGATATCAGTA
*
14863989 TACGAAAAAAATAAAAAAAATTTTGGGTGCT
130 TACGAAAAAAATAAAAAAAATTTTAGGTGCT
14864020 GGCCTGTCAA
Statistics
Matches: 148, Mismatches: 8, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
175 1 0.01
176 113 0.76
177 2 0.01
182 32 0.22
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.30
Consensus pattern (178 bp):
GTGTCAGAATAAGATATCAGTATACGAAAAAAATAATAAAAATTTTGGGTACTGGCCTGTCAATA
GCCGGCACCCAGTACAACTTAAAAAAAATTCTTTTTTTTTTCGTGTCAGAATCAGATATCAGTAT
ACGAAAAAAATAAAAAAAATTTTAGGTGCTTAGAAAAAAAATTTTTTC
Found at i:14864045 original size:107 final size:106
Alignment explanation
Indices: 14863855--14864213 Score: 563
Period size: 105 Copynumber: 3.4 Consensus size: 106
14863845 AGAAAAAAAA
* *
14863855 TTTTTTCGTGTCAGAATAAGATATCAGTATACGAAAAAAAT--AAAAAATTTTGGGTACTGGCCT
1 TTTTTTCGTGTCAGAATCAGATATCAGTATACGAAAAAAATAAAAAAAATTTTGGGTGCTGGCCT
*
14863918 GTCAATAGCCGGCACCCAGTACAATTTAAAAAAAATTTCTTT
66 GTCAATGGCCGGCACCCAGTACAATTTAAAAAAAATTT-TTT
14863960 TTTTTTCGTGTCAGAATCAGATATCAGTATACGAAAAAAATAAAAAAAATTTTGGGTGCTGGCCT
1 TTTTTTCGTGTCAGAATCAGATATCAGTATACGAAAAAAATAAAAAAAATTTTGGGTGCTGGCCT
* *
14864025 GTCAATGGCCGGCACCCAGTACAAATTAAAAAAAA-TTATT
66 GTCAATGGCCGGCACCCAGTACAATTTAAAAAAAATTTTTT
14864065 TTTTTTCGTGTCAGAATCAGATATCAGTATACG-AAAAAATAAAAAAAA--TT-GGTGCTGGCCT
1 TTTTTTCGTGTCAGAATCAGATATCAGTATACGAAAAAAATAAAAAAAATTTTGGGTGCTGGCCT
14864126 GTCAATGGCCGGCACCCAGTAC-ATTTAAAAAAAAAATTTTTTTT
66 GTCAATGGCCGGCACCCAGTACAATTT--AAAAAAAA--TTTTTT
*
14864170 TTTTTTCGTGTCAGAATCAGATTTCAGTATACGAAAAAAATAAA
1 TTTTTTCGTGTCAGAATCAGATATCAGTATACGAAAAAAATAAA
14864214 TATAATTATA
Statistics
Matches: 238, Mismatches: 8, Indels: 15
0.91 0.03 0.06
Matches are distributed among these distances:
100 3 0.01
101 33 0.14
102 10 0.04
104 15 0.06
105 111 0.47
106 12 0.05
107 54 0.23
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (106 bp):
TTTTTTCGTGTCAGAATCAGATATCAGTATACGAAAAAAATAAAAAAAATTTTGGGTGCTGGCCT
GTCAATGGCCGGCACCCAGTACAATTTAAAAAAAATTTTTT
Found at i:14867309 original size:58 final size:58
Alignment explanation
Indices: 14867239--14867393 Score: 310
Period size: 58 Copynumber: 2.7 Consensus size: 58
14867229 TTACCAAATG
14867239 CCACAAATTGATGGGTTTCTCTACAGGTTTGTATCTACACCAAATGCCACAAAATGCT
1 CCACAAATTGATGGGTTTCTCTACAGGTTTGTATCTACACCAAATGCCACAAAATGCT
14867297 CCACAAATTGATGGGTTTCTCTACAGGTTTGTATCTACACCAAATGCCACAAAATGCT
1 CCACAAATTGATGGGTTTCTCTACAGGTTTGTATCTACACCAAATGCCACAAAATGCT
14867355 CCACAAATTGATGGGTTTCTCTACAGGTTTGTATCTACA
1 CCACAAATTGATGGGTTTCTCTACAGGTTTGTATCTACA
14867394 GGTTTGTATC
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 97 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (58 bp):
CCACAAATTGATGGGTTTCTCTACAGGTTTGTATCTACACCAAATGCCACAAAATGCT
Found at i:14867393 original size:14 final size:14
Alignment explanation
Indices: 14867374--14867403 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
14867364 GATGGGTTTC
14867374 TCTACAGGTTTGTA
