Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 70 of 240
Found at i:22507066 original size:30 final size:30
Alignment explanation
Indices: 22506977--22507065 Score: 144
Period size: 30 Copynumber: 3.0 Consensus size: 30
22506967 TGAAAACTTT
22506977 TATTTAAAAATAATAGGAAATTATTAAAAAG
1 TATTT-AAAATAATAGGAAATTATTAAAAAG
*
22507008 TGTTTAAAATAATAGGAAATTATTAAAAAG
1 TATTTAAAATAATAGGAAATTATTAAAAAG
*
22507038 TATTTTAAA-AATAGGAAATTATTAAAAA
1 TATTTAAAATAATAGGAAATTATTAAAAA
22507066 ATAAAAAATT
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
29 19 0.35
30 32 0.58
31 4 0.07
ACGTcount: A:0.56, C:0.00, G:0.10, T:0.34
Consensus pattern (30 bp):
TATTTAAAATAATAGGAAATTATTAAAAAG
Found at i:22507134 original size:9 final size:9
Alignment explanation
Indices: 22507088--22507148 Score: 54
Period size: 9 Copynumber: 6.6 Consensus size: 9
22507078 CACTTAATTT
22507088 TTATATAAAA
1 TTATA-AAAA
22507098 TT-TCAAAAA
1 TTAT-AAAAA
22507107 TTATTTAAAAA
1 TTA--TAAAAA
* *
22507118 TGAAAAAAA
1 TTATAAAAA
22507127 TTATAAAAA
1 TTATAAAAA
22507136 -TATAAAAA
1 TTATAAAAA
22507144 TTATA
1 TTATA
22507149 TTTTTTTATG
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
8 8 0.19
9 23 0.55
10 3 0.07
11 7 0.17
12 1 0.02
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (9 bp):
TTATAAAAA
Found at i:22507134 original size:17 final size:17
Alignment explanation
Indices: 22507102--22507148 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
22507092 ATAAAATTTC
22507102 AAAAATTATTTAAAAATGAA
1 AAAAATTA--TAAAAAT-AA
*
22507122 AAAAATTATAAAAATAT
1 AAAAATTATAAAAATAA
22507139 AAAAATTATA
1 AAAAATTATA
22507149 TTTTTTTATG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 11 0.42
18 7 0.27
20 8 0.31
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (17 bp):
AAAAATTATAAAAATAA
Found at i:22515109 original size:6 final size:6
Alignment explanation
Indices: 22515100--22515133 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
22515090 AAGTGAACTG
*
22515100 CAAAAC CAAAAC CAAAAC CAAAAC CAAAAT CAAA
1 CAAAAC CAAAAC CAAAAC CAAAAC CAAAAC CAAA
22515134 TTCCTTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.68, C:0.29, G:0.00, T:0.03
Consensus pattern (6 bp):
CAAAAC
Found at i:22526655 original size:32 final size:33
Alignment explanation
Indices: 22526618--22526704 Score: 108
Period size: 32 Copynumber: 2.7 Consensus size: 33
22526608 TAAACGCGCG
*
22526618 ATTTTGTGAAATAATAACAAATAT-C-AGCTTTC
1 ATTTTGTGAAATAATAACAAATATACTA-CTTTA
* *
22526650 TTTTTGTGAAATATTAACAAAT-TACTACTTTA
1 ATTTTGTGAAATAATAACAAATATACTACTTTA
*
22526682 ATTTTGTGAAATGATAACAAATA
1 ATTTTGTGAAATAATAACAAATA
22526705 CTAACTTGGT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
31 1 0.02
32 44 0.96
33 1 0.02
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.40
Consensus pattern (33 bp):
ATTTTGTGAAATAATAACAAATATACTACTTTA
Found at i:22526768 original size:18 final size:18
Alignment explanation
Indices: 22526745--22526784 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
22526735 TAAAAACATA
22526745 ACAATAAAAAT-TATCGAT
1 ACAATAAAAATAT-TCGAT
*
22526763 ACAATATAAATATTCGAT
1 ACAATAAAAATATTCGAT
22526781 ACAA
1 ACAA
22526785 CGATAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 19 0.95
19 1 0.05
ACGTcount: A:0.55, C:0.12, G:0.05, T:0.28
Consensus pattern (18 bp):
ACAATAAAAATATTCGAT
Found at i:22528420 original size:13 final size:13
Alignment explanation
Indices: 22528402--22528426 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22528392 ACAAACGATA
22528402 AAATTTTCACACG
1 AAATTTTCACACG
22528415 AAATTTTCACAC
1 AAATTTTCACAC
22528427 ATTTTAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:22535848 original size:28 final size:28
Alignment explanation
Indices: 22535799--22535861 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
22535789 TTTTACCCCT
* *
22535799 ATAAAA-TTTTAATGATTTTACCCATCG
1 ATAAAATTTTTAACGATTATACCCATCG
* *
22535826 ATAAAATTTTTTACGATTATACCCTTCG
1 ATAAAATTTTTAACGATTATACCCATCG
22535854 -TAAAATTT
1 ATAAAATTT
22535862 CGAGAAAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 14 0.45
28 17 0.55
ACGTcount: A:0.37, C:0.14, G:0.06, T:0.43
Consensus pattern (28 bp):
ATAAAATTTTTAACGATTATACCCATCG
Found at i:22538349 original size:27 final size:27
Alignment explanation
Indices: 22538319--22538374 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
22538309 TAAGCATATC
22538319 AAATGCTTAGTAAGTTCATAATAAATT
1 AAATGCTTAGTAAGTTCATAATAAATT
22538346 AAATGCTTAGTAAGTTCATAATAAATT
1 AAATGCTTAGTAAGTTCATAATAAATT
22538373 AA
1 AA
22538375 CTTAACTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.46, C:0.07, G:0.11, T:0.36
Consensus pattern (27 bp):
AAATGCTTAGTAAGTTCATAATAAATT
Found at i:22539719 original size:70 final size:70
Alignment explanation
Indices: 22539606--22539745 Score: 271
Period size: 70 Copynumber: 2.0 Consensus size: 70
22539596 TGCGTTTAGG
22539606 AAATGAGGAGAGAAGTAGACTAAGACTATCAAAGCTTCCGTATAATTTAAGATTCAAGGTTTCTA
1 AAATGAGGAGAGAAGTAGACTAAGACTATCAAAGCTTCCGTATAATTTAAGATTCAAGGTTTCTA
22539671 AGAAA
66 AGAAA
22539676 AAATGAGGAGAGAAGTAGACTAAGACTATCAAAGCTTCCGTATAATTTAAGATTCAAGGTTTCTA
1 AAATGAGGAGAGAAGTAGACTAAGACTATCAAAGCTTCCGTATAATTTAAGATTCAAGGTTTCTA
*
22539741 GGAAA
66 AGAAA
22539746 TCTTCACCAT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.42, C:0.11, G:0.21, T:0.26
Consensus pattern (70 bp):
AAATGAGGAGAGAAGTAGACTAAGACTATCAAAGCTTCCGTATAATTTAAGATTCAAGGTTTCTA
AGAAA
Found at i:22541499 original size:15 final size:15
Alignment explanation
Indices: 22541446--22541502 Score: 51
Period size: 15 Copynumber: 3.6 Consensus size: 15
22541436 TTAATAAGAT
*
22541446 TTAATATTAAATTTAA
1 TTAATATTATA-TTAA
* *
22541462 TCTAATATTTATCTTGA
1 T-TAATA-TTATATTAA
*
22541479 TAAATATTATATTAA
1 TTAATATTATATTAA
22541494 TTAATATTA
1 TTAATATTA
22541503 AAGTGGTTAA
Statistics
Matches: 32, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
15 15 0.47
16 5 0.16
17 9 0.28
18 3 0.09
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.51
Consensus pattern (15 bp):
TTAATATTATATTAA
Found at i:22544008 original size:23 final size:24
Alignment explanation
Indices: 22543982--22544038 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
22543972 TAAATGTACT
*
22543982 TGTTCATGAACAT-TAAAT-GATCA
1 TGTTCATGAACATAT-AATCGAACA
* *
22544005 TGTTTATGTACATATAATCGAACA
1 TGTTCATGAACATATAATCGAACA
22544029 TGTTCATGAA
1 TGTTCATGAA
22544039 TAATAAACAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
23 14 0.52
24 13 0.48
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (24 bp):
TGTTCATGAACATATAATCGAACA
Found at i:22544212 original size:21 final size:22
Alignment explanation
Indices: 22544186--22544236 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
22544176 ATAAAACATA
*
22544186 ATAAATGAGGTT-TATATGAAC
1 ATAAATGAGCTTGTATATGAAC
* *
22544207 ATAAATGAGCTTGTTTGTGAAC
1 ATAAATGAGCTTGTATATGAAC
22544229 ATAAATGA
1 ATAAATGA
22544237 ATTGAATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 11 0.42
22 15 0.58
ACGTcount: A:0.41, C:0.06, G:0.20, T:0.33
Consensus pattern (22 bp):
ATAAATGAGCTTGTATATGAAC
Found at i:22547688 original size:25 final size:25
Alignment explanation
Indices: 22547654--22547701 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
22547644 TTATTTTTTT
*
22547654 TAAATATATAAAAATC-TAAAAAAAC
1 TAAAAATAT-AAAATCATAAAAAAAC
22547679 TAAAAATATAAAATCATAAAAAA
1 TAAAAATATAAAATCATAAAAAA
22547702 GTTATGAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (25 bp):
TAAAAATATAAAATCATAAAAAAAC
Found at i:22547756 original size:18 final size:17
Alignment explanation
Indices: 22547680--22547756 Score: 57
Period size: 18 Copynumber: 4.3 Consensus size: 17
22547670 TAAAAAAACT
*
22547680 AAAAATATAAAATCATA
1 AAAAATATAAAATTATA
*
22547697 AAAAAGTTATGAATATTAT-
1 AAAAA--TAT-AAAATTATA
* *
22547716 AAAAATGTAGAATTTATA
1 AAAAATATA-AAATTATA
*
22547734 AAAAATATAAATTTTATA
1 AAAAATATAAA-ATTATA
22547752 AAAAA
1 AAAAA
22547757 AATTACTAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
16 1 0.02
17 14 0.29
18 19 0.40
19 8 0.17
20 6 0.12
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.31
Consensus pattern (17 bp):
AAAAATATAAAATTATA
Found at i:22548077 original size:22 final size:23
Alignment explanation
Indices: 22548032--22548086 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 23
22548022 GAATTTTTAA
*
22548032 TATATTTAATTTTTATAGAGTTTCC
1 TATATTT-ATTTTTATAGAATTT-C
22548057 TATATTT-TTTTTATA-AATTTC
1 TATATTTATTTTTATAGAATTTC
22548078 TAATATTTA
1 T-ATATTTA
22548087 ATATATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 2 0.07
22 10 0.37
23 8 0.30
25 7 0.26
ACGTcount: A:0.31, C:0.05, G:0.04, T:0.60
Consensus pattern (23 bp):
TATATTTATTTTTATAGAATTTC
Found at i:22548112 original size:18 final size:18
Alignment explanation
Indices: 22548065--22548113 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
22548055 CCTATATTTT
22548065 TTTTATAAATTTCTAATA
1 TTTTATAAATTTCTAATA
* * *
22548083 TTTAATATATTTTTAA-A
1 TTTTATAAATTTCTAATA
22548100 TTTGTATAAATTTC
1 TTT-TATAAATTTC
22548114 CTATAATTCT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
17 4 0.17
18 20 0.83
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (18 bp):
TTTTATAAATTTCTAATA
Found at i:22562806 original size:43 final size:44
Alignment explanation
Indices: 22562754--22562869 Score: 128
Period size: 44 Copynumber: 2.7 Consensus size: 44
22562744 TTTTAACCCA
* * * *
22562754 CTCCACTGTAACTTCAGGGAGATAGGAT-AGTGTCTTCGATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCACTGGCTTCAATCTG
* * *
22562797 CTCCGCTGTAA-TCTCGGGGAGATAAGATCTCTGGCTTCAATCTG
1 CTCCACTGTAACT-TCAGGGAGATAAGATCACTGGCTTCAATCTG
* *
22562841 CTCCACTGTAACTTCAGGGGGACAAGATC
1 CTCCACTGTAACTTCAGGGAGATAAGATC
22562870 TTGTAATTTA
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
42 1 0.02
43 23 0.39
44 34 0.58
45 1 0.02
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (44 bp):
CTCCACTGTAACTTCAGGGAGATAAGATCACTGGCTTCAATCTG
Found at i:22563111 original size:86 final size:86
Alignment explanation
Indices: 22563005--22563277 Score: 361
Period size: 86 Copynumber: 3.2 Consensus size: 86
22562995 AATCTGTAAC
* * * *
22563005 CTTTAACCAGCTCCAATGCAACCGATGGAGGCAAGGCTTTGTTTTTGATCTGCTTTGTTGTTAAT
1 CTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAAT
22563070 GCAGGAAGGCAAGATCTGCTT
66 GCAGGAAGGCAAGATCTGCTT
* * *
22563091 CTTTAACTAGCTCCACTGCAATCGATGGATGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAAT
1 CTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAAT
*
22563156 GTAGGAAGGCAAGATCTGCTT
66 GCAGGAAGGCAAGATCTGCTT
* * * *
22563177 CTTTAACCAGCTCCACTACAACCGA-GAGAGGCAAGG-TTTGTGTCTTCGACCTGCTTCACTGTC
1 CTTTAACCAGCTCCACTGCAACCGATG-GAGGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTT
**
22563240 AATGCAGGAAGGCAAGATCTTTTGT
63 AATGCAGGAAGGCAAGATCTGCT-T
*
22563265 CTTCAACCAGCTC
1 CTTTAACCAGCTC
22563278 TATCACAACC
Statistics
Matches: 164, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
85 6 0.04
86 109 0.66
87 36 0.22
88 13 0.08
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (86 bp):
CTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAAT
GCAGGAAGGCAAGATCTGCTT
Found at i:22563300 original size:88 final size:87
Alignment explanation
Indices: 22563009--22563312 Score: 303
Period size: 86 Copynumber: 3.5 Consensus size: 87
22562999 TGTAACCTTT
* * ** * * *** *
22563009 AACCAGCTCCAATGCAACCGATGGAGGCAAGGCTTTGT-T-TTTGATCTGCTTTGTTGTTAATGC
1 AACCAGCTCCACTACAACCGAAAGAGGCAAGG-TTTGTGTCTTCGACCTGCTTCACTGTCAATGC
*
22563072 AGGAAGGCAAGATCTGCTTCTTT
65 AGGAAGGCAAGATCTGCTTCTTC
* * * ** * * * * *
22563095 AACTAGCTCCACTGCAATCGATGGATGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAATGT
1 AACCAGCTCCACTACAACCGAAAGAGGCAAGG-TTTGTGTCTTCGACCTGCTTCACTGTCAATGC
*
22563158 AGGAAGGCAAGATCTGCTTCTTT
65 AGGAAGGCAAGATCTGCTTCTTC
*
22563181 AACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATGCA
1 AACCAGCTCCACTACAACCGAAAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATGCA
**
22563246 GGAAGGCAAGATCTTTTGTCTTC
66 GGAAGGCAAGATCTGCT-TCTTC
*
22563269 AACCAGCTCTA-TCACAACCGAAAGAGGCAAGGTTTGTGTCTTCG
