Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 82 of 240
Found at i:25850586 original size:34 final size:34
Alignment explanation
Indices: 25850480--25850752 Score: 156
Period size: 34 Copynumber: 8.0 Consensus size: 34
25850470 CTTATATATA
25850480 AACTTACAT-AA-TACATAACTTACATAATA-AC
1 AACTTACATAAATTACATAACTTACATAATACAC
* * * *
25850511 TTACATA-ATAACA-TA-ATAACTTACATAATATAT
1 -AACTTACATAA-ATTACATAACTTACATAATACAC
* * * *
25850544 AGCCTACATAAATTGCATAACTCACATAATACAC
1 AACTTACATAAATTACATAACTTACATAATACAC
* * *
25850578 AACTTACATAACTTAAATAACTTACATAATACAT
1 AACTTACATAAATTACATAACTTACATAATACAC
*
25850612 AACTTACATTAATATTATACATAACTTACATAACT-TAC
1 AACTTACA-TAA-A-T-TACATAACTTACATAA-TACAC
* *
25850650 AACTTACAT--A--ACTTAA-TTACATTATACAC
1 AACTTACATAAATTACATAACTTACATAATACAC
* *
25850679 AACTTACATAACATACACAATACATAACTTACATAATATAT
1 AACTTACATAA-AT------TACATAACTTACATAATACAC
* * * *
25850720 TACTTACATAACTTACATAATTTACGTAATACA
1 AACTTACATAAATTACATAACTTACATAATACA
25850753 TAAATATATA
Statistics
Matches: 184, Mismatches: 33, Indels: 46
0.70 0.13 0.17
Matches are distributed among these distances:
28 1 0.01
29 18 0.10
30 5 0.03
31 2 0.01
32 25 0.14
33 9 0.05
34 68 0.37
35 3 0.02
37 2 0.01
38 24 0.13
39 1 0.01
40 6 0.03
41 20 0.11
ACGTcount: A:0.48, C:0.19, G:0.01, T:0.32
Consensus pattern (34 bp):
AACTTACATAAATTACATAACTTACATAATACAC
Found at i:25850597 original size:25 final size:25
Alignment explanation
Indices: 25850548--25850755 Score: 87
Period size: 25 Copynumber: 8.3 Consensus size: 25
25850538 ATATATAGCC
* * * *
25850548 TACATAAATTGCATAACTCACATAA
1 TACATAACTTACATAACTTAAATAA
*
25850573 TACACAACTTACATAACTTAAATAA
1 TACATAACTTACATAACTTAAATAA
25850598 CTTACATAA--TACATAACTTACATTAATATTA
1 --TACATAACTTACATAACTT--A--AATA--A
25850629 TACATAACTTACATAACTTACAACT--
1 TACATAACTTACATAACTTA-AA-TAA
* *
25850654 TACATAAC-T---TAA-TTACATTA
1 TACATAACTTACATAACTTAAATAA
* * * *
25850674 TACACAACTTACATAACATACACAA
1 TACATAACTTACATAACTTAAATAA
* *
25850699 TACATAACTTACATAA--TATATTACT
1 TACATAACTTACATAACTTA-AATA-A
* **
25850724 TACATAACTTACATAATTTACGTAA
1 TACATAACTTACATAACTTAAATAA
25850749 TACATAA
1 TACATAA
25850756 ATATATATCA
Statistics
Matches: 141, Mismatches: 20, Indels: 44
0.69 0.10 0.21
Matches are distributed among these distances:
18 1 0.01
19 1 0.01
20 10 0.07
21 4 0.03
23 2 0.01
24 5 0.04
25 81 0.57
26 2 0.01
27 9 0.06
28 2 0.01
29 13 0.09
31 11 0.08
ACGTcount: A:0.47, C:0.19, G:0.01, T:0.33
Consensus pattern (25 bp):
TACATAACTTACATAACTTAAATAA
Found at i:25856088 original size:21 final size:21
Alignment explanation
Indices: 25856062--25856112 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
25856052 CTACAACTTA
*
25856062 AAGCAGAGGCGGCAGTGAGGG
1 AAGCAGAGGCGGCAGTGAGAG
*
25856083 AAGCAGAGGCTGCAGTGAGAG
1 AAGCAGAGGCGGCAGTGAGAG
25856104 AAGCAGAGG
1 AAGCAGAGG
25856113 TTCAAAAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.33, C:0.14, G:0.47, T:0.06
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGTGAGAG
Found at i:25856761 original size:85 final size:85
Alignment explanation
Indices: 25856502--25856770 Score: 245
Period size: 85 Copynumber: 3.1 Consensus size: 85
25856492 TCATATTCTA
* * * * * * *
25856502 TAGCGGCGTTTGTGGAAAAAATCGCCGCTAAAGAACATGACCTTTAGCAGCGTTT-GTGGAAAAA
1 TAGCGGCGTTTGTGG-AGAAAGCGCCACTAAAGAACATGACCCTTAGCGGCGTTTCTTGG---GA
* * * *
25856566 AATGCCGTTAAAGAACATTACTTT
62 AGTGCCGCTAAAGAACATGACCTT
* * * * * *
25856590 TAGCGGCGTTTGTGGAGAAAGCGCCTCTAAAGAACATGAGCTTTAGCGGCGTTTCTTGGTATGCG
1 TAGCGGCGTTTGTGGAGAAAGCGCCACTAAAGAACATGACCCTTAGCGGCGTTTCTTGGGAAGTG
** **
25856655 CCGCTAAAGGTCATGTTCTT
66 CCGCTAAAGAACATGACCTT
* * * *
25856675 TAGCGGCGTTTGTTGTGAAAGCGCCACTAAAGAATATTACCCTTAGCGGCGTTT-TTGAGGAAGT
1 TAGCGGCGTTTGTGGAGAAAGCGCCACTAAAGAACATGACCCTTAGCGGCGTTTCTTG-GGAAGT
25856739 GCCGCTAAAGAACATGACCTT
65 GCCGCTAAAGAACATGACCTT
*
25856760 TAACGGCGTTT
1 TAGCGGCGTTT
25856771 ATTTCTGTAA
Statistics
Matches: 147, Mismatches: 32, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
84 3 0.02
85 92 0.63
87 34 0.23
88 18 0.12
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (85 bp):
TAGCGGCGTTTGTGGAGAAAGCGCCACTAAAGAACATGACCCTTAGCGGCGTTTCTTGGGAAGTG
CCGCTAAAGAACATGACCTT
Found at i:25856767 original size:42 final size:43
Alignment explanation
Indices: 25856502--25856770 Score: 245
Period size: 42 Copynumber: 6.3 Consensus size: 43
25856492 TCATATTCTA
* * *
25856502 TAGCGGCGTTTGTGGAAAAAATCGCCGCTAAAGAACATGACCTT
1 TAGCGGCGTTTGTTG-AGAAAGCGCCGCTAAAGAACATGACCTT
* * * ** * * *
25856546 TAGCAGCGTTTGTGGAAAAAAATGCCGTTAAAGAACATTACTTT
1 TAGCGGCGTTTGTTG-AGAAAGCGCCGCTAAAGAACATGACCTT
* * *
25856590 TAGCGGCGTTTGTGGAGAAAGCGCCTCTAAAGAACATGAGCTT
1 TAGCGGCGTTTGTTGAGAAAGCGCCGCTAAAGAACATGACCTT
* * * ** **
25856633 TAGCGGCGTTTCTTG-GTATGCGCCGCTAAAGGTCATGTTCTT
1 TAGCGGCGTTTGTTGAGAAAGCGCCGCTAAAGAACATGACCTT
* * * * *
25856675 TAGCGGCGTTTGTTGTGAAAGCGCCACTAAAGAATATTACCCT
1 TAGCGGCGTTTGTTGAGAAAGCGCCGCTAAAGAACATGACCTT
* *
25856718 TAGCGGCGTTT-TTGAGGAAGTGCCGCTAAAGAACATGACCTT
1 TAGCGGCGTTTGTTGAGAAAGCGCCGCTAAAGAACATGACCTT
*
25856760 TAACGGCGTTT
1 TAGCGGCGTTT
25856771 ATTTCTGTAA
Statistics
Matches: 181, Mismatches: 43, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
42 68 0.38
43 61 0.34
44 52 0.29
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (43 bp):
TAGCGGCGTTTGTTGAGAAAGCGCCGCTAAAGAACATGACCTT
Found at i:25860999 original size:20 final size:20
Alignment explanation
Indices: 25860969--25861046 Score: 97
Period size: 20 Copynumber: 3.9 Consensus size: 20
25860959 TAGTGCCAAT
*
25860969 AGAGACACCAAAGT-CTAAAC
1 AGAGGCACCAAAGTGC-AAAC
* *
25860989 AGAAGCACCAAAGTGCAACC
1 AGAGGCACCAAAGTGCAAAC
25861009 AGAGGCACCGAAA-TGCAAAC
1 AGAGGCACC-AAAGTGCAAAC
25861029 AGAGGCACCAAAGTGCAA
1 AGAGGCACCAAAGTGCAA
25861047 TCCCATACAA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
19 3 0.06
20 43 0.86
21 4 0.08
ACGTcount: A:0.46, C:0.26, G:0.22, T:0.06
Consensus pattern (20 bp):
AGAGGCACCAAAGTGCAAAC
Found at i:25874017 original size:31 final size:31
Alignment explanation
Indices: 25873979--25874046 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
25873969 TAAGGACTTC
25873979 CAAGTTGAGTCTATATAAAGGCTATTGTAAT
1 CAAGTTGAGTCTATATAAAGGCTATTGTAAT
*
25874010 CAAGTTGAGTCTATATAAAGGTTATTGTAAT
1 CAAGTTGAGTCTATATAAAGGCTATTGTAAT
25874041 CAAGTT
1 CAAGTT
25874047 AAACACACAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.37
Consensus pattern (31 bp):
CAAGTTGAGTCTATATAAAGGCTATTGTAAT
Found at i:25877577 original size:19 final size:20
Alignment explanation
Indices: 25877535--25877578 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
25877525 GAGAAAAAGT
25877535 CAAAAGTAAAAATAAGAAGA
1 CAAAAGTAAAAATAAGAAGA
25877555 -AAAAGTACAAAAT-AGAA-A
1 CAAAAGTA-AAAATAAGAAGA
25877573 CAAAAG
1 CAAAAG
25877579 CACTTTGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 1 0.05
19 16 0.73
20 5 0.23
ACGTcount: A:0.70, C:0.07, G:0.14, T:0.09
Consensus pattern (20 bp):
CAAAAGTAAAAATAAGAAGA
Found at i:25877577 original size:20 final size:19
Alignment explanation
Indices: 25877536--25877577 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
25877526 AGAAAAAGTC
*
25877536 AAAAGTAAAAATAAGAAGA
1 AAAAGTAAAAATAAGAACA
25877555 AAAAGTACAAAAT-AGAAACA
1 AAAAGTA-AAAATAAG-AACA
25877575 AAA
1 AAA
25877578 GCACTTTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.74, C:0.05, G:0.12, T:0.10
Consensus pattern (19 bp):
AAAAGTAAAAATAAGAACA
Found at i:25879667 original size:13 final size:13
Alignment explanation
Indices: 25879649--25879673 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25879639 AGTAGATTAG
25879649 TAATTATTTCCCA
1 TAATTATTTCCCA
25879662 TAATTATTTCCC
1 TAATTATTTCCC
25879674 CAAACTACAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.24, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATTATTTCCCA
Found at i:25882322 original size:28 final size:28
Alignment explanation
Indices: 25882286--25882388 Score: 152
Period size: 28 Copynumber: 3.7 Consensus size: 28
25882276 AAATATTTAA
* * *
25882286 TAAATTCGCACACTTAGTGCTTAATAAT
1 TAAACTCGCACACTTAGTGCTTTACAAT
* * *
25882314 CAAAATCGCACACTTAGTGCTTTACCAT
1 TAAACTCGCACACTTAGTGCTTTACAAT
25882342 TAAACTCGCACACTTAGTGCTTTACAAT
1 TAAACTCGCACACTTAGTGCTTTACAAT
25882370 TAAACTCGCACACTTAGTG
1 TAAACTCGCACACTTAGTG
25882389 TCGAAAGTCA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 67 1.00
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (28 bp):
TAAACTCGCACACTTAGTGCTTTACAAT
Found at i:25882998 original size:14 final size:15
Alignment explanation
Indices: 25882979--25883007 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
25882969 TCATGAAACC
25882979 TTCACACAT-ATAAA
1 TTCACACATCATAAA
25882993 TTCACACATCATAAA
1 TTCACACATCATAAA
25883008 CAAACAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATCATAAA
Found at i:25887029 original size:1 final size:1
Alignment explanation
Indices: 25887023--25887065 Score: 77
Period size: 1 Copynumber: 43.0 Consensus size: 1
25887013 TTAATATTAC
*
25887023 AAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
25887066 TGTATTAATT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:0.98, C:0.00, G:0.00, T:0.02
Consensus pattern (1 bp):
A
Found at i:25894497 original size:20 final size:20
Alignment explanation
Indices: 25894459--25894499 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
25894449 GATGGTCAGT
* * *
25894459 TTTTTAAAATAGTGGATAAG
1 TTTTTAAAAAAATGAATAAG
25894479 TTTTTAAAAAAATGAATAAG
1 TTTTTAAAAAAATGAATAAG
25894499 T
1 T
25894500 ATTTCTATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.39
Consensus pattern (20 bp):
TTTTTAAAAAAATGAATAAG
Found at i:25907240 original size:6 final size:6
Alignment explanation
Indices: 25907229--25907253 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
25907219 AAAAAATAAG
25907229 AAAAAT AAAAAT AAAAAT AAAAAT A
1 AAAAAT AAAAAT AAAAAT AAAAAT A
25907254 CTCCTCTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:25909900 original size:18 final size:18
Alignment explanation
Indices: 25909867--25909926 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
25909857 GTTTCCTGCA
25909867 AAAATAAAA-A-TGAAAAT
1 AAAATAAAATAGT-AAAAT
25909884 AAAATAAAATAGTAAAA-
1 AAAATAAAATAGTAAAAT
*
25909901 ATAAATAATAATAGGAAAATT
1 A-AAATAA-AATAGTAAAA-T
25909922 AAAAT
1 AAAAT
25909927 GTTTTTTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
17 10 0.28
18 11 0.31
19 10 0.28
20 4 0.11
21 1 0.03
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.22
Consensus pattern (18 bp):
AAAATAAAATAGTAAAAT
Found at i:25909903 original size:19 final size:19
Alignment explanation
Indices: 25909867--25909926 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
25909857 GTTTCCTGCA
*
25909867 AAAATAAAA-A-TGAAAAT
1 AAAATAAAATAGTAAAAAT
25909884 AAAATAAAATAGTAAAAAT
1 AAAATAAAATAGTAAAAAT
* *
25909903 -AAATAATAATAGGAAAATT
1 AAAATAA-AATAGTAAAAAT
25909922 AAAAT
1 AAAAT
25909927 GTTTTTTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
17 9 0.25
18 7 0.19
19 16 0.44
20 4 0.11
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.22
Consensus pattern (19 bp):
AAAATAAAATAGTAAAAAT
Found at i:25913324 original size:63 final size:63