1 TCTACAGGTTTGTA
14867388 TCTACAGGTTTGTA
1 TCTACAGGTTTGTA
14867402 TC
1 TC
14867404 AGCAAGCCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (14 bp):
TCTACAGGTTTGTA
Found at i:14868725 original size:119 final size:118
Alignment explanation
Indices: 14868602--14868910 Score: 422
Period size: 119 Copynumber: 2.6 Consensus size: 118
14868592 ATTAATTTGA
* * * *
14868602 ATTTATATTAAATAAGTAATTGAAAATATATATTTT-ATTAAATTATATTTAATAATAATTATGT
1 ATTTATATTAAA-AATTTATT-AAATTATATATTTTAATTAAAATATATTTAATAATAATTATGT
* * *
14868666 TAAATTATATTTCATAGTATTATATATTATGATTTTAGAAAATTCATATAAGAAT
64 TAAATTATATTTCACAGTATCATATATTATGATTTTAGAAAATTAATATAAGAAT
* *
14868721 ATTTAATATTAAGAATTTATTAAATTATATATTTTAATTAAAATATATTTAATAGTAATTATGTT
1 ATTT-ATATTAAAAATTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
* * *
14868786 AATTTATATTTTACAGTATCATATATTATGATTTTAGTAAATTAATATAAGAAT
65 AAATTATATTTCACAGTATCATATATTATGATTTTAGAAAATTAATATAAGAAT
* * *
14868840 ATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAAAATTATGT
1 ATTTA-TATTAA-AAATTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG-
14868905 TTAAAT
63 TTAAAT
14868911 ATGATTAAAT
Statistics
Matches: 167, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
118 14 0.08
119 94 0.56
120 54 0.32
121 5 0.03
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.48
Consensus pattern (118 bp):
ATTTATATTAAAAATTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTA
AATTATATTTCACAGTATCATATATTATGATTTTAGAAAATTAATATAAGAAT
Found at i:14868882 original size:18 final size:17
Alignment explanation
Indices: 14868854--14868888 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14868844 ATTATTAAGA
*
14868854 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
14868871 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
14868889 TTAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:14868888 original size:16 final size:16
Alignment explanation
Indices: 14868854--14868908 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
14868844 ATTATTAAGA
14868854 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
14868871 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
14868887 A-TTTAATAAAAAT-T
1 ATTTTAATTAAAATAT
14868901 ATGTTTAA
1 AT-TTTAA
14868909 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:14870718 original size:95 final size:97
Alignment explanation
Indices: 14870524--14870737 Score: 299
Period size: 95 Copynumber: 2.2 Consensus size: 97
14870514 AACAACTAGC
* * *
14870524 TTTATTTGA-TTTTTCCTTAAAAATCCTAAATACTAAACCCCAGTCTAATTTTTTTAAAATTTAT
1 TTTATTTGATTTTTTCCTTAAAAATCATAAACACTAAACCCCAATCTAATTTTTTTAAAATTTAT
* *
14870588 AATTAATTTACTCAAGTAACCCTAAACCCCAA
66 AATTAATTTAATCAAGAAACCCTAAACCCCAA
* *
14870620 TTTATTTGATTTTTTCCTTAAAAATCATAAACACTAAACCCTAATCTAA-TTTTTTGAAA-TTAT
1 TTTATTTGATTTTTTCCTTAAAAATCATAAACACTAAACCCCAATCTAATTTTTTTAAAATTTAT
* **
14870683 AATTAATTTAATTAAGAAACCCTAAACCCTTA
66 AATTAATTTAATCAAGAAACCCTAAACCCCAA