1 AACCAGCTCCACT-ACAACCGAAAGAGGCAAGGTTTGTGTCTTCG
22563313 CTTCCATCTA
Statistics
Matches: 191, Mismatches: 23, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
85 5 0.03
86 105 0.55
87 37 0.19
88 44 0.23
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (87 bp):
AACCAGCTCCACTACAACCGAAAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATGCA
GGAAGGCAAGATCTGCTTCTTC
Found at i:22563523 original size:44 final size:43
Alignment explanation
Indices: 22563474--22563798 Score: 180
Period size: 44 Copynumber: 7.6 Consensus size: 43
22563464 ATCTACTCTG
* * *
22563474 CTGTAACCTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCCTTT-TTTCAATCTGCTCCA
* * ** * * *
22563518 CTGTAACTTCAGGGAGATAGGATAGTGTTTTCGATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGATCCTTTTTTCAATCTGCTCCA
* ***
22563561 CTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
1 CTGTAACCTCAGGGAGATAAGATC-CTTTTTTCAATCTGCTCCA
* ** **
22563605 CTGTAACCTCAGGGAGATAAGATCCGAAATTCTTT-GGTCTATTCCA
1 CTGTAACCTCAGGGAGATAAGATCC----TTTTTTCAATCTGCTCCA
* ** * * * *
22563651 CTGTAATCTCAGGGAGATAAGA-CCTGATGT-GATCTTCTCTA
1 CTGTAACCTCAGGGAGATAAGATCCTTTTTTCAATCTGCTCCA
* * *
22563692 CTGTAACTTCAGAGAGATAAGATCC---TTT-AATCCGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCCTTTTTTCAATCTGCTCCA
* * * * * * * *
22563731 TTGTAATCTCAAGGAGATAGGATTACTATATTT-GATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGA-TCCT-TTTTTCAATCTGCTCCA
*
22563775 CTGTAATCTCAGGGAGATAAGATC
1 CTGTAACCTCAGGGAGATAAGATC
22563799 TGAAATTCTT
Statistics
Matches: 213, Mismatches: 57, Indels: 23
0.73 0.19 0.08
Matches are distributed among these distances:
39 25 0.12
40 2 0.01
41 29 0.14
42 2 0.01
43 33 0.15
44 89 0.42
45 2 0.01
46 28 0.13
47 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.31
Consensus pattern (43 bp):
CTGTAACCTCAGGGAGATAAGATCCTTTTTTCAATCTGCTCCA
Found at i:22563572 original size:87 final size:87
Alignment explanation
Indices: 22563462--22563623 Score: 218
Period size: 87 Copynumber: 1.9 Consensus size: 87
22563452 AGACCTGATG
* * * * *
22563462 CGATCTACTCTGCTGTAACCTCAGAGAGATAAGATC-CTTTATTTTAATCCGCTCCACTGTAACT
1 CGATCTACTCCGCTGTAACCTCAGAGAGATAAGATCTC-TGACTTCAATCCGCTCCACTGTAACC
22563526 TCAGGGAGATAGGATAGTGTTTT
65 TCAGGGAGATAGGATAGTGTTTT
* * * * *
22563549 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCT
1 CGATCTACTCCGCTGTAACCTCAGAGAGATAAGATCTCTGACTTCAATCCGCTCCACTGTAACCT
22563614 CAGGGAGATA
66 CAGGGAGATA
22563624 AGATCCGAAA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
87 63 0.98
88 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.30
Consensus pattern (87 bp):
CGATCTACTCCGCTGTAACCTCAGAGAGATAAGATCTCTGACTTCAATCCGCTCCACTGTAACCT
CAGGGAGATAGGATAGTGTTTT
Found at i:22563695 original size:87 final size:87
Alignment explanation
Indices: 22563561--22563886 Score: 278
Period size: 87 Copynumber: 3.8 Consensus size: 87
22563551 ATCTGCTCCG
* * * *
22563561 CTGTAATCTCAGGGAGATAAGATCTCTGGCT-TCAATCTGCTCCACTGTAACCTCAGGGAGATAA
1 CTGTAATCTCAGGGAGATAAGATC-CTAGATGT-GATCTGCTCCACTGTAACCTCAGAGAGATAA
22563625 GATCCGAAATTCTTTGGTCTATTCCA
64 GATCCGAAATTCTTTGG-CT-TTCCA
* * *
22563651 CTGTAATCTCAGGGAGATAAGA-CCT-GATGTGATCTTCTCTACTGTAACTTCAGAGAGATAAGA
1 CTGTAATCTCAGGGAGATAAGATCCTAGATGTGATCTGCTCCACTGTAACCTCAGAGAGATAAGA
** *
22563714 TCCTTTAA-TC---CGC--TCCA
66 TCC-GAAATTCTTTGGCTTTCCA
* * * * * * * * *
22563731 TTGTAATCTCAAGGAGATAGGATTACTATATTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAG
1 CTGTAATCTCAGGGAGATAAGA-TCCTAGATGTGATCTGCTCCACTGTAACCTCAGAGAGATAAG
*
22563796 ATCTGAAATTCTTTGGCCTGTTCCA
65 ATCCGAAATTCTTTGG-CT-TTCCA
* * * * *
22563821 CTATAATTTCAGGGAGATAAGA-CCT-GATGTGATCTTCTCTACTGTAACTTCAGAGAGATAAGA
1 CTGTAATCTCAGGGAGATAAGATCCTAGATGTGATCTGCTCCACTGTAACCTCAGAGAGATAAGA
22563884 TCC
66 TCC
22563887 TTTAATCCGC
Statistics
Matches: 183, Mismatches: 40, Indels: 29
0.73 0.16 0.12
Matches are distributed among these distances:
80 23 0.13
82 4 0.02
83 35 0.19
84 1 0.01
86 1 0.01
87 68 0.37
88 7 0.04
89 1 0.01
90 43 0.23
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (87 bp):
CTGTAATCTCAGGGAGATAAGATCCTAGATGTGATCTGCTCCACTGTAACCTCAGAGAGATAAGA
TCCGAAATTCTTTGGCTTTCCA
Found at i:22563749 original size:170 final size:169
Alignment explanation
Indices: 22563562--22563972 Score: 628
Period size: 170 Copynumber: 2.4 Consensus size: 169
22563552 TCTGCTCCGC
* ** * * *
22563562 TGTAATCTCAGGGAGATAAGATCT-CTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAG
1 TGTAATCTCAAGGAGATAAGAT-TACTACCTT-GATCTGCTCCGCTGTAATCTCAGGGAGATAAG
* *
22563626 ATCCGAAATTCTTTGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGTGATCTTCTCT
64 ATCCGAAATTCTTTGGCCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGTGATCTTCTCT
22563691 ACTGTAACTTCAGAGAGATAAGATCCTTTAATCCGCTCCAT
129 ACTGTAACTTCAGAGAGATAAGATCCTTTAATCCGCTCCAT
* **
22563732 TGTAATCTCAAGGAGATAGGATTACTATATTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
1 TGTAATCTCAAGGAGATAAGATTACTA-CCTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
* * *
22563797 TCTGAAATTCTTTGGCCTGTTCCACTATAATTTCAGGGAGATAAGACCTGATGTGATCTTCTCTA
65 TCCGAAATTCTTTGGCCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGTGATCTTCTCTA
22563862 CTGTAACTTCAGAGAGATAAGATCCTTTAATCCGCTCCAT
130 CTGTAACTTCAGAGAGATAAGATCCTTTAATCCGCTCCAT
*
22563902 TGTAATCTCAAGGAGA-CAGAATTACTATCCTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAG
1 TGTAATCTCAAGGAGATAAG-ATTACTA-CCTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAG
22563966 ATCCGAA
64 ATCCGAA
22563973 TCTTTAACCA
Statistics
Matches: 220, Mismatches: 18, Indels: 6
0.90 0.07 0.02
Matches are distributed among these distances:
169 2 0.01
170 216 0.98
171 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (169 bp):
TGTAATCTCAAGGAGATAAGATTACTACCTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
CCGAAATTCTTTGGCCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGTGATCTTCTCTAC
TGTAACTTCAGAGAGATAAGATCCTTTAATCCGCTCCAT
Found at i:22563792 original size:83 final size:83
Alignment explanation
Indices: 22563692--22563969 Score: 244
Period size: 83 Copynumber: 3.3 Consensus size: 83
22563682 ATCTTCTCTA
22563692 CTGTAACTTCAGAGAGATAAGATCCTTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGATTAC
1 CTGTAACTTCAGAGAGATAAGATCCTTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGATTAC
22563757 TATATTTGATCTGCTCCG
66 TATATTTGATCTGCTCCG
* ** * * * * *
22563775 CTGTAA-TCTCAGGGAGATAAGATCTGAAATTCTTT-GGCCTGTTCCACTATAATTTCAGGGAGA
1 CTGTAACT-TCAGAGAGATAAGATC-------CTTTAATCC-GCTCCATTGTAATCTCAAGGAGA
* * * * * **
22563838 TAAGA--CCT-GATGTGATCTTCTCTA
57 TAGGATTACTATATTTGATCTGCTCCG
* *
22563862 CTGTAACTTCAGAGAGATAAGATCCTTTAATCCGCTCCATTGTAATCTCAAGGAGACAGAATTAC
1 CTGTAACTTCAGAGAGATAAGATCCTTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGATTAC
**
22563927 TATCCTTGATCTGCTCCG
66 TATATTTGATCTGCTCCG
*
22563945 CTGTAA-TCTCAGGGAGATAAGATCC
1 CTGTAACT-TCAGAGAGATAAGATCC
22563970 GAATCTTTAA
Statistics
Matches: 145, Mismatches: 35, Indels: 30
0.69 0.17 0.14
Matches are distributed among these distances:
80 24 0.17
81 2 0.01
82 4 0.03
83 52 0.36
87 32 0.22
88 3 0.02
89 2 0.01
90 26 0.18
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (83 bp):
CTGTAACTTCAGAGAGATAAGATCCTTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGATTAC
TATATTTGATCTGCTCCG
Found at i:22564135 original size:42 final size:42
Alignment explanation
Indices: 22564000--22564135 Score: 107
Period size: 42 Copynumber: 3.2 Consensus size: 42
22563990 TGTAACCAAT
* *
22564000 GAAGGCAAAGCTTGTTTTCGATCTGCTTCGCTGTTAACGCAG
1 GAAGGCAAGGCTTGTTTTCGATCTACTTCGCTGTTAACGCAG
* ** * * * * * * *
22564042 GAAGGCAAGATCTACTTCTT-TAACCAGCTCCACTG-CAAC-CAAT
1 GAAGGCAAG-GCTTGTT-TTCGATCTA-CTTCGCTGTTAACGC-AG
22564085 GAAGGCAAGGCTTGTTTTCGATCTACTTCGCTGTTAACGCAG
1 GAAGGCAAGGCTTGTTTTCGATCTACTTCGCTGTTAACGCAG
22564127 GAAGGCAAG
1 GAAGGCAAG
22564136 ATCTGCTGTC
Statistics
Matches: 65, Mismatches: 22, Indels: 14
0.64 0.22 0.14
Matches are distributed among these distances:
41 8 0.12
42 29 0.45
43 20 0.31
44 8 0.12
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (42 bp):
GAAGGCAAGGCTTGTTTTCGATCTACTTCGCTGTTAACGCAG
Found at i:22564139 original size:85 final size:85
Alignment explanation
Indices: 22563973--22564139 Score: 307
Period size: 85 Copynumber: 2.0 Consensus size: 85
22563963 AAGATCCGAA
* *
22563973 TCTTTAACCAGCTCCACTGTAACCAATGAAGGCAAAGCTTGTTTTCGATCTGCTTCGCTGTTAAC
1 TCTTTAACCAGCTCCACTGCAACCAATGAAGGCAAAGCTTGTTTTCGATCTACTTCGCTGTTAAC
22564038 GCAGGAAGGCAAGATCTACT
66 GCAGGAAGGCAAGATCTACT
*
22564058 TCTTTAACCAGCTCCACTGCAACCAATGAAGGCAAGGCTTGTTTTCGATCTACTTCGCTGTTAAC
1 TCTTTAACCAGCTCCACTGCAACCAATGAAGGCAAAGCTTGTTTTCGATCTACTTCGCTGTTAAC
22564123 GCAGGAAGGCAAGATCT
66 GCAGGAAGGCAAGATCT
22564140 GCTGTCTTCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 79 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (85 bp):
TCTTTAACCAGCTCCACTGCAACCAATGAAGGCAAAGCTTGTTTTCGATCTACTTCGCTGTTAAC
GCAGGAAGGCAAGATCTACT
Found at i:22566302 original size:7 final size:8
Alignment explanation
Indices: 22566277--22566306 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
22566267 CTATTTTGAC
22566277 TTTGATTTT
1 TTTGA-TTT
22566286 TTTGATTT
1 TTTGATTT
22566294 TTTGATTT
1 TTTGATTT
22566302 TTTGA
1 TTTGA
22566307 ATTCATGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 16 0.76
9 5 0.24
ACGTcount: A:0.13, C:0.00, G:0.13, T:0.73
Consensus pattern (8 bp):
TTTGATTT
Found at i:22568914 original size:19 final size:20
Alignment explanation
Indices: 22568885--22568933 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
22568875 CACTTCGTGA
* *
22568885 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAGATGCATG
*
22568904 CAATGTAATGCAGATGCATG
1 AAATGTAATGCAGATGCATG
22568924 AAATG-AATGC
1 AAATGTAATGC
22568934 CTAAAGAGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (20 bp):
AAATGTAATGCAGATGCATG
Found at i:22577343 original size:42 final size:42
Alignment explanation
Indices: 22577281--22577365 Score: 134
Period size: 42 Copynumber: 2.0 Consensus size: 42
22577271 ACTCTCTTCT
*
22577281 ACTCCATACACACAATAGATATAAAATCTGCTAGAATAGATG
1 ACTCCATACACACAACAGATATAAAATCTGCTAGAATAGATG
* * *
22577323 ACTCCATACGCACAACAGATATAAGATGTGCTAGAATAGATG
1 ACTCCATACACACAACAGATATAAAATCTGCTAGAATAGATG
22577365 A
1 A
22577366 TGATTGATGC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.44, C:0.19, G:0.15, T:0.22
Consensus pattern (42 bp):
ACTCCATACACACAACAGATATAAAATCTGCTAGAATAGATG
Found at i:22579060 original size:19 final size:20
Alignment explanation
Indices: 22579036--22579073 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
22579026 AAATATTGAA
*
22579036 TTTATATTA-TAAACCTAAT
1 TTTATATTAGTAAAACTAAT
22579055 TTTATATTAGTAAAACTAA
1 TTTATATTAGTAAAACTAA
22579074 AAGTTAATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.45
Consensus pattern (20 bp):
TTTATATTAGTAAAACTAAT
Found at i:22579278 original size:15 final size:15
Alignment explanation
Indices: 22579260--22579299 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
22579250 AAATGAAGAG
22579260 TTAAAAAAATAAATA
1 TTAAAAAAATAAATA
* *
22579275 TTAAAAAAATAGATG
1 TTAAAAAAATAAATA
*
22579290 TTATAAAAAT
1 TTAAAAAAAT
22579300 TTTGGTTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (15 bp):
TTAAAAAAATAAATA
Found at i:22579933 original size:125 final size:125
Alignment explanation
Indices: 22579683--22579934 Score: 495
Period size: 125 Copynumber: 2.0 Consensus size: 125
22579673 AAGAACACAG
22579683 AGGCAACAAGAATAGTTGCATAAAATAGTAGTAAAACATATATGAATAGTGTAATCGTGGCTATA
1 AGGCAACAAGAATAGTTGCATAAAATAGTAGTAAAACATATATGAATAGTGTAATCGTGGCTATA
22579748 AAAGCCACGAAAATAGTTTGTAATTTTTTACAGAGAATCAATCAAAGAAGAATAGAAAAA
66 AAAGCCACGAAAATAGTTTGTAATTTTTTACAGAGAATCAATCAAAGAAGAATAGAAAAA
22579808 AGGCAACAAGAATAGTTGCATAAAATAGTAGTAAAACATATATGAATAGTGTAATCGTGGCTATA
1 AGGCAACAAGAATAGTTGCATAAAATAGTAGTAAAACATATATGAATAGTGTAATCGTGGCTATA
22579873 AAAGCCACGAAAATAGTTTGTAATTTTTTTACAGAGAATCAATCAAAGAAGAATAGAAAAA
66 AAAGCCACGAAAATAGTTTGTAA-TTTTTTACAGAGAATCAATCAAAGAAGAATAGAAAAA
22579934 A
1 A
22579935 TTCTTAAAAG
Statistics