Alignment explanation
Indices: 25913215--25913528 Score: 188
Period size: 63 Copynumber: 5.0 Consensus size: 63
25913205 TCTACACCTT
* * * * * * **
25913215 CAACTCCAGTTTATTTT-TCACAAGCACCACAACATACGTAACCATTCCCTGCATTAACACATA
1 CAACACCAGTTTATTTTCT-ACAAGCACCTCAACACATGCAATCATTCCCTGCACCAACACATA
* * *
25913278 CAACACCAATTTATTTTCTACAAGCACCTCAACACATGCAATCATTCCTTTCACCAACACATA
1 CAACACCAGTTTATTTTCTACAAGCACCTCAACACATGCAATCATTCCCTGCACCAACACATA
* * * * * * ** * *
25913341 CAAAACCAGTTTATTTTCCATAAGCACCAT-AGCACGTGCAATCATTCACTAAACCGACACATT
1 CAACACCAGTTTATTTTCTACAAGCACC-TCAACACATGCAATCATTCCCTGCACCAACACATA
* * ** ** * * *
25913404 CATCACCAGTTTATTTTAC-ACAAGCACCACAGTACGCGCAATTATTCCCTACACCAACATAGT-
1 CAACACCAGTTTATTTT-CTACAAGCACCTCAACACATGCAATCATTCCCTGCACCAACACA-TA
* * * * * ** * * *
25913467 CATCACCACTTTATTTTAC-ACAAGCATCACAATATGTGCAACCATTCTCTGCACCGACACAT
1 CAACACCAGTTTATTTT-CTACAAGCACCTCAACACATGCAATCATTCCCTGCACCAACACAT
25913529 CTGGTATCAA
Statistics
Matches: 201, Mismatches: 45, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
62 1 0.00
63 196 0.98
64 4 0.02
ACGTcount: A:0.35, C:0.32, G:0.07, T:0.26
Consensus pattern (63 bp):
CAACACCAGTTTATTTTCTACAAGCACCTCAACACATGCAATCATTCCCTGCACCAACACATA
Found at i:25916811 original size:27 final size:27
Alignment explanation
Indices: 25916781--25916930 Score: 131
Period size: 27 Copynumber: 5.5 Consensus size: 27
25916771 ATATTGAGCC
* *
25916781 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
25916808 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
25916835 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
25916863 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
25916890 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
25916917 CGCACACTTAGTGC
1 CGCACACTTAGTGC
25916931 AACAAAGTAG
Statistics
Matches: 100, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
27 78 0.78
28 22 0.22
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:25916893 original size:55 final size:54
Alignment explanation
Indices: 25916781--25916958 Score: 155
Period size: 54 Copynumber: 3.3 Consensus size: 54
25916771 ATATTGAGCC
* * * * *
25916781 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
25916835 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
25916890 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
*
25916944 TGCACACTTAGTGCT
1 CGCACACTTAGTGCT
25916959 GTACAATTTA
Statistics
Matches: 99, Mismatches: 20, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
53 1 0.01
54 54 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:25916931 original size:27 final size:27
Alignment explanation
Indices: 25916802--25916957 Score: 120
Period size: 27 Copynumber: 5.7 Consensus size: 27
25916792 TGCTATATAA
* * * *
25916802 TCAACTCGCACATTTAGTGCCA-CGTAA
1 TCAATTCGCACACTTAGTG-CAGCATAG
*
25916829 TCAAATCGCACACTTAGTGCTA-CATAG
1 TCAATTCGCACACTTAGTGC-AGCATAG
** * *
25916856 TCAAACCCGCACACTTAGTGCCGCATGG
1 TC-AATTCGCACACTTAGTGCAGCATAG
* *
25916884 TCAATTCGCACACTTAGTGCATCATAT
1 TCAATTCGCACACTTAGTGCAGCATAG
* * *
25916911 TCATTTCGCACACTTAGTGCAACAAAG
1 TCAATTCGCACACTTAGTGCAGCATAG
*
25916938 TAGAATT-GCACACTTAGTGC
1 T-CAATTCGCACACTTAGTGC
25916958 TGTACAATTT
Statistics
Matches: 105, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
26 1 0.01
27 79 0.75
28 25 0.24
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCAGCATAG
Found at i:25924400 original size:27 final size:27
Alignment explanation
Indices: 25924370--25924519 Score: 131
Period size: 27 Copynumber: 5.5 Consensus size: 27
25924360 ATATTGAGCC
* *
25924370 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
25924397 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
25924424 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
25924452 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
25924479 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
25924506 CGCACACTTAGTGC
1 CGCACACTTAGTGC
25924520 AACAAAGTAG
Statistics
Matches: 100, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
27 78 0.78
28 22 0.22
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:25924482 original size:55 final size:54
Alignment explanation
Indices: 25924370--25924547 Score: 155
Period size: 54 Copynumber: 3.3 Consensus size: 54
25924360 ATATTGAGCC
* * * * *
25924370 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
25924424 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
25924479 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
*
25924533 TGCACACTTAGTGCT
1 CGCACACTTAGTGCT
25924548 GTACAATTTA
Statistics
Matches: 99, Mismatches: 20, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
53 1 0.01
54 54 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:25924520 original size:27 final size:27
Alignment explanation
Indices: 25924391--25924546 Score: 120
Period size: 27 Copynumber: 5.7 Consensus size: 27
25924381 TGCTATATAA
* * * *
25924391 TCAACTCGCACATTTAGTGCCA-CGTAA
1 TCAATTCGCACACTTAGTG-CAGCATAG
*
25924418 TCAAATCGCACACTTAGTGCTA-CATAG
1 TCAATTCGCACACTTAGTGC-AGCATAG
** * *
25924445 TCAAACCCGCACACTTAGTGCCGCATGG
1 TC-AATTCGCACACTTAGTGCAGCATAG
* *
25924473 TCAATTCGCACACTTAGTGCATCATAT
1 TCAATTCGCACACTTAGTGCAGCATAG
* * *
25924500 TCATTTCGCACACTTAGTGCAACAAAG
1 TCAATTCGCACACTTAGTGCAGCATAG
*
25924527 TAGAATT-GCACACTTAGTGC
1 T-CAATTCGCACACTTAGTGC
25924547 TGTACAATTT
Statistics
Matches: 105, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
26 1 0.01
27 79 0.75
28 25 0.24
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCAGCATAG
Found at i:25929511 original size:14 final size:13
Alignment explanation
Indices: 25929490--25929528 Score: 60
Period size: 15 Copynumber: 2.8 Consensus size: 13
25929480 AAAAAAAAGT
25929490 AAATCATTTTCTA
1 AAATCATTTTCTA
25929503 AAGATCATTTTTCTA
1 AA-ATCA-TTTTCTA
25929518 AAATCATTTTC
1 AAATCATTTTC
25929529 AGTGAAACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 7 0.29
14 8 0.33
15 9 0.38
ACGTcount: A:0.36, C:0.15, G:0.03, T:0.46
Consensus pattern (13 bp):
AAATCATTTTCTA
Found at i:25929516 original size:15 final size:14
Alignment explanation
Indices: 25929490--25929527 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
25929480 AAAAAAAAGT
25929490 AAATCA-TTTTCTA
1 AAATCATTTTTCTA
25929503 AAGATCATTTTTCTA
1 AA-ATCATTTTTCTA
25929518 AAATCATTTT
1 AAATCATTTT
25929528 CAGTGAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.09
14 12 0.52
15 9 0.39
ACGTcount: A:0.37, C:0.13, G:0.03, T:0.47
Consensus pattern (14 bp):
AAATCATTTTTCTA
Found at i:25932031 original size:42 final size:41
Alignment explanation
Indices: 25931983--25932062 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 41
25931973 GCACGTAGCC
* * *
25931983 TGCTAGGCTCAATGCCTGAAACAAATACACTGGCACGAAACT
1 TGCTAGGCTCAAGGCCTGAAAC-AATACACCGACACGAAACT
* *
25932025 TGCTAGGCTCAGGGCCTGATACAATACACCGACACGAA
1 TGCTAGGCTCAAGGCCTGAAACAATACACCGACACGAA
25932063 GCCTACTAGG
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
41 14 0.42
42 19 0.58
ACGTcount: A:0.34, C:0.28, G:0.21, T:0.17
Consensus pattern (41 bp):
TGCTAGGCTCAAGGCCTGAAACAATACACCGACACGAAACT
Found at i:25932072 original size:41 final size:41
Alignment explanation
Indices: 25931960--25932086 Score: 128
Period size: 41 Copynumber: 3.1 Consensus size: 41
25931950 ATTTTACCTT
* * * *
25931960 ATACAATTCATCGGCACGTAGCCTGCTAGGCTCAATGCCTG
1 ATACAATACACCGGCACGAAGCCTGCTAGGCTCAAGGCCTG
* * * * *
25932001 AAACAAATACACTGGCACGAAACTTGCTAGGCTCAGGGCCTG
1 ATAC-AATACACCGGCACGAAGCCTGCTAGGCTCAAGGCCTG
* * * *
25932043 ATACAATACACCGACACGAAGCCTACTAGGCTTAAAGCCTG
1 ATACAATACACCGGCACGAAGCCTGCTAGGCTCAAGGCCTG
25932084 ATA
1 ATA
25932087 TAATTCATCG
Statistics
Matches: 67, Mismatches: 18, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
41 35 0.52
42 32 0.48
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (41 bp):
ATACAATACACCGGCACGAAGCCTGCTAGGCTCAAGGCCTG
Found at i:25942152 original size:25 final size:25
Alignment explanation
Indices: 25942123--25942189 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
25942113 GATACTCCAC
*
25942123 AGCTCGTGAGAGCATACTAATTTAT
1 AGCTCATGAGAGCATACTAATTTAT
* *
25942148 AGCTCATAAGAGCATATTAATTTAT
1 AGCTCATGAGAGCATACTAATTTAT
25942173 AGCTCATGAGAGCATAC
1 AGCTCATGAGAGCATAC
25942190 CGATCTACAG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (25 bp):
AGCTCATGAGAGCATACTAATTTAT
Found at i:25949778 original size:14 final size:14
Alignment explanation
Indices: 25949759--25949785 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
25949749 TGATTCGACA
25949759 TAACCTTTTATGAT
1 TAACCTTTTATGAT
25949773 TAACCTTTTATGA
1 TAACCTTTTATGA
25949786 AATAATCCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.48
Consensus pattern (14 bp):
TAACCTTTTATGAT
Found at i:25962401 original size:20 final size:20
Alignment explanation
Indices: 25962370--25962432 Score: 83
Period size: 20 Copynumber: 3.1 Consensus size: 20
25962360 GCATCATAGA
25962370 TGCATAACAGGGGCACCAAAG
1 TGCA-AACAGGGGCACCAAAG
*
25962391 TGCAGACAGGGGCA-CAAATG
1 TGCAAACAGGGGCACCAAA-G
*
25962411 TGCAAACAGGGGCACCATAG
1 TGCAAACAGGGGCACCAAAG
25962431 TG
1 TG
25962433 TGAATAGGAC
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
19 4 0.11
20 26 0.70
21 7 0.19
ACGTcount: A:0.35, C:0.22, G:0.32, T:0.11
Consensus pattern (20 bp):
TGCAAACAGGGGCACCAAAG
Found at i:25971124 original size:16 final size:16
Alignment explanation
Indices: 25971091--25971129 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
25971081 CGTATAAAAG
*
25971091 TAGTTTAGTTATTTTT
1 TAGTTTAGTTAATTTT
25971107 TA-TTTAGTTTAATTTT
1 TAGTTTAG-TTAATTTT
25971123 TAGTTTA
1 TAGTTTA
25971130 TAGATAACAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 5 0.25
16 11 0.55
17 4 0.20
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.67
Consensus pattern (16 bp):
TAGTTTAGTTAATTTT
Found at i:25971612 original size:21 final size:21
Alignment explanation
Indices: 25971588--25971627 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
25971578 AGTTTACGAC
25971588 TTTC-AATTAGTCTTATTTTAG
1 TTTCTAATTAGT-TTATTTTAG
*
25971609 TTTCTATTTAGTTTATTTT
1 TTTCTAATTAGTTTATTTT
25971628 GTACTTAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.65
Consensus pattern (21 bp):
TTTCTAATTAGTTTATTTTAG
Found at i:25972902 original size:15 final size:15
Alignment explanation
Indices: 25972882--25972911 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
25972872 CATGGCAGAC
*
25972882 TATCTGCTATTTGTA
1 TATCTGATATTTGTA
25972897 TATCTGATATTTGTA
1 TATCTGATATTTGTA
25972912 CATAAGCATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.10, G:0.13, T:0.53
Consensus pattern (15 bp):
TATCTGATATTTGTA
Found at i:26001983 original size:20 final size:20
Alignment explanation
Indices: 26001952--26002014 Score: 83
Period size: 20 Copynumber: 3.1 Consensus size: 20
26001942 GCATCATAGA
26001952 TGCATAACAGGGGCACCAAAG
1 TGCA-AACAGGGGCACCAAAG
*
26001973 TGCAGACAGGGGCA-CAAATG
1 TGCAAACAGGGGCACCAAA-G
*
26001993 TGCAAACAGGGGCACCATAG
1 TGCAAACAGGGGCACCAAAG
26002013 TG
1 TG
26002015 TGAATAGGAC
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
19 4 0.11
20 26 0.70
21 7 0.19
ACGTcount: A:0.35, C:0.22, G:0.32, T:0.11
