Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 71 of 240
Found at i:22744583 original size:24 final size:24
Alignment explanation
Indices: 22744556--22744620 Score: 130
Period size: 24 Copynumber: 2.7 Consensus size: 24
22744546 ACATTCTTTC
22744556 TTTTTCTTTCTTCTTTTTTCTTCT
1 TTTTTCTTTCTTCTTTTTTCTTCT
22744580 TTTTTCTTTCTTCTTTTTTCTTCT
1 TTTTTCTTTCTTCTTTTTTCTTCT
22744604 TTTTTCTTTCTTCTTTT
1 TTTTTCTTTCTTCTTTT
22744621 GTTGTTTGAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (24 bp):
TTTTTCTTTCTTCTTTTTTCTTCT
Found at i:22753004 original size:31 final size:31
Alignment explanation
Indices: 22752936--22753007 Score: 92
Period size: 31 Copynumber: 2.3 Consensus size: 31
22752926 TTAAATTTTT
* *
22752936 TATTAGTCCCTATACTTTTCAAATTAGTCAA
1 TATTAGTCCTTATACTTTTCAAATTAGTAAA
* *
22752967 TTTTAGTCCTTATACTTTTCAAATT-TTAAAA
1 TATTAGTCCTTATACTTTTCAAATTAGT-AAA
22752998 TATTAGTCCT
1 TATTAGTCCT
22753008 GACCCAGACA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
30 1 0.03
31 34 0.97
ACGTcount: A:0.31, C:0.17, G:0.06, T:0.47
Consensus pattern (31 bp):
TATTAGTCCTTATACTTTTCAAATTAGTAAA
Found at i:22754531 original size:69 final size:69
Alignment explanation
Indices: 22754420--22754550 Score: 217
Period size: 69 Copynumber: 1.9 Consensus size: 69
22754410 TTTTTTTCTT
*
22754420 AGTTAAACTATATTTTTAGTTTCCCACTTAAACTTTTATTAGTGCAGGTTATTTTAATATTAGTT
1 AGTTAAACTATATTTTTAGTTTCCCACTTAAACTTTGATTAGTGCAGGTTATTTTAATATTAGTT
22754485 TCCC
66 TCCC
* * * *
22754489 AGTTAAACTCTGTTTTTAGTTTCTCACTTAAACTTTGATTAGTGTAGGTTATTTTAATATTA
1 AGTTAAACTATATTTTTAGTTTCCCACTTAAACTTTGATTAGTGCAGGTTATTTTAATATTA
22754551 TTTGACCTAC
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
69 57 1.00
ACGTcount: A:0.27, C:0.12, G:0.11, T:0.49
Consensus pattern (69 bp):
AGTTAAACTATATTTTTAGTTTCCCACTTAAACTTTGATTAGTGCAGGTTATTTTAATATTAGTT
TCCC
Found at i:22756434 original size:44 final size:44
Alignment explanation
Indices: 22756361--22756451 Score: 146
Period size: 44 Copynumber: 2.1 Consensus size: 44
22756351 AACTTTATTT
* * *
22756361 TTAGCTTCCTACTTAAGCTCTGATTAGTGTAGGTTATTTTAATA
1 TTAGCTTCCCACTTAAACTCTAATTAGTGTAGGTTATTTTAATA
*
22756405 TTAGTTTCCCACTTAAACTCTAATTAGTGTAGGTTATTTTAATA
1 TTAGCTTCCCACTTAAACTCTAATTAGTGTAGGTTATTTTAATA
22756449 TTA
1 TTA
22756452 TTTGACGTAC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.46
Consensus pattern (44 bp):
TTAGCTTCCCACTTAAACTCTAATTAGTGTAGGTTATTTTAATA
Found at i:22758500 original size:18 final size:18
Alignment explanation
Indices: 22758479--22758547 Score: 93
Period size: 18 Copynumber: 3.8 Consensus size: 18
22758469 AGCTTTCAGG
22758479 CATTCTTCTCCCTTCATC
1 CATTCTTCTCCCTTCATC
22758497 CATTCTTCTCCCTTCATC
1 CATTCTTCTCCCTTCATC
* ***
22758515 CAGTAAGCTCCCTTCATC
1 CATTCTTCTCCCTTCATC
*
22758533 CAATCTTCTCCCTTC
1 CATTCTTCTCCCTTC
22758548 CTTCAAATTT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 43 1.00
ACGTcount: A:0.14, C:0.43, G:0.03, T:0.39
Consensus pattern (18 bp):
CATTCTTCTCCCTTCATC
Found at i:22761998 original size:14 final size:15
Alignment explanation
Indices: 22761976--22762052 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
22761966 CAATCAAACA
22761976 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
22761990 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
22762005 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
*
22762025 TCA-AAAATCATTTT
1 CCAGAAAATCATTTT
*
22762039 CCA-AAAAACATTTT
1 CCAGAAAATCATTTT
22762053 AGTAGCAATC
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
14 26 0.51
15 11 0.22
16 1 0.02
18 1 0.02
19 4 0.08
20 8 0.16
ACGTcount: A:0.45, C:0.16, G:0.05, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:22762038 original size:13 final size:14
Alignment explanation
Indices: 22762015--22762052 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
22762005 ACAGAAAAGT
*
22762015 AAAACATTTTTCAA
1 AAAACATTTTCCAA
*
22762029 AAATCATTTTCCAA
1 AAAACATTTTCCAA
22762043 AAAACATTTT
1 AAAACATTTT
22762053 AGTAGCAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (14 bp):
AAAACATTTTCCAA
Found at i:22762259 original size:20 final size:23
Alignment explanation
Indices: 22762230--22762281 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
22762220 TTATGCTAAA
22762230 ATAC-TATTTAAT-AT-A-TATT
1 ATACTTATTTAATAATAAGTATT
22762249 ATACTTATTTAATAATAAGTATT
1 ATACTTATTTAATAATAAGTATT
22762272 ATACTTATTT
1 ATACTTATTT
22762282 GTTTTAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.14
20 8 0.28
21 2 0.07
22 1 0.03
23 14 0.48
ACGTcount: A:0.40, C:0.06, G:0.02, T:0.52
Consensus pattern (23 bp):
ATACTTATTTAATAATAAGTATT
Found at i:22763031 original size:19 final size:19
Alignment explanation
Indices: 22763000--22763057 Score: 75
Period size: 18 Copynumber: 3.1 Consensus size: 19
22762990 ATTTTAAAAA
22763000 TATAAAT-TTTTGAATTTT
1 TATAAATATTTTGAATTTT
22763018 TATAAATATTTTGAA-TTT
1 TATAAATATTTTGAATTTT
*
22763036 TAAAAATTATTTTGATATTTT
1 TATAAA-TATTTTGA-ATTTT
22763057 T
1 T
22763058 TTGTAATTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
18 15 0.43
19 15 0.43
20 1 0.03
21 4 0.11
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:22763278 original size:26 final size:25
Alignment explanation
Indices: 22763226--22763279 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
22763216 TGATTTGAAA
* **
22763226 AAATCGAATCAATCAATTTTTTTTC
1 AAATCGAATCAATCAAGTTTTACTC
*
22763251 AAATCGAATCGAATCGAGTTTTACTC
1 AAATCGAATC-AATCAAGTTTTACTC
22763277 AAA
1 AAA
22763280 CTAATTTTGG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.35
Consensus pattern (25 bp):
AAATCGAATCAATCAAGTTTTACTC
Found at i:22763688 original size:22 final size:21
Alignment explanation
Indices: 22763658--22763701 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
22763648 ACACCAAAAC
*
22763658 AGGCTTTTAGCGGCGCTTTTTT
1 AGGCCTTTAGCGGCG-TTTTTT
*
22763680 AGGCCTTTAGCGGTGTTTTTT
1 AGGCCTTTAGCGGCGTTTTTT
22763701 A
1 A
22763702 ACGCCGCTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.11, C:0.16, G:0.27, T:0.45
Consensus pattern (21 bp):
AGGCCTTTAGCGGCGTTTTTT
Found at i:22763847 original size:43 final size:43
Alignment explanation
Indices: 22763794--22764021 Score: 289
Period size: 43 Copynumber: 5.3 Consensus size: 43
22763784 TTTTATAAAT
*
22763794 AAACGCCACTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* * *
22763837 AAACGCCACTAAAGACCATGACCTTTAACGGTGCTTTTCCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
22763880 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* * * **
22763923 AAACGCCGCTAAAGACTAAGACCTTTAACGATGCTTTTTCCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGC-TTTTCCCAC
** * ***
22763967 AAACAACGCTATAGA--ATAGACCTTTAGCGGCGCTTTTTAGAC
1 AAACGCCGCTAAAGACCAT-GACCTTTAGCGGCGCTTTTCCCAC
22764009 AAACGCCGCTAAA
1 AAACGCCGCTAAA
22764022 AATATATCTT
Statistics
Matches: 160, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
42 17 0.11
43 122 0.76
44 21 0.13
ACGTcount: A:0.31, C:0.31, G:0.16, T:0.22
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
Found at i:22763900 original size:86 final size:87
Alignment explanation
Indices: 22763794--22764021 Score: 327
Period size: 86 Copynumber: 2.6 Consensus size: 87
22763784 TTTTATAAAT
* * *
22763794 AAACGCCACTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAGACCATGAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGAC
*
22763859 CTTTAACGGTGC-TTTTCCCAC
66 CTTTAACGATGCTTTTTCCCAC
*
22763880 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACTAAGAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGAC
22763945 CTTTAACGATGCTTTTTCCCAC
66 CTTTAACGATGCTTTTTCCCAC
** * ***
22763967 AAACAACGCTATAGA--ATAGACCTTTAGCGGCGCTTTTTAGACAAACGCCGCTAAA
1 AAACGCCGCTAAAGACCAT-GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAA
22764022 AATATATCTT
Statistics
Matches: 129, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
85 2 0.02
86 106 0.82
87 21 0.16
ACGTcount: A:0.31, C:0.31, G:0.16, T:0.22
Consensus pattern (87 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGAC
CTTTAACGATGCTTTTTCCCAC
Found at i:22764340 original size:43 final size:43
Alignment explanation
Indices: 22764292--22764382 Score: 116
Period size: 43 Copynumber: 2.1 Consensus size: 43
22764282 ACATATGCAA
* *
22764292 GGTAATAAAA-TATACAATGCATTTTCTTAATC-AAGTAAATCTT
1 GGTAATAAAAGT-TACAATACATTTACTTAATCAAAG-AAATCTT
*
22764335 GGTAATAAAAGTTATAATACATTTACTTAATCAAAGAAATCTT
1 GGTAATAAAAGTTACAATACATTTACTTAATCAAAGAAATCTT
22764378 -GTAAT
1 GGTAAT
22764383 GAACTCAAAG
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
42 5 0.12
43 34 0.79
44 4 0.09
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (43 bp):
GGTAATAAAAGTTACAATACATTTACTTAATCAAAGAAATCTT
Found at i:22768140 original size:13 final size:13
Alignment explanation
Indices: 22768122--22768146 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22768112 TGTCAATCTA
22768122 TTACATTAATTTG
1 TTACATTAATTTG
22768135 TTACATTAATTT
1 TTACATTAATTT
22768147 ATTTATGTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.56
Consensus pattern (13 bp):
TTACATTAATTTG
Found at i:22768618 original size:7 final size:7
Alignment explanation
Indices: 22768608--22768659 Score: 68
Period size: 7 Copynumber: 7.4 Consensus size: 7
22768598 CACTAACTCT
22768608 TAACCCC
1 TAACCCC
*
22768615 TAACCTC
1 TAACCCC
22768622 TAACCCC
1 TAACCCC
22768629 TAACCCC
1 TAACCCC
*
22768636 TAATCCC
1 TAACCCC
**
22768643 TAACTAC
1 TAACCCC
22768650 TAACCCC
1 TAACCCC
22768657 TAA
1 TAA
22768660 ATCTTATTTA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.33, C:0.46, G:0.00, T:0.21
Consensus pattern (7 bp):
TAACCCC
Found at i:22768624 original size:21 final size:20
Alignment explanation
Indices: 22768595--22768659 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 20
22768585 TTAAACCTTA
*
22768595 AATCACTAACTCTTAACCCCT
1 AATCCCTAACTC-TAACCCCT
*
22768616 AA-CCTCTAACCCCTAACCCCT
1 AATCC-CTAA-CTCTAACCCCT
22768637 AATCCCTAACTACTAACCCCT
1 AATCCCTAACT-CTAACCCCT
22768658 AA
1 AA
22768660 ATCTTATTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
20 2 0.05
21 31 0.84
22 4 0.11
ACGTcount: A:0.34, C:0.43, G:0.00, T:0.23
Consensus pattern (20 bp):
AATCCCTAACTCTAACCCCT
Found at i:22768779 original size:74 final size:75
Alignment explanation
Indices: 22768649--22768789 Score: 214
Period size: 74 Copynumber: 1.9 Consensus size: 75
22768639 TCCCTAACTA
* *
22768649 CTAACCCCTAAATCTTATTTAATATATAAATTAAAAACACTAATTAATCTAGACCCTAAACCCTA
1 CTAACCCCTAAACCTTATTTAATATATAAATTAAAAACACTAATTAATCTAAACCCTAAACCCTA
22768714 ACCTAAATCC
66 ACCTAAATCC
* * *
22768724 CTAACCCCTACACCTTA-TTCA-ATATAAATTAGAACACACTAATTAATCTAAACCCTAAACCCT
1 CTAACCCCTAAACCTTATTTAATATATAAATTA-AAAACACTAATTAATCTAAACCCTAAACCCT
22768787 AAC
65 AAC
22768790 ATGACACTGA
Statistics
Matches: 60, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
73 10 0.17
74 35 0.58
75 15 0.25
ACGTcount: A:0.43, C:0.28, G:0.01, T:0.28
Consensus pattern (75 bp):