Matches: 126, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
125 88 0.70
126 38 0.30
ACGTcount: A:0.48, C:0.10, G:0.17, T:0.25
Consensus pattern (125 bp):
AGGCAACAAGAATAGTTGCATAAAATAGTAGTAAAACATATATGAATAGTGTAATCGTGGCTATA
AAAGCCACGAAAATAGTTTGTAATTTTTTACAGAGAATCAATCAAAGAAGAATAGAAAAA
Found at i:22581037 original size:4 final size:4
Alignment explanation
Indices: 22581028--22581068 Score: 57
Period size: 4 Copynumber: 10.5 Consensus size: 4
22581018 ACTACTACTA
**
22581028 TTAT TTAT TTAT TTAT TTAT TTAT CCAT TTAT TTA- TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
22581069 GCTTTTTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
3 3 0.09
4 29 0.91
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (4 bp):
TTAT
Found at i:22582644 original size:19 final size:19
Alignment explanation
Indices: 22582620--22582661 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
22582610 AATTCTAGCT
22582620 TTGTATAAAATGTACTAAC
1 TTGTATAAAATGTACTAAC
*
22582639 TTGTATGAAATGTACTAAC
1 TTGTATAAAATGTACTAAC
22582658 TTGT
1 TTGT
22582662 TTCGTTTTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.40
Consensus pattern (19 bp):
TTGTATAAAATGTACTAAC
Found at i:22591535 original size:44 final size:44
Alignment explanation
Indices: 22591472--22592932 Score: 379
Period size: 44 Copynumber: 31.7 Consensus size: 44
22591462 GGTCACCGTG
* * *
22591472 ACAAATCTTATCTCTTTGAAGTTCCAGTGGAAAAGATTAAAG-T
1 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGAAGATTAAAGAT
* * * * *
22591515 CACAAAT-TTCATCTCATTGAAATGGCAGTGGAGTAGACTAAAGAT
1 -ACAAATCTT-ATCTCCTTGAAGTTGCAGTGGAGAAGATTAAAGAT
* * * *
22591560 ACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGAT
1 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGAAGATTAAAGAT
* * *
22591604 AGCAAATCTTATCT-CTATGAAGTTGCAGTAGAGCAGATTAAAGCT
1 A-CAAATCTTATCTCCT-TGAAGTTGCAGTGGAGAAGATTAAAGAT
* * *
22591649 ATAAATCTTATCTCCTTGAAGTTGCAGTGGAAAAGATTGAAGAT
1 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGAAGATTAAAGAT
* * *
22591693 AGCAAATCTTATCT-CTCTGAAGTTGCAGTAGAGTAGATTAAAGCT
1 A-CAAATCTTATCTCCT-TGAAGTTGCAGTGGAGAAGATTAAAGAT
* * * * *
22591738 ATAAATCTTATCTCCCTAAAGTTGCAGTGGAAAATATTAAAGAT
1 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGAAGATTAAAGAT
* *
22591782 AGCAAATCTTATCT-CTCTAAAGTTGCAGTAGAGCAA-ATTAAAGAT
1 A-CAAATCTTATCTCCT-TGAAGTTGCAGTGGAG-AAGATTAAAGAT
* * * * *
22591827 ATAAATCTTATCTCCCTGAAGCTGCAGTGGA-ACAGGTTGAAGAT
1 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGA-AGATTAAAGAT
* * * * * * * *
22591871 GCAAATCTTATTTCCCTAAAGCTACAATGGA-ATAGACTAAAGCTACAAGT
1 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGA-AGATTAAAG-----A-T
* * * * * *
22591921 CACAAAT-TCTATGC-CCCTGAAGTGGCAATGGAAAAAATTAAA-TT
1 -ACAAATCT-TAT-CTCCTTGAAGTTGCAGTGGAGAAGATTAAAGAT
*
22591965 CACAAAT-TTCATCTTCC-TGAAGTTGCAGTGGAGCAAG-TTAAAGCT
1 -ACAAATCTT-ATC-TCCTTGAAGTTGCAGTGGAG-AAGATTAAAGAT
* * * * *
22592010 ACAAATCGTATTTCCTTAAAGTTACGGTGGA-ACAGATTAAAGCTACAAGTT
1 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGA-AGATTAAAG-----A--T
* * * * * *
22592061 ACAAGTCTTATCTCCCTGAAGTTGCAATGAAGCAGATTGAAGAT
1 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGAAGATTAAAGAT
* * * * *
22592105 AGCAAATCTCATTTCCCTAAAGTTGTAGTGGA-ACAGATTAAAGCTACGAGTT
1 A-CAAATCTTATCTCCTTGAAGTTGCAGTGGAGA-AGATT-AA---A-GA--T
* * * * * * * * *
22592157 ATAAATCTTATATCCCTAAAGTTACAGTGGAGCATATTGAAGTT
1 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGAAGATTAAAGAT
* * * *
22592201 ACAAATCTTATCTCCCTGAAGTGGCAGTGGA-ACAGATTGAAGCT
1 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGA-AGATTAAAGAT
* * * * * * * * **
22592245 ATAGACCTTATTTCCCTGAAGTTGCAGTAGAGTAGATTGAAGCG
1 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGAAGATTAAAGAT
* * * * ** *
22592289 ACAAATCCTAT-ACCTCTAAAGTTGTAGT-GAGTCGAATTAAATCTACTAT
1 ACAAATCTTATCTCCT-TGAAGTTGCAGTGGAGAAG-ATT-AA---A-GAT
* * * * *
22592338 AGCAAGT-TCTATTTCCCTGAAGTTGCAGTGGAATAGACTAAAGTTACAAGCT
1 A-CAAATCT-TATCTCCTTGAAGTTGCAGTGG---AGA--AGA-TTA-AAGAT
* *
22592390 ACTAATCTTATCTCCTTAAAGTTGCAGTGGA-ATAGATTAAAGCTACGAGTT
1 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGA-AGATT-AA---A-GA--T
* * * * * *
22592441 ATAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGCTTGAAGTT
1 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGAAGATTAAAGAT
* * * * * * *
22592485 ACAAATCTTATCTCCCTAAAGTGGTAGTGGAGTAGATTGAAGGT
1 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGAAGATTAAAGAT
** * * * * *
22592529 AGTGAATCTTATCTCCCTGAAGTTGCAATAGAGTAGATTGAAGCA-
1 A-CAAATCTTATCTCCTTGAAGTTGCAGTGGAGAAGATTAAAG-AT
* * ** *
22592574 ACAAATCCTATACTTC-TGAAGTTGCAGTGG-GTCGGATTAAATTTATTAT
1 ACAAATCTTAT-CTCCTTGAAGTTGCAGTGGAG-AAGATT-AA---A-GAT
* * * * * * *
22592623 AGCAAGTCCTATTTCCCTGAAGTTGTAGTGGA-ACAGGCTAAAGCTACAAGCT
1 A-CAAATCTTATCTCCTTGAAGTTGCAGTGGAGA-A-G----A-TTA-AAGAT
* * *
22592675 ACTAATCTTATCTCCCTGAAGTTGCAGTGGA-ACATATTAAAGCTATGTGTT
1 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGA-AGATTAAAG--A-----T
* * * * * * *
22592726 ATAAATCTTATCCCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTT
1 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGAAGATTAAAGAT
* * * *
22592770 ACAAATCTTATCTCCCTAAAGTGGCAGTGGAGCAA-ATTAAAGGT
1 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAG-AAGATTAAAGAT
** * * * * *
22592814 AGTGAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCT
1 A-CAAATCTTATCTCCTTGAAGTTGCAGTGGAGAAGATTAAAGAT
*** * * **
22592859 ACATGCCTTATCT-CTCTGAAGTTGCAGTGGAGTAGATTGAAGCG
1 ACAAATCTTATCTCCT-TGAAGTTGCAGTGGAGAAGATTAAAGAT
* * *
22592903 ACAAACCCTAT-ACCTCTGAAGTTGCAGTGG
1 ACAAATCTTATCTCCT-TGAAGTTGCAGTGG
22592933 GTCGGATTAA
Statistics
Matches: 1058, Mismatches: 244, Indels: 230
0.69 0.16 0.15
Matches are distributed among these distances:
42 2 0.00
43 19 0.02
44 508 0.48
45 228 0.22
46 11 0.01
47 3 0.00
48 5 0.00
49 7 0.01
50 45 0.04
51 209 0.20
52 8 0.01
53 2 0.00
54 2 0.00
55 4 0.00
56 5 0.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Consensus pattern (44 bp):
ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGAAGATTAAAGAT
Found at i:22591995 original size:139 final size:139
Alignment explanation
Indices: 22591836--22592089 Score: 323
Period size: 139 Copynumber: 1.8 Consensus size: 139
22591826 TATAAATCTT
* * * *
22591836 ATCTCCCTGAAGCTGCAGTGGAACAGGTTGAAGATGCAAATCTTATTTCCCTAAAGCTACAATGG
1 ATCTCCCTGAAGCTGCAGTGGAACAAGTTAAAGATACAAATCGTATTTCCCTAAAGCTACAATGG
* *
22591901 AATAGACTAAAGCTACAAGTCACAAAT-TCTATGC-CCCTGAAGTGGCAATGGAAAAAATTAAAT
66 AACAGACTAAAGCTACAAGTCACAAGTCT-TAT-CTCCCTGAAGTGGCAATGGAAAAAATTAAAT
22591964 TCACAAATTTC
129 TCACAAATTTC
* * * * * * **
22591975 ATCTTCCTGAAGTTGCAGTGGAGCAAGTTAAAGCTACAAATCGTATTTCCTTAAAGTTACGGTGG
1 ATCTCCCTGAAGCTGCAGTGGAACAAGTTAAAGATACAAATCGTATTTCCCTAAAGCTACAATGG
* * *
22592040 AACAGATTAAAGCTACAAGTTACAAGTCTTATCTCCCTGAAGTTGCAATG
66 AACAGACTAAAGCTACAAGTCACAAGTCTTATCTCCCTGAAGTGGCAATG
22592090 AAGCAGATTG
Statistics
Matches: 96, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
138 1 0.01
139 94 0.98
140 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (139 bp):
ATCTCCCTGAAGCTGCAGTGGAACAAGTTAAAGATACAAATCGTATTTCCCTAAAGCTACAATGG
AACAGACTAAAGCTACAAGTCACAAGTCTTATCTCCCTGAAGTGGCAATGGAAAAAATTAAATTC
ACAAATTTC
Found at i:22592186 original size:51 final size:51
Alignment explanation
Indices: 22592009--22592245 Score: 160
Period size: 51 Copynumber: 4.9 Consensus size: 51
22591999 AAGTTAAAGC
* * *
22592009 TACAAATCGTATTTCCTTAAAGTTACGGTGGAACAGATTAAAGCTACAAGT
1 TACAAATCTTATTTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGT
* * * * * * *
22592060 TACAAGTCTTATCTCCCTGAAGTTGCAAT-GAAGCAGATTGAAG--A-TAG-
1 TACAAATCTTATTTCCCTAAAGTTACAGTGGAA-CAGATTAAAGCTACAAGT
* ** *
22592107 --CAAATCTCATTTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTACGAGT
1 TACAAATCTTATTTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGT
* * * *
22592156 TATAAATCTTATATCCCTAAAGTTACAGTGGAGCATATT---G----AAGT
1 TACAAATCTTATTTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGT
* * ** *
22592200 TACAAATCTTATCTCCCTGAAGTGGCAGTGGAACAGATTGAAGCTA
1 TACAAATCTTATTTCCCTAAAGTTACAGTGGAACAGATTAAAGCTA
22592246 TAGACCTTAT
Statistics
Matches: 139, Mismatches: 33, Indels: 29
0.69 0.16 0.14
Matches are distributed among these distances:
44 35 0.25
45 30 0.22
46 3 0.02
47 2 0.01
48 5 0.04
49 1 0.01
50 3 0.02
51 60 0.43
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (51 bp):
TACAAATCTTATTTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGT
Found at i:22592448 original size:51 final size:51
Alignment explanation
Indices: 22592351--22592471 Score: 163
Period size: 51 Copynumber: 2.4 Consensus size: 51
22592341 AAGTTCTATT
* *
22592351 TCCCTGAAGTTGCAGTGGAATAGACTAAAGTTACAAGCTACTAATCTTATC
1 TCCCTAAAGTTGCAGTGGAATAGACTAAAGCTACAAGCTACTAATCTTATC
* * * *
22592402 TCCTTAAAGTTGCAGTGGAATAGATTAAAGCTACGAGTTA-TAAATCTTATC
1 TCCCTAAAGTTGCAGTGGAATAGACTAAAGCTACAAGCTACT-AATCTTATC
*
22592453 TCCCTGAAGTTGCAGTGGA
1 TCCCTAAAGTTGCAGTGGA
22592472 GCAGCTTGAA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
50 1 0.02
51 60 0.98
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (51 bp):
TCCCTAAAGTTGCAGTGGAATAGACTAAAGCTACAAGCTACTAATCTTATC
Found at i:22592570 original size:89 final size:89
Alignment explanation
Indices: 22591472--22592889 Score: 717
Period size: 89 Copynumber: 15.3 Consensus size: 89
22591462 GGTCACCGTG
** * * * **
22591472 ACAAATCTTATCTCTTTGAAGTTCCAGTGGAAAAGATTAAAG-TCA-CAAAT-TTCATCTCATTG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCT-AGTAAATCTT-ATCTCCCTG
* * * * * * *
22591534 AAATGGCAGTGGAGTAGACTAAAGAT
64 AAGTTGCAGTAGAGCAGATTGAAGCT
* * * * * **
22591560 ACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCTATGAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAGTAAATCTTATCTCCCTGAA
*
22591625 GTTGCAGTAGAGCAGATTAAAGCT
66 GTTGCAGTAGAGCAGATTGAAGCT
* * * * * * *
22591649 ATAAATCTTATCTCCTTGAAGTTGCAGTGGAAAAGATTGAAGATAGCAAATCTTATCTCTCTGAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAGTAAATCTTATCTCCCTGAA
* *
22591714 GTTGCAGTAGAGTAGATTAAAGCT
66 GTTGCAGTAGAGCAGATTGAAGCT
* * * * * * * *
22591738 ATAAATCTTATCTCCCTAAAGTTGCAGTGGAAAATATTAAAGATAGCAAATCTTATCTCTCTAAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAGTAAATCTTATCTCCCTGAA
* * *
22591803 GTTGCAGTAGAGCAAATTAAAGAT
66 GTTGCAGTAGAGCAGATTGAAGCT
* * * * * * * *
22591827 ATAAATCTTATCTCCCTGAAGCTGCAGTGGAACAGGTTGAAGAT-GCAAATCTTATTTCCCTAAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAGTAAATCTTATCTCCCTGAA
* * * * ** * *
22591891 GCTACAATGGAATAGACTAAAGCT
66 GTTGCAGTAGAGCAGATTGAAGCT
* * * * * * *
22591915 ACAAGTCACAAATTCTATGC-CCCTGAAGTGGCAATGGAAAAAATTAAA-TTCA-CAAAT-TTCA
1 ACAAAT--C----T-TAT-CTCCCTGAAGTTGCAGTGGAACAGATTAAAGCT-AGTAAATCTT-A
* * *
22591976 TCTTCCTGAAGTTGCAGTGGAGCA-AGTTAAAGCT
56 TCTCCCTGAAGTTGCAGTAGAGCAGA-TTGAAGCT
* * * * * *
22592010 ACAAATCGTATTTCCTTAAAGTTACGGTGGAACAGATTAAAGCTACAAGTTACAAGTCTTATCTC
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCT---AG-TA-AA-TCTTATCTC
* *
22592075 CCTGAAGTTGCAAT-GAAGCAGATTGAAGAT
60 CCTGAAGTTGCAGTAG-AGCAGATTGAAGCT
* * * * *
22592105 AGCAAATCTCATTTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTACGAGTTATAAATCTTATAT
1 A-CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCT---AG---TAAATCTTATCT
* * * * *
22592170 CCCTAAAGTTACAGTGGAGCATATTGAAGTT
59 CCCTGAAGTTGCAGTAGAGCAGATTGAAGCT
* * * * *
22592201 ACAAATCTTATCTCCCTGAAGTGGCAGTGGAACAGATTGAAGCTA-TAGACCTTATTTCCCTGAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAGTAAATCTTATCTCCCTGAA
* *
22592265 GTTGCAGTAGAGTAGATTGAAGCG
66 GTTGCAGTAGAGCAGATTGAAGCT
* * * * * * *
22592289 ACAAATCCTATAC-CTCTAAAGTTGTAGT-GAGTC-GAATTAAATCTACTATAGCAAGT-TCTAT
1 ACAAATCTTAT-CTCCCTGAAGTTGCAGTGGA-ACAG-ATTAAAGCTA--GTA--AA-TCT-TAT
* * * *
22592350 TTCCCTGAAGTTGCAGTGGAATAGACTAAAGTTACAAGCT
57 CTCCCTGAAGTTGCAGT---AGAG-C-AGA-TT-GAAGCT
* * * *
22592390 ACTAATCTTATCTCCTTAAAGTTGCAGTGGAATAGATTAAAGCTACGAGTTATAAATCTTATCTC
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCT---AG---TAAATCTTATCTC
* * *
22592455 CCTGAAGTTGCAGTGGAGCAGCTTGAAGTT
60 CCTGAAGTTGCAGTAGAGCAGATTGAAGCT