Consensus pattern (20 bp):
TGCAAACAGGGGCACCAAAG
Found at i:26007121 original size:16 final size:16
Alignment explanation
Indices: 26007095--26007128 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
26007085 GATTAAGGGC
26007095 TTTAAGTTT-AATTAA
1 TTTAAGTTTAAATTAA
26007110 TTTAATGTTTAAATTAA
1 TTTAA-GTTTAAATTAA
26007127 TT
1 TT
26007129 AAACTATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 4 0.24
17 8 0.47
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (16 bp):
TTTAAGTTTAAATTAA
Found at i:26018130 original size:14 final size:15
Alignment explanation
Indices: 26018106--26018134 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26018096 GCCCCATGAC
26018106 TCTTCCTTTTCTCCT
1 TCTTCCTTTTCTCCT
26018121 TCTT-CTTTTCTCCT
1 TCTTCCTTTTCTCCT
26018135 ATCGAAGCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (15 bp):
TCTTCCTTTTCTCCT
Found at i:26018365 original size:4 final size:5
Alignment explanation
Indices: 26018311--26018367 Score: 52
Period size: 4 Copynumber: 11.8 Consensus size: 5
26018301 TTTTCCTTAT
26018311 TTTTA -TTTA -TTTA -TTTA -TTTA TTTTTA TTCTTA GTTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA TT-TTA -TTTTA TTTTA
26018355 TTTTA -TTTA TTTT
1 TTTTA TTTTA TTTT
26018368 GAGAATTATT
Statistics
Matches: 47, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
4 20 0.43
5 15 0.32
6 10 0.21
7 2 0.04
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:26027819 original size:28 final size:27
Alignment explanation
Indices: 26027755--26027906 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
26027745 TTATTAAGTC
* * *
26027755 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
26027782 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCA-ACT
26027810 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
26027837 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
26027865 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
26027892 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26027907 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:26027839 original size:55 final size:55
Alignment explanation
Indices: 26027755--26027906 Score: 250
Period size: 55 Copynumber: 2.8 Consensus size: 55
26027745 TTATTAAGTC
* * * *
26027755 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
26027810 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
26027865 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
26027907 GCACAATTTA
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 91 1.00
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:26030443 original size:29 final size:29
Alignment explanation
Indices: 26030378--26030456 Score: 94
Period size: 29 Copynumber: 2.8 Consensus size: 29
26030368 CCATTCTAAC
*
26030378 AACCTTTGTGGCTTACTCTG-A-ATGAAT
1 AACCTTTGTGGCATACTCTGTATATGAAT
*
26030405 CACCTTTGTGGCATACTCTGTATAT-ATAT
1 AACCTTTGTGGCATACTCTGTATATGA-AT
26030434 AACCTTTGTGGCATA-TACTGTAT
1 AACCTTTGTGGCATACT-CTGTAT
26030457 GGTTTGCCTT
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
27 18 0.40
28 3 0.07
29 24 0.53
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.39
Consensus pattern (29 bp):
AACCTTTGTGGCATACTCTGTATATGAAT
Found at i:26034901 original size:13 final size:14
Alignment explanation
Indices: 26034882--26034919 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
26034872 CAATGGCATA
26034882 GAAATAATATAAAC
1 GAAATAATATAAAC
26034896 -AAATAA-ATAAAC
1 GAAATAATATAAAC
26034908 GAAATTAATATA
1 GAAA-TAATATA
26034920 CAAAAAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 6 0.29
13 9 0.43
14 3 0.14
15 3 0.14
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.24
Consensus pattern (14 bp):
GAAATAATATAAAC
Found at i:26035364 original size:28 final size:28
Alignment explanation
Indices: 26035285--26035374 Score: 87
Period size: 28 Copynumber: 3.1 Consensus size: 28
26035275 ATACATGTAC
* *
26035285 ATATAT-AAAAAATAATAATTATCTACAA
1 ATATATAAAAAAATAATAATAAT-TACAT
*
26035313 ATATATAGATTATAAAA-AA-GATAATTACAT
1 ATATATA-A--A-AAAATAATAATAATTACAT
26035343 ATATATAAAAAAATAATAATAATTACAT
1 ATATATAAAAAAATAATAATAATTACAT
26035371 ATAT
1 ATAT
26035375 TGAAATTAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
26 4 0.08
27 3 0.06
28 20 0.39
29 1 0.02
30 12 0.24
31 4 0.08
32 3 0.06
33 4 0.08
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.33
Consensus pattern (28 bp):
ATATATAAAAAAATAATAATAATTACAT
Found at i:26035714 original size:3 final size:3
Alignment explanation
Indices: 26035706--26035753 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
26035696 GTATATATAG
*
26035706 TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
26035754 CTTAATAACA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:26037926 original size:131 final size:131
Alignment explanation
Indices: 26037689--26037931 Score: 364
Period size: 131 Copynumber: 1.9 Consensus size: 131
26037679 TACAGGAAGG
** *
26037689 TAAGATCTGCTATTTTCAACCTACTCCACTGCTACTCAGGGAGGTAGGATTCACAATCTTCAACC
1 TAAGATCTGCTATTTTCAACCTACTCCACTGCTACTCAGGGAGACAAGATTCACAATCTTCAACC
* *
26037754 TATTCCACTACTGACCAGGGCGATAAGGCTGGGGACTTCGATCTGCTCCACTACTGCTTAGGGAG
66 TATTCCACTACTGACCAGGGAGATAAGGCTGGGGACATCGATCTGCTCCACTACTGCTTAGGGAG
26037819 A
131 A
*
26037820 TAAGATCTG-TAATTTTCAACCTACTCCACTGCTGAC-CGGGGAGACAAGATTCACAATCTTCAA
1 TAAGATCTGCT-ATTTTCAACCTACTCCACTGCT-ACTCAGGGAGACAAGATTCACAATCTTCAA
* * * *
26037883 CCTATTCCACTGCTGACCAGGGAGATAGGGCTGGGGTCATCGATTTGCT
64 CCTATTCCACTACTGACCAGGGAGATAAGGCTGGGGACATCGATCTGCT
26037932 TCGCTATCCG
Statistics
Matches: 100, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
130 1 0.01
131 97 0.97
132 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (131 bp):
TAAGATCTGCTATTTTCAACCTACTCCACTGCTACTCAGGGAGACAAGATTCACAATCTTCAACC
TATTCCACTACTGACCAGGGAGATAAGGCTGGGGACATCGATCTGCTCCACTACTGCTTAGGGAG
A
Found at i:26038023 original size:88 final size:88
Alignment explanation
Indices: 26037922--26038585 Score: 900
Period size: 88 Copynumber: 7.5 Consensus size: 88
26037912 GCTGGGGTCA
* * * * * *
26037922 TCGATTTGCTTCGCTATCCGTGCAGGAAGGCAAGATATGTTATTTTTAACCTGCTCCGTTGCAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAAC
26037987 CCAGGGAGGCAAGGCTGGTGTTT
66 CCAGGGAGGCAAGGCTGGTGTTT
* * *
26038010 TCGATCTGTTTCGCTGTCGGTGTAGGAAGGCAAGATTTGCTATTTTTAACCTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAAC
*
26038075 CCAGGGAGGCAAGGCTGGTGTCT
66 CCAGGGAGGCAAGGCTGGTGTTT
* * *
26038098 TCGATCTGCTTCGCTGTCGGTGCAAGAATGCAAGATTTGCTATTTTTAACCTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAAC
* * *
26038163 CTAGGGAGGCAAGGCTGGTATCT
66 CCAGGGAGGCAAGGCTGGTGTTT
* * *
26038186 TCGATTTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACTTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAAC
* * *
26038251 CCAGAGAGGCAAGGCTAGTATTT
66 CCAGGGAGGCAAGGCTGGTGTTT
* * *
26038274 TCGATCTGCTTTGCTGTCGGTGCAGGAAGGTAAGATCTGCTATTTTTAACTTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAAC
*
26038339 CCAGGGAGGCAAGGCTAGTGTCTT
66 CCAGGGAGGCAAGGCTGGTGT-TT
* * * * * *
26038363 T-GATATGTTTCGCTGTCAGTGCAGGAAGACAAGATCTGTTATTTTTAACCTGCTTCGCTGCAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAAC
* *
26038427 CCAAGGAGGCAAGGCTAGTGTCTT
66 CCAGGGAGGCAAGGCTGGTGT-TT
** * * *
26038451 T-GATCTGCTTCATTGTCGGTGCAGGAAGGTAAGATCTGCTATTTTTAACCTACTCCGCTACAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAAC
* * *
26038515 CTAGGGAGACAAGGCTGGTGTCT
66 CCAGGGAGGCAAGGCTGGTGTTT
* *
26038538 TCGATATGCTTTGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTA
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTA
26038586 CTAATTTGCT
Statistics
Matches: 512, Mismatches: 62, Indels: 4
0.89 0.11 0.01
Matches are distributed among these distances:
87 2 0.00
88 507 0.99
89 3 0.01
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (88 bp):
TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAAC
CCAGGGAGGCAAGGCTGGTGTTT
Found at i:26045176 original size:151 final size:153
Alignment explanation
Indices: 26045023--26045394 Score: 355
Period size: 157 Copynumber: 2.4 Consensus size: 153
26045013 TAGAAAAATA
* * * * *
26045023 TATATAAAAAAAATTATGAAGA-ATA-ATATAAGAAAACATATGTATATAC-ATATTTATCAAAG
1 TATATAAAAAAAA-AATGAAGATATAGATAT-AGAAAACATATGCAAATACAATA-TAAT-AAAA
26045085 TA-AAAAAAAAT-TGAAACCTGAATAAAAAAGTGTG-TATATATGTATATAAAAGTTAGGAAATA
62 TATAAAAAAAATATGAAACCTGAATAAAAAAGTGTGATATATATGTATATAAAAGTTAGGAAATA
26045147 AAAT-A-AAAATAAAAATATGTATATG
127 AAATAATAAAATAAAAATATGTATATG
*** * * * ** *
26045172 TATATAAAACGTAAATGAATATATAGGTATATAAAAGTTATGCAAATAGAATGATAATAAAATAT
1 TATATAAAAAAAAAATGAAGATATAGATATAGAAAACATATGCAAATACAAT-ATAATAAAATAT
* * * **
26045237 ATATATAATATGTGACCTGAATAAAAAAGTGTGTATATATATGTATATAAAAGTTAGGAAATAAA
65 AAAAAAAATATGAAACCTGAATAAAAAAGTGTG-ATATATATGTATATAAAAGTTAGGAAATAAA
26045302 ATAAAATAAAATAAAAATATGTATATG
129 AT--AATAAAATAAAAATATGTATATG
* * * * * ** * *
26045329 TATATAAAACATAAATGAATATATAGGTATATAAAAGTTATGCAAATAGAATGATAATAATATAT
1 TATATAAAAAAAAAATGAAGATATAGATATAGAAAACATATGCAAATACAAT-ATAATAAAATAT
26045394 A
65 A
26045395 TATATAATAT
Statistics
Matches: 190, Mismatches: 21, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
148 6 0.03
149 31 0.16
150 14 0.07
151 22 0.12
153 32 0.17
156 1 0.01
157 84 0.44
ACGTcount: A:0.55, C:0.03, G:0.12, T:0.30
Consensus pattern (153 bp):
TATATAAAAAAAAAATGAAGATATAGATATAGAAAACATATGCAAATACAATATAATAAAATATA
AAAAAAATATGAAACCTGAATAAAAAAGTGTGATATATATGTATATAAAAGTTAGGAAATAAAAT
AATAAAATAAAAATATGTATATG
Found at i:26045298 original size:153 final size:153
Alignment explanation
Indices: 26045100--26045407 Score: 548
Period size: 157 Copynumber: 2.0 Consensus size: 153
26045090 AAAAATTGAA
26045100 ACCTGAATAAAAAAGTGTGTATATATGTATATAAAAGTTAGGAAATAAAAT-A-AAAATAAAAAT
1 ACCTGAATAAAAAAGTGTGTATATATGTATATAAAAGTTAGGAAATAAAATAATAAAATAAAAAT
*
26045163 ATGTATATGTATATAAAACGTAAATGAATATATAGGTATATAAAAGTTATGCAAATAGAATGATA
66 ATGTATATGTATATAAAACATAAATGAATATATAGGTATATAAAAGTTATGCAAATAGAATGATA
26045228 ATAAAATATATATATAATATGTG
131 ATAAAATATATATATAATATGTG
26045251 ACCTGAATAAAAAAGTGTGTATATATATGTATATAAAAGTTAGGAAATAAAATAAAATAAAATAA
1 ACCTGAATAAAAAAGTGTG--TATATATGTATATAAAAGTTAGGAAATAAAAT--AATAAAATAA
26045316 AAATATGTATATGTATATAAAACATAAATGAATATATAGGTATATAAAAGTTATGCAAATAGAAT
62 AAATATGTATATGTATATAAAACATAAATGAATATATAGGTATATAAAAGTTATGCAAATAGAAT
*
26045381 GATAATAATATATATATATAATATGTG
127 GATAATAAAATATATATATAATATGTG
26045408 CATGTGTTTA
Statistics
Matches: 149, Mismatches: 2, Indels: 6
0.95 0.01 0.04
Matches are distributed among these distances:
151 19 0.13
153 32 0.21
156 1 0.01
157 97 0.65
ACGTcount: A:0.53, C:0.03, G:0.13, T:0.31
Consensus pattern (153 bp):
ACCTGAATAAAAAAGTGTGTATATATGTATATAAAAGTTAGGAAATAAAATAATAAAATAAAAAT
ATGTATATGTATATAAAACATAAATGAATATATAGGTATATAAAAGTTATGCAAATAGAATGATA
ATAAAATATATATATAATATGTG
Found at i:26045344 original size:25 final size:26
Alignment explanation
Indices: 26045307--26045364 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
26045297 ATAAAATAAA
* * *
26045307 ATAAAATAAAAAT-ATGTATATGTAT
1 ATAAAACAAAAATAATATATAGGTAT
*
26045332 ATAAAACATAAATGAATATATAGGTAT
1 ATAAAACAAAAAT-AATATATAGGTAT
26045359 ATAAAA
1 ATAAAA
