Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 57 of 240
Found at i:19047657 original size:134 final size:132
Alignment explanation
Indices: 19047464--19047741 Score: 423
Period size: 134 Copynumber: 2.1 Consensus size: 132
19047454 AATAGATTGA
* * * *
19047464 AGATCAAGGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAAATTTTACCTCCA-CTGACCACAGTGGAGTACATTGAAGCCGATAATTCT
* *
19047529 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
65 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGA-AGCAGATCTTGCCTTCATGTA-TTGGC-G
19047594 CGAAGC
127 CGAAGC
19047600 AGATCAAAGATGGCAAATTTTACCTCC-CTGACCACAGTGGAGTACATTGAAGCCGATAATTCTA
1 AGATCAAAGATGGCAAATTTTACCTCCACTGACCACAGTGGAGTACATTGAAGCCGATAATTCTA
* *
19047664 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
66 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGAAGCAGATCTTGCCTTCATGTATTGGCGCGAA
*
19047729 GT
131 GC
*
19047731 AGATCGAAGAT
1 AGATCAAAGAT
19047742 AGTAGGTCCT
Statistics
Matches: 132, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
131 15 0.11
132 5 0.04
133 18 0.14
134 69 0.52
136 25 0.19
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (132 bp):
AGATCAAAGATGGCAAATTTTACCTCCACTGACCACAGTGGAGTACATTGAAGCCGATAATTCTA
TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGAAGCAGATCTTGCCTTCATGTATTGGCGCGAA
GC
Found at i:19047769 original size:783 final size:783
Alignment explanation
Indices: 19046264--19047835 Score: 3126
Period size: 783 Copynumber: 2.0 Consensus size: 783
19046254 TCTCGTTTGT
19046264 AGCAGAGCTGGTTGAAGATATCAGATCTTGCTTTTCTGTATTTGGCAGCGAAGCAGATCGAAGAT
1 AGCAGAGCTGGTTGAAGATATCAGATCTTGCTTTTCTGTATTTGGCAGCGAAGCAGATCGAAGAT
19046329 GGCAGATTTTACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATT
66 GGCAGATTTTACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATT
19046394 TGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAA
131 TGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAA
19046459 AGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTA
196 AGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTA
19046524 TATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGA
261 TATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGA
*
19046589 TCAAAGATGGCAGATTTTACCTCCTTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTC
326 TCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTC
19046654 CCTGTATTTGGCAGTGGAATAGATTGAAGATCAAGGATGGCAGATTTTACCTCCATGTGACTACA
391 CCTGTATTTGGCAGTGGAATAGATTGAAGATCAAGGATGGCAGATTTTACCTCCATGTGACTACA
19046719 GTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTG
456 GTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTG
19046784 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAAATTTTACCTCCCTGAC
521 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAAATTTTACCTCCCTGAC
19046849 CACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAG
586 CACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAG
19046914 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTAT
651 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTAT
19046979 ATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
716 ATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
19047044 GAA
781 GAA
19047047 AGCAGAGCTGGTTGAAGATATCAGATCTTGCTTTTCTGTATTTGGCAGCGAAGCAGATCGAAGAT
1 AGCAGAGCTGGTTGAAGATATCAGATCTTGCTTTTCTGTATTTGGCAGCGAAGCAGATCGAAGAT
19047112 GGCAGATTTTACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATT
66 GGCAGATTTTACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATT
19047177 TGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAA
131 TGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAA
19047242 AGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTA
196 AGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTA
19047307 TATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGA
261 TATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGA
19047372 TCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTC
326 TCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTC
19047437 CCTGTATTTGGCAGTGGAATAGATTGAAGATCAAGGATGGCAGATTTTACCTCCATGTGACTACA
391 CCTGTATTTGGCAGTGGAATAGATTGAAGATCAAGGATGGCAGATTTTACCTCCATGTGACTACA
19047502 GTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTG
456 GTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTG
19047567 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAAATTTTACCTCCCTGAC
521 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAAATTTTACCTCCCTGAC
*
19047632 CACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAG
586 CACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAG
19047697 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTAT
651 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTAT
19047762 ATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
716 ATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
19047827 GAA
781 GAA
19047830 AGCAGA
1 AGCAGA
19047836 TCTTGTCTTC
Statistics
Matches: 787, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
783 787 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (783 bp):
AGCAGAGCTGGTTGAAGATATCAGATCTTGCTTTTCTGTATTTGGCAGCGAAGCAGATCGAAGAT
GGCAGATTTTACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATT
TGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAA
AGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTA
TATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGA
TCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTC
CCTGTATTTGGCAGTGGAATAGATTGAAGATCAAGGATGGCAGATTTTACCTCCATGTGACTACA
GTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTG
CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAAATTTTACCTCCCTGAC
CACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAG
AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTAT
ATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
GAA
Found at i:19047851 original size:132 final size:132
Alignment explanation
Indices: 19047697--19048663 Score: 1686
Period size: 132 Copynumber: 7.3 Consensus size: 132
19047687 TAGATTGAAG
19047697 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTAT
1 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTAT
19047762 ATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
66 ATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
19047827 GA
131 GA
19047829 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTAT
1 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTAT
19047894 ATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
66 ATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
19047959 GA
131 GA
19047961 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTAT
1 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTAT
*
19048026 ATTGAT-GGAAGTGGATCTAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
66 ATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
19048090 GA
131 GA
19048092 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTAT
1 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTAT
19048157 ATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
66 ATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
19048222 GA
131 GA
19048224 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTAT
1 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTAT
* *
19048289 ATTGATAGGAAGTGGATCCAAGATACAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAA
66 ATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
19048354 GA
131 GA
* **
19048356 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTAT
1 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTAT
* * * * *
19048421 AATGATTGGAAGTGGATCGACGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
66 ATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
19048486 GA
131 GA
* **
19048488 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTAT
1 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTAT
* * * * * * ** *
19048553 AATGATTGGAAGTGGATCGACGACGCAGATTTTGTCTTCCCATATTGGTGGTAAAGTAGATCGAA
66 ATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
19048618 GA
131 GA
* * *
19048620 AAGTAGATCTTGTC-TCATGTATTTGCATGAAGTAGATCGAAGAT
1 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
19048664 TACAGTCTTA
Statistics
Matches: 812, Mismatches: 22, Indels: 3
0.97 0.03 0.00
Matches are distributed among these distances:
131 157 0.19
132 655 0.81
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (132 bp):
AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTAT
ATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
GA
Found at i:19048433 original size:44 final size:45
Alignment explanation
Indices: 19047687--19048634 Score: 516
Period size: 44 Copynumber: 21.6 Consensus size: 45
19047677 GGCAGTGGAA
* * * * * *
19047687 TAGATTGAAGA-AGCAGATCTTGTCTTCATGTATTG-GCGTGAAG
1 TAGATCGAAGATAACAGATCTTGTCTTCCTATATTGATCGCGAAG
** * * * *
19047730 TAGATCGAAGATAGTAGGTCCTATCTTCCTATATTGATAG-GAAG
1 TAGATCGAAGATAACAGATCTTGTCTTCCTATATTGATCGCGAAG
* * * * * *
19047774 TGGATCCAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAG
1 TAGATCGAAGATAACAGATCTTGTCTTCCTATATTGATCGCGAAG
* * * * *
19047818 TAGATCGCAGA-AAGCAGATCTTGTCTTCATGTATTG-GCGTGAAG
1 TAGATCGAAGATAA-CAGATCTTGTCTTCCTATATTGATCGCGAAG
** * * * *
19047862 TAGATCGAAGATAGTAGGTCCTATCTTCCTATATTGATAG-GAAG
1 TAGATCGAAGATAACAGATCTTGTCTTCCTATATTGATCGCGAAG
* * * * * *
19047906 TGGATCCAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAG
1 TAGATCGAAGATAACAGATCTTGTCTTCCTATATTGATCGCGAAG
* * * * *
19047950 TAGATCGCAGA-AAGCAGATCTTGTCTTCATGTATTG-GCGTGAAG
1 TAGATCGAAGATAA-CAGATCTTGTCTTCCTATATTGATCGCGAAG
** * * *
19047994 TAGATCGAAGATAGTAGGTCCTATCTTCCTATATTGAT-G-GAAG
1 TAGATCGAAGATAACAGATCTTGTCTTCCTATATTGATCGCGAAG
* * * * * *
19048037 TGGATCTAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAG
1 TAGATCGAAGATAACAGATCTTGTCTTCCTATATTGATCGCGAAG
* * * * *
19048081 TAGATCGCAGA-AAGCAGATCTTGTCTTCATGTATTG-GCGTGAAG
1 TAGATCGAAGATAA-CAGATCTTGTCTTCCTATATTGATCGCGAAG
** * * * *
19048125 TAGATCGAAGATAGTAGGTCCTATCTTCCTATATTGATAG-GAAG
1 TAGATCGAAGATAACAGATCTTGTCTTCCTATATTGATCGCGAAG
* * * * * *
19048169 TGGATCCAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAG
1 TAGATCGAAGATAACAGATCTTGTCTTCCTATATTGATCGCGAAG
* * * * *
19048213 TAGATCGCAGA-AAGCAGATCTTGTCTTCATGTATTG-GCGTGAAG
1 TAGATCGAAGATAA-CAGATCTTGTCTTCCTATATTGATCGCGAAG
** * * * *
19048257 TAGATCGAAGATAGTAGGTCCTATCTTCCTATATTGATAG-GAAG
1 TAGATCGAAGATAACAGATCTTGTCTTCCTATATTGATCGCGAAG
* * * * *
19048301 TGGATCCAAGAT-ACAGATCTTGTCTTCCCATATTGGTGGCGAAG
1 TAGATCGAAGATAACAGATCTTGTCTTCCTATATTGATCGCGAAG
* * * *
19048345 TAGATCGAAGA-AAGCAGATCTTGTCTTCATGTATTG-GCGTGAAG
1 TAGATCGAAGATAA-CAGATCTTGTCTTCCTATATTGATCGCGAAG
* * * * * *
19048389 TAGATCAAAGATAACAGGTCCTATCTTCCTATAATGATTG-GAAG
1 TAGATCGAAGATAACAGATCTTGTCTTCCTATATTGATCGCGAAG
* * ** * * *
19048433 TGGATCGACGA-CGCAGATCTTGTCTTCCCATATTGGTGGCGAAG
1 TAGATCGAAGATAACAGATCTTGTCTTCCTATATTGATCGCGAAG
* * * * *
19048477 TAGATCGCAGA-AAGCAGATCTTGTCTTCATGTATTG-GCGTGAAG
1 TAGATCGAAGATAA-CAGATCTTGTCTTCCTATATTGATCGCGAAG
* * * * * *
19048521 TAGATCAAAGATAACAGGTCCTATCTTCCTATAATGATTG-GAAG
1 TAGATCGAAGATAACAGATCTTGTCTTCCTATATTGATCGCGAAG
* * ** * * * * **
19048565 TGGATCGACGA-CGCAGATTTTGTCTTCCCATATTGGTGGTAAAG
1 TAGATCGAAGATAACAGATCTTGTCTTCCTATATTGATCGCGAAG
*
19048609 TAGATCGAAGA-AAGTAGATCTTGTCT
1 TAGATCGAAGATAA-CAGATCTTGTCT
19048635 CATGTATTTG
Statistics
Matches: 668, Mismatches: 203, Indels: 66
0.71 0.22 0.07
Matches are distributed among these distances:
42 19 0.03
43 141 0.21
44 370 0.55
45 138 0.21
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (45 bp):
TAGATCGAAGATAACAGATCTTGTCTTCCTATATTGATCGCGAAG
Found at i:19048640 original size:395 final size:395
Alignment explanation
Indices: 19047697--19048663 Score: 1702
Period size: 395 Copynumber: 2.4 Consensus size: 395
19047687 TAGATTGAAG
19047697 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTAT
1 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTAT
19047762 ATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
66 ATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
19047827 GAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCT
131 GAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCT
*
19047892 ATATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCG
196 ATATTGATAGGAAGTGGATCCAAGATACAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCG
* * **
19047957 CAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTC
261 AAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTATCTTC
* * *
19048022 CTATATTGATGGAAGTGGATCTAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
326 CTATAATGATGGAAGTGGATCGAAGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
19048087 GCAGA
391 GCAGA
19048092 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTAT
1 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTAT
19048157 ATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
66 ATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
19048222 GAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCT
131 GAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCT
19048287 ATATTGATAGGAAGTGGATCCAAGATACAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCG
196 ATATTGATAGGAAGTGGATCCAAGATACAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCG
19048352 AAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTATCTTC
261 AAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTATCTTC
*
19048417 CTATAATGATTGGAAGTGGATCGACGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGAT
326 CTATAATGA-TGGAAGTGGATCGAAGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGAT
19048482 CGCAGA
390 CGCAGA
* **
19048488 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTAT
1 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTAT
* * * * * * ** *
19048553 AATGATTGGAAGTGGATCGACGACGCAGATTTTGTCTTCCCATATTGGTGGTAAAGTAGATCGAA
66 ATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
* * *
19048618 GAAAGTAGATCTTGTC-TCATGTATTTGCATGAAGTAGATCGAAGAT
131 GAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
19048664 TACAGTCTTA
Statistics
Matches: 547, Mismatches: 24, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
395 356 0.65
396 191 0.35
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (395 bp):
AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTAT
ATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCA
GAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCT
ATATTGATAGGAAGTGGATCCAAGATACAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCG
AAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTATCTTC
CTATAATGATGGAAGTGGATCGAAGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
GCAGA
Found at i:19050801 original size:14 final size:15
Alignment explanation
Indices: 19050768--19050819 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
19050758 TATTATTTTC
*
19050768 CTATTATTTATTATA
1 CTATTATTTATTACA
*
19050783 CTATT-TTTTTTACA
1 CTATTATTTATTACA
*
19050797 CTATTATTTATTATA
1 CTATTATTTATTACA
19050812 CTTATTAT
1 C-TATTAT
19050820 ATCATTTTCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
14 12 0.39
15 13 0.42
16 6 0.19
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.62
Consensus pattern (15 bp):
CTATTATTTATTACA
Found at i:19055304 original size:43 final size:43
Alignment explanation
Indices: 19055207--19055328 Score: 117
Period size: 43 Copynumber: 2.8 Consensus size: 43
19055197 CTCGTACAAC
* * * *
19055207 GCCAACGTCCCAGACGTGGTCTTACATGTAAACATATATCGAT
1 GCCAACGTCCCAGAAGTGGTCTTACACGTAAACACAAATCGAT
*
19055250 GCC-ACTATCCCAGATAG-GGTCTTACACGTAAACACAAA-CTGAT
1 GCCAAC-GTCCCAGA-AGTGGTCTTACACGTAAACACAAATC-GAT
* *
19055293 GCCAACGTCCCAGACGTGGTCTTTCACG-ATAACACA
1 GCCAACGTCCCAGAAGTGGTCTTACACGTA-AACACA
19055329 TATCAAAAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
42 5 0.08
43 57 0.88
44 3 0.05
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (43 bp):
GCCAACGTCCCAGAAGTGGTCTTACACGTAAACACAAATCGAT
Found at i:19056237 original size:3 final size:3
Alignment explanation
Indices: 19056231--19056280 Score: 63
Period size: 3 Copynumber: 18.0 Consensus size: 3
19056221 TTATAACATA
*
19056231 TAT TAT TA- TAT TAT TAT TAT T-T TA- AAT T-T TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
19056275 TAT TAT
1 TAT TAT
19056281 ATATAAATCA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
2 7 0.17
3 34 0.83
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:19064820 original size:50 final size:50
Alignment explanation
Indices: 19064739--19065281 Score: 390
Period size: 50 Copynumber: 10.9 Consensus size: 50
19064729 GTGATGTCGA
* ** * * * * *
19064739 GGAAGCAATATTCGCTATTGTAGCTTCAATCTGTTCCACTACACTGCCTG
1 GGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAATGCCGG
* * * * * **
19064789 GGAAGTAAGATTCGCTGTTGTAGTTTTAATCT-TTCTAACTGCAATATCGG
1 GGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTC-CACTGCAATGCCGG
* * * *** **
19064839 GGAAGCAAGATTCGCCGTTGTGGCGTTAATCTATTCCACTACACCACTTG
1 GGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAATGCCGG
* * ** * * ** *
19064889 AGAAGTAAGATTCGTTGTTGTAGCTTTAATCTTTTTAACTGCAATGGCGG
1 GGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAATGCCGG
* * * ** *
19064939 GGAAGCAAGGTTTGCCATTGTGGCTTTAATCTGTTCCACTGCACCGCTTGG
1 GGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAATGC-CGG
* * * ** *
19064990 GG-AGTAAGATTCGCCGCTGTGGCTTTAATCTTTTTAACTGCAATGTCGG
1 GGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAATGCCGG
* * * ** * *
19065039 GGAAGCAAGATTCACCGATGTGGCTTTAATCTATTCCACTGCACCGTCAG
1 GGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAATGCCGG
* * * * ** *
19065089 GGAAGTAGGATTCGCCGCTGTGGCTTTAATCTTTTTAACTGCAATGTCGG
1 GGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAATGCCGG
* * * *
19065139 GGAAGCAAGATTCACTGATGTGGCTTTAATCTGTTCCACTGC-ATCGCCTG
1 GGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAAT-GCCGG
** * * * ** *
19065189 GGAATTAGGATTCGCCGCTGTGGCTTTAATCTTTTTTACTGCAATGTCGG
1 GGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAATGCCGG
* *
19065239 GGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCA
1 GGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCA
19065282 TCGCTTGGGA
Statistics
Matches: 373, Mismatches: 114, Indels: 12
0.75 0.23 0.02
Matches are distributed among these distances:
49 9 0.02
50 355 0.95
51 9 0.02
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.33
Consensus pattern (50 bp):
GGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAATGCCGG
Found at i:19064846 original size:100 final size:99
Alignment explanation
Indices: 19064722--19065292 Score: 683
Period size: 100 Copynumber: 5.7 Consensus size: 99
19064712 CCTTAATATG
** * * * * * * *
19064722 TTTAACTGTGATGTCGAGGAAGCAATATTCGCTATTGTAGCTTCAATCTGTTCCACTACACTGCC
1 TTTAACTGCAATGTCGGGGAAGCAAGATTCGCCA-TGTGGCTTTAATCTGTTCCACTGCACCGCC
* * * *
19064787 TGGGAAGTAAGATTCGCTGTTGTAGTTTTAATCTT
65 TGGGAAGTAAGATTCGCCGCTGTGGCTTTAATCTT
* * * * * * * *
19064822 TCTAACTGCAATATCGGGGAAGCAAGATTCGCCGTTGTGGCGTTAATCTATTCCACTACACCACT
1 TTTAACTGCAATGTCGGGGAAGCAAGATTCGCC-ATGTGGCTTTAATCTGTTCCACTGCACCGCC
* ** * *
19064887 TGAGAAGTAAGATTCGTTGTTGTAGCTTTAATCTT
65 TGGGAAGTAAGATTCGCCGCTGTGGCTTTAATCTT
* * * *
19064922 TTTAACTGCAATGGCGGGGAAGCAAGGTTTGCCATTGTGGCTTTAATCTGTTCCACTGCACCGCT
1 TTTAACTGCAATGTCGGGGAAGCAAGATTCGCCA-TGTGGCTTTAATCTGTTCCACTGCACCGCC
*
19064987 TGGGGAGTAAGATTCGCCGCTGTGGCTTTAATCTT
65 TGGGAAGTAAGATTCGCCGCTGTGGCTTTAATCTT
* * *
19065022 TTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTATTCCACTGCACCGTC
1 TTTAACTGCAATGTCGGGGAAGCAAGATTCGCC-ATGTGGCTTTAATCTGTTCCACTGCACCGCC
* *
19065087 AGGGAAGTAGGATTCGCCGCTGTGGCTTTAATCTT
65 TGGGAAGTAAGATTCGCCGCTGTGGCTTTAATCTT
* * *
19065122 TTTAACTGCAATGTCGGGGAAGCAAGATTCACTGATGTGGCTTTAATCTGTTCCACTGCATCGCC
1 TTTAACTGCAATGTCGGGGAAGCAAGATTCGC-CATGTGGCTTTAATCTGTTCCACTGCACCGCC
* *
19065187 TGGGAATTAGGATTCGCCGCTGTGGCTTTAATCTT
65 TGGGAAGTAAGATTCGCCGCTGTGGCTTTAATCTT
* * * *
19065222 TTTTACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCATCGCT
1 TTTAACTGCAATGTCGGGGAAGCAAGATTCGCC-ATGTGGCTTTAATCTGTTCCACTGCACCGCC
19065287 TGGGAA
65 TGGGAA
19065293 ATAAAACTGG
Statistics
Matches: 413, Mismatches: 53, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
100 412 1.00
101 1 0.00
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (99 bp):
TTTAACTGCAATGTCGGGGAAGCAAGATTCGCCATGTGGCTTTAATCTGTTCCACTGCACCGCCT
GGGAAGTAAGATTCGCCGCTGTGGCTTTAATCTT
Found at i:19066325 original size:6 final size:6
Alignment explanation
Indices: 19066300--19066364 Score: 51
Period size: 6 Copynumber: 10.8 Consensus size: 6
19066290 CTCTTCTTTC
* * * * * * *
19066300 ATTTTC ATTTTG ACTTTG ATTTTG ATTTTT CTTTTT CTTCTT- TTTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATT-TTG ATTTTG
19066348 ATTTTG ATTTTG ATTTT
1 ATTTTG ATTTTG ATTTT
19066365 TTTTAATTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
5 2 0.04
6 46 0.92
7 2 0.04
ACGTcount: A:0.12, C:0.08, G:0.09, T:0.71
Consensus pattern (6 bp):
ATTTTG
Found at i:19066375 original size:30 final size:30
Alignment explanation
Indices: 19066314--19066375 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
19066304 TCATTTTGAC
** **
19066314 TTTGATTTTGATTTTTCTTTTTCTTCTTTT
1 TTTGATTTTGATTTTGATTTTTCTTAATTT
*
19066344 TTTGATTTTGATTTTGATTTTTTTTAATTT
1 TTTGATTTTGATTTTGATTTTTCTTAATTT
19066374 TT
1 TT
19066376 AATTTTTAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.11, C:0.05, G:0.08, T:0.76
Consensus pattern (30 bp):
TTTGATTTTGATTTTGATTTTTCTTAATTT
Found at i:19066449 original size:20 final size:20
Alignment explanation
Indices: 19066402--19066458 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
19066392 TTTTCCTTTC
*
19066402 TTTTTTCTTTTTTTATTGCT
1 TTTTTTATTTTTTTATTGCT
*
19066422 TTTTTTATTTTTTTCTT-CT
1 TTTTTTATTTTTTTATTGCT
*
19066441 TTTTATTATTTATTTATT
1 TTTT-TTATTTTTTTATT
19066459 TATTGAATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 6 0.19
20 26 0.81
ACGTcount: A:0.11, C:0.07, G:0.02, T:0.81
Consensus pattern (20 bp):
TTTTTTATTTTTTTATTGCT
Found at i:19066456 original size:28 final size:28
Alignment explanation
Indices: 19066402--19066459 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
19066392 TTTTCCTTTC
* *
19066402 TTTTTTCTTTTTTTATTGCTTTTTTTAT
1 TTTTTTCTTTTTTTATTGATTTATTTAT
19066430 TTTTTTCTTCTTTTTATT-ATTTATTTAT
1 TTTTTTCTT-TTTTTATTGATTTATTTAT
19066458 TT
1 TT
19066460 ATTGAATATG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
28 19 0.70
29 8 0.30
ACGTcount: A:0.10, C:0.07, G:0.02, T:0.81
Consensus pattern (28 bp):
TTTTTTCTTTTTTTATTGATTTATTTAT
Found at i:19070781 original size:102 final size:102
Alignment explanation
Indices: 19070659--19070859 Score: 348
Period size: 102 Copynumber: 2.0 Consensus size: 102
19070649 CTAATGAGTC
* **
19070659 GGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACAGTGGGTTCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACAGTGGAATCAGCACTTAGCAACCA
*
19070724 CCAATGATTCGAGGAATCAGCACTTAGCAACCCCTCG
66 CCAATGAGTCGAGGAATCAGCACTTAGCAACCCCTCG
*
19070761 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACAGTGGAATCAGCACTTAGCAACCA
*
19070826 CCAATGAGTCGGGGAATCAGCACTTAGCAACCCC
66 CCAATGAGTCGAGGAATCAGCACTTAGCAACCCC
19070860 CTTCAAATTT
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
102 93 1.00
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.20
Consensus pattern (102 bp):
GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACAGTGGAATCAGCACTTAGCAACCA
CCAATGAGTCGAGGAATCAGCACTTAGCAACCCCTCG
Found at i:19070822 original size:42 final size:41
Alignment explanation
Indices: 19070763--19070899 Score: 173
Period size: 42 Copynumber: 3.5 Consensus size: 41
19070753 ACCCCTCGGG
19070763 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGT
1 GGAATCAGCACTTAGCAACCCCCTTCA-ATTTAAGATACGGT
* *
19070805 GGAATCAGCACTTAGCAA-CCAC--CAA--TGAG-T-CGG-
1 GGAATCAGCACTTAGCAACCCCCTTCAATTTAAGATACGGT
*
19070838 GGAATCAGCACTTAGCAACCCCCTTCAAATTTAAAATACGGT
1 GGAATCAGCACTTAGCAACCCCCTTC-AATTTAAGATACGGT
19070880 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
19070900 ACCAATGAGT
Statistics
Matches: 81, Mismatches: 5, Indels: 18
0.78 0.05 0.17
Matches are distributed among these distances:
33 18 0.22
34 6 0.07
35 1 0.01
36 4 0.05
37 2 0.02
38 1 0.01
39 4 0.05
40 1 0.01
41 6 0.07
42 38 0.47
ACGTcount: A:0.34, C:0.28, G:0.18, T:0.20
Consensus pattern (41 bp):
GGAATCAGCACTTAGCAACCCCCTTCAATTTAAGATACGGT
Found at i:19070855 original size:75 final size:75
Alignment explanation
Indices: 19070761--19070934 Score: 330
Period size: 75 Copynumber: 2.3 Consensus size: 75
19070751 CAACCCCTCG
* *
19070761 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCAAATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
19070826 CCAATGAGTC
66 CCAATGAGTC
19070836 GGGGAATCAGCACTTAGCAACCCCCTTCAAATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCAAATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