* * * ** * * *
22592485 ACAAATCTTATCTCCCTAAAGTGGTAGTGGAGTAGATTGAAGGTAGTGAATCTTATCTCCCTGAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAGTAAATCTTATCTCCCTGAA
* * *
22592550 GTTGCAATAGAGTAGATTGAAGCA
66 GTTGCAGTAGAGCAGATTGAAGCT
* * ** * ** * * *
22592574 ACAAATCCTATACT-TCTGAAGTTGCAGTGGGTCGGATTAAATTTATTATAGCAAGTCCTATTTC
1 ACAAATCTTAT-CTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTA--GTA--AA-TCTTATCTC
* * * **
22592638 CCTGAAGTTGTAGTGGAACAGGCTAAAGCTACAAGCT
60 CCTGAAGTTGCAGT---AGA-GC---AGATTGAAGCT
* * *
22592675 ACTAATCTTATCTCCCTGAAGTTGCAGTGGAACATATTAAAGCTATGTGTTATAAATCTTATCCC
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTA---G---TAAATCTTATCTC
* * *
22592740 CCTGAAGTTGCAGTGGAGCAGGTTGAAGTT
60 CCTGAAGTTGCAGTAGAGCAGATTGAAGCT
* * * * * * *
22592770 ACAAATCTTATCTCCCTAAAGTGGCAGTGGAGCAAATTAAAGGTAGTGAATCTTATTTCCCTGAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAGTAAATCTTATCTCCCTGAA
*
22592835 GTTGCAGTGGAGCAGATTGAAGCT
66 GTTGCAGTAGAGCAGATTGAAGCT
*** *
22592859 ACATGCCTTATCTCTCTGAAGTTGCAGTGGA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGA
22592890 GTAGATTGAA
Statistics
Matches: 1034, Mismatches: 221, Indels: 149
0.74 0.16 0.11
Matches are distributed among these distances:
87 3 0.00
88 159 0.15
89 365 0.35
90 5 0.00
91 4 0.00
92 4 0.00
93 6 0.01
94 47 0.05
95 211 0.20
96 79 0.08
97 9 0.01
98 6 0.01
99 5 0.00
100 5 0.00
101 73 0.07
102 43 0.04
103 5 0.00
104 1 0.00
105 4 0.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Consensus pattern (89 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAGTAAATCTTATCTCCCTGAA
GTTGCAGTAGAGCAGATTGAAGCT
Found at i:22592673 original size:285 final size:285
Alignment explanation
Indices: 22592109--22592888 Score: 1111
Period size: 285 Copynumber: 2.7 Consensus size: 285
22592099 GAAGATAGCA
* * * *
22592109 AATCTCATTTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTACGAGTTATAAATCTTATATCCCT
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTAAAGCTACGAGTTATAAATCTTATCTCCCT
* * * * *
22592174 AAAGTTACAGTGGAGCATATTGAAGTTACAAATCTTATCTCCCTGAAGTGGCAGTGGAACAGATT
66 GAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTAAAGTGGCAGTGGAGCAGATT
* * *
22592239 GAAGCTA-T-AGACCTTATTTCCCTGAAGTTGCAGTAGAGTAGATTGAAGCGACAAATCCTATAC
131 GAAGGTAGTGA-ATCTTATTTCCCTGAAGTTGCAGTAGAGTAGATTGAAGCAACAAATCCTATAC
* * * * *
22592302 CTCTAAAGTTGTAGTGAGTCGAATTAAATCTACTATAGCAAGTTCTATTTCCCTGAAGTTGCAGT
195 TTCTGAAGTTGCAGTGGGTCGAATTAAATCTACTATAGCAAGTCCTATTTCCCTGAAGTTGCAGT
* *
22592367 GGAATAGACTAAAGTTACAAGCTACT
260 GGAACAGACTAAAGCTACAAGCTACT
* *
22592393 AATCTTATCTCCTTAAAGTTGCAGTGGAATAGATTAAAGCTACGAGTTATAAATCTTATCTCCCT
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTAAAGCTACGAGTTATAAATCTTATCTCCCT
* * *
22592458 GAAGTTGCAGTGGAGCAGCTTGAAGTTACAAATCTTATCTCCCTAAAGTGGTAGTGGAGTAGATT
66 GAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTAAAGTGGCAGTGGAGCAGATT
* *
22592523 GAAGGTAGTGAATCTTATCTCCCTGAAGTTGCAATAGAGTAGATTGAAGCAACAAATCCTATACT
131 GAAGGTAGTGAATCTTATTTCCCTGAAGTTGCAGTAGAGTAGATTGAAGCAACAAATCCTATACT
* * * *
22592588 TCTGAAGTTGCAGTGGGTCGGATTAAATTTATTATAGCAAGTCCTATTTCCCTGAAGTTGTAGTG
196 TCTGAAGTTGCAGTGGGTCGAATTAAATCTACTATAGCAAGTCCTATTTCCCTGAAGTTGCAGTG
*
22592653 GAACAGGCTAAAGCTACAAGCTACT
261 GAACAGACTAAAGCTACAAGCTACT
* * * * *
22592678 AATCTTATCTCCCTGAAGTTGCAGTGGAACATATTAAAGCTATGTGTTATAAATCTTATCCCCCT
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTAAAGCTACGAGTTATAAATCTTATCTCCCT
* *
22592743 GAAGTTGCAGTGGAGCAGGTTGAAGTTACAAATCTTATCTCCCTAAAGTGGCAGTGGAGCAAATT
66 GAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTAAAGTGGCAGTGGAGCAGATT
* * * *
22592808 AAAGGTAGTGAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC--ATGCCT-TAT
131 GAAGGTAGTGAATCTTATTTCCCTGAAGTTGCAGTAGAGTAGATTGAAGCAACAAAT-CCTATA-
22592870 CTCTCTGAAGTTGCAGTGG
194 CT-TCTGAAGTTGCAGTGG
22592889 AGTAGATTGA
Statistics
Matches: 443, Mismatches: 48, Indels: 9
0.89 0.10 0.02
Matches are distributed among these distances:
283 4 0.01
284 127 0.29
285 311 0.70
286 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (285 bp):
AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTAAAGCTACGAGTTATAAATCTTATCTCCCT
GAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTAAAGTGGCAGTGGAGCAGATT
GAAGGTAGTGAATCTTATTTCCCTGAAGTTGCAGTAGAGTAGATTGAAGCAACAAATCCTATACT
TCTGAAGTTGCAGTGGGTCGAATTAAATCTACTATAGCAAGTCCTATTTCCCTGAAGTTGCAGTG
GAACAGACTAAAGCTACAAGCTACT
Found at i:22592697 original size:51 final size:51
Alignment explanation
Indices: 22592636--22592761 Score: 146
Period size: 51 Copynumber: 2.5 Consensus size: 51
22592626 AAGTCCTATT
*
22592636 TCCCTGAAGTTGTAGTGGAACAGGCTAAAGCTACAAGCTACT-AATCTTATC
1 TCCCTGAAGTTGCAGTGGAACAGGCTAAAGCTACAAGCTA-TAAATCTTATC
*** *** *
22592687 TCCCTGAAGTTGCAGTGGAACATATTAAAGCTATGTGTTATAAATCTTATC
1 TCCCTGAAGTTGCAGTGGAACAGGCTAAAGCTACAAGCTATAAATCTTATC
* *
22592738 CCCCTGAAGTTGCAGTGGAGCAGG
1 TCCCTGAAGTTGCAGTGGAACAGG
22592762 TTGAAGTTAC
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
50 1 0.02
51 61 0.98
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (51 bp):
TCCCTGAAGTTGCAGTGGAACAGGCTAAAGCTACAAGCTATAAATCTTATC
Found at i:22592778 original size:329 final size:329
Alignment explanation
Indices: 22592437--22593034 Score: 869
Period size: 329 Copynumber: 1.8 Consensus size: 329
22592427 TAAAGCTACG
* * * ** * *
22592437 AGTTATAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGCTTGAAGTTA-CAAATCTTATCTCCC
1 AGTTACAAATCTTATCTCCCTAAAGTGGCAGTGGAGCAAATTAAAGGTAGCAAATCTTATCTCCC
* * * * *
22592501 TAAAGTGGTAGTGGAGTAGATTGAAGGTA-GTGAATCTTATCTCCCTGAAGTTGCAATAGAGTAG
66 TAAAGTGGCAGTGGAGCAGATTGAAGCTACATG--CCTTATCTCCCTGAAGTTGCAATAGAGTAG
* * * *
22592565 ATTGAAGCAACAAATCCTATACTTCTGAAGTTGCAGTGGGTCGGATTAAATTTATTATAGCAAGT
129 ATTGAAGCAACAAACCCTATACCTCTGAAGTTGCAGTGGGTCGGATTAAATCTACTATAGCAAGT
* * *
22592630 CCTATTTCCCTGAAGTTGTAGTGGAACAGGCTAAAGCTACAAGCTACTAATCTTATCTCCCTGAA
194 CCTATTCCCCTGAAGTTGTAGTGGAACAGACTAAAGCTACAAGCTACTAATCTTATCTCCCTAAA
22592695 GTTGC-AGTGGAACATATTAAAGCTATGTGTTATAAATCTTATCCCCCTGAAGTTGCAGTGGAGC
259 GTT-CTAGTGGAACATATTAAAGCTATGTGTTATAAATCTTATCCCCCTGAAGTTGCAGTGGAGC
22592759 AGGTTGA
323 AGGTTGA
** *
22592766 AGTTACAAATCTTATCTCCCTAAAGTGGCAGTGGAGCAAATTAAAGGTAGTGAATCTTATTTCCC
1 AGTTACAAATCTTATCTCCCTAAAGTGGCAGTGGAGCAAATTAAAGGTAGCAAATCTTATCTCCC
* * * * *
22592831 TGAAGTTGCAGTGGAGCAGATTGAAGCTACATGCCTTATCTCTCTGAAGTTGCAGTGGAGTAGAT
66 TAAAGTGGCAGTGGAGCAGATTGAAGCTACATGCCTTATCTCCCTGAAGTTGCAATAGAGTAGAT
*
22592896 TGAAGCGACAAACCCTATACCTCTGAAGTTGCAGTGGGTCGGATTAAATCTACTATAGCAAGTCC
131 TGAAGCAACAAACCCTATACCTCTGAAGTTGCAGTGGGTCGGATTAAATCTACTATAGCAAGTCC
* * *
22592961 TATTCCCCTGAAGTTGTAGTGGAACAGACTAAAGCTGCAAGCTACTAATCTTGTTTCCCTAAAGT
196 TATTCCCCTGAAGTTGTAGTGGAACAGACTAAAGCTACAAGCTACTAATCTTATCTCCCTAAAGT
22593026 TCTAGTGGA
261 TCTAGTGGA
22593035 GTAGATTGAA
Statistics
Matches: 235, Mismatches: 31, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
328 1 0.00
329 196 0.83
330 36 0.15
331 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (329 bp):
AGTTACAAATCTTATCTCCCTAAAGTGGCAGTGGAGCAAATTAAAGGTAGCAAATCTTATCTCCC
TAAAGTGGCAGTGGAGCAGATTGAAGCTACATGCCTTATCTCCCTGAAGTTGCAATAGAGTAGAT
TGAAGCAACAAACCCTATACCTCTGAAGTTGCAGTGGGTCGGATTAAATCTACTATAGCAAGTCC
TATTCCCCTGAAGTTGTAGTGGAACAGACTAAAGCTACAAGCTACTAATCTTATCTCCCTAAAGT
TCTAGTGGAACATATTAAAGCTATGTGTTATAAATCTTATCCCCCTGAAGTTGCAGTGGAGCAGG
TTGA
Found at i:22600977 original size:20 final size:19
Alignment explanation
Indices: 22600952--22601027 Score: 68
Period size: 19 Copynumber: 4.0 Consensus size: 19
22600942 TAACTATTAG
22600952 AAATTATTAAAATATTATAA
1 AAATTATTAAAAT-TTATAA
* **
22600972 AAATTA-TGAACCTTATAGA
1 AAATTATTAAAATTTATA-A
*
22600991 AAAAT-TTAAAATTT-TAA
1 AAATTATTAAAATTTATAA
22601008 AAATTATTAGAAATTTATAA
1 AAATTATTA-AAATTTATAA
22601028 TATATAGAAT
Statistics
Matches: 43, Mismatches: 8, Indels: 10
0.70 0.13 0.16
Matches are distributed among these distances:
17 5 0.12
18 10 0.23
19 19 0.44
20 9 0.21
ACGTcount: A:0.55, C:0.03, G:0.04, T:0.38
Consensus pattern (19 bp):
AAATTATTAAAATTTATAA
Found at i:22601108 original size:24 final size:24
Alignment explanation
Indices: 22601071--22601118 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
22601061 ATTACTTATC
*
22601071 ATTTTATAAAATTTTAATAATTTT
1 ATTTTATAAAATTTCAATAATTTT
* *
22601095 ATTTTGTAAGATTTCAATAATTTT
1 ATTTTATAAAATTTCAATAATTTT
22601119 TATTAATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (24 bp):
ATTTTATAAAATTTCAATAATTTT
Found at i:22601185 original size:29 final size:28
Alignment explanation
Indices: 22601147--22601212 Score: 80
Period size: 28 Copynumber: 2.3 Consensus size: 28
22601137 ACAATTTTAA
* *
22601147 TATAATTTTCTATAAATTT-TTTATAGTTT
1 TATAAATTTCTAT-AATTTCTCTA-AGTTT
*
22601176 TATAAATTTCTATAATTTCTCTAATTTT
1 TATAAATTTCTATAATTTCTCTAAGTTT
22601204 TATAAATTT
1 TATAAATTT
22601213 TATGCTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 18 0.55
29 15 0.45
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (28 bp):
TATAAATTTCTATAATTTCTCTAAGTTT
Found at i:22601189 original size:10 final size:10
Alignment explanation
Indices: 22601147--22601212 Score: 50
Period size: 10 Copynumber: 6.9 Consensus size: 10
22601137 ACAATTTTAA
*
22601147 TATAATTTTC
1 TATAAATTTC
22601157 TATAAATTT-
1 TATAAATTTC
* *
22601166 TTTATAGTTT-
1 TATA-AATTTC
22601176 TATAAATTTC
1 TATAAATTTC
22601186 TAT-AATTTC
1 TATAAATTTC
* *
22601195 TCT-AATTTT
1 TATAAATTTC
22601204 TATAAATTT
1 TATAAATTT
22601213 TATGCTAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
9 22 0.49
10 23 0.51
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (10 bp):
TATAAATTTC
Found at i:22601213 original size:10 final size:10
Alignment explanation
Indices: 22601139--22601213 Score: 57
Period size: 9 Copynumber: 7.6 Consensus size: 10
22601129 TTATTTTAAC
*
22601139 AATTTTAATA
1 AATTTTTATA
22601149 TAATTTTCTATA
1 -AATTTT-TATA
22601161 AATTTTT-TA
1 AATTTTTATA
* *
22601170 TAGTTTTATA
1 AATTTTTATA
*
22601180 AATTTCTAT-
1 AATTTTTATA
* *
22601189 AATTTCTCT-
1 AATTTTTATA
22601198 AATTTTTATA
1 AATTTTTATA
22601208 AATTTT
1 AATTTT
22601214 ATGCTAAAAA
Statistics
Matches: 52, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
9 22 0.42
10 15 0.29
11 12 0.23
12 3 0.06
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.59
Consensus pattern (10 bp):
AATTTTTATA
Found at i:22604245 original size:15 final size:16
Alignment explanation
Indices: 22604216--22604245 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22604206 TAAACATGTT
22604216 TTAACACATTATCAAA
1 TTAACACATTATCAAA
22604232 TTAACACA-TATCAA
1 TTAACACATTATCAA
22604246 CAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:22606369 original size:5 final size:5
Alignment explanation
Indices: 22606361--22606392 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
22606351 AACAAAACAT
*
22606361 TTTAG TTTAA TTTAA TTTAA TTTAA TTTAA TT
1 TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TT
22606393 ATCAAATTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (5 bp):
TTTAA
Found at i:22613453 original size:16 final size:16
Alignment explanation
Indices: 22613432--22613463 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
22613422 TGTTGTTTTA
22613432 ATATAAATGAATCAAT
1 ATATAAATGAATCAAT
*
22613448 ATATAAATGTATCAAT
1 ATATAAATGAATCAAT
22613464 GCTATGATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.34
Consensus pattern (16 bp):
ATATAAATGAATCAAT
Found at i:22614660 original size:24 final size:24
Alignment explanation
Indices: 22614628--22614673 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
22614618 AATTTTGGGT
22614628 TCACACGGCCTGAG-ACACGAGCTA
1 TCACACGGCCTG-GCACACGAGCTA
22614652 TCACACGGCCTGGCACACGAGC
1 TCACACGGCCTGGCACACGAGC
22614674 ATGTGTGGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.37, G:0.26, T:0.11
Consensus pattern (24 bp):
TCACACGGCCTGGCACACGAGCTA
Found at i:22615729 original size:16 final size:15
Alignment explanation
Indices: 22615693--22615735 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 15
22615683 AGAAATGAAT
22615693 AATAAAAATAAAAGA