26045365 GTTATGCAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 11 0.41
27 16 0.59
ACGTcount: A:0.59, C:0.02, G:0.09, T:0.31
Consensus pattern (26 bp):
ATAAAACAAAAATAATATATAGGTAT
Found at i:26045497 original size:3 final size:3
Alignment explanation
Indices: 26045489--26045524 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
26045479 GTATATATAG
26045489 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
26045525 ATGGGGACTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:26047973 original size:29 final size:32
Alignment explanation
Indices: 26047931--26047994 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 32
26047921 TAATAACGCC
26047931 AAAATTACATTTTAGCCTTCTAAAAA-TAAAA
1 AAAATTACATTTTAGCCTTCTAAAAACTAAAA
* * *
26047962 AAAATTA-A-TTTAGTCTTTTAAAAACTATAA
1 AAAATTACATTTTAGCCTTCTAAAAACTAAAA
26047992 AAA
1 AAA
26047995 TACAAATTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 14 0.48
30 8 0.28
31 7 0.24
ACGTcount: A:0.53, C:0.09, G:0.03, T:0.34
Consensus pattern (32 bp):
AAAATTACATTTTAGCCTTCTAAAAACTAAAA
Found at i:26050921 original size:27 final size:27
Alignment explanation
Indices: 26050883--26051014 Score: 147
Period size: 27 Copynumber: 4.9 Consensus size: 27
26050873 CATAAACACG
*
26050883 TCATGAAAGAAAACCCTTTGTGGCGAA
1 TCATGAAAGAAAAACCTTTGTGGCGAA
*
26050910 TCATGAAAGAAAAACCTTTGTGGCAAA
1 TCATGAAAGAAAAACCTTTGTGGCGAA
* * * * *
26050937 TCGTTAAAGAACAACCTTTATGGTGAA
1 TCATGAAAGAAAAACCTTTGTGGCGAA
*
26050964 TCATGAAAGAAAAACCTCTGTGGCGAA
1 TCATGAAAGAAAAACCTTTGTGGCGAA
* * * * *
26050991 CCCTGCAAGGATAACCTTTGTGGC
1 TCATGAAAGAAAAACCTTTGTGGC
26051015 ATACTACGGA
Statistics
Matches: 85, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 85 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.23
Consensus pattern (27 bp):
TCATGAAAGAAAAACCTTTGTGGCGAA
Found at i:26055195 original size:34 final size:34
Alignment explanation
Indices: 26055147--26055211 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
26055137 CACCTTAAGC
*
26055147 TGAGATTTTATAATTGTTGTACACTGCATAAAGA
1 TGAGATTTTATAATTGTTGGACACTGCATAAAGA
*
26055181 TGAGATTTTGTAATTGTTGGACACTGCATAA
1 TGAGATTTTATAATTGTTGGACACTGCATAA
26055212 GGAGAGTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.38
Consensus pattern (34 bp):
TGAGATTTTATAATTGTTGGACACTGCATAAAGA
Found at i:26061230 original size:25 final size:24
Alignment explanation
Indices: 26061170--26061231 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 24
26061160 TTTATTTGGG
*
26061170 AAGCCTTTGTGGCAAGTTATCTGTA
1 AAGCC-TTGTGGCAAGTTACCTGTA
* *
26061195 AAGTCGTTGTGGCAGGTTACCTGTA
1 AAG-CCTTGTGGCAAGTTACCTGTA
26061220 AAGCCTATGTGG
1 AAGCCT-TGTGG
26061232 TGTAATGCCT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
24 2 0.06
25 28 0.90
26 1 0.03
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.32
Consensus pattern (24 bp):
AAGCCTTGTGGCAAGTTACCTGTA
Found at i:26072573 original size:22 final size:22
Alignment explanation
Indices: 26072548--26072595 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
26072538 CCCATTTGTG
*
26072548 GTACTAAACATTTTTCCATGCA
1 GTACTAAACATTTTTCCATACA
*
26072570 GTACTAAATATTTTTCCATACA
1 GTACTAAACATTTTTCCATACA
26072592 GTAC
1 GTAC
26072596 AATTAAGGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (22 bp):
GTACTAAACATTTTTCCATACA
Found at i:26074050 original size:23 final size:23
Alignment explanation
Indices: 26074024--26074073 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
26074014 TTATGTTATC
*
26074024 ATTAGTATTAGATTTAGTTTTTT
1 ATTAGTATCAGATTTAGTTTTTT
* ** *
26074047 ATTATTATCATTTTTTGTTTTTT
1 ATTAGTATCAGATTTAGTTTTTT
26074070 ATTA
1 ATTA
26074074 TTCTATGATA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.24, C:0.02, G:0.08, T:0.66
Consensus pattern (23 bp):
ATTAGTATCAGATTTAGTTTTTT
Found at i:26075667 original size:27 final size:29
Alignment explanation
Indices: 26075610--26075671 Score: 76
Period size: 27 Copynumber: 2.2 Consensus size: 29
26075600 GTGAGACTTC
*
26075610 TTTATTTTATTTTGATTTTGAACTATGTT
1 TTTATTTTATTTTGATTTTGAACTATATT
*
26075639 TTTATTTT-TTTT-ATTTTGACAGT-TATT
1 TTTATTTTATTTTGATTTTGA-ACTATATT
26075666 TTTATT
1 TTTATT
26075672 CCAATTTGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 16 0.53
28 6 0.20
29 8 0.27
ACGTcount: A:0.19, C:0.03, G:0.08, T:0.69
Consensus pattern (29 bp):
TTTATTTTATTTTGATTTTGAACTATATT
Found at i:26087050 original size:27 final size:28
Alignment explanation
Indices: 26086973--26087041 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
26086963 TGTAATCCCT
26086973 GTGTTTACTATCCCAACGGACTA-CCTC
1 GTGTTTACTATCCCAACGGACTATCCTC
* *
26087000 GTGTTTACTATCCCAATGGACTATCTTC
1 GTGTTTACTATCCCAACGGACTATCCTC
26087028 -TGTTTACTATCCCA
1 GTGTTTACTATCCCA
26087042 GGAGACTATA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
27 36 0.92
28 3 0.08
ACGTcount: A:0.22, C:0.29, G:0.13, T:0.36
Consensus pattern (28 bp):
GTGTTTACTATCCCAACGGACTATCCTC
Found at i:26088607 original size:27 final size:27
Alignment explanation
Indices: 26088577--26088799 Score: 175
Period size: 27 Copynumber: 8.3 Consensus size: 27
26088567 TATAATAGTC
*
26088577 ATTTTACCCTACGAGCGTATTTCGGTA
1 ATTTTACCCTACGAGGGTATTTCGGTA
** *
26088604 ATTTTACCCT-TTAGGGTTATCTCGGTA
1 ATTTTACCCTACGAGGG-TATTTCGGTA
* * *
26088631 ATTTTACCTTTCGAGGGTATTCCGGTA
1 ATTTTACCCTACGAGGGTATTTCGGTA
* * * * *
26088658 ATTTTACCTTTCGGGGGAATTTTGGTA
1 ATTTTACCCTACGAGGGTATTTCGGTA
* **
26088685 ATTTTACCC-ATCAAGGGTATTTTAGTA
1 ATTTTACCCTA-CGAGGGTATTTCGGTA
26088712 ATTTTACCC-ATCGAGGGTATTTCGGTA
1 ATTTTACCCTA-CGAGGGTATTTCGGTA
* * * *
26088739 ATTTTACCC-ATCGAGGATGTTTTGATA
1 ATTTTACCCTA-CGAGGGTATTTCGGTA
** * *
26088766 ATTTTACCCTTTGGGGGTATTTCGATA
1 ATTTTACCCTACGAGGGTATTTCGGTA
26088793 ATTTTAC
1 ATTTTAC
26088800 AACCTTTTCG
Statistics
Matches: 160, Mismatches: 32, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
26 3 0.02
27 153 0.96
28 4 0.03
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.42
Consensus pattern (27 bp):
ATTTTACCCTACGAGGGTATTTCGGTA
Found at i:26088651 original size:54 final size:54
Alignment explanation
Indices: 26088577--26088799 Score: 218
Period size: 54 Copynumber: 4.1 Consensus size: 54
26088567 TATAATAGTC
* * *
26088577 ATTTTACCC-TACGAGCGTATTTCGGTAATTTTACCCTTTAGGGTTATCTCGGTA
1 ATTTTACCCAT-CGAGGGTATTTCGGTAATTTTACCCTTTAGGGGTATTTCGGTA
** * * * *
26088631 ATTTTACCTTTCGAGGGTATTCCGGTAATTTTA-CCTTTCGGGGGAATTTTGGTA
1 ATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCTTT-AGGGGTATTTCGGTA
* ** * *
26088685 ATTTTACCCATCAAGGGTATTTTAGTAATTTTACCC-ATCGAGGGTATTTCGGTA
1 ATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCTTTAG-GGGTATTTCGGTA
* * * * * *
26088739 ATTTTACCCATCGAGGATGTTTTGATAATTTTACCCTTTGGGGGTATTTCGATA
1 ATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCTTTAGGGGTATTTCGGTA
26088793 ATTTTAC
1 ATTTTAC
26088800 AACCTTTTCG
Statistics
Matches: 138, Mismatches: 26, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
53 6 0.04
54 127 0.92
55 5 0.04
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.42
Consensus pattern (54 bp):
ATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCTTTAGGGGTATTTCGGTA
Found at i:26088784 original size:81 final size:81
Alignment explanation
Indices: 26088602--26088799 Score: 220
Period size: 81 Copynumber: 2.4 Consensus size: 81
26088592 CGTATTTCGG
* * * ** *
26088602 TAATTTTACCCTTTAGGGTTATCTCGGTAATTTTACCTTTCGAGGGTATTCCGGTAATTTTACCT
1 TAATTTTACCCTTTAGGGGTATTTCAGTAATTTTACCCATCGAGGGTATTCCGGTAATTTTACCC
* * *
26088667 TTCGGGGGAATTTTGG
66 ATCGGAGGAATTTTGA
* * * * *
26088683 TAATTTTACCCATCAAGGGTATTTTAGTAATTTTACCCATCGAGGGTATTTCGGTAATTTTACCC
1 TAATTTTACCCTTTAGGGGTATTTCAGTAATTTTACCCATCGAGGGTATTCCGGTAATTTTACCC
*
26088748 ATC-GAGGATGTTTTGA
66 ATCGGAGGA-ATTTTGA
*
26088764 TAATTTTACCCTTTGGGGGTATTTC-GATAATTTTAC
1 TAATTTTACCCTTTAGGGGTATTTCAG-TAATTTTAC
26088800 AACCTTTTCG
Statistics
Matches: 95, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
80 5 0.05
81 90 0.95
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.42
Consensus pattern (81 bp):
TAATTTTACCCTTTAGGGGTATTTCAGTAATTTTACCCATCGAGGGTATTCCGGTAATTTTACCC
ATCGGAGGAATTTTGA
Found at i:26093073 original size:27 final size:27
Alignment explanation
Indices: 26093026--26093123 Score: 151
Period size: 27 Copynumber: 3.6 Consensus size: 27
26093016 TGTACATGTA
* * *
26093026 TGCTCACACGGGCTCTAAAAATGGGCC
1 TGCTCACACGAGCTGTGAAAATGGGCC
26093053 TGCTCACACGAGCTGTGAAAATGGGCC
1 TGCTCACACGAGCTGTGAAAATGGGCC
*
26093080 TGCTCACACAAGCTGTGAAAATGGGCC
1 TGCTCACACGAGCTGTGAAAATGGGCC
*
26093107 TGCTCAAACGAGCTGTG
1 TGCTCACACGAGCTGTG
26093124 GGTCGAAACG
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 65 1.00
ACGTcount: A:0.27, C:0.27, G:0.28, T:0.19
Consensus pattern (27 bp):
TGCTCACACGAGCTGTGAAAATGGGCC
Found at i:26098021 original size:38 final size:38
Alignment explanation
Indices: 26097974--26098049 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
26097964 TTCTAAAGAT
26097974 ATAAACCTTCATGTATGTCTAATCTCAAGAGAAACTAA
1 ATAAACCTTCATGTATGTCTAATCTCAAGAGAAACTAA
26098012 ATAAACCTTCATGTATGTCTAATCTCAAGAGAAACTAA
1 ATAAACCTTCATGTATGTCTAATCTCAAGAGAAACTAA
26098050 GTTTTCATGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.42, C:0.18, G:0.11, T:0.29
Consensus pattern (38 bp):
ATAAACCTTCATGTATGTCTAATCTCAAGAGAAACTAA
Found at i:26114777 original size:4 final size:4
Alignment explanation
Indices: 26114768--26114803 Score: 63
Period size: 4 Copynumber: 9.0 Consensus size: 4
26114758 ATTTTAGTCG
*
26114768 TTTA TTTA TTTA TTTA TTTA TTTA TTTA GTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
26114804 ATTTCTCTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:26117013 original size:4 final size:4
Alignment explanation
Indices: 26117004--26117106 Score: 206
Period size: 4 Copynumber: 25.8 Consensus size: 4
26116994 CAAGTTGATA
26117004 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26117052 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26117100 TATG TAT
1 TATG TAT
26117107 ATGAGAAGTT
Statistics
Matches: 99, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 99 1.00
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:26121885 original size:23 final size:24
Alignment explanation
Indices: 26121855--26121925 Score: 101
Period size: 23 Copynumber: 3.0 Consensus size: 24
26121845 TTGGTGGGAG
26121855 CATTCTGGCACTTCAGTGCAAT-T
1 CATTCTGGCACTTCAGTGCAATAT
26121878 CATTCTGGCACTTCAGTGC-ATAT
1 CATTCTGGCACTTCAGTGCAATAT
* *
26121901 CATTTTGGCACTACAGTGCATATAT
1 CATTCTGGCACTTCAGTGCA-ATAT
26121926 AGAGTGTTTG
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
22 2 0.05
23 37 0.86
25 4 0.09
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (24 bp):
CATTCTGGCACTTCAGTGCAATAT
Found at i:26124941 original size:12 final size:11
Alignment explanation
Indices: 26124919--26124956 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
26124909 TAGCTTAAGG
26124919 TTTCTTTAGTT
1 TTTCTTTAGTT
26124930 TTTCTCTTAGTT
1 TTTCT-TTAGTT
26124942 TTTCTTT--TT
1 TTTCTTTAGTT
26124951 TTTCTT
1 TTTCTT
26124957 CTCGGGTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 8 0.31
11 7 0.27
12 11 0.42
ACGTcount: A:0.05, C:0.13, G:0.05, T:0.76