CTAACCCCTAAACCTTATTTAATATATAAATTAAAAACACTAATTAATCTAAACCCTAAACCCTA
ACCTAAATCC
Found at i:22768945 original size:21 final size:20
Alignment explanation
Indices: 22768923--22768992 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 20
22768913 AATCTTTAAA
22768923 CCCTAAATCACTAACTCTTAAC
1 CCCT-AATCACTAACTC-TAAC
* * *
22768945 CTCTAACCACTAACCCCTAAC
1 CCCTAATCACTAA-CTCTAAC
*
22768966 CCCTAATCCCTAACTACTAAC
1 CCCTAATCACTAACT-CTAAC
22768987 CCCTAA
1 CCCTAA
22768993 ATCTTATTTG
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
20 1 0.03
21 33 0.85
22 5 0.13
ACGTcount: A:0.34, C:0.43, G:0.00, T:0.23
Consensus pattern (20 bp):
CCCTAATCACTAACTCTAAC
Found at i:22768951 original size:7 final size:7
Alignment explanation
Indices: 22768941--22768992 Score: 59
Period size: 7 Copynumber: 7.4 Consensus size: 7
22768931 CACTAACTCT
*
22768941 TAACCTC
1 TAACCCC
*
22768948 TAACCAC
1 TAACCCC
22768955 TAACCCC
1 TAACCCC
22768962 TAACCCC
1 TAACCCC
*
22768969 TAATCCC
1 TAACCCC
**
22768976 TAACTAC
1 TAACCCC
22768983 TAACCCC
1 TAACCCC
22768990 TAA
1 TAA
22768993 ATCTTATTTG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.35, C:0.44, G:0.00, T:0.21
Consensus pattern (7 bp):
TAACCCC
Found at i:22768958 original size:14 final size:14
Alignment explanation
Indices: 22768941--22768992 Score: 68
Period size: 14 Copynumber: 3.7 Consensus size: 14
22768931 CACTAACTCT
*
22768941 TAACCTCTAACCAC
1 TAACCCCTAACCAC
*
22768955 TAACCCCTAACCCC
1 TAACCCCTAACCAC
* *
22768969 TAATCCCTAACTAC
1 TAACCCCTAACCAC
22768983 TAACCCCTAA
1 TAACCCCTAA
22768993 ATCTTATTTG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.35, C:0.44, G:0.00, T:0.21
Consensus pattern (14 bp):
TAACCCCTAACCAC
Found at i:22769173 original size:340 final size:339
Alignment explanation
Indices: 22768471--22769459 Score: 1792
Period size: 333 Copynumber: 3.0 Consensus size: 339
22768461 AATAATAAAA
22768471 CATAAACCTTAAACCCCTAACCCCTCTTTTACAATTATATAAAAACTTAATTAATATATGAATTA
1 CATAAACCTTAAACCCCTAACCCCTCTTTTACAATTATATAAAAACTTAATTAATATATGAATTA
*
22768536 AAAAATACTAATTAATCTAAACCTTAAACCTTAACCCGACCTCAAATCTTTAAACCTTAAATCAC
66 AAAAATACTAATTAATCTAAACCTTAAACCTTAACCCGACCTCAAATCTTTAAACCCTAAATCAC
* *
22768601 TAACTCTTAACCCCTAACCTCTAACCCCTAACCCCTAATCCCTAACTACTAACCCCTAAATCTTA
131 TAACTCTTAACCTCTAACCACTAACCCCTAACCCCTAATCCCTAACTACTAACCCCTAAATCTTA
22768666 TTTAATATATAAATTAAAAACACTAATTAATCTAGACCCTAAACCCT-AA-CCT-----AAATCC
196 TTTAATATATAAATTAAAAACACTAATTAATCTAGACCCTAAACCCTAAACCCTAACCCAAATCC
22768724 CTAACCCCTACACCTTATTCAATATAAATTAGAACACACTAATTAATCTAAACCCTAAACCCTAA
261 CTAACCCCTACACCTTATTCAATATAAATTAGAACACACTAATTAATCTAAACCCTAAACCCTAA
*
22768789 CATGACACTGAATT
326 CATGACACTAAATT
22768803 CATAAACCTTAAACCCCTAACCCCTCTTTTACAATTATATAAAAACTTAATTAATATATGAATTA
1 CATAAACCTTAAACCCCTAACCCCTCTTTTACAATTATATAAAAACTTAATTAATATATGAATT-
* *
22768868 AAAAAATACTAATTAATCTAAACCTTAAACCTTAACCCGGCCTTAAATCTTTAAACCCTAAATCA
65 AAAAAATACTAATTAATCTAAACCTTAAACCTTAACCCGACCTCAAATCTTTAAACCCTAAATCA
22768933 CTAACTCTTAACCTCTAACCACTAACCCCTAACCCCTAATCCCTAACTACTAACCCCTAAATCTT
130 CTAACTCTTAACCTCTAACCACTAACCCCTAACCCCTAATCCCTAACTACTAACCCCTAAATCTT
*
22768998 ATTTGATATATAAATTAAAAACACTAATTAATCTAGACCCTAAACCCTAAACCCTAACCCAAATC
195 ATTTAATATATAAATTAAAAACACTAATTAATCTAGACCCTAAACCCTAAACCCTAACCCAAATC
22769063 CCTAACCCCTACACCTTATTCAATATAAATTAGAACACACTAATTAATCTAAACCCTAAACCCTA
260 CCTAACCCCTACACCTTATTCAATATAAATTAGAACACACTAATTAATCTAAACCCTAAACCCTA
22769128 ACATGACACTAAATT
325 ACATGACACTAAATT
*
22769143 TATAAACCTTAAACCCCTAACCCCTCTTTTACAATTATATAAAAACTTAATTAATATATGAATTA
1 CATAAACCTTAAACCCCTAACCCCTCTTTTACAATTATATAAAAACTTAATTAATATATGAATTA
22769208 AAAAATACTAATTAATCTAAACCTTAAACCTTAACCCGACCTCAAATCTTTAAACCCTAAATCAC
66 AAAAATACTAATTAATCTAAACCTTAAACCTTAACCCGACCTCAAATCTTTAAACCCTAAATCAC
22769273 TAACTCTTAACCTCTAACCACTAACCCCTAACCCCTAATCCCTAACTACTAACCCCTAAATCTTA
131 TAACTCTTAACCTCTAACCACTAACCCCTAACCCCTAATCCCTAACTACTAACCCCTAAATCTTA
22769338 TTTAATATATAAATT-AAAACACTAATTAATCTAG-------ACCCTAAACCCTAACCCAAATCC
196 TTTAATATATAAATTAAAAACACTAATTAATCTAGACCCTAAACCCTAAACCCTAACCCAAATCC
22769395 CTAACCCCTACACCTTATTCAATATAAATTAGAACACACTAATTAATCTAAACCCTAAACCCTAA
261 CTAACCCCTACACCTTATTCAATATAAATTAGAACACACTAATTAATCTAAACCCTAAACCCTAA
22769460 ACCCTAACAT
Statistics
Matches: 638, Mismatches: 11, Indels: 17
0.96 0.02 0.03
Matches are distributed among these distances:
331 88 0.14
332 64 0.10
333 172 0.27
334 2 0.00
335 3 0.00
338 19 0.03
339 143 0.22
340 147 0.23
ACGTcount: A:0.42, C:0.28, G:0.02, T:0.28
Consensus pattern (339 bp):
CATAAACCTTAAACCCCTAACCCCTCTTTTACAATTATATAAAAACTTAATTAATATATGAATTA
AAAAATACTAATTAATCTAAACCTTAAACCTTAACCCGACCTCAAATCTTTAAACCCTAAATCAC
TAACTCTTAACCTCTAACCACTAACCCCTAACCCCTAATCCCTAACTACTAACCCCTAAATCTTA
TTTAATATATAAATTAAAAACACTAATTAATCTAGACCCTAAACCCTAAACCCTAACCCAAATCC
CTAACCCCTACACCTTATTCAATATAAATTAGAACACACTAATTAATCTAAACCCTAAACCCTAA
CATGACACTAAATT
Found at i:22769284 original size:21 final size:20
Alignment explanation
Indices: 22769262--22769331 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 20
22769252 AATCTTTAAA
22769262 CCCTAAATCACTAACTCTTAAC
1 CCCT-AATCACTAACTC-TAAC
* * *
22769284 CTCTAACCACTAACCCCTAAC
1 CCCTAATCACTAA-CTCTAAC
*
22769305 CCCTAATCCCTAACTACTAAC
1 CCCTAATCACTAACT-CTAAC
22769326 CCCTAA
1 CCCTAA
22769332 ATCTTATTTA
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
20 1 0.03
21 33 0.85
22 5 0.13
ACGTcount: A:0.34, C:0.43, G:0.00, T:0.23
Consensus pattern (20 bp):
CCCTAATCACTAACTCTAAC
Found at i:22769290 original size:7 final size:7
Alignment explanation
Indices: 22769280--22769331 Score: 59
Period size: 7 Copynumber: 7.4 Consensus size: 7
22769270 CACTAACTCT
*
22769280 TAACCTC
1 TAACCCC
*
22769287 TAACCAC
1 TAACCCC
22769294 TAACCCC
1 TAACCCC
22769301 TAACCCC
1 TAACCCC
*
22769308 TAATCCC
1 TAACCCC
**
22769315 TAACTAC
1 TAACCCC
22769322 TAACCCC
1 TAACCCC
22769329 TAA
1 TAA
22769332 ATCTTATTTA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.35, C:0.44, G:0.00, T:0.21
Consensus pattern (7 bp):
TAACCCC
Found at i:22769297 original size:14 final size:14
Alignment explanation
Indices: 22769280--22769331 Score: 68
Period size: 14 Copynumber: 3.7 Consensus size: 14
22769270 CACTAACTCT
*
22769280 TAACCTCTAACCAC
1 TAACCCCTAACCAC
*
22769294 TAACCCCTAACCCC
1 TAACCCCTAACCAC
* *
22769308 TAATCCCTAACTAC
1 TAACCCCTAACCAC
22769322 TAACCCCTAA
1 TAACCCCTAA
22769332 ATCTTATTTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.35, C:0.44, G:0.00, T:0.21
Consensus pattern (14 bp):
TAACCCCTAACCAC
Found at i:22769412 original size:74 final size:74
Alignment explanation
Indices: 22769321--22769459 Score: 210
Period size: 74 Copynumber: 1.9 Consensus size: 74
22769311 TCCCTAACTA
* *
22769321 CTAACCCCTAAATCTTATTTAATATATAAATTA-AA-ACACTAATTAATCTAGACCCTAAACCCT
1 CTAACCCCTAAACCTTA-TTAA-ATATAAATTAGAACACACTAATTAATCTAAACCCTAAACCCT
22769384 AACCCAAATCC
64 AACCCAAATCC
* *
22769395 CTAACCCCTACACCTTATTCAATATAAATTAGAACACACTAATTAATCTAAACCCTAAACCCTAA
1 CTAACCCCTAAACCTTATTAAATATAAATTAGAACACACTAATTAATCTAAACCCTAAACCCTAA
22769460 ACCCTAACAT
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
72 10 0.17
73 5 0.08
74 44 0.75
ACGTcount: A:0.43, C:0.28, G:0.01, T:0.27
Consensus pattern (74 bp):
CTAACCCCTAAACCTTATTAAATATAAATTAGAACACACTAATTAATCTAAACCCTAAACCCTAA
CCCAAATCC
Found at i:22769454 original size:7 final size:7
Alignment explanation
Indices: 22769442--22769466 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
22769432 ACTAATTAAT
22769442 CTAAACC
1 CTAAACC
22769449 CTAAACC
1 CTAAACC
22769456 CTAAACC
1 CTAAACC
22769463 CTAA
1 CTAA
22769467 CATGACACTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.40, G:0.00, T:0.16
Consensus pattern (7 bp):
CTAAACC
Found at i:22770181 original size:40 final size:41
Alignment explanation
Indices: 22770005--22770206 Score: 352
Period size: 41 Copynumber: 5.0 Consensus size: 41
22769995 TCAAAAACGG
*
22770005 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
1 GCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGGCCCGA
*
22770046 GCATTAGCGGCGCTTCCTCAAAAATGCCGCTAAAGGCCCGA
1 GCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGGCCCGA
22770087 GCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGGCCCGA
1 GCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGGCCCGA
*
22770128 GCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGG-CTGA
1 GCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGGCCCGA
**
22770168 GCATTAGCGGCGCTTATTCAAAAACGCCGCTAAAGGCCC
1 GCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGGCCC
22770207 CCAAAACCTA
Statistics
Matches: 153, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
40 37 0.24
41 116 0.76
ACGTcount: A:0.27, C:0.32, G:0.24, T:0.17
Consensus pattern (41 bp):
GCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGGCCCGA
Found at i:22770312 original size:39 final size:39
Alignment explanation
Indices: 22770249--22770375 Score: 166
Period size: 40 Copynumber: 3.2 Consensus size: 39
22770239 GGCTTTTTGC
**
22770249 GGCGCTTTTCAAAAAATGCCGCTAATGCTT-ATTTTTAGT
1 GGCG-TTTTCAAAAAGCGCCGCTAATGCTTGATTTTTAGT
** *
22770288 GGCGTTTTCCAAAAAGCGCCGCTAATGCTTGACCTTTAGC
1 GGCGTTTT-CAAAAAGCGCCGCTAATGCTTGATTTTTAGT
*
22770328 GGCGTTTTTATAAAAGCGCCGCTAATGCTTGATTTTTAGT
1 GGCGTTTTCA-AAAAGCGCCGCTAATGCTTGATTTTTAGT
22770368 GGCGTTTT
1 GGCGTTTT
22770376 TGCCCGAGCG
Statistics
Matches: 76, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
38 4 0.05
39 24 0.32
40 48 0.63
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (39 bp):
GGCGTTTTCAAAAAGCGCCGCTAATGCTTGATTTTTAGT
Found at i:22770386 original size:40 final size:39
Alignment explanation
Indices: 22770266--22770392 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
22770256 TTCAAAAAAT
22770266 GCCGCTAATGCTT-ATTTTTAGTGGCG-TTTTCCAAAAAGC
1 GCCGCTAATGCTTGATTTTTAGTGGCGTTTTTCC--AAAGC
** * **
22770305 GCCGCTAATGCTTGACCTTTAGCGGCGTTTTTATAAAAGC
1 GCCGCTAATGCTTGATTTTTAGTGGCGTTTTT-CCAAAGC
**
22770345 GCCGCTAATGCTTGATTTTTAGTGGCGTTTTTGCCCGAGC
1 GCCGCTAATGCTTGATTTTTAGTGGCGTTTTT-CCAAAGC
22770385 GCCGCTAA
1 GCCGCTAA
22770393 AAACGCCGCT
Statistics
Matches: 72, Mismatches: 13, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
39 13 0.18
40 55 0.76
41 4 0.06
ACGTcount: A:0.20, C:0.23, G:0.24, T:0.34
Consensus pattern (39 bp):
GCCGCTAATGCTTGATTTTTAGTGGCGTTTTTCCAAAGC
Found at i:22781486 original size:27 final size:27
Alignment explanation
Indices: 22781444--22781495 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
22781434 AAATGTGAAA
*
22781444 AGGGGTTGCTATGTGCTGATTCCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCCG
22781471 AGGGGTTGCTAAGTGCTGATTCCCC
1 AGGGGTTGCTAAGTGCTGATTCCCC
22781496 GGTTCATTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.13, C:0.25, G:0.33, T:0.29
Consensus pattern (27 bp):
AGGGGTTGCTAAGTGCTGATTCCCCCG
Found at i:22781610 original size:103 final size:103
Alignment explanation