19070901 CCAATGAGTC
66 CCAATGAGTC
19070911 GGGGAATCAGCACTTAGCAACCCC
1 GGGGAATCAGCACTTAGCAACCCC
19070935 TTGGGGGAAT
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
75 97 1.00
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.19
Consensus pattern (75 bp):
GGGGAATCAGCACTTAGCAACCCCCTTCAAATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
CCAATGAGTC
Found at i:19070920 original size:177 final size:177
Alignment explanation
Indices: 19070624--19070964 Score: 583
Period size: 177 Copynumber: 1.9 Consensus size: 177
19070614 TAACCGTTAT
* * * *
19070624 CGGTGGATTCAGCACTTAGCAACCACTAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCCTTCAA
* ** *
19070689 ATTTAAGATACAGTGGGTTCAGCACTTAGCAACCACCAATGATTCGAGGAATCAGCACTTAGCAA
66 ATTTAAAATACAGTGGAATCAGCACTTAGCAACCACCAATGAGTCGAGGAATCAGCACTTAGCAA
19070754 CCCCTCGGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATA
131 CCCCTCGGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATA
19070801 CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCCTTCAA
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCCTTCAA
* *
19070866 ATTTAAAATACGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAA
66 ATTTAAAATACAGTGGAATCAGCACTTAGCAACCACCAATGAGTCGAGGAATCAGCACTTAGCAA
*
19070931 CCCCTTGGGGGAATCAGCACTTAGCAACCCCCTT
131 CCCCTCGGGGGAATCAGCACTTAGCAACCCCCTT
19070965 TTTATTCAAT
Statistics
Matches: 153, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
177 153 1.00
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.21
Consensus pattern (177 bp):
CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCCTTCAA
ATTTAAAATACAGTGGAATCAGCACTTAGCAACCACCAATGAGTCGAGGAATCAGCACTTAGCAA
CCCCTCGGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATA
Found at i:19079213 original size:7 final size:6
Alignment explanation
Indices: 19079179--19079212 Score: 59
Period size: 6 Copynumber: 5.5 Consensus size: 6
19079169 TCTTTTAGGC
19079179 TTTCTTT TTTCTT TTTCTT TTTCTT TTTCTT TTT
1 TTTC-TT TTTCTT TTTCTT TTTCTT TTTCTT TTT
19079213 TGTACATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 23 0.85
7 4 0.15
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTCTT
Found at i:19079305 original size:18 final size:19
Alignment explanation
Indices: 19079282--19079325 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
19079272 AGATTCGATC
*
19079282 TTTATACT-ACTTTATTTT
1 TTTATACTAACTTGATTTT
19079300 TTTATA-TAACTTGATTTT
1 TTTATACTAACTTGATTTT
*
19079318 TTTTTACT
1 TTTATACT
19079326 TTTATAATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 1 0.05
18 20 0.91
19 1 0.05
ACGTcount: A:0.23, C:0.09, G:0.02, T:0.66
Consensus pattern (19 bp):
TTTATACTAACTTGATTTT
Found at i:19080079 original size:61 final size:61
Alignment explanation
Indices: 19079955--19080081 Score: 155
Period size: 61 Copynumber: 2.1 Consensus size: 61
19079945 TTAGACATTA
** * * *
19079955 ATAGAATTTGTAAATCTGAAGGGTTAAATTTATTGAATTATTAAGAATTGGGAGCAAACTG
1 ATAGAATTCATAAATCTGAAGGGTTAAATTTATTGAATTATTAAGAATTAGAACCAAACTG
* * * * **
19080016 ATAGAATTCATAAATGTGGAGGGTTAAATTTGTTGAATTATTTAGAATTAGAACCAATTTG
1 ATAGAATTCATAAATCTGAAGGGTTAAATTTATTGAATTATTAAGAATTAGAACCAAACTG
19080077 ATAGA
1 ATAGA
19080082 CTATGTATGT
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
61 55 1.00
ACGTcount: A:0.39, C:0.05, G:0.20, T:0.35
Consensus pattern (61 bp):
ATAGAATTCATAAATCTGAAGGGTTAAATTTATTGAATTATTAAGAATTAGAACCAAACTG
Found at i:19083842 original size:25 final size:25
Alignment explanation
Indices: 19083814--19083862 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
19083804 TTTTTATTAA
* *
19083814 TTTATACATTCTAATTTTTAAAATT
1 TTTATACATTCTAAATTTCAAAATT
* *
19083839 TTTATATATTTTAAATTTCAAAAT
1 TTTATACATTCTAAATTTCAAAAT
19083863 AATAATATAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (25 bp):
TTTATACATTCTAAATTTCAAAATT
Found at i:19091315 original size:272 final size:273
Alignment explanation
Indices: 19090818--19091359 Score: 1005
Period size: 272 Copynumber: 2.0 Consensus size: 273
19090808 CTCAAATTTT
*
19090818 AAGGATTGCGATGGAGTGACTTGCTTTTGTCGCTCTCAAGTTAAAATCACAATTTCCAACATAAA
1 AAGGATTGCGATGGAGTGACTTGCTTTTGTCCCTCTCAAGTTAAAATCACAATTTCCAACATAAA
19090883 TTCTCAATAAAAAAACATATGGGTGGATAAAATATAATAAAAAAAATTAAAACAATATTTAAGGC
66 TTCTCAATAAAAAAACATATGGGTGGATAAAATATAATAAAAAAAATTAAAACAATATTTAAGGC
*
19090948 GTGAATCACTTTCTTTAAGGACCGACATTTAAAGCATGCATTGATATATGTTCCTATTGTATTAT
131 ATGAATCACTTTCTTTAAGGACCGACATTTAAAGCATGCATTGATATATGTTCCTATTGTATTAT
*
19091013 TACTAAGCTAGCCTAAATATCAACGTTGTAAAAAAATGTTATTTAAATGGGATATATATAAAATT
196 TACTAAGCTAGCCTAAATATCAAAGTTGTAAAAAAATGTTATTTAAATGGGATATATATAAAATT
19091078 ATACATGAATCTA
261 ATACATGAATCTA
19091091 AAGGATTGCGATGGAGTGACTTGCTTTTGTCCCTCTCAAGTTAAAATCACAATTTCCAACATAAA
1 AAGGATTGCGATGGAGTGACTTGCTTTTGTCCCTCTCAAGTTAAAATCACAATTTCCAACATAAA
19091156 TTCTCAATAAAAAAACATATGGGTGGATAAAATATAA-AAAAAAAATTAAAACAATATTTAAGGC
66 TTCTCAATAAAAAAACATATGGGTGGATAAAATATAATAAAAAAAATTAAAACAATATTTAAGGC
* *
19091220 ATGAATCACTTTCTTTAAGGACCGGCATTTAAAGCATGCCTTGATATATGTTCCTATTGTATTAT
131 ATGAATCACTTTCTTTAAGGACCGACATTTAAAGCATGCATTGATATATGTTCCTATTGTATTAT
* * *
19091285 TACTAAGCTAGCCTAACTATCAAAGTTGTAAAAAATTGTTATTTAAATGGGATATTTATAAAATT
196 TACTAAGCTAGCCTAAATATCAAAGTTGTAAAAAAATGTTATTTAAATGGGATATATATAAAATT
19091350 ATACATGAAT
261 ATACATGAAT
19091360 TTTCATTCAA
Statistics
Matches: 261, Mismatches: 8, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
272 160 0.61
273 101 0.39
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33
Consensus pattern (273 bp):
AAGGATTGCGATGGAGTGACTTGCTTTTGTCCCTCTCAAGTTAAAATCACAATTTCCAACATAAA
TTCTCAATAAAAAAACATATGGGTGGATAAAATATAATAAAAAAAATTAAAACAATATTTAAGGC
ATGAATCACTTTCTTTAAGGACCGACATTTAAAGCATGCATTGATATATGTTCCTATTGTATTAT
TACTAAGCTAGCCTAAATATCAAAGTTGTAAAAAAATGTTATTTAAATGGGATATATATAAAATT
ATACATGAATCTA
Found at i:19095860 original size:17 final size:18
Alignment explanation
Indices: 19095821--19095861 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
19095811 TTTTATAAAT
19095821 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGATA
19095839 TGTGAATTA-ATATTGA-A
1 TGTGAATTATAT-TTGATA
19095856 TGTGAA
1 TGTGAA
19095862 AGGAAAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.44
Consensus pattern (18 bp):
TGTGAATTATATTTGATA
Found at i:19095991 original size:8 final size:8
Alignment explanation
Indices: 19095978--19096006 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
19095968 CACTAGAGAT
19095978 CAGTGTTA
1 CAGTGTTA
19095986 CAGTGTTA
1 CAGTGTTA
19095994 CAGTGTTA
1 CAGTGTTA
19096002 CAGTG
1 CAGTG
19096007 AGTTCCGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (8 bp):
CAGTGTTA
Found at i:19096122 original size:23 final size:23
Alignment explanation
Indices: 19096094--19096168 Score: 105
Period size: 23 Copynumber: 3.3 Consensus size: 23
19096084 GTGTTATTGA
* *
19096094 TCAGTGGTAGCTTCTGCTACGTT
1 TCAGTGGTAGCTTCGGCTACATT
*
19096117 TTAGTGGTAGCTTCGGCTACATT
1 TCAGTGGTAGCTTCGGCTACATT
* *
19096140 TCAGTGGTAGCTACGGCTACATA
1 TCAGTGGTAGCTTCGGCTACATT
19096163 TCAGTG
1 TCAGTG
19096169 TGGCACTTAT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.19, C:0.20, G:0.27, T:0.35
Consensus pattern (23 bp):
TCAGTGGTAGCTTCGGCTACATT
Found at i:19104413 original size:14 final size:14
Alignment explanation
Indices: 19104387--19104420 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 14
19104377 AATTCTTTAA
19104387 ATTTATAAAAAAATAT
1 ATTT-TAAAAAAA-AT
19104403 ATTTTAAAAAAAAT
1 ATTTTAAAAAAAAT
19104417 ATTT
1 ATTT
19104421 CATTGAAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.33
15 8 0.44
16 4 0.22
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
ATTTTAAAAAAAAT
Found at i:19112298 original size:18 final size:18
Alignment explanation
Indices: 19112275--19112309 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
19112265 ACCCGATCCA
* *
19112275 AACCCAAGTATCCAACCC
1 AACCCAAATACCCAACCC
19112293 AACCCAAATACCCAACC
1 AACCCAAATACCCAACC
19112310 TAACTCAATC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.46, G:0.03, T:0.09
Consensus pattern (18 bp):
AACCCAAATACCCAACCC
Found at i:19112454 original size:9 final size:9
Alignment explanation
Indices: 19112440--19112479 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
19112430 GTAGTGATTC
19112440 AATTCGGTT
1 AATTCGGTT
*
19112449 AATTCGGGT
1 AATTCGGTT
*
19112458 AATTAGGTT
1 AATTCGGTT
19112467 AATTCGGTT
1 AATTCGGTT
19112476 AATT
1 AATT
19112480 TTTAACCAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (9 bp):
AATTCGGTT
Found at i:19120859 original size:15 final size:14
Alignment explanation
Indices: 19120839--19120869 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 14
19120829 AAATAAACAT
19120839 ATTAAATTAAATTAA
1 ATTAAATT-AATTAA
19120854 ATTAAATTAATTAA
1 ATTAAATTAATTAA
19120868 AT
1 AT
19120870 AATTTCCCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
ATTAAATTAATTAA
Found at i:19120867 original size:4 final size:5
Alignment explanation
Indices: 19120839--19120869 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
19120829 AAATAAACAT
19120839 ATTAA ATTAA ATTAA ATTAA ATT-A ATTAA AT
1 ATTAA ATTAA ATTAA ATTAA ATTAA ATTAA AT
19120870 AATTTCCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
ATTAA
Found at i:19124869 original size:17 final size:17
Alignment explanation
Indices: 19124849--19124896 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
19124839 ATAAAAAATA
19124849 TTTTT-AAATAAATTACT
1 TTTTTAAAATAAA-TACT
*
19124866 TTTTTAAAGATAAATATT
1 TTTTTAAA-ATAAATACT
*
19124884 TTTTTCAAATAAA
1 TTTTTAAAATAAA
19124897 AATTTAGTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 10 0.37
18 12 0.44
19 5 0.19
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.50
Consensus pattern (17 bp):
TTTTTAAAATAAATACT
Found at i:19124901 original size:17 final size:16
Alignment explanation
Indices: 19124831--19124901 Score: 52
Period size: 17 Copynumber: 4.1 Consensus size: 16
19124821 TTTAGTATTA
*
19124831 TTTTTAGAATAAAAAATA
1 TTTTTA-AAT-AAAAATT
*
19124849 TTTTTAAATAAATTACTT
1 TTTTTAAATAAA--AATT
* *
19124867 TTTTAAAGATAAATATT
1 TTTTTAA-ATAAAAATT
19124884 TTTTTCAAATAAAAATT
1 TTTTT-AAATAAAAATT
19124901 T
1 T
19124902 AGTTCAAAAG
Statistics
Matches: 42, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
16 3 0.07
17 18 0.43
18 16 0.38
19 5 0.12
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (16 bp):
TTTTTAAATAAAAATT
Found at i:19126414 original size:3 final size:3
Alignment explanation
Indices: 19126406--19126430 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
19126396 TTAAAATTAA
19126406 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
19126431 CAATACATGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:19126889 original size:32 final size:31
Alignment explanation
Indices: 19126844--19126939 Score: 174
Period size: 31 Copynumber: 3.1 Consensus size: 31
19126834 CTTAGATAAT
19126844 TTTAAAGAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
19126875 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
*
19126907 TTGAAAGAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
19126938 TT
1 TT
19126940 GTAATTTGCC
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
31 33 0.52
32 30 0.48
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.46
Consensus pattern (31 bp):
TTTAAAGAGTTTTATTAGGATTCAATTACTC
Found at i:19127297 original size:29 final size:27
Alignment explanation
Indices: 19127247--19127306 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 27
19127237 ATCCTTTTTT
*
19127247 ATTTTATTTATTTATTTATTATTTAACTA
1 ATTTTATTTATTTAGTTATTATTT--CTA
*
19127276 ATTTTATTTATTCTCGTT-TTATTTCTA
1 ATTTTATTTATT-TAGTTATTATTTCTA
19127303 ATTT
1 ATTT
19127307 GTGTTTCTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 7 0.25
29 18 0.64
30 3 0.11
ACGTcount: A:0.25, C:0.07, G:0.02, T:0.67
Consensus pattern (27 bp):
ATTTTATTTATTTAGTTATTATTTCTA
Found at i:19132936 original size:32 final size:31
Alignment explanation
Indices: 19132891--19132986 Score: 165
Period size: 31 Copynumber: 3.1 Consensus size: 31
19132881 CTTAGATAAT
19132891 TTTAAAGAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
*
19132922 TTTAAAGAGTTTTTATTAAGATTCAATTACTC
1 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
*
19132954 TTGAAAGAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
19132985 TT
1 TT
19132987 GTAATTTGCC
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
31 32 0.52
32 29 0.48
ACGTcount: A:0.32, C:0.09, G:0.12, T:0.46
Consensus pattern (31 bp):