* *
14870715 TTTATTTAATTTTTTACTTAAAA
1 TTTATTTGATTTTTTCCTTAAAA
14870738 CCCTAAAATC
Statistics
Matches: 105, Mismatches: 12, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
95 52 0.50
96 18 0.17
97 35 0.33
ACGTcount: A:0.38, C:0.16, G:0.03, T:0.43
Consensus pattern (97 bp):
TTTATTTGATTTTTTCCTTAAAAATCATAAACACTAAACCCCAATCTAATTTTTTTAAAATTTAT
AATTAATTTAATCAAGAAACCCTAAACCCCAA
Found at i:14878980 original size:23 final size:24
Alignment explanation
Indices: 14878949--14878993 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
14878939 GGAGTCTGAA
*
14878949 CATTAGTGAGACAATTGTTTCTTT
1 CATTAGTGAGACAACTGTTTCTTT
14878973 CATT-GTGAGACAACTGTTTCT
1 CATTAGTGAGACAACTGTTTCT
14878994 GGTAAAGCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.42
Consensus pattern (24 bp):
CATTAGTGAGACAACTGTTTCTTT
Found at i:14882737 original size:23 final size:24
Alignment explanation
Indices: 14882689--14882737 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
14882679 AATTTGACTC
**
14882689 TTTTAAAATGATTAAAATTATTTTT
1 TTTTAAAAT-ATTAAAATTAAATTT
14882714 TTTTAAAAT-TTAAAATTAAATTT
1 TTTTAAAATATTAAAATTAAATTT
14882737 T
1 T
14882738 ACTAAAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 13 0.59
25 9 0.41
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (24 bp):
TTTTAAAATATTAAAATTAAATTT
Found at i:14896646 original size:1 final size:1
Alignment explanation
Indices: 14896640--14896676 Score: 65
Period size: 1 Copynumber: 37.0 Consensus size: 1
14896630 TTCATCTTGA
*
14896640 TTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
14896677 GTTCAAGCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.00, C:0.00, G:0.03, T:0.97
Consensus pattern (1 bp):
T
Found at i:14896665 original size:18 final size:18
Alignment explanation
Indices: 14896642--14896679 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
14896632 CATCTTGATT
14896642 TTTTTTTTTTTTTTTTTG
1 TTTTTTTTTTTTTTTTTG
14896660 TTTTTTTTTTTTTTTTTG
1 TTTTTTTTTTTTTTTTTG
14896678 TT
1 TT
14896680 CAAGCATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.05, T:0.95
Consensus pattern (18 bp):
TTTTTTTTTTTTTTTTTG
Found at i:14900657 original size:8 final size:8
Alignment explanation
Indices: 14900641--14900683 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
14900631 ATGTACATGC
*
14900641 AATACATG
1 AATAAATG
14900649 AATAAATG
1 AATAAATG
*
14900657 AATTAATG
1 AATAAATG
*
14900665 AATGAATG
1 AATAAATG
*
14900673 AATGAATG
1 AATAAATG
14900681 AAT
1 AAT
14900684 GACAAGTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.53, C:0.02, G:0.16, T:0.28
Consensus pattern (8 bp):
AATAAATG
Found at i:14900670 original size:4 final size:4
Alignment explanation
Indices: 14900646--14900685 Score: 62
Period size: 4 Copynumber: 10.0 Consensus size: 4
14900636 CATGCAATAC
* *
14900646 ATGA ATAA ATGA ATTA ATGA ATGA ATGA ATGA ATGA ATGA
1 ATGA ATGA ATGA ATGA ATGA ATGA ATGA ATGA ATGA ATGA