Indices: 22781366--22781631 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 103
22781356 GTTGTACATA
** *
22781366 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* *
22781431 TTGAAATGTGAAAAGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAA-GTAAAAAGGGGTTGCTATGTGCTGATTCCCCC
* *
22781470 GAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
22781535 CTGAAA-TAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAAGTAAAAA-GGGGTTGCTATGTGCTGATTCCCCC
* * *
22781573 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
22781632 AATAACGGTT
Statistics
Matches: 149, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
102 5 0.03
103 79 0.53
104 65 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (103 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAAGTAAAAAGGGGTTGCTATGTGCTGATTCCCCC
Found at i:22784053 original size:21 final size:21
Alignment explanation
Indices: 22784029--22784083 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
22784019 GTGTCCCCTC
22784029 CACACGGGCGTGTGTGGCCTT
1 CACACGGGCGTGTGTGGCCTT
* *
22784050 CACACGGGCGTTTTTGGCCTT
1 CACACGGGCGTGTGTGGCCTT
*
22784071 CACATGGGCGTGT
1 CACACGGGCGTGT
22784084 AAACCCCTAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.11, C:0.27, G:0.35, T:0.27
Consensus pattern (21 bp):
CACACGGGCGTGTGTGGCCTT
Found at i:22786027 original size:14 final size:15
Alignment explanation
Indices: 22785993--22786037 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
22785983 ATTAGTCTCC
22785993 AATTATAATAAATAT
1 AATTATAATAAATAT
22786008 AA-TATAATAAATA-
1 AATTATAATAAATAT
*
22786021 AATTATAGTAAAATAT
1 AATTATAAT-AAATAT
22786037 A
1 A
22786038 CTTGAGATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 2 0.08
14 16 0.62
15 7 0.27
16 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (15 bp):
AATTATAATAAATAT
Found at i:22787609 original size:40 final size:40
Alignment explanation
Indices: 22787572--22787689 Score: 164
Period size: 40 Copynumber: 3.0 Consensus size: 40
22787562 ATAAAAAATA
* * *
22787572 CTGCTACAGATCGAGCATTAGTGGCGCTTTTTGAAAAACG
1 CTGCTATAGATCGACCATTAGCGGCGCTTTTTGAAAAACG
* *
22787612 CTGCTATAGATGGACCATTAGCGGTGCTTTTTGAAAAACG
1 CTGCTATAGATCGACCATTAGCGGCGCTTTTTGAAAAACG
* * *
22787652 CCGCTATAGGTTGACCATTAGCGGCGCTTTTTGAAAAA
1 CTGCTATAGATCGACCATTAGCGGCGCTTTTTGAAAAA
22787690 TGTCGCAAAA
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 69 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (40 bp):
CTGCTATAGATCGACCATTAGCGGCGCTTTTTGAAAAACG
Found at i:22787788 original size:154 final size:154
Alignment explanation
Indices: 22787586--22787946 Score: 492
Period size: 154 Copynumber: 2.3 Consensus size: 154
22787576 TACAGATCGA
* * * *
22787586 GCATTAGTGGCGCTTTTTGAAAAACGCTGCTATAGATGGACCATTAGCGGTGCTTTTTGAAAAAC
1 GCATTAGTGGC-CTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAAC
* * * * * *
22787651 GCCGCTATAGGTTGACCATTAGCGGCGCTTTTTGAAAAATGTCGCAAAAAAA-TAAGCACAATGT
65 GCCGCTATAGGTTGACCATTAGCGCCACTTTTTGAAAAACGCCGCAAAAAAATTAAGCACAACGC
22787715 CGTCT-TTTTATGTTGAGCTTTAGTG
130 CGT-TGTTTTATGTTGAGCTTTAGTG
22787740 GCATTAGTGGCACTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAAC
1 GCATTAGTGGC-CTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAAC
* *
22787805 GCTGCTATAGGTTGACCATTAGTGCCACTTTTTGAAAAACGCCGCAAAAAAATTAAGCACAACGC
65 GCCGCTATAGGTTGACCATTAGCGCCACTTTTTGAAAAACGCCGCAAAAAAATTAAGCACAACGC
*
22787870 CGTTGTTTTATGTTGAGTTTTAGTG
130 CGTTGTTTTATGTTGAGCTTTAGTG
* * ** * *
22787895 GCATTAGCAGTGCTTTTTTGAAAAATACCGTTATAGGTCGAGCATTAGCGGC
1 GCATTAG-TG-GCCTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGGC
22787947 ATTTCTTTAA
Statistics
Matches: 183, Mismatches: 20, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
154 107 0.58
155 39 0.21
156 35 0.19
157 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (154 bp):
GCATTAGTGGCCTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAACG
CCGCTATAGGTTGACCATTAGCGCCACTTTTTGAAAAACGCCGCAAAAAAATTAAGCACAACGCC
GTTGTTTTATGTTGAGCTTTAGTG
Found at i:22787796 original size:40 final size:40
Alignment explanation
Indices: 22787740--22787849 Score: 157
Period size: 40 Copynumber: 2.8 Consensus size: 40
22787730 AGCTTTAGTG
22787740 GCATTAGTGGCACTTTTTGAAAAACGCCGCTATAGATCGA
1 GCATTAGTGGCACTTTTTGAAAAACGCCGCTATAGATCGA
* * * * *
22787780 GCATTAGCGGCGCTTTTTGAAAAACGCTGCTATAGGTTGA
1 GCATTAGTGGCACTTTTTGAAAAACGCCGCTATAGATCGA
* *
22787820 CCATTAGTGCCACTTTTTGAAAAACGCCGC
1 GCATTAGTGGCACTTTTTGAAAAACGCCGC
22787850 AAAAAAATTA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (40 bp):
GCATTAGTGGCACTTTTTGAAAAACGCCGCTATAGATCGA
Found at i:22788417 original size:7 final size:7
Alignment explanation
Indices: 22788405--22788589 Score: 79
Period size: 7 Copynumber: 25.9 Consensus size: 7
22788395 TATCATTATA
22788405 GTTTAGG
1 GTTTAGG
22788412 GTTTAGG
1 GTTTAGG
*
22788419 GTTTATG
1 GTTTAGG
*
22788426 GTTTAAG
1 GTTTAGG
*
22788433 GTTTAGAA
1 GTTTAG-G
22788441 GTTACTA--
1 GTT--TAGG
* *
22788448 TTTTAAG
1 GTTTAGG
* *
22788455 GTTCATG
1 GTTTAGG
*
22788462 GATTATGG
1 GTTTA-GG
22788470 GTTTAGG
1 GTTTAGG
* *
22788477 GATTATG
1 GTTTAGG
*
22788484 GTTTATG
1 GTTTAGG
*
22788491 GTTTATG
1 GTTTAGG
*
22788498 GTTTATG
1 GTTTAGG
* *
22788505 GTGTATG
1 GTTTAGG
* *
22788512 GTGTATG
1 GTTTAGG
22788519 GTTTACGG
1 GTTTA-GG
22788527 GTTTAGG
1 GTTTAGG
22788534 GTTTAGG
1 GTTTAGG
* *
22788541 ATTTATG
1 GTTTAGG
*
22788548 ATTTAGGG
1 GTTTA-GG
*
22788556 GTTAAGG
1 GTTTAGG
22788563 G-TTAGGG
1 GTTTA-GG
* *
22788570 GATAAGG
1 GTTTAGG
22788577 GTTTAGG
1 GTTTAGG
22788584 GTTTAG
1 GTTTAG
22788590 ATTAATTAGT
Statistics
Matches: 141, Mismatches: 27, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
5 2 0.01
6 2 0.01
7 115 0.82
8 20 0.14
10 2 0.01
ACGTcount: A:0.21, C:0.02, G:0.35, T:0.43
Consensus pattern (7 bp):
GTTTAGG
Found at i:22788428 original size:14 final size:14
Alignment explanation
Indices: 22788400--22788588 Score: 94
Period size: 14 Copynumber: 13.2 Consensus size: 14
22788390 TTAATTATCA
*
22788400 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
* *
22788414 TTAGGGTTTATGGT
1 TTATGGTTTAGGGT
* *
22788428 TTAAGGTTTAGAAGT
1 TTATGGTTTAG-GGT
*
22788443 TACTAT--TTTAAGGT
1 T--TATGGTTTAGGGT
* *
22788457 TCATGGATTATGGGT
1 TTATGGTTTA-GGGT
* * *
22788472 TTAGGGATTATGGT
1 TTATGGTTTAGGGT
*
22788486 TTATGGTTTATGGT
1 TTATGGTTTAGGGT
* *
22788500 TTATGGTGTATGGT
1 TTATGGTTTAGGGT
*
22788514 GTATGGTTTACGGGT
1 TTATGGTTTA-GGGT
* *
22788529 TTAGGGTTTAGGAT
1 TTATGGTTTAGGGT
* *
22788543 TTATGATTTAGGGG
1 TTATGGTTTAGGGT
* * *
22788557 TTAAGGGTTAGGGGA
1 TTATGGTTTA-GGGT
* *
22788572 TAAGGGTTTAGGGT
1 TTATGGTTTAGGGT
22788586 TTA
1 TTA
22788589 GATTAATTAG
Statistics
Matches: 130, Mismatches: 37, Indels: 16
0.71 0.20 0.09
Matches are distributed among these distances:
12 2 0.02
14 87 0.67
15 39 0.30
17 2 0.02
ACGTcount: A:0.21, C:0.02, G:0.33, T:0.44
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:22788429 original size:21 final size:21
Alignment explanation
Indices: 22788400--22788589 Score: 89
Period size: 21 Copynumber: 8.9 Consensus size: 21
22788390 TTAATTATCA
*
22788400 TTATAGTTTAGGGTTTAGGGT
1 TTATGGTTTAGGGTTTAGGGT
* *
22788421 TTATGGTTTAAGGTTTAGAAGT
1 TTATGGTTTAGGGTTTAG-GGT
* * * *
22788443 TACTAT--TTTAAGGTTCATGGA
1 T--TATGGTTTAGGGTTTAGGGT
* *
22788464 TTATGGGTTTAGGGATTATGGT
1 TTAT-GGTTTAGGGTTTAGGGT
* *
22788486 TTATGGTTTATGGTTTATGGT
1 TTATGGTTTAGGGTTTAGGGT
* * *
22788507 GTATGGTGTATGGTTTACGGGT
1 TTATGGTTTAGGGTTTA-GGGT
* * * *
22788529 TTAGGGTTTAGGATTTATGAT
1 TTATGGTTTAGGGTTTAGGGT
* * *
22788550 TTAGGGGTTAAGGG-TTAGGGGA
1 TTA-TGGTTTAGGGTTTA-GGGT
* *
22788572 TAAGGGTTTAGGGTTTAG
1 TTATGGTTTAGGGTTTAG
22788590 ATTAATTAGT
Statistics
Matches: 129, Mismatches: 30, Indels: 20
0.72 0.17 0.11
Matches are distributed among these distances:
19 3 0.02
21 66 0.51
22 57 0.44
24 3 0.02
ACGTcount: A:0.21, C:0.02, G:0.34, T:0.44
Consensus pattern (21 bp):
TTATGGTTTAGGGTTTAGGGT
Found at i:22794833 original size:25 final size:25
Alignment explanation
Indices: 22794805--22794915 Score: 98
Period size: 25 Copynumber: 4.4 Consensus size: 25
22794795 CACAGCTCTT
*
22794805 ATGAGCTTCCCCATATTTAGCTCGC
1 ATGAGCTTCCCCATATTCAGCTCGC
** ** *
22794830 ATGAGCTTCCTGATATTTGGCTTGC
1 ATGAGCTTCCCCATATTCAGCTCGC
** * *
22794855 ATGAGCTTCCCGTTATACAGCTTGC
1 ATGAGCTTCCCCATATTCAGCTCGC
*
22794880 ATGAGCTT-CCCATTATTCAGCTCGG
1 ATGAGCTTCCCCA-TATTCAGCTCGC
*
22794905 AGGAGCTTCCC
1 ATGAGCTTCCC
22794916 GTTTACAGCT
Statistics
Matches: 69, Mismatches: 15, Indels: 3
0.79 0.17 0.03
Matches are distributed among these distances:
24 2 0.03
25 65 0.94
26 2 0.03
ACGTcount: A:0.19, C:0.28, G:0.21, T:0.32
Consensus pattern (25 bp):
ATGAGCTTCCCCATATTCAGCTCGC
Found at i:22800739 original size:15 final size:16
Alignment explanation
Indices: 22800712--22800776 Score: 60
Period size: 16 Copynumber: 3.9 Consensus size: 16
22800702 TAATTTATTC
22800712 TTTTAATTATTTTTTA
1 TTTTAATTATTTTTTA
22800728 TTTTAA-TATTTTTTTA
1 TTTTAATTA-TTTTTTA
* * * *
22800744 TCTTATATAATATATTAA
1 TTTTA-ATTAT-TTTTTA
22800762 TTTTAATTATTTTTT
1 TTTTAATTATTTTTT
22800777 CTGAAATAAT
Statistics
Matches: 37, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
15 2 0.05
16 20 0.54
17 6 0.16
18 9 0.24
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTAATTATTTTTTA
Found at i:22808291 original size:12 final size:12
Alignment explanation
Indices: 22808270--22808303 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
22808260 TATATTTTTT
*
22808270 AAAATTATATAA
1 AAAATAATATAA
22808282 AAAATAATATAA
1 AAAATAATATAA
*
22808294 AAATTAATAT
1 AAAATAATAT
22808304 GGGCGGGCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:22809032 original size:3 final size:3
Alignment explanation
Indices: 22809024--22809067 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
22809014 TCATTAGTGT
22809024 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
22809068 TGGTATAAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:22812101 original size:20 final size:22
Alignment explanation
Indices: 22812064--22812103 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
22812054 TTTGGTATCG
22812064 TTTTTAAGAAAGGTATCGATTA
1 TTTTTAAGAAAGGTATCGATTA
22812086 TTTTTAA-AAA-GTATCGAT
1 TTTTTAAGAAAGGTATCGAT
22812104 ACCGAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.44
21 3 0.17
22 7 0.39
ACGTcount: A:0.38, C:0.05, G:0.15, T:0.42
Consensus pattern (22 bp):
TTTTTAAGAAAGGTATCGATTA
Found at i:22812297 original size:20 final size:20
Alignment explanation
Indices: 22812266--22812328 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
22812256 TGAAAATCAT
*
22812266 TTAAAATGATTTTAACTTGA
1 TTAAAATCATTTTAACTTGA
* * *
22812286 TTGAAATCATTTTGACTTGG
1 TTAAAATCATTTTAACTTGA
*
22812306 TTAAAATCATTTGCAACTTGA
1 TTAAAATCATTT-TAACTTGA
22812327 TT
1 TT
22812329 TTAAAATTGT
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
20 27 0.79
21 7 0.21
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.44