TTTAAAGAGTTTTATTAGGATTCAATTACTC
Found at i:19134069 original size:23 final size:22
Alignment explanation
Indices: 19134041--19134084 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
19134031 AATCTACATA
**
19134041 AAATAAATTAATAAGTAATTTAT
1 AAATAAACAAATAA-TAATTTAT
19134064 AAATAAACAAATAATAATTTA
1 AAATAAACAAATAATAATTTA
19134085 GACACATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.34
Consensus pattern (22 bp):
AAATAAACAAATAATAATTTAT
Found at i:19134502 original size:15 final size:16
Alignment explanation
Indices: 19134482--19134511 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
19134472 GTTTTTCTAC
19134482 TTTAGTTT-CTTTTTG
1 TTTAGTTTGCTTTTTG
19134497 TTTAGTTTGCTTTTT
1 TTTAGTTTGCTTTTT
19134512 AGTGTTGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.07, C:0.07, G:0.13, T:0.73
Consensus pattern (16 bp):
TTTAGTTTGCTTTTTG
Found at i:19135422 original size:22 final size:22
Alignment explanation
Indices: 19135391--19135452 Score: 65
Period size: 22 Copynumber: 2.7 Consensus size: 22
19135381 AAAATAAATT
19135391 GGAAAGAAAGGGAAAAAATAAA-G
1 GGAAA-AAAGGGAAAAAA-AAAGG
*
19135414 GGAGAAAA-GGAAAGAAAAAAGG
1 GGAAAAAAGGGAAA-AAAAAAGG
19135436 GGAAAAAAGAGGAAAAA
1 GGAAAAAAG-GGAAAAA
19135453 CCTCCCATGC
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
21 8 0.24
22 14 0.42
23 6 0.18
24 5 0.15
ACGTcount: A:0.66, C:0.00, G:0.32, T:0.02
Consensus pattern (22 bp):
GGAAAAAAGGGAAAAAAAAAGG
Found at i:19135442 original size:21 final size:21
Alignment explanation
Indices: 19135395--19135441 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
19135385 TAAATTGGAA
*
19135395 AGAAAGGGAAAAAATAAAGGG
1 AGAAAAGGAAAAAATAAAGGG
19135416 AGAAAAGGAAAGAAA-AAAGGG
1 AGAAAAGGAAA-AAATAAAGGG
19135437 -GAAAA
1 AGAAAA
19135442 AAGAGGAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 5 0.21
21 16 0.67
22 3 0.12
ACGTcount: A:0.66, C:0.00, G:0.32, T:0.02
Consensus pattern (21 bp):
AGAAAAGGAAAAAATAAAGGG
Found at i:19136257 original size:16 final size:16
Alignment explanation
Indices: 19136236--19136282 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
19136226 TGAATGTGTG
19136236 ATATATCAAGTATGTT
1 ATATATCAAGTATGTT
*
19136252 ATATAT---G--TGTG
1 ATATATCAAGTATGTT
19136263 ATATATCAAGTATGTT
1 ATATATCAAGTATGTT
19136279 ATAT
1 ATAT
19136283 GAAAGTGATA
Statistics
Matches: 24, Mismatches: 2, Indels: 10
0.67 0.06 0.28
Matches are distributed among these distances:
11 9 0.38
13 1 0.04
14 1 0.04
16 13 0.54
ACGTcount: A:0.36, C:0.04, G:0.15, T:0.45
Consensus pattern (16 bp):
ATATATCAAGTATGTT
Found at i:19136267 original size:27 final size:27
Alignment explanation
Indices: 19136229--19136282 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
19136219 AAATTAGTGA
19136229 ATGTGTGATATATCAAGTATGTTATAT
1 ATGTGTGATATATCAAGTATGTTATAT
19136256 ATGTGTGATATATCAAGTATGTTATAT
1 ATGTGTGATATATCAAGTATGTTATAT
19136283 GAAAGTGATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.04, G:0.19, T:0.44
Consensus pattern (27 bp):
ATGTGTGATATATCAAGTATGTTATAT
Found at i:19136290 original size:27 final size:27
Alignment explanation
Indices: 19136233--19136293 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
19136223 TAGTGAATGT
**
19136233 GTGATATATCAAGTATGTTATATATGT
1 GTGATATATCAAGTATGTTATATATAA
19136260 GTGATATATCAAGTATGTTATATGA-AA
1 GTGATATATCAAGTATGTTATAT-ATAA
19136287 GTGATAT
1 GTGATAT
19136294 GTGAATAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.36, C:0.03, G:0.20, T:0.41
Consensus pattern (27 bp):
GTGATATATCAAGTATGTTATATATAA
Found at i:19138282 original size:3 final size:3
Alignment explanation
Indices: 19138276--19138314 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
19138266 TATATAGTAG
19138276 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
19138315 ATGGGACTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:19140737 original size:21 final size:20
Alignment explanation
Indices: 19140711--19140763 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
19140701 AAAGTTGTTG
*
19140711 TATATTATAAAATATTATTAA
1 TATATTATAAAAGATTA-TAA
19140732 TATATTATGAAAAGATTATAA
1 TATATTAT-AAAAGATTATAA
*
19140753 -AAATTATAAAA
1 TATATTATAAAA
19140764 AAGAATAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 6 0.21
21 11 0.38
22 8 0.28
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.40
Consensus pattern (20 bp):
TATATTATAAAAGATTATAA
Found at i:19140877 original size:19 final size:19
Alignment explanation
Indices: 19140828--19140899 Score: 60
Period size: 19 Copynumber: 3.7 Consensus size: 19
19140818 AAGGACTATA
19140828 AAAACATTAT-AAAATT-TT
1 AAAA-ATTATAAAAATTATT
*
19140846 TAAAATTAAATAAAAATTATT
1 AAAAATT--ATAAAAATTATT
*
19140867 AAAAATTATAAAAGTTA-T
1 AAAAATTATAAAAATTATT
19140885 ATAAAATTATTAAAA
1 A-AAAATTA-TAAAA
19140900 CTAGGATTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
17 3 0.07
18 5 0.11
19 18 0.40
20 11 0.24
21 8 0.18
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.36
Consensus pattern (19 bp):
AAAAATTATAAAAATTATT
Found at i:19140887 original size:11 final size:10
Alignment explanation
Indices: 19140835--19140899 Score: 57
Period size: 9 Copynumber: 6.7 Consensus size: 10
19140825 ATAAAAACAT
19140835 TATAAAATT-
1 TATAAAATTA
*
19140844 TTTAAAATTA
1 TATAAAATTA
*
19140854 AATAAAAATTA
1 TAT-AAAATTA
19140865 T-TAAAAATTA
1 TAT-AAAATTA
*
19140875 TA-AAAGTTA
1 TATAAAATTA
19140884 TATAAAATTA
1 TATAAAATTA
19140894 T-TAAAA
1 TATAAAA
19140900 CTAGGATTAA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
9 21 0.46
10 18 0.39
11 7 0.15
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (10 bp):
TATAAAATTA
Found at i:19141765 original size:12 final size:12
Alignment explanation
Indices: 19141750--19141779 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
19141740 ATTTTGGTAA
19141750 TTTTTTTC-AAT
1 TTTTTTTCTAAT
19141761 TTTTTTTCTAAT
1 TTTTTTTCTAAT
19141773 TTTTTTT
1 TTTTTTT
19141780 ATATTAATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 8 0.44
12 10 0.56
ACGTcount: A:0.13, C:0.07, G:0.00, T:0.80
Consensus pattern (12 bp):
TTTTTTTCTAAT
Found at i:19142231 original size:27 final size:27
Alignment explanation
Indices: 19142193--19142253 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
19142183 CCAACATCGT
* * *
19142193 CCGATTTAATATCCACCACTTCAGTTC
1 CCGATCTAATATCCACCACATCAGATC
19142220 CCGATCTAATATCCACCACATCAGATC
1 CCGATCTAATATCCACCACATCAGATC
19142247 CCGATCT
1 CCGATCT
19142254 TACACCCTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.28, C:0.36, G:0.08, T:0.28
Consensus pattern (27 bp):
CCGATCTAATATCCACCACATCAGATC
Found at i:19148768 original size:16 final size:14
Alignment explanation
Indices: 19148735--19148768 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 14
19148725 AGTTTCAATG
19148735 AAATATTTTTTTTA
1 AAATATTTTTTTTA
19148749 AAATATATTTTTTTA
1 AAATAT-TTTTTTTA
19148764 TAAAT
1 -AAAT
19148769 TTAAAGAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.33
15 8 0.44
16 4 0.22
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
AAATATTTTTTTTA
Found at i:19150164 original size:6 final size:6
Alignment explanation
Indices: 19150153--19150198 Score: 83
Period size: 6 Copynumber: 7.7 Consensus size: 6
19150143 TAAACAAAAC
*
19150153 AGAGGA AGAGGA AGAGGA AGAGGA AGAGGA AGAGGC AGAGGA AGAG
1 AGAGGA AGAGGA AGAGGA AGAGGA AGAGGA AGAGGA AGAGGA AGAG
19150199 ATGATGAGAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.48, C:0.02, G:0.50, T:0.00
Consensus pattern (6 bp):
AGAGGA
Found at i:19152177 original size:4 final size:4
Alignment explanation
Indices: 19152168--19152193 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
19152158 CTACCAATTG
19152168 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
19152194 ACTTCTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:19152303 original size:14 final size:13
Alignment explanation
Indices: 19152284--19152321 Score: 60
Period size: 14 Copynumber: 2.9 Consensus size: 13
19152274 AATTTTTTTG
19152284 TGTTCTTTTATTC
1 TGTTCTTTTATTC
19152297 TTGTTCTTTTATTC
1 -TGTTCTTTTATTC
19152311 T-TTCTTTTATT
1 TGTTCTTTTATT
19152322 ATTTTTGGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 10 0.42
13 1 0.04
14 13 0.54
ACGTcount: A:0.08, C:0.13, G:0.05, T:0.74
Consensus pattern (13 bp):
TGTTCTTTTATTC
Found at i:19152453 original size:23 final size:23
Alignment explanation
Indices: 19152410--19152454 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
19152400 ATTTATTTTT
* *
19152410 TATTATTATGATATGATTATTAA
1 TATTATTATAATATGAGTATTAA
19152433 TATTATTATAATTAT-AGTATTA
1 TATTATTATAA-TATGAGTATTA
19152455 CAGTATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (23 bp):
TATTATTATAATATGAGTATTAA
Found at i:19153305 original size:50 final size:49
Alignment explanation
Indices: 19153263--19153364 Score: 186
Period size: 50 Copynumber: 2.0 Consensus size: 49
19153253 ATTTGTTATA
19153263 TTATGTGTCAGTATATGTGTAAGATTGTCTTTCTTTTTCTATTAGACTTT
1 TTATGTGTCAGTATATGTGTAAGATTGTCTTTCTTTTTCTATTAGA-TTT
19153313 TTATGTGTCAGTATATGTGTAAGATTGTCTTTCTTTTTCTATTAGACTTT
1 TTATGTGTCAGTATATGTGTAAGATTGTCTTTCTTTTTCTATTAGA-TTT
19153363 TT
1 TT
19153365 TTATAACAAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.20, C:0.10, G:0.16, T:0.55
Consensus pattern (49 bp):
TTATGTGTCAGTATATGTGTAAGATTGTCTTTCTTTTTCTATTAGATTT
Found at i:19153532 original size:20 final size:20
Alignment explanation
Indices: 19153507--19153544 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
19153497 GTTTTTAATT
*
19153507 TTTAAAAATTAAGTGTAACC
1 TTTAAAAATTAAGAGTAACC
19153527 TTTAAAAATTAAGAGTAA
1 TTTAAAAATTAAGAGTAA
19153545 GCGATCTCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.05, G:0.11, T:0.34
Consensus pattern (20 bp):
TTTAAAAATTAAGAGTAACC
Found at i:19156990 original size:27 final size:28
Alignment explanation
Indices: 19156960--19157012 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
19156950 TAAAATAAGG
*
19156960 AAAAATAAA-CTAAATGGCAATACCCAA
1 AAAAAAAAACCTAAATGGCAATACCCAA
19156987 AAAAAAAAACCTAAATGGCAATACCC
1 AAAAAAAAACCTAAATGGCAATACCC
19157013 TTTTCTACTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 8 0.33
28 16 0.67
ACGTcount: A:0.58, C:0.21, G:0.08, T:0.13
Consensus pattern (28 bp):
AAAAAAAAACCTAAATGGCAATACCCAA
Found at i:19166912 original size:5 final size:5
Alignment explanation
Indices: 19166902--19166927 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
19166892 CTCAAAAAGT
19166902 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
19166928 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:19175641 original size:15 final size:15
Alignment explanation
Indices: 19175621--19175650 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
19175611 CAATTTAAAA
19175621 TATAAATTTATTAAT
1 TATAAATTTATTAAT
19175636 TATAAATTTATTAAT
1 TATAAATTTATTAAT
19175651 ATATGTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TATAAATTTATTAAT
Found at i:19175691 original size:22 final size:22
Alignment explanation
Indices: 19175660--19175703 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
19175650 TATATGTAAA
*
19175660 AACAGTTTTTGCGGAAAATATT
1 AACAGCTTTTGCGGAAAATATT
19175682 AACAGCTTTTGCGGAAAATATT
1 AACAGCTTTTGCGGAAAATATT
19175704 TTTAGGAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.34
Consensus pattern (22 bp):
AACAGCTTTTGCGGAAAATATT
Found at i:19175801 original size:20 final size:19
Alignment explanation
Indices: 19175761--19175803 Score: 68
Period size: 19 Copynumber: 2.2 Consensus size: 19
19175751 TAAACACCGA
*
19175761 AAAAGTAAATCATTTTTAG
1 AAAAGTAAATCATTTTCAG
19175780 AAAAGTAAATCATTTTCCAG
1 AAAAGTAAATCATTTT-CAG
19175800 AAAA
1 AAAA
19175804 CATTTTACTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.30
Consensus pattern (19 bp):
AAAAGTAAATCATTTTCAG
Found at i:19178954 original size:32 final size:32
Alignment explanation
Indices: 19178882--19178958 Score: 95
Period size: 32 Copynumber: 2.4 Consensus size: 32
19178872 AGGAATATTG
* *
19178882 TTATCATTTAACAAAATTGAAGTTGTAATTTG
1 TTATCATTTCACAAAATTGAAGTTGTAATTTA
*
19178914 TTACCATTTCACAAAA-TGAAAGTTG-ATATTTA
1 TTATCATTTCACAAAATTG-AAGTTGTA-ATTTA
19178946 TTATCATTTCACA
1 TTATCATTTCACA
19178959 GAACCACGCG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
31 3 0.08
32 36 0.92
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.42
Consensus pattern (32 bp):
TTATCATTTCACAAAATTGAAGTTGTAATTTA
Found at i:19179800 original size:20 final size:20
Alignment explanation
Indices: 19179767--19179812 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