14900686 CAAGTAAATG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.53, C:0.00, G:0.20, T:0.28
Consensus pattern (4 bp):
ATGA
Found at i:14903238 original size:16 final size:16
Alignment explanation
Indices: 14903217--14903262 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
14903207 TATTAAAATT
14903217 AATTAAAATAAAATAA
1 AATTAAAATAAAATAA
* *
14903233 AATTAAAATGAAATTA
1 AATTAAAATAAAATAA
14903249 AATTAAAGATAAAA
1 AATTAAA-ATAAAA
14903263 ATATAAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
16 21 0.81
17 5 0.19
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (16 bp):
AATTAAAATAAAATAA
Found at i:14903241 original size:11 final size:11
Alignment explanation
Indices: 14903210--14903265 Score: 53
Period size: 11 Copynumber: 5.2 Consensus size: 11
14903200 CCTTATTTAT
*
14903210 TAAAATT-AAT
1 TAAAATTAAAA
14903220 TAAAA-TAAAA
1 TAAAATTAAAA
14903230 TAAAATTAAAA
1 TAAAATTAAAA
* *
14903241 TGAAATTAAAT
1 TAAAATTAAAA
*
14903252 TAAAGATAAAAA
1 TAAA-ATTAAAA
14903264 TA
1 TA
14903266 TAAAAATGCA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
9 1 0.03
10 12 0.32
11 17 0.46
12 7 0.19
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.29
Consensus pattern (11 bp):
TAAAATTAAAA
Found at i:14903423 original size:6 final size:7
Alignment explanation
Indices: 14903404--14903463 Score: 50
Period size: 7 Copynumber: 8.1 Consensus size: 7
14903394 GAATTGAACC
14903404 TCTTTTT
1 TCTTTTT
14903411 TCTTTTT
1 TCTTTTT
14903418 TCTTTTT
1 TCTTTTT
*
14903425 TCTCCTTT
1 TCT-TTTT
**
14903433 T-TTCCT
1 TCTTTTT
14903439 TCTCTTTT
1 TCT-TTTT
14903447 TCTTCTTTT
1 TC-T-TTTT
14903456 TCTTTTT
1 TCTTTTT
14903463 T
1 T
14903464 TTCTCTGCTG
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
6 2 0.05
7 24 0.56
8 9 0.21
9 8 0.19
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (7 bp):
TCTTTTT
Found at i:14903423 original size:14 final size:15
Alignment explanation
Indices: 14903404--14903462 Score: 61
Period size: 14 Copynumber: 4.1 Consensus size: 15
14903394 GAATTGAACC
14903404 TCTTTTTTCT-TTTT
1 TCTTTTTTCTCTTTT
*
14903418 TCTTTTTTCTCCTTT
1 TCTTTTTTCTCTTTT
**
14903433 T-TTCCTTCTCTTTT
1 TCTTTTTTCTCTTTT
14903447 TCTTCTTTT-TCTTTT
1 TCTT-TTTTCTCTTTT
14903462 T
1 T
14903463 TTTCTCTGCT
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
14 21 0.58
15 13 0.36
16 2 0.06
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (15 bp):
TCTTTTTTCTCTTTT
Found at i:14903425 original size:9 final size:9
Alignment explanation
Indices: 14903413--14903467 Score: 56
Period size: 9 Copynumber: 5.9 Consensus size: 9
14903403 CTCTTTTTTC
14903413 TTTTTTCTT
1 TTTTTTCTT
* *
14903422 TTTTCTCCT
1 TTTTTTCTT
*
14903431 TTTTTCCTT
1 TTTTTTCTT
14903440 CTCTTTTTCTT
1 -T-TTTTTCTT
*
14903451 CTTTTTCTT
1 TTTTTTCTT
14903460 TTTTTTCT
1 TTTTTTCT
14903468 CTGCTGGGCC
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
9 28 0.78
10 1 0.03
11 7 0.19