Consensus pattern (20 bp):
TTAAAATCATTTTAACTTGA
Found at i:22813716 original size:3 final size:3
Alignment explanation
Indices: 22813708--22813764 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
22813698 AAAGCCCTAG
22813708 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
22813756 GAA GAA GAA
1 GAA GAA GAA
22813765 AAAAACCAAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:22821155 original size:24 final size:23
Alignment explanation
Indices: 22821085--22821170 Score: 66
Period size: 24 Copynumber: 3.5 Consensus size: 23
22821075 ATATAAGTTG
*
22821085 AAGTAATTATAATACAAAATATTA
1 AAGTAATTATAATACAAAAT-TAA
* * * *
22821109 AAG-ATTTACTAATAGATAGTTAA
1 AAGTAATTA-TAATACAAAATTAA
22821132 AAGTTAATTATAATACAAAATTAA
1 AAG-TAATTATAATACAAAATTAA
22821156 ACCAGTACATTATAA
1 A--AGTA-ATTATAA
22821171 GTAGGTTAGA
Statistics
Matches: 47, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
23 9 0.19
24 23 0.49
25 6 0.13
26 9 0.19
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (23 bp):
AAGTAATTATAATACAAAATTAA
Found at i:22821606 original size:14 final size:14
Alignment explanation
Indices: 22821589--22821622 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
22821579 TCATCATTTG
22821589 CCTATAACCAAAAC
1 CCTATAACCAAAAC
22821603 CCTATAACCAAAAC
1 CCTATAACCAAAAC
22821617 CC-ATAA
1 CCTATAA
22821623 ACTCATACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.50, C:0.35, G:0.00, T:0.15
Consensus pattern (14 bp):
CCTATAACCAAAAC
Found at i:22821736 original size:9 final size:9
Alignment explanation
Indices: 22821722--22821751 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
22821712 GAAGAGAATG
22821722 GAAAATAAA
1 GAAAATAAA
22821731 GAAAATAAA
1 GAAAATAAA
22821740 GAAAATAAA
1 GAAAATAAA
22821749 GAA
1 GAA
22821752 TTAAATTGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (9 bp):
GAAAATAAA
Found at i:22822140 original size:5 final size:5
Alignment explanation
Indices: 22822130--22822161 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
22822120 TAAGAATAGA
22822130 GGGTT GGGTT GGGTT GGGTT GGGTT GGGTT GG
1 GGGTT GGGTT GGGTT GGGTT GGGTT GGGTT GG
22822162 TGTCCAAGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.62, T:0.38
Consensus pattern (5 bp):
GGGTT
Found at i:22822264 original size:14 final size:14
Alignment explanation
Indices: 22822245--22822273 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
22822235 GCAGAGCCGA
22822245 AGGGAGAGGGAGAG
1 AGGGAGAGGGAGAG
22822259 AGGGAGAGGGAGAG
1 AGGGAGAGGGAGAG
22822273 A
1 A
22822274 AGAAGCTCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (14 bp):
AGGGAGAGGGAGAG
Found at i:22823004 original size:12 final size:12
Alignment explanation
Indices: 22822987--22823013 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
22822977 TACATAATAC
22822987 ATATAATATAAT
1 ATATAATATAAT
22822999 ATATAATATAAT
1 ATATAATATAAT
22823011 ATA
1 ATA
22823014 CCTCTATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATAATATAAT
Found at i:22826520 original size:51 final size:53
Alignment explanation
Indices: 22826464--22826738 Score: 257
Period size: 51 Copynumber: 5.3 Consensus size: 53
22826454 TCTCGTAGCT
* *
22826464 TCCTCTTCCTCTTCCCTCCTCCGAGCATC-C-TCTTCCTCTCTCCTTCTGGCC
1 TCCTCTTCCTCTTCCCTCCTCCTAGCTTCTCTTCTTCCTCTCTCCTTCTGGCC
* * * *
22826515 TCCTCTTCCTCTT--C-CCTCCTAGCTTCTTCTTCCTCCTCTCTCCTCCTAGCT
1 TCCTCTTCCTCTTCCCTCCTCCTAGCTTC-TCTTCTTCCTCTCTCCTTCTGGCC
* * * * *
22826566 TCTTCTTCCTCCTCTCTCCTCCTAGCTTCTTCTTCCTCCTCTCTCCTCCTGGCC
1 TCCTCTTCCTCTTCCCTCCTCCTAGCTTC-TCTTCTTCCTCTCTCCTTCTGGCC
* * * * *
22826620 T-CT-TT-TTCTTCTCTTCTCTTAGCTTCTTCCTCTTCCTCTCTCCTTCTGGCC
1 TCCTCTTCCTCTTCCCTCCTCCTAGCTTC-TCTTCTTCCTCTCTCCTTCTGGCC
* * * *
22826671 TCCTC-T--TCTTCCTTTCTCTTAGCTTCTTCGTCTTCCTCTCTCCTTCTGGCC
1 TCCTCTTCCTCTTCCCTCCTCCTAGCTTC-TCTTCTTCCTCTCTCCTTCTGGCC
22826722 TCCTCTTCCTCTTCCCT
1 TCCTCTTCCTCTTCCCT
22826739 TCTCTTTTGG
Statistics
Matches: 191, Mismatches: 22, Indels: 19
0.82 0.09 0.08
Matches are distributed among these distances:
48 10 0.05
49 1 0.01
50 1 0.01
51 128 0.67
52 6 0.03
53 2 0.01
54 43 0.23
ACGTcount: A:0.03, C:0.47, G:0.06, T:0.45
Consensus pattern (53 bp):
TCCTCTTCCTCTTCCCTCCTCCTAGCTTCTCTTCTTCCTCTCTCCTTCTGGCC
Found at i:22826615 original size:27 final size:27
Alignment explanation
Indices: 22826459--22826732 Score: 203
Period size: 27 Copynumber: 10.6 Consensus size: 27
22826449 TCCCTTCTCG
* * *
22826459 TAGCTTCCTCTTCCTCTTCCCTCCTCC
1 TAGCTTCTTCTTCCTCCTCTCTCCTCC
* * * *
22826486 GAGCATC--C-TCTTCCTCTCTCCTTC
1 TAGCTTCTTCTTCCTCCTCTCTCCTCC
* * *
22826510 TGGCCTCCTCTTCCT-CT-TC-CCTCC
1 TAGCTTCTTCTTCCTCCTCTCTCCTCC
22826534 TAGCTTCTTCTTCCTCCTCTCTCCTCC
1 TAGCTTCTTCTTCCTCCTCTCTCCTCC
22826561 TAGCTTCTTCTTCCTCCTCTCTCCTCC
1 TAGCTTCTTCTTCCTCCTCTCTCCTCC
22826588 TAGCTTCTTCTTCCTCCTCTCTCCTCC
1 TAGCTTCTTCTTCCTCCTCTCTCCTCC
* * * * *
22826615 TGGCCTCTT-TT--TCTTCTCTTCTCT
1 TAGCTTCTTCTTCCTCCTCTCTCCTCC
* * *
22826639 TAGCTTCTTCCTCTTCCTCTCTCCTTC
1 TAGCTTCTTCTTCCTCCTCTCTCCTCC
* * * * *
22826666 TGGCCTCCTCTTCTTCCT-T-T-CTCT
1 TAGCTTCTTCTTCCTCCTCTCTCCTCC
* * *
22826690 TAGCTTCTTCGTCTTCCTCTCTCCTTC
1 TAGCTTCTTCTTCCTCCTCTCTCCTCC
* * *
22826717 TGGCCTCCTCTTCCTC
1 TAGCTTCTTCTTCCTC
22826733 TTCCCTTCTC
Statistics
Matches: 192, Mismatches: 43, Indels: 24
0.74 0.17 0.09
Matches are distributed among these distances:
24 65 0.34
25 8 0.04
26 9 0.05
27 110 0.57
ACGTcount: A:0.03, C:0.46, G:0.06, T:0.45
Consensus pattern (27 bp):
TAGCTTCTTCTTCCTCCTCTCTCCTCC
Found at i:22826733 original size:81 final size:78
Alignment explanation
Indices: 22826491--22826789 Score: 242
Period size: 78 Copynumber: 3.8 Consensus size: 78
22826481 CCTCCGAGCA
22826491 TCCTCTTCCTCTCTCCTTCTGGCCTCCTCTTCCTCTTC-CCTCCTAGCTTCTTCTTCCTCCTCTC
1 TCCTCTTCCTCTCTCCTTCTGGCCTCCTCTTCCTCTTCTCCTCCTAGCTTCTTC-TCCTCCTCTC
*
22826555 TCCTCCTAGCTTCT
65 TCCTTCTAGCTTCT
* * * * * * * * * *
22826569 TCTTCCTCCTCTCTCCTCCTAGCTTCTTCTTCCTCCTCTCTCCTCCTGGCCTCTT-T-TTCTTCT
1 TCCTCTTCCTCTCTCCTTCTGGCCTCCTCTTCCT-CT-TCTCCTCCTAGCTTCTTCTCCTCCTCT
*
22826632 CTTC-TCTTAGCTTCT
64 CTCCTTC-TAGCTTCT
* * *
22826647 TCCTCTTCCTCTCTCCTTCTGGCCTCCTCTTCTTCCTT-T-CTCTTAGCTTCTTCGTCTTCCTCT
1 TCCTCTTCCTCTCTCCTTCTGGCCTCCTCTTCCT-CTTCTCCTCCTAGCTTCTTC-TCCTCCTCT
*
22826710 CTCCTTCTGGCCTCCTCT
64 CTCCTTCTAG-CT--TCT
* * * *
22826728 TCCTCTTCC-CT-TCTCTTTTGGGCCTCTTCTTCTTCTT-TCCTCTTAGCTTC-T-TCCTCCTCT
1 TCCTCTTCCTCTCTC-CTTCT-GGCCTCCTCTTCCTCTTCTCCTCCTAGCTTCTTCTCCTCCTCT
22826788 CT
64 CT
22826790 TCTCTTTCTG
Statistics
Matches: 179, Mismatches: 28, Indels: 28
0.76 0.12 0.12
Matches are distributed among these distances:
75 10 0.06
76 1 0.01
77 3 0.02
78 95 0.53
79 9 0.05
80 13 0.07
81 48 0.27
ACGTcount: A:0.02, C:0.44, G:0.06, T:0.47
Consensus pattern (78 bp):
TCCTCTTCCTCTCTCCTTCTGGCCTCCTCTTCCTCTTCTCCTCCTAGCTTCTTCTCCTCCTCTCT
CCTTCTAGCTTCT
Found at i:22826735 original size:30 final size:31
Alignment explanation
Indices: 22826695--22826771 Score: 79
Period size: 30 Copynumber: 2.5 Consensus size: 31
22826685 TCTCTTAGCT
*
22826695 TCTTCGTCTTCCTC-TCTCCTTCT-GGCCTCC
1 TCTTCCTCTTCCTCTTCT-CTTCTGGGCCTCC
* *
22826725 TCTTCCTCTTCC-CTTCTCTTTTGGGCCTCT
1 TCTTCCTCTTCCTCTTCTCTTCTGGGCCTCC
*
22826755 TCTTCTTCTTTCCTCTT
1 TCTTCCTC-TTCCTCTT
22826772 AGCTTCTTCC
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
29 5 0.13
30 27 0.69
31 4 0.10
32 3 0.08
ACGTcount: A:0.00, C:0.42, G:0.08, T:0.51
Consensus pattern (31 bp):
TCTTCCTCTTCCTCTTCTCTTCTGGGCCTCC
Found at i:22826756 original size:51 final size:49
Alignment explanation
Indices: 22826602--22826756 Score: 141
Period size: 51 Copynumber: 3.0 Consensus size: 49
22826592 TTCTTCTTCC
* * * * **
22826602 TCCTCTCTCCTCCTGGCCTCTTTTTCTTCTCTTCTCTTAGCTTCTTCCTCT
1 TCCTCTCTCCTTCTGGCCTCCTCTTCTTCCCTTCTCTTA--TTCGGCCTCT
* ** *
22826653 TCCTCTCTCCTTCTGGCCTCCTCTTCTTCCTTTCTCTTAGCTTCTTCGTCT
1 TCCTCTCTCCTTCTGGCCTCCTCTTCTTCCCTTCTCTTA--TTCGGCCTCT
*
22826704 TCCTCTCTCCTTCTGGCCTCCTCTTCCTCTTCCCTTCTCTT-TTGGGCCTCT
1 TCCTCTCTCCTTCTGGCCTCCTC-T--TCTTCCCTTCTCTTATTCGGCCTCT
22826755 TC
1 TC
22826757 TTCTTCTTTC
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
51 76 0.84
52 1 0.01
54 13 0.14
ACGTcount: A:0.01, C:0.43, G:0.08, T:0.48
Consensus pattern (49 bp):
TCCTCTCTCCTTCTGGCCTCCTCTTCTTCCCTTCTCTTATTCGGCCTCT
Found at i:22826792 original size:51 final size:53
Alignment explanation
Indices: 22826725--22826849 Score: 143
Period size: 51 Copynumber: 2.4 Consensus size: 53
22826715 TCTGGCCTCC
* * *
22826725 TCTTCCTCTTCCCTTCTCTTT-TGGGCCTCTTCTT-CT-TCTTTCCTCTTAGCT
1 TCTTCCTCCTCCCTTCTCTTTCT-GGCCTCCTCTTCCTCTCTTTCCTCCTAGCT
* *
22826776 TCTTCCTCCTCTCTTCTCTTTCTGGCCTCCTCTTCCTCCTCTTTCCTCCTGGCT
1 TCTTCCTCCTCCCTTCTCTTTCTGGCCTCCTCTTCCT-CTCTTTCCTCCTAGCT
*
22826830 TCTTCCT-CTTCCTTC-CTTTC
1 TCTTCCTCCTCCCTTCTCTTTC
22826850 CCTTTCAATT
Statistics
Matches: 63, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
51 29 0.46
52 8 0.13
53 6 0.10
54 20 0.32
ACGTcount: A:0.01, C:0.42, G:0.06, T:0.50
Consensus pattern (53 bp):
TCTTCCTCCTCCCTTCTCTTTCTGGCCTCCTCTTCCTCTCTTTCCTCCTAGCT
Found at i:22826827 original size:27 final size:27
Alignment explanation
Indices: 22826464--22826850 Score: 121
Period size: 27 Copynumber: 14.7 Consensus size: 27
22826454 TCTCGTAGCT
* ** *
22826464 TCCTCTTCCTCTTCCCTCCTCC-GAGCA
1 TCCTCTTCCTCCTCTTTCCTCCTG-GCC
*
22826491 TCCTCTTCCT-CTC--TCCTTCTGGCC
1 TCCTCTTCCTCCTCTTTCCTCCTGGCC
* * *
22826515 TCCTC-T--TCCTCTTCCCTCCTAGCT
1 TCCTCTTCCTCCTCTTTCCTCCTGGCC
* * * *
22826539 TCTTCTTCCTCCTCTCTCCTCCTAGCT
1 TCCTCTTCCTCCTCTTTCCTCCTGGCC
* * * *
22826566 TCTTCTTCCTCCTCTCTCCTCCTAGCT
1 TCCTCTTCCTCCTCTTTCCTCCTGGCC
* *
22826593 TCTTCTTCCTCCTCTCTCCTCCTGGCC
1 TCCTCTTCCTCCTCTTTCCTCCTGGCC
* * * * * *
22826620 T-CTTTTTCTTCTC-TT-CTCTTAGCT
1 TCCTCTTCCTCCTCTTTCCTCCTGGCC
* * * * *
22826644 TCTTCCTCTTCCTCTCTCCTTCTGGCC
1 TCCTCTTCCTCCTCTTTCCTCCTGGCC
* * * *
22826671 TCCTCTT-CTTC-CTTT-CTCTTAGCT
1 TCCTCTTCCTCCTCTTTCCTCCTGGCC
* * * * *
22826695 TCTTCGTCTTCCTCTCTCCTTCTGGCC
1 TCCTCTTCCTCCTCTTTCCTCCTGGCC
* * **
22826722 TCCTCTTCCTCTTCCCTTCTCTTTTGGGCC
1 TCCTCTTCCTCCT-CTTTC-CTCCT-GGCC
* * *
22826752 TCTTCTT-CT--TCTTTCCTCTTAG-C
1 TCCTCTTCCTCCTCTTTCCTCCTGGCC
*
22826775 T--TCTTCCTCCTCTCTTCTCTTTCTGGCC
1 TCCTCTTCCTCCTCT-TTC-C-TCCTGGCC
22826803 TCCTCTTCCTCCTCTTTCCTCCTGGCTTC
1 TCCTCTTCCTCCTCTTTCCTCCTGGC--C
*
22826832 TTCCTCTTCCTTC-CTTTCC
1 -TCCTCTTCCTCCTCTTTCC
22826851 CTTTCAATTT
Statistics
Matches: 267, Mismatches: 65, Indels: 54
0.69 0.17 0.14
Matches are distributed among these distances:
21 5 0.02
22 5 0.02
23 3 0.01
24 44 0.16
25 21 0.08
26 21 0.08
27 113 0.42
28 6 0.02
29 16 0.06
30 33 0.12
ACGTcount: A:0.02, C:0.45, G:0.06, T:0.47
Consensus pattern (27 bp):
TCCTCTTCCTCCTCTTTCCTCCTGGCC
Found at i:22826864 original size:132 final size:132
Alignment explanation
Indices: 22826557--22826842 Score: 314
Period size: 132 Copynumber: 2.2 Consensus size: 132
22826547 CTCCTCTCTC
* * * * * * * **