Consensus pattern (11 bp):
TTTCTTTAGTT
Found at i:26131896 original size:49 final size:49
Alignment explanation
Indices: 26131826--26131932 Score: 169
Period size: 49 Copynumber: 2.2 Consensus size: 49
26131816 ACGAGCTGTG
* *
26131826 AATCGGTAAGCTTATACGAGCTGAGAATCGATAAGCTCTCACGAGATGC
1 AATCGGTAAGCTCATAAGAGCTGAGAATCGATAAGCTCTCACGAGATGC
* *
26131875 AATCGGTAAGCTCATAAGAGCTGAGAATCGGTAAGCTCTCACGAGCTGC
1 AATCGGTAAGCTCATAAGAGCTGAGAATCGATAAGCTCTCACGAGATGC
*
26131924 AATTGGTAA
1 AATCGGTAA
26131933 TCCCTAATGG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 53 1.00
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (49 bp):
AATCGGTAAGCTCATAAGAGCTGAGAATCGATAAGCTCTCACGAGATGC
Found at i:26131912 original size:25 final size:25
Alignment explanation
Indices: 26131810--26131922 Score: 133
Period size: 25 Copynumber: 4.6 Consensus size: 25
26131800 GTATATGTAT
*
26131810 GCTCATACGAGCTGTGAATCGGTAA
1 GCTCATACGAGCTGAGAATCGGTAA
* *
26131835 GCTTATACGAGCTGAGAATCGATAA
1 GCTCATACGAGCTGAGAATCGGTAA
* *
26131860 GCTC-TCACGAGATG-CAATCGGTAA
1 GCTCAT-ACGAGCTGAGAATCGGTAA
*
26131884 GCTCATAAGAGCTGAGAATCGGTAA
1 GCTCATACGAGCTGAGAATCGGTAA
26131909 GCTC-TCACGAGCTG
1 GCTCAT-ACGAGCTG
26131923 CAATTGGTAA
Statistics
Matches: 73, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
24 20 0.27
25 53 0.73
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (25 bp):
GCTCATACGAGCTGAGAATCGGTAA
Found at i:26132688 original size:404 final size:404
Alignment explanation
Indices: 26131929--26132728 Score: 1268
Period size: 404 Copynumber: 2.0 Consensus size: 404
26131919 GCTGCAATTG
* * * *
26131929 GTAATCCCTAATGGCATGTCGTTTGTATCCTACGAATTCGTAAGGTTCAAACAAGACTTAGTAAT
1 GTAATCCCTAATGACATGTCATTTGTATCCTACGAATTCCTAAGGTTCAAACAAGACTCAGTAAT
* *
26131994 TTTCGTACGTCGTCGGATATACAATCATTATTTATACATGGTAATTATACGAATCACATACATAT
66 TGTCGTACGTCGTCGGATATACAATCAGTATTTATACATGGTAATTATACGAATCACATACATAT
26132059 AATTCAATTAAAAATATAAATACAAAATTTAATTACACAAACTTACCTCGACGAGTATACGTAGA
131 AATTCAATTAAAAATATAAATACAAAATTTAATTACACAAACTTACCTCGACGAGTATACGTAGA
* *
26132124 TACGAAGGCGATTAATCCGAGATTTTCTCTTTGTCTCGATCTAACTCTGTACGAGTTTTGGCTAG
196 TACGAAGGCGATTAATCCGAGA-TTTCTCTTTGTCTCGATCTAACTCTGTACGAGTTCTGACTAG
*
26132189 ATCTATACGGATAAATTTAACTCAATTTAATATATTTATCATTCAAATTAGTCCAAAACATATTT
260 ATCTACACGGATAAATTTAACTCAATTTAATATATTTATCATTCAAATTAGTCCAAAACATATTT
26132254 TTGAAAAATTTATCATTTTGCTCCTATACTTTTAATTTCTTTGCAATTTAGTCCCTAGGCTCAAA
325 TTGAAAAATTTATCATTTTGCTCCTATACTTTTAATTTCTTTGCAATTTAGTCCCTAGGCTCAAA
26132319 AAATGACTACAATCA
390 AAATGACTACAATCA
* * * ** *
26132334 GTAATCCCTAATGACATTTCATTTGTATCCTATGAATTCCTAAGTTTCAAACGGGACTCATTAAT
1 GTAATCCCTAATGACATGTCATTTGTATCCTACGAATTCCTAAGGTTCAAACAAGACTCAGTAAT
* *
26132399 TGTCGTACGTCGTCGGATATACGATCGGTATTTATACATGGTAATTATACGAATCACATACATAT
66 TGTCGTACGTCGTCGGATATACAATCAGTATTTATACATGGTAATTATACGAATCACATACATAT
* *
26132464 AATTCAATTAAAACATATAAATACACAATTTAATTACACAAACTTACCTCGACTAGTATACGTAG
131 AATTCAATTAAAA-ATATAAATACAAAATTTAATTACACAAACTTACCTCGACGAGTATACGTAG
*
26132529 ATACGGAGGCGATTAATCCGAGA-TTCTCTTTGGT-TCGATCTAACT-TCGTACGA-TGTCTGAC
195 ATACGAAGGCGATTAATCCGAGATTTCTCTTT-GTCTCGATCTAACTCT-GTACGAGT-TCTGAC
* * *
26132590 TGGATTTACACGGATAAATTTAACTCAATTTAATATATTTATCATTCAAATTAGTCTAAAACATA
257 TAGATCTACACGGATAAATTTAACTCAATTTAATATATTTATCATTCAAATTAGTCCAAAACATA
* *
26132655 TTTTTGTAAAATTTATCATTTTTC-CCTTATACTTTTAATTTCTTTGCAATTTAGTCCCTAGGCT
322 TTTTTGAAAAATTTATCATTTTGCTCC-TATACTTTTAATTTCTTTGCAATTTAGTCCCTAGGCT
* *
26132719 CGAAAGATGA
386 CAAAAAATGA
26132729 AATTCATGCA
Statistics
Matches: 363, Mismatches: 27, Indels: 11
0.91 0.07 0.03
Matches are distributed among these distances:
403 4 0.01
404 157 0.43
405 131 0.36
406 71 0.20
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.36
Consensus pattern (404 bp):
GTAATCCCTAATGACATGTCATTTGTATCCTACGAATTCCTAAGGTTCAAACAAGACTCAGTAAT
TGTCGTACGTCGTCGGATATACAATCAGTATTTATACATGGTAATTATACGAATCACATACATAT
AATTCAATTAAAAATATAAATACAAAATTTAATTACACAAACTTACCTCGACGAGTATACGTAGA
TACGAAGGCGATTAATCCGAGATTTCTCTTTGTCTCGATCTAACTCTGTACGAGTTCTGACTAGA
TCTACACGGATAAATTTAACTCAATTTAATATATTTATCATTCAAATTAGTCCAAAACATATTTT
TGAAAAATTTATCATTTTGCTCCTATACTTTTAATTTCTTTGCAATTTAGTCCCTAGGCTCAAAA
AATGACTACAATCA
Found at i:26144559 original size:6 final size:6
Alignment explanation
Indices: 26144550--26144575 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
26144540 GTCTCTTCTA
26144550 CTTCCC CTTCCC CTTCCC CTTCCC CT
1 CTTCCC CTTCCC CTTCCC CTTCCC CT
26144576 CCGCTTCTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35
Consensus pattern (6 bp):
CTTCCC
Found at i:26151142 original size:20 final size:20
Alignment explanation
Indices: 26151117--26151156 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
26151107 TTAGAATTTA
26151117 AAATAATAAATCAATAACAC
1 AAATAATAAATCAATAACAC
*
26151137 AAATAATAAATTAATAACAC
1 AAATAATAAATCAATAACAC
26151157 GTACTTGCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.65, C:0.12, G:0.00, T:0.23
Consensus pattern (20 bp):
AAATAATAAATCAATAACAC
Found at i:26153184 original size:23 final size:24
Alignment explanation
Indices: 26153149--26153193 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
26153139 CTTCAATCAT
*
26153149 TCTGCTTCAATTATCT-CAATTAAA
1 TCTGCATCAATTAT-TACAATTAAA
26153173 TCTGCATC-ATTATTACAATTA
1 TCTGCATCAATTATTACAATTA
26153194 TTGTGATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 1 0.05
23 11 0.58
24 7 0.37
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.42
Consensus pattern (24 bp):
TCTGCATCAATTATTACAATTAAA
Found at i:26161913 original size:34 final size:32
Alignment explanation
Indices: 26161833--26161915 Score: 80
Period size: 34 Copynumber: 2.5 Consensus size: 32
26161823 TCTCAAGGCT
*
26161833 GCAGCGCCTAATATATCCAACAGTTTCAAGATA
1 GCAG-GCCAAATATATCCAACAGTTTCAAGATA
* *
26161866 TGGCATGCCAAATATATCCAATAGTTTCAAGATCA
1 --GCAGGCCAAATATATCCAACAGTTTCAAGAT-A
26161901 -CAAGGCCAAA-ATATC
1 GC-AGGCCAAATATATC
26161916 TAAAATCAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
32 6 0.14
33 7 0.17
34 25 0.60
35 4 0.10
ACGTcount: A:0.39, C:0.23, G:0.14, T:0.24
Consensus pattern (32 bp):
GCAGGCCAAATATATCCAACAGTTTCAAGATA
Found at i:26169299 original size:27 final size:27
Alignment explanation
Indices: 26169269--26169326 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 27
26169259 TAATAGTAAT
26169269 AGTA-CAATATGGGCCTTAGCCCAATAC
1 AGTATCAATATGGGCCTTAGCCCAA-AC
* *
26169296 AGTATCAGTGTGGGCCTTAGCCCAAAC
1 AGTATCAATATGGGCCTTAGCCCAAAC
26169323 AGTA
1 AGTA
26169327 ACGGTGGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 10 0.36
28 18 0.64
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.22
Consensus pattern (27 bp):
AGTATCAATATGGGCCTTAGCCCAAAC
Found at i:26169490 original size:24 final size:24
Alignment explanation
Indices: 26169463--26169524 Score: 115
Period size: 24 Copynumber: 2.6 Consensus size: 24
26169453 AATACCCATA
26169463 CCAACCCTGCACTCCATCTCTTGT
1 CCAACCCTGCACTCCATCTCTTGT
26169487 CCAACCCTGCACTCCATCTCTTGT
1 CCAACCCTGCACTCCATCTCTTGT
*
26169511 CCAACCCTACACTC
1 CCAACCCTGCACTC
26169525 ATGTGGGGAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.19, C:0.48, G:0.06, T:0.26
Consensus pattern (24 bp):
CCAACCCTGCACTCCATCTCTTGT
Found at i:26169658 original size:22 final size:22
Alignment explanation
Indices: 26169628--26169679 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
26169618 AACGACTAAG
* * *
26169628 AGCCGTAAACAGGATAGCTATA
1 AGCCATAAACAGAATAGCTACA
* *
26169650 AGCTATAAACAGAATGGCTACA
1 AGCCATAAACAGAATAGCTACA
26169672 AGCCATAA
1 AGCCATAA
26169680 GTTTAGTAAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.17
Consensus pattern (22 bp):
AGCCATAAACAGAATAGCTACA
Found at i:26169706 original size:31 final size:32
Alignment explanation
Indices: 26169671--26169834 Score: 91
Period size: 32 Copynumber: 5.2 Consensus size: 32
26169661 GAATGGCTAC
* ** *
26169671 AAGCCATAAGT-TTAGTAATGTGATTGGCACA
1 AAGCCATAAGTAATAGTAACATGATCGGCACA
* *
26169702 AAGCCATTAGTAATGGTAACATGATCGGCACA
1 AAGCCATAAGTAATAGTAACATGATCGGCACA
* * * * * ***
26169734 AAGCCATCAGTAGCT-GTGATATAATCCATACA
1 AAGCCATAAGTA-ATAGTAACATGATCGGCACA
* * **
26169766 TAGCCATCAA-TAATAGTGACATGATCAACACA
1 AAGCCAT-AAGTAATAGTAACATGATCGGCACA
* * * *
26169798 AAGCCATCAGTAATGGTAATATGATCGGTACA
1 AAGCCATAAGTAATAGTAACATGATCGGCACA
26169830 AAGCC
1 AAGCC
26169835 GTCCATAGCA
Statistics
Matches: 99, Mismatches: 29, Indels: 9
0.72 0.21 0.07
Matches are distributed among these distances:
31 12 0.12
32 85 0.86
33 2 0.02
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (32 bp):
AAGCCATAAGTAATAGTAACATGATCGGCACA
Found at i:26169734 original size:32 final size:32
Alignment explanation
Indices: 26169691--26169834 Score: 119
Period size: 32 Copynumber: 4.5 Consensus size: 32
26169681 TTTAGTAATG
* *
26169691 TGATTGGCACAAAGCCATTAGTAATGGTAACA
1 TGATCGGCACAAAGCCATCAGTAATGGTAACA
* * *
26169723 TGATCGGCACAAAGCCATCAGTAGCT-GTGATA
1 TGATCGGCACAAAGCCATCAGTA-ATGGTAACA
* *** * * * *
26169755 TAATCCATACATAGCCATCAATAATAGTGACA
1 TGATCGGCACAAAGCCATCAGTAATGGTAACA
** *
26169787 TGATCAACACAAAGCCATCAGTAATGGTAATA
1 TGATCGGCACAAAGCCATCAGTAATGGTAACA
*
26169819 TGATCGGTACAAAGCC
1 TGATCGGCACAAAGCC
26169835 GTCCATAGCA
Statistics
Matches: 86, Mismatches: 24, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
31 1 0.01
32 84 0.98
33 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.23
Consensus pattern (32 bp):
TGATCGGCACAAAGCCATCAGTAATGGTAACA
Found at i:26170013 original size:24 final size:24
Alignment explanation
Indices: 26169998--26170119 Score: 147
Period size: 24 Copynumber: 5.1 Consensus size: 24
26169988 TCAGTCATAC
* *
26169998 AAATCACAGGCAAATCAATTATTT
1 AAATCACAGACAAATCAATCATTT
26170022 AAATCACAGACAAATCAATCATTT
1 AAATCACAGACAAATCAATCATTT
*
26170046 AAATCACAGTCAAAT-AAGTCATTT
1 AAATCACAGACAAATCAA-TCATTT
* * * *
26170070 ACATCTCGGAAAAATCAATCATTT
1 AAATCACAGACAAATCAATCATTT
* *
26170094 ACATCACAGGCAAATCAATCATTT
1 AAATCACAGACAAATCAATCATTT
26170118 AA
1 AA
26170120 CCCCAAGGGC
Statistics
Matches: 83, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
23 2 0.02
24 79 0.95
25 2 0.02
ACGTcount: A:0.46, C:0.20, G:0.07, T:0.27
Consensus pattern (24 bp):
AAATCACAGACAAATCAATCATTT
Found at i:26170060 original size:48 final size:48
Alignment explanation
Indices: 26169998--26170119 Score: 165
Period size: 48 Copynumber: 2.5 Consensus size: 48
26169988 TCAGTCATAC
* *
26169998 AAATCACAGGCAAATCAATTATTTAAATCACAGACAAATCAATCATTT
1 AAATCACAGGCAAATCAATCATTTAAATCACAGAAAAATCAATCATTT
* * * *
26170046 AAATCACAGTCAAAT-AAGTCATTTACATCTCGGAAAAATCAATCATTT
1 AAATCACAGGCAAATCAA-TCATTTAAATCACAGAAAAATCAATCATTT
*
26170094 ACATCACAGGCAAATCAATCATTTAA
1 AAATCACAGGCAAATCAATCATTTAA
26170120 CCCCAAGGGC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
47 2 0.03
48 59 0.94
49 2 0.03
ACGTcount: A:0.46, C:0.20, G:0.07, T:0.27
Consensus pattern (48 bp):
AAATCACAGGCAAATCAATCATTTAAATCACAGAAAAATCAATCATTT
Found at i:26170154 original size:26 final size:26
Alignment explanation
Indices: 26170080--26170147 Score: 72
Period size: 25 Copynumber: 2.7 Consensus size: 26
26170070 ACATCTCGGA
**
26170080 AAAATCAATCATTT-ACATCACA-GGC
1 AAAATCAATCATTTAACCCCA-AGGGC