1 AATAAAAATAAAAGA
*
22615708 AATAAAGAATAAAGGA
1 AATAAA-AATAAAAGA
*
22615724 ATTAAAAA-AAAA
1 AATAAAAATAAAA
22615736 TAGACCCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 3 0.12
15 8 0.33
16 13 0.54
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.14
Consensus pattern (15 bp):
AATAAAAATAAAAGA
Found at i:22616885 original size:21 final size:20
Alignment explanation
Indices: 22616856--22616905 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
22616846 TTTAAAATAT
* *
22616856 AATATTAATTTAATATATTGA
1 AATAATAATTT-ATATATTAA
*
22616877 AATAATAATTTATATTTTAA
1 AATAATAATTTATATATTAA
22616897 AATATATAA
1 AATA-ATAA
22616906 GATTAATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 11 0.44
21 14 0.56
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (20 bp):
AATAATAATTTATATATTAA
Found at i:22619666 original size:3 final size:3
Alignment explanation
Indices: 22619660--22619702 Score: 61
Period size: 3 Copynumber: 14.3 Consensus size: 3
22619650 CATCATCATC
*
22619660 ATT ATT ATT ATT ATT ATT ATT -TCC ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT A
22619703 AATTGTTTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
2 1 0.03
3 34 0.94
4 1 0.03
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:22624000 original size:17 final size:18
Alignment explanation
Indices: 22623978--22624011 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
22623968 CAACCGTGAC
22623978 AAACGCGA-CGCGACCGA
1 AAACGCGACCGCGACCGA
22623995 AAACGCGACCGCGACCG
1 AAACGCGACCGCGACCG
22624012 CAATTTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.32, C:0.38, G:0.29, T:0.00
Consensus pattern (18 bp):
AAACGCGACCGCGACCGA
Found at i:22625467 original size:118 final size:118
Alignment explanation
Indices: 22625259--22625495 Score: 474
Period size: 118 Copynumber: 2.0 Consensus size: 118
22625249 TCTTCTGTTA
22625259 ACTCTGGGGCTGATCTTTTCCCCTTGCTTCTAAACTTGTCCTTGAAATACTGAAATGTCTTCATT
1 ACTCTGGGGCTGATCTTTTCCCCTTGCTTCTAAACTTGTCCTTGAAATACTGAAATGTCTTCATT
22625324 GCAGGATATTTAAAGAGCTAGAAGAAACGCAGATCTTCTCCCACTCGAAAAGT
66 GCAGGATATTTAAAGAGCTAGAAGAAACGCAGATCTTCTCCCACTCGAAAAGT
22625377 ACTCTGGGGCTGATCTTTTCCCCTTGCTTCTAAACTTGTCCTTGAAATACTGAAATGTCTTCATT
1 ACTCTGGGGCTGATCTTTTCCCCTTGCTTCTAAACTTGTCCTTGAAATACTGAAATGTCTTCATT
22625442 GCAGGATATTTAAAGAGCTAGAAGAAACGCAGATCTTCTCCCACTCGAAAAGT
66 GCAGGATATTTAAAGAGCTAGAAGAAACGCAGATCTTCTCCCACTCGAAAAGT
22625495 A
1 A
22625496 AACAAAAATA
Statistics
Matches: 119, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
118 119 1.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (118 bp):
ACTCTGGGGCTGATCTTTTCCCCTTGCTTCTAAACTTGTCCTTGAAATACTGAAATGTCTTCATT
GCAGGATATTTAAAGAGCTAGAAGAAACGCAGATCTTCTCCCACTCGAAAAGT
Found at i:22627470 original size:24 final size:24
Alignment explanation
Indices: 22627436--22627515 Score: 90
Period size: 24 Copynumber: 3.4 Consensus size: 24
22627426 GAACGATTCA
* *
22627436 TTTAGTATTTTAGGGACATGTTTG
1 TTTAGTGTTTTAGGAACATGTTTG
22627460 TTTAGTGTTTTAGGAACATGTTTG
1 TTTAGTGTTTTAGGAACATGTTTG
* * ** *
22627484 TTGAGTG-TTCACAAATATGTTTG
1 TTTAGTGTTTTAGGAACATGTTTG
22627507 TTTAGTGTT
1 TTTAGTGTT
22627516 CCTGAACAGT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
23 18 0.38
24 29 0.62
ACGTcount: A:0.21, C:0.05, G:0.24, T:0.50
Consensus pattern (24 bp):
TTTAGTGTTTTAGGAACATGTTTG
Found at i:22629213 original size:5 final size:5
Alignment explanation
Indices: 22629207--22629240 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
22629197 CACTGTTTTC
* *
22629207 CTTTC CTTTG CTTTG CTTTG CTTTG TTTTG CTTT
1 CTTTG CTTTG CTTTG CTTTG CTTTG CTTTG CTTT
22629241 TGTCATTCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.00, C:0.21, G:0.15, T:0.65
Consensus pattern (5 bp):
CTTTG
Found at i:22629572 original size:19 final size:19
Alignment explanation
Indices: 22629550--22629587 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
22629540 TCATCATATA
22629550 TTTATCACATATAAAGAAG
1 TTTATCACATATAAAGAAG
22629569 TTTATCACATATAAAGAAG
1 TTTATCACATATAAAGAAG
22629588 CTATTGTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.32
Consensus pattern (19 bp):
TTTATCACATATAAAGAAG
Found at i:22632949 original size:44 final size:44
Alignment explanation
Indices: 22632886--22632973 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
22632876 ACAGAATCAT
22632886 TTACCATTTTATTTGTTTTTTCTTTTGTTTCATTGCATGAACCG
1 TTACCATTTTATTTGTTTTTTCTTTTGTTTCATTGCATGAACCG
22632930 TTACCATTTTATTTGTTTTTTCTTTTGTTTCATTGCATGAACCG
1 TTACCATTTTATTTGTTTTTTCTTTTGTTTCATTGCATGAACCG
22632974 GTTAAAACCA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.16, C:0.16, G:0.11, T:0.57
Consensus pattern (44 bp):
TTACCATTTTATTTGTTTTTTCTTTTGTTTCATTGCATGAACCG
Found at i:22640186 original size:16 final size:16
Alignment explanation
Indices: 22640148--22640189 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
22640138 AAAAGAGAAC
22640148 AAAATAATA-GAAAAT
1 AAAATAATATGAAAAT
22640163 AAATATAATATGAAAAT
1 AAA-ATAATATGAAAAT
*
22640180 GAAATAATAT
1 AAAATAATAT
22640190 ATAGATGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 3 0.12
16 13 0.54
17 8 0.33
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (16 bp):
AAAATAATATGAAAAT
Found at i:22640792 original size:23 final size:23
Alignment explanation
Indices: 22640766--22640812 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
22640756 TGTGAATAGC
**
22640766 TTTTTTAACCTTTTATGAACTTT
1 TTTTTTAAAATTTTATGAACTTT
*
22640789 TTTTTTAAAATTTTTTGAACTTT
1 TTTTTTAAAATTTTATGAACTTT
22640812 T
1 T
22640813 ATGAAGTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.23, C:0.09, G:0.04, T:0.64
Consensus pattern (23 bp):
TTTTTTAAAATTTTATGAACTTT
Found at i:22645752 original size:38 final size:38
Alignment explanation
Indices: 22645712--22645854 Score: 169
Period size: 38 Copynumber: 3.8 Consensus size: 38
22645702 TCAAATGAGG
*
22645712 TGTTATTCAGACTTAGTGCCTAGCAGGCTTAGTGTTGG
1 TGTTATTCAGACTTAGTGCCTAGCAGGCTTAGTGTTGA
* * * *
22645750 TGTTATTCAGGCTTAGTGCTTAGCAAGCTTAGTGTCGA
1 TGTTATTCAGACTTAGTGCCTAGCAGGCTTAGTGTTGA
* * * * *
22645788 TGTTATTCAGGCTTAGTGCCTAGTAGGCTCAATGCTGA
1 TGTTATTCAGACTTAGTGCCTAGCAGGCTTAGTGTTGA
* * *
22645826 TGTTAATCAGACTTAATGCCTAGTAGGCT
1 TGTTATTCAGACTTAGTGCCTAGCAGGCT
22645855 GTGAGCCGGT
Statistics
Matches: 90, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 90 1.00
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.36
Consensus pattern (38 bp):
TGTTATTCAGACTTAGTGCCTAGCAGGCTTAGTGTTGA
Found at i:22645804 original size:22 final size:21
Alignment explanation
Indices: 22645735--22645805 Score: 62
Period size: 22 Copynumber: 3.5 Consensus size: 21
22645725 TAGTGCCTAG
*
22645735 CAGGCTTAGTGTTGGTGTTATT
1 CAGGCTTAGTG-TCGTGTTATT
*
22645757 CAGGCTTAGTG-C---TTA-G
1 CAGGCTTAGTGTCGTGTTATT
*
22645773 CAAGCTTAGTGTCGATGTTATT
1 CAGGCTTAGTGTCG-TGTTATT
22645795 CAGGCTTAGTG
1 CAGGCTTAGTG
22645806 CCTAGTAGGC
Statistics
Matches: 38, Mismatches: 5, Indels: 12
0.69 0.09 0.22
Matches are distributed among these distances:
16 10 0.26
17 4 0.11
21 3 0.08
22 21 0.55
ACGTcount: A:0.18, C:0.14, G:0.30, T:0.38
Consensus pattern (21 bp):
CAGGCTTAGTGTCGTGTTATT
Found at i:22648398 original size:43 final size:43
Alignment explanation
Indices: 22648313--22648468 Score: 176
Period size: 43 Copynumber: 3.6 Consensus size: 43
22648303 TAAGACTTTA
* * *
22648313 TCTGGGATA-TGGCATCGATATATGTGATTACGTGTAATACCATG
1 TCTGGGACATTGGCATCG--ATATGTGATTTCGTGTAAGACCATG
* *
22648357 TCTGGGACATTGGCATCGCTATGTGATTTCGAGTAAGACCATG
1 TCTGGGACATTGGCATCGATATGTGATTTCGTGTAAGACCATG
*
22648400 TCTGGGACATTGGCATCGATATATGA-TTCGTGTAAGACCATAG
1 TCTGGGACATTGGCATCGATATGTGATTTCGTGTAAGACCAT-G
* *
22648443 -CTGGG-CTATTAGCATCAATATGTGAT
1 TCTGGGAC-ATTGGCATCGATATGTGAT
22648469 AACATATAAA
Statistics
Matches: 97, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
41 1 0.01
42 34 0.35
43 46 0.47
44 8 0.08
45 8 0.08
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (43 bp):
TCTGGGACATTGGCATCGATATGTGATTTCGTGTAAGACCATG
Found at i:22648458 original size:42 final size:42
Alignment explanation
Indices: 22648261--22648468 Score: 149
Period size: 44 Copynumber: 4.8 Consensus size: 42
22648251 GATTTCGTAT
* * *
22648261 AGACCATAGCTGGGCTA-TGGAATCAATATATGAGACTTTGTGTA
1 AGACCATAGCTGGGCTATTGGCATCGATATAT--GA-TTCGTGTA
** * *
22648305 AGACTTTATCTGGGATA-TGGCATCGATATATGTGATTACGTGTA
1 AGACCATAGCTGGGCTATTGGCATCGATATA--TGATT-CGTGTA
* * * *
22648349 ATACCAT-GTCTGGGAC-ATTGGCATCGCTATGTGATTTCGAGTA
1 AGACCATAG-CTGGG-CTATTGGCATCGATATATGA-TTCGTGTA
22648392 AGACCAT-GTCTGGGAC-ATTGGCATCGATATATGATTCGTGTA
1 AGACCATAG-CTGGG-CTATTGGCATCGATATATGATTCGTGTA
* * *
22648434 AGACCATAGCTGGGCTATTAGCATCAATATGTGAT
1 AGACCATAGCTGGGCTATTGGCATCGATATATGAT
22648469 AACATATAAA
Statistics
Matches: 133, Mismatches: 22, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
41 1 0.01
42 35 0.26
43 42 0.32
44 43 0.32
45 11 0.08
46 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (42 bp):
AGACCATAGCTGGGCTATTGGCATCGATATATGATTCGTGTA
Found at i:22653196 original size:34 final size:34
Alignment explanation
Indices: 22653137--22653292 Score: 224
Period size: 34 Copynumber: 4.6 Consensus size: 34
22653127 GTATACGGTT
* *
22653137 AACCATCCAACACACCAGAA-ACTCGTATGAGCCA
1 AACCAACCAACACACC-GAATGCTCGTATGAGCCA
* * * *
22653171 AACCAACCAATACATCAAATGCTCGTATAAGCCA
1 AACCAACCAACACACCGAATGCTCGTATGAGCCA
22653205 AACCAACCAACACACCGAATGCTCGTATGAGCCA
1 AACCAACCAACACACCGAATGCTCGTATGAGCCA
*
22653239 AACCAGCCAACACACCGAATGCTCGTATGAGCCA
1 AACCAACCAACACACCGAATGCTCGTATGAGCCA
*
22653273 AACCAACCAACACACTGAAT
1 AACCAACCAACACACCGAAT
22653293 AACACTATAA
Statistics
Matches: 108, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
33 2 0.02
34 106 0.98
ACGTcount: A:0.41, C:0.34, G:0.12, T:0.13
Consensus pattern (34 bp):
AACCAACCAACACACCGAATGCTCGTATGAGCCA
Found at i:22660099 original size:3 final size:3
Alignment explanation
Indices: 22660091--22660126 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
22660081 ATGTCTACCC
22660091 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
22660127 ATTTTAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:22663373 original size:50 final size:50
Alignment explanation
Indices: 22663221--22663412 Score: 287
Period size: 50 Copynumber: 3.8 Consensus size: 50
22663211 GATCATAACA
* * ** *
22663221 TGCCAAAGCCATGTCTCAGACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* *
22663272 TGCCCACGCCATGTCCCAGACATGGTCTTAC-GGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
22663321 TGCCAACACCATTTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
22663371 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
22663413 TTACCCAAAT
Statistics
Matches: 127, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
49 38 0.30
50 61 0.48
51 28 0.22
ACGTcount: A:0.21, C:0.32, G:0.22, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:22663787 original size:30 final size:30
Alignment explanation
Indices: 22663752--22663808 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
22663742 CTCGACTCTA
*
22663752 ACTTTTTCAAAATTACGA-TTTTGCCCCTAT
1 ACTTTTACAAAATTAC-ATTTTTGCCCCTAT
*
22663782 ACTTTTACATAATTACATTTTTGCCCC
1 ACTTTTACAAAATTACATTTTTGCCCC
22663809 AAGGCTCGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.26, C:0.25, G:0.05, T:0.44
Consensus pattern (30 bp):
ACTTTTACAAAATTACATTTTTGCCCCTAT
Found at i:22667093 original size:19 final size:19
Alignment explanation
Indices: 22667069--22667106 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
22667059 GAAGTTAGGC
22667069 CATGGACATTAAAGGTTAG
1 CATGGACATTAAAGGTTAG
*
22667088 CATGGACATTAGAGGTTAG
1 CATGGACATTAAAGGTTAG
22667107 GTAGACATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (19 bp):
CATGGACATTAAAGGTTAG
Found at i:22673714 original size:122 final size:122
Alignment explanation
Indices: 22673497--22673737 Score: 340
Period size: 122 Copynumber: 2.0 Consensus size: 122
22673487 CGTTCTATCA
** * * * * *
22673497 GTAGAACTCTGATGGTTTCATTTGGTATCAATAGAACCCATCAGAGTATTAGTAGAAGTGCAGGA
1 GTAGAACTCTGATGGTTTCAACTGGTATCAATAGAACCCAACAAAGTATCAGTAAAAGTACAGGA
* *