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:14903457 original size:21 final size:21
Alignment explanation
Indices: 14903417--14903468 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
14903407 TTTTTCTTTT
14903417 TTCTTTTTTCTCCTTTTTTCC
1 TTCTTTTTTCTCCTTTTTTCC
*
14903438 TTCTCTTTTTCTTC-TTTTT-C
1 TTCT-TTTTTCTCCTTTTTTCC
14903458 TT-TTTTTTCTC
1 TTCTTTTTTCTC
14903469 TGCTGGGCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
18 7 0.25
19 1 0.04
20 3 0.11
21 9 0.32
22 8 0.29
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (21 bp):
TTCTTTTTTCTCCTTTTTTCC
Found at i:14903466 original size:30 final size:28
Alignment explanation
Indices: 14903410--14903464 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
14903400 AACCTCTTTT
14903410 TTCTTTTTTCTTTTTTCTCCTTTTTTCC
1 TTCTTTTTTCTTTTTTCTCCTTTTTTCC
*
14903438 TTCTCTTTTTCTTCTTTT-TCTTTTTTT
1 TTCT-TTTTTCTT-TTTTCTCCTTTTTT
14903465 TCTCTGCTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 4 0.17
29 16 0.67
30 4 0.17
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (28 bp):
TTCTTTTTTCTTTTTTCTCCTTTTTTCC
Found at i:14903641 original size:6 final size:6
Alignment explanation
Indices: 14903627--14903663 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
14903617 TTCTTTTCTC
14903627 TTTTT- TTTTTG TTTTTG TTTTTG -TTTTG TTTTT- TTTT
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTT
14903664 GGGCTGCTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 14 0.47
6 16 0.53
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (6 bp):
TTTTTG
Found at i:14903641 original size:11 final size:11
Alignment explanation
Indices: 14903613--14903660 Score: 51
Period size: 12 Copynumber: 4.2 Consensus size: 11
14903603 TTGGGGGGGC
*
14903613 TTGTTTCTTTT
1 TTGTTTTTTTT
* *
14903624 CTCTTTTTTTT
1 TTGTTTTTTTT
14903635 TTGTTTTTGTTT
1 TTGTTTTT-TTT
14903647 TTGTTTTGTTTT
1 TTGTTTT-TTTT
14903659 TT
1 TT
14903661 TTTGGGCTGC
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
11 14 0.47
12 15 0.50
13 1 0.03
ACGTcount: A:0.00, C:0.06, G:0.10, T:0.83
Consensus pattern (11 bp):
TTGTTTTTTTT
Found at i:14903653 original size:17 final size:16
Alignment explanation
Indices: 14903627--14903663 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
14903617 TTCTTTTCTC
14903627 TTTTTT-TTTTGTTTT
1 TTTTTTGTTTTGTTTT
14903642 TGTTTTTGTTTTGTTTT
1 T-TTTTTGTTTTGTTTT
14903659 TTTTT
1 TTTTT
14903664 GGGCTGCTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 1 0.05
16 9 0.45
17 10 0.50
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (16 bp):
TTTTTTGTTTTGTTTT
Found at i:14903751 original size:15 final size:15
Alignment explanation
Indices: 14903733--14903764 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
14903723 ATATTTTATT
*
14903733 TTTTTTTCTTTTTTC
1 TTTTTTTCTTTCTTC
14903748 TTTTTTTCTTTCTTC
1 TTTTTTTCTTTCTTC
14903763 TT
1 TT
14903765 CTTCAAAACC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTTTCTTTCTTC
Done.