26170105 -AAATCAATCATTTAACCCCAAGGGC
1 AAAATCAATCATTTAACCCCAAGGGC
*
26170130 AAAAT-AATCATTTTACCC
1 AAAATCAATCATTTAACCC
26170148 TATAGGGGCA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
24 14 0.38
25 19 0.51
26 4 0.11
ACGTcount: A:0.43, C:0.25, G:0.07, T:0.25
Consensus pattern (26 bp):
AAAATCAATCATTTAACCCCAAGGGC
Found at i:26170167 original size:27 final size:27
Alignment explanation
Indices: 26170137--26170596 Score: 408
Period size: 27 Copynumber: 17.1 Consensus size: 27
26170127 GGCAAAATAA
* * *
26170137 TCATTTTACCCTATAGGGGCATTATGG
1 TCATTTTACCCTACAGGGGTATTACGG
* ** * *
26170164 TCATCTTACCCTACAGTTGCATTACAG
1 TCATTTTACCCTACAGGGGTATTACGG
* * *
26170191 TCATTTTACCCTACAGAGGCATTACGA
1 TCATTTTACCCTACAGGGGTATTACGG
* * *
26170218 TCATTTTACCCTATAAGGGTATTACGA
1 TCATTTTACCCTACAGGGGTATTACGG
*
26170245 TCATTTTACCCTACAAGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* * * *
26170272 TCATTTTACCTTACAGGGGCATTATGA
1 TCATTTTACCCTACAGGGGTATTACGG
*
26170299 TCATTTTACCCTATAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* *
26170326 TCATTTTACCCTATAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* *
26170353 TCATTTTTCCCGACAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
** * *
26170380 TTGTTTTACCATACAGGGGAATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
*
26170407 TTATTTTACCCTACAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* *
26170434 TCATTTTACCCTTCAAGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* * *
26170461 TCATTTTACCCTA-TGAGGGTATTTCGA
1 TCATTTTACCCTACAG-GGGTATTACGG
** * * *
26170488 T-ATTTTACATTACGGGGGTATTTCGA
1 TCATTTTACCCTACAGGGGTATTACGG
* ** * * *
26170514 TCATTTTACCTTATGGGGGCATTTCGA
1 TCATTTTACCCTACAGGGGTATTACGG
* *
26170541 TCATTTTACCC-ATC-GAGGGTATTTCGA
1 TCATTTTACCCTA-CAG-GGGTATTACGG
* *
26170568 TCATTTTACCCTTC-GAGGGTATTTCGG
1 TCATTTTACCCTACAG-GGGTATTACGG
26170595 TC
1 TC
26170597 CAAATATCGA
Statistics
Matches: 367, Mismatches: 60, Indels: 12
0.84 0.14 0.03
Matches are distributed among these distances:
26 23 0.06
27 344 0.94
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTACGG
Found at i:26173975 original size:32 final size:32
Alignment explanation
Indices: 26173934--26174081 Score: 154
Period size: 32 Copynumber: 4.6 Consensus size: 32
26173924 TTCAGTAATG
*
26173934 TGATTGGCACAAAGCCATCAGTAACAGTAACA
1 TGATCGGCACAAAGCCATCAGTAACAGTAACA
* * * *
26173966 TGACCGGCACAAAGCCAACAGTAGCAGTGACA
1 TGATCGGCACAAAGCCATCAGTAACAGTAACA
** * * *
26173998 TGATCGATACACAA-CCATCAGTAACGGTGATA
1 TGATCGGCACA-AAGCCATCAGTAACAGTAACA
** *
26174030 TGATCGGCACAAAGCCATCAGTAATGGTAATA
1 TGATCGGCACAAAGCCATCAGTAACAGTAACA
*
26174062 TGATCGGCAGAAAGCCATCA
1 TGATCGGCACAAAGCCATCA
26174082 ATAGCATCGC
Statistics
Matches: 97, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
31 2 0.02
32 93 0.96
33 2 0.02
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.18
Consensus pattern (32 bp):
TGATCGGCACAAAGCCATCAGTAACAGTAACA
Found at i:26174110 original size:26 final size:26
Alignment explanation
Indices: 26174075--26174131 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
26174065 TCGGCAGAAA
*
26174075 GCCATCAATAGCATCGCAGCAAAGCT
1 GCCAGCAATAGCATCGCAGCAAAGCT
* * *
26174101 GCCAGCAATAGTATTGCAGCAAAGTT
1 GCCAGCAATAGCATCGCAGCAAAGCT
26174127 GCCAG
1 GCCAG
26174132 TAACAGTATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.33, C:0.26, G:0.23, T:0.18
Consensus pattern (26 bp):
GCCAGCAATAGCATCGCAGCAAAGCT
Found at i:26174139 original size:26 final size:26
Alignment explanation
Indices: 26174090--26174140 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
26174080 CAATAGCATC
*
26174090 GCAGCAAAGCTGCCAGCAATAGTATT
1 GCAGCAAAGCTGCCAGCAACAGTATT
* *
26174116 GCAGCAAAGTTGCCAGTAACAGTAT
1 GCAGCAAAGCTGCCAGCAACAGTAT
26174141 ATGTGGCCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.20
Consensus pattern (26 bp):
GCAGCAAAGCTGCCAGCAACAGTATT
Found at i:26174159 original size:27 final size:27
Alignment explanation
Indices: 26174128--26174187 Score: 88
Period size: 27 Copynumber: 2.2 Consensus size: 27
26174118 AGCAAAGTTG
26174128 CCAGTAACAGT-ATATGTGGCCA-AGCCA
1 CCAGTAACAGTGAT-TGTGG-CAGAGCCA
26174155 CCAGTAACAGTGATTGTGGCAGAGCCA
1 CCAGTAACAGTGATTGTGGCAGAGCCA
26174182 CCAGTA
1 CCAGTA
26174188 CAATACTTCC
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
26 2 0.06
27 27 0.87
28 2 0.06
ACGTcount: A:0.32, C:0.25, G:0.25, T:0.18
Consensus pattern (27 bp):
CCAGTAACAGTGATTGTGGCAGAGCCA
Found at i:26174289 original size:24 final size:25
Alignment explanation
Indices: 26174268--26174413 Score: 178
Period size: 24 Copynumber: 6.1 Consensus size: 25
26174258 TCAGTCATAC
26174268 AAATCACAGACAAATCTA-TCATTT
1 AAATCACAGACAAATCTAGTCATTT
*
26174292 AAATCACAGAAAAAT-TAGTCATTT
1 AAATCACAGACAAATCTAGTCATTT
26174316 AAATCACAGACAAATC-AGTCATTT
1 AAATCACAGACAAATCTAGTCATTT
26174340 AAATCACAGACAAATC-AGTCATTT
1 AAATCACAGACAAATCTAGTCATTT
* * *
26174364 ACATCTCGGACAAATC-AGTCATTT
1 AAATCACAGACAAATCTAGTCATTT
* ** *
26174388 ACATCACAGGTAAATC-AATCATTT
1 AAATCACAGACAAATCTAGTCATTT
26174412 AA
1 AA
26174414 CCTTGAGGGA
Statistics
Matches: 109, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
23 2 0.02
24 107 0.98
ACGTcount: A:0.45, C:0.20, G:0.08, T:0.27
Consensus pattern (25 bp):
AAATCACAGACAAATCTAGTCATTT
Found at i:26174320 original size:48 final size:48
Alignment explanation
Indices: 26174256--26174413 Score: 201
Period size: 48 Copynumber: 3.3 Consensus size: 48
26174246 CCATGCACAG
**
26174256 AATCAGTCATACAAATCACAGACAAATCTA-TCATTTAAATCACAGAAA
1 AATCAGTCATTTAAATCACAGACAAATC-AGTCATTTAAATCACAGAAA
* *
26174304 AATTAGTCATTTAAATCACAGACAAATCAGTCATTTAAATCACAGACA
1 AATCAGTCATTTAAATCACAGACAAATCAGTCATTTAAATCACAGAAA
* * * * **
26174352 AATCAGTCATTTACATCTCGGACAAATCAGTCATTTACATCACAGGTA
1 AATCAGTCATTTAAATCACAGACAAATCAGTCATTTAAATCACAGAAA
*
26174400 AATCAATCATTTAA
1 AATCAGTCATTTAA
26174414 CCTTGAGGGA
Statistics
Matches: 96, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
47 1 0.01
48 95 0.99
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.27
Consensus pattern (48 bp):
AATCAGTCATTTAAATCACAGACAAATCAGTCATTTAAATCACAGAAA
Found at i:26174344 original size:72 final size:72
Alignment explanation
Indices: 26174256--26174413 Score: 201
Period size: 72 Copynumber: 2.2 Consensus size: 72
26174246 CCATGCACAG
** *
26174256 AATCAGTCATACAAATCACAGACAAATCTA-TCATTTAAATCACAGAAAAATTAGTCATTTAAAT
1 AATCAGTCATTTAAATCACAGACAAATC-AGTCATTTAAATCACAGAAAAATCAGTCATTTAAAT
26174320 CACAGACA
65 CACAGACA
* * * * *
26174328 AATCAGTCATTTAAATCACAGACAAATCAGTCATTTACATCTCGGACAAATCAGTCATTTACATC
1 AATCAGTCATTTAAATCACAGACAAATCAGTCATTTAAATCACAGAAAAATCAGTCATTTAAATC
**
26174393 ACAGGTA
66 ACAGACA
*
26174400 AATCAATCATTTAA
1 AATCAGTCATTTAA
26174414 CCTTGAGGGA
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
71 1 0.01
72 73 0.99
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.27
Consensus pattern (72 bp):
AATCAGTCATTTAAATCACAGACAAATCAGTCATTTAAATCACAGAAAAATCAGTCATTTAAATC
ACAGACA
Found at i:26174466 original size:27 final size:27
Alignment explanation
Indices: 26174430--26174792 Score: 320
Period size: 27 Copynumber: 13.5 Consensus size: 27
26174420 GGGAAAAATA
*
26174430 GTCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * * * *
26174457 GTCATCTTACCCTACTGGAGCATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
26174484 ATCATTTTACCCTATA-AGG-ACTTACG
1 GTCATTTTACCCTACAGGGGTA-TTACG
* *
26174510 GTTATTTTACCCTATAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
26174537 GTCATTTTACCCTACAGGGGTATTGCG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
26174564 ATTATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * * ** *
26174591 GTTATTTTACCATATAGGGCCATTATG
1 GTCATTTTACCCTACAGGGGTATTACG
26174618 GTCATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * * *
26174645 ATCATTTTACCATACAAGGGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
26174672 GTTATTTTACCATATAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
** *
26174699 ACCATTTTATCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * * **
26174726 ATCATTTTACCATATAGGGGTATTTTG
1 GTCATTTTACCCTACAGGGGTATTACG
* * * *
26174753 GT-GTTCTACCCTAC-GGGATAATTTCG
1 GTCATTTTACCCTACAGGGGT-ATTACG
*
26174779 ATCATTTTACCCTA
1 GTCATTTTACCCTA
26174793 TGGGGGCATT
Statistics
Matches: 268, Mismatches: 63, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
25 5 0.02
26 33 0.12
27 229 0.85
28 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:26174621 original size:81 final size:81
Alignment explanation
Indices: 26174433--26174749 Score: 395
Period size: 81 Copynumber: 3.9 Consensus size: 81
26174423 AAAAATAGTC
* * * * * * * *
26174433 ATTTTACCCTACAGGGGCATTACGGTCATCTTACCCTACTGGAGCATTACAATCATTTTACCCTA
1 ATTTTACCATATAGGGGCATTACGGTCATTTTACCCTACAGGGGTATTACGATCATTTTACCATA
* *
26174498 TA-AGG-ACTTACGGTT
66 CAGGGGTA-TTACGGTT
* * * * *
26174513 ATTTTACCCTATAGGGGTATTACGGTCATTTTACCCTACAGGGGTATTGCGATTATTTTACCCTA
1 ATTTTACCATATAGGGGCATTACGGTCATTTTACCCTACAGGGGTATTACGATCATTTTACCATA
26174578 CAGGGGTATTACGGTT
66 CAGGGGTATTACGGTT
* *
26174594 ATTTTACCATATAGGGCCATTATGGTCATTTTACCCTACAGGGGTATTACGATCATTTTACCATA
1 ATTTTACCATATAGGGGCATTACGGTCATTTTACCCTACAGGGGTATTACGATCATTTTACCATA
* *
26174659 CAAGGGCATTACGGTT
66 CAGGGGTATTACGGTT
* ** *
26174675 ATTTTACCATATAGGGGTATTACGACCATTTTATCCTACAGGGGTATTACGATCATTTTACCATA
1 ATTTTACCATATAGGGGCATTACGGTCATTTTACCCTACAGGGGTATTACGATCATTTTACCATA
*
26174740 TAGGGGTATT
66 CAGGGGTATT
26174750 TTGGTGTTCT
Statistics
Matches: 206, Mismatches: 29, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
80 57 0.28
81 148 0.72
82 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (81 bp):
ATTTTACCATATAGGGGCATTACGGTCATTTTACCCTACAGGGGTATTACGATCATTTTACCATA
CAGGGGTATTACGGTT
Found at i:26174841 original size:54 final size:54
Alignment explanation
Indices: 26174780--26174899 Score: 179
Period size: 54 Copynumber: 2.2 Consensus size: 54
26174770 ATAATTTCGA
* * * *
26174780 TCATTTTACCCTATGGGGGCATTTCAGTTATTTTACCCATCGAGGGTATGTT-AG
1 TCATTTTACCCTAAGGGGGCATTTCAGTCATTTTACCAATCGAAGGTAT-TTCAG
*
26174834 TCATTTTACCCTAAGGGGGCATTTCTGTCATTTTACCAATCGAAGGTATTTCAG
1 TCATTTTACCCTAAGGGGGCATTTCAGTCATTTTACCAATCGAAGGTATTTCAG
26174888 TCATTTTACCCT
1 TCATTTTACCCT
26174900 TCGAGGGTAT
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
53 2 0.03
54 58 0.97
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.39
Consensus pattern (54 bp):
TCATTTTACCCTAAGGGGGCATTTCAGTCATTTTACCAATCGAAGGTATTTCAG
Found at i:26174903 original size:27 final size:27
Alignment explanation
Indices: 26174780--26174911 Score: 126
Period size: 27 Copynumber: 4.9 Consensus size: 27
26174770 ATAATTTCGA
* *
26174780 TCATTTTACCCTAT-GGGGGCATTTCAG
1 TCATTTTACCC-ATCGAGGGTATTTCAG
*
26174807 TTATTTTACCCATCGAGGGTATGTT-AG
1 TCATTTTACCCATCGAGGGTAT-TTCAG
* * * *
26174834 TCATTTTACCC-TAAGGGGGCATTTCTG
1 TCATTTTACCCAT-CGAGGGTATTTCAG
* *
26174861 TCATTTTACCAATCGAAGGTATTTCAG
1 TCATTTTACCCATCGAGGGTATTTCAG
*
26174888 TCATTTTACCCTTCGAGGGTATTT
1 TCATTTTACCCATCGAGGGTATTT
26174912 TGATCCAGAT
Statistics
Matches: 83, Mismatches: 17, Indels: 10
0.75 0.15 0.09
Matches are distributed among these distances:
26 5 0.06
27 75 0.90
28 3 0.04
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.39
Consensus pattern (27 bp):
TCATTTTACCCATCGAGGGTATTTCAG
Found at i:26176904 original size:64 final size:64
Alignment explanation
Indices: 26176796--26176922 Score: 182
Period size: 64 Copynumber: 2.0 Consensus size: 64
26176786 TACATAAGCA
* * * * * *
26176796 TCTGCGCCTTGAATAATCATTTTCTTGGCGGACACTGTATAAATTATTCTATTCTCCAATTCAG
1 TCTGCACCTTAAACAATCATTTTCTTGGCGGACACTGCAAAAATTATTCTATTCGCCAATTCAG
* *
26176860 TCTGCACCTTAAACAATCATTTTCTTGGTGGACACTGCAAAAATTATTCTATTCGCTAATTCA
1 TCTGCACCTTAAACAATCATTTTCTTGGCGGACACTGCAAAAATTATTCTATTCGCCAATTCA
26176923 ATTTGTTTAC
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
64 55 1.00
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.38
Consensus pattern (64 bp):
TCTGCACCTTAAACAATCATTTTCTTGGCGGACACTGCAAAAATTATTCTATTCGCCAATTCAG
Found at i:26178363 original size:22 final size:21
Alignment explanation
Indices: 26178333--26178391 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
26178323 ATACAATCGT
*
26178333 AGATTTGATATGTAATCTTAGG
1 AGATTTGATTTGTAATCTTA-G
*
26178355 AGATATGATTTTGTAAATCTTAG
1 AGATTTGA-TTTGT-AATCTTAG
26178378 AGATTTGATTTGTA
1 AGATTTGATTTGTA
26178392 GATACCATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 1 0.03
22 12 0.38
23 12 0.38
24 7 0.22
ACGTcount: A:0.32, C:0.03, G:0.20, T:0.44
Consensus pattern (21 bp):
AGATTTGATTTGTAATCTTAG
Found at i:26183425 original size:22 final size:21
Alignment explanation
Indices: 26183395--26183453 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
26183385 ATACAATCGT
*
26183395 AGATTTGATATGTAATCTTAGG
1 AGATTTGATTTGTAATCTTA-G
*
26183417 AGATATGATTTTGTAAATCTTAG
1 AGATTTGA-TTTGT-AATCTTAG
26183440 AGATTTGATTTGTA
1 AGATTTGATTTGTA
26183454 GATACCATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 1 0.03
22 12 0.38
23 12 0.38
24 7 0.22
ACGTcount: A:0.32, C:0.03, G:0.20, T:0.44
Consensus pattern (21 bp):
AGATTTGATTTGTAATCTTAG
Found at i:26185010 original size:49 final size:50
Alignment explanation
Indices: 26184946--26185166 Score: 153
Period size: 50 Copynumber: 4.3 Consensus size: 50
26184936 TCCATGTCGT
*
26184946 AGACATGGTCTTACAT-GAGATGTT-TCTTAT-ACTGCCAATGCCATATCCC
1 AGACATGGTCTTACATAG-GA-GTTCTCATATCACTGCCAATGCCATATCCC
* * * * *
26184995 AGATATGTTCTTACATAGGAGTTCTCATATCAGTGCCCATGCCATGTCCC
1 AGACATGGTCTTACATAGGAGTTCTCATATCACTGCCAATGCCATATCCC
*** ** * ** * *
26185045 AGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAACGCCATGTCCC
1 AGACATGGTCTTACATAGGAGTTCTCATATCACTGCCAATGCCATATCCC
** * *
26185095 AGACATGGTCTTACAT-GAGACCTCTCATAACTTCAATGATACCAATGCCATGTCCC
1 AGACATGGTCTTACATAG-GAGTTCTCAT-A--TCACTG---CCAATGCCATATCCC
26185151 AGACATGGTCTTACAT
1 AGACATGGTCTTACAT
26185167 GGGATCTCGT
Statistics
Matches: 139, Mismatches: 23, Indels: 13
0.79 0.13 0.07
Matches are distributed among these distances:
48 3 0.02
49 22 0.16
50 80 0.58
53 4 0.03
56 30 0.22
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (50 bp):
AGACATGGTCTTACATAGGAGTTCTCATATCACTGCCAATGCCATATCCC
Found at i:26185045 original size:50 final size:50
Alignment explanation
Indices: 26184978--26185166 Score: 191
Period size: 50 Copynumber: 3.7 Consensus size: 50
26184968 TTTCTTATAC
* * * **
26184978 TGCCAATGCCATATCCCAGATATGTTCTTACATAGGAGTTCTCATATCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATAGGACCTCTCATATCAG
* *** * *
26185028 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATAGGACCTCTCATATCAG
*
26185078 TGCCAACGCCATGTCCCAGACATGGTCTTACAT-GAGACCTCTCATAACTTCAATG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATAG-GACCTCTCAT-A--TC-A-G
*
26185133 ATACCAATGCCATGTCCCAGACATGGTCTTACAT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAT
26185167 GGGATCTCGT
Statistics
Matches: 113, Mismatches: 19, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
49 1 0.01
50 78 0.69
53 2 0.02
55 1 0.01
56 31 0.27
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATAGGACCTCTCATATCAG
Found at i:26185802 original size:6 final size:6
Alignment explanation
Indices: 26185793--26185846 Score: 74
Period size: 6 Copynumber: 9.2 Consensus size: 6
26185783 ATAAAATCGA
* * *
26185793 TTTTGA TTTTG- TTTTGC TTTTGC TTTTGC TTTTGC TGTTGC TTTTAC
1 TTTTGC TTTTGC TTTTGC TTTTGC TTTTGC TTTTGC TTTTGC TTTTGC
26185840 TTTTGC T
1 TTTTGC T
26185847 AAAATTTGGA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
5 5 0.12
6 38 0.88
ACGTcount: A:0.04, C:0.13, G:0.17, T:0.67
Consensus pattern (6 bp):
TTTTGC
Found at i:26188448 original size:102 final size:101
Alignment explanation
Indices: 26188272--26188657 Score: 453
Period size: 102 Copynumber: 3.8 Consensus size: 101
26188262 CGATGAACAT
* * *
26188272 GTGTGTAGTACTGTGTGGAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTACTAA
1 GTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGTAAAT-ATGATCACATGTGTAGTACTAA
*
26188337 GTGAAGGCTACTATGTGTACCGAAAAGCTTTGAGCAC
65 GTGAAGGCTACTATGTGTACCGAAAAGCTTTGATCAC
* * *
26188374 GTGTGTAGTACTGTGTGAATGCTACTACGTGTATCGGTAAACTATGGTTACATGTGTAGTACTAA
1 GTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGTAAA-TATGATCACATGTGTAGTACTAA
* *
26188439 GTGAAGGCTACAATGGGTACCGAAAAGCTTTGATCAC
65 GTGAAGGCTACTATGTGTACCGAAAAGCTTTGATCAC
* * * * *
26188476 GTATGTAGTACTATGTGAAGGCTACTACGTG-AGCCGTAAA-ACTTGATCACGTGTGTAGTACTA
1 GTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGTAAATA--TGATCACATGTGTAGTACTA
* *
26188539 TGTGAAGGCTACTAAGTG-AGCCGTAAAA-C-TTGATCAC
64 AGTGAAGGCTACTATGTGTA-CCG-AAAAGCTTTGATCAC
* * * * * *
26188576 ATGTGTAGTACTGTATGAAGGCTACTACGTGAAT-TGTAAA-ACTGATCACGTGTGTAGTACTAT
1 GTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGTAAATA-TGATCACATGTGTAGTACTAA
*
26188639 GTGAAGGCTACTACGTGTA
65 GTGAAGGCTACTATGTGTA
26188658 TCTAATGATA
Statistics
Matches: 250, Mismatches: 27, Indels: 16
0.85 0.09 0.05
Matches are distributed among these distances:
99 38 0.15
100 43 0.17
101 43 0.17
102 125 0.50
103 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (101 bp):
GTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGTAAATATGATCACATGTGTAGTACTAAG
TGAAGGCTACTATGTGTACCGAAAAGCTTTGATCAC
Found at i:26188539 original size:50 final size:50
Alignment explanation
Indices: 26188272--26188657 Score: 390
Period size: 51 Copynumber: 7.7 Consensus size: 50
26188262 CGATGAACAT
* * * * *
26188272 GTGTGTAGTACTGTGTGGAGGCTACTACGTGTATCGATAAATA-ATGGTCAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTACCG-TAAA-ACTTGATCAC
* * * *
26188323 ATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCG-AAAAGCTTTGAGCAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGTAAAA-C-TTGATCAC
* * * * *
26188374 GTGTGTAGTACTGTGTGAATGCTACTACGTGTATCGGT-AAACTATGGTTAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTA-CCGTAAAACT-TGATCAC
* * * * *
26188425 ATGTGTAGTACTAAGTGAAGGCTACAATGGGTACCG-AAAAGCTTTGATCAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGTAAAA-C-TTGATCAC
*
26188476 GTATGTAGTACTATGTGAAGGCTACTACGTG-AGCCGTAAAACTTGATCAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTA-CCGTAAAACTTGATCAC
*
26188526 GTGTGTAGTACTATGTGAAGGCTACTAAGTG-AGCCGTAAAACTTGATCAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTA-CCGTAAAACTTGATCAC
* * * * **
26188576 ATGTGTAGTACTGTATGAAGGCTACTACGTGAATTGTAAAAC-TGATCAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGTAAAACTTGATCAC
26188625 GTGTGTAGTACTATGTGAAGGCTACTACGTGTA
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTA
26188658 TCTAATGATA
Statistics
Matches: 277, Mismatches: 46, Indels: 26
0.79 0.13 0.07
Matches are distributed among these distances:
48 1 0.00
49 39 0.14
50 97 0.35
51 130 0.47
52 10 0.04
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (50 bp):
GTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGTAAAACTTGATCAC
Found at i:26191202 original size:120 final size:120
Alignment explanation
Indices: 26191078--26191432 Score: 674
Period size: 120 Copynumber: 3.0 Consensus size: 120
26191068 TAGATTATAA
* *
26191078 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTTATATAAGAATATTTAATATTAAG
1 ATTATATTTTATAGTATTATATATTATGATTATAGTAAATTCATATAAGAATATTTAATATTAAG
26191143 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAG
66 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAG
26191198 ATTATATTTTATAGTATTATATATTATGATTATAGTAAATTCATATAAGAATATTTAATATTAAG
1 ATTATATTTTATAGTATTATATATTATGATTATAGTAAATTCATATAAGAATATTTAATATTAAG
*
26191263 AATTTTATTAAATTATATATTTTTAATAAATTATATTTAATAATAATTATTTTAG
66 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAG
*
26191318 ATTATATTTTATAGTATTATATATTATGATTATAGTAAATTCATAGAAGAATATTTAATATTAAG
1 ATTATATTTTATAGTATTATATATTATGATTATAGTAAATTCATATAAGAATATTTAATATTAAG
26191383 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTAT
66 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTAT
26191433 GTTAAAATAT
Statistics
Matches: 230, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 230 1.00
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.52
Consensus pattern (120 bp):
ATTATATTTTATAGTATTATATATTATGATTATAGTAAATTCATATAAGAATATTTAATATTAAG
AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAG
Found at i:26191400 original size:59 final size:58
Alignment explanation
Indices: 26191097--26191418 Score: 238
Period size: 56 Copynumber: 5.4 Consensus size: 58
26191087 TATAGTATTA
26191097 TATATTATGATTTTAGTAAATTTATATAAGAATATTTAATATTAAGAATTTTATTAAAT
1 TATATTATGATTTTAGTAAA-TTATATAAGAATATTTAATATTAAGAATTTTATTAAAT
* * * * * *
26191156 TATA-TAT--TTTTATTAAATTATATTTAATAATAATT-ATTTTAGATTATATTTTA-TAGTATT
1 TATATTATGATTTTAGTAAATTATA--TAAGAATATTTAATATTA-A-GA-ATTTTATTA--AAT
*
26191216 ATATATTATGATTATAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAAT
1 -TATATTATGATTTTAGTAAATT-ATATAAGAATATTTAATATTAAGAATTTTATTAAAT
* * * * * *
26191276 TATA-TAT--TTTTAATAAATTATATTTAATAATAATT-ATTTTAGATTATATTTTA-TAGTATT
1 TATATTATGATTTTAGTAAATTATA--TAAGAATATTTAATATTA-A-GA-ATTTTATTA--AAT
* *
26191336 ATATATTATGATTATAGTAAATTCATAGAAGAATATTTAATATTAAGAATTTTATTAAAT
1 -TATATTATGATTTTAGTAAATT-ATATAAGAATATTTAATATTAAGAATTTTATTAAAT
*
26191396 TATA-TAT--TTTTATTAAATTATAT
1 TATATTATGATTTTAGTAAATTATAT
26191419 TTAATAATAA
Statistics
Matches: 204, Mismatches: 31, Indels: 60
0.69 0.11 0.20
Matches are distributed among these distances:
55 11 0.05
56 39 0.19
57 20 0.10
58 15 0.07
59 24 0.12
60 8 0.04
61 20 0.10
62 12 0.06
63 19 0.09
64 30 0.15
65 6 0.03
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.51
Consensus pattern (58 bp):
TATATTATGATTTTAGTAAATTATATAAGAATATTTAATATTAAGAATTTTATTAAAT
Found at i:26191666 original size:45 final size:44
Alignment explanation
Indices: 26191577--26191669 Score: 109
Period size: 44 Copynumber: 2.1 Consensus size: 44
26191567 ATTACAACAT
* * *
26191577 CATTCCATTTAACCAAACACAATAATACTATTACAGTTCTATTC
1 CATTCCATTCAACCAAACACAATAATACTATTACAGCTATATTC
*
26191621 CATTCCATTCAACCAAACA-ATTGAATTACTATTAC-GACTATATTC
1 CATTCCATTCAACCAAACACAAT-AA-TACTATTACAG-CTATATTC
26191666 CATT
1 CATT
26191670 ACACCTCTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
43 2 0.05
44 21 0.50
45 19 0.45
ACGTcount: A:0.38, C:0.25, G:0.03, T:0.34
Consensus pattern (44 bp):
CATTCCATTCAACCAAACACAATAATACTATTACAGCTATATTC