22673562 CAGGCTGGACTTTGGCTACTGTTTTGACTTGTTTCGGTAGAAGTCCTCAAGGTAGCG
66 CAGGCTGAACTTTGGCTACTGTTTTGACTTGTTTCGATAGAAGTCCTCAAGGTAGCG
* * *
22673619 GTAGAACTCT-AGTGGTTTCAACTGGTATCGATAGAATCCAACAAAGTATCGGTAAAAGTACAGG
1 GTAGAACTCTGA-TGGTTTCAACTGGTATCAATAGAACCCAACAAAGTATCAGTAAAAGTACAGG
* *
22673683 AGAGGCTGAACTTTGGCTACTTTTTTGACTTGTTTCGATAGAAGTCCTCAAGGTA
65 ACAGGCTGAACTTTGGCTACTGTTTTGACTTGTTTCGATAGAAGTCCTCAAGGTA
22673738 TCGATATAAC
Statistics
Matches: 104, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
121 1 0.01
122 103 0.99
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (122 bp):
GTAGAACTCTGATGGTTTCAACTGGTATCAATAGAACCCAACAAAGTATCAGTAAAAGTACAGGA
CAGGCTGAACTTTGGCTACTGTTTTGACTTGTTTCGATAGAAGTCCTCAAGGTAGCG
Found at i:22674239 original size:44 final size:44
Alignment explanation
Indices: 22674176--22674281 Score: 167
Period size: 44 Copynumber: 2.4 Consensus size: 44
22674166 GTTGCGGATT
* * *
22674176 ATTCACAGCTCTTATGAGTAGCATCGTGTAATGGTTAATGTCTG
1 ATTCATAGCTCGTGTGAGTAGCATCGTGTAATGGTTAATGTCTG
* *
22674220 ATTCATAGCTCGTGTGAGTAGCATCGTGTACTTGTTAATGTCTG
1 ATTCATAGCTCGTGTGAGTAGCATCGTGTAATGGTTAATGTCTG
22674264 ATTCATAGCTCGTGTGAG
1 ATTCATAGCTCGTGTGAG
22674282 CACTTTCATT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 57 1.00
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.37
Consensus pattern (44 bp):
ATTCATAGCTCGTGTGAGTAGCATCGTGTAATGGTTAATGTCTG
Found at i:22676419 original size:24 final size:24
Alignment explanation
Indices: 22676368--22676433 Score: 78
Period size: 24 Copynumber: 2.8 Consensus size: 24
22676358 TTGGGTTTTC
** * *
22676368 TTTTCTTTTTCTTTTTCTTTTTCT
1 TTTTCTTTTTCTTTTTAGTTTACG
*
22676392 TTTTCTTTTTCTTTTTAGTTTAGG
1 TTTTCTTTTTCTTTTTAGTTTACG
*
22676416 TTTTCTTTTTCCTTTTAG
1 TTTTCTTTTTCTTTTTAG
22676434 AGTAGATTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.05, C:0.14, G:0.06, T:0.76
Consensus pattern (24 bp):
TTTTCTTTTTCTTTTTAGTTTACG
Found at i:22676426 original size:6 final size:6
Alignment explanation
Indices: 22676363--22676407 Score: 83
Period size: 6 Copynumber: 7.7 Consensus size: 6
22676353 TAGGGTTGGG
22676363 TTTTC- TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTT
22676408 AGTTTAGGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
5 5 0.13
6 34 0.87
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTCT
Found at i:22676443 original size:24 final size:24
Alignment explanation
Indices: 22676392--22676443 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
22676382 TTCTTTTTCT
* ** *
22676392 TTTTCTTTTTCTTTTTAGTTTAGG
1 TTTTCTTTTTCCTTTTAGAGTAGA
22676416 TTTTCTTTTTCCTTTTAGAGTAGA
1 TTTTCTTTTTCCTTTTAGAGTAGA
22676440 TTTT
1 TTTT
22676444 ATTCTTGTAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.12, C:0.10, G:0.12, T:0.67
Consensus pattern (24 bp):
TTTTCTTTTTCCTTTTAGAGTAGA
Found at i:22682141 original size:21 final size:21
Alignment explanation
Indices: 22682116--22682161 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
22682106 TCTACCTCTT
* * *
22682116 CCTCCTCTTCATCCTCATCCT
1 CCTCCTCCTCATCATCATCAT
22682137 CCTCCTCCTCATCATCATCAT
1 CCTCCTCCTCATCATCATCAT
22682158 CCTC
1 CCTC
22682162 TACCCCATCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.13, C:0.52, G:0.00, T:0.35
Consensus pattern (21 bp):
CCTCCTCCTCATCATCATCAT
Found at i:22682538 original size:18 final size:18
Alignment explanation
Indices: 22682511--22682545 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22682501 ATCATCCTCA
*
22682511 TCCTCATCCTCTTCATCT
1 TCCTCATCCTCCTCATCT
*
22682529 TCCTCTTCCTCCTCATC
1 TCCTCATCCTCCTCATC
22682546 ATCCGATTCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.49, G:0.00, T:0.43
Consensus pattern (18 bp):
TCCTCATCCTCCTCATCT
Found at i:22687562 original size:34 final size:35
Alignment explanation
Indices: 22687524--22687590 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
22687514 TTAATTTTGA
**
22687524 AAAGTAATAA-TTATTATTCAATAGATACATTTAG
1 AAAGTAATAATTTACCATTCAATAGATACATTTAG
* *
22687558 AAAGTGATAATTTACCATTCAATGGATACATTT
1 AAAGTAATAATTTACCATTCAATAGATACATTT
22687591 TCATAAGACA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 9 0.32
35 19 0.68
ACGTcount: A:0.43, C:0.09, G:0.10, T:0.37
Consensus pattern (35 bp):
AAAGTAATAATTTACCATTCAATAGATACATTTAG
Found at i:22688701 original size:34 final size:35
Alignment explanation
Indices: 22688663--22688729 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
22688653 TTAATTTTGC
*
22688663 AAAGTAATAA-TTATCATTCAATAGATACATTTAG
1 AAAGTAATAATTTACCATTCAATAGATACATTTAG
* *
22688697 AAAGTGATAATTTACCATTCAATGGATACATTT
1 AAAGTAATAATTTACCATTCAATAGATACATTT
22688730 TCATAAGACA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 9 0.31
35 20 0.69
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.36
Consensus pattern (35 bp):
AAAGTAATAATTTACCATTCAATAGATACATTTAG
Found at i:22689839 original size:34 final size:35
Alignment explanation
Indices: 22689796--22689868 Score: 103
Period size: 35 Copynumber: 2.1 Consensus size: 35
22689786 CACTTATTTA
* *
22689796 ATTTTGAAAGTAATAA-TTATCATTCAATAGATAC
1 ATTTAGAAAGTAATAATTTACCATTCAATAGATAC
* *
22689830 ATTTAGAAAGTGATAATTTACCATTCAATGGATAC
1 ATTTAGAAAGTAATAATTTACCATTCAATAGATAC
22689865 ATTT
1 ATTT
22689869 TCATAAGACA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
34 14 0.41
35 20 0.59
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (35 bp):
ATTTAGAAAGTAATAATTTACCATTCAATAGATAC
Found at i:22690978 original size:34 final size:35
Alignment explanation
Indices: 22690935--22691007 Score: 94
Period size: 35 Copynumber: 2.1 Consensus size: 35
22690925 CACTTATTTA
* * *
22690935 ATTTTGAAAGTAATAA-TTATCATTCAGTAGATAC
1 ATTTAGAAAGTAATAATTTACCATTCAATAGATAC
* *
22690969 ATTTAGAAAGTGATAATTTACCATTCAATGGATAC
1 ATTTAGAAAGTAATAATTTACCATTCAATAGATAC
22691004 ATTT
1 ATTT
22691008 TCATAAGACA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
34 14 0.42
35 19 0.58
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (35 bp):
ATTTAGAAAGTAATAATTTACCATTCAATAGATAC
Found at i:22692119 original size:34 final size:34
Alignment explanation
Indices: 22692081--22692146 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
22692071 TTAATTTTGA
*
22692081 AAAGT-AATAATTATCATTCAATAGATACATTTAG
1 AAAGTGAA-AATTACCATTCAATAGATACATTTAG
* *
22692115 AAAGTGAAATTTACCATTCAATGGATACATTT
1 AAAGTGAAAATTACCATTCAATAGATACATTT
22692147 TCGTAAGACA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 26 0.93
35 2 0.07
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.35
Consensus pattern (34 bp):
AAAGTGAAAATTACCATTCAATAGATACATTTAG
Found at i:22693250 original size:34 final size:35
Alignment explanation
Indices: 22693212--22693278 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
22693202 TTAATTTTGA
* *
22693212 AAAGTAATAA-TTATCATTCAGTAGATACATTTAG
1 AAAGTAATAATTTACCATTCAATAGATACATTTAG
* *
22693246 AAAGTGATAATTTACCATTCAATGGATACATTT
1 AAAGTAATAATTTACCATTCAATAGATACATTT
22693279 TCATAAGACA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 9 0.32
35 19 0.68
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.36
Consensus pattern (35 bp):
AAAGTAATAATTTACCATTCAATAGATACATTTAG
Found at i:22695526 original size:34 final size:35
Alignment explanation
Indices: 22695488--22695554 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
22695478 TTAATTTTGA
22695488 AAAGTAATAA-TTATCATTCAATAGATACATTTAG
1 AAAGTAATAATTTATCATTCAATAGATACATTTAG
* *
22695522 AAAGTGATAATTTATCATTCAATGGATACATTT
1 AAAGTAATAATTTATCATTCAATAGATACATTT
22695555 TCATAAGACA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 9 0.30
35 21 0.70
ACGTcount: A:0.43, C:0.09, G:0.10, T:0.37
Consensus pattern (35 bp):
AAAGTAATAATTTATCATTCAATAGATACATTTAG
Found at i:22700470 original size:34 final size:35
Alignment explanation
Indices: 22700432--22700499 Score: 111
Period size: 35 Copynumber: 2.0 Consensus size: 35
22700422 TTCAATTTTG
22700432 GAAAGTAATAA-TTATCATTCAATAGATACATTTA
1 GAAAGTAATAATTTATCATTCAATAGATACATTTA
* *
22700466 GAAAGTGATAATTTATCATTCAATGGATACATTT
1 GAAAGTAATAATTTATCATTCAATAGATACATTT
22700500 TCATGGGAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 10 0.32
35 21 0.68
ACGTcount: A:0.43, C:0.09, G:0.12, T:0.37
Consensus pattern (35 bp):
GAAAGTAATAATTTATCATTCAATAGATACATTTA
Found at i:22701088 original size:48 final size:49
Alignment explanation
Indices: 22701036--22701134 Score: 191
Period size: 48 Copynumber: 2.0 Consensus size: 49
22701026 ACGAGCCATA
22701036 AAAGACTCAATAAATCAAAATACATGGGATCT-AAAAAAACGAGCCTCT
1 AAAGACTCAATAAATCAAAATACATGGGATCTAAAAAAAACGAGCCTCT
22701084 AAAGACTCAATAAATCAAAATACATGGGATCTAAAAAAAACGAGCCTCT
1 AAAGACTCAATAAATCAAAATACATGGGATCTAAAAAAAACGAGCCTCT
22701133 AA
1 AA
22701135 GGCTCAAGAA
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
48 32 0.64
49 18 0.36
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (49 bp):
AAAGACTCAATAAATCAAAATACATGGGATCTAAAAAAAACGAGCCTCT
Found at i:22701499 original size:22 final size:22
Alignment explanation
Indices: 22701465--22701513 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
22701455 ATAACATAAG
*
22701465 GAATGAGAGAAGAAAGA-GGAAA
1 GAATGAGAAAAGAAAGACGG-AA
* *
22701487 GAATGATAAAAGAGAGACGGAA
1 GAATGAGAAAAGAAAGACGGAA
22701509 GAATG
1 GAATG
22701514 GGTATTGGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.55, C:0.02, G:0.35, T:0.08
Consensus pattern (22 bp):
GAATGAGAAAAGAAAGACGGAA
Found at i:22702948 original size:34 final size:35
Alignment explanation
Indices: 22702904--22702970 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
22702894 CAATAAAATA
*
22702904 TTTTCCGTAAAATGATTT-CGGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
* *
22702938 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTT
22702971 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
Found at i:22712403 original size:25 final size:26
Alignment explanation
Indices: 22712350--22712410 Score: 70
Period size: 29 Copynumber: 2.3 Consensus size: 26
22712340 GAGCAGCAAA
22712350 TAAATATTTATTCTTAGACAATGGCTAAT
1 TAAATATTTATTCTTAGACAA--G-TAAT
* *
22712379 TTAATATTTATTTTTAGACAA-TAAT
1 TAAATATTTATTCTTAGACAAGTAAT
22712404 TAAATAT
1 TAAATAT
22712411 GCAAATTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 10 0.34
29 19 0.66
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.46
Consensus pattern (26 bp):
TAAATATTTATTCTTAGACAAGTAAT
Found at i:22713466 original size:2 final size:2
Alignment explanation
Indices: 22713459--22713556 Score: 196
Period size: 2 Copynumber: 49.0 Consensus size: 2
22713449 ATTGGTTATA
22713459 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
22713501 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
22713543 TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG
22713557 AAGAGTTCGT
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 96 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:22715262 original size:30 final size:29
Alignment explanation
Indices: 22715204--22715262 Score: 68
Period size: 30 Copynumber: 2.0 Consensus size: 29
22715194 GAAAAGTATA
*
22715204 TTGATTGAAAAGTAATTAATAGTTTGAAT
1 TTGATTGAAAAGTAATTAATAATTTGAAT
22715233 TTGATTGGAAAA-TGAATTAA-AATTATGAAT
1 TTGATT-GAAAAGT-AATTAATAATT-TGAAT
22715263 AGAATAAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
29 10 0.38
30 16 0.62
ACGTcount: A:0.44, C:0.00, G:0.17, T:0.39
Consensus pattern (29 bp):
TTGATTGAAAAGTAATTAATAATTTGAAT
Found at i:22715575 original size:37 final size:39
Alignment explanation
Indices: 22715516--22715611 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
22715506 CGGATAGATT
* * * *
22715516 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
22715553 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
22715592 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
22715612 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:22721002 original size:114 final size:114
Alignment explanation
Indices: 22720849--22721497 Score: 711
Period size: 114 Copynumber: 5.7 Consensus size: 114
22720839 GCGTTTCCAT
* * * * *
22720849 AAAGCGCCGC-AAAATACCTAAGCCCAACGACGCCGTTTTTTGAGTTTTCGGGGATTTAGCGGCG
1 AAAGCGCCACAAAAAAACCTAAGCCCAACGACGCCGTTTTTTGAGCTTTCGGGGATTTAGTGGCA
* * * * *
22720913 TTTTTAAGAAAGTGCCGCTAATGCTCAGGGCTTTCGCTGTGTTTTCGAG
66 TTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGAG
* * *
22720962 AAAGCGCCACAAAAAAACCAAAGCCCAACGACGCCATTTTTTGAGCTTTCGGGGATTTAGTGACA
1 AAAGCGCCACAAAAAAACCTAAGCCCAACGACGCCGTTTTTTGAGCTTTCGGGGATTTAGTGGCA
* *
22721027 TTTTTAAGTAAA-CGCCGCTAATGCTCAGGCCTTTAGCGGCGTTTTTGGG
66 TTTTTAAG-AAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGAG
* * * *
22721076 AAAGCGCCGA-AAAGATACCTAAGCCCAATGACGCCGTTTTCTGAGCTTTCGGGGATTTAGTGGC
1 AAAGCGCC-ACAAAAAAACCTAAGCCCAACGACGCCGTTTTTTGAGCTTTCGGGGATTTAGTGGC
* * *
22721140 GTTTTTAAGTAAGCGCCGCTAATGCTCAGGGCTTTAGCAGCGTTTTTGAG
65 ATTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGAG
*
22721190 AAAGCGCCACAAAAAAACCAAAGCCCAACGACGCCGTTTTTTGAGCTTTCGGGGATTTAGTGGCA
1 AAAGCGCCACAAAAAAACCTAAGCCCAACGACGCCGTTTTTTGAGCTTTCGGGGATTTAGTGGCA
* * *
22721255 TTTTTAAGTAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCATTTTTGAG
66 TTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGAG
* * * * * * * *
22721304 AAAGCGCCGCAACAAAAA-CTAAGCCCAACTACACCGCTTTCTGA-CAATTCGTGGGCTTTAGCG
1 AAAGCGCCACAA-AAAAACCTAAGCCCAACGACGCCGTTTTTTGAGC-TTTCG-GGGATTTAGTG
* * * * * * *
22721367 GC-GTTTTAAGAATGCGCCGCCAATTCTTAGGGCTTTAGGGGCGTTTTTGTTG
63 GCATTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTG-AG
* * * * * * * ** * * *
22721419 -AAGCGCCGCAAAAAAATCTAAGCCCAACGGCGTCGTTTTCTAAACTTTTAGGGCTTTAGCGGCG
1 AAAGCGCCACAAAAAAACCTAAGCCCAACGACGCCGTTTTTTGAGCTTTCGGGGATTTAGTGGCA
22721483 TTTTTAA-AAAGCGCC
66 TTTTTAAGAAAGCGCC
22721498 ACAAAAACCT
Statistics
Matches: 458, Mismatches: 66, Indels: 24
0.84 0.12 0.04
Matches are distributed among these distances:
113 38 0.08
114 398 0.87
115 22 0.05
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (114 bp):
AAAGCGCCACAAAAAAACCTAAGCCCAACGACGCCGTTTTTTGAGCTTTCGGGGATTTAGTGGCA
TTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGAG
Found at i:22721259 original size:228 final size:226
Alignment explanation
Indices: 22720849--22721457 Score: 798
Period size: 228 Copynumber: 2.7 Consensus size: 226
22720839 GCGTTTCCAT
* * * *
22720849 AAAGCGCCGCAAAATACCTAAGCCCAACGACGCCGTTTTTTGAGTTTTCGGGGATTTAGCGGCGT
1 AAAGCGCCGAAAAATACCTAAGCCCAATGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGT
* * * * *
22720914 TTTTAAGAAAGTGCCGCTAATGCTCAGGGCTTTCGCTGTGTTTTCGAGAAAGCGCCACAAAAAAA
66 TTTTAAG-AAGCGCCGCTAATGCTCAGGGCTTTAGCAGCGTTTTTGAGAAAGCGCCACAAAAAAA
*
22720979 CCAAAGCCCAACGACGCCATTTTTTGAGCTTTCGGGGATTTAGTGACATTTTTAAGTAAACGCCG
130 CCAAAGCCCAACGACGCCGTTTTTTGAGCTTTCGGGGATTTAGTGACATTTTTAAGTAAACGCCG
* *
22721044 CTAATGCTC-AGGCCTTTAGCGGCGTTTTTGGG
195 CTAATGCTCAAGG-CTTTAGCGGCATTTTTGAG
*
22721076 AAAGCGCCGAAAAGATACCTAAGCCCAATGACGCCGTTTTCTGAGCTTTCGGGGATTTAGTGGCG
1 AAAGCGCCGAAAA-ATACCTAAGCCCAATGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCG
22721141 TTTTTAAGTAAGCGCCGCTAATGCTCAGGGCTTTAGCAGCGTTTTTGAGAAAGCGCCACAAAAAA
65 TTTTTAAG-AAGCGCCGCTAATGCTCAGGGCTTTAGCAGCGTTTTTGAGAAAGCGCCACAAAAAA
* *
22721206 ACCAAAGCCCAACGACGCCGTTTTTTGAGCTTTCGGGGATTTAGTGGCATTTTTAAGTAAGCGCC
129 ACCAAAGCCCAACGACGCCGTTTTTTGAGCTTTCGGGGATTTAGTGACATTTTTAAGTAAACGCC
22721271 GCTAATGCTCAAGGCTTTAGCGGCATTTTTGAG
194 GCTAATGCTCAAGGCTTTAGCGGCATTTTTGAG
* * * * *
22721304 AAAGCGCCGCAACAAA-AACTAAGCCCAACT-ACACCGCTTTCTGA-CAATTCGTGGGCTTTAGC
1 AAAGCGCCG-AA-AAATACCTAAGCCCAA-TGACGCCGTTTTCTGAGC-TTTCG-GGGATTTAGC
* * * ** * *
22721366 GGCG-TTTTAAGAATGCGCCGCCAATTCTTAGGGCTTTAGGGGCGTTTTTGTTG-AAGCGCCGCA
61 GGCGTTTTTAAGAA-GCGCCGCTAATGCTCAGGGCTTTAGCAGCGTTTTTG-AGAAAGCGCCACA
* * * *
22721429 AAAAAATCTAAGCCCAACGGCGTCGTTTT
124 AAAAAACCAAAGCCCAACGACGCCGTTTT
22721458 CTAAACTTTT
Statistics
Matches: 340, Mismatches: 33, Indels: 17
0.87 0.08 0.04
Matches are distributed among these distances:
227 15 0.04
228 303 0.89
229 20 0.06
230 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.27
Consensus pattern (226 bp):
AAAGCGCCGAAAAATACCTAAGCCCAATGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGT
TTTTAAGAAGCGCCGCTAATGCTCAGGGCTTTAGCAGCGTTTTTGAGAAAGCGCCACAAAAAAAC
CAAAGCCCAACGACGCCGTTTTTTGAGCTTTCGGGGATTTAGTGACATTTTTAAGTAAACGCCGC
TAATGCTCAAGGCTTTAGCGGCATTTTTGAG
Found at i:22721535 original size:19 final size:18
Alignment explanation
Indices: 22721511--22721550 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
22721501 AAAACCTTTT
22721511 ATTTG-TTATTTACTATTTA
1 ATTTGTTTATTTA-TA-TTA
22721530 ATTTGTTTATTTATATTA
1 ATTTGTTTATTTATATTA
22721548 ATT
1 ATT
22721551 AAAATTCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 6 0.30
19 7 0.35
20 7 0.35
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.65
Consensus pattern (18 bp):
ATTTGTTTATTTATATTA
Found at i:22721856 original size:14 final size:15
Alignment explanation
Indices: 22721828--22721860 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
22721818 AACGTTTATA
22721828 GATTATGGAATTAGG
1 GATTATGGAATTAGG
22721843 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
22721857 GATT
1 GATT
22721861 CTGGTTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:22722022 original size:80 final size:82
Alignment explanation
Indices: 22721932--22722089 Score: 223
Period size: 80 Copynumber: 2.0 Consensus size: 82
22721922 ATTTAGCATC
* *
22721932 AGGTTAGGATTTAGGGTTTAGATTAATTAGTGTGTTTTAATTT-T-TATGAAATAAGG-TTAAGG
1 AGGTTAGGATTTAGGGTTTAGATTAATTAATAT-TTTTAATTTGTATATGAAATAAGGTTTAAGG
*
22721994 GTTAGGGGTTAGGGATTT
65 GTTAGGAGTTAGGGATTT
* * *
22722012 AGGTTAGGATTTAGGGTTTTGATTAATTAATATTTTTAATTTGTATATTAAATAAGGTTTAGGGG
1 AGGTTAGGATTTAGGGTTTAGATTAATTAATATTTTTAATTTGTATATGAAATAAGGTTTAAGGG
*
22722077 TTAGTAGTTAGGG
66 TTAGGAGTTAGGG
22722090 GTTAGTGGTT
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
79 9 0.13
80 31 0.46
81 11 0.16
82 17 0.25
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.44
Consensus pattern (82 bp):
AGGTTAGGATTTAGGGTTTAGATTAATTAATATTTTTAATTTGTATATGAAATAAGGTTTAAGGG
TTAGGAGTTAGGGATTT
Found at i:22722089 original size:14 final size:14
Alignment explanation
Indices: 22722070--22722107 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
22722060 TAAATAAGGT
22722070 TTAGGGGTTAGTAG
1 TTAGGGGTTAGTAG
*
22722084 TTAGGGGTTAGTGG
1 TTAGGGGTTAGTAG
*
22722098 TTTGGGGTTA
1 TTAGGGGTTA
22722108 AGGGTTAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.16, C:0.00, G:0.45, T:0.39
Consensus pattern (14 bp):
TTAGGGGTTAGTAG
Found at i:22722524 original size:14 final size:14
Alignment explanation
Indices: 22722507--22722550 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
22722497 AAGTTTGGGA
22722507 TTTGGGGTTTAGGG
1 TTTGGGGTTTAGGG
**
22722521 TTTGGGGTTT-GAT
1 TTTGGGGTTTAGGG
*
22722534 TTTGGGGTTTAAGG
1 TTTGGGGTTTAGGG
22722548 TTT
1 TTT
22722551 AGACTTTATG
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.09, C:0.00, G:0.41, T:0.50
Consensus pattern (14 bp):
TTTGGGGTTTAGGG
Found at i:22722539 original size:13 final size:14
Alignment explanation
Indices: 22722507--22722544 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
22722497 AAGTTTGGGA
*
22722507 TTTGGGGTTTAGGG
1 TTTGGGGTTTAGAG
*
22722521 TTTGGGGTTT-GAT
1 TTTGGGGTTTAGAG
22722534 TTTGGGGTTTA
1 TTTGGGGTTTA
22722545 AGGTTTAGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.08, C:0.00, G:0.42, T:0.50
Consensus pattern (14 bp):
TTTGGGGTTTAGAG
Found at i:22723579 original size:147 final size:147
Alignment explanation
Indices: 22723399--22723868 Score: 371
Period size: 147 Copynumber: 3.2 Consensus size: 147
22723389 TACGTTGCTA
* * * ** * * * *
22723399 TTAGTGGCGCTTTACATCAACCGCTGCAAAATTGTAATTATGTTTATTGAAATGTTGTCGTTTTG
1 TTAGTGGCGCTTTACATCAAACGCCGCAAAATTGTAATAACATTTATAGAAACGCTGCCGTTTTG
** * * *
22723464 TGTATGGTATTAGTGGCGTTTTTAT-GAAAACGCCACAAGCTTGAGTTAACTGTTGGGGAAACGA
66 TAAATGGTATTAATGGCGTTTTT-TCGAAAACGCCACAAGCTTGAGGTAACTGTTGAGGAAACGA
* *
22723528 CTTCG-TTTGAGCTTATAG
130 CTGCGTTTTGA-CTTACAG
** *
22723546 TTAGTGGCGCTTTAC-TCAAAACGCCGCAAAATTGTTCTAACATTTATAGAAACGCTGCCTTTTT
1 TTAGTGGCGCTTTACATC-AAACGCCGCAAAATTGTAATAACATTTATAGAAACGCTGCCGTTTT
* * * * * *
22723610 GTAAATGTTATTAATGGCGTTTTTTCGAAAACGCCACGAGTTTGAGGTAAGTGTTGATGAAGCGA
65 GTAAATGGTATTAATGGCGTTTTTTCGAAAACGCCACAAGCTTGAGGTAACTGTTGAGGAAACGA
*
22723675 CTGCGTTTTGATTTACAG
130 CTGCGTTTTGACTTACAG
**** * * * * **
22723693 TTAGTGGCGCTTCGGTTCAAACGCCGCAAAAATGT-TTCAACATTTATTGATACGAGGCCGTTTT
1 TTAGTGGCGCTTTACATCAAACGCCGCAAAATTGTAAT-AACATTTATAGAAACGCTGCCGTTTT
* * * * * * ** *
22723757 GCTATAT--TATTAGTGGCGTTTATTCAAAAACGCCAC-AGGTGTGAGCTATTTGTTGATGAAAC
65 G-TAAATGGTATTAATGGCGTTTTTTCGAAAACGCCACAAGCT-TGAGGTAACTGTTGAGGAAAC
* * *
22723819 AACTTCGTTTTGACTTATAG
128 GACTGCGTTTTGACTTACAG
**
22723839 TTAGTGGCGCTTATTTAT-AAACGCCGCAAA
1 TTAGTGGCGCTT-TACATCAAACGCCGCAAA
22723869 TGGTTAATTT
Statistics
Matches: 262, Mismatches: 53, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
145 3 0.01
146 87 0.33
147 161 0.61
148 11 0.04
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (147 bp):
TTAGTGGCGCTTTACATCAAACGCCGCAAAATTGTAATAACATTTATAGAAACGCTGCCGTTTTG
TAAATGGTATTAATGGCGTTTTTTCGAAAACGCCACAAGCTTGAGGTAACTGTTGAGGAAACGAC
TGCGTTTTGACTTACAG
Found at i:22723830 original size:146 final size:146
Alignment explanation
Indices: 22723490--22723868 Score: 376
Period size: 146 Copynumber: 2.6 Consensus size: 146
22723480 CGTTTTTATG
* * * **
22723490 AAAACGCCACAAGCT-TGAGTTAACTGTTGGGGAAACGACTTCG-TTTGAGCTTATAGTTAGTGG
1 AAAACGCCACGAG-TGTGAGCTAAGTGTTGATGAAACGACTTCGTTTTGA-CTTATAGTTAGTGG
* * ** * *
22723553 CGCTTTACTCAAAACGCCGCAAAATTGTTCTAACATTTATAGAAACGCTGCCTTTTTGTAAATGT
64 CGCTTGACTCAAAACGCCGCAAAAATGTTCTAACATTTATAGAAACGAGGCCGTTTTGT-AATAT
* *
22723618 TATTAATGGCGTTTTTTCG
128 TATTAATGGCGTTTATTCA
* * * * * *
22723637 AAAACGCCACGAGTTTGAGGTAAGTGTTGATGAAGCGACTGCGTTTTGATTTACAGTTAGTGGCG
1 AAAACGCCACGAGTGTGAGCTAAGTGTTGATGAAACGACTTCGTTTTGACTTATAGTTAGTGGCG
** * *
22723702 CTTCGGTTC-AAACGCCGCAAAAATGTT-TCAACATTTATTGATACGAGGCCGTTTTGCT-ATAT
66 CTT-GACTCAAAACGCCGCAAAAATGTTCT-AACATTTATAGAAACGAGGCCGTTTTG-TAATAT
*
22723764 TATTAGTGGCGTTTATTCA
128 TATTAATGGCGTTTATTCA
** *
22723783 AAAACGCCAC-AGGTGTGAGCTATTTGTTGATGAAACAACTTCGTTTTGACTTATAGTTAGTGGC
1 AAAACGCCACGA-GTGTGAGCTAAGTGTTGATGAAACGACTTCGTTTTGACTTATAGTTAGTGGC
* *
22723847 GCTT-ATTTATAAACGCCGCAAA
65 GCTTGACTCA-AAACGCCGCAAA
22723869 TGGTTAATTT
Statistics
Matches: 191, Mismatches: 33, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
144 2 0.01
145 1 0.01
146 90 0.47
147 90 0.47
148 8 0.04
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (146 bp):
AAAACGCCACGAGTGTGAGCTAAGTGTTGATGAAACGACTTCGTTTTGACTTATAGTTAGTGGCG
CTTGACTCAAAACGCCGCAAAAATGTTCTAACATTTATAGAAACGAGGCCGTTTTGTAATATTAT
TAATGGCGTTTATTCA
Found at i:22725209 original size:15 final size:15
Alignment explanation
Indices: 22725189--22725220 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
22725179 AGGGTTGAAG
22725189 TATTTGGTACTAATT
1 TATTTGGTACTAATT
22725204 TATTTGGTACTAATT
1 TATTTGGTACTAATT
22725219 TA
1 TA
22725221 CTGTTATCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.28, C:0.06, G:0.12, T:0.53
Consensus pattern (15 bp):
TATTTGGTACTAATT
Found at i:22726019 original size:20 final size:19
Alignment explanation
Indices: 22725977--22726029 Score: 65
Period size: 18 Copynumber: 2.8 Consensus size: 19
22725967 ACTTATTAAT
*
22725977 ATATATATTTTAA-AGTTA
1 ATATATATTTTAATATTTA
22725995 ATATATATTTTCAATATTTA
1 ATATATATTTT-AATATTTA
*
22726015 TTATAT-TTTTAATAT
1 ATATATATTTTAATAT
22726030 ATTTTTACAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 16 0.52
19 6 0.19
20 9 0.29
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (19 bp):
ATATATATTTTAATATTTA
Found at i:22726192 original size:13 final size:13
Alignment explanation
Indices: 22726176--22726340 Score: 127
Period size: 13 Copynumber: 12.5 Consensus size: 13
22726166 TTACTAAAAT
*
22726176 TTACTTTAATATA
1 TTACTTAAATATA
*
22726189 TTACTTGAATATA
1 TTACTTAAATATA
*
22726202 TTACTTAAATAAA
1 TTACTTAAATATA
*
22726215 TTACTTAAATACA
1 TTACTTAAATATA
*
22726228 TTACTTACTAAAAT-
1 TTACTTA--AATATA
** *
22726242 TTGGTTAAATTTA
1 TTACTTAAATATA
*
22726255 TTACTTAAATATG