19179757 TAAAAATTCC
19179767 AAAATAATTCAAAATAATTT-T
1 AAAA-AATTCAAAAT-ATTTAT
*
19179788 AAAAAATTTAAAATATTTAT
1 AAAAAATTCAAAATATTTAT
19179808 AAAAA
1 AAAAA
19179813 TCCCAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 4 0.17
20 15 0.65
21 4 0.17
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (20 bp):
AAAAAATTCAAAATATTTAT
Found at i:19191160 original size:12 final size:13
Alignment explanation
Indices: 19191145--19191174 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
19191135 TAGTTCAAGG
19191145 ATCAGTTC-TTAT
1 ATCAGTTCTTTAT
19191157 ATCAGTTCTTTAT
1 ATCAGTTCTTTAT
19191170 ATCAG
1 ATCAG
19191175 ACTGATATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.47
13 9 0.53
ACGTcount: A:0.27, C:0.17, G:0.10, T:0.47
Consensus pattern (13 bp):
ATCAGTTCTTTAT
Found at i:19198029 original size:26 final size:25
Alignment explanation
Indices: 19198000--19198048 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
19197990 CTTTTATATA
* *
19198000 TTTATTTTTTATAAATTTTTAATTCT
1 TTTATATTTAATAAA-TTTTAATTCT
*
19198026 TTTATATTTAATATATTTTAATT
1 TTTATATTTAATAAATTTTAATT
19198049 ATATAGATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 8 0.40
26 12 0.60
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (25 bp):
TTTATATTTAATAAATTTTAATTCT
Found at i:19198034 original size:17 final size:17
Alignment explanation
Indices: 19197981--19198034 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
19197971 TGGTTTAGGT
*
19197981 TTTTTAGTTCTTTTATA
1 TTTTTAATTCTTTTATA
*
19197998 TATTT-ATT-TTTTATAAA
1 TTTTTAATTCTTTTAT--A
19198015 TTTTTAATTCTTTTATA
1 TTTTTAATTCTTTTATA
19198032 TTT
1 TTT
19198035 AATATATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 6 0.20
16 2 0.07
17 13 0.43
18 3 0.10
19 6 0.20
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.70
Consensus pattern (17 bp):
TTTTTAATTCTTTTATA
Found at i:19200768 original size:64 final size:66
Alignment explanation
Indices: 19200640--19200768 Score: 172
Period size: 64 Copynumber: 2.0 Consensus size: 66
19200630 TATAACATAA
* * *** *
19200640 CAATTTATGATATTATTTTTGTTAATATATGTTTAATGGTCGAAAATTTTTATGTCAAAAAAATA
1 CAATTTATGATATTATTTGTGTTAATATATATTTAACAATCGAAAATTTTTATATCAAAAAAATA
19200705 T
66 T
* *
19200706 CAATTTATGATATTA-TTGTGTTAATATATATTTAACAATTG-AAATTTTTATATCAAAGAAATA
1 CAATTTATGATATTATTTGTGTTAATATATATTTAACAATCGAAAATTTTTATATCAAAAAAATA
19200769 GTTTGACATT
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
64 20 0.36
65 20 0.36
66 15 0.27
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.46
Consensus pattern (66 bp):
CAATTTATGATATTATTTGTGTTAATATATATTTAACAATCGAAAATTTTTATATCAAAAAAATA
T
Found at i:19201089 original size:11 final size:12
Alignment explanation
Indices: 19201060--19201090 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
19201050 AAGTTATTAA
19201060 AAAATTATGAAG
1 AAAATTATGAAG
19201072 AAAATTATGAAG
1 AAAATTATGAAG
19201084 -AAATTAT
1 AAAATTAT
19201091 AATTCTTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 7 0.37
12 12 0.63
ACGTcount: A:0.58, C:0.00, G:0.13, T:0.29
Consensus pattern (12 bp):
AAAATTATGAAG
Found at i:19207730 original size:19 final size:18
Alignment explanation
Indices: 19207692--19207750 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 18
19207682 CTACATATTT
*
19207692 TTTTAAAAAAATTTAT-AA
1 TTTTAAAAATATTT-TGAA
19207710 TTTATAAAAATATTTTGAA
1 TTT-TAAAAATATTTTGAA
*
19207729 TTTTGAAAATTATTTTG-A
1 TTTT-AAAAATATTTTGAA
19207747 TTTT
1 TTTT
19207751 TTTTGTAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
18 10 0.28
19 26 0.72
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (18 bp):
TTTTAAAAATATTTTGAA
Found at i:19209227 original size:3 final size:3
Alignment explanation
Indices: 19209214--19209266 Score: 63
Period size: 3 Copynumber: 17.3 Consensus size: 3
19209204 TTATCATCTT
* *
19209214 TTA TTA TTTA TTA TTA CTA CTA TTA TTA TTA TTA TTA TTA CTTA -TA
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
19209260 TTA TTA T
1 TTA TTA T
19209267 ATAACAGCTT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
2 2 0.04
3 37 0.82
4 6 0.13
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:19222139 original size:41 final size:41
Alignment explanation
Indices: 19222078--19222283 Score: 153
Period size: 41 Copynumber: 4.9 Consensus size: 41
19222068 AAATAAAGGA
* *
19222078 TCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGTATCAAG
1 TCTTATCTCCCTGAGA-TTACAGTAGAGTAGATCGAATCAAG
** * * * *
19222119 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAA
1 TCTTATCTCCCTGAGATTACAGTAGAGTAGATCGAATC-A--AG
* * ** * *
19222163 TCCTATCTCCCTGAGATTACAGTAGAGTGGATTAAAATTTAGG
1 TCTTATCTCCCTGAGATTACAGTAGAGTAGA-TCGAA-TCAAG
* * * *
19222206 ATCTTATCTCTCTGAGGTTACAGTAGAGTAGATCGCATCAGG
1 -TCTTATCTCCCTGAGATTACAGTAGAGTAGATCGAATCAAG
* * *
19222248 TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAA
1 TCTTATCTCCCTGAGATTACAGTAGAGTAGATCGAA
19222284 GAATTTCAGA
Statistics
Matches: 127, Mismatches: 31, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
41 61 0.48
42 6 0.05
43 2 0.02
44 54 0.43
45 4 0.03
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (41 bp):
TCTTATCTCCCTGAGATTACAGTAGAGTAGATCGAATCAAG
Found at i:19222196 original size:129 final size:128
Alignment explanation
Indices: 19221945--19222274 Score: 421
Period size: 129 Copynumber: 2.5 Consensus size: 128
19221935 AAAAATTTTA
* * * * * * *
19221945 GATCTTATCTCCCTGAAGTTACAGTGGAGCATATTGAAGCCAGAGATCTTATCGCCCTGAGATTA
1 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGAA-TCA-AG-TCTTATCTCCCTGAGATTA
19222010 CAGCGGAGCAGATCAAAGATACTATCCTATCTCCCTGAAGTTACAGTGAAGTGGATTAAAATAAA
63 CAGCGGAGCAGATCAAAGATACTATCCTATCTCCCTGAAGTTACAGTGAAGTGGATTAAAATAAA
19222075 G
128 G
*
19222076 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAAGTCTTATCTCCCTGAGATTACAG
1 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGAATCAAGTCTTATCTCCCTGAGATTACAG
** * * **
19222141 CGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTG-AGATTACAGT-AGAGTGGATTAAAATTTA
66 CGGAGCAGATCAAAGATACT-ATCCTATCTCCCTGAAG-TTACAGTGA-AGTGGATTAAAATAAA
19222204 G
128 G
* * * *
19222205 GATCTTATCTCTCTGAGGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAG
1 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGAATCAAGTCTTATCTCCCTGAGATTACAG
*
19222270 TGGAG
66 CGGAG
19222275 TAGACCGAAG
Statistics
Matches: 177, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
128 40 0.23
129 103 0.58
130 2 0.01
131 32 0.18
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (128 bp):
GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGAATCAAGTCTTATCTCCCTGAGATTACAG
CGGAGCAGATCAAAGATACTATCCTATCTCCCTGAAGTTACAGTGAAGTGGATTAAAATAAAG
Found at i:19222321 original size:175 final size:176
Alignment explanation
Indices: 19222122--19222600 Score: 574
Period size: 175 Copynumber: 2.7 Consensus size: 176
19222112 TATCAAGTCT
* * *
19222122 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTA
1 TATCTCTCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTG
** *
19222187 GAGTGGATTAAAATTTAGGATCTTATCTCTCTGAGGTTACAGTAGAGTAGATCGCATC-AG-G-T
66 GAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAAGCGAT
* * * * *
19222249 CTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCA-GATCT
131 CCTATCTCCCTGAAGTTACAGTAGAGCAGA-CGAA-AATTT-AGGATCC
* *
19222297 TATCTCTTTAAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACAGTG
1 TATCTCTCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTG
* *
19222362 GAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGATTGA
66 GAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC------A
* **
19222427 AGCCGATAATCCTATCTCCCTGAAGTTACAGTAGAGCGGATTAAAATTTAGGATCC
125 AG-CG---ATCCTATCTCCCTGAAGTTACAGTAGAGCAGACGAAAATTTAGGATCC
* * * * **
19222483 TATCTCTCTGAGATTACAGCAGAGCAGATTGAAGAC-ACT-ATCCTATCCCCCTGAGATTTTAGT
1 TATCTCTCTAAGATTACAGCGGAGCAGATTGAAG-CTAGTAATCCTATCTCCCTGAGATTACAGT
19222546 GGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
65 GGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
19222601 TGTCAGATAT
Statistics
Matches: 261, Mismatches: 28, Indels: 20
0.84 0.09 0.06
Matches are distributed among these distances:
175 113 0.43
182 2 0.01
184 1 0.00
185 75 0.29
186 42 0.16
187 2 0.01
188 26 0.10
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (176 bp):
TATCTCTCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTG
GAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAAGCGAT
CCTATCTCCCTGAAGTTACAGTAGAGCAGACGAAAATTTAGGATCC
Found at i:19222389 original size:44 final size:43
Alignment explanation
Indices: 19221945--19222598 Score: 215
Period size: 44 Copynumber: 14.8 Consensus size: 43
19221935 AAAAATTTTA
* * ***
19221945 GATCTTATCTCCCTGA-AGTTACAGTGGAGCATATTGAAGCCAG
1 GATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATAAG
* * * *
19221988 AGATCTTATCGCCCTGAGATTACAGCGGAGCAGATCAAAGAT-AC
1 -GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAA-ATAAG
* * * **
19222032 TATCCTATCTCCCTGA-AGTTACAGTGAAGTGGATTAAAATAAAG
1 GATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAAT-AAG
* * * ***
19222076 GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGA-TCGTATCAA-
1 GATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAAT-AAG
* **
19222118 G-TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCT-AG
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-AAAATAAG
* * * ** *
19222160 TAATCCTATCTCCCTGAGATTACAGTAGAGTGGATTAAAATTTAG
1 -GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAA-TAAG
* * * * *** *
19222205 GATCTTATCTCTCTGAGGTTACAGTAGAGTAGA-TCGCATCAG
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAG
* * ** *
19222247 G-TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCA-
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGA-TTAA-AA--TAAG
** * * *
19222292 GATCTTATCTCTTTAAGATTACAGCGGAGCAGATTGAAGAT-AG
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-AAAATAAG
* * *
19222335 TAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAG
1 -GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT-AAG
* * * *
19222380 GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCACATCAGATTGAAG
1 GATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTA-A--A-A-T-AAG
* * * *
19222429 CCGATAATCCTATCTCCCTGA-AGTTACAGTAGAGCGGATTAAAATTTAG
1 --G---ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAA-TAAG
* * ** * * *
19222478 GATCCTATCTCTCTGAGATTACAGCAGAGCAGATTGAAGA-CAC
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-AAAATAAG
* * * ** **
19222521 TATCCTATCCCCCTGAGATTTTAGTGGAGTGGATTAAAATAAAG
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT-AAG
* * *
19222565 GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGAT
1 GATCTTATCTCCCTGAGA-TTACAGTGGAGCAGAT
19222599 CGTGTCAGAT
Statistics
Matches: 455, Mismatches: 115, Indels: 80
0.70 0.18 0.12
Matches are distributed among these distances:
41 55 0.12
42 14 0.03
43 72 0.16
44 227 0.50
45 12 0.03
46 30 0.07
47 2 0.00
48 1 0.00
49 6 0.01
50 3 0.01
51 2 0.00
53 1 0.00
54 30 0.07
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (43 bp):
GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAG
Found at i:19222490 original size:98 final size:98
Alignment explanation
Indices: 19222335--19222511 Score: 268
Period size: 98 Copynumber: 1.8 Consensus size: 98
19222325 TTGAAGATAG
* *
19222335 TAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGA-AGT
1 TAATCCTATCTCCCTGAGATTACAGTAGAGCGGATTAAAATAAAGGATCCTATCTCTCTGAGA-T
* *
19222399 TACAGTAGAGTAGATCACATCAGATTGAAGCCGA
65 TACAGCAGAGCAGATCACATCAGATTGAAGCCGA
**
19222433 TAATCCTATCTCCCTGA-AGTTACAGTAGAGCGGATTAAAATTTAGGATCCTATCTCTCTGAGAT
1 TAATCCTATCTCCCTGAGA-TTACAGTAGAGCGGATTAAAATAAAGGATCCTATCTCTCTGAGAT
19222497 TACAGCAGAGCAGAT
65 TACAGCAGAGCAGAT
19222512 TGAAGACACT
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
97 1 0.01
98 69 0.97
99 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (98 bp):
TAATCCTATCTCCCTGAGATTACAGTAGAGCGGATTAAAATAAAGGATCCTATCTCTCTGAGATT
ACAGCAGAGCAGATCACATCAGATTGAAGCCGA
Found at i:19222661 original size:44 final size:44
Alignment explanation
Indices: 19222604--19223147 Score: 504
Period size: 44 Copynumber: 12.7 Consensus size: 44
19222594 TAGATCGTGT
* *
19222604 CAGATATTCTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGA
* * *
19222648 CAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGA
* * ** *
19222692 C-GAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAG-CCA
1 CAG-ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGA
* * * * *
19222735 CCAG-TCCTATCTCCCTAAGAAGTAGTGGAGCAGGTCAAAGATGGA
1 -CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-CGA
* * *
19222780 -AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-CGA
19222824 -AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGA
*
19222867 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-ATA-TC-A
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGA-AGACGA
*
19222909 -AG-TTTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGA
*
19222951 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-ACA-TC-A
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGA-AGACGA
* * * *
19222993 -AG-TTTTATCCCCCTAAGTAGTAGTGGAGCAGA-GGAAAGAC-A
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG-AAGACGA
* ** * * * * * *
19223034 CCA-ATCCTATCTCCCTGAAGTGGCAGCGGAGCGGAT-TAAAACCA
1 -CAGATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATCGAAGACGA
* *
19223078 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCA-TC-A
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGA
* *
19223120 -AG-TCTTATCTACCTAAGCAGTAGAGGAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAG
19223148 TAGACAGAAG
Statistics
Matches: 418, Mismatches: 57, Indels: 54
0.79 0.11 0.10
Matches are distributed among these distances:
40 84 0.20
41 11 0.03
42 4 0.01
43 71 0.17
44 246 0.59
45 2 0.00
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.23
Consensus pattern (44 bp):
CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGA
Found at i:19222683 original size:84 final size:82
Alignment explanation
Indices: 19222604--19223147 Score: 438
Period size: 84 Copynumber: 6.4 Consensus size: 82
19222594 TAGATCGTGT
* * *
19222604 CAGATATTCTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAGATCTTATCTCCCTAAGTA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-AAGAC-A-AG-TCTTATCTCCCTAAGCA
*
19222669 GTAGTGGAGCAGATCGAAGATGG
62 GTAGTGGAGCAGATC--AGATGA
* * * * * *
19222692 C-GAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTAAGAA
1 CAG-ATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-TCAAG--ACAAGTCTTATCTCCCTAAGCA
*
19222756 GTAGTGGAGCAGGTCAAAGATGGA
62 GTAGTGGAGCAGATC--AGAT-GA
* *
19222780 -AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGAAGATCTTATCTCCCTAAGCA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-AAGA--CAAG-TCTTATCTCCCTAAGCA
*
19222844 GTAGTGGAGCAGATCGAAGACGA
62 GTAGTGGAGCAGATC--AGATGA
* *
19222867 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCATA-TCAAGTTTTATCTCCCTAAGCAGTA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCA-AGACAAGTCTTATCTCCCTAAGCAGTA
*
19222931 GTGGAGCAGATCGAAGACGA
65 GTGGAGCAGATC--AGATGA
* * * *
19222951 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACA-TCAAGTTTTATCCCCCTAAGTAGTA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCA-AGACAAGTCTTATCTCCCTAAGCAGTA
** *
19223015 GTGGAGCAGAGGA-AAGA
65 GTGGAGCAGATCAGATGA
* * ** * * * * *
19223032 CACCAATCCTATCTCCCTGAAGTGGCAGCGGAGCGGATTAAAACCACAGATCTTATCTCCCTAAG
1 CA--GATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATCAAGA-CA-AG-TCTTATCTCCCTAAG
*
19223097 CAGTAGTGGAGCAGATC-GCATCA
60 CAGTAGTGGAGCAGATCAG-ATGA
* *
19223120 -AG-TCTTATCTACCTAAGCAGTAGAGGAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAG
19223148 TAGACAGAAG
Statistics
Matches: 380, Mismatches: 55, Indels: 47
0.79 0.11 0.10
Matches are distributed among these distances:
81 5 0.01
82 1 0.00
83 23 0.06
84 135 0.36
85 6 0.02
86 3 0.01
87 99 0.26
88 105 0.28
89 1 0.00
90 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.23
Consensus pattern (82 bp):
CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAGACAAGTCTTATCTCCCTAAGCAGTAG
TGGAGCAGATCAGATGA
Found at i:19222759 original size:131 final size:130
Alignment explanation
Indices: 19222613--19223114 Score: 490
Period size: 131 Copynumber: 3.9 Consensus size: 130
19222603 TCAGATATTC
*
19222613 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAGATCTTATCTCCCTAAGTAGTAGTGGAG
1 TCTCCCTAAGCAGTAGTGGAGCAGATC-AAGACGA-AGATCTTATCTCCCTAAGCAGTAGTGGAG
* * **
19222678 CAGATCGAAGATGGC-GAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAG-CCACCAG-T
64 CAGATCGAAGATGGCAG-ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCA-CAGAT
19222740 CCTA
127 CCTA
* * *
19222744 TCTCCCTAAGAAGTAGTGGAGCAGGTCAAAGATGGAAGATCTTATCTCCCTAAGCAGTAGTGGAG
1 TCTCCCTAAGCAGTAGTGGAGCAGATC-AAGA-CGAAGATCTTATCTCCCTAAGCAGTAGTGGAG
* * * * *
19222809 CAGGTCAAAGATGGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAGATCT
64 CAGATCGAAGATGGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCACAGATCC
19222874 TA
129 TA
* *
19222876 TCTCCCTAAGCAGTAGTGGAGCAGATCATA-TC-AAG-TTTTATCTCCCTAAGCAGTAGTGGAGC
1 TCTCCCTAAGCAGTAGTGGAGCAGATCA-AGACGAAGATCTTATCTCCCTAAGCAGTAGTGGAGC
* * * * **
19222938 AGATCGAAGACGACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC--ACATCA-AG-TTTT
65 AGATCGAAGATGGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCACAGATCCT
19222999 A
130 A
* * ** * ** * *
19223000 TCCCCCTAAGTAGTAGTGGAGCAGAGGAAAGAC-ACCA-ATCCTATCTCCCTGAAGTGGCAGCGG
1 TCTCCCTAAGCAGTAGTGGAGCAGA-TCAAGACGA--AGATCTTATCTCCCT-AAGCAGTAGTGG
* * * ***
19223063 AGCGGAT-TAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
62 AGCAGATCGAAGATGGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
19223115 CATCAAGTCT
Statistics
Matches: 316, Mismatches: 43, Indels: 27
0.82 0.11 0.07
Matches are distributed among these distances:
124 28 0.09
125 5 0.02
126 3 0.01
127 52 0.16
128 84 0.27
129 3 0.01
131 106 0.34
132 35 0.11
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.23
Consensus pattern (130 bp):
TCTCCCTAAGCAGTAGTGGAGCAGATCAAGACGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
GATCGAAGATGGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCACAGATCCTA
Found at i:19224529 original size:12 final size:11
Alignment explanation
Indices: 19224505--19224543 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
19224495 TTATCATCTT
19224505 TTATTA-TTTA
1 TTATTACTTTA
19224515 TTATTACTATTA
1 TTATTACT-TTA
19224527 TTATTACTTATA
1 TTATTACTT-TA
19224539 TTATT
1 TTATT
19224544 GCTACTTATC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 6 0.23
11 2 0.08
12 18 0.69
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (11 bp):
TTATTACTTTA
Found at i:19224532 original size:15 final size:15
Alignment explanation
Indices: 19224506--19224543 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
19224496 TATCATCTTT
19224506 TATTATTTATTA-TTA
1 TATTA-TTATTACTTA
19224521 CTATTATTATTACTTA
1 -TATTATTATTACTTA
19224537 TATTATT
1 TATTATT
19224544 GCTACTTATC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (15 bp):
TATTATTATTACTTA
Found at i:19226800 original size:18 final size:16
Alignment explanation
Indices: 19226760--19226813 Score: 63
Period size: 18 Copynumber: 3.2 Consensus size: 16
19226750 ATTTTTTTAA
*
19226760 AAATATTATATAAATAT
1 AAATATTAAATAAA-AT
19226777 AAATATTAAATAAAAT
1 AAATATTAAATAAAAT
*
19226793 AATTATATTAAAAAAAAT
1 AA--ATATTAAATAAAAT
19226811 AAA
1 AAA
19226814 ACTTTCCCCA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
16 5 0.15
17 13 0.39
18 15 0.45
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AAATATTAAATAAAAT
Found at i:19226959 original size:13 final size:13
Alignment explanation
Indices: 19226932--19226965 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
19226922 CAACGGTGGA
*
19226932 GGAGA-GGAGAGG
1 GGAGAGGGAGACG
19226944 GGAGAGGGAGACG
1 GGAGAGGGAGACG
19226957 GGAGAGGGA
1 GGAGAGGGA
19226966 TGGGTTGGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 5 0.25
13 15 0.75
ACGTcount: A:0.32, C:0.03, G:0.65, T:0.00
Consensus pattern (13 bp):
GGAGAGGGAGACG
Found at i:19229262 original size:15 final size:15
Alignment explanation
Indices: 19229242--19229302 Score: 61
Period size: 15 Copynumber: 3.9 Consensus size: 15
19229232 TGATTTGTTC
19229242 AAATGAAGAAGAACA
1 AAATGAAGAAGAACA
19229257 AAATGAAGAAGAATTTTC-
1 AAATGAAGAAGAA----CA
*
19229275 AAGTGAAGAAGAACA
1 AAATGAAGAAGAACA
*
19229290 ACATGAAGAAGAA
1 AAATGAAGAAGAA
19229303 ATTTCAAAGG
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
14 1 0.03
15 24 0.63
18 12 0.32
19 1 0.03
ACGTcount: A:0.59, C:0.07, G:0.21, T:0.13
Consensus pattern (15 bp):
AAATGAAGAAGAACA
Found at i:19229276 original size:33 final size:33
Alignment explanation
Indices: 19229239--19229310 Score: 117
Period size: 33 Copynumber: 2.2 Consensus size: 33
19229229 ACATGATTTG
*
19229239 TTCAAATGAAGAAGAACAAAATGAAGAAGAATT
1 TTCAAATGAAGAAGAACAAAATGAAGAAGAAAT
* *
19229272 TTCAAGTGAAGAAGAACAACATGAAGAAGAAAT
1 TTCAAATGAAGAAGAACAAAATGAAGAAGAAAT
19229305 TTCAAA
1 TTCAAA
19229311 GGAGGATGTG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.56, C:0.08, G:0.18, T:0.18
Consensus pattern (33 bp):
TTCAAATGAAGAAGAACAAAATGAAGAAGAAAT
Found at i:19229445 original size:21 final size:21
Alignment explanation
Indices: 19229419--19229484 Score: 96
Period size: 21 Copynumber: 3.1 Consensus size: 21
19229409 ATTAGAAGGG
* *
19229419 GAAATGAAGGAAGGAAAAGCT
1 GAAATGAAGGAACGAAAAGCA
19229440 GAAATGAAGGAACGAAAAGCA
1 GAAATGAAGGAACGAAAAGCA
* *
19229461 AAAATGAAGGAACTAAAAGCA
1 GAAATGAAGGAACGAAAAGCA
19229482 GAA
1 GAA
19229485 TTTGAGAAGG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.58, C:0.08, G:0.27, T:0.08
Consensus pattern (21 bp):
GAAATGAAGGAACGAAAAGCA
Found at i:19230258 original size:24 final size:24
Alignment explanation
Indices: 19230213--19230259 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
19230203 TCCATTCGAC
* **
19230213 GACGGACAAATAGGATTGGATGAT
1 GACGAACAAATAGGATCAGATGAT
19230237 GACGAACAAATAGGATCAGATGA
1 GACGAACAAATAGGATCAGATGA
19230260 CGGTCAATTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.43, C:0.11, G:0.30, T:0.17
Consensus pattern (24 bp):
GACGAACAAATAGGATCAGATGAT
Found at i:19232010 original size:40 final size:39
Alignment explanation
Indices: 19231943--19232018 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 39
19231933 TAATTCATTA
19231943 ATTTTTTAAAAATTAAAAAATTCAAAAAATATATAAAAATT
1 ATTTTTTAAAAATTAAAAAATTCAAAAAA-ATA-AAAAATT
*
19231984 ATTTTTT-AAAATTAAAAAGTAT-AAAAAAATAAAAA
1 ATTTTTTAAAAATTAAAAAAT-TCAAAAAAATAAAAA
19232019 TATACATGTG
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
38 4 0.12
39 3 0.09
40 18 0.55
41 8 0.24
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (39 bp):
ATTTTTTAAAAATTAAAAAATTCAAAAAAATAAAAAATT
Found at i:19233057 original size:20 final size:21
Alignment explanation
Indices: 19233020--19233060 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
19233010 ATATGGTGCT
**
19233020 AATATGCATAATGGAATAATA
1 AATATGCATAATAAAATAATA
19233041 AATATG-ATAATAAAATAATA
1 AATATGCATAATAAAATAATA
19233061 CGAGTAATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.59, C:0.02, G:0.10, T:0.29
Consensus pattern (21 bp):
AATATGCATAATAAAATAATA
Found at i:19233276 original size:24 final size:24
Alignment explanation
Indices: 19233249--19233297 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
19233239 ATATATAAAA
19233249 ATTATAAGATATATATATTTAAGT
1 ATTATAAGATATATATATTTAAGT
19233273 ATTATAAGATATATATATTTAAGT
1 ATTATAAGATATATATATTTAAGT
19233297 A
1 A
19233298 CGCATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.45
Consensus pattern (24 bp):
ATTATAAGATATATATATTTAAGT
Found at i:19233308 original size:24 final size:24
Alignment explanation
Indices: 19233252--19233303 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 24
19233242 TATAAAAATT
**
19233252 ATAAGATATATATATTTAAGTATT
1 ATAAGATATATATATTTAAGTAGC
19233276 ATAAGATATATATATTTAAGTACGC
1 ATAAGATATATATATTTAAGTA-GC
19233301 ATA
1 ATA
19233304 TATATTTATG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 22 0.88
25 3 0.12
ACGTcount: A:0.46, C:0.04, G:0.10, T:0.40
Consensus pattern (24 bp):
ATAAGATATATATATTTAAGTAGC
Found at i:19233517 original size:16 final size:16
Alignment explanation
Indices: 19233492--19233523 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
19233482 TTGGTTCGCT
*
19233492 GTAATGGAATAGAGGC
1 GTAATAGAATAGAGGC
19233508 GTAATAGAATAGAGGC
1 GTAATAGAATAGAGGC
19233524 ATGTATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.06, G:0.34, T:0.19
Consensus pattern (16 bp):
GTAATAGAATAGAGGC
Found at i:19233843 original size:15 final size:16
Alignment explanation
Indices: 19233817--19233855 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
19233807 AAACGATTTA
*
19233817 ATATAGATAATAATAT
1 ATATAAATAATAATAT
19233833 ATA-AAATAATAATAT
1 ATATAAATAATAATAT