Found at i:26191705 original size:16 final size:16
Alignment explanation
Indices: 26191661--26191706 Score: 74
Period size: 16 Copynumber: 2.9 Consensus size: 16
26191651 ATTACGACTA
*
26191661 TATTCCATTACACCTC
1 TATTCCATTACAGCTC
*
26191677 TATTCCATTACAGTTC
1 TATTCCATTACAGCTC
26191693 TATTCCATTACAGC
1 TATTCCATTACAGC
26191707 AAACCAAACG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.26, C:0.30, G:0.04, T:0.39
Consensus pattern (16 bp):
TATTCCATTACAGCTC
Found at i:26212177 original size:25 final size:25
Alignment explanation
Indices: 26212112--26212183 Score: 81
Period size: 25 Copynumber: 2.9 Consensus size: 25
26212102 CAGGCCTATT
*
26212112 TTCACAGCTCGGGTGAGCATATTTA
1 TTCACAGCTCGCGTGAGCATATTTA
* * **
26212137 TTCAGAACTCATGTGAGCATATTTA
1 TTCACAGCTCGCGTGAGCATATTTA
* *
26212162 TTCATAGCTCGCGTGAACATAT
1 TTCACAGCTCGCGTGAGCATAT
26212184 ATGTAAAGGA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33
Consensus pattern (25 bp):
TTCACAGCTCGCGTGAGCATATTTA
Found at i:26220677 original size:43 final size:43
Alignment explanation
Indices: 26220487--26220725 Score: 146
Period size: 43 Copynumber: 5.6 Consensus size: 43
26220477 TCTAGTACGT
* ** * *
26220487 TAGTGCATCATCGGATAAACTGAA-CAAAATATAATGGCACACA
1 TAGTGCATCATCAGATAAACCAAAGC-AAATATACTAGCACACA
* * ** * * *
26220530 TAATGCATCATCGGGA-AAGTCGAAGTAATTATACTAGCACACGA
1 TAGTGCATCATC-AGATAAACCAAAGCAAATATACTAGCACAC-A
* * * * * * * * *
26220574 -AGGGCATCATCAAACAGACCGAAGTAATTATATTGGCACACA
1 TAGTGCATCATCAGATAAACCAAAGCAAATATACTAGCACACA
* *
26220616 TAGTGCATCATCAGATAAATCTAAGC-AATCATACTAGCACACA
1 TAGTGCATCATCAGATAAACCAAAGCAAAT-ATACTAGCACACA
* * *
26220659 TAGTGCATTATCATATAAACCAAAGCAAATATACTAGCACTCA
1 TAGTGCATCATCAGATAAACCAAAGCAAATATACTAGCACACA
* *
26220702 TAATGCATCAT-TGACTAAACCAAA
1 TAGTGCATCATCAGA-TAAACCAAA
26220726 AGTATAAACC
Statistics
Matches: 152, Mismatches: 36, Indels: 16
0.75 0.18 0.08
Matches are distributed among these distances:
42 5 0.03
43 140 0.92
44 7 0.05
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.23
Consensus pattern (43 bp):
TAGTGCATCATCAGATAAACCAAAGCAAATATACTAGCACACA
Found at i:26225245 original size:9 final size:9
Alignment explanation
Indices: 26225231--26225352 Score: 103
Period size: 8 Copynumber: 13.7 Consensus size: 9
26225221 AAGTGTCTTT
26225231 ATTTTTATA
1 ATTTTTATA
*
26225240 ATTTTT-TT
1 ATTTTTATA
*
26225248 AGTTTTATA
1 ATTTTTATA
26225257 TATTTTTATAA
1 -ATTTTTAT-A
26225268 TATTTTTAATA
1 -ATTTTT-ATA
26225279 ATTTTTAT-
1 ATTTTTATA
*
26225287 ATTTTCATA
1 ATTTTTATA
*
26225296 TTTTTTCATA
1 ATTTTT-ATA
*
26225306 ATTTATAT-
1 ATTTTTATA
26225314 ATTTTT-TA
1 ATTTTTATA
26225322 ATTTTT-TA
1 ATTTTTATA
26225330 ATTTTT-TA
1 ATTTTTATA
*
26225338 ATTTTAATA
1 ATTTTTATA
26225347 ATTTTT
1 ATTTTT
26225353 GACTCAGTTA
Statistics
Matches: 93, Mismatches: 12, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
7 1 0.01
8 39 0.42
9 22 0.24
10 20 0.22
11 9 0.10
12 2 0.02
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.68
Consensus pattern (9 bp):
ATTTTTATA
Found at i:26225260 original size:27 final size:28
Alignment explanation
Indices: 26225230--26225548 Score: 137
Period size: 27 Copynumber: 11.3 Consensus size: 28
26225220 TAAGTGTCTT
*
26225230 TATTTTTATAATTTTTT-TAGTTTTATA
1 TATTTTTATAATTTTTTATAATTTTATA
26225257 TATTTTTATAATATTTTTAATAATTTT-TA
1 TATTTTTATAAT-TTTTT-ATAATTTTATA
*
26225286 TATTTTCAT-ATTTTTTCATAA-TTTATA
1 TATTTTTATAATTTTTT-ATAATTTTATA
*
26225313 TATTTTT-TAA-TTTTT-TAATTTTTTA
1 TATTTTTATAATTTTTTATAATTTTATA
* * * *
26225338 -ATTTTAATAATTTTTGACTCA-GTTATAA
1 TATTTTTATAATTTTTTA-TAATTTTAT-A
* * ** *
26225366 TAATTTTTTTAACTTATATGCTAATTTTTTAA
1 T-ATTTTTATAA-TT-TTTTATAATTTTAT-A
*
26225398 TATTTTGTA-AA-TTTTAATAAGTTTT-TA
1 TATTTT-TATAATTTTTTATAA-TTTTATA
* * *
26225425 TGTTTTTA-ATTTTTTTAT-ATTTTAAAA
1 TATTTTTATAATTTTTTATAATTTT-ATA
* * **
26225452 TATTATCATAATTTTTGTAATTTTTTTATCA
1 TATTTTTATAATTTTT-T-ATAATTTTAT-A
** *
26225483 TAATTCATATAATTTTTTATATATTTTTTA
1 T-ATTTTTATAATTTTTTATA-ATTTTATA
* * *
26225513 -ATTTTTTTACTTTTCTATAATTTTATAA
1 TATTTTTATAATTTTTTATAATTTTAT-A
26225541 TATTTTTA
1 TATTTTTA
26225549 ATAAGGTACT
Statistics
Matches: 218, Mismatches: 44, Indels: 58
0.68 0.14 0.18
Matches are distributed among these distances:
24 8 0.04
25 12 0.06
26 17 0.08
27 57 0.26
28 37 0.17
29 22 0.10
30 20 0.09
31 23 0.11
32 22 0.10
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (28 bp):
TATTTTTATAATTTTTTATAATTTTATA
Found at i:26225280 original size:39 final size:38
Alignment explanation
Indices: 26225230--26225307 Score: 106
Period size: 39 Copynumber: 2.0 Consensus size: 38
26225220 TAAGTGTCTT
*
26225230 TATTTTTATAATTTTTTTAGTTTT-ATATATTTTT-ATAA
1 TATTTTTATAATTTTTATA-TTTTCATAT-TTTTTCATAA
26225268 TATTTTTAATAATTTTTATATTTTCATATTTTTTCATAA
1 TATTTTT-ATAATTTTTATATTTTCATATTTTTTCATAA
26225307 T
1 T
26225308 TTATATATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
38 16 0.44
39 20 0.56
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (38 bp):
TATTTTTATAATTTTTATATTTTCATATTTTTTCATAA
Found at i:26225325 original size:16 final size:16
Alignment explanation
Indices: 26225228--26225352 Score: 90
Period size: 17 Copynumber: 7.1 Consensus size: 16
26225218 TATAAGTGTC
*
26225228 TTTATTTTTATAATTTT
1 TTTAATTTTATAA-TTT
*
26225245 TTTAGTTTTATATATTT
1 TTTAATTTTATA-ATTT
*
26225262 TTATAATATTTTTAATAATT
1 TT-TAAT-TTTATAAT--TT
26225282 TTTATATTTTCAT-ATTT
1 TTTA-ATTTT-ATAATTT
*
26225299 TTTCATAATTTATATATTT
1 TTT-A-ATTTTATA-ATTT
*
26225318 TTTAATTTTTTAATTT
1 TTTAATTTTATAATTT
26225334 TTTAATTTTAATAATTT
1 TTTAATTTT-ATAATTT
26225351 TT
1 TT
26225353 GACTCAGTTA
Statistics
Matches: 89, Mismatches: 8, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
16 13 0.15
17 37 0.42
18 13 0.15
19 19 0.21
20 7 0.08
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.69
Consensus pattern (16 bp):
TTTAATTTTATAATTT
Found at i:26225480 original size:23 final size:22
Alignment explanation
Indices: 26225454--26225521 Score: 79
Period size: 23 Copynumber: 3.1 Consensus size: 22
26225444 TTTTAAAATA
26225454 TTATCATAATTTTTGTAATTTTT
1 TTATCATAATTTTT-TAATTTTT
* *
26225477 TTATCATAATTCATATAA-TTTT
1 TTATCATAATT-TTTTAATTTTT
26225499 TTAT-AT-ATTTTTTAATTTTT
1 TTATCATAATTTTTTAATTTTT
26225519 TTA
1 TTA
26225522 CTTTTCTATA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
19 4 0.10
20 10 0.26
21 2 0.05
22 8 0.21
23 14 0.36
24 1 0.03
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.65
Consensus pattern (22 bp):
TTATCATAATTTTTTAATTTTT
Found at i:26225533 original size:19 final size:19
Alignment explanation
Indices: 26225427--26225550 Score: 64
Period size: 19 Copynumber: 6.5 Consensus size: 19
26225417 AGTTTTTATG
26225427 TTTT-TAATTTTTT-TATA
1 TTTTATAATTTTTTATATA
* * *
26225444 TTTTAAAATATTATCATA-A
1 TTTTATAAT-TTTTTATATA
*
26225463 TTTTTGTAATTTTTTTATCATAA
1 -TTTTATAA-TTTTTTAT-AT-A
*
26225486 TTCATATAATTTTTTATATA
1 TT-TTATAATTTTTTATATA
*
26225506 TTTTTTAATTTTTT-TACT-
1 TTTTATAATTTTTTATA-TA
*
26225524 TTTCTATAATTTTATA-ATA
1 TTT-TATAATTTTTTATATA
26225543 TTTT-TAAT
1 TTTTATAAT
26225551 AAGGTACTCT
Statistics
Matches: 81, Mismatches: 13, Indels: 26
0.68 0.11 0.22
Matches are distributed among these distances:
17 8 0.10
18 10 0.12
19 28 0.35
20 16 0.20
21 4 0.05
22 10 0.12
23 5 0.06
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.65
Consensus pattern (19 bp):
TTTTATAATTTTTTATATA
Found at i:26225624 original size:9 final size:9
Alignment explanation
Indices: 26225604--26225672 Score: 50
Period size: 10 Copynumber: 7.2 Consensus size: 9
26225594 AAATTTTCAG
26225604 TTTTATATTT
1 TTTTATA-TT
26225614 TTTTATATT
1 TTTTATATT
* *
26225623 TTTCA-AAT
1 TTTTATATT
26225631 TTTTAGTATT
1 TTTTA-TATT
*
26225641 TGTTTATGTT
1 T-TTTATATT
*
26225651 TTTCTATAAT
1 TTT-TATATT
26225661 TTTTATGATT
1 TTTTAT-ATT
26225671 TT
1 TT
26225673 GAGTATAAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 10
0.72 0.12 0.16
Matches are distributed among these distances:
8 6 0.13
9 11 0.24
10 25 0.54
11 4 0.09
ACGTcount: A:0.22, C:0.03, G:0.06, T:0.70
Consensus pattern (9 bp):
TTTTATATT
Found at i:26225640 original size:28 final size:29
Alignment explanation
Indices: 26225604--26225671 Score: 86
Period size: 28 Copynumber: 2.3 Consensus size: 29
26225594 AAATTTTCAG
*
26225604 TTTTATATTTTTTTATATTTTTC-A-AAT
1 TTTTATATTTGTTTATATTTTTCTATAAT
*
26225631 TTTTAGTATTTGTTTATGTTTTTCTATAAT
1 TTTTA-TATTTGTTTATATTTTTCTATAAT
26225661 TTTTATGATTT
1 TTTTAT-ATTT
26225672 TGAGTATAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
27 5 0.14
28 16 0.46
29 2 0.06
30 12 0.34
ACGTcount: A:0.22, C:0.03, G:0.06, T:0.69
Consensus pattern (29 bp):
TTTTATATTTGTTTATATTTTTCTATAAT
Found at i:26225805 original size:31 final size:31
Alignment explanation
Indices: 26225768--26225844 Score: 127
Period size: 31 Copynumber: 2.5 Consensus size: 31
26225758 CAAAGAGCTT
*
26225768 AATTGATTGAAAAATTGACATTTAGGGATTG
1 AATTGATTGAAAAATTGACATTTAGAGATTG
26225799 AATTGATTGAAAAATTGACATTTAGAGATTG
1 AATTGATTGAAAAATTGACATTTAGAGATTG
*
26225830 AATTGAGTGTAAAAA
1 AATTGATTG-AAAAA
26225845 AATATTGGGG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
31 38 0.88
32 5 0.12
ACGTcount: A:0.43, C:0.03, G:0.21, T:0.34
Consensus pattern (31 bp):
AATTGATTGAAAAATTGACATTTAGAGATTG
Found at i:26232367 original size:42 final size:42
Alignment explanation
Indices: 26232284--26232368 Score: 116
Period size: 42 Copynumber: 2.0 Consensus size: 42
26232274 GTTGATATAT
* * * **
26232284 TTTGTGAAAACGAATGTCGTATCTTGCTTCTTTTGTGCCCTA
1 TTTGAGAAAACCAATGTCATATCTTGCTTCTCCTGTGCCCTA
*
26232326 TTTGAGAAAACCAATGTCATATCTTGCTTCTCCTGTTCCCTA
1 TTTGAGAAAACCAATGTCATATCTTGCTTCTCCTGTGCCCTA
26232368 T
1 T
26232369 CTTTTTATCA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.21, C:0.22, G:0.15, T:0.41
Consensus pattern (42 bp):
TTTGAGAAAACCAATGTCATATCTTGCTTCTCCTGTGCCCTA
Found at i:26242930 original size:15 final size:15
Alignment explanation
Indices: 26242907--26242936 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26242897 AAAGTAACCC
*
26242907 TCTCTGAGAAGTGAA
1 TCTCGGAGAAGTGAA
26242922 TCTCGGAGAAGTGAA
1 TCTCGGAGAAGTGAA
26242937 ACAACACACT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.13, G:0.30, T:0.23
Consensus pattern (15 bp):
TCTCGGAGAAGTGAA
Found at i:26244877 original size:50 final size:50
Alignment explanation
Indices: 26244737--26244980 Score: 337
Period size: 50 Copynumber: 4.8 Consensus size: 50
26244727 GATAATAACA
* ** *
26244737 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
** * *
26244788 TGTCC-ATTCCATAATCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
1 TG-CCAACGCCAT-GTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
26244839 TGCCAACGCCATGTCCAAGACATGGTCTTACATAGGACCTCTCATCTCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
26244889 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
26244939 TGCCAACGCCATGTCCCATACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
26244981 TTACCCAAAT
Statistics
Matches: 171, Mismatches: 19, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
50 122 0.71
51 24 0.14
52 25 0.15
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Done.