22826557 CTCCTAGCTTCTTCTTCCTCCTCTCTCCTCCTAG-CTTCTTCTTCCTCCTCTC-TC-CTCCT-GG
1 CTCCTAGCTTCTTCCTCTTCCTCTCTCCTTCT-GCCCTCATCTTCCTCTTCCCTTCTCTTTTGGG
* * *
22826618 CCTCTTTTTCTTCTCTTCTCTTAGCTTCTTCCTCTTCCTCTCTCCTTCTGGCCTCCTCTTCTTCC
65 CCTCTTCTTCTTCTCTTCTCTTAGCTTCTTCCTCCTCCTCTCTCCTTCTGGCCTCCTCTTCTCCC
22826683 TTT
130 TTT
* * * *
22826686 CTCTTAGCTTCTTCGTCTTCCTCTCTCCTTCTGGCCTCCTCTTCCTCTTCCCTTCTCTTTTGGGC
1 CTCCTAGCTTCTTCCTCTTCCTCTCTCCTTCTGCCCTCATCTTCCTCTTCCCTTCTCTTTTGGGC
*
22826751 CTCTTCTTCTTCT-TTCCTCTTAGCTTCTTCCTCCT-CTCTTCTCTTTCTGGCCTCCTCTTCCTC
66 CTCTTCTTCTTCTCTT-CTCTTAGCTTCTTCCTCCTCCTC-TCTCCTTCTGGCCTCCTCTT-CTC
22826814 CTCTTT
128 C-CTTT
*
22826820 CCTCCTGGCTTCTTCCTCTTCCT
1 -CTCCTAGCTTCTTCCTCTTCCT
22826843 TCCTTTCCCT
Statistics
Matches: 131, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
128 1 0.01
129 42 0.32
130 2 0.02
131 8 0.06
132 52 0.40
133 3 0.02
134 4 0.03
135 19 0.15
ACGTcount: A:0.02, C:0.43, G:0.07, T:0.48
Consensus pattern (132 bp):
CTCCTAGCTTCTTCCTCTTCCTCTCTCCTTCTGCCCTCATCTTCCTCTTCCCTTCTCTTTTGGGC
CTCTTCTTCTTCTCTTCTCTTAGCTTCTTCCTCCTCCTCTCTCCTTCTGGCCTCCTCTTCTCCCT
TT
Found at i:22833182 original size:3 final size:3
Alignment explanation
Indices: 22833174--22833204 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
22833164 GAACAAATTT
22833174 GAA GAA GAA GAA GAA GAA GAAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA G-AA GAA GAA GAA
22833205 AGAAAGACCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:22833199 original size:10 final size:10
Alignment explanation
Indices: 22833175--22833208 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
22833165 AACAAATTTG
22833175 AAGAAGAAG-
1 AAGAAGAAGA
22833184 AAGAAGAAGA
1 AAGAAGAAGA
22833194 AAGAAGAAGA
1 AAGAAGAAGA
22833204 AAGAA
1 AAGAA
22833209 AGACCAGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 9 0.38
10 15 0.62
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (10 bp):
AAGAAGAAGA
Found at i:22836480 original size:114 final size:114
Alignment explanation
Indices: 22836277--22836683 Score: 654
Period size: 114 Copynumber: 3.6 Consensus size: 114
22836267 AACTACGCAA
* *
22836277 TTCCACTGCAGTTCACATACACGTGGCTCTAACAACATCTAAATGTAATTAGAATCGATCGCAAA
1 TTCCACTGCAGTCCACATACACGTGGCGCTAACAACATCTAAATGTAATTAGAATCGATCGCAAA
22836342 TTGATTTGG-TGATGAGTCCTTTAACCGTCAACTATGCTATTAACAAAGG
66 TTGA-TTGGATGATGAGTCCTTTAACCGTCAACTATGCTATTAACAAAGG
22836391 TTCCACTGCAGTCCACATACACGTGGCGCTAACAACATCTAAATGTAATTAGAATCGATCGCAAA
1 TTCCACTGCAGTCCACATACACGTGGCGCTAACAACATCTAAATGTAATTAGAATCGATCGCAAA
* **
22836456 TTGATTGGATGATGAGTCCCTTAACCGTCAACTGCGCTATTAACAAAGG
66 TTGATTGGATGATGAGTCCTTTAACCGTCAACTATGCTATTAACAAAGG
* * *
22836505 TTCCACTGCAGTCCACATACACGTGGCACTAACAACATCTAAATGTAATTAGAATCTATCACAAA
1 TTCCACTGCAGTCCACATACACGTGGCGCTAACAACATCTAAATGTAATTAGAATCGATCGCAAA
* * *
22836570 TCGATTGGATGATGAGTCCTTTAACCGTCAACTATGCTATGAACAAAGA
66 TTGATTGGATGATGAGTCCTTTAACCGTCAACTATGCTATTAACAAAGG
* * * * *
22836619 TTCAACTGCAGTCCACATACACGCGGCGCTAACAACATCTAAATGTAGTTACAATCGATCTCAAA
1 TTCCACTGCAGTCCACATACACGTGGCGCTAACAACATCTAAATGTAATTAGAATCGATCGCAAA
22836684 ATCTTTTAAT
Statistics
Matches: 271, Mismatches: 21, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
113 4 0.01
114 267 0.99
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (114 bp):
TTCCACTGCAGTCCACATACACGTGGCGCTAACAACATCTAAATGTAATTAGAATCGATCGCAAA
TTGATTGGATGATGAGTCCTTTAACCGTCAACTATGCTATTAACAAAGG
Found at i:22842053 original size:41 final size:41
Alignment explanation
Indices: 22841991--22842161 Score: 270
Period size: 41 Copynumber: 4.2 Consensus size: 41
22841981 GTTTGGAATT
* * *
22841991 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATCTAAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
*
22842032 GGTGATCTAAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTAAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* * *
22842073 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATCTAAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
*
22842114 GGTGATCTAAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTAAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
22842155 GGTGATC
1 GGTGATC
22842162 CGAATATGAT
Statistics
Matches: 118, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 118 1.00
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.23
Consensus pattern (41 bp):
GGTGATCTAAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
Found at i:22842128 original size:82 final size:82
Alignment explanation
Indices: 22841991--22842160 Score: 340
Period size: 82 Copynumber: 2.1 Consensus size: 82
22841981 GTTTGGAATT
22841991 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGCTATAAGC
1 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGCTATAAGC
22842056 CTAGCAGGCTAAGTGCC
66 CTAGCAGGCTAAGTGCC
22842073 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGCTATAAGC
1 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGCTATAAGC
22842138 CTAGCAGGCTAAGTGCC
66 CTAGCAGGCTAAGTGCC
22842155 GGTGAT
1 GGTGAT
22842161 CCGAATATGA
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 88 1.00
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.24
Consensus pattern (82 bp):
GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGCTATAAGC
CTAGCAGGCTAAGTGCC
Found at i:22849705 original size:41 final size:41
Alignment explanation
Indices: 22849643--22849813 Score: 261
Period size: 41 Copynumber: 4.2 Consensus size: 41
22849633 GTTTGGAATT
* * *
22849643 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATCTAAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
*
22849684 GGTGATCTAAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTAAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* * *
22849725 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATCTAAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
22849766 GGTGATCTAAATCAGGCTGTAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTAAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
22849807 GGTGATC
1 GGTGATC
22849814 CGAATATGAT
Statistics
Matches: 117, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 117 1.00
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (41 bp):
GGTGATCTAAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
Found at i:22849780 original size:82 final size:82
Alignment explanation
Indices: 22849643--22849812 Score: 331
Period size: 82 Copynumber: 2.1 Consensus size: 82
22849633 GTTTGGAATT
22849643 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGCTATAAGC
1 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGCTATAAGC
22849708 CTAGCAGGCTAAGTGCC
66 CTAGCAGGCTAAGTGCC
*
22849725 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGCTGTAAGC
1 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGCTATAAGC
22849790 CTAGCAGGCTAAGTGCC
66 CTAGCAGGCTAAGTGCC
22849807 GGTGAT
1 GGTGAT
22849813 CCGAATATGA
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 87 1.00
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (82 bp):
GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGCTATAAGC
CTAGCAGGCTAAGTGCC
Found at i:22852414 original size:21 final size:21
Alignment explanation
Indices: 22852342--22852508 Score: 148
Period size: 21 Copynumber: 8.2 Consensus size: 21
22852332 ATACGCCAAT
22852342 AGAAGCTCG-AA-AGTTGAAC
1 AGAAGCTCGTAAGAGTTGAAC
* * *
22852361 AGAAGCTCTTAAGAGCTAAAC
1 AGAAGCTCGTAAGAGTTGAAC
* *
22852382 ATAAACTC---AGAGTTGAAC
1 AGAAGCTCGTAAGAGTTGAAC
* *
22852400 AGAAGCTCGTAAGAGTTGGAT
1 AGAAGCTCGTAAGAGTTGAAC
* *
22852421 AGAAACTCATAAGAGTTGAAC
1 AGAAGCTCGTAAGAGTTGAAC
22852442 AGAAGCTCGTAAGAGCTT-AAC
1 AGAAGCTCGTAAGAG-TTGAAC
* * *
22852463 AGAAACTCATAATAGTTGAAC
1 AGAAGCTCGTAAGAGTTGAAC
* * *
22852484 AGAAGCTCGAAAGAGCTAAAC
1 AGAAGCTCGTAAGAGTTGAAC
22852505 AGAA
1 AGAA
22852509 AGTAAAACAT
Statistics
Matches: 115, Mismatches: 26, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
18 14 0.12
19 8 0.07
20 4 0.03
21 87 0.76
22 2 0.02
ACGTcount: A:0.44, C:0.16, G:0.22, T:0.19
Consensus pattern (21 bp):
AGAAGCTCGTAAGAGTTGAAC
Found at i:22852446 original size:42 final size:42
Alignment explanation
Indices: 22852353--22852509 Score: 205
Period size: 42 Copynumber: 3.8 Consensus size: 42
22852343 GAAGCTCGAA
* * *
22852353 AGTTGAACAGAAGCTCTTAAGAGCTAAACATAAACTC---AG
1 AGTTGAACAGAAGCTCGTAAGAGCTTAACAGAAACTCATAAG
* *
22852392 AGTTGAACAGAAGCTCGTAAGAG-TTGGATAGAAACTCATAAG
1 AGTTGAACAGAAGCTCGTAAGAGCTT-AACAGAAACTCATAAG
*
22852434 AGTTGAACAGAAGCTCGTAAGAGCTTAACAGAAACTCATAAT
1 AGTTGAACAGAAGCTCGTAAGAGCTTAACAGAAACTCATAAG
* *
22852476 AGTTGAACAGAAGCTCGAAAGAGCTAAACAGAAA
1 AGTTGAACAGAAGCTCGTAAGAGCTTAACAGAAA
22852510 GTAAAACATG
Statistics
Matches: 103, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
38 1 0.01
39 30 0.29
42 70 0.68
43 2 0.02
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.19
Consensus pattern (42 bp):
AGTTGAACAGAAGCTCGTAAGAGCTTAACAGAAACTCATAAG
Found at i:22855603 original size:16 final size:15
Alignment explanation
Indices: 22855582--22855615 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
22855572 ATTTCAATTA
22855582 ATAATAAATAATAAAT
1 ATAATAAAT-ATAAAT
*
22855598 ATAATAAATTTAAAT
1 ATAATAAATATAAAT
22855613 ATA
1 ATA
22855616 CTTAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
ATAATAAATATAAAT
Found at i:22856117 original size:12 final size:12
Alignment explanation
Indices: 22856100--22856124 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22856090 TCTTTACGTG
22856100 TCTGTATATTAT
1 TCTGTATATTAT
22856112 TCTGTATATTAT
1 TCTGTATATTAT
22856124 T
1 T
22856125 TTATATAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.08, T:0.60
Consensus pattern (12 bp):
TCTGTATATTAT
Found at i:22856430 original size:13 final size:13
Alignment explanation
Indices: 22856412--22856473 Score: 60
Period size: 13 Copynumber: 4.9 Consensus size: 13
22856402 ATTTTAAACA
*
22856412 TATTTAAATTTAT
1 TATTTAATTTTAT
22856425 TATTT-ATTATTA-
1 TATTTAATT-TTAT
22856437 TATTTAATTTTAT
1 TATTTAATTTTAT
*
22856450 TA-TTAATTATT-C
1 TATTTAATT-TTAT
22856462 TATTTAATTTTA
1 TATTTAATTTTA
22856474 GAAATTATCT
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
12 20 0.49
13 21 0.51
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.65
Consensus pattern (13 bp):
TATTTAATTTTAT
Found at i:22856440 original size:25 final size:25
Alignment explanation
Indices: 22856411--22856473 Score: 99
Period size: 25 Copynumber: 2.5 Consensus size: 25
22856401 AATTTTAAAC
* *
22856411 ATATTTAAATTTATTATTTATTATT
1 ATATTTAATTTTATTATTAATTATT
22856436 ATATTTAATTTTATTATTAATTATT
1 ATATTTAATTTTATTATTAATTATT
*
22856461 CTATTTAATTTTA
1 ATATTTAATTTTA
22856474 GAAATTATCT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (25 bp):
ATATTTAATTTTATTATTAATTATT
Found at i:22857683 original size:24 final size:22
Alignment explanation
Indices: 22857656--22857699 Score: 52
Period size: 24 Copynumber: 1.9 Consensus size: 22
22857646 ATAATTTTAA
*
22857656 TTTACTATAATTGTATATTAAATG