19233848 ATATAAAT
1 ATATAAAT
19233856 TTAAACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 14 0.67
16 7 0.33
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (16 bp):
ATATAAATAATAATAT
Found at i:19236319 original size:51 final size:50
Alignment explanation
Indices: 19236205--19236365 Score: 243
Period size: 51 Copynumber: 3.2 Consensus size: 50
19236195 CTTACGTATG
* *
19236205 ATCACTTATCACTTGTC-CTTGATCAGATAAGTGTAGCTAAGCTACCACTT
1 ATCACTTGTCACTTGTCAC-TGATCAGATAAGTGTAGCTAAGCTATCACTT
* * *
19236255 ATCGCTTGCCACTTCTCACTGATCAGATAAGTGTAGCTAAAGCTATCACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTATCACTT
19236306 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTATCACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTATCACTT
19236357 ATCACTTGT
1 ATCACTTGT
19236366 AATAGCCAGA
Statistics
Matches: 100, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
50 32 0.32
51 68 0.68
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.34
Consensus pattern (50 bp):
ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTATCACTT
Found at i:19238876 original size:46 final size:46
Alignment explanation
Indices: 19238794--19239070 Score: 374
Period size: 46 Copynumber: 6.0 Consensus size: 46
19238784 CATGGCAAAG
* * * * *
19238794 TGTGAAACGTAGGTATGGTGTTTCAGTGAAGTAAACCATACTGAAT
1 TGTGAAAAGTAGGTATGGTATTTCGGTGAAGAAAACCATACTGAGT
** * * *
19238840 TGCAAAAAGTAGGTATGGTATTTTGGTAAAGAAAACCATACTGAGC
1 TGTGAAAAGTAGGTATGGTATTTCGGTGAAGAAAACCATACTGAGT
* * *
19238886 TGTGAAAGGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTATTTCGGTGAAGAAAACCATACTGAGT
* *
19238932 TGCGAAAAGTAGGTATGGTATTTCGGTAAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTATTTCGGTGAAGAAAACCATACTGAGT
*
19238978 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTATTTCGGTGAAGAAAACCATACTGAGT
* * * *
19239024 TGTGAAAAGTATGTATGGTATTTCCGTGAAGATAACCATATTGAGT
1 TGTGAAAAGTAGGTATGGTATTTCGGTGAAGAAAACCATACTGAGT
19239070 T
1 T
19239071 ATAGCAATGT
Statistics
Matches: 200, Mismatches: 31, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 200 1.00
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (46 bp):
TGTGAAAAGTAGGTATGGTATTTCGGTGAAGAAAACCATACTGAGT
Found at i:19239069 original size:92 final size:92
Alignment explanation
Indices: 19238794--19239070 Score: 428
Period size: 92 Copynumber: 3.0 Consensus size: 92
19238784 CATGGCAAAG
* * * *
19238794 TGTGAAACGTAGGTATGGTGTTTCAGTGAAGTAAACCATACTGAATTGCAAAAAGTAGGTATGGT
1 TGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTGCGAAAAGTAGGTATGGT
* *
19238859 ATTTTGGTAAAGAAAACCATACTGAGC
66 ATTTCGGTAAAGAAAACCATACTGAGT
*
19238886 TGTGAAAGGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTGCGAAAAGTAGGTATGGT
1 TGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTGCGAAAAGTAGGTATGGT
19238951 ATTTCGGTAAAGAAAACCATACTGAGT
66 ATTTCGGTAAAGAAAACCATACTGAGT
* * *
19238978 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGTTGTGAAAAGTATGTATGGT
1 TGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTGCGAAAAGTAGGTATGGT
* * * *
19239043 ATTTCCGTGAAGATAACCATATTGAGT
66 ATTTCGGTAAAGAAAACCATACTGAGT
19239070 T
1 T
19239071 ATAGCAATGT
Statistics
Matches: 171, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 171 1.00
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (92 bp):
TGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTGCGAAAAGTAGGTATGGT
ATTTCGGTAAAGAAAACCATACTGAGT
Found at i:19239326 original size:51 final size:51
Alignment explanation
Indices: 19239250--19239428 Score: 288
Period size: 51 Copynumber: 3.5 Consensus size: 51
19239240 GGGGTGTTAC
*
19239250 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTATCACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACCACTT
*
19239301 ATCACTTGTCACTTGTCACTAATCAGATAAGTGTAGCTGAAGCTACCACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACCACTT
* * *
19239352 ATCACTTGTCACTTATCACTGATCAGATAAGTGTAACT-AGGCTACCACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACCACTT
* *
19239402 ATCACTTATCACTTGTTACTGATCAGA
1 ATCACTTGTCACTTGTCACTGATCAGA
19239429 AGTACTGAAA
Statistics
Matches: 119, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
50 35 0.29
51 84 0.71
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (51 bp):
ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACCACTT
Found at i:19243666 original size:28 final size:28
Alignment explanation
Indices: 19243602--19243666 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
19243592 CTAGTTTGGT
*
19243602 TCCATGCTCTCTTTTTCTCTTCGGTTCA
1 TCCATGCTCTCCTTTTCTCTTCGGTTCA
*
19243630 TCCAAGCTCTCCTTTTCTCTTCGGTTCA
1 TCCATGCTCTCCTTTTCTCTTCGGTTCA
*
19243658 TTCATGCTC
1 TCCATGCTC
19243667 GGCTTCCAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.09, C:0.34, G:0.11, T:0.46
Consensus pattern (28 bp):
TCCATGCTCTCCTTTTCTCTTCGGTTCA
Found at i:19255260 original size:33 final size:32
Alignment explanation
Indices: 19255216--19255474 Score: 151
Period size: 33 Copynumber: 7.7 Consensus size: 32
19255206 AAATGTGAAG
19255216 GGGGTTGCTAAGTGCTGATTCCCCGACTCATT
1 GGGGTTGCTAAGTGCTGATTCCCCGACTCATT
*
19255248 GGTGGTTGCTAAGTGCTGATTCCACCGTATCTTGAATAT
1 GG-GGTTGCTAAGTGCTGATTCC-CCG-A-C-T-CAT-T
* *
19255287 AAAGAAGGTTGCTAAGTGCTGATT-CCC-A--CA-A
1 ---G-GGGTTGCTAAGTGCTGATTCCCCGACTCATT
*
19255318 GGGGTTGCTAAGTGCTGATTCCCCGATTCATT
1 GGGGTTGCTAAGTGCTGATTCCCCGACTCATT
* *
19255350 GGTGGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGT
1 GG-GGTTGCTAAGTGCTGATTCC-CCG-A--CT-CAT-T
*
19255389 GAAGGGGGTTGCTAAGTGCTGATT-CCC--C-CA-A
1 ----GGGGTTGCTAAGTGCTGATTCCCCGACTCATT
* * *
19255420 GGGGTTGCTATGTGCTGATTTCCCGAATCATT
1 GGGGTTGCTAAGTGCTGATTCCCCGACTCATT
19255452 GGCGGTTGCTAAGTGCTGATTCC
1 GG-GGTTGCTAAGTGCTGATTCC
19255475 ACCATATCTT
Statistics
Matches: 179, Mismatches: 15, Indels: 65
0.69 0.06 0.25
Matches are distributed among these distances:
27 37 0.21
28 7 0.04
29 1 0.01
31 4 0.02
32 6 0.03
33 60 0.34
34 6 0.03
35 2 0.01
36 1 0.01
37 3 0.02
38 5 0.03
39 2 0.01
40 4 0.02
41 2 0.01
42 37 0.21
43 2 0.01
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.32
Consensus pattern (32 bp):
GGGGTTGCTAAGTGCTGATTCCCCGACTCATT
Found at i:19255327 original size:27 final size:31
Alignment explanation
Indices: 19255293--19255372 Score: 105
Period size: 27 Copynumber: 2.6 Consensus size: 31
19255283 ATATAAAGAA
19255293 GGTTGCTAAGTGCTGATTCCC-A-CA-AGG-
1 GGTTGCTAAGTGCTGATTCCCGATCATAGGT
*
19255320 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
1 GGTTGCTAAGTGCTGATT-CCCGA-TCATAGGT
19255353 GGTTGCTAAGTGCTGATTCC
1 GGTTGCTAAGTGCTGATTCC
19255373 ACCGTATTTT
Statistics
Matches: 46, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
27 18 0.39
28 3 0.07
29 1 0.02
31 2 0.04
32 4 0.09
33 18 0.39
ACGTcount: A:0.17, C:0.21, G:0.29, T:0.33
Consensus pattern (31 bp):
GGTTGCTAAGTGCTGATTCCCGATCATAGGT
Found at i:19255335 original size:102 final size:101
Alignment explanation
Indices: 19255216--19255518 Score: 453
Period size: 102 Copynumber: 3.0 Consensus size: 101
19255206 AAATGTGAAG
*
19255216 GGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTT
* *
19255281 GAATATAAAGAAGGTTGCTAAGTGCTGATTCCCACAA
66 GAATGTAAAG-GGGTTGCTAAGTGCTGATTCCCACAA
* *
19255318 GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTT
* * *
19255383 AAATGTGAAGGGGGTTGCTAAGTGCTGATTCCCCCAA
66 GAATGT-AAAGGGGTTGCTAAGTGCTGATTCCCACAA
* * * *
19255420 GGGGTTGCTATGTGCTGATTTCCCGAATCATTGGCGGTTGCTAAGTGCTGATTCCACCATATCTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATC-T
*
19255485 TGAATGTGAAAGGGGTTGCTAAGTACTGATTCCC
65 TGAATGT-AAAGGGGTTGCTAAGTGCTGATTCCC
19255519 CGAATCAATG
Statistics
Matches: 183, Mismatches: 16, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
102 148 0.81
103 35 0.19
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.32
Consensus pattern (101 bp):
GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTT
GAATGTAAAGGGGTTGCTAAGTGCTGATTCCCACAA
Found at i:19255576 original size:69 final size:69
Alignment explanation
Indices: 19255465--19255606 Score: 266
Period size: 69 Copynumber: 2.1 Consensus size: 69
19255455 GGTTGCTAAG
19255465 TGCTGATTCCACCATATCTTTGAATGTGAAAGGGGTTGCTAAGTACTGATTCCCCGAATCAATGG
1 TGCTGATTCCACCATATCTTTGAATGTGAAAGGGGTTGCTAAGTACTGATTCCCCGAATCAATGG
19255530 TGGT
66 TGGT
* *
19255534 TGCTGATTCCACCATATCTTTGAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGG
1 TGCTGATTCCACCATATCTTTGAATGTGAAAGGGGTTGCTAAGTACTGATTCCCCGAATCAATGG
19255599 TGGT
66 TGGT
19255603 TGCT
1 TGCT
19255607 AAGTGCTAAA
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 71 1.00
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (69 bp):
TGCTGATTCCACCATATCTTTGAATGTGAAAGGGGTTGCTAAGTACTGATTCCCCGAATCAATGG
TGGT
Found at i:19262895 original size:33 final size:33
Alignment explanation
Indices: 19262853--19263082 Score: 166
Period size: 33 Copynumber: 6.6 Consensus size: 33
19262843 ATGTGAAGGG
19262853 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
* *
19262886 GGTTGCTAAGTGCTGATTCCACCGTATCTTGAATATAAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A-C-T-CAT-T---GGT
*
19262928 GGTTGCTAAGTGCTGATT-CCC-A--CA-AGG-
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
*
19262955 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
* * *
19262988 GGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTAAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A--CT-CAT-T---GGT
* * *
19263030 GGTTGCTAAGTGCTGATTCCCCAAATCATTAGT
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
19263063 GGTTGCTAAGTGCTGATTCC
1 GGTTGCTAAGTGCTGATTCC
19263083 ACCATATCTT
Statistics
Matches: 161, Mismatches: 12, Indels: 48
0.73 0.05 0.22
Matches are distributed among these distances:
27 18 0.11
28 5 0.03
29 1 0.01
31 2 0.01
32 2 0.01
33 62 0.39
34 6 0.04
35 2 0.01
36 2 0.01
37 5 0.03
38 6 0.04
39 2 0.01
40 3 0.02
41 3 0.02
42 42 0.26
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.33
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
Found at i:19262962 original size:27 final size:30
Alignment explanation
Indices: 19262926--19263007 Score: 107
Period size: 27 Copynumber: 2.7 Consensus size: 30
19262916 GAATATAAAG
19262926 GGGGTTGCTAAGTGCTGATTCCC-A-CA-A
1 GGGGTTGCTAAGTGCTGATTCCCGATCATA
*
19262953 GGGGTTGCTAAGTGCTGATTCCCCGATTCATT
1 GGGGTTGCTAAGTGCTGATT-CCCGA-TCATA
19262985 GGTGGTTGCTAAGTGCTGATTCC
1 GG-GGTTGCTAAGTGCTGATTCC
19263008 ACCGTATTTT
Statistics
Matches: 48, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
27 20 0.42
28 3 0.06
29 1 0.02
31 2 0.04
32 4 0.08
33 18 0.38
ACGTcount: A:0.17, C:0.21, G:0.30, T:0.32
Consensus pattern (30 bp):
GGGGTTGCTAAGTGCTGATTCCCGATCATA
Found at i:19262975 original size:102 final size:106
Alignment explanation
Indices: 19262851--19263082 Score: 373
Period size: 102 Copynumber: 2.2 Consensus size: 106
19262841 AAATGTGAAG
19262851 GGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTT
1 GGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTT
*
19262916 GAATATAAAGGGGGTTGCTAAGTGCTGATT-CCC-A-CA-A
66 AAATATAAAGGGGGTTGCTAAGTGCTGATTCCCCAATCATA
* *
19262953 GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTT
1 GGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTT
*
19263018 AAATGTAAAGGGGGTTGCTAAGTGCTGATTCCCCAAATCATTA
66 AAATATAAAGGGGGTTGCTAAGTGCTGATTCCCC-AATCA-TA
*
19263061 GTGGTTGCTAAGTGCTGATTCC
1 GGGGTTGCTAAGTGCTGATTCC
19263083 ACCATATCTT
Statistics
Matches: 119, Mismatches: 5, Indels: 6
0.92 0.04 0.05
Matches are distributed among these distances:
102 91 0.76
103 3 0.03
105 1 0.01
106 2 0.02
108 22 0.18
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.32
Consensus pattern (106 bp):
GGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTT
AAATATAAAGGGGGTTGCTAAGTGCTGATTCCCCAATCATA
Found at i:19263043 original size:75 final size:76
Alignment explanation
Indices: 19262951--19263163 Score: 306
Period size: 75 Copynumber: 2.8 Consensus size: 76
19262941 TGATTCCCAC
* *
19262951 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTAT-
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTAGTGGTTGCTAAGTGCTGATTCCACCGTATC
19263015 TTTAAATGT-A
66 TTTAAATGTGA
* *
19263025 AAGGGGGTTGCTAAGTGCTGATTCCCCAAATCATTAGTGGTTGCTAAGTGCTGATTCCACCATAT
1 AA-GGGGTTGCTAAGTGCTGATTCCCCGAATCATTAGTGGTTGCTAAGTGCTGATTCCACCGTAT
*
19263090 CTTTGAATGTGA
65 CTTTAAATGTGA
* * *
19263102 AAGGGGTTGCTAAGTGTTGATTCCCCGAAAAT-ACTAGTGGTTGCTAAGTGCTGAATCCACCG
1 AAGGGGTTGCTAAGTGCTGATTCCCCG--AATCATTAGTGGTTGCTAAGTGCTGATTCCACCG
19263164 ATAACGGTTA
Statistics