1 TTACTTAAATATA
*
22726268 TTACTTAAATACA
1 TTACTTAAATATA
* *
22726281 TTTCTTACTAAAAT-
1 TTACTTA--AATATA
** *
22726295 TTGTTTAAATTTA
1 TTACTTAAATATA
*
22726308 TTACTTAAATATG
1 TTACTTAAATATA
*
22726321 TTACTTAAATACA
1 TTACTTAAATATA
22726334 TTACTTA
1 TTACTTA
22726341 CTAAAATTTA
Statistics
Matches: 117, Mismatches: 29, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
12 6 0.05
13 95 0.81
14 10 0.09
15 6 0.05
ACGTcount: A:0.40, C:0.10, G:0.04, T:0.47
Consensus pattern (13 bp):
TTACTTAAATATA
Found at i:22726219 original size:66 final size:66
Alignment explanation
Indices: 22726149--22726278 Score: 161
Period size: 66 Copynumber: 2.0 Consensus size: 66
22726139 CTTACATTAC
* ** * *
22726149 TTACTAAAACATATTTTTTACTAAAATTTACTTTAATATATTACTTGAATATATTACTTAAATAA
1 TTACTAAAACACATTACTTACTAAAATTTACTTAAATATATTACTTAAATATATTACTTAAATAA
22726214 A
66 A
* * ** * *
22726215 TTACTTAAATACATTACTTACTAAAATTTGGTTAAATTTATTACTTAAATATGTTACTTAAATA
1 TTACTAAAACACATTACTTACTAAAATTTACTTAAATATATTACTTAAATATATTACTTAAATA
22726279 CATTTCTTAC
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
66 53 1.00
ACGTcount: A:0.42, C:0.09, G:0.03, T:0.45
Consensus pattern (66 bp):
TTACTAAAACACATTACTTACTAAAATTTACTTAAATATATTACTTAAATATATTACTTAAATAA
A
Found at i:22726257 original size:53 final size:53
Alignment explanation
Indices: 22726200--22726349 Score: 264
Period size: 53 Copynumber: 2.8 Consensus size: 53
22726190 TACTTGAATA
**
22726200 TATTACTTAAATAAATTACTTAAATACATTACTTACTAAAATTTGGTTAAATT
1 TATTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTGGTTAAATT
* *
22726253 TATTACTTAAATATGTTACTTAAATACATTTCTTACTAAAATTTGTTTAAATT
1 TATTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTGGTTAAATT
22726306 TATTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTT
1 TATTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTT
22726350 AAGTATATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
53 92 1.00
ACGTcount: A:0.41, C:0.10, G:0.03, T:0.46
Consensus pattern (53 bp):
TATTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTGGTTAAATT
Found at i:22726397 original size:20 final size:18
Alignment explanation
Indices: 22726372--22726413 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 18
22726362 AATTACTTAC
*
22726372 ATAATTTGTTAAAATATATT
1 ATAATTT-TAAAAATA-ATT
22726392 ATAATTTTAAAAATAATT
1 ATAATTTTAAAAATAATT
22726410 ATAA
1 ATAA
22726414 ATAAGATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.33
19 7 0.33
20 7 0.33
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (18 bp):
ATAATTTTAAAAATAATT
Found at i:22726532 original size:16 final size:15
Alignment explanation
Indices: 22726511--22726560 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
22726501 TATTTATATA
22726511 AACTTACATAATACAT
1 AACTTACATAATAC-T
*
22726527 AACTTACAT-GT--T
1 AACTTACATAATACT
22726539 AACTTACATAATACGT
1 AACTTACATAATAC-T
22726555 AACTTA
1 AACTTA
22726561 TAAATTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 10 0.36
13 1 0.04
15 1 0.04
16 16 0.57
ACGTcount: A:0.44, C:0.18, G:0.04, T:0.34
Consensus pattern (15 bp):
AACTTACATAATACT
Found at i:22726609 original size:28 final size:28
Alignment explanation
Indices: 22726573--22726717 Score: 114
Period size: 28 Copynumber: 5.0 Consensus size: 28
22726563 AATTTTTTAT
*
22726573 ATATAAACTTACATAATACATTACTTAC
1 ATATAAACTTACATAATACATAACTTAC
* * **
22726601 ATATTAACTTACATAACTTA-TTAA-TATTT
1 ATATAAACTTACATAA--TACATAACT-TAC
* *
22726630 ATATAAACTTGCATAACTATCACATAAACTTAT
1 ATATAAACTTACAT-A--AT-ACAT-AACTTAC
*
22726663 ATGTAAACTTACATAATACATAACTTAC
1 ATATAAACTTACATAATACATAACTTAC
* *
22726691 ATGTTAACTTACATAATACATAACTTA
1 ATATAAACTTACATAATACATAACTTA
22726718 TAAAAAAAAT
Statistics
Matches: 94, Mismatches: 13, Indels: 20
0.74 0.10 0.16
Matches are distributed among these distances:
28 48 0.51
29 19 0.20
30 6 0.06
31 1 0.01
32 3 0.03
33 16 0.17
34 1 0.01
ACGTcount: A:0.45, C:0.16, G:0.02, T:0.37
Consensus pattern (28 bp):
ATATAAACTTACATAATACATAACTTAC
Found at i:22726689 original size:16 final size:16
Alignment explanation
Indices: 22726668--22726717 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
22726658 CTTATATGTA
22726668 AACTTACATAATACAT
1 AACTTACATAATACAT
*
22726684 AACTTACAT-GT---T
1 AACTTACATAATACAT
22726696 AACTTACATAATACAT
1 AACTTACATAATACAT
22726712 AACTTA
1 AACTTA
22726718 TAAAAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 10 0.36
13 1 0.04
15 1 0.04
16 16 0.57
ACGTcount: A:0.46, C:0.18, G:0.02, T:0.34
Consensus pattern (16 bp):
AACTTACATAATACAT
Found at i:22733235 original size:679 final size:679
Alignment explanation
Indices: 22731938--22733293 Score: 2214
Period size: 679 Copynumber: 2.0 Consensus size: 679
22731928 GATATTGTTA
* *
22731938 TAAGCTAATCGACTATAATAGCTGCATTCAGATATCTTTACAATTCAAACATTATTCCACTAATT
1 TAAGCTAATCGACTATAACAGCTGCATTCAGATATCTTTACAATTCAAACATTATTCCACTAACT
* * *
22732003 ATTACAATCTTCATTAATCCCACATTATCTCATTCACTAAAGAAATCAATTTAGAAGAAATTTTC
66 ATTACAATCTTCATTAATCCCACATTATCCCATACACTAAAGAAATCAATTCAGAAGAAATTTTC
* *
22732068 GGTTTATACATTCTTTAGATACCATACCTGAATAGGTTGATTACCCGAGAATAACCTTTTTTCAA
131 GGTTAATACATTATTTAGATACCATACCTGAATAGGTTGATTACCCGAGAATAACCTTTTTTCAA
**
22732133 CAGTGACATTCCGTATCACGAATAATCTTCAACAAAAATCTAATATCTCTTCTAAAACTCTCTTT
196 CAACGACATTCCGTATCACGAATAATCTTCAACAAAAATCTAATATCTCTTCTAAAACTCTCTTT
* * *
22732198 ATTTGCTAACCCATTCTTGGCTCTGACCGCATTATTATTCATTCATCCACTGAACTCTTCGATTT
261 ACTTGCTAACCCATTCTCGACTCTGACCGCATTATTATTCATTCATCCACTGAACTCTTCGATTT
22732263 TACACTTGTAAGCTTAATCAAGATAAATCTTGTGAATTATGTTATATAAAACTATACAGGTGAGG
326 TACACTTGTAAGCTTAATCAAGATAAATCTTGTGAATTATGTTATATAAAACTATACAGGTGAGG
*
22732328 GGGTGAAGGTCGTAAAGCCTCTAAAGTTGACTCTCATATAAATACACATAACATAAAATTCATCA
391 GGGTGAAGGTCGTAAAGCCTCTAAAGTTAACTCTCATATAAATACACATAACATAAAATTCATCA
* * * * * *
22732393 TTAGCATATATTATAAAATATTTATTCATACCTTTATGAGTTTCTACTAATTATAAGCAACATTT
456 TCAGCATACATTATAAAACATTTATTCAAACCTTTATCAGTTTCTACTAATCATAAGCAACATTT
*
22732458 TTACTCAAATACTTGAGTACCGCATTCAGCATTATCGGAATTAGCTCTGTTGGAAAACATCTCTC
521 TTACTCAAATACTTGAGTACCGCATTCAGCATTATCGGAATTAGCTCGGTTGGAAAACATCTCTC
* *
22732523 TCTAAAAATGAAACAAATCTCATCAAAGTCGGGAGATATCACATTATCATAGGTAATATAATGGC
586 TCTAAAAATGAAACAAATCTCATCAAAGTCGGGAGATATCACACTATCACAGGTAATATAATGGC
* *
22732588 ATTTATTTCTAGACTTCACACATGTTATG
651 ATGTATTTCTAGAATTCACACATGTTATG
* * * *
22732617 TAAGCTACTCGACTATAACCGCTGCATTCAGATATCTTTGCAATTCAAACATTATTCCACTGACT
1 TAAGCTAATCGACTATAACAGCTGCATTCAGATATCTTTACAATTCAAACATTATTCCACTAACT
* *
22732682 ATTACAGTCTTCATTAATCCCACATTATCCCATACACTAAAGAAATCAATTCAGAAGAAATTTTT
66 ATTACAATCTTCATTAATCCCACATTATCCCATACACTAAAGAAATCAATTCAGAAGAAATTTTC
22732747 GGTTAATACATTATTTAGATACCATACCTGAATAGGTTGATTACCCGAGAATAACCTTTTTTTTC
131 GGTTAATACATTATTTAGATACCATACCTGAATAGGTTGATTACCCGAGAATAACC--TTTTTTC
* * * * *
22732812 AACAACGACATTGCGTATCCCGAATGATCTTC-AGAAAAATCTAATATCTCTTCTAGAACTCTCT
194 AACAACGACATTCCGTATCACGAATAATCTTCAACAAAAATCTAATATCTCTTCTAAAACTCTCT
*
22732876 TTACTTGCTAACCCATTCTCGACTCTGACCGCATTATTATTCATTCATCCATTGAACTCTTCGA-
259 TTACTTGCTAACCCATTCTCGACTCTGACCGCATTATTATTCATTCATCCACTGAACTCTTCGAT
* * * *
22732940 TTTACACTTGTGAGCTTCATCAAGATAAATCTTGTGAATT-TCGTTATATAAAATTGTACAGGTG
324 TTTACACTTGTAAGCTTAATCAAGATAAATCTTGTGAATTAT-GTTATATAAAACTATACAGGTG
* *
22733004 AGGGGGTGAAGGTCGTAAAGCCTCTAAATTTAACTCTCATATAAATACACATAATATAAAATTCA
388 AGGGGGTGAAGGTCGTAAAGCCTCTAAAGTTAACTCTCATATAAATACACATAACATAAAATTCA
* *
22733069 TCATCAGCATGCATTATAAAACATTTATTCAAACCTTTATCAGTTTCTACTCATCATAAGCAACA
453 TCATCAGCATACATTATAAAACATTTATTCAAACCTTTATCAGTTTCTACTAATCATAAGCAACA
* * *
22733134 TTTTTACTCAAATACTTGAGTATCGCATTCAGCATTATCGGAATTAGCTCGGTTGGATAATATCT
518 TTTTTACTCAAATACTTGAGTACCGCATTCAGCATTATCGGAATTAGCTCGGTTGGAAAACATCT
* * *
22733199 CTGTCTAAAAATGAAACAAATCTCATCATAGTCGGGAGATATCACACTATCACAGGTTATATAAT
583 CTCTCTAAAAATGAAACAAATCTCATCAAAGTCGGGAGATATCACACTATCACAGGTAATATAAT
22733264 GGCATGTATTTCTAGAATTCACACATGTTA
648 GGCATGTATTTCTAGAATTCACACATGTTA
22733294 CGTTCAGCCC
Statistics
Matches: 624, Mismatches: 50, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
678 1 0.00
679 499 0.80
680 90 0.14
681 34 0.05
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34
Consensus pattern (679 bp):
TAAGCTAATCGACTATAACAGCTGCATTCAGATATCTTTACAATTCAAACATTATTCCACTAACT
ATTACAATCTTCATTAATCCCACATTATCCCATACACTAAAGAAATCAATTCAGAAGAAATTTTC
GGTTAATACATTATTTAGATACCATACCTGAATAGGTTGATTACCCGAGAATAACCTTTTTTCAA
CAACGACATTCCGTATCACGAATAATCTTCAACAAAAATCTAATATCTCTTCTAAAACTCTCTTT
ACTTGCTAACCCATTCTCGACTCTGACCGCATTATTATTCATTCATCCACTGAACTCTTCGATTT
TACACTTGTAAGCTTAATCAAGATAAATCTTGTGAATTATGTTATATAAAACTATACAGGTGAGG
GGGTGAAGGTCGTAAAGCCTCTAAAGTTAACTCTCATATAAATACACATAACATAAAATTCATCA
TCAGCATACATTATAAAACATTTATTCAAACCTTTATCAGTTTCTACTAATCATAAGCAACATTT
TTACTCAAATACTTGAGTACCGCATTCAGCATTATCGGAATTAGCTCGGTTGGAAAACATCTCTC
TCTAAAAATGAAACAAATCTCATCAAAGTCGGGAGATATCACACTATCACAGGTAATATAATGGC
ATGTATTTCTAGAATTCACACATGTTATG
Found at i:22734622 original size:15 final size:16
Alignment explanation
Indices: 22734593--22734622 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22734583 CAAACATGCT
22734593 TTAACACATTATCAAA
1 TTAACACATTATCAAA
22734609 TTAACACA-TATCAA
1 TTAACACATTATCAA
22734623 CAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:22735807 original size:25 final size:25
Alignment explanation
Indices: 22735761--22735827 Score: 89
Period size: 25 Copynumber: 2.7 Consensus size: 25
22735751 TTGTACATGT
* * * *
22735761 ATGCTCACACGAGCTGTGAATCAGA
1 ATGCTTACATGAGCTGTAAATCAAA
*
22735786 ATGCTTACATGAGTTGTAAATCAAA
1 ATGCTTACATGAGCTGTAAATCAAA
22735811 ATGCTTACATGAGCTGT
1 ATGCTTACATGAGCTGT
22735828 GAAAATGGGC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (25 bp):
ATGCTTACATGAGCTGTAAATCAAA
Found at i:22741897 original size:16 final size:16
Alignment explanation
Indices: 22741884--22741915 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
22741874 TGTCACAAGT
22741884 GAAGTAATTCACAAAC
1 GAAGTAATTCACAAAC
22741900 GAAGTAATTCACAAAC
1 GAAGTAATTCACAAAC
22741916 TGATTCAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.19, G:0.12, T:0.19
Consensus pattern (16 bp):
GAAGTAATTCACAAAC
Found at i:22744564 original size:10 final size:10
Alignment explanation
Indices: 22744549--22744620 Score: 62
Period size: 10 Copynumber: 7.1 Consensus size: 10
22744539 AAAAGTAACA
22744549 TTCTTTCTTT
1 TTCTTTCTTT
22744559 TTCTTTCTTCT
1 TTCTTTCTT-T
22744570 TT-TTTCTTCT
1 TTCTTTCTT-T
22744580 TT-TTTCTTT
1 TTCTTTCTTT
22744589 CTTCTTT-TTT
1 -TTCTTTCTTT
*
22744599 CTTCTTTTTTCT
1 -TTCTTTCTT-T
22744611 TTC-TTCTTT
1 TTCTTTCTTT
22744620 T
1 T
22744621 GTTGTTTGAT
Statistics
Matches: 56, Mismatches: 1, Indels: 11
0.82 0.01 0.16
Matches are distributed among these distances:
9 3 0.05
10 41 0.73
11 11 0.20
12 1 0.02
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (10 bp):
TTCTTTCTTT
Found at i:22744571 original size:7 final size:7
Alignment explanation
Indices: 22744553--22744619 Score: 68
Period size: 7 Copynumber: 9.9 Consensus size: 7
22744543 GTAACATTCT
22744553 TTCTTT-
1 TTCTTTC
22744559 TTCTTTC
1 TTCTTTC
*
22744566 TTCTTTT
1 TTCTTTC
22744573 TTC-TTC
1 TTCTTTC
*
22744579 TTTTTTC
1 TTCTTTC
22744586 TT-TCTTC
1 TTCT-TTC
*
22744593 TTTTTTC
1 TTCTTTC
*
22744600 TTCTTTT
1 TTCTTTC
22744607 TTCTTTC
1 TTCTTTC
22744614 TTCTTT
1 TTCTTT
22744620 TGTTGTTTGA
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
6 11 0.22
7 39 0.76
8 1 0.02
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (7 bp):
TTCTTTC
Found at i:22744573 original size:14 final size:13
Alignment explanation
Indices: 22744549--22744620 Score: 78
Period size: 14 Copynumber: 5.5 Consensus size: 13
22744539 AAAAGTAACA
*
22744549 TTCTTTCTTTTTC
1 TTCTTTTTTTTTC
*
22744562 TTTCTTCTTTTTTC
1 -TTCTTTTTTTTTC
22744576 TTCTTTTTTCTTTC
1 TTCTTTTTT-TTTC
22744590 TTC---TTTTTTC
1 TTCTTTTTTTTTC
22744600 TTCTTTTTTCTTTC
1 TTCTTTTTT-TTTC
22744614 TTCTTTT
1 TTCTTTT
22744621 GTTGTTTGAT
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
10 7 0.14
11 3 0.06
13 11 0.22
14 29 0.58
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (13 bp):
TTCTTTTTTTTTC
Done.