1 TTTACTAAAATT-T-TATTAAATG
*
22857680 TTTATTAAAATTTTATTAAA
1 TTTACTAAAATTTTATTAAA
22857700 ATCATTTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 7 0.39
23 1 0.06
24 10 0.56
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (22 bp):
TTTACTAAAATTTTATTAAATG
Found at i:22859017 original size:30 final size:29
Alignment explanation
Indices: 22858983--22859067 Score: 73
Period size: 33 Copynumber: 2.7 Consensus size: 29
22858973 TTAATTGTAA
*
22858983 TTAAATTAAAATAAAAATATAATAAA-ATTT
1 TTAAATTAAAATAAAAATA-AA-AAATAATT
22859013 TTAAAAATATAAAATAATATAATAAAAAATAATT
1 TT--AAAT-TAAAATAA-A-AATAAAAAATAATT
*
22859047 TTATAATTAAAATTAAAATAA
1 TTA-AATTAAAATAAAAATAA
22859068 CGGAAATTGT
Statistics
Matches: 46, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
30 7 0.15
31 1 0.02
32 12 0.26
33 14 0.30
34 8 0.17
35 4 0.09
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (29 bp):
TTAAATTAAAATAAAAATAAAAAATAATT
Found at i:22862613 original size:42 final size:43
Alignment explanation
Indices: 22862565--22862650 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 43
22862555 GAAAATTGTG
*
22862565 CAAAAATAGAAAATATGC-AAACAAAACACACAAAGATAAAAT
1 CAAAAATAGAAAATATGCAAAAAAAAACACACAAAGATAAAAT
*
22862607 CAAAAATAGAAAATATGCAAAAAAAAACACACAAAGATGAAAT
1 CAAAAATAGAAAATATGCAAAAAAAAACACACAAAGATAAAAT
22862650 C
1 C
22862651 TATGTACACC
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
42 18 0.44
43 23 0.56
ACGTcount: A:0.66, C:0.14, G:0.08, T:0.12
Consensus pattern (43 bp):
CAAAAATAGAAAATATGCAAAAAAAAACACACAAAGATAAAAT
Found at i:22862633 original size:21 final size:22
Alignment explanation
Indices: 22862566--22862633 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 22
22862556 AAAATTGTGC
22862566 AAAAATAGAAAATATGCAAACA
1 AAAAATAGAAAATATGCAAACA
* * *
22862588 AAACACACAAAGATA---AAATC-
1 AAAAATAGAAA-ATATGCAAA-CA
22862608 AAAAATAGAAAATATGCAAA-A
1 AAAAATAGAAAATATGCAAACA
22862629 AAAAA
1 AAAAA
22862634 CACACAAAGA
Statistics
Matches: 34, Mismatches: 6, Indels: 13
0.64 0.11 0.25
Matches are distributed among these distances:
19 3 0.09
20 11 0.32
21 6 0.18
22 11 0.32
23 3 0.09
ACGTcount: A:0.71, C:0.10, G:0.07, T:0.12
Consensus pattern (22 bp):
AAAAATAGAAAATATGCAAACA
Found at i:22869497 original size:24 final size:24
Alignment explanation
Indices: 22869470--22869517 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
22869460 AGACAAGCTT
*
22869470 CCATGTAGGTTGTGGACGAAGCCA
1 CCATGTAGGTTGTAGACGAAGCCA
22869494 CCATGTAGGTTGTAGACGAAGCCA
1 CCATGTAGGTTGTAGACGAAGCCA
22869518 TCAATTATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (24 bp):
CCATGTAGGTTGTAGACGAAGCCA
Found at i:22875279 original size:27 final size:27
Alignment explanation
Indices: 22875240--22875490 Score: 203
Period size: 27 Copynumber: 9.3 Consensus size: 27
22875230 ATTCGTGGGC
*
22875240 AAATGACTA-AAATACCCTCGAAGGGAA
1 AAATGAC-AGAAATACCCTCGAAGGGTA
* *
22875267 AAATGACAGAAATACCCTCAAAAGGTA
1 AAATGACAGAAATACCCTCGAAGGGTA
* * *
22875294 AAATAACCA-AAATACCCTCAAAGGGAA
1 AAATGA-CAGAAATACCCTCGAAGGGTA
** *
22875321 AAATGATTGAAATACCC-CTGAAGGGTG
1 AAATGACAGAAATACCCTC-GAAGGGTA
* * *
22875348 AAATGACCA-AAACACTCTCAAAGGGTA
1 AAATGA-CAGAAATACCCTCGAAGGGTA
22875375 AAATGACCA-AAATACCCTCGAAGGGTA
1 AAATGA-CAGAAATACCCTCGAAGGGTA
*
22875402 AAACGATC-GAAATACCC-CTGAAGGGTA
1 AAATGA-CAGAAATACCCTC-GAAGGGTA
* * *
22875429 AAATGACTGAAATACCCCCGAAGGATAA
1 AAATGACAGAAATACCCTCGAAGGGT-A
**
22875457 AAATGATTGAAATACCCTC-ATAGGGTA
1 AAATGACAGAAATACCCTCGA-AGGGTA
22875484 AAATGAC
1 AAATGAC
22875491 TGTTATACCT
Statistics
Matches: 183, Mismatches: 29, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
26 4 0.02
27 153 0.84
28 26 0.14
ACGTcount: A:0.46, C:0.20, G:0.18, T:0.16
Consensus pattern (27 bp):
AAATGACAGAAATACCCTCGAAGGGTA
Found at i:22875333 original size:54 final size:54
Alignment explanation
Indices: 22875240--22875492 Score: 240
Period size: 54 Copynumber: 4.7 Consensus size: 54
22875230 ATTCGTGGGC
* * * * *
22875240 AAATGACTAAAATACCCTCGAAGGGAAAAATGACAGAAATACCCTCAAAAGGTA
1 AAATGACCAAAATACCCTCAAAGGGAAAAATGACTGAAATACCCTCGAAGGGTA
* * *
22875294 AAATAACCAAAATACCCTCAAAGGGAAAAATGATTGAAATACCC-CTGAAGGGTG
1 AAATGACCAAAATACCCTCAAAGGGAAAAATGACTGAAATACCCTC-GAAGGGTA
* * * **
22875348 AAATGACCAAAACACTCTCAAAGGGTAAAATGACCAAAATACCCTCGAAGGGTA
1 AAATGACCAAAATACCCTCAAAGGGAAAAATGACTGAAATACCCTCGAAGGGTA
* * * * * * *
22875402 AAACGATCGAAATACCC-CTGAAGGGTAAAATGACTGAAATACCCCCGAAGGATAA
1 AAATGACCAAAATACCCTC-AAAGGGAAAAATGACTGAAATACCCTCGAAGGGT-A
*** * *
22875457 AAATGATTGAAATACCCTCATAGGGTAAAATGACTG
1 AAATGACCAAAATACCCTCAAAGGGAAAAATGACTG
22875493 TTATACCTTT
Statistics
Matches: 164, Mismatches: 30, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
53 2 0.01
54 129 0.79
55 32 0.20
56 1 0.01
ACGTcount: A:0.46, C:0.19, G:0.18, T:0.17
Consensus pattern (54 bp):
AAATGACCAAAATACCCTCAAAGGGAAAAATGACTGAAATACCCTCGAAGGGTA
Found at i:22875375 original size:81 final size:82
Alignment explanation
Indices: 22875240--22875435 Score: 254
Period size: 81 Copynumber: 2.4 Consensus size: 82
22875230 ATTCGTGGGC
* * * *
22875240 AAATGACTAAAATA-CCCTCGAAGGGAAAAATGA-CAGAAATACCCTCAAAAGGTAAAATAACCA
1 AAATGATTGAAATACCCCT-GAAGGGTAAAATGACCAGAAACACCCTCAAAAGGTAAAATAACCA
22875303 AAATACCCTCAAAGGGAA
65 AAATACCCTCAAAGGGAA
* * * *
22875321 AAATGATTGAAATACCCCTGAAGGGTGAAATGACCA-AAACACTCTCAAAGGGTAAAATGACCAA
1 AAATGATTGAAATACCCCTGAAGGGTAAAATGACCAGAAACACCCTCAAAAGGTAAAATAACCAA
* *
22875385 AATACCCTCGAAGGGTA
66 AATACCCTCAAAGGGAA
* *
22875402 AAACGATCGAAATACCCCTGAAGGGTAAAATGAC
1 AAATGATTGAAATACCCCTGAAGGGTAAAATGAC
22875436 TGAAATACCC
Statistics
Matches: 100, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
81 94 0.94
82 6 0.06
ACGTcount: A:0.47, C:0.20, G:0.18, T:0.15
Consensus pattern (82 bp):
AAATGATTGAAATACCCCTGAAGGGTAAAATGACCAGAAACACCCTCAAAAGGTAAAATAACCAA
AATACCCTCAAAGGGAA
Found at i:22875458 original size:81 final size:79
Alignment explanation
Indices: 22875249--22875486 Score: 246
Period size: 81 Copynumber: 2.9 Consensus size: 79
22875239 CAAATGACTA
* * *
22875249 AAATA-CCCTCGAAGGGAAAAATGACAGAAATACCCTCAAAAGGTAAAATAACCAAAATACCCTC
1 AAATACCCCT-GAAGGGTAAAATGACAGAAATACCC-CCAAAGGTAAAATGACCAAAATACCCTC
* * *
22875313 AAAGGGAAAAATGATTG
64 -AAGGGTAAAACGATCG
* * * *
22875330 AAATACCCCTGAAGGGTGAAATGACCA-AAACACTCTCAAAGGGTAAAATGACCAAAATACCCTC
1 AAATACCCCTGAAGGGTAAAATGA-CAGAAATACCCCCAAA-GGTAAAATGACCAAAATACCCTC
22875394 GAAGGGTAAAACGATCG
64 -AAGGGTAAAACGATCG
* * ***
22875411 AAATACCCCTGAAGGGTAAAATGACTGAAATACCCCCGAAGGATAAAAATGATTGAAATACCCTC
1 AAATACCCCTGAAGGGTAAAATGACAGAAATACCCCCAAAGG-T-AAAATGACCAAAATACCCTC
22875476 ATAGGGTAAAA
64 A-AGGGTAAAA
22875487 TGACTGTTAT
Statistics
Matches: 130, Mismatches: 20, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
80 6 0.05
81 92 0.71
82 32 0.25
ACGTcount: A:0.46, C:0.20, G:0.18, T:0.16
Consensus pattern (79 bp):
AAATACCCCTGAAGGGTAAAATGACAGAAATACCCCCAAAGGTAAAATGACCAAAATACCCTCAA
GGGTAAAACGATCG
Found at i:22875910 original size:28 final size:28
Alignment explanation
Indices: 22875823--22875902 Score: 115
Period size: 28 Copynumber: 2.9 Consensus size: 28
22875813 ACTGTATTGT
*
22875823 ACTGCTACTGTATTGGGCTAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
22875851 ACTGTTACTGTATTGGGCTAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
** * *
22875879 ACTGTTGTTGTATAGGGCTCAGGC
1 ACTGTTACTGTATTGGGCTAAGGC
22875903 TCAGACTGCA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.29
Consensus pattern (28 bp):
ACTGTTACTGTATTGGGCTAAGGCCCAC
Found at i:22881423 original size:13 final size:13
Alignment explanation
Indices: 22881405--22881429 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22881395 AACTTATTTT
22881405 CTATCCCAAAATG
1 CTATCCCAAAATG
22881418 CTATCCCAAAAT
1 CTATCCCAAAAT
22881430 TCAAGCCAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.32, G:0.04, T:0.24
Consensus pattern (13 bp):
CTATCCCAAAATG
Found at i:22882013 original size:40 final size:40
Alignment explanation
Indices: 22881969--22882143 Score: 163
Period size: 40 Copynumber: 4.4 Consensus size: 40
22881959 ACACTGGCCC
* * *
22881969 AAAGCCTGCTAGGCACTAAGCCAGATA-ATTACACCGGCAT
1 AAAGCCTGCTAGGCATTAAGCCCGATATA-TACACAGGCAT
* * *
22882009 AAAGCTTGCTAGGCATTAAGCCCGATATATACACTGGCAC
1 AAAGCCTGCTAGGCATTAAGCCCGATATATACACAGGCAT
* * * *
22882049 GAAGCCCGCTAGGAATTAAGCCCGATATATACACATGCAT
1 AAAGCCTGCTAGGCATTAAGCCCGATATATACACAGGCAT
* ** * * * *
22882089 AAAGCCTGCTATGTTTTAAGCCCAATAGATACACCGGCAC
1 AAAGCCTGCTAGGCATTAAGCCCGATATATACACAGGCAT
* *
22882129 GAATCCTGCTAGGCA
1 AAAGCCTGCTAGGCA
22882144 CAAGGCTCGA
Statistics
Matches: 107, Mismatches: 27, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
40 106 0.99
41 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.21
Consensus pattern (40 bp):
AAAGCCTGCTAGGCATTAAGCCCGATATATACACAGGCAT
Found at i:22882091 original size:80 final size:80
Alignment explanation
Indices: 22881958--22882141 Score: 208
Period size: 80 Copynumber: 2.3 Consensus size: 80
22881948 TACAAATTTT
* * * * *
22881958 TACACTGGCCCAAAGCCTGCTAGGCACTAAGCCAGATAATTACACCGGCATAAAGCTTGCTAGGC
1 TACACTGGCACGAAGCCTGCTAGGAACTAAGCCAGATAATTACACAGGCATAAAGCCTGCTAGGC
* *
22882023 ATTAAGCCCGATATA
66 ATTAAGCCCAATAGA
* * * * *
22882038 TACACTGGCACGAAGCCCGCTAGGAATTAAGCCCGAT-ATATACACATGCATAAAGCCTGCTATG
1 TACACTGGCACGAAGCCTGCTAGGAACTAAGCCAGATAAT-TACACAGGCATAAAGCCTGCTAGG
**
22882102 TTTTAAGCCCAATAGA
65 CATTAAGCCCAATAGA
* *
22882118 TACACCGGCACGAATCCTGCTAGG
1 TACACTGGCACGAAGCCTGCTAGG
22882142 CACAAGGCTC
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (80 bp):
TACACTGGCACGAAGCCTGCTAGGAACTAAGCCAGATAATTACACAGGCATAAAGCCTGCTAGGC
ATTAAGCCCAATAGA
Found at i:22882846 original size:16 final size:16
Alignment explanation
Indices: 22882825--22882859 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
22882815 AGTCCTCGTA
22882825 ATTTTA-TCACTTTAAC
1 ATTTTAGTC-CTTTAAC
22882841 ATTTTAGTCCTTTAAC
1 ATTTTAGTCCTTTAAC
22882857 ATT
1 ATT
22882860 AAAAAATACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.29, C:0.17, G:0.03, T:0.51
Consensus pattern (16 bp):
ATTTTAGTCCTTTAAC
Found at i:22884586 original size:30 final size:30
Alignment explanation
Indices: 22884552--22884612 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
22884542 TTTACATCCC
22884552 TTTTACACATAACTGTAGCTTGTTTAATAG
1 TTTTACACATAACTGTAGCTTGTTTAATAG
22884582 TTTTACACATAACTGTAGCTTGTTTAATAG
1 TTTTACACATAACTGTAGCTTGTTTAATAG
22884612 T
1 T
22884613 AAATCAAAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.44
Consensus pattern (30 bp):
TTTTACACATAACTGTAGCTTGTTTAATAG
Found at i:22889418 original size:57 final size:59
Alignment explanation
Indices: 22889336--22889456 Score: 167
Period size: 57 Copynumber: 2.1 Consensus size: 59
22889326 ATTTTTAGGT
* *
22889336 CATTTTCATTTTTCATTTTGTAGAAAACCACATTCATTTCCAAATGGTTT-C-ATTTCTC
1 CATTTTCATTTTTCATTTTGGAGAAAACCACAATCATTTCCAAAT-GTTTCCTATTTCTC