Matches: 124, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
74 2 0.02
75 58 0.47
76 31 0.25
77 30 0.24
78 3 0.02
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (76 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTAGTGGTTGCTAAGTGCTGATTCCACCGTATC
TTTAAATGTGA
Found at i:19263047 original size:42 final size:39
Alignment explanation
Indices: 19262988--19263125 Score: 126
Period size: 33 Copynumber: 3.5 Consensus size: 39
19262978 ATTCATTGGT
19262988 GGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTAAAGGG
1 GGTTGCTAAGTGCTGATTCCACC-TATTTT-AATGTAAA-GG
** * *
19263030 GGTTGCTAAGTGCTGATTCC-CC-A-AATCAT-T--AGT
1 GGTTGCTAAGTGCTGATTCCACCTATTTTAATGTAAAGG
19263063 GGTTGCTAAGTGCTGATTCCACCATATCTTTGAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCCACC-TAT-TTT-AATGT-AAAGG
*
19263106 GGTTGCTAAGTGTTGATTCC
1 GGTTGCTAAGTGCTGATTCC
19263126 CCGAAAATAC
Statistics
Matches: 77, Mismatches: 9, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
33 21 0.27
34 3 0.04
36 2 0.03
37 2 0.03
38 2 0.03
39 3 0.04
40 1 0.01
41 2 0.03
42 20 0.26
43 21 0.27
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (39 bp):
GGTTGCTAAGTGCTGATTCCACCTATTTTAATGTAAAGG
Found at i:19271145 original size:22 final size:22
Alignment explanation
Indices: 19271120--19271163 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
19271110 TCATGATGTC
*
19271120 ATAATTAAAAAATATATTAAAA
1 ATAAATAAAAAATATATTAAAA
* *
19271142 ATAAATAAATAATATTTTAAAA
1 ATAAATAAAAAATATATTAAAA
19271164 CCTATTTCCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (22 bp):
ATAAATAAAAAATATATTAAAA
Found at i:19271197 original size:10 final size:9
Alignment explanation
Indices: 19271168--19271201 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
19271158 TTAAAACCTA
19271168 TTTCCATTT
1 TTTCCATTT
19271177 TTTCCATTT
1 TTTCCATTT
*
19271186 TTTCCTTCTT
1 TTTCCAT-TT
19271196 TTTCCA
1 TTTCCA
19271202 GGTTTTTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 15 0.68
10 7 0.32
ACGTcount: A:0.09, C:0.26, G:0.00, T:0.65
Consensus pattern (9 bp):
TTTCCATTT
Found at i:19273728 original size:29 final size:29
Alignment explanation
Indices: 19273673--19273728 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
19273663 TAACCATAAC
* * *
19273673 TATCGGATTAGGCCGGTTTTTGTGAAATT
1 TATCGGATTAGGCCGATTTTGGAGAAATT
19273702 TATCGGATTAGGCCGATTTTGGAGAAA
1 TATCGGATTAGGCCGATTTTGGAGAAA
19273729 GAAAGGGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.25, C:0.11, G:0.29, T:0.36
Consensus pattern (29 bp):
TATCGGATTAGGCCGATTTTGGAGAAATT
Found at i:19276294 original size:139 final size:137
Alignment explanation
Indices: 19276121--19276482 Score: 396
Period size: 138 Copynumber: 2.6 Consensus size: 137
19276111 GGGTGTGACA
* * *
19276121 TGTATTTTTTATTTAATGTTGCTTAAAGCTTTTTAAATTTTTAACTAAATTTTTTAACATATTAG
1 TGTATTTTTTATTTCATGTTGCTTCAAGTTTTTTAAA-TTTTAA-T-AATTTTTTAACATATTAG
* * * * * *
19276186 GT-TTTTGGTTAGATGGTTAGATAGTTGCAAATACATCCTTGAGTCTCG-GGTTAGATTCTTTTC
63 CTATTTTCGTTAGATGGTTAGATAGTTGCAAATACATCCTTAAATCTCGAGG-TAGATTCTTCTA
*
19276249 CTATTCACATT
127 CTACTCACATT
* *
19276260 TGTATTTTTTATTTCATGATGCTTCAAGTTTTTTAAAATTTTAATTAATTTTTT-ACATATTAGT
1 TGTATTTTTTATTTCATGTTGCTTCAAGTTTTTT-AAATTTTAA-TAATTTTTTAACATATTAGC
** * * * *
19276324 TATTTTTATTAGATCGTTAGATAGTTGCAATTACATCCTTAAATCTCGAGGTCGATTCTTCTATT
64 TATTTTCGTTAGATGGTTAGATAGTTGCAAATACATCCTTAAATCTCGAGGTAGATTCTTCTACT
*
19276389 ACTCGCATT
129 ACTCACATT
* *
19276398 TGTATTTTTTTTATTTCATGTTGCTTCAAACTTTTTTTAA--TTAAT-A-TTTTTAACATATTAG
1 TGTA--TTTTTTATTTCATGTTGCTTC-AAGTTTTTTAAATTTTAATAATTTTTTAACATATTAG
*
19276459 CTACTTTCGTTAGATGGTTAGATA
63 CTATTTTCGTTAGATGGTTAGATA
19276483 ATTACGATTA
Statistics
Matches: 190, Mismatches: 26, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
135 5 0.03
136 29 0.15
137 11 0.06
138 73 0.38
139 39 0.21
140 25 0.13
141 8 0.04
ACGTcount: A:0.26, C:0.11, G:0.12, T:0.51
Consensus pattern (137 bp):
TGTATTTTTTATTTCATGTTGCTTCAAGTTTTTTAAATTTTAATAATTTTTTAACATATTAGCTA
TTTTCGTTAGATGGTTAGATAGTTGCAAATACATCCTTAAATCTCGAGGTAGATTCTTCTACTAC
TCACATT
Found at i:19277605 original size:62 final size:61
Alignment explanation
Indices: 19277470--19277606 Score: 159
Period size: 62 Copynumber: 2.2 Consensus size: 61
19277460 AATTTTATTT
* *
19277470 TTTTATTTAAAACTTGAAATTAGTAAAAACTCAATGTTTGGTTTATCATTGTTTAAAATTA
1 TTTTATTTAAAACTTGAAATTAGTAAAAACTCAATGTTTGCTTTATCATTATTTAAAATTA
* * ** * *
19277531 TCTCACTATTAAATTTTGAAATTAGTAAAAA-TCAGTGTTTGCTTTATCATTATTTTAAATTAA
1 TTTTA-T-TTAAAACTTGAAATTAGTAAAAACTCAATGTTTGCTTTATCATTATTTAAAATT-A
19277594 TTTTATGTTAAAA
1 TTTTAT-TTAAAA
19277607 AATGAATGCA
Statistics
Matches: 61, Mismatches: 12, Indels: 5
0.78 0.15 0.06
Matches are distributed among these distances:
61 3 0.05
62 33 0.54
63 25 0.41
ACGTcount: A:0.37, C:0.07, G:0.09, T:0.47
Consensus pattern (61 bp):
TTTTATTTAAAACTTGAAATTAGTAAAAACTCAATGTTTGCTTTATCATTATTTAAAATTA
Found at i:19288080 original size:15 final size:14
Alignment explanation
Indices: 19288038--19288091 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
19288028 GATTGAGAGT
* * *
19288038 AAAATATTTTCCGT
1 AAAATGTTTTCTGG
*
19288052 AAAATGATTTCTGG
1 AAAATGTTTTCTGG
19288066 AAAATGTTTTACTGG
1 AAAATGTTTT-CTGG
*
19288081 AAAATATTTTC
1 AAAATGTTTTC
19288092 CGGTGTTTGA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
14 20 0.61
15 13 0.39
ACGTcount: A:0.37, C:0.09, G:0.13, T:0.41
Consensus pattern (14 bp):
AAAATGTTTTCTGG
Found at i:19289208 original size:24 final size:25
Alignment explanation
Indices: 19289179--19289228 Score: 77
Period size: 24 Copynumber: 2.0 Consensus size: 25
19289169 AACATTTTAA
19289179 ATTTTAAA-TTT-AAAATTATATTTT
1 ATTTTAAATTTTAAAAATTAT-TTTT
19289203 ATTTTAAATTTTAAAAATTATTTTT
1 ATTTTAAATTTTAAAAATTATTTTT
19289228 A
1 A
19289229 AAAATATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 8 0.33
25 8 0.33
26 8 0.33
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (25 bp):
ATTTTAAATTTTAAAAATTATTTTT
Found at i:19298531 original size:17 final size:17
Alignment explanation
Indices: 19298471--19298995 Score: 217
Period size: 17 Copynumber: 29.8 Consensus size: 17
19298461 GAAAGTTTTT
*
19298471 TTTTTAAAAACACGAGAA
1 TTTTT-AAAACACGAAAA
*
19298489 TTTTT-AAACACGGAAA
1 TTTTTAAAACACGAAAA
*
19298505 -TTTCAGAAACACGAAAA
1 TTTTTA-AAACACGAAAA
* *
19298522 TTTTTAAAACACGACAT
1 TTTTTAAAACACGAAAA
* *
19298539 TTTTTGAAACACGAGAA
1 TTTTTAAAACACGAAAA
* * *
19298556 TTTTTAAAACAAGACAT
1 TTTTTAAAACACGAAAA
* **
19298573 TTTTTGAAACAC-AATT
1 TTTTTAAAACACGAAAA
**
19298589 TTTTTCTTAA-A--AAAA
1 TTTTT-AAAACACGAAAA
* *
19298604 -TTTTAAAATACGAGAA
1 TTTTTAAAACACGAAAA
*
19298620 TTTTTAAAACACAAAAA
1 TTTTTAAAACACGAAAA
*
19298637 TTTTTAAAACACAAAAA
1 TTTTTAAAACACGAAAA
* *
19298654 TTTTTGAAACACGGAAAT
1 TTTTTAAAACAC-GAAAA
* ***
19298672 TTTTTAGAAA-ATGATTTT
1 TTTTTA-AAACACGA-AAA
* *
19298690 TTTTTAAAATCACCG-GAG
1 TTTTTAAAA-CA-CGAAAA
19298708 TTTTTGAAAACACGAAAA
1 TTTTT-AAAACACGAAAA
* *
19298726 TCTTTGAAACACCG-AAA
1 TTTTTAAAACA-CGAAAA
*
19298743 TTTTTGAAAACACGAAGA
1 TTTTT-AAAACACGAAAA
*
19298761 TTTTTGAAACACGAAAA
1 TTTTTAAAACACGAAAA
* *
19298778 TTTTTTGAAAATACGAAGATT
1 -TTTTT-AAAACACGAA-A-A
** *
19298799 TTTTTTTAACACGGAAA
1 TTTTTAAAACACGAAAA
* ***
19298816 TTTTTGAAACACGGTCATTTTT
1 TTTTTAAAACAC-G--A--AAA
19298838 TTTTTGAAAACACGAAAA
1 TTTTT-AAAACACGAAAA
* **
19298856 TTTTTGAAAGACATG-ATT
1 TTTTT-AAA-ACACGAAAA
* *
19298874 TTTTTGAAAATACGGAAA
1 TTTTT-AAAACACGAAAA
*
19298892 TTTATAAAACACGAAAA
1 TTTTTAAAACACGAAAA
*
19298909 TTTTTTCTGAAAACAAGAAAA
1 --TTTT-T-AAAACACGAAAA
* * *
19298930 TTTTTGAAACACTAGAA
1 TTTTTAAAACACGAAAA
* *
19298947 TTTTGAAAACACGAAGA
1 TTTTTAAAACACGAAAA
* * *
19298964 TTTTTGAAACATGAGAA
1 TTTTTAAAACACGAAAA
19298981 TTTTTAAAAGCACGA
1 TTTTTAAAA-CACGA
19298996 GTATTATTGA
Statistics
Matches: 377, Mismatches: 94, Indels: 72
0.69 0.17 0.13
Matches are distributed among these distances:
13 2 0.01
14 5 0.01
15 5 0.01
16 20 0.05
17 193 0.51
18 87 0.23
19 33 0.09
20 9 0.02
21 11 0.03
22 6 0.02
23 6 0.02
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.34
Consensus pattern (17 bp):
TTTTTAAAACACGAAAA
Found at i:19298675 original size:18 final size:18
Alignment explanation
Indices: 19298654--19298829 Score: 84
Period size: 18 Copynumber: 9.8 Consensus size: 18
19298644 AACACAAAAA
19298654 TTTTTGAAACACGGAAAT
1 TTTTTGAAACACGGAAAT
* **
19298672 TTTTTAGAAA-A-TGATTTT
1 TTTTT-GAAACACGGA-AAT
* *
19298690 TTTTTAAAATCACCGG-AGT
1 TTTTTGAAA-CA-CGGAAAT
*
19298709 -TTTTGAAAACAC-GAAAA
1 TTTTTG-AAACACGGAAAT
* *
19298726 TCTTTGAAACACCGAAA-
1 TTTTTGAAACACGGAAAT
19298743 TTTTTGAAAACAC-GAAGA-
1 TTTTTG-AAACACGGAA-AT
*
19298761 TTTTTGAAACACGAAAAT
1 TTTTTGAAACACGGAAAT
*
19298779 TTTTTGAAAATAC-GAAGATT
1 TTTTTG-AAACACGGAA-A-T
**
19298799 TTTTTTTAACACGGAAA-
1 TTTTTGAAACACGGAAAT
19298816 TTTTTGAAACACGG
1 TTTTTGAAACACGG
19298830 TCATTTTTTT
Statistics
Matches: 120, Mismatches: 20, Indels: 37
0.68 0.11 0.21
Matches are distributed among these distances:
16 1 0.01
17 40 0.33
18 49 0.41
19 20 0.17
20 9 0.08
21 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.35
Consensus pattern (18 bp):
TTTTTGAAACACGGAAAT
Found at i:19298739 original size:35 final size:35
Alignment explanation
Indices: 19298708--19298794 Score: 122
Period size: 35 Copynumber: 2.5 Consensus size: 35
19298698 ATCACCGGAG
19298708 TTTTTGAAAACACGAAAATCTTTGAAACACCGAAA
1 TTTTTGAAAACACGAAAATCTTTGAAACACCGAAA
* *
19298743 TTTTTGAAAACACGAAGATTTTTGAAACA-CGAAAA
1 TTTTTGAAAACACGAAAATCTTTGAAACACCG-AAA
*
19298778 TTTTTTGAAAATACGAA
1 -TTTTTGAAAACACGAA
19298795 GATTTTTTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
34 2 0.04
35 30 0.64
36 15 0.32
ACGTcount: A:0.45, C:0.13, G:0.13, T:0.30
Consensus pattern (35 bp):
TTTTTGAAAACACGAAAATCTTTGAAACACCGAAA
Found at i:19298876 original size:36 final size:36
Alignment explanation
Indices: 19298728--19298974 Score: 152
Period size: 36 Copynumber: 6.8 Consensus size: 36
19298718 CACGAAAATC
*
19298728 TTTG-AAACACCG-AAATTTTTGAAAACACGAAGA--TT
1 TTTGAAAACA-CGAAAATTTTTG-AAACAC-ATGATTTT
* *
19298763 TTTG-AAACACGAAAATTTTTTGAAAATACGAAGATTTT
1 TTTGAAAACACGAAAA-TTTTTG-AAACAC-ATGATTTT
** * **
19298801 TTT-TTAACACGGAAATTTTTGAAACACGGTCATTTTTTT
1 TTTGAAAACACGAAAATTTTTGAAACA----CATGATTTT
*
19298840 TTTGAAAACACGAAAATTTTTGAAAGACATGATTTT
1 TTTGAAAACACGAAAATTTTTGAAACACATGATTTT
* * * * **
19298876 TTTGAAAATACGGAAATTTATAAAACACGAAAATTTT
1 TTTGAAAACACGAAAATTTTTGAAACAC-ATGATTTT
* *
19298913 TTCTGAAAACAAGAAAATTTTTGAAACAC-TAGA--AT
1 TT-TGAAAACACGAAAATTTTTGAAACACAT-GATTTT
*
19298948 TTTGAAAACACGAAGATTTTTGAAACA
1 TTTGAAAACACGAAAATTTTTGAAACA
19298975 TGAGAATTTT
Statistics
Matches: 169, Mismatches: 30, Indels: 27
0.75 0.13 0.12
Matches are distributed among these distances:
34 25 0.15
35 15 0.09
36 51 0.30
37 15 0.09
38 35 0.21
39 8 0.05
40 20 0.12
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (36 bp):
TTTGAAAACACGAAAATTTTTGAAACACATGATTTT
Found at i:19298877 original size:40 final size:39
Alignment explanation
Indices: 19298761--19298941 Score: 128
Period size: 38 Copynumber: 4.7 Consensus size: 39
19298751 AACACGAAGA
* *
19298761 TTTTTGAAACACGAAAATTTTTTGAAAATACGAAGA-TTTT
1 TTTTTGAAACACGAAAA-TTTTTG-AAACACGATGATTTTT
* * *
19298801 TTTTT--AACACGGAAATTTTTGAAACACGGTCATTTTT
1 TTTTTGAAACACGAAAATTTTTGAAACACGATGATTTTT
*
19298838 TTTTTGAAAACACGAAAATTTTTGAAAGAC-ATGA---TT
1 TTTTTG-AAACACGAAAATTTTTGAAACACGATGATTTTT
* * * * **
19298874 TTTTTGAAAATACGGAAATTTATAAAACACGA--AAATTT
1 TTTTTG-AAACACGAAAATTTTTGAAACACGATGATTTTT
* *
19298912 TTTCTGAAAACAAGAAAATTTTTGAAACAC
1 TTTTTG-AAACACGAAAATTTTTGAAACAC
19298942 TAGAATTTTG
Statistics
Matches: 113, Mismatches: 20, Indels: 18
0.75 0.13 0.12
Matches are distributed among these distances:
35 1 0.01
36 34 0.30
37 16 0.14
38 35 0.31
39 2 0.02
40 25 0.22
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (39 bp):
TTTTTGAAACACGAAAATTTTTGAAACACGATGATTTTT
Found at i:19299343 original size:9 final size:9
Alignment explanation
Indices: 19299329--19299392 Score: 58
Period size: 9 Copynumber: 6.8 Consensus size: 9
19299319 CGAATTGAAC
19299329 CTTTTTTTT
1 CTTTTTTTT
*
19299338 CTTTTTTTC
1 CTTTTTTTT
19299347 CTTCTTTTTT
1 CTT-TTTTTT
19299357 CCTTCTCTTTTT
1 -CTT-T-TTTTT
*
19299369 CTTCTTTTT
1 CTTTTTTTT
*
19299378 CTTTTCTTT
1 CTTTTTTTT
19299387 -TTTTTT
1 CTTTTTT
19299393 CTCTGCTGGG
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
8 5 0.11
9 23 0.50
10 5 0.11
11 8 0.17
12 5 0.11
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (9 bp):
CTTTTTTTT
Done.