Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 86 of 240
Found at i:27105083 original size:21 final size:21
Alignment explanation
Indices: 27105040--27105083 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
27105030 GTTTAGTTAC
*
27105040 TTTTAATTAATCATAATTTAT
1 TTTTAATTAATCATAATTAAT
*
27105061 TTTTAATTAA-CATTTATTAAT
1 TTTTAATTAATCA-TAATTAAT
27105082 TT
1 TT
27105084 ATTTAATCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTTAATTAATCATAATTAAT
Found at i:27108378 original size:19 final size:19
Alignment explanation
Indices: 27108354--27108392 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
27108344 AGGAATGAAA
27108354 GCAGTTGTGGTAGTTAGCT
1 GCAGTTGTGGTAGTTAGCT
27108373 GCAGTTGTGGTAGTTAGCT
1 GCAGTTGTGGTAGTTAGCT
27108392 G
1 G
27108393 GTATTCTGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.15, C:0.10, G:0.38, T:0.36
Consensus pattern (19 bp):
GCAGTTGTGGTAGTTAGCT
Found at i:27115097 original size:18 final size:18
Alignment explanation
Indices: 27115076--27115114 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
27115066 TTGCTTCAAC
* *
27115076 TTCTTTTTCAAATTTCTT
1 TTCTGTTTCAAATTCCTT
*
27115094 TTCTGTTTCACATTCCTT
1 TTCTGTTTCAAATTCCTT
27115112 TTC
1 TTC
27115115 ACTCTCAATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.13, C:0.23, G:0.03, T:0.62
Consensus pattern (18 bp):
TTCTGTTTCAAATTCCTT
Found at i:27117839 original size:16 final size:16
Alignment explanation
Indices: 27117818--27117853 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
27117808 TTTGGTTCGC
*
27117818 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAAG
27117834 TGTATTGGATTAGAAG
1 TGTATTGGATTAGAAG
27117850 TGTA
1 TGTA
27117854 ATAGCAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.33, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAGAAG
Found at i:27118110 original size:18 final size:17
Alignment explanation
Indices: 27118089--27118123 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
27118079 TTATTATTAA
*
27118089 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
27118107 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
27118124 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:27118181 original size:16 final size:16
Alignment explanation
Indices: 27118160--27118194 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
27118150 TGGTAAATTA
27118160 TTAAATATTGTTATTG
1 TTAAATATTGTTATTG
27118176 TTAAATATTGTTATTG
1 TTAAATATTGTTATTG
27118192 TTA
1 TTA
27118195 TTTAATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.11, T:0.57
Consensus pattern (16 bp):
TTAAATATTGTTATTG
Found at i:27118181 original size:24 final size:24
Alignment explanation
Indices: 27118140--27118218 Score: 62
Period size: 24 Copynumber: 3.5 Consensus size: 24
27118130 TAATGAGCAG
*
27118140 AAAT-TTGTT-TTGGTAAATTATT
1 AAATATTGTTATTGTTAAATTATT
27118162 AAATATTGTTATTGTTAAA-TATT
1 AAATATTGTTATTGTTAAATTATT
** *
27118185 -GTTATTGTTA-T-TTAATATATAAT
1 AAATATTGTTATTGTTAA-AT-TATT
27118208 AAATATTGTTA
1 AAATATTGTTA
27118219 ATAATTAATA
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
20 4 0.09
21 2 0.04
22 12 0.27
23 12 0.27
24 15 0.33
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (24 bp):
AAATATTGTTATTGTTAAATTATT
Found at i:27118377 original size:14 final size:15
Alignment explanation
Indices: 27118338--27118379 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
27118328 TTTAAGTATA
*
27118338 ATTATTATTAAATAT
1 ATTATAATTAAATAT
27118353 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
27118367 A-TATAATTTAATA
1 ATTATAATTAAATA
27118380 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:27118591 original size:24 final size:25
Alignment explanation
Indices: 27118545--27118592 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
27118535 TATGAATTTG
27118545 TATAATTTAAAATAATAATTATTACA
1 TATAATTTAAAAT-ATAATTATTACA
27118571 TATAATTTAATAAT-TAA-TATTA
1 TATAATTTAA-AATATAATTATTA
27118593 AATTTCATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 5 0.24
25 3 0.14
26 10 0.48
27 3 0.14
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (25 bp):
TATAATTTAAAATATAATTATTACA
Found at i:27118596 original size:92 final size:92
Alignment explanation
Indices: 27118500--27118728 Score: 227
Period size: 92 Copynumber: 2.5 Consensus size: 92
27118490 TGATTTAATA
* * *
27118500 AAATTT-AAAATAATT-ATAACTAATAAATTATATTTTATGAATTTGTATAATTTAAAATAA-TA
1 AAATTTCAAAA-AATTCATAA-TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTA
*
27118562 ATTATTACATATAATTTAATAATTAATATT
64 A-TATTAAATATAATTTAATAATTAATATT
* * * * *
27118592 AAATTTCATAAAATTCTTGATAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAAT
1 AAATTTCAAAAAATTCATAATAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAAT
* *
27118657 ATTAAATATAATTTAAT-AGTGATA-T
66 ATTAAATATAATTTAATAATTAATATT
* ** *
27118682 ATAATTTCATAAAATTGTTAATAATAAAATGT-TCTTATATGAATTTA
1 A-AATTTCAAAAAATTCATAATAAT-AAAT-TATATTATATGAATTTA
27118729 CTAAAATCAA
Statistics
Matches: 118, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
90 2 0.02
91 26 0.22
92 81 0.69
93 9 0.08
ACGTcount: A:0.48, C:0.03, G:0.04, T:0.45
Consensus pattern (92 bp):
AAATTTCAAAAAATTCATAATAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAAT
ATTAAATATAATTTAATAATTAATATT
Found at i:27126994 original size:21 final size:20
Alignment explanation
Indices: 27126951--27126993 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
27126941 TCACGTCAAT
27126951 AAATAATTTAAAAGTTATAA
1 AAATAATTTAAAAGTTATAA
27126971 AAATAAATTGTAAAA-TT-TAA
1 AAAT-AATT-TAAAAGTTATAA
27126991 AAA
1 AAA
27126994 AAAACATGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 10 0.48
21 6 0.29
22 5 0.24
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.33
Consensus pattern (20 bp):
AAATAATTTAAAAGTTATAA
Found at i:27129377 original size:24 final size:24
Alignment explanation
Indices: 27129304--27129379 Score: 107
Period size: 24 Copynumber: 3.2 Consensus size: 24
27129294 AATCAAAGTC
** * *
27129304 AAATATATTATGTTAATAAATGCA
1 AAATATATTATACTCATAAATGCT
27129328 AAATATATTATACTCATAAATGCT
1 AAATATATTATACTCATAAATGCT
*
27129352 AAATATATTATACTCATAAATACT
1 AAATATATTATACTCATAAATGCT
27129376 AAAT
1 AAAT
27129380 CTTCTAGAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.50, C:0.09, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTCATAAATGCT
Found at i:27135105 original size:21 final size:22
Alignment explanation
Indices: 27135081--27135125 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
27135071 TGGAATTTAG
27135081 GGTAATTTTAAATA-TTTTAAA
1 GGTAATTTTAAATATTTTTAAA
* **
27135102 GGTATTTTTCCATATTTTTAAA
1 GGTAATTTTAAATATTTTTAAA
27135124 GG
1 GG
27135126 ATATTTAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.33, C:0.04, G:0.13, T:0.49
Consensus pattern (22 bp):
GGTAATTTTAAATATTTTTAAA
Found at i:27140215 original size:49 final size:49
Alignment explanation
Indices: 27140158--27140261 Score: 163
Period size: 49 Copynumber: 2.1 Consensus size: 49
27140148 TCATGTGTTA
* ** * *
27140158 TAATTTTATAAAGTGTTGAGGTTTTGATTCATGATGTTGAACTTAATTT
1 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
27140207 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
1 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
27140256 TAATTT
1 TAATTT
27140262 GTTTTTTTTC
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.31, C:0.07, G:0.12, T:0.50
Consensus pattern (49 bp):
TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
Found at i:27141679 original size:20 final size:20
Alignment explanation
Indices: 27141649--27141698 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
27141639 ACTATTATAT
*
27141649 ATTATTATTTTAGTACATTAA
1 ATTA-TATTTTAGCACATTAA
27141670 ATTATATTTTAGCACATTAA
1 ATTATATTTTAGCACATTAA
27141690 ATTATATTT
1 ATTATATTT
27141699 AATAATAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
20 24 0.86
21 4 0.14
ACGTcount: A:0.38, C:0.06, G:0.04, T:0.52
Consensus pattern (20 bp):
ATTATATTTTAGCACATTAA
Found at i:27141826 original size:120 final size:120
Alignment explanation
Indices: 27141685--27142159 Score: 853
Period size: 120 Copynumber: 4.0 Consensus size: 120
27141675 ATTTTAGCAC
* *
27141685 ATTAAATTATATTTAATAATAATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTA
1 ATTAAATTATATTTAATAATAATTATTTTAGAATATATTTTATAGTATTATATATAATGATTTTA
*
27141750 GAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTT
66 GTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTT
* * * *
27141805 ATTAAATTATATTTAAAAATAATTATTTTAGAATATATTTTATGGTGTTATATATTATGATTTTA
1 ATTAAATTATATTTAATAATAATTATTTTAGAATATATTTTATAGTATTATATATAATGATTTTA
27141870 GTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTT
66 GTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTT
27141925 ATTAAATTATATTTAATAATAATTATTTTAGAATATATTTTTATAGTATTATATATAATGATTTT
1 ATTAAATTATATTTAATAATAATTATTTTAGAATATA-TTTTATAGTATTATATATAATGATTTT
27141990 AGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTT
65 AGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTT
*
27142046 ATTAAATTATATTTAATAATTATTATTTTA-AATTATATTTTATAGTATTATATATAATGATTTT
1 ATTAAATTATATTTAATAATAATTATTTTAGAA-TATATTTTATAGTATTATATATAATGATTTT
27142110 AGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATAT
65 AGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATAT
27142160 TTAATAATAA
Statistics
Matches: 343, Mismatches: 10, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
120 230 0.67
121 113 0.33
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.51
Consensus pattern (120 bp):
ATTAAATTATATTTAATAATAATTATTTTAGAATATATTTTATAGTATTATATATAATGATTTTA
GTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTT
Found at i:27142156 original size:102 final size:102
Alignment explanation
Indices: 27142042--27142259 Score: 391
Period size: 102 Copynumber: 2.1 Consensus size: 102
27142032 AATTATATAT
* * *
27142042 TTTTATTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGTATTATATATAATGAT
1 TTTTATTAAATTATATTTAATAATAATTATTTTAAATTAAATTTTATACTATTATATATAATGAT
27142107 TTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
66 TTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
* *
27142144 TTTTATTAAATTATATTTAATAATAATTATTTTAGATTAAATTTTATACTATTATATATTATGAT
1 TTTTATTAAATTATATTTAATAATAATTATTTTAAATTAAATTTTATACTATTATATATAATGAT
27142209 TTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
66 TTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
27142246 TTTTATTAAATTAT
1 TTTTATTAAATTAT
27142260 TTATTTTTTA
Statistics
Matches: 111, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
102 111 1.00
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.51
Consensus pattern (102 bp):
TTTTATTAAATTATATTTAATAATAATTATTTTAAATTAAATTTTATACTATTATATATAATGAT
TTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
Found at i:27142278 original size:26 final size:26
Alignment explanation
Indices: 27142244--27142327 Score: 71
Period size: 26 Copynumber: 3.2 Consensus size: 26
27142234 TAATATTAAG
*
27142244 AATTTTATTAAATTATTTATTTTTTA
1 AATTATATTAAATTATTTATTTTTTA
* * * *
27142270 AATTATATTTAA-TAATAATTATGTTA
1 AATTATATTAAATTATTTATT-TTTTA
* *
27142296 AAATATGATTAAATTATTTATTATTTA
1 AATTAT-ATTAAATTATTTATTTTTTA
*
27142323 TATTA
1 AATTA
27142328 ATAATCTTAT
Statistics
Matches: 42, Mismatches: 13, Indels: 5
0.70 0.22 0.08
Matches are distributed among these distances:
25 6 0.14
26 19 0.45