**
22889394 CATTTTCA-TTTTCATTTTGGAGAAAACCTTAATCATTTCCAAATGTTTCCTATTTCTC
1 CATTTTCATTTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGTTTCCTATTTCTC
*
22889452 AATTT
1 CATTT
22889457 CACTATTTTT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
56 4 0.07
57 33 0.59
58 19 0.34
ACGTcount: A:0.26, C:0.20, G:0.07, T:0.47
Consensus pattern (59 bp):
CATTTTCATTTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGTTTCCTATTTCTC
Found at i:22892533 original size:22 final size:22
Alignment explanation
Indices: 22892508--22892554 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
22892498 CTAAGAGTCG
* * *
22892508 TAAACAGGATAGCTATAAGCTA
1 TAAACAGAATAGCTACAAGCCA
*
22892530 TAAACAGAATTGCTACAAGCCA
1 TAAACAGAATAGCTACAAGCCA
22892552 TAA
1 TAA
22892555 GTACAGTAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.47, C:0.17, G:0.15, T:0.21
Consensus pattern (22 bp):
TAAACAGAATAGCTACAAGCCA
Found at i:22892601 original size:32 final size:31
Alignment explanation
Indices: 22892546--22892676 Score: 95
Period size: 32 Copynumber: 4.1 Consensus size: 31
22892536 GAATTGCTAC
*
22892546 AAGCCATAAGTACAGTAATATGATTGGCACA
1 AAGCCATAAGTACAGTAATATGATCGGCACA
* *
22892577 AAGCCATTAGTAGCAGTGATATGATCGGCACA
1 AAGCCATAAGTA-CAGTAATATGATCGGCACA
* * * * * *
22892609 CAGCCACCAA-TAACGGTAATATGATTGACATA
1 AAGCCA-TAAGT-ACAGTAATATGATCGGCACA
** *
22892641 AAGCCATCGGTA-ACGATAATATGATAGGCACA
1 AAGCCATAAGTACA-G-TAATATGATCGGCACA
22892673 AAGC
1 AAGC
22892677 TATCAGTAGA
Statistics
Matches: 75, Mismatches: 19, Indels: 11
0.71 0.18 0.10
Matches are distributed among these distances:
31 13 0.17
32 60 0.80
33 2 0.03
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.21
Consensus pattern (31 bp):
AAGCCATAAGTACAGTAATATGATCGGCACA
Found at i:22892887 original size:24 final size:24
Alignment explanation
Indices: 22892856--22892961 Score: 131
Period size: 24 Copynumber: 4.4 Consensus size: 24
22892846 CCATGCTCAG
22892856 AATCAGTCATACAAATCACAGACA
1 AATCAGTCATACAAATCACAGACA
* *
22892880 AATCAGTCATACCAATCACAGATA
1 AATCAGTCATACAAATCACAGACA
**
22892904 AATCAGTCATTTAAATCACAGACA
1 AATCAGTCATACAAATCACAGACA
** * *
22892928 AATCAGTCATTTACATCACGGACA
1 AATCAGTCATACAAATCACAGACA
*
22892952 AATCAATCAT
1 AATCAGTCAT
22892962 TTACACTCGA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 73 1.00
ACGTcount: A:0.45, C:0.24, G:0.08, T:0.23
Consensus pattern (24 bp):
AATCAGTCATACAAATCACAGACA
Found at i:22893026 original size:27 final size:27
Alignment explanation
Indices: 22892982--22893209 Score: 167
Period size: 27 Copynumber: 8.5 Consensus size: 27
22892972 GGGGTAATAT
*
22892982 AGTCA-TTTACCCTCTAGGGGCATTAC
1 AGTCATTTTACCCTATAGGGGCATTAC
* * * *
22893008 GGTCATTTTACCTTATAGGGGTATTTC
1 AGTCATTTTACCCTATAGGGGCATTAC
* * *
22893035 AGTCATTTAACCCTATGGGGGTATTAC
1 AGTCATTTTACCCTATAGGGGCATTAC
* * * *
22893062 GGTCATTTTAACCTACAGGGGCGTTAC
1 AGTCATTTTACCCTATAGGGGCATTAC
* * * *
22893089 AGTCATTTTACCTTACAGGGGAATTTC
1 AGTCATTTTACCCTATAGGGGCATTAC
* * *
22893116 AGTCATTTTACCCTA-CGAGGGTATTTC
1 AGTCATTTTACCCTATAG-GGGCATTAC
* * *
22893143 AGTCATTTTACCC-ATCGAGGGTATTTC
1 AGTCATTTTACCCTATAG-GGGCATTAC
* * * *
22893170 GGCCATTTTACCC-ATCGAGGGCATTTC
1 AGTCATTTTACCCTATAG-GGGCATTAC
22893197 AGTCATTTTACCC
1 AGTCATTTTACCC
22893210 ATTGGGGGTA
Statistics
Matches: 168, Mismatches: 31, Indels: 5
0.82 0.15 0.02
Matches are distributed among these distances:
26 6 0.04
27 162 0.96
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.35
Consensus pattern (27 bp):
AGTCATTTTACCCTATAGGGGCATTAC
Found at i:22893210 original size:27 final size:27
Alignment explanation
Indices: 22893009--22893288 Score: 225
Period size: 27 Copynumber: 10.4 Consensus size: 27
22892999 GGGCATTACG
* *
22893009 GTCATTTTACCTTATAG-GGGTATTTCA
1 GTCATTTTACC-CATCGAGGGTATTTCA
* * * *
22893036 GTCATTTAACCCTAT-GGGGGTATTACG
1 GTCATTTTACCC-ATCGAGGGTATTTCA
* ** *
22893063 GTCATTTTAACC-TAC-AGGGGCGTTACA
1 GTCATTTTACCCAT-CGA-GGGTATTTCA
* *
22893090 GTCATTTTA-CCTTAC-AGGGGAATTTCA
1 GTCATTTTACCCAT-CGA-GGGTATTTCA
22893117 GTCATTTTACCC-TACGAGGGTATTTCA
1 GTCATTTTACCCAT-CGAGGGTATTTCA
*
22893144 GTCATTTTACCCATCGAGGGTATTTCG
1 GTCATTTTACCCATCGAGGGTATTTCA
* *
22893171 GCCATTTTACCCATCGAGGGCATTTCA
1 GTCATTTTACCCATCGAGGGTATTTCA
* * *
22893198 GTCATTTTACCCATTGGGGGTATTT-T
1 GTCATTTTACCCATCGAGGGTATTTCA
* *
22893224 GATAATTTTACCCATCGAGGGTATTTTA
1 G-TCATTTTACCCATCGAGGGTATTTCA
* *
22893252 GTTATTTTACCCATCGAGGGTATTTCG
1 GTCATTTTACCCATCGAGGGTATTTCA
*
22893279 GTTATTTTAC
1 GTCATTTTAC
22893289 AAATATTAGG
Statistics
Matches: 212, Mismatches: 30, Indels: 22
0.80 0.11 0.08
Matches are distributed among these distances:
25 1 0.00
26 4 0.02
27 202 0.95
28 5 0.02
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCCATCGAGGGTATTTCA
Found at i:22893457 original size:27 final size:27
Alignment explanation
Indices: 22893397--22893649 Score: 321
Period size: 27 Copynumber: 9.4 Consensus size: 27
22893387 CCCCAAAATA
*
22893397 GGTAAAATGATCGAAATACCCT-ATAG
1 GGTAAAATGACCGAAATACCCTCATAG
*
22893423 GGTAAAATGACCAAAATACCCTCATAG
1 GGTAAAATGACCGAAATACCCTCATAG
* *
22893450 GATAAAATGACCGAAATACCCTCATAA
1 GGTAAAATGACCGAAATACCCTCATAG
* *
22893477 AGTAAAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCTCATAG
*
22893504 GGTAAAATGATCGAAATA-CCTCCATAG
1 GGTAAAATGACCGAAATACCCT-CATAG
** *
22893531 GGTAAAATGACTAAAATACCTTCATAG
1 GGTAAAATGACCGAAATACCCTCATAG
** *
22893558 GGTAAAATGATAGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCTCATAG
* *
22893585 GGTAGAATGATCGAAATACCCTCATAG
1 GGTAAAATGACCGAAATACCCTCATAG
** *
22893612 GGTAAAATGACTAAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCTCATAG
22893639 GGTAAAATGAC
1 GGTAAAATGAC
22893650 TGTTATACCC
Statistics
Matches: 195, Mismatches: 29, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
26 22 0.11
27 171 0.88
28 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCTCATAG
Found at i:22893537 original size:81 final size:81
Alignment explanation
Indices: 22893397--22893649 Score: 357
Period size: 81 Copynumber: 3.1 Consensus size: 81
22893387 CCCCAAAATA
* * * * *
22893397 GGTAAAATGATCGAAATA-CCCTATAGGGTAAAATGACCAAAATACCCTCATAGGATAAAATGAC
1 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCTCATAGGGTAAAATGAC
** *
22893461 CGAAATACCCTCATAA
66 TAAAATACCCTCATAG
*
22893477 AGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATA-CCTCCATAGGGTAAAATGA
1 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCT-CATAGGGTAAAATGA
*
22893541 CTAAAATACCTTCATAG
65 CTAAAATACCCTCATAG
** *
22893558 GGTAAAATGATAGAAATACCCCCATAGGGTAGAATGATCGAAATACCCTCATAGGGTAAAATGAC
1 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCTCATAGGGTAAAATGAC
*
22893623 TAAAATACCCCCATAG
66 TAAAATACCCTCATAG
22893639 GGTAAAATGAC
1 GGTAAAATGAC
22893650 TGTTATACCC
Statistics
Matches: 153, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
80 19 0.12
81 131 0.86
82 3 0.02
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.20
Consensus pattern (81 bp):
GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCTCATAGGGTAAAATGAC
TAAAATACCCTCATAG
Found at i:22898182 original size:34 final size:34
Alignment explanation
Indices: 22898139--22898205 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
22898129 TAATTAAGTA
22898139 AAATTAAACTAAAAGAAAAACAAAAAGGTTGTCG
1 AAATTAAACTAAAAGAAAAACAAAAAGGTTGTCG
*
22898173 AAATTAAACTAAAAGAAAAACAAATAGGTTGTC
1 AAATTAAACTAAAAGAAAAACAAAAAGGTTGTC
22898206 ATCTTCTATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.58, C:0.09, G:0.13, T:0.19
Consensus pattern (34 bp):
AAATTAAACTAAAAGAAAAACAAAAAGGTTGTCG
Found at i:22901750 original size:23 final size:23
Alignment explanation
Indices: 22901723--22901773 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
22901713 TTTCTAAGAT
22901723 TAGTGACTCCCAAATCAATGACC
1 TAGTGACTCCCAAATCAATGACC
* *
22901746 TAGTGACTCTCGAATCAATGACC
1 TAGTGACTCCCAAATCAATGACC
22901769 TAGTG
1 TAGTG
22901774 GTCTATTGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (23 bp):
TAGTGACTCCCAAATCAATGACC
Found at i:22906997 original size:79 final size:82
Alignment explanation
Indices: 22906886--22907070 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
22906876 GCTACTCGTT
* * *
22906886 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
22906949 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
22906966 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
22907029 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
22907046 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
22907071 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:22907070 original size:40 final size:40
Alignment explanation
Indices: 22906867--22907070 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
22906857 CGAAATTTAA
** *
22906867 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
22906907 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
22906947 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
22906986 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
22907026 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
22907066 CCGGA
1 CCGGA
22907071 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:22927974 original size:18 final size:18
Alignment explanation
Indices: 22927951--22927985 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
22927941 GTGGAGATGA
*
22927951 AGATGAAGATAACGGTGG
1 AGATGAAGATAAAGGTGG
22927969 AGATGAAGATAAAGGTG
1 AGATGAAGATAAAGGTG
22927986 ACAATGGAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.03, G:0.37, T:0.17
Consensus pattern (18 bp):
AGATGAAGATAAAGGTGG
Found at i:22927993 original size:24 final size:24
Alignment explanation
Indices: 22927942--22927996 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
22927932 AAGTCGAGGG
* **
22927942 TGGAGATGAAGATGAAGATAACGG
1 TGGAGATGAAGATAAAGATAACAA
* *
22927966 TGGAGATGAAGATAAAGGTGACAA
1 TGGAGATGAAGATAAAGATAACAA
22927990 TGGAGAT
1 TGGAGAT
22927997 AAAAATGAGC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.42, C:0.04, G:0.36, T:0.18
Consensus pattern (24 bp):
TGGAGATGAAGATAAAGATAACAA
Found at i:22933769 original size:43 final size:43
Alignment explanation
Indices: 22933703--22933950 Score: 294
Period size: 43 Copynumber: 5.9 Consensus size: 43
22933693 CCTACGCAAT
** *
22933703 TATACTGGCATGCA-AGTGCATCATCGGATAAACTAAAGAAAA
1 TATACTGGCACACACAGTGCATCATCGGATAAACTGAAGAAAA
* * * * *
22933745 TATACTAGCACACACACTGCATCATCAGATATA-TCGAAGCAAA
1 TATACTGGCACACACAGTGCATCATCGGATAAACT-GAAGAAAA
* * * *
22933788 TATATTGGCACACATAGTGCATCATCGGATATACCGAAG----
1 TATACTGGCACACACAGTGCATCATCGGATAAACTGAAGAAAA
* * *
22933827 -CTACTGGCACACACAGTGCATCATCGGATATACTGAAGCAAA
1 TATACTGGCACACACAGTGCATCATCGGATAAACTGAAGAAAA
*
22933869 TATACTGGCACACACAGTGCATCATCGGATAAACTGAACAAAA
1 TATACTGGCACACACAGTGCATCATCGGATAAACTGAAGAAAA
22933912 TATACTGGCACACACAGTGCATCATCGGATAAACTGAAG
1 TATACTGGCACACACAGTGCATCATCGGATAAACTGAAG
22933951 TATAACCCGT
Statistics