27 11 0.26
28 6 0.14
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (26 bp):
AATTATATTAAATTATTTATTTTTTA
Found at i:27145865 original size:14 final size:14
Alignment explanation
Indices: 27145846--27145875 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
27145836 ATCTATTTAC
*
27145846 TATAATATTTTGAA
1 TATAATATTTTAAA
27145860 TATAATATTTTAAA
1 TATAATATTTTAAA
27145874 TA
1 TA
27145876 AAAAAATTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (14 bp):
TATAATATTTTAAA
Found at i:27153253 original size:20 final size:19
Alignment explanation
Indices: 27153224--27153261 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
27153214 CATGTGGTTA
27153224 ACCTACACGCCCATGTACG
1 ACCTACACGCCCATGTACG
*
27153243 ACCTCACACGCCCGTGTAC
1 ACCT-ACACGCCCATGTAC
27153262 ATGGACCGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.24, C:0.45, G:0.16, T:0.16
Consensus pattern (19 bp):
ACCTACACGCCCATGTACG
Found at i:27154353 original size:40 final size:40
Alignment explanation
Indices: 27154300--27154399 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
27154290 AGAGCATTCT
* * * *
27154300 TTTCAATATATTCAGTAGGTATGGCTTGAGAGCACATACG
1 TTTCAGTAGATTCAGTAGGTATGGCTCGAAAGCACATACG
* *
27154340 TTTCAGTAGATTCAATAGGTAAGGCTCGAAAGCACATACG
1 TTTCAGTAGATTCAGTAGGTATGGCTCGAAAGCACATACG
*
27154380 -TT-AGTAGATTTAGTAGGTAT
1 TTTCAGTAGATTCAGTAGGTAT
27154400 CCCTCGTCTG
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
38 15 0.29
39 2 0.04
40 34 0.67
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (40 bp):
TTTCAGTAGATTCAGTAGGTATGGCTCGAAAGCACATACG
Found at i:27156739 original size:50 final size:50
Alignment explanation
Indices: 27156673--27156771 Score: 189
Period size: 50 Copynumber: 2.0 Consensus size: 50
27156663 AACATATCGT
27156673 TTGCAAGATTGCTTGTTTAAATAATTAATTTTAGATCATGTAATTAAGAG
1 TTGCAAGATTGCTTGTTTAAATAATTAATTTTAGATCATGTAATTAAGAG
*
27156723 TTGCAAGATTGTTTGTTTAAATAATTAATTTTAGATCATGTAATTAAGA
1 TTGCAAGATTGCTTGTTTAAATAATTAATTTTAGATCATGTAATTAAGA
27156772 CAATTCATCT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.36, C:0.05, G:0.15, T:0.43
Consensus pattern (50 bp):
TTGCAAGATTGCTTGTTTAAATAATTAATTTTAGATCATGTAATTAAGAG
Found at i:27161211 original size:103 final size:103
Alignment explanation
Indices: 27161030--27161281 Score: 364
Period size: 103 Copynumber: 2.5 Consensus size: 103
27161020 GGGTTGTTGT
* * * *
27161030 GTGCTGATTCCCCTATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAAG
1 GTGCTGATTCCCCAATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATCTGAAATGTGAAAG
*
27161095 GGGGTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAA
66 GGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAA
* **
27161133 GTGCTGATTCCCCGACCCATTTGGTGGTTGCTAAGTGCTGATTCCACCGCATCTGAAATGTG-AA
1 GTGCTGATTCCCCAATTCA-TTGGTGGTTGCTAAGTGCTGATTCCACCGCATCTGAAATGTGAAA
* **
27161197 GGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGTTGT
65 GGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAA
* *
27161236 GTGCTGATTCCCCAATTCATTGGTGG-TGCTAAGTGCGGAATCCACC
1 GTGCTGATTCCCCAATTCATTGGTGGTTGCTAAGTGCTGATTCCACC
27161282 AACAACGGTT
Statistics
Matches: 133, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
101 18 0.14
102 7 0.05
103 69 0.52
104 39 0.29
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.31
Consensus pattern (103 bp):
GTGCTGATTCCCCAATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATCTGAAATGTGAAAG
GGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAA
Found at i:27167385 original size:52 final size:53
Alignment explanation
Indices: 27167279--27167401 Score: 151
Period size: 52 Copynumber: 2.3 Consensus size: 53
27167269 TTTGGATTTG
* * *
27167279 AACTGATTGTTATGTTGAAATATTGTTTCTTTTGAATCGATTGTATATATGTTTA
1 AACTGATTGTTATGTTGAAATA-T-CTACTTTTAAATCGATTGTATATATGTTTA
* * *
27167334 AACTGATTGTCATGTTGAAATA-CTACTTTTAAATTGATTGTTTATATGTTTA
1 AACTGATTGTTATGTTGAAATATCTACTTTTAAATCGATTGTATATATGTTTA
27167386 AA-TCGATTGTTATGTT
1 AACT-GATTGTTATGTT
27167402 AGAATTCTAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
51 1 0.02
52 38 0.63
55 21 0.35
ACGTcount: A:0.28, C:0.07, G:0.15, T:0.50
Consensus pattern (53 bp):
AACTGATTGTTATGTTGAAATATCTACTTTTAAATCGATTGTATATATGTTTA
Found at i:27169241 original size:6 final size:6
Alignment explanation
Indices: 27169232--27169260 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
27169222 GAATTTGAAA
27169232 TAAAAT TAAAAT TAAAAT TAAAAT TAAAA
1 TAAAAT TAAAAT TAAAAT TAAAAT TAAAA
27169261 GTGATATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
TAAAAT
Found at i:27182255 original size:40 final size:40
Alignment explanation
Indices: 27182207--27182356 Score: 187
Period size: 40 Copynumber: 3.8 Consensus size: 40
27182197 GAGCTTTAGC
*
27182207 AGCATTAGCGGCGCTTTTTGAAAAACACCGCTTTAGGTCG
1 AGCATTAGCGGCGCTTTTTGAAAAACGCCGCTTTAGGTCG
* *
27182247 ACCATTAGCGGCGCTTTTTGAAAAACGTCG-TTATAGGTCG
1 AGCATTAGCGGCGCTTTTTGAAAAACGCCGCTT-TAGGTCG
* * * *
27182287 AGCATTAGCAGCGCTTCTTT-AAAAACGCCACTATAGATCG
1 AGCATTAGCGGCGCTT-TTTGAAAAACGCCGCTTTAGGTCG
* *
27182327 AGCATTAGCGGCGCTTTCTAAAAAACGCCG
1 AGCATTAGCGGCGCTTTTTGAAAAACGCCG
27182357 TAAAAAATTT
Statistics
Matches: 94, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 4 0.04
40 86 0.91
41 4 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (40 bp):
AGCATTAGCGGCGCTTTTTGAAAAACGCCGCTTTAGGTCG
Found at i:27182846 original size:22 final size:22
Alignment explanation
Indices: 27182777--27182856 Score: 58
Period size: 22 Copynumber: 3.7 Consensus size: 22
27182767 TATCATTATT
* * * *
27182777 GTTTAGGGTTTAAGGCTTAAGA
1 GTTTAAGGTTTATGGATTATGA
27182799 -TTTAAGGTTTA-GGAGTTACT-A
1 GTTTAAGGTTTATGGA-TTA-TGA
*
27182820 TTTTAAGGTTTATGGATTATGA
1 GTTTAAGGTTTATGGATTATGA
* *
27182842 GTTTAGGGATTATGG
1 GTTTAAGGTTTATGG
27182857 TTTAGGGGTT
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
20 2 0.04
21 15 0.32
22 27 0.57
23 3 0.06
ACGTcount: A:0.26, C:0.03, G:0.29, T:0.42
Consensus pattern (22 bp):
GTTTAAGGTTTATGGATTATGA
Found at i:27182861 original size:14 final size:14
Alignment explanation
Indices: 27182826--27182863 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
27182816 ACTATTTTAA
*
27182826 GGTTTATGGATTAT
1 GGTTTAGGGATTAT
27182840 GAGTTTAGGGATTAT
1 G-GTTTAGGGATTAT
27182855 GGTTTAGGG
1 GGTTTAGGG
27182864 GTTTAGGAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.21, C:0.00, G:0.37, T:0.42
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:27182988 original size:7 final size:7
Alignment explanation
Indices: 27182918--27183010 Score: 80
Period size: 7 Copynumber: 13.0 Consensus size: 7
27182908 GATTATATAT
*
27182918 GGTTTAT
1 GGTTTAG
27182925 GGTTTATG
1 GGTTTA-G
27182933 GGTTTAAG
1 GGTTT-AG
27182941 GG-TTAG
1 GGTTTAG
27182947 GGTTTAG
1 GGTTTAG
27182954 GGTTTAG
1 GGTTTAG
* *
27182961 TGTTTAT
1 GGTTTAG
* *
27182968 GATTTAT
1 GGTTTAG
*
27182975 GATTTAG
1 GGTTTAG
27182982 GGTTTAG
1 GGTTTAG
**
27182989 GGGATAGG
1 GGTTTA-G
27182997 GGTTTAG
1 GGTTTAG
27183004 GGTTTAG
1 GGTTTAG
27183011 ATTAATTAGT
Statistics
Matches: 71, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
6 4 0.06
7 53 0.75
8 13 0.18
9 1 0.01
ACGTcount: A:0.18, C:0.00, G:0.38, T:0.44
Consensus pattern (7 bp):
GGTTTAG
Found at i:27183001 original size:50 final size:50
Alignment explanation
Indices: 27182915--27183010 Score: 140
Period size: 50 Copynumber: 1.9 Consensus size: 50
27182905 AAGGATTATA
* * *
27182915 TATGGTTTATGGTTTATGGGTTTAAGGGTTAGGGTTTAGGGTTTAGTGTT
1 TATGATTTATGATTTATGGGTTTAAGGGATAGGGTTTAGGGTTTAGTGTT
*
27182965 TATGATTTATGATTTA-GGGTTTAGGGGATAGGGGTTTAGGGTTTAG
1 TATGATTTATGATTTATGGGTTTAAGGGATA-GGGTTTAGGGTTTAG
27183011 ATTAATTAGT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
49 12 0.29
50 29 0.71
ACGTcount: A:0.19, C:0.00, G:0.36, T:0.45
Consensus pattern (50 bp):
TATGATTTATGATTTATGGGTTTAAGGGATAGGGTTTAGGGTTTAGTGTT
Found at i:27186605 original size:115 final size:113
Alignment explanation
Indices: 27186294--27186719 Score: 415
Period size: 114 Copynumber: 3.7 Consensus size: 113
27186284 GGCCATTACA
* * * * *
27186294 GCCGCAAAAATTATTTTGTTTTAAT-AAAA-ATGACGCCATTTTATTGGATTTCTTAGTGGCATT
1 GCCGCAAAAGTTATTTGGTTTTAATCAAAACA-GACGCCATTTTATTTGATTTTTTAGTGGC-GT
* * * *
27186357 TTTTGTGAAACGCCACAATATGTCGAGCTGTAGCGGCGCTATCCT-AAAAAC
64 TTTCGTAAAACGCCACAATAGGTCGAGCTTTAGCGGCGCTA--CTAAAAAAC
* * * *
27186408 GCCGTC-AAAGTTATTCTGGTTTT-ATCAAAATA-ACACCTTTTTATTTGATTTTTTAGTGGTGT
1 GCCG-CAAAAGTTATT-TGGTTTTAATCAAAACAGACGCCATTTTATTTGATTTTTTAGTGGCG-
* *
27186470 TTTTGGTAAAACGCCACAATAGGTCGAGCTTTAGCGGCGCTAGGTAAAAAAC
63 TTTTCGTAAAACGCCACAATAGGTCGAGCTTTAGCGGCGCTA-CTAAAAAAC
27186522 GCCGCAAAAGGTTAATTT-GTTTTAATCAAAACAGA-GCCATTTTATTTGATTTTTTAGTGGCGT
1 GCCGCAAAA-GTT-ATTTGGTTTTAATCAAAACAGACGCCATTTTATTTGATTTTTTAGTGGCGT
* * * *
27186585 TTTCGTCAAAACACCGCAATAGGTC-AGGCTTTAGCGGCGCTACCATAAAAC
64 TTTCGT-AAAACGCCACAATAGGTCGA-GCTTTAGCGGCGCTACTAAAAAAC
* * * **
27186636 GCCGCAAAATGTTATTTGGTTTTAATCAAAACAG-CGCTATTTT-TGTAGGTTTTTTAGTGGTAT
1 GCCGCAAAA-GTTATTTGGTTTTAATCAAAACAGACGCCATTTTAT-TTGATTTTTTAGTGGCGT
*
27186699 TTTCGGTTAAACGCCACAATA
64 TTTC-GTAAAACGCCACAATA
27186720 TGTAGGGATT
Statistics
Matches: 262, Mismatches: 33, Indels: 34
0.80 0.10 0.10
Matches are distributed among these distances:
113 7 0.03
114 170 0.65
115 80 0.31
116 5 0.02
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (113 bp):
GCCGCAAAAGTTATTTGGTTTTAATCAAAACAGACGCCATTTTATTTGATTTTTTAGTGGCGTTT
TCGTAAAACGCCACAATAGGTCGAGCTTTAGCGGCGCTACTAAAAAAC
Found at i:27186694 original size:229 final size:229
Alignment explanation
Indices: 27186294--27186772 Score: 516
Period size: 229 Copynumber: 2.1 Consensus size: 229
27186284 GGCCATTACA
* * *
27186294 GCCGCAAAA-ATTATTTTGTTTTAATAAAAATGACGCCATTTTATTGGATTTCTTAGTGGCATTT
1 GCCGCAAAAGGTTAATTTGTTTTAATAAAAATGACGCCATTTTATTGGATTTCTTAGTGGCAGTT
* * * *
27186358 TTTGTGAAACGCCACAATATGTCGAGCTGTAGCGGCGCTATCCTAAAAACGCCGTCAAAGTTATT
66 TTCGTAAAACACCACAATAGGTCGAGCTGTAGCGGCGCTATCCTAAAAACGCCGTCAAAGTTATT
* * * *
27186423 CTGGTTTTATCAAAATAACACCTTTTTATTTGATTTTTTAGTGGTGTTTTTGGTAAAACGCCACA
131 CTGGTTTTATCAAAACAACACCTTTTTATTAGATTTTTTAGTGGTATTTTCGGTAAAACGCCACA
* * *
27186488 ATAGGTCGAGCTTTAGCGGCGCTAG-GTAAAAAAC
196 ATAGGTAGAGATTTAGCGACGCTAGTG-AAAAAAC
* *
27186522 GCCGCAAAAGGTTAATTTGTTTTAATCAAAACA-GA-GCCATTTTATTTGATTTTTTAGTGGC-G
1 GCCGCAAAAGGTTAATTTGTTTTAAT-AAAA-ATGACGCCATTTTATTGGATTTCTTAGTGGCAG
* *
27186584 TTTTCGTCAAAACACCGCAATAGGTC-AGGCTTTAGCGGCGCTA-CC-ATAAAACGCCG-CAAAA
64 TTTTCGT-AAAACACCACAATAGGTCGA-GCTGTAGCGGCGCTATCCTA-AAAACGCCGTC-AAA
* * * *
27186645 TGTTATT-TGGTTTTAATCAAAACAGC-GCTATTTT-TGTAGGTTTTTTAGTGGTATTTTCGGTT
125 -GTTATTCTGGTTTT-ATCAAAACAACACCT-TTTTAT-TAGATTTTTTAGTGGTATTTTCGGTA
* * * *
27186707 AAACGCCACAATATGTAGGGATTTAGCGACGCTAGTGGATAAAC
186 AAACGCCACAATAGGTAGAGATTTAGCGACGCTAGTGAAAAAAC
* *
27186751 GCCGC-AAAGGTTGATTTCTTTT
1 GCCGCAAAAGGTTAATTTGTTTT
27186773 TGGCAAAACG
Statistics
Matches: 211, Mismatches: 28, Indels: 24
0.80 0.11 0.09
Matches are distributed among these distances:
227 2 0.01
228 55 0.26
229 146 0.69
230 7 0.03
231 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (229 bp):
GCCGCAAAAGGTTAATTTGTTTTAATAAAAATGACGCCATTTTATTGGATTTCTTAGTGGCAGTT
TTCGTAAAACACCACAATAGGTCGAGCTGTAGCGGCGCTATCCTAAAAACGCCGTCAAAGTTATT
CTGGTTTTATCAAAACAACACCTTTTTATTAGATTTTTTAGTGGTATTTTCGGTAAAACGCCACA
ATAGGTAGAGATTTAGCGACGCTAGTGAAAAAAC
Found at i:27186732 original size:114 final size:114
Alignment explanation
Indices: 27186294--27186767 Score: 396
Period size: 114 Copynumber: 4.1 Consensus size: 114
27186284 GGCCATTACA
* * * * *
27186294 GCCGCAAAAATTATTTTGTTTTAAT-AAAA-ATGACGCCATTTTATTGGATTTCTTAGTGGCATT
1 GCCGCAAAAGTTATTTGGTTTTAATCAAAACA-G-CGCTATTTTATTTGATTTTTTAGTGGCATT
** * * * * *
27186357 TTTTGTGAAACGCCACAATATGTCGAGCTGTAGCGGCGCTATCC-TAAAAAC
64 TTCGGTAAAACGCCACAATAGGTAGAGCTTTAGCGGCGCTAGCCAT-AAAAC
* * * **
27186408 GCCGTC-AAAGTTATTCTGGTTTT-ATCAAAATAACACCT-TTTTATTTGATTTTTTAGTGGTGT
1 GCCG-CAAAAGTTATT-TGGTTTTAATCAAAACAGC-GCTATTTTATTTGATTTTTTAGTGGCAT
* * ** *
27186470 TTTTGGTAAAACGCCACAATAGGTCGAGCTTTAGCGGCGCTAGGTAAAAAAC
63 TTTCGGTAAAACGCCACAATAGGTAGAGCTTTAGCGGCGCTAGCCATAAAAC
* * *
27186522 GCCGCAAAAGGTTAATTT-GTTTTAATCAAAACAGAGCCATTTTATTTGATTTTTTAGTGGCGTT
1 GCCGCAAAA-GTT-ATTTGGTTTTAATCAAAACAGCGCTATTTTATTTGATTTTTTAGTGGCATT
* *
27186586 TTC-GTCAAAACACCGCAATAGGTCAG-GCTTTAGCGGCGCTA-CCATAAAAC
64 TTCGGT-AAAACGCCACAATAGGT-AGAGCTTTAGCGGCGCTAGCCATAAAAC
* * *
27186636 GCCGCAAAATGTTATTTGGTTTTAATCAAAACAGCGCTATTTT-TGTAGGTTTTTTAGTGGTATT
1 GCCGCAAAA-GTTATTTGGTTTTAATCAAAACAGCGCTATTTTAT-TTGATTTTTTAGTGGCATT
* * * * * **
27186700 TTCGGTTAAACGCCACAATATGTAGGGATTTAGCGACGCTAGTGGAT-AAAC
64 TTCGGTAAAACGCCACAATAGGTAGAGCTTTAGCGGCGCTAG-CCATAAAAC
*
27186751 GCCGCAAAGGTTGATTT
1 GCCGCAAAAGTT-ATTT
27186768 CTTTTTGGCA
Statistics
Matches: 294, Mismatches: 46, Indels: 39
0.78 0.12 0.10
Matches are distributed among these distances:
113 8 0.03
114 181 0.62
115 98 0.33
116 7 0.02
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (114 bp):
GCCGCAAAAGTTATTTGGTTTTAATCAAAACAGCGCTATTTTATTTGATTTTTTAGTGGCATTTT
CGGTAAAACGCCACAATAGGTAGAGCTTTAGCGGCGCTAGCCATAAAAC
Found at i:27186974 original size:28 final size:28
Alignment explanation
Indices: 27186916--27186975 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
27186906 AAATTTGCAG
* ***
27186916 CCCAACCTTTTTTCCTTTTCTTTTTTTC
1 CCCAACCTTTTCTCCTTTTCTTTTCCCC
*
27186944 CCCAACCTTTTCTCCTTATTCTTTCCCCC
1 CCCAACCTTTTCTCCTT-TTCTTTTCCCC
27186973 CCC
1 CCC
27186976 CCGAAATCCC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 16 0.62
29 10 0.38
ACGTcount: A:0.08, C:0.43, G:0.00, T:0.48
Consensus pattern (28 bp):
CCCAACCTTTTCTCCTTTTCTTTTCCCC
Found at i:27209199 original size:17 final size:17
Alignment explanation
Indices: 27209109--27209200 Score: 50
Period size: 17 Copynumber: 5.4 Consensus size: 17
27209099 ATTTTAATAG
*
27209109 ATTTAATATTAAATTGA
1 ATTTAATATTAAATTTA
*
27209126 ATTTAATATT-TATCTTA
1 ATTTAATATTAAAT-TTA
* **
27209143 A--TAGTATTTTA-TTA
1 ATTTAATATTAAATTTA
*
27209157 ATTTAATAATAAAGTGATT-
1 ATTTAATATTAAA-T--TTA
27209176 ATCTTAATATTAAATTTA
1 AT-TTAATATTAAATTTA
27209194 ATTTAAT
1 ATTTAAT
27209201 GTTTATCTTA
Statistics
Matches: 57, Mismatches: 8, Indels: 20
0.67 0.09 0.24
Matches are distributed among these distances:
14 4 0.07
15 6 0.11
16 10 0.18
17 20 0.35
18 2 0.04
19 3 0.05
20 12 0.21
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.51
Consensus pattern (17 bp):
ATTTAATATTAAATTTA
Found at i:27216426 original size:13 final size:13
Alignment explanation
Indices: 27216408--27216442 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
27216398 TGGCCATGTG
27216408 AGCCACACAGCCT
1 AGCCACACAGCCT
*
27216421 AGCCACATAGCCT
1 AGCCACACAGCCT
27216434 AGCCACACA
1 AGCCACACA
27216443 AGAGTGTGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.34, C:0.43, G:0.14, T:0.09
Consensus pattern (13 bp):
AGCCACACAGCCT
Found at i:27223705 original size:23 final size:24
Alignment explanation
Indices: 27223681--27223729 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
27223671 ATTTTACATT
*
27223681 AATAAAATTAGCATAACTTTTTTAAA
1 AATAAAATTAGCACAACTTTTTT--A
*
27223707 AATAAAATTATCACAACTTTTTT
1 AATAAAATTAGCACAACTTTTTT
27223730 TTACATCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.47, C:0.10, G:0.02, T:0.41
Consensus pattern (24 bp):
AATAAAATTAGCACAACTTTTTTA
Found at i:27235365 original size:13 final size:13
Alignment explanation
Indices: 27235347--27235377 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
27235337 ATTTGAATAT
*
27235347 ATTTATTATTTAA
1 ATTTATTATTGAA
27235360 ATTTATTATTGAA
1 ATTTATTATTGAA
27235373 ATTTA
1 ATTTA
27235378 GAATTCAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (13 bp):
ATTTATTATTGAA
Found at i:27238797 original size:50 final size:49
Alignment explanation
Indices: 27238707--27238851 Score: 132
Period size: 50 Copynumber: 2.9 Consensus size: 49
27238697 CGGACACACC
* * *
27238707 ACAGCTCTCTTGGGCTT-CTCGATACTTGGCTCT-CATGAGCTTCCCAATTA
1 ACAGCTCTCTTGAGCTTCCT-GATATTTGGCT-TGCAAGAGCTTCCC-ATTA
* *
27238757 ACAGCTCTCTTGAGCTTCCTGATATTTGGCTTGCAAGAGCTTCTCGTTA
1 ACAGCTCTCTTGAGCTTCCTGATATTTGGCTTGCAAGAGCTTCCCATTA
* * * * * * *
27238806 CCTAGCTCACATGAGCTTCCTGTTATATGGCTCGGAAGAGCTTCCC
1 AC-AGCTCTCTTGAGCTTCCTGATATTTGGCTTGCAAGAGCTTCCC
27238852 GTTTACATGC
Statistics
Matches: 79, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
49 5 0.06
50 72 0.91
51 2 0.03
ACGTcount: A:0.19, C:0.28, G:0.20, T:0.33
Consensus pattern (49 bp):
ACAGCTCTCTTGAGCTTCCTGATATTTGGCTTGCAAGAGCTTCCCATTA
Found at i:27238870 original size:50 final size:50
Alignment explanation
Indices: 27238767--27238863 Score: 124
Period size: 50 Copynumber: 1.9 Consensus size: 50
27238757 ACAGCTCTCT
* * * *
27238767 TGAGCTTCCTGATATTTGGCTTGCAAGAGCTTCTCGTTACCTAGCTCACA
1 TGAGCTTCCTGATATATGGCTCGCAAGAGCTTCCCGTTACATAGCTCACA
* *
27238817 TGAGCTTCCTGTTATATGGCTCGGAAGAGCTTCCCGTTTACAT-GCTC
1 TGAGCTTCCTGATATATGGCTCGCAAGAGCTTCCCG-TTACATAGCTC
27238864 GTATGAGAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
50 35 0.88
51 5 0.12
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.34
Consensus pattern (50 bp):
TGAGCTTCCTGATATATGGCTCGCAAGAGCTTCCCGTTACATAGCTCACA
Found at i:27243894 original size:50 final size:48
Alignment explanation
Indices: 27243835--27244021 Score: 250
Period size: 50 Copynumber: 3.8 Consensus size: 48
27243825 GGCAGTGAGT
27243835 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACTGAGGA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GAC-GAGGA
*
27243885 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGACAGAGGA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GAC-GAGGA
* * * * * *
27243935 GAGTCAGTGTAAGACCATGTCTGGGACATGGCAGCAGCTCGA-GATGA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGACGAGGA
* *
27243982 GTGCCAGCGTAGGACCATGTCTGGGACATGGCATCGGCAC
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
27244022 CGATATGTGA
Statistics
Matches: 120, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
47 37 0.31
49 2 0.02
50 81 0.68
ACGTcount: A:0.25, C:0.22, G:0.35, T:0.18
Consensus pattern (48 bp):
GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGACGAGGA
Found at i:27244016 original size:97 final size:99
Alignment explanation
Indices: 27243839--27244021 Score: 280
Period size: 97 Copynumber: 1.9 Consensus size: 99
27243829 GTGAGTGTGC
* * * *
27243839 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACTGAGGAGTGCTAGTGTAAGACCATG
1 CAGTGTAAGACCATGTCTGGGACATGGCAGCAGCACAGAC-GAGGAGTGCCAGCGTAAGACCATG
27243904 TCTGGGACATGGCATCGGCACGGACAGAGGAGAGT
65 TCTGGGACATGGCATCGGCACGGACAGAGGAGAGT
* * *
27243939 CAGTGTAAGACCATGTCTGGGACATGGCAGCAGCTC-GA-GATGAGTGCCAGCGTAGGACCATGT
1 CAGTGTAAGACCATGTCTGGGACATGGCAGCAGCACAGACGAGGAGTGCCAGCGTAAGACCATGT
27244002 CTGGGACATGGCATCGGCAC
66 CTGGGACATGGCATCGGCAC
27244022 CGATATGTGA
Statistics
Matches: 76, Mismatches: 7, Indels: 3
0.88 0.08 0.03
Matches are distributed among these distances:
97 41 0.54
99 2 0.03
100 33 0.43
ACGTcount: A:0.26, C:0.22, G:0.34, T:0.18
Consensus pattern (99 bp):
CAGTGTAAGACCATGTCTGGGACATGGCAGCAGCACAGACGAGGAGTGCCAGCGTAAGACCATGT
CTGGGACATGGCATCGGCACGGACAGAGGAGAGT
Found at i:27244493 original size:45 final size:45
Alignment explanation
Indices: 27244444--27244559 Score: 128
Period size: 45 Copynumber: 2.6 Consensus size: 45
27244434 ATATCGTTGG
* * *
27244444 AAATATAGGTGGA-TGTTATGTGCTGATTCCACCTGATATTAATGA
1 AAATAAAGGT-GATTGTTATGTGCTGATTCCACCGGATATCAATGA
* *
27244489 AAATAAAGGTGATTGTTATGTGCTGATTTCACCGGATATCAATGG
1 AAATAAAGGTGATTGTTATGTGCTGATTCCACCGGATATCAATGA
** *
27244534 TTATATAA-GTGATTGCTATGTGCTGA
1 AAATA-AAGGTGATTGTTATGTGCTGA
27244560 ATTCACCCAG
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
44 2 0.03
45 57 0.93
46 2 0.03
ACGTcount: A:0.30, C:0.10, G:0.23, T:0.36
Consensus pattern (45 bp):
AAATAAAGGTGATTGTTATGTGCTGATTCCACCGGATATCAATGA
Found at i:27244635 original size:45 final size:45
Alignment explanation
Indices: 27244546--27244636 Score: 116
Period size: 45 Copynumber: 2.0 Consensus size: 45
27244536 ATATAAGTGA
*
27244546 TTGCTATGTGCTGAATTCACCCAGTACCATTGAGTACAAAGGTGG
1 TTGCTATGTGCTGAATTCACCCAGTACCATTGACTACAAAGGTGG
*
27244591 TTGCTATGTGCT-AATTTCACCGAGTACTC-TTGACTA-AAAGGGTGG
1 TTGCTATGTGCTGAA-TTCACCCAGTAC-CATTGACTACAAA-GGTGG
27244636 T
1 T
27244637 GTTGTGTGCT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
44 5 0.12
45 35 0.85
46 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (45 bp):
TTGCTATGTGCTGAATTCACCCAGTACCATTGACTACAAAGGTGG
Found at i:27246071 original size:16 final size:16
Alignment explanation
Indices: 27246050--27246080 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
27246040 GAAAAAATAA
*
27246050 AAAAGTTTTAGGGAAT
1 AAAAGTTTGAGGGAAT
27246066 AAAAGTTTGAGGGAA
1 AAAAGTTTGAGGGAA
27246081 AGTAAATAGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.29, T:0.26
Consensus pattern (16 bp):
AAAAGTTTGAGGGAAT
Found at i:27246205 original size:30 final size:31
Alignment explanation
Indices: 27246166--27246225 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
27246156 GGAGGTGGGA
*
27246166 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
* *
27246197 TGGG-AGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAA
27246226 TAAAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
Found at i:27246335 original size:5 final size:5
Alignment explanation
Indices: 27246325--27246349 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
27246315 TTAAGGGGTT
27246325 GGGAG GGGAG GGGAG GGGAG GGGAG
1 GGGAG GGGAG GGGAG GGGAG GGGAG
27246350 TAAAAGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.80, T:0.00
Consensus pattern (5 bp):
GGGAG
Found at i:27246463 original size:9 final size:9
Alignment explanation
Indices: 27246449--27246485 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
27246439 TATAGTTTGA
27246449 TATTCGAAT
1 TATTCGAAT
27246458 TATTCGAAT
1 TATTCGAAT
*
27246467 TATTCGAGT
1 TATTCGAAT
27246476 TATTCGAAT
1 TATTCGAAT
27246485 T
1 T
27246486 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:27248710 original size:21 final size:22
Alignment explanation
Indices: 27248651--27248714 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 22
27248641 CAAAAGCAGT
* * *
27248651 ATACAACACATAAAGTGCCTGG
1 ATACGACACATATAGTGCCTGA
** *
27248673 A-ACGACACACGTGGTGCCT-A
1 ATACGACACATATAGTGCCTGA
27248693 ATACGACACATATAGTGCCTGA
1 ATACGACACATATAGTGCCTGA
27248715 TCTGCAAGGC
Statistics
Matches: 31, Mismatches: 9, Indels: 4
0.70 0.20 0.09
Matches are distributed among these distances:
20 1 0.03
21 28 0.90
22 2 0.06
ACGTcount: A:0.36, C:0.25, G:0.20, T:0.19
Consensus pattern (22 bp):
ATACGACACATATAGTGCCTGA
Found at i:27249232 original size:23 final size:23
Alignment explanation
Indices: 27249206--27249250 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
27249196 ATTTCTTGCT
* * *
27249206 TTTATTCTTTTTTTTCTTTATTC
1 TTTAATCTTTATTTACTTTATTC
*
27249229 TTTAATGTTTATTTACTTTATT
1 TTTAATCTTTATTTACTTTATT
27249251 ATTTTAATGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.16, C:0.09, G:0.02, T:0.73
Consensus pattern (23 bp):
TTTAATCTTTATTTACTTTATTC
Found at i:27255288 original size:21 final size:21
Alignment explanation
Indices: 27255264--27255304 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
27255254 CATGTTTTGG
27255264 TTTCTGTATTAAGTTCATGTT
1 TTTCTGTATTAAGTTCATGTT
*
27255285 TTTCTGTATTAAGTTGATGT
1 TTTCTGTATTAAGTTCATGT
27255305 ATGGCAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.07, G:0.17, T:0.56
Consensus pattern (21 bp):
TTTCTGTATTAAGTTCATGTT
Found at i:27256525 original size:49 final size:49
Alignment explanation
Indices: 27256468--27256571 Score: 183
Period size: 49 Copynumber: 2.1 Consensus size: 49
27256458 TCATGTGTTA
*
27256468 TAATTTTATAAAGTGTTGAGCTTTTGATTCATGATATTGA-ACTTAATTT
1 TAATTTTATAAAGTGTTGACCTTTTGATTCATGATATT-ACACTTAATTT
27256517 TAATTTTATAAAGTGTTGACCTTTTGATTCATGATATTACACTTAATTT
1 TAATTTTATAAAGTGTTGACCTTTTGATTCATGATATTACACTTAATTT
27256566 TAATTT
1 TAATTT
27256572 GTTTTTTTCT
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
48 1 0.02
49 52 0.98
ACGTcount: A:0.31, C:0.08, G:0.12, T:0.50
Consensus pattern (49 bp):
TAATTTTATAAAGTGTTGACCTTTTGATTCATGATATTACACTTAATTT
Found at i:27258008 original size:24 final size:23
Alignment explanation
Indices: 27257959--27258009 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
27257949 TAAAGTAGAT
* *
27257959 TATATATGATTTTTATAGTATTA
1 TATATATGATTTTAATAGAATTA
27257982 TATATTATGATTTTAATA-AATTCA
1 TATA-TATGATTTTAATAGAATT-A
27258006 TATA
1 TATA
27258010 AGAATAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 7 0.29
24 17 0.71
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (23 bp):
TATATATGATTTTAATAGAATTA
Found at i:27258041 original size:17 final size:18
Alignment explanation
Indices: 27258016--27258061 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
27258006 TATAAGAATA
*
27258016 ATTATATTA-AGAATTTT
1 ATTAAATTATAGAATTTT
* *
27258033 ATTAAATTATATATTTTT
1 ATTAAATTATAGAATTTT
27258051 ATTAAATTATA
1 ATTAAATTATA
27258062 TTTAATAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 8 0.32
18 17 0.68
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
ATTAAATTATAGAATTTT
Found at i:27258058 original size:55 final size:54
Alignment explanation
Indices: 27257992--27258108 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 54
27257982 TATATTATGA
* * *
27257992 TTTTAATAAATTCATA-TAAGAATAATTATATTAAGAATTTTATTAAATTATATAT
1 TTTTATTAAATT-ATATTAAGAATAATTATATTAA-AATATGATTAAATTATATAT
* * *
27258047 TTTTATTAAATTATATTTAATAATAATTATGTTAAAATATGATTAAATTATTTAT
1 TTTTATTAAATTATA-TTAAGAATAATTATATTAAAATATGATTAAATTATATAT
27258102 TATTTAT
1 T-TTTAT
27258109 ATTAATAATC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
54 3 0.06
55 29 0.55
56 21 0.40
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.51
Consensus pattern (54 bp):
TTTTATTAAATTATATTAAGAATAATTATATTAAAATATGATTAAATTATATAT
Found at i:27258305 original size:45 final size:44
Alignment explanation
Indices: 27258224--27258312 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
27258214 ATTACAATAT
* *
27258224 CATTTCATTCAACCAAATACAAGAATACTATTACAGTTTTATTC
1 CATTCCATTCAACCAAATACAAGAATACTATTACAGTTCTATTC
27258268 CATTCCATTCAACC-AA-ACAATTGAATTACTATTACAGTTCTATTC
1 CATTCCATTCAACCAAATACAA--GAA-TACTATTACAGTTCTATTC
27258313 TATTACAGTT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
42 4 0.10
43 2 0.05
44 16 0.40
45 18 0.45
ACGTcount: A:0.37, C:0.22, G:0.04, T:0.36
Consensus pattern (44 bp):
CATTCCATTCAACCAAATACAAGAATACTATTACAGTTCTATTC
Found at i:27258317 original size:16 final size:16
Alignment explanation
Indices: 27258296--27258336 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
27258286 AATTGAATTA
27258296 CTATTACAGTTCTATT
1 CTATTACAGTTCTATT
*
27258312 CTATTACAGTTTTATT
1 CTATTACAGTTCTATT
*
27258328 CCATTACAG
1 CTATTACAG
27258337 CGAACCAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.07, T:0.46
Consensus pattern (16 bp):
CTATTACAGTTCTATT
Found at i:27258498 original size:6 final size:6
Alignment explanation
Indices: 27258489--27258520 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
27258479 ACCAAAAACT
*
27258489 AAAAGC AAAAGC AAAAGT AAAAGC AAAAGC AA
1 AAAAGC AAAAGC AAAAGC AAAAGC AAAAGC AA
27258521 TCATCTGTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.69, C:0.12, G:0.16, T:0.03
Consensus pattern (6 bp):
AAAAGC
Found at i:27258509 original size:18 final size:18
Alignment explanation
Indices: 27258483--27258520 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
27258473 GCAGAAACCA
27258483 AAAACTAAAAGCAAAAGC
1 AAAACTAAAAGCAAAAGC
*
27258501 AAAAGTAAAAGCAAAAGC
1 AAAACTAAAAGCAAAAGC
27258519 AA
1 AA
27258521 TCATCTGTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.68, C:0.13, G:0.13, T:0.05
Consensus pattern (18 bp):
AAAACTAAAAGCAAAAGC
Found at i:27262011 original size:31 final size:31
Alignment explanation
Indices: 27261976--27262052 Score: 77
Period size: 31 Copynumber: 2.5 Consensus size: 31
27261966 TGTAATTTTT
*
27261976 ATAGTTGGATGACTAAAAAGGATATTTACTA
1 ATAGTTGGATGACTAAAAAGGAAATTTACTA
* * * *
27262007 ATAGTT-AAGTAACCAAAAATGAAATTTACTA
1 ATAGTTGGA-TGACTAAAAAGGAAATTTACTA
27262038 ATAGTTAGG-TGACTA
1 ATAGTT-GGATGACTA
27262053 CTAGTGTAGT
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
30 1 0.03
31 34 0.97
ACGTcount: A:0.44, C:0.08, G:0.17, T:0.31
Consensus pattern (31 bp):
ATAGTTGGATGACTAAAAAGGAAATTTACTA
Found at i:27265691 original size:6 final size:6
Alignment explanation
Indices: 27265680--27265753 Score: 76
Period size: 6 Copynumber: 12.3 Consensus size: 6
27265670 GTAACCAGTG
** **
27265680 CACCAT CACCAT CACCAT CACCAT CACCAT CACCAT TTCCAT TTCCAT
1 CACCAT CACCAT CACCAT CACCAT CACCAT CACCAT CACCAT CACCAT
* * * *
27265728 CTCCAT CTCCAT CTCCAT CTCCAT CA
1 CACCAT CACCAT CACCAT CACCAT CA
27265754 TCTTCAAGTG
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 64 1.00
ACGTcount: A:0.26, C:0.47, G:0.00, T:0.27
Consensus pattern (6 bp):
CACCAT
Found at i:27276253 original size:132 final size:132
Alignment explanation
Indices: 27276014--27276275 Score: 472
Period size: 132 Copynumber: 2.0 Consensus size: 132
27276004 TTTGTACATT
27276014 AAAATTTCCCTGATAAGCATGATCTTTGAAAAGGTAATAAGTGCTCCGCAAAACATAAAAATAAG
1 AAAATTTCCCTGATAAGCATGATCTTTGAAAAGGTAATAAGTGCTCCGCAAAACATAAAAATAAG
** * *
27276079 TCATTATAAGCTTTCTTCCTCTCCGCATCTCATATGGTGCCATCCTTGTTTTAGGCTTCAAAGTA
66 TCACGATAAGCTTTCTTCCTCTCCACATCTCATATGGAGCCATCCTTGTTTTAGGCTTCAAAGTA
27276144 TC
131 TC
27276146 AAAATTTCCCTGATAAGCATGATCTTTGAAAAGGTAATAAGTGCTTCC-CAAAACATAAAAATAA
1 AAAATTTCCCTGATAAGCATGATCTTTGAAAAGGTAATAAGTGC-TCCGCAAAACATAAAAATAA
27276210 GTCACGATAAGCTTTCTTCCTCTCCACATCTCATATGGAGCCATCCTTGTTTTAGGCTTCAAAGT
65 GTCACGATAAGCTTTCTTCCTCTCCACATCTCATATGGAGCCATCCTTGTTTTAGGCTTCAAAGT
27276275 A
130 A
27276276 CATTGTTAAT
Statistics
Matches: 125, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
132 122 0.98
133 3 0.02
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.32
Consensus pattern (132 bp):
AAAATTTCCCTGATAAGCATGATCTTTGAAAAGGTAATAAGTGCTCCGCAAAACATAAAAATAAG
TCACGATAAGCTTTCTTCCTCTCCACATCTCATATGGAGCCATCCTTGTTTTAGGCTTCAAAGTA
TC
Found at i:27277818 original size:13 final size:13
Alignment explanation
Indices: 27277785--27277818 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
27277775 TGCTCTACCA
27277785 TTATTATTTTTTG
1 TTATTATTTTTTG
27277798 -TATATATTTTTTG
1 TTAT-TATTTTTTG
27277811 TTATTATT
1 TTATTATT
27277819 ATTAACATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 3 0.16
13 13 0.68
14 3 0.16
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.74
Consensus pattern (13 bp):
TTATTATTTTTTG
Found at i:27283909 original size:22 final size:20
Alignment explanation
Indices: 27283877--27283932 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 20
27283867 ATTAACATTC
*
27283877 TATTATTTTAATAAGAT-TTAA
1 TATTAATTTAATAA-ATATT-A
27283898 TATTAAATTTAATCAAATATTA
1 TATT-AATTTAAT-AAATATTA
27283920 TATTAATTTAATA
1 TATTAATTTAATA
27283933 TTAAAGTGAT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
20 1 0.03
21 12 0.39
22 14 0.45
23 4 0.13
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (20 bp):
TATTAATTTAATAAATATTA
Found at i:27283932 original size:16 final size:17
Alignment explanation
Indices: 27283892--27283937 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
27283882 TTTTAATAAG
27283892 ATTTAATATTAAATTTA
1 ATTTAATATTAAATTTA
** *
27283909 ATCAAATATTATA-TTA
1 ATTTAATATTAAATTTA
27283925 ATTTAATATTAAA
1 ATTTAATATTAAA
27283938 GTGATTAAGT
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
ATTTAATATTAAATTTA
Found at i:27292962 original size:21 final size:21
Alignment explanation
Indices: 27292936--27292983 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
27292926 AGGAGCTTAT
27292936 GGAACTAAAAGCTCAACTTCA
1 GGAACTAAAAGCTCAACTTCA
*
27292957 GGAACTGAAAGCTCAACTTCA
1 GGAACTAAAAGCTCAACTTCA
27292978 GGAACT
1 GGAACT
27292984 TCTCGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.40, C:0.23, G:0.19, T:0.19
Consensus pattern (21 bp):
GGAACTAAAAGCTCAACTTCA
Found at i:27295660 original size:25 final size:25
Alignment explanation
Indices: 27295623--27295670 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
27295613 CAGTTTCTAC
27295623 ATTTGTTTAAACCAGGTAAATTTGT
1 ATTTGTTTAAACCAGGTAAATTTGT
*
27295648 ATTTGTTTGAACCAGGTAAATTT
1 ATTTGTTTAAACCAGGTAAATTT
27295671 CGAGGCCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.08, G:0.17, T:0.44
Consensus pattern (25 bp):
ATTTGTTTAAACCAGGTAAATTTGT
Found at i:27298793 original size:21 final size:21
Alignment explanation
Indices: 27298753--27298791 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
27298743 ATTAATAAAA
27298753 GAATAATCATATATTCTTTTG
1 GAATAATCATATATTCTTTTG
27298774 GAATAAT-ATA-ATTCTTTT
1 GAATAATCATATATTCTTTT
27298792 TTCTAACTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 8 0.44
20 3 0.17
21 7 0.39
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.49
Consensus pattern (21 bp):
GAATAATCATATATTCTTTTG
Found at i:27298823 original size:74 final size:76
Alignment explanation
Indices: 27298687--27298834 Score: 183
Period size: 74 Copynumber: 2.0 Consensus size: 76
27298677 TTGGAAATTA
* *
27298687 ATATTCTTTTGAAACGAAAATAATTCTTTTTTTTCAACTATTCATTTACATTATCTATTAATAAA
1 ATATTCTTTTGAAACGAAAATAATTCTTTTTTCTCAACTATTCATTTACATTATCTACTAATAAA
27298752 AGAATAATCAT
66 AGAATAATCAT
* * * * * * * *
27298763 ATATTCTTTTGGAA-TAATATAATTCTTTTTTCT-AACTTTTCATTTTCCTTCTCTACTAATAAG
1 ATATTCTTTTGAAACGAAAATAATTCTTTTTTCTCAACTATTCATTTACATTATCTACTAATAAA
*
27298826 GGAATAATC
66 AGAATAATC
27298835 CTAATTTTCT
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
74 32 0.52
75 16 0.26
76 13 0.21
ACGTcount: A:0.34, C:0.14, G:0.05, T:0.47
Consensus pattern (76 bp):
ATATTCTTTTGAAACGAAAATAATTCTTTTTTCTCAACTATTCATTTACATTATCTACTAATAAA
AGAATAATCAT
Found at i:27300906 original size:28 final size:28
Alignment explanation
Indices: 27300836--27300921 Score: 100
Period size: 28 Copynumber: 3.0 Consensus size: 28
27300826 GTATCAGTGC
* ** *
27300836 AGTGTGGGCCTTAACCCGTTACAGTAACA
1 AGTGTGGGCCTTAGCCCAATACAGTAA-T
*
27300865 ATGTGTGGGTCTTAGCCCAATACAGTAAT
1 A-GTGTGGGCCTTAGCCCAATACAGTAAT
*
27300894 AGTGTGGGCCTTAGCCCAATATAGTAAT
1 AGTGTGGGCCTTAGCCCAATACAGTAAT
27300922 TAGTACAATG
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
28 25 0.51
29 2 0.04
30 22 0.45
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (28 bp):
AGTGTGGGCCTTAGCCCAATACAGTAAT
Found at i:27301302 original size:27 final size:27
Alignment explanation
Indices: 27301272--27301722 Score: 565
Period size: 27 Copynumber: 16.7 Consensus size: 27
27301262 TAATTCCTAG
* *
27301272 GGGTATATCAGTCATTTTACCCTAT-AA
1 GGGTATTTCAGTCATTTTACCCT-TCGA
*
27301299 GGGTATTTCAGTCATTTTACCTTTCGA
1 GGGTATTTCAGTCATTTTACCCTTCGA
*
27301326 GGGTATTTC-GATCATTTTACCCTTCAA
1 GGGTATTTCAG-TCATTTTACCCTTCGA
** *
27301353 GGGTATTTTGGTCATTTTACCCTTCGG
1 GGGTATTTCAGTCATTTTACCCTTCGA
*
27301380 GGGTATTTCAATCATTTTACCCTTCGA
1 GGGTATTTCAGTCATTTTACCCTTCGA
* *
27301407 GGGTATTTTAGTCATTTTACCTTTCG-
1 GGGTATTTCAGTCATTTTACCCTTCGA
** * *
27301433 GAGGTATTTTGGTTATTTTACCCTTCGG
1 G-GGTATTTCAGTCATTTTACCCTTCGA
* *
27301461 GGGTATTTCGGTCATTTTACCCTTTGA
1 GGGTATTTCAGTCATTTTACCCTTCGA
27301488 GGGTATTTC-GATCATTTTACCCTTCGA
1 GGGTATTTCAG-TCATTTTACCCTTCGA
*
27301515 GGGTATTTCAGTCATTTTACCCTTCGG
1 GGGTATTTCAGTCATTTTACCCTTCGA
* *
27301542 GGGTATTTC-GATCATTTTACTCTTTGA
1 GGGTATTTCAG-TCATTTTACCCTTCGA
*
27301569 GGGTATTTCGGTCATTTTACCCTTCGA
1 GGGTATTTCAGTCATTTTACCCTTCGA
27301596 GGGTATTTC-GATCATTTTACCCTTCGA
1 GGGTATTTCAG-TCATTTTACCCTTCGA
* *
27301623 GGGTATTTCAGTCTTTTTACCATTC-A
1 GGGTATTTCAGTCATTTTACCCTTCGA
*
27301649 GGGGTATTTCAGTCATTTTACCCTTTGA
1 -GGGTATTTCAGTCATTTTACCCTTCGA
*
27301677 GGGTATTTCAGTTATTTTACCCTTCGA
1 GGGTATTTCAGTCATTTTACCCTTCGA
*
27301704 GGGTATTTCGGTCATTTTA
1 GGGTATTTCAGTCATTTTA
27301723 TCACGAATCG
Statistics
Matches: 373, Mismatches: 38, Indels: 26
0.85 0.09 0.06
Matches are distributed among these distances:
26 7 0.02
27 360 0.97
28 6 0.02
ACGTcount: A:0.18, C:0.19, G:0.20, T:0.43
Consensus pattern (27 bp):
GGGTATTTCAGTCATTTTACCCTTCGA
Found at i:27302664 original size:18 final size:19
Alignment explanation
Indices: 27302622--27302664 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
27302612 GGAAAAATCG
*
27302622 ACAACAAGAGAAGAAGAAA
1 ACAAAAAGAGAAGAAGAAA
*
27302641 CCAAAAAGA-AAGAAGAAA
1 ACAAAAAGAGAAGAAGAAA
*
27302659 AGAAAA
1 ACAAAA
27302665 GATGAAGGAG
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.72, C:0.09, G:0.19, T:0.00
Consensus pattern (19 bp):
ACAAAAAGAGAAGAAGAAA
Found at i:27315089 original size:45 final size:45
Alignment explanation
Indices: 27315033--27315192 Score: 207
Period size: 45 Copynumber: 3.6 Consensus size: 45
27315023 TTGGCTTGAA
*
27315033 AAACGAATAAGACCATAGTTGAAAGACACTATGACACTATATTGG
1 AAACGAATAAGACCATAGTTGAAAGACACTATGACACTATATCGG
* *
27315078 AAACAAATAAGATCATAGTTGAAAGACACTATGACACTATATCGG
1 AAACGAATAAGACCATAGTTGAAAGACACTATGACACTATATCGG
* * * * *
27315123 AAATGAATAGGACCATAGTTTAAAGACACTATGGCAAC-ATGA-CAG
1 AAACGAATAAGACCATAGTTGAAAGACACTATGAC-ACTAT-ATCGG
*
27315168 AAATGAATAAGACCATAGTTGAAAG
1 AAACGAATAAGACCATAGTTGAAAG
27315193 TGTTGGAATG
Statistics
Matches: 101, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
45 98 0.97
46 3 0.03
ACGTcount: A:0.46, C:0.14, G:0.18, T:0.21
Consensus pattern (45 bp):
AAACGAATAAGACCATAGTTGAAAGACACTATGACACTATATCGG
Found at i:27318910 original size:27 final size:27
Alignment explanation
Indices: 27318873--27318934 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
27318863 AAACTCCAGA
*
27318873 AAAGGAATGCCTTTGTGGCAATATATG
1 AAAGGAATGCCTTTGTGGAAATATATG
*
27318900 AAAGGAATGCCTTTGTGGAAATGTATG
1 AAAGGAATGCCTTTGTGGAAATATATG
27318927 AAAGGAAT
1 AAAGGAAT
27318935 TCATTGACGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.27
Consensus pattern (27 bp):
AAAGGAATGCCTTTGTGGAAATATATG
Found at i:27320736 original size:22 final size:22
Alignment explanation
Indices: 27320705--27320773 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 22
27320695 TACTAGTGGC
27320705 TTATCCACATATTTCTTGCAGT
1 TTATCCACATATTTCTTGCAGT
** * *
27320727 TTATTTACATA--TCTAGTAGT
1 TTATCCACATATTTCTTGCAGT
27320747 TTATCCACATATTT-TTGGCAGT
1 TTATCCACATATTTCTT-GCAGT
27320769 TTATC
1 TTATC
27320774 TGCAAATACT
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
20 16 0.44
21 1 0.03
22 19 0.53
ACGTcount: A:0.25, C:0.17, G:0.10, T:0.48
Consensus pattern (22 bp):
TTATCCACATATTTCTTGCAGT
Found at i:27320756 original size:20 final size:20
Alignment explanation
Indices: 27320705--27320758 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
27320695 TACTAGTGGC
*
27320705 TTATCCACATATTTCTTGCAGT
1 TTATCCACATA--TCTAGCAGT
** *
27320727 TTATTTACATATCTAGTAGT
1 TTATCCACATATCTAGCAGT
27320747 TTATCCACATAT
1 TTATCCACATAT
27320759 TTTTGGCAGT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 17 0.65
22 9 0.35
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.46
Consensus pattern (20 bp):
TTATCCACATATCTAGCAGT
Found at i:27321366 original size:25 final size:25
Alignment explanation
Indices: 27321338--27321388 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
27321328 TTTTGAAAAG
27321338 TAAATAAGTTAGAAATCAACCAAGT
1 TAAATAAGTTAGAAATCAACCAAGT
27321363 TAAATAAGTTAGAAATCAACCAAGT
1 TAAATAAGTTAGAAATCAACCAAGT
27321388 T
1 T
27321389 TTCAAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.51, C:0.12, G:0.12, T:0.25
Consensus pattern (25 bp):
TAAATAAGTTAGAAATCAACCAAGT
Found at i:27328934 original size:23 final size:24
Alignment explanation
Indices: 27328894--27328946 Score: 74
Period size: 23 Copynumber: 2.2 Consensus size: 24
27328884 TATTTTGAAA
*
27328894 ATATATTAAAAATAAAAAACTAT-T
1 ATATTTTAAAAATAAAAAA-TATAT
27328918 ATATTTTAAAAAT-AAAAATATAT
1 ATATTTTAAAAATAAAAAATATAT
27328941 ATATTT
1 ATATTT
27328947 AATATATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 3 0.11
23 12 0.44
24 12 0.44
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (24 bp):
ATATTTTAAAAATAAAAAATATAT
Found at i:27328947 original size:22 final size:22
Alignment explanation
Indices: 27328894--27328948 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 22
27328884 TATTTTGAAA
27328894 ATATA-TTAAAAATAAAAAACT
1 ATATATTTAAAAATAAAAAACT
27328915 ATTATATTTTAAAAATAAAAATA-T
1 A-TATA-TTTAAAAATAAAAA-ACT
27328939 ATATATTTAA
1 ATATATTTAA
27328949 TATATTTTCG
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
21 1 0.03
22 9 0.30
23 4 0.13
24 15 0.50
25 1 0.03
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (22 bp):
ATATATTTAAAAATAAAAAACT
Found at i:27329033 original size:31 final size:33
Alignment explanation
Indices: 27328997--27329067 Score: 92
Period size: 31 Copynumber: 2.2 Consensus size: 33
27328987 CCGAGGAAAA
*
27328997 CGGGCCTAAATTTTTGCCC-AAG-CCCATATTT
1 CGGGCCTAAATTTTTACCCGAAGCCCCATATTT
*
27329028 CGGGCCTATATTTTTACCCGAAGCCTCCCATATTT
1 CGGGCCTAAATTTTTACCCGAAG-C-CCCATATTT
27329063 CGGGC
1 CGGGC
27329068 GGATCGTCTG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 17 0.50
32 3 0.09
35 14 0.41
ACGTcount: A:0.20, C:0.31, G:0.18, T:0.31
Consensus pattern (33 bp):
CGGGCCTAAATTTTTACCCGAAGCCCCATATTT
Found at i:27334654 original size:12 final size:13
Alignment explanation
Indices: 27334621--27334662 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 13
27334611 AGTGTTAACA
*
27334621 TGAATTTATGATT
1 TGAATTTGTGATT
*
27334634 TG-ATATGTGA-T
1 TGAATTTGTGATT
27334645 TGAATTTGTGATT
1 TGAATTTGTGATT
27334658 TGAAT
1 TGAAT
27334663 AATGGTTGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
11 3 0.12
12 13 0.54
13 8 0.33
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (13 bp):
TGAATTTGTGATT
Found at i:27336678 original size:26 final size:26
Alignment explanation
Indices: 27336606--27336678 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
27336596 CATTAGGGCG
*
27336606 TAGCAGGCTTCGTGCCGGTGTATATT
1 TAGCAGGCTTCGTGCCGATGTATATT
*
27336632 TAGCAGGCTTCGTGCCAATGTATATT
1 TAGCAGGCTTCGTGCCGATGTATATT
* * *
27336658 TAGCAAGCTTTGTGTCGATGT
1 TAGCAGGCTTCGTGCCGATGT
27336679 TTTTAGTAGC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.19, C:0.18, G:0.27, T:0.36
Consensus pattern (26 bp):
TAGCAGGCTTCGTGCCGATGTATATT
Found at i:27338258 original size:42 final size:41
Alignment explanation
Indices: 27338139--27338303 Score: 111
Period size: 43 Copynumber: 3.9 Consensus size: 41
27338129 GAAAACACAT
* * * *
27338139 ATATCACATACAATGCC-ATATCCCAAATATGGTCTTACATGTT
1 ATATCATAT-CAATGCCAATGTCCCAAACATGGTCTTAC--GTA
* * * * * *
27338182 AT-TACATATTAATGTCACTGTCCCAGACAGGGTCTTATGTGA
1 ATAT-CATATCAATGCCAATGTCCCAAACATGGTCTTACGT-A
* *
27338224 A-ATCATATACGATGCCAATGTCCTAAACATGGTCTTACACGTA
1 ATATCATAT-CAATGCCAATGTCCCAAACATGGTCTT--ACGTA
* *
27338267 ATCTCATATCAATGCCAATGTCCCAGACATGGTCTTA
1 ATATCATATCAATGCCAATGTCCCAAACATGGTCTTA
27338304 GACGAAATCA
Statistics
Matches: 92, Mismatches: 22, Indels: 18
0.70 0.17 0.14
Matches are distributed among these distances:
41 8 0.09
42 28 0.30
43 47 0.51
44 9 0.10
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (41 bp):
ATATCATATCAATGCCAATGTCCCAAACATGGTCTTACGTA
Found at i:27338288 original size:43 final size:44
Alignment explanation
Indices: 27338226--27338312 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 44
27338216 TTATGTGAAA
* * *
27338226 TCATATACGATGCCAATGTCCTAAACATGGTCTTACACGTAATC
1 TCATATACAATGCCAATGTCCCAAACATGGTCTTACACGAAATC
* *
27338270 TCATAT-CAATGCCAATGTCCCAGACATGGTCTTAGACGAAATC
1 TCATATACAATGCCAATGTCCCAAACATGGTCTTACACGAAATC
27338313 ACACCCCGAG
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
43 32 0.84
44 6 0.16
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (44 bp):
TCATATACAATGCCAATGTCCCAAACATGGTCTTACACGAAATC
Found at i:27338289 original size:85 final size:84
Alignment explanation
Indices: 27338141--27338303 Score: 202
Period size: 85 Copynumber: 1.9 Consensus size: 84
27338131 AAACACATAT
* * * * * *
27338141 ATCACATACAATGCCATATCCCAAATATGGTCTTACATGTTATTACATATTAATGTCACTGTCCC
1 ATCACATACAATGCCATATCCCAAACATGGTCTTACACGTAATTACATATCAATGCCAATGTCCC
27338206 AGACAGGGTCTTATGTGAA
66 AGACAGGGTCTTATGTGAA
* * * *
27338225 ATCATATACGATGCCAATGTCCTAAACATGGTCTTACACGTAATCT-CATATCAATGCCAATGTC
1 ATCACATACAATGCC-ATATCCCAAACATGGTCTTACACGTAAT-TACATATCAATGCCAATGTC
*
27338289 CCAGACATGGTCTTA
64 CCAGACAGGGTCTTA
27338304 GACGAAATCA
Statistics
Matches: 66, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
84 13 0.20
85 52 0.79
86 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (84 bp):
ATCACATACAATGCCATATCCCAAACATGGTCTTACACGTAATTACATATCAATGCCAATGTCCC
AGACAGGGTCTTATGTGAA
Found at i:27341934 original size:25 final size:25
Alignment explanation
Indices: 27341875--27341922 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
27341865 CATGATTTGT
*
27341875 AAATCGATAAGCTCATACAAGCTAC
1 AAATCGGTAAGCTCATACAAGCTAC
* *
27341900 AAATCAGTAAGCTCATACGAGCT
1 AAATCGGTAAGCTCATACAAGCT
27341923 GAGAATCGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.42, C:0.23, G:0.15, T:0.21
Consensus pattern (25 bp):
AAATCGGTAAGCTCATACAAGCTAC
Found at i:27349975 original size:24 final size:24
Alignment explanation
Indices: 27349927--27349973 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
27349917 ACTAGTCATA
*
27349927 GAGAGAATTGAGGAGGGATATTTG
1 GAGAGAATTGAGGAGGAATATTTG
*
27349951 GAGAGATTTGAGGAGAGAATATT
1 GAGAGAATTGAGGAG-GAATATT
27349974 GGGATTTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.36, C:0.00, G:0.38, T:0.26
Consensus pattern (24 bp):
GAGAGAATTGAGGAGGAATATTTG
Found at i:27350730 original size:81 final size:80
Alignment explanation
Indices: 27350605--27350884 Score: 346
Period size: 81 Copynumber: 3.5 Consensus size: 80
27350595 CTTCATATGG
* * ** * *
27350605 TAAAATGATCC-AAATACCCCTCATAGGGTAGAATGATCGCAATACCTCCATAGGGTAAAATGAT
1 TAAAATGA-CCGAAATA-CCCTCATAGGGTAAAATGACCAAAATACCACCATAGGGTAAAATGAC
27350669 CGAAATACCTCCATAGGA
64 CGAAATACC-CCATAGGA
* * * *
27350687 TAGAATGACCAAAATACCCTAATAGGGTAAAATGACCAAAATACCACCATAAGGTAAAATGACCG
1 TAAAATGACCGAAATACCCTCATAGGGTAAAATGACCAAAATACCACCATAGGGTAAAATGACCG
*
27350752 AAATACCCCCATAGGG
66 AAATA-CCCCATAGGA
* * * * * *
27350768 TAAAATAATCGAAATACCCTCATAGGGTAAAATAACCAAAATACCCCCATAGGATAGAATGACCG
1 TAAAATGACCGAAATACCCTCATAGGGTAAAATGACCAAAATACCACCATAGGGTAAAATGACCG
27350833 AAATACCCTCATAGGA
66 AAATACCC-CATAGGA
*
27350849 TAAAATGACCGAAATACCCTCATAGGATAAAATGAC
1 TAAAATGACCGAAATACCCTCATAGGGTAAAATGAC
27350885 TGTTGTACCC
Statistics
Matches: 170, Mismatches: 25, Indels: 7
0.84 0.12 0.03
Matches are distributed among these distances:
80 3 0.02
81 153 0.90
82 14 0.08
ACGTcount: A:0.44, C:0.22, G:0.15, T:0.19
Consensus pattern (80 bp):
TAAAATGACCGAAATACCCTCATAGGGTAAAATGACCAAAATACCACCATAGGGTAAAATGACCG
AAATACCCCATAGGA
Found at i:27350884 original size:27 final size:27
Alignment explanation
Indices: 27350597--27350884 Score: 314
Period size: 27 Copynumber: 10.6 Consensus size: 27
27350587 CAAAATATCT
*
27350597 TCATATGGTAAAATGATCC-AAATACCCC
1 TCATAGGGTAAAATGA-CCGAAATA-CCC
* * *
27350625 TCATAGGGTAGAATGATCGCAATA-CC
1 TCATAGGGTAAAATGACCGAAATACCC
*
27350651 TCCATAGGGTAAAATGATCGAAATA-CC
1 T-CATAGGGTAAAATGACCGAAATACCC
* * *
27350678 TCCATAGGATAGAATGACCAAAATACCC
1 T-CATAGGGTAAAATGACCGAAATACCC
* *
27350706 TAATAGGGTAAAATGACCAAAATACCAC
1 TCATAGGGTAAAATGACCGAAATACC-C
*
27350734 -CATAAGGTAAAATGACCGAAATACCC
1 TCATAGGGTAAAATGACCGAAATACCC
* * *
27350760 CCATAGGGTAAAATAATCGAAATACCC
1 TCATAGGGTAAAATGACCGAAATACCC
* *
27350787 TCATAGGGTAAAATAACCAAAATACCC
1 TCATAGGGTAAAATGACCGAAATACCC
* * *
27350814 CCATAGGATAGAATGACCGAAATACCC
1 TCATAGGGTAAAATGACCGAAATACCC
*
27350841 TCATAGGATAAAATGACCGAAATACCC
1 TCATAGGGTAAAATGACCGAAATACCC
*
27350868 TCATAGGATAAAATGAC
1 TCATAGGGTAAAATGAC
27350885 TGTTGTACCC
Statistics
Matches: 226, Mismatches: 29, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.02
27 200 0.88
28 22 0.10
ACGTcount: A:0.43, C:0.22, G:0.16, T:0.19
Consensus pattern (27 bp):
TCATAGGGTAAAATGACCGAAATACCC
Found at i:27357467 original size:39 final size:39
Alignment explanation
Indices: 27357419--27357501 Score: 148
Period size: 39 Copynumber: 2.1 Consensus size: 39
27357409 ATCATAATTA
*
27357419 TAATAATTCATGAAAAGTATTTGCAACACCAACCATAAT
1 TAATAATTCATGAAAAGTATTTACAACACCAACCATAAT
*
27357458 TAATAATTCATGAAAAGTGTTTACAACACCAACCATAAT
1 TAATAATTCATGAAAAGTATTTACAACACCAACCATAAT
27357497 TAATA
1 TAATA
27357502 TATTAATAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.47, C:0.17, G:0.07, T:0.29
Consensus pattern (39 bp):
TAATAATTCATGAAAAGTATTTACAACACCAACCATAAT
Found at i:27359777 original size:15 final size:15
Alignment explanation
Indices: 27359757--27359804 Score: 69
Period size: 15 Copynumber: 3.1 Consensus size: 15
27359747 ATCAGGAAGC
*
27359757 TCATAAGCGCCATTA
1 TCATAAGAGCCATTA
*
27359772 TCATAAGAGCCAATA
1 TCATAAGAGCCATTA
27359787 TCATAAGAGCCAGTTA
1 TCATAAGAGCCA-TTA
27359803 TC
1 TC
27359805 GAGAAGCTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
15 25 0.86
16 4 0.14
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (15 bp):
TCATAAGAGCCATTA
Found at i:27359823 original size:25 final size:23
Alignment explanation
Indices: 27359787--27359836 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
27359777 AGAGCCAATA
*
27359787 TCATAAGAGCCAGTTATCGAGAAGC
1 TCATAAGAGCCA--TAACGAGAAGC
*
27359812 TCATAAGCGCCATAACGAGAAGC
1 TCATAAGAGCCATAACGAGAAGC
27359835 TC
1 TC
27359837 GCAAGAACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 12 0.52
25 11 0.48
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.18
Consensus pattern (23 bp):
TCATAAGAGCCATAACGAGAAGC
Found at i:27359904 original size:24 final size:25
Alignment explanation
Indices: 27359848--27359910 Score: 83
Period size: 25 Copynumber: 2.6 Consensus size: 25
27359838 CAAGAACCAT
* *
27359848 ATAACGGGAAGCTCGTGAGAGCCAA
1 ATAACGGGATGCTCATGAGAGCCAA
* *
27359873 ATATCGGGATGCTCATGAGAG-CTA
1 ATAACGGGATGCTCATGAGAGCCAA
27359897 ATAACGGGATGCTC
1 ATAACGGGATGCTC
27359911 TTTCGGAAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
24 15 0.45
25 18 0.55
ACGTcount: A:0.32, C:0.19, G:0.30, T:0.19
Consensus pattern (25 bp):
ATAACGGGATGCTCATGAGAGCCAA
Found at i:27362371 original size:116 final size:116
Alignment explanation
Indices: 27362167--27362396 Score: 361
Period size: 116 Copynumber: 2.0 Consensus size: 116
27362157 AATAGGATGT
* * * * *
27362167 CATGTCACTTTTCCATTACGTTTGTAATGAAAAATGGTTAGAAGGACTGATTTGTTATTTTTCAA
1 CATGTCACTTTTCCATTACATTTGTAATGAAAAATGATTAAAAGGACTAATTTATTATTTTTCAA
* *
27362232 AAGTTGAGTGACTGAATTGAAATCAGAGTGACTGTTTTGTCAGCTACATGC
66 AAGTTGAGTCACTGAATTGAAATCAGAGTGACTGTTTTGTCAGCCACATGC
* * **
27362283 CATGTCACTTTTCTATTACATTTGTAATGGAAAATGATTAAAAGGACTAATTTATTATTTTTGGA
1 CATGTCACTTTTCCATTACATTTGTAATGAAAAATGATTAAAAGGACTAATTTATTATTTTTCAA
27362348 AAGTTGAGTCACTGAATTGAAATCAGAGTGACTGTTTTGTCAGCCACAT
66 AAGTTGAGTCACTGAATTGAAATCAGAGTGACTGTTTTGTCAGCCACAT
27362397 CAAAGTTGAG
Statistics
Matches: 103, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
116 103 1.00
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (116 bp):
CATGTCACTTTTCCATTACATTTGTAATGAAAAATGATTAAAAGGACTAATTTATTATTTTTCAA
AAGTTGAGTCACTGAATTGAAATCAGAGTGACTGTTTTGTCAGCCACATGC
Found at i:27364054 original size:24 final size:24
Alignment explanation
Indices: 27364022--27364070 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
27364012 TCTACTCGTA
27364022 TTATGGTATGATTTTCATAATCAT
1 TTATGGTATGATTTTCATAATCAT
27364046 TTATGGTATGATTTTCATAATCAT
1 TTATGGTATGATTTTCATAATCAT
27364070 T
1 T
27364071 CTTCTTGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.08, G:0.12, T:0.51
Consensus pattern (24 bp):
TTATGGTATGATTTTCATAATCAT
Found at i:27365687 original size:15 final size:15
Alignment explanation
Indices: 27365667--27365699 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
27365657 ATGCTTAGTA
27365667 TCTATTTCCCAACCT
1 TCTATTTCCCAACCT
27365682 TCTATTTCCCAACCT
1 TCTATTTCCCAACCT
27365697 TCT
1 TCT
27365700 TGTTGCATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.18, C:0.39, G:0.00, T:0.42
Consensus pattern (15 bp):
TCTATTTCCCAACCT
Found at i:27371727 original size:43 final size:43
Alignment explanation
Indices: 27371654--27371761 Score: 162
Period size: 43 Copynumber: 2.5 Consensus size: 43
27371644 ACGTCCAGAC
* **
27371654 ATGGTCTTACATGGAAATCTCGTATAGATGTCAATAGCCCAGCT
1 ATGGTCTTACA-CGAAATCTCAAATAGATGTCAATAGCCCAGCT
*
27371698 ATGGTCTTACACGAAATCTCAAATCGATGTCAATAGCCCAGCT
1 ATGGTCTTACACGAAATCTCAAATAGATGTCAATAGCCCAGCT
*
27371741 ATGGTCTTATACGAAATCTCA
1 ATGGTCTTACACGAAATCTCA
27371762 CCTCAGAAGT
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
43 48 0.81
44 11 0.19
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCTCAAATAGATGTCAATAGCCCAGCT
Found at i:27371912 original size:30 final size:30
Alignment explanation
Indices: 27371876--27371958 Score: 112
Period size: 31 Copynumber: 2.7 Consensus size: 30
27371866 ATCCAATGCT
*
27371876 CAAATCAATTCGGCAATATATATCCATATA
1 CAAATCAATTCGGCAATATATATCCACATA
* *
27371906 CGAATCAAATTCGGCAATATATATCTACATA
1 CAAATC-AATTCGGCAATATATATCCACATA
* *
27371937 CAAATCAATTCGGTAATGTATA
1 CAAATCAATTCGGCAATATATA
27371959 AAACATATAC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
30 19 0.41
31 27 0.59
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (30 bp):
CAAATCAATTCGGCAATATATATCCACATA
Found at i:27377453 original size:60 final size:62
Alignment explanation
Indices: 27377389--27377548 Score: 173
Period size: 63 Copynumber: 2.6 Consensus size: 62
27377379 AAGTAGGTTA
** *
27377389 TATATTAATTTTCTAA-T-ATTAT-TAATTATTATTTTTATTAATTTATATTTTAATAATAAT
1 TATATTAATAATCTAATTAATTATAT-ATTATTATTTTTATTAATTCATATTTTAATAATAAT
* * *
27377449 TATATTAAGAATGTAATTAAATTATATATTTTTATTTTTATTAATTCATATTTTAATAATAAT
1 TATATTAATAATCTAATT-AATTATATATTATTATTTTTATTAATTCATATTTTAATAATAAT
* * * * *
27377512 CATATTAATAATGTTAATAAATTAAATATTTTTATTT
1 TATATTAATAAT-CTAATTAATTATATATTATTATTT
27377549 AATAAAAATC
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
60 12 0.14
61 1 0.01
63 66 0.79
64 5 0.06
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (62 bp):
TATATTAATAATCTAATTAATTATATATTATTATTTTTATTAATTCATATTTTAATAATAAT
Found at i:27377487 original size:63 final size:63
Alignment explanation
Indices: 27377417--27377548 Score: 212
Period size: 63 Copynumber: 2.1 Consensus size: 63
27377407 TTATTAATTA
* * *
27377417 TTATTTTTATTAATTTATATTTTAATAATAATTATATTAAGAATG-TAATTAAATTATATATTT
1 TTATTTTTATTAATTCATATTTTAATAATAATCATATTAAGAATGTTAA-TAAATTAAATATTT
*
27377480 TTATTTTTATTAATTCATATTTTAATAATAATCATATTAATAATGTTAATAAATTAAATATTT
1 TTATTTTTATTAATTCATATTTTAATAATAATCATATTAAGAATGTTAATAAATTAAATATTT
27377543 TTATTT
1 TTATTT
27377549 AATAAAAATC
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
63 61 0.95
64 3 0.05
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (63 bp):
TTATTTTTATTAATTCATATTTTAATAATAATCATATTAAGAATGTTAATAAATTAAATATTT
Found at i:27381543 original size:21 final size:21
Alignment explanation
Indices: 27381517--27381570 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
27381507 AACAGTGGTG
* *
27381517 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGCA
*
27381538 GCGGTGAGATTGGATACTGCA
1 GCGGTGAGATTAGATACTGCA
27381559 GCGGTGAGATTA
1 GCGGTGAGATTA
27381571 AAAACAATGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.24, C:0.11, G:0.37, T:0.28
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGCA
Found at i:27384240 original size:20 final size:20
Alignment explanation
Indices: 27384215--27384264 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
27384205 TGGCTTAAAA
27384215 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
27384235 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
27384252 GTGGTAGTGGATT
1 TTGGTAGTGGATT
27384265 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:27388880 original size:20 final size:20
Alignment explanation
Indices: 27388855--27388904 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
27388845 TGGCTTAAAA
27388855 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
27388875 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
27388892 GTGGTAGTGGATT
1 TTGGTAGTGGATT
27388905 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:27391840 original size:17 final size:16
Alignment explanation
Indices: 27391814--27391845 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
27391804 ATATATAATT
27391814 AAAAAATAATTACATA
1 AAAAAATAATTACATA
27391830 AAAATAATAATTACAT
1 AAAA-AATAATTACAT
27391846 CCTAAAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (16 bp):
AAAAAATAATTACATA
Found at i:27392192 original size:28 final size:28
Alignment explanation
Indices: 27392160--27392214 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
27392150 CCTAGGCCAG
27392160 GTCGGGTCGGAGCCGGGTCGGCCTCCCA
1 GTCGGGTCGGAGCCGGGTCGGCCTCCCA
*
27392188 GTCGGGTCGGAGCCGGGTTGGCCTCCC
1 GTCGGGTCGGAGCCGGGTCGGCCTCCC
27392215 CAAAACGATG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.05, C:0.35, G:0.44, T:0.16
Consensus pattern (28 bp):
GTCGGGTCGGAGCCGGGTCGGCCTCCCA
Found at i:27392421 original size:20 final size:20
Alignment explanation
Indices: 27392396--27392443 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
27392386 ATCGACCACC
27392396 GCGCCGGCCGTCGATCTCCA
1 GCGCCGGCCGTCGATCTCCA
27392416 GCGCCGGCCGTCGATCTCCA
1 GCGCCGGCCGTCGATCTCCA
27392436 GCGCCGGC
1 GCGCCGGC
27392444 ACTGCTGTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.08, C:0.46, G:0.33, T:0.12
Consensus pattern (20 bp):
GCGCCGGCCGTCGATCTCCA
Found at i:27393472 original size:44 final size:43
Alignment explanation
Indices: 27393385--27394109 Score: 219
Period size: 44 Copynumber: 16.8 Consensus size: 43
27393375 ACTAAATACG
* *
27393385 ATCTGCTCT-CTGCAACTTCAGAGAGATAAGA-T-CCAAGGTTTTA
1 ATCTGCTCTACTGCAACTTCAG-GAGATAGGATTACC--GGCTTTA
** * *
27393428 ATCCACTCCACTGCAACTTCAGGAAGATAGGATTATCGGCTTTA
1 ATCTGCTCTACTGCAACTTCAGG-AGATAGGATTACCGGCTTTA
*
27393472 ATCTGCTCTACTGCAACTTCAGCGGGATAGGATTACCGGCTTTA
1 ATCTGCTCTACTGCAACTTCAG-GAGATAGGATTACCGGCTTTA
* * ** *
27393516 ATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCA
1 ATCTGCTCTACTGCAACTTCA-GGAGATAGGA-TTACCGGCTTTA
* * * * ** *
27393561 GTCTGC-CTCACTGCAACTTCAGAAGGATAAGACTAAATGG----G
1 ATCTGCTCT-ACTGCAACTTCAGGA-GATAGGA-TTACCGGCTTTA
* * * * *
27393602 ATCTGCTCT-TTGGAACTTCAGAGAGATAAGATCTA-AGGTTTTA
1 ATCTGCTCTACTGCAACTTCAG-GAGATAGGAT-TACCGGCTTTA
* * *
27393645 ATCCGC-CCACTGCAACTTCAGCGGGATAGGATTACCGGCTTTA
1 ATCTGCTCTACTGCAACTTCAG-GAGATAGGATTACCGGCTTTA
* * * ** ** *
27393688 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGTCATCTTCA
1 ATCTGCTCTACTGCAACTTCA-GGAGATAGGA-TTACCGGCTTTA
* * * * * ** *
27393733 GTCTGC-CTCACTACAACTTCAGAAGGATAAGACTAAATGG----G
1 ATCTGCTCT-ACTGCAACTTCAGGA-GATAGGA-TTACCGGCTTTA
* * *
27393774 ATCTGCTCT-CTGCAACTTCAGAGAGATAAGATCTA-AGGTTTTA
1 ATCTGCTCTACTGCAACTTCAG-GAGATAGGAT-TACCGGCTTTA
** * *
27393817 ATCCAC-CCACTGCAACTTCAGCAGGATAGGATTACCGGCTTTA
1 ATCTGCTCTACTGCAACTTCAGGA-GATAGGATTACCGGCTTTA
* * * * ** ** *
27393860 ATCTGCTCCACTGTAACTTTAGGGAGATAAGATTTGTCATCTTCA
1 ATCTGCTCTACTGCAACTTCA-GGAGATAGGA-TTACCGGCTTTA
* * * ***
27393905 GTCTGC-CTTACTGCAACTTCAGGAGGATAAGACTTGCTTAC-TTA
1 ATCTGCTC-TACTGCAACTTCAGGA-GATAGGA-TTACCGGCTTTA
* * * * * * ***
27393949 GTCCGCTCCACTGCAACTTCAGGGAGATAAGACTA---GATGCG
1 ATCTGCTCTACTGCAACTTCA-GGAGATAGGATTACCGGCTTTA
* * *
27393990 ATCTGCT-TTCTGCAACTTCAGAGAGATAAGATCTA-AGG-TTTCA
1 ATCTGCTCTACTGCAACTTCAG-GAGATAGGAT-TACCGGCTTT-A
* * * *
27394033 ATCCGC-CCACTGCAACTTCAGCGGGATAGGATTATCGGCTTTA
1 ATCTGCTCTACTGCAACTTCAG-GAGATAGGATTACCGGCTTTA
* *
27394076 ATCTGCTCTACTGCAACTTTAGGGAGATAAGATT
1 ATCTGCTCTACTGCAACTTCA-GGAGATAGGATT
27394110 TGTCATCTTC
Statistics
Matches: 503, Mismatches: 128, Indels: 101
0.69 0.17 0.14
Matches are distributed among these distances:
39 7 0.01
40 57 0.11
41 19 0.04
42 14 0.03
43 109 0.22
44 189 0.38
45 107 0.21
46 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (43 bp):
ATCTGCTCTACTGCAACTTCAGGAGATAGGATTACCGGCTTTA
Found at i:27393516 original size:88 final size:86
Alignment explanation
Indices: 27393385--27394280 Score: 214
Period size: 89 Copynumber: 10.4 Consensus size: 86
27393375 ACTAAATACG
*
27393385 ATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAG
1 ATCTGCTCTCTGCAACTTCAGAGAGATAAGATCC-AGGCTTTAATCCACTCCACTGCAACTTCAG
*
27393450 GAAGATAGGATTATCGGCTTTA
65 GAAGATAAGATTATCGGCTTTA
* * * ** *
27393472 ATCTGCTCTACTGCAACTTCAGCGGGATAGGATTACC-GGCTTTAATCTGCTCTACTGCAACTTC
1 ATCTGCTCT-CTGCAACTTCAGAGAGATAAGA-T-CCAGGCTTTAATCCACTCCACTGCAACTTC
* *
27393536 AGGGAGATAAGATT-T-GCCATCTTCA
63 AGGAAGATAAGATTATCGGC-T-TT-A
* * * ** *** ** ** *
27393561 GTCTGCCTCACTGCAACTTCAGA-AGGATAAGA-CTA-AATGGGATCTGCT-CTTTGGAACTTCA
1 ATCTG-CTCTCTGCAACTTCAGAGA-GATAAGATCCAGGCTTTAATCCACTCCACTGCAACTTCA
* *
27393622 -GAGAGATAAGATCTA-AGGTTTTA
64 GGA-AGATAAGAT-TATCGGCTTTA
* * * * * * ** *
27393645 ATCCGCCCACTGCAACTTCAGCGGGATAGGATTACC-GGCTTTAATCTGCTCCACTGTAACTTCA
1 ATCTGCTCTCTGCAACTTCAGAGAGATAAGA-T-CCAGGCTTTAATCCACTCCACTGCAACTTCA
* * ** *
27393709 GGGAGATAAGATTTGTCATCTTCA
64 GGAAGATAAGA-TTATCGGCTTTA
* * * * ** *** ** *
27393733 GTCTGCCTCACTACAACTTCAGA-AGGATAAGA-CTA-AATGGGATCTGCT-CTCTGCAACTTCA
1 ATCTG-CTCTCTGCAACTTCAGAGA-GATAAGATCCAGGCTTTAATCCACTCCACTGCAACTTCA
* *
27393794 -GAGAGATAAGATCTA-AGGTTTTA
64 GGA-AGATAAGAT-TATCGGCTTTA
** * * * ** * *
27393817 ATCCACCCACTGCAACTTCAGCAG-GATAGGATTACC-GGCTTTAATCTGCTCCACTGTAACTTT
1 ATCTGCTCTCTGCAACTTCAG-AGAGATAAGA-T-CCAGGCTTTAATCCACTCCACTGCAACTTC
* * ** *
27393880 AGGGAGATAAGATTTGTCATCTTCA
63 AGGAAGATAAGA-TTATCGGCTTTA
* ** * *
27393905 GTCTGC-CTTACTGCAACTTCAG-GAGGATAAGA--CTTGCTTACTTAGTCCGCTCCACTGCAAC
1 ATCTGCTC-T-CTGCAACTTCAGAGA-GATAAGATCCAGGC-T--TTAATCCACTCCACTGCAAC
* * * ***
27393966 TTCAGGGAGATAAGACTA---GATGCG
60 TTCAGGAAGATAAGATTATCGGCTTTA
* * *
27393990 ATCTGCTTTCTGCAACTTCAGAGAGATAAGATCTAAGG-TTTCAATCCGC-CCACTGCAACTTCA
1 ATCTGCTCTCTGCAACTTCAGAGAGATAAGATC-CAGGCTTT-AATCCACTCCACTGCAACTTCA
* *
27394053 GCG-GGATAGGATTATCGGCTTTA
64 G-GAAGATAAGATTATCGGCTTTA
* * * * * * *
27394076 ATCTGCTCTACTGCAACTTTAGGGAGATAAGATTTGTCA-TCTTCAGTCTGC-CT-CACTACAAC
1 ATCTGCTCT-CTGCAACTTCAGAGAGATAAGA--T-CCAGGCTTTAATC--CACTCCACTGCAAC
* *
27394138 TTCA-GAAGGATAAGACTAAAT-GG----G
60 TTCAGGAA-GATAAGA-T-TATCGGCTTTA
* *
27394162 ATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCAC-CCACTGCAACTTCAG
1 ATCTGCTCTCTGCAACTTCAGAGAGATAAGATC-CAGGCTTTAATCCACTCCACTGCAACTTCAG
* * * *
27394226 CG-GGATAGGATTACCGACTTTA
65 -GAAGATAAGATTATCGGCTTTA
* * * *
27394248 ATCTGCTCCACTGTAACTTTAGGGAGATAAGAT
1 ATCTGCT-CTCTGCAACTTCAGAGAGATAAGAT
27394281 TTATCATCTT
Statistics
Matches: 575, Mismatches: 155, Indels: 158
0.65 0.17 0.18
Matches are distributed among these distances:
81 1 0.00
82 3 0.01
83 87 0.15
84 44 0.08
85 73 0.13
86 68 0.12
87 96 0.17
88 76 0.13
89 116 0.20
90 9 0.02
91 2 0.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (86 bp):
ATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAGGCTTTAATCCACTCCACTGCAACTTCAGG
AAGATAAGATTATCGGCTTTA
Found at i:27393659 original size:172 final size:172
Alignment explanation
Indices: 27393481--27393938 Score: 817
Period size: 172 Copynumber: 2.7 Consensus size: 172
27393471 AATCTGCTCT
* *
27393481 ACTGCAACTTCAGCGGGATAGGATTACCGGCTTTAATCTGCTCTACTGCAACTTCAGGGAGATAA
1 ACTGCAACTTCAGCGGGATAGGATTACCGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAA
*
27393546 GATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGAAGGATAAGACTAAATGGGATCTGCTCT
66 GATTTGTCATCTTCAGTCTGCCTCACTGCAACTTCAGAAGGATAAGACTAAATGGGATCTGCTCT
* * *
27393611 TTGGAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCCC
131 CTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACCC
27393653 ACTGCAACTTCAGCGGGATAGGATTACCGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAA
1 ACTGCAACTTCAGCGGGATAGGATTACCGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAA
*
27393718 GATTTGTCATCTTCAGTCTGCCTCACTACAACTTCAGAAGGATAAGACTAAATGGGATCTGCTCT
66 GATTTGTCATCTTCAGTCTGCCTCACTGCAACTTCAGAAGGATAAGACTAAATGGGATCTGCTCT
27393783 CTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACCC
131 CTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACCC
* *
27393825 ACTGCAACTTCAGCAGGATAGGATTACCGGCTTTAATCTGCTCCACTGTAACTTTAGGGAGATAA
1 ACTGCAACTTCAGCGGGATAGGATTACCGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAA
* *
27393890 GATTTGTCATCTTCAGTCTGCCTTACTGCAACTTCAGGAGGATAAGACT
66 GATTTGTCATCTTCAGTCTGCCTCACTGCAACTTCAGAAGGATAAGACT
27393939 TGCTTACTTA
Statistics
Matches: 274, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
172 274 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (172 bp):
ACTGCAACTTCAGCGGGATAGGATTACCGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAA
GATTTGTCATCTTCAGTCTGCCTCACTGCAACTTCAGAAGGATAAGACTAAATGGGATCTGCTCT
CTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACCC
Found at i:27393672 original size:83 final size:83
Alignment explanation
Indices: 27393569--27393844 Score: 275
Period size: 83 Copynumber: 3.3 Consensus size: 83
27393559 CAGTCTGCCT
* *
27393569 CACTGCAACTTCAGAAGGATAAGACTAAATGGGATCTGCTCTTTGGAACTTCAGAGAGATAAGAT
1 CACTGCAACTTCAGAAGGATAAGACTAAATGGGATCTGCTCTCTGCAACTTCAGAGAGATAAGAT
27393634 CTAAGGTTTTAATCCGCC
66 CTAAGGTTTTAATCCGCC
** * * ** * * * *
27393652 CACTGCAACTTCAGCGGGATAGGA-TTACCGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGAT
1 CACTGCAACTTCAGAAGGATAAGACTAAATGG----GATCTGCT-CTCTGCAACTTCAGAGAGAT
* **** * * *
27393716 AAGATTTGTCATCTTCAGTCTGCC
61 AAGATCTAAGGT-TTTAATCCGCC
*
27393740 TCACTACAACTTCAGAAGGATAAGACTAAATGGGATCTGCTCTCTGCAACTTCAGAGAGATAAGA
1 -CACTGCAACTTCAGAAGGATAAGACTAAATGGGATCTGCTCTCTGCAACTTCAGAGAGATAAGA
*
27393805 TCTAAGGTTTTAATCCACC
65 TCTAAGGTTTTAATCCGCC
*
27393824 CACTGCAACTTCAGCAGGATA
1 CACTGCAACTTCAGAAGGATA
27393845 GGATTACCGG
Statistics
Matches: 144, Mismatches: 41, Indels: 16
0.72 0.20 0.08
Matches are distributed among these distances:
82 4 0.03
83 40 0.28
84 7 0.05
85 24 0.17
86 14 0.10
87 23 0.16
88 8 0.06
89 20 0.14
90 4 0.03
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.27
Consensus pattern (83 bp):
CACTGCAACTTCAGAAGGATAAGACTAAATGGGATCTGCTCTCTGCAACTTCAGAGAGATAAGAT
CTAAGGTTTTAATCCGCC
Found at i:27393752 original size:217 final size:217
Alignment explanation
Indices: 27393355--27393754 Score: 549
Period size: 217 Copynumber: 1.8 Consensus size: 217
27393345 CCACTCCTGG
*
27393355 TGCAACTTCAGGGAGATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCA
1 TGCAACTTCAGAGAGATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCA
* *
27393420 AGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTATCGGCTTTAATCTGCTCTACTG
66 AGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTACCGGCTTTAATCTGCTCCACTG
* * * *
27393485 CAACTTCAGCGGGATAGGATTACCGGCTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATT
131 CAACTTCAGCGGGATAAGATTACCAGCTTCAATCTGCTCTACTACAACTTCAGGGAGATAAGATT
27393550 TGCCATCTTCAGTCTGCCTCAC
196 TGCCATCTTCAGTCTGCCTCAC
** * * *
27393572 TGCAACTTCAGA-AGGATAAGACTAAATGGGATCTGCTCTTTGGAACTTCAGAGAGATAAGATCT
1 TGCAACTTCAGAGA-GATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCC
* *
27393636 AAGGTTTTAATCCGC-CCACTGCAACTTCAGCG-GGATAGGATTACCGGCTTTAATCTGCTCCAC
65 AAGGTTTTAATCCACTCCACTGCAACTTCAG-GAAGATAGGATTACCGGCTTTAATCTGCTCCAC
* ** * *
27393699 TGTAACTTCAG-GGAGATAAGATTTGTCATCTTCAGTCTGC-CTCACTACAACTTCAG
129 TGCAACTTCAGCGG-GATAAGA-TTACCAGCTTCAATCTGCTCT-ACTACAACTTCAG
27393755 AAGGATAAGA
Statistics
Matches: 159, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
215 2 0.01
216 62 0.39
217 95 0.60
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (217 bp):
TGCAACTTCAGAGAGATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCA
AGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTACCGGCTTTAATCTGCTCCACTG
CAACTTCAGCGGGATAAGATTACCAGCTTCAATCTGCTCTACTACAACTTCAGGGAGATAAGATT
TGCCATCTTCAGTCTGCCTCAC
Found at i:27393995 original size:216 final size:216
Alignment explanation
Indices: 27393741--27394154 Score: 686
Period size: 216 Copynumber: 1.9 Consensus size: 216
27393731 CAGTCTGCCT
*
27393741 CACTACAACTTCAGAAGGATAAGACTAAATGGGATCTGCTCTCTGCAACTTCAGAGAGATAAGAT
1 CACTACAACTTCAGAAGGATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGAT
*
27393806 CTAAGGTTTTAATCCACCCACTGCAACTTCAGCAGGATAGGATTACCGGCTTTAATCTGCTCCAC
66 CTAAGGTTTCAATCCACCCACTGCAACTTCAGCAGGATAGGATTACCGGCTTTAATCTGCTCCAC
* * * *
27393871 TGTAACTTTAGGGAGATAAGATTTGTCATCTTCAGTCTGCCTTACTGCAACTTCAGGAGGATAAG
131 TGCAACTTTAGGGAGATAAGATTTGTCATCTTCAGTCTGCCTCACTACAACTTCAGAAGGATAAG
27393936 ACTTGCTTACTTAGTCCGCTC
196 ACTTGCTTACTTAGTCCGCTC
* * * *
27393957 CACTGCAACTTCAG-GGAGATAAGACTAGATGCGATCTGCTTTCTGCAACTTCAGAGAGATAAGA
1 CACTACAACTTCAGAAG-GATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGA
* * * *
27394021 TCTAAGGTTTCAATCCGCCCACTGCAACTTCAGCGGGATAGGATTATCGGCTTTAATCTGCTCTA
65 TCTAAGGTTTCAATCCACCCACTGCAACTTCAGCAGGATAGGATTACCGGCTTTAATCTGCTCCA
27394086 CTGCAACTTTAGGGAGATAAGATTTGTCATCTTCAGTCTGCCTCACTACAACTTCAGAAGGATAA
130 CTGCAACTTTAGGGAGATAAGATTTGTCATCTTCAGTCTGCCTCACTACAACTTCAGAAGGATAA
27394151 GACT
195 GACT
27394155 AAATGGGATC
Statistics
Matches: 183, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
215 1 0.01
216 182 0.99
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (216 bp):
CACTACAACTTCAGAAGGATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGAT
CTAAGGTTTCAATCCACCCACTGCAACTTCAGCAGGATAGGATTACCGGCTTTAATCTGCTCCAC
TGCAACTTTAGGGAGATAAGATTTGTCATCTTCAGTCTGCCTCACTACAACTTCAGAAGGATAAG
ACTTGCTTACTTAGTCCGCTC
Found at i:27394074 original size:388 final size:388
Alignment explanation
Indices: 27393369--27394370 Score: 1588
Period size: 388 Copynumber: 2.6 Consensus size: 388
27393359 ACTTCAGGGA
** *
27393369 GATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCAC
1 GATAAGACTAAATGGGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCAC
* * * * * *
27393434 TCCACTGCAACTTCAGGAAGATAGGATTATCGGCTTTAATCTGCTCTACTGCAACTTCAGCGG-G
66 -CCACTGCAACTTCAGCAGGATAGGATTACCGGCTTTAATCTGCTCCACTGTAACTTTAG-GGAG
* * ** * * * *
27393498 ATAGGA-TTACCGGCTTTAATCTG-CTCTACTGCAACTTCAGG-GAGATAAGATTTGC-CATCTT
129 ATAAGATTTATCATCTTCAGTCTGCCT-TACTGCAACTTCAGGAG-GATAAGACTTGCTTA-CTT
* * * *
27393559 CAGTCTGC-CTCACTGCAACTTCA-GAAGGATAAGACTAAATGGGATCTGCTCTTTGGAACTTCA
191 -AGTCCGCTC-CACTGCAACTTCAGGGA-GATAAGACTAAATGCGATCTGCTCTTTGCAACTTCA
*
27393622 GAGAGATAAGATCTAAGGTTTTAATCCGCCCACTGCAACTTCAGCGGGATAGGATTACCGGCTTT
253 GAGAGATAAGATCTAAGGTTTCAATCCGCCCACTGCAACTTCAGCGGGATAGGATTACCGGCTTT
*
27393687 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGTCATCTTCAGTCTGCCTCACTACAACTT
318 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTCATCTTCAGTCTGCCTCACTACAACTT
27393752 CAGAAG
383 CAGAAG
27393758 GATAAGACTAAATGGGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCAC
1 GATAAGACTAAATGGGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCAC
27393823 CCACTGCAACTTCAGCAGGATAGGATTACCGGCTTTAATCTGCTCCACTGTAACTTTAGGGAGAT
66 CCACTGCAACTTCAGCAGGATAGGATTACCGGCTTTAATCTGCTCCACTGTAACTTTAGGGAGAT
*
27393888 AAGATTTGTCATCTTCAGTCTGCCTTACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCC
131 AAGATTTATCATCTTCAGTCTGCCTTACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCC
*
27393953 GCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCT-TTCTGCAACTTCAGAGAGAT
196 GCTCCACTGCAACTTCAGGGAGATAAGACTAAATGCGATCTGCTCTT-TGCAACTTCAGAGAGAT
*
27394017 AAGATCTAAGGTTTCAATCCGCCCACTGCAACTTCAGCGGGATAGGATTATCGGCTTTAATCTGC
260 AAGATCTAAGGTTTCAATCCGCCCACTGCAACTTCAGCGGGATAGGATTACCGGCTTTAATCTGC
* *
27394082 TCTACTGCAACTTTAGGGAGATAAGATTTGTCATCTTCAGTCTGCCTCACTACAACTTCAGAAG
325 TCCACTGCAACTTCAGGGAGATAAGATTTGTCATCTTCAGTCTGCCTCACTACAACTTCAGAAG
27394146 GATAAGACTAAATGGGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCAC
1 GATAAGACTAAATGGGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCAC
* *
27394211 CCACTGCAACTTCAGCGGGATAGGATTACCGACTTTAATCTGCTCCACTGTAACTTTAGGGAGAT
66 CCACTGCAACTTCAGCAGGATAGGATTACCGGCTTTAATCTGCTCCACTGTAACTTTAGGGAGAT
*
27394276 AAGATTTATCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCC
131 AAGATTTATCATCTTCAGTCTGCCTTACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCC
27394341 GCTCCACTGCAACTTCAGGGAGATAAGACT
196 GCTCCACTGCAACTTCAGGGAGATAAGACT
27394371 CGATCTGTTA
Statistics
Matches: 573, Mismatches: 32, Indels: 17
0.92 0.05 0.03
Matches are distributed among these distances:
387 4 0.01
388 460 0.80
389 105 0.18
390 4 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (388 bp):
GATAAGACTAAATGGGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCAC
CCACTGCAACTTCAGCAGGATAGGATTACCGGCTTTAATCTGCTCCACTGTAACTTTAGGGAGAT
AAGATTTATCATCTTCAGTCTGCCTTACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCC
GCTCCACTGCAACTTCAGGGAGATAAGACTAAATGCGATCTGCTCTTTGCAACTTCAGAGAGATA
AGATCTAAGGTTTCAATCCGCCCACTGCAACTTCAGCGGGATAGGATTACCGGCTTTAATCTGCT
CCACTGCAACTTCAGGGAGATAAGATTTGTCATCTTCAGTCTGCCTCACTACAACTTCAGAAG
Found at i:27394154 original size:172 final size:171
Alignment explanation
Indices: 27393957--27394326 Score: 605
Period size: 172 Copynumber: 2.1 Consensus size: 171
27393947 TAGTCCGCTC
* * *
27393957 CACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTTTCTGCAACTTCAGAGAGATAAGAT
1 CACTGCAACTTCAGAG-GATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGAT
* * * *
27394022 CTAAGGTTTCAATCCGCCCACTGCAACTTCAGCGGGATAGGATTATCGGCTTTAATCTGCTCTAC
65 CTAAGGTTTCAATCCACCCACTGCAACTTCAGCGGGATAGGATTACCGACTTTAATCTGCTCCAC
*
27394087 TGCAACTTTAGGGAGATAAGATTTGTCATCTTCAGTCTGCCT
130 TGCAACTTTAGGGAGATAAGATTTATCATCTTCAGTCTGCCT
* *
27394129 CACTACAACTTCAGAAGGATAAGACTAAATGGGATCTGCTCTCTGCAACTTCAGAGAGATAAGAT
1 CACTGCAACTTCAG-AGGATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGAT
*
27394194 CTAAGGTTTTAATCCACCCACTGCAACTTCAGCGGGATAGGATTACCGACTTTAATCTGCTCCAC
65 CTAAGGTTTCAATCCACCCACTGCAACTTCAGCGGGATAGGATTACCGACTTTAATCTGCTCCAC
*
27394259 TGTAACTTTAGGGAGATAAGATTTATCATCTTCAGTCTGCCT
130 TGCAACTTTAGGGAGATAAGATTTATCATCTTCAGTCTGCCT
27394301 CACTGCAACTTCAGGAGGATAAGACT
1 CACTGCAACTTCA-GAGGATAAGACT
27394327 TGCTTACTTA
Statistics
Matches: 183, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
172 181 0.99
173 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (171 bp):
CACTGCAACTTCAGAGGATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATC
TAAGGTTTCAATCCACCCACTGCAACTTCAGCGGGATAGGATTACCGACTTTAATCTGCTCCACT
GCAACTTTAGGGAGATAAGATTTATCATCTTCAGTCTGCCT
Found at i:27394321 original size:89 final size:89
Alignment explanation
Indices: 27393999--27394368 Score: 301
Period size: 89 Copynumber: 4.2 Consensus size: 89
27393989 GATCTGCTTT
* * *** * * *
27393999 CTGCAACTTCAGAGAGATAAGATCTAAGGT-TTCAATCCGCC-CACTGCAACTTCAGCGGGATAG
1 CTGCAACTTCAGGGAGATAAGATTTATCATCTTCAGTCTGCCTCACTGCAACTTCAGCGGGATAA
* * *
27394062 GATTATCGGCTTTAATCTGCTCTA
66 GATTACCGACTTTAATCTGCTCCA
* * * **
27394086 CTGCAACTTTAGGGAGATAAGATTTGTCATCTTCAGTCTGCCTCACTACAACTTCAGAAGGATAA
1 CTGCAACTTCAGGGAGATAAGATTTATCATCTTCAGTCTGCCTCACTGCAACTTCAGCGGGATAA
* * *** *
27394151 GACTA---AATGGGATCTGCT-CT
66 GATTACCGACTTTAATCTGCTCCA
* * *** * * ** *
27394171 CTGCAACTTCAGAGAGATAAGATCTAAGGT-TTTAATCCACC-CACTGCAACTTCAGCGGGATAG
1 CTGCAACTTCAGGGAGATAAGATTTATCATCTTCAGTCTGCCTCACTGCAACTTCAGCGGGATAA
27394234 GATTACCGACTTTAATCTGCTCCA
66 GATTACCGACTTTAATCTGCTCCA
* *
27394258 CTGTAACTTTAGGGAGATAAGATTTATCATCTTCAGTCTGCCTCACTGCAACTTCAG-GAGGATA
1 CTGCAACTTCAGGGAGATAAGATTTATCATCTTCAGTCTGCCTCACTGCAACTTCAGCG-GGATA
* ** * *
27394322 AGACTTGCTTAC-TTAGTCCGCTCCA
65 AGA-TTACCGACTTTAATCTGCTCCA
27394347 CTGCAACTTCAGGGAGATAAGA
1 CTGCAACTTCAGGGAGATAAGA
27394369 CTCGATCTGT
Statistics
Matches: 212, Mismatches: 61, Indels: 18
0.73 0.21 0.06
Matches are distributed among these distances:
83 22 0.10
84 7 0.03
85 23 0.11
86 17 0.08
87 47 0.22
88 17 0.08
89 74 0.35
90 5 0.02
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (89 bp):
CTGCAACTTCAGGGAGATAAGATTTATCATCTTCAGTCTGCCTCACTGCAACTTCAGCGGGATAA
GATTACCGACTTTAATCTGCTCCA
Found at i:27394366 original size:44 final size:46
Alignment explanation
Indices: 27393864--27394375 Score: 152
Period size: 44 Copynumber: 11.8 Consensus size: 46
27393854 GCTTTAATCT
* * * *
27393864 GCTCCACTGTAACTTTAGGGAGATAAGATTTG-TCATCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGATCATCTTCAGTCC
* * *
27393909 GC-CTTACTGCAACTTCA-GGAGGATAAGACTTGCTTA-CTT-AGTCC
1 GCTC-CACTGCAACTTCAGGGA-GATAAGACTTGATCATCTTCAGTCC
* * * *
27393953 GCTCCACTGCAACTTCAGGGAGATAAGACTAGAT--GC--GA-TCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGATCATCTTCAGTCC
** * *** *
27393994 GCT-TTCTGCAACTTCAGAGAGATAAGA-TCT-AAGGT-TTCAATCC
1 GCTCCACTGCAACTTCAGGGAGATAAGACT-TGATCATCTTCAGTCC
* ** * * *
27394037 GC-CCACTGCAACTTCAGCGG-GATAGGA-TT-ATCGGCTTTAATCT
1 GCTCCACTGCAACTTCAG-GGAGATAAGACTTGATCATCTTCAGTCC
* * * *
27394080 GCTCTACTGCAACTTTAGGGAGATAAGATTTG-TCATCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGATCATCTTCAGTCC
* * * *** *
27394125 GC-CTCACTACAACTTCA-GAAGGATAAGAC-T-A-AAT-GGGA-TCT
1 GCTC-CACTGCAACTTCAGGGA-GATAAGACTTGATCATCTTCAGTCC
* * * * *
27394166 GCT-CTCTGCAACTTCAGAGAGATAAGATCTAAGGT--T-TT-AATCC
1 GCTCCACTGCAACTTCAGGGAGATAAGA-CT-TGATCATCTTCAGTCC
* * * * * *
27394209 AC-CCACTGCAACTTCAGCGG-GATAGGA-TT-ACCGA-CTTTAATCT
1 GCTCCACTGCAACTTCAG-GGAGATAAGACTTGATC-ATCTTCAGTCC
* * * *
27394252 GCTCCACTGTAACTTTAGGGAGATAAGA-TTTATCATCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGATCATCTTCAGTCC
* *
27394297 GC-CTCACTGCAACTTCA-GGAGGATAAGACTTGCTTA-CTT-AGTCC
1 GCTC-CACTGCAACTTCAGGGA-GATAAGACTTGATCATCTTCAGTCC
*
27394341 GCTCCACTGCAACTTCAGGGAGATAAGACTCGATC
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGATC
27394376 TGTTATCTTC
Statistics
Matches: 344, Mismatches: 76, Indels: 95
0.67 0.15 0.18
Matches are distributed among these distances:
39 2 0.01
40 39 0.11
41 13 0.04
42 9 0.03
43 66 0.19
44 114 0.33
45 95 0.28
46 6 0.02
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (46 bp):
GCTCCACTGCAACTTCAGGGAGATAAGACTTGATCATCTTCAGTCC
Found at i:27406698 original size:16 final size:16
Alignment explanation
Indices: 27406677--27406712 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
27406667 TTTGGTTCGC
27406677 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
27406693 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
27406709 TGTA
1 TGTA
27406713 ATAGCAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:27406966 original size:18 final size:17
Alignment explanation
Indices: 27406945--27406979 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
27406935 TTATTATTAA
*
27406945 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
27406963 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
27406980 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:27407044 original size:14 final size:16
Alignment explanation
Indices: 27407013--27407046 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
27407003 TTTTGGTAAA
27407013 TTATAATATTTTATTG
1 TTATAATATTTTATTG
27407029 TTATAAT-TTTTA-TG
1 TTATAATATTTTATTG
27407043 TTAT
1 TTAT
27407047 TTTAATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.33
15 5 0.28
16 7 0.39
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (16 bp):
TTATAATATTTTATTG
Found at i:27407094 original size:25 final size:25
Alignment explanation
Indices: 27407047--27407116 Score: 74
Period size: 25 Copynumber: 2.8 Consensus size: 25
27407037 TTTATGTTAT
** *
27407047 TTTAATATATAATAAATATTTAATAA
1 TTTAATATATAATATTTA-TTAAAAA
27407073 -TTAATATATAATATTTTATTAAAAA
1 TTTAATATATAATA-TTTATTAAAAA
27407098 TTTAAT-TA-AATATTTATTA
1 TTTAATATATAATATTTATTA
27407117 TTTATTTAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
23 7 0.18
24 4 0.10
25 21 0.54
26 7 0.18
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (25 bp):
TTTAATATATAATATTTATTAAAAA
Done.