Matches: 175, Mismatches: 23, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
38 34 0.19
42 12 0.07
43 129 0.74
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.21
Consensus pattern (43 bp):
TATACTGGCACACACAGTGCATCATCGGATAAACTGAAGAAAA
Found at i:22933849 original size:81 final size:81
Alignment explanation
Indices: 22933747--22933899 Score: 245
Period size: 81 Copynumber: 1.9 Consensus size: 81
22933737 AAAGAAAATA
* *
22933747 TACTAGCACACACACTGCATCATCAGATATA-TCGAAGCAAATATATTGGCACACATAGTGCATC
1 TACTAGCACACACACTGCATCATCAGATATACT-GAAGCAAATATACTGGCACACACAGTGCATC
22933811 ATCGGATATACCGAAGC
65 ATCGGATATACCGAAGC
* * *
22933828 TACTGGCACACACAGTGCATCATCGGATATACTGAAGCAAATATACTGGCACACACAGTGCATCA
1 TACTAGCACACACACTGCATCATCAGATATACTGAAGCAAATATACTGGCACACACAGTGCATCA
22933893 TCGGATA
66 TCGGATA
22933900 AACTGAACAA
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
81 65 0.98
82 1 0.02
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.22
Consensus pattern (81 bp):
TACTAGCACACACACTGCATCATCAGATATACTGAAGCAAATATACTGGCACACACAGTGCATCA
TCGGATATACCGAAGC
Found at i:22933870 original size:124 final size:124
Alignment explanation
Indices: 22933717--22933942 Score: 339
Period size: 124 Copynumber: 1.8 Consensus size: 124
22933707 CTGGCATGCA
*
22933717 AGTGCATCATCGGATAAACTAAAGAAAATATACTAGCACACACACTGCATCATCAGATATA-TCG
1 AGTGCATCATCGGATAAACTAAAGAAAATATACTAGCACACACACTGCATCATCAGATAAACT-G
* *
22933781 AAGC-AAATATATTGGCACACATAGTGCATCATCGGATATACCGAAGCTACTGGCACACAC
65 AA-CAAAATATACTGGCACACACAGTGCATCATCGGATATACCGAAGCTACTGGCACACAC
* * * * * *
22933841 AGTGCATCATCGGATATACTGAAGCAAATATACTGGCACACACAGTGCATCATCGGATAAACTGA
1 AGTGCATCATCGGATAAACTAAAGAAAATATACTAGCACACACACTGCATCATCAGATAAACTGA
22933906 ACAAAATATACTGGCACACACAGTGCATCATCGGATA
66 ACAAAATATACTGGCACACACAGTGCATCATCGGATA
22933943 AACTGAAGTA
Statistics
Matches: 91, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
123 1 0.01
124 89 0.98
125 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.17, T:0.21
Consensus pattern (124 bp):
AGTGCATCATCGGATAAACTAAAGAAAATATACTAGCACACACACTGCATCATCAGATAAACTGA
ACAAAATATACTGGCACACACAGTGCATCATCGGATATACCGAAGCTACTGGCACACAC
Found at i:22937231 original size:33 final size:34
Alignment explanation
Indices: 22937186--22937252 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
22937176 ACAGATAATC
* * *
22937186 TCAGTTTGGGCCTAA-GCCTTTTCAGTATCAGTA
1 TCAGTTTAGGCCTAATCCCATTTCAGTATCAGTA
22937219 TCAGTTTAGGCCTAATCCCATTTCAGTATCAGTA
1 TCAGTTTAGGCCTAATCCCATTTCAGTATCAGTA
22937253 AGCATTAGGG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 14 0.47
34 16 0.53
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (34 bp):
TCAGTTTAGGCCTAATCCCATTTCAGTATCAGTA
Found at i:22938665 original size:20 final size:20
Alignment explanation
Indices: 22938617--22938665 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
22938607 ATTTTTGATA
22938617 AACTTCCC-CCCAATCCCCT
1 AACTTCCCTCCCAATCCCCT
*
22938636 AACTT-TCTCCCATAT-CCCT
1 AACTTCCCTCCCA-ATCCCCT
22938655 AACTTCCCTCC
1 AACTTCCCTCC
22938666 TAAAAAATCT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
18 1 0.04
19 18 0.72
20 6 0.24
ACGTcount: A:0.20, C:0.51, G:0.00, T:0.29
Consensus pattern (20 bp):
AACTTCCCTCCCAATCCCCT
Found at i:22946055 original size:50 final size:49
Alignment explanation
Indices: 22945995--22946123 Score: 125
Period size: 50 Copynumber: 2.6 Consensus size: 49
22945985 TTGTGAGAGG
* * *
22945995 TCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC-
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCG-CAGGA-AACA
* * * * * ** **
22946045 TCTCATGTAAGACCATATCTGAGATATGACATTTGCAGTGCAGGAAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGCAGGAAACA
22946094 TCCCATGTAAGACCATGTCTGGGACATGGC
1 TCCCATGTAAGACCATGTCTGGGACATGGC
22946124 TTTGGAATGT
Statistics
Matches: 61, Mismatches: 17, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
48 3 0.05
49 28 0.46
50 30 0.49
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.22
Consensus pattern (49 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGCAGGAAACA
Found at i:22953572 original size:50 final size:50
Alignment explanation
Indices: 22953492--22953628 Score: 206
Period size: 50 Copynumber: 2.7 Consensus size: 50
22953482 ACTGAGGTTG
*
22953492 TGAGAGGTCCCACGTAAGACCATG-CATGGGACATGGCGTTGGTAT-CGAGA
1 TGAGAGGTCCCTCGTAAGACCATGTC-TGGGACATGGCGTTGGT-TCCGAGA
22953542 TGAGAGGTCCCTCGTAAGACCATGTCTGGGACATGGCGTTGGTTCCGAGA
1 TGAGAGGTCCCTCGTAAGACCATGTCTGGGACATGGCGTTGGTTCCGAGA
* * *
22953592 GGAGAGGTCCCTTGTAAGACCATGTCTAGGACATGGC
1 TGAGAGGTCCCTCGTAAGACCATGTCTGGGACATGGC
22953629 ATGGGCACCG
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
49 1 0.01
50 79 0.98
51 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.34, T:0.22
Consensus pattern (50 bp):
TGAGAGGTCCCTCGTAAGACCATGTCTGGGACATGGCGTTGGTTCCGAGA
Found at i:22953658 original size:50 final size:49
Alignment explanation
Indices: 22953604--22953726 Score: 142
Period size: 49 Copynumber: 2.5 Consensus size: 49
22953594 AGAGGTCCCT
* * *
22953604 TGTAAGACCATGTCTAGGACATGGCATGGGCACCG-ATATGAGAAC-TCTCA
1 TGTAAGACCATGTCTGGGACATGGCATGGGCA--GTACAGGA-AACATCTCA
* * **
22953654 TGTAAGACCATATCTGGGATATGGCATTTGCAGTACAGGAAACATCTCA
1 TGTAAGACCATGTCTGGGACATGGCATGGGCAGTACAGGAAACATCTCA
22953703 TGTAAGACCATGTCTGGGACATGG
1 TGTAAGACCATGTCTGGGACATGG
22953727 TTTTGGCATG
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
48 4 0.06
49 31 0.50
50 27 0.44
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (49 bp):
TGTAAGACCATGTCTGGGACATGGCATGGGCAGTACAGGAAACATCTCA
Found at i:22953963 original size:20 final size:20
Alignment explanation
Indices: 22953938--22953976 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
22953928 TGAGTTATTT
22953938 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
22953958 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
22953977 GAAGAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:22959832 original size:20 final size:20
Alignment explanation
Indices: 22959764--22959832 Score: 50
Period size: 20 Copynumber: 3.4 Consensus size: 20
22959754 TTTCTTTGCA
*
22959764 AAATATAAGTATCGATATTT
1 AAATAAAAGTATCGATATTT
** * **
22959784 ATTTTAGGGTATCGATATTT
1 AAATAAAAGTATCGATATTT
*
22959804 -TATGAAAAAGTATCGATATTT
1 AAAT--AAAAGTATCGATATTT
22959825 AAATAAAA
1 AAATAAAA
22959833 ATTGATACCA
Statistics
Matches: 35, Mismatches: 11, Indels: 6
0.67 0.21 0.12
Matches are distributed among these distances:
19 2 0.06
20 18 0.51
21 13 0.37
22 2 0.06
ACGTcount: A:0.43, C:0.04, G:0.13, T:0.39
Consensus pattern (20 bp):
AAATAAAAGTATCGATATTT
Found at i:22974904 original size:22 final size:21
Alignment explanation
Indices: 22974842--22974904 Score: 56
Period size: 22 Copynumber: 2.9 Consensus size: 21
22974832 GGAGGAAGTG
* *
22974842 TATGGCTTGTAGCCGTTCTGT
1 TATGGCTTTTAGTCGTTCTGT
* *
22974863 TCAAGGCTTATT-GTCTTTCTGCT
1 T-ATGGCTT-TTAGTCGTTCTG-T
22974886 TATGGCTTTTAGTCGTTCT
1 TATGGCTTTTAGTCGTTCT
22974905 ATTAACTGGC
Statistics
Matches: 32, Mismatches: 6, Indels: 7
0.71 0.13 0.16
Matches are distributed among these distances:
21 3 0.09
22 26 0.81
23 3 0.09
ACGTcount: A:0.11, C:0.19, G:0.22, T:0.48
Consensus pattern (21 bp):
TATGGCTTTTAGTCGTTCTGT
Found at i:22975047 original size:37 final size:37
Alignment explanation
Indices: 22975006--22975088 Score: 157
Period size: 37 Copynumber: 2.2 Consensus size: 37
22974996 GCTAAGCTTA
*
22975006 GTGTGTTGGCTAGGTGGGTCATTTTTATCCCCACATG
1 GTGTGTTGGCTAGGTGGGTCAATTTTATCCCCACATG
22975043 GTGTGTTGGCTAGGTGGGTCAATTTTATCCCCACATG
1 GTGTGTTGGCTAGGTGGGTCAATTTTATCCCCACATG
22975080 GTGTGTTGG
1 GTGTGTTGG
22975089 TTGGTACGGG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.13, C:0.17, G:0.33, T:0.37
Consensus pattern (37 bp):
GTGTGTTGGCTAGGTGGGTCAATTTTATCCCCACATG
Found at i:22978660 original size:120 final size:118
Alignment explanation
Indices: 22978385--22978677 Score: 333
Period size: 117 Copynumber: 2.5 Consensus size: 118
22978375 CAAATAGACG
* * * * *
22978385 TTTGTTTTTTATTTACTTAACAAATGGTCCCATTGT-CTTATTTTTTTGAGATTTTGGTATTGTA
1 TTTGTTTTTTATTTACTTAACAAATAGTCTCATTGTGTTTATTTTTTTGAGAGTTTGATATTGTA
*
22978449 GAAAGGATGTTAGGAAGAAAGGAAGCAAGTATCTTTTCTTTTAATATTGTTTT
66 GAAAGGATGTTAGGAAGAAAGGAAGCAAGTATCTTTTCTTTTAACATTGTTTT
* * *
22978502 TTTGTCTTTTATTTACTTAACAAATAGTTTCATTGTGTTTATTTTTTTGAGAGTTT-ATTTTGTA
1 TTTGTTTTTTATTTACTTAACAAATAGTCTCATTGTGTTTATTTTTTTGAGAGTTTGATATTGTA
* * * * *
22978566 GGAAGGGTGTTTGGAAGAAAGGAAGCAAGTATGTTTGTGTTTTTTTTAACA-T-TTTT
66 GAAAGGATGTTAGGAAGAAAGGAAGCAAGTA----TCT-TTTCTTTTAACATTGTTTT
* * * * * *
22978622 TTTGTTTTTTATGTACTTAATAGATTGTCTCATTGTGTTGAATTTTTTGAGAGTTT
1 TTTGTTTTTTATTTACTTAACAAATAGTCTCATTGTGTTTATTTTTTTGAGAGTTT
22978678 TAATTTTTAT
Statistics
Matches: 148, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
117 66 0.45
118 17 0.11
120 52 0.35
121 3 0.02
122 10 0.07
ACGTcount: A:0.24, C:0.06, G:0.19, T:0.51
Consensus pattern (118 bp):
TTTGTTTTTTATTTACTTAACAAATAGTCTCATTGTGTTTATTTTTTTGAGAGTTTGATATTGTA
GAAAGGATGTTAGGAAGAAAGGAAGCAAGTATCTTTTCTTTTAACATTGTTTT
Found at i:22986327 original size:28 final size:27
Alignment explanation
Indices: 22986291--22986349 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 27
22986281 TGTCTTTGTA
*
22986291 GTTTGTTCATTTAATCTCATCTTTTTTT
1 GTTTCTTCATTTAATCTCATC-TTTTTT
22986319 GTTTCTTCATTTAATCTCATCTTTTTT
1 GTTTCTTCATTTAATCTCATCTTTTTT
22986346 GTTT
1 GTTT
22986350 TTGCTTTGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 10 0.33
28 20 0.67
ACGTcount: A:0.14, C:0.15, G:0.07, T:0.64
Consensus pattern (27 bp):
GTTTCTTCATTTAATCTCATCTTTTTT
Found at i:22987349 original size:13 final size:13
Alignment explanation
Indices: 22987331--22987355 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22987321 CATATTTGTC
22987331 TCTTTTTTTTTCT
1 TCTTTTTTTTTCT
22987344 TCTTTTTTTTTC
1 TCTTTTTTTTTC
22987356 CATCAACTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (13 bp):
TCTTTTTTTTTCT
Found at i:22989766 original size:9 final size:9
Alignment explanation
Indices: 22989752--22989787 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
22989742 GGTTGCAAAA
22989752 AGGACGATG
1 AGGACGATG
*
22989761 AGGACGACG
1 AGGACGATG
22989770 AGGACGATG
1 AGGACGATG
*
22989779 AGGATGATG
1 AGGACGATG
22989788 TTTCTTCGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.33, C:0.11, G:0.44, T:0.11
Consensus pattern (9 bp):
AGGACGATG
Found at i:22990324 original size:21 final size:21
Alignment explanation
Indices: 22990306--22990367 Score: 72
Period size: 22 Copynumber: 3.0 Consensus size: 21
22990296 GAAATTAATT
22990306 ATTTTT-ATTTTTATTTTAAA
1 ATTTTTAATTTTTATTTTAAA
*
22990326 ATTTTTAATTTTTATATTTCAA
1 ATTTTTAATTTTTAT-TTTAAA
* * *
22990348 ATTTTAAAATTTAATTTTAA
1 ATTTTTAATTTTTATTTTAA
22990368 TTATTAGTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
20 6 0.17
21 12 0.34
22 17 0.49
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (21 bp):
ATTTTTAATTTTTATTTTAAA